A depth-of-interaction PET detector using mutual gain-equalized silicon photomultiplier

DOE Office of Scientific and Technical Information (OSTI.GOV)

W. Xi, A.G, Weisenberger, H. Dong, Brian Kross, S. Lee, J. McKisson, Carl Zorn

We developed a prototype high resolution, high efficiency depth-encoding detector for PET applications based on dual-ended readout of LYSO array with two silicon photomultipliers (SiPMs). Flood images, energy resolution, and depth-of-interaction (DOI) resolution were measured for a LYSO array - 0.7 mm in crystal pitch and 10 mm in thickness - with four unpolished parallel sides. Flood images were obtained such that individual crystal element in the array is resolved. The energy resolution of the entire array was measured to be 33%, while individual crystal pixel elements utilizing the signal from both sides ranged from 23.3% to 27%. By applyingmore » a mutual-gain equalization method, a DOI resolution of 2 mm for the crystal array was obtained in the experiments while simulations indicate {approx}1 mm DOI resolution could possibly be achieved. The experimental DOI resolution can be further improved by obtaining revised detector supporting electronics with better energy resolutions. This study provides a detailed detector calibration and DOI response characterization of the dual-ended readout SiPM-based PET detectors, which will be important in the design and calibration of a PET scanner in the future.« less

Towards nanometric resolution in multilayer depth profiling: a comparative study of RBS, SIMS, XPS and GDOES.

PubMed

Escobar Galindo, Ramón; Gago, Raul; Duday, David; Palacio, Carlos

2010-04-01

An increasing amount of effort is currently being directed towards the development of new functionalized nanostructured materials (i.e., multilayers and nanocomposites). Using an appropriate combination of composition and microstructure, it is possible to optimize and tailor the final properties of the material to its final application. The analytical characterization of these new complex nanostructures requires high-resolution analytical techniques that are able to provide information about surface and depth composition at the nanometric level. In this work, we comparatively review the state of the art in four different depth-profiling characterization techniques: Rutherford backscattering spectroscopy (RBS), secondary ion mass spectrometry (SIMS), X-ray photoelectron spectroscopy (XPS) and glow discharge optical emission spectroscopy (GDOES). In addition, we predict future trends in these techniques regarding improvements in their depth resolutions. Subnanometric resolution can now be achieved in RBS using magnetic spectrometry systems. In SIMS, the use of rotating sample holders and oxygen flooding during analysis as well as the optimization of floating low-energy ion guns to lower the impact energy of the primary ions improves the depth resolution of the technique. Angle-resolved XPS provides a very powerful and nondestructive technique for obtaining depth profiling and chemical information within the range of a few monolayers. Finally, the application of mathematical tools (deconvolution algorithms and a depth-profiling model), pulsed sources and surface plasma cleaning procedures is expected to greatly improve GDOES depth resolution.

Design, Fabrication and Characterization of A Bi-Frequency Co-Linear Array

PubMed Central

Wang, Zhuochen; Li, Sibo; Czernuszewicz, Tomasz J; Gallippi, Caterina M.; Liu, Ruibin; Geng, Xuecang

2016-01-01

Ultrasound imaging with high resolution and large penetration depth has been increasingly adopted in medical diagnosis, surgery guidance, and treatment assessment. Conventional ultrasound works at a particular frequency, with a −6 dB fractional bandwidth of ~70 %, limiting the imaging resolution or depth of field. In this paper, a bi-frequency co-linear array with resonant frequencies of 8 MHz and 20 MHz was investigated to meet the requirements of resolution and penetration depth for a broad range of ultrasound imaging applications. Specifically, a 32-element bi-frequency co-linear array was designed and fabricated, followed by element characterization and real-time sectorial scan (S-scan) phantom imaging using a Verasonics system. The bi-frequency co-linear array was tested in four different modes by switching between low and high frequencies on transmit and receive. The four modes included the following: (1) transmit low, receive low, (2) transmit low, receive high, (3) transmit high, receive low, (4) transmit high, receive high. After testing, the axial and lateral resolutions of all modes were calculated and compared. The results of this study suggest that bi-frequency co-linear arrays are potential aids for wideband fundamental imaging and harmonic/sub-harmonic imaging. PMID:26661069

Relationship between perception of image resolution and peripheral visual field in stereoscopic images

NASA Astrophysics Data System (ADS)

Ogawa, Masahiko; Shidoji, Kazunori

2011-03-01

High-resolution stereoscopic images are effective for use in virtual reality and teleoperation systems. However, the higher the image resolution, the higher is the cost of computer processing and communication. To reduce this cost, numerous earlier studies have suggested the use of multi-resolution images, which have high resolution in region of interests and low resolution in other areas. However, observers can perceive unpleasant sensations and incorrect depth because they can see low-resolution areas in their field of vision. In this study, we conducted an experiment to research the relationship between the viewing field and the perception of image resolution, and determined respective thresholds of image-resolution perception for various positions of the viewing field. The results showed that participants could not distinguish between the high-resolution stimulus and the decreased stimulus, 63 ppi, at positions more than 8 deg outside the gaze point. Moreover, with positions shifted a further 11 and 13 deg from the gaze point, participants could not distinguish between the high-resolution stimulus and the decreased stimuli whose resolution densities were 42 and 25 ppi. Hence, we will propose the composition of multi-resolution images in which observers do not perceive unpleasant sensations and incorrect depth with data reduction (compression).

Urban-scale mapping of PM2.5 distribution via data fusion between high-density sensor network and MODIS Aerosol Optical Depth

NASA Astrophysics Data System (ADS)

Ba, Yu Tao; xian Liu, Bao; Sun, Feng; Wang, Li hua; Tang, Yu jia; Zhang, Da wei

2017-04-01

High-resolution mapping of PM2.5 is the prerequisite for precise analytics and subsequent anti-pollution interventions. Considering the large variances of particulate distribution, urban-scale mapping is challenging either with ground-based fixed stations, with satellites or via models. In this study, a dynamic fusion method between high-density sensor network and MODIS Aerosol Optical Depth (AOD) was introduced. The sensor network was deployed in Beijing ( > 1000 fixed monitors across 16000 km2 area) to provide raw observations with high temporal resolution (sampling interval < 1 hour), high spatial resolution in flat areas ( < 1 km), and low spatial resolution in mountainous areas ( > 5 km). The MODIS AOD was calibrated to provide distribution map with low temporal resolution (daily) and moderate spatial resolution ( = 3 km). By encoding the data quality and defects (e.g. could, reflectance, abnormal), a hybrid interpolation procedure with cross-validation generated PM2.5 distribution with both high temporal and spatial resolution. Several no-pollutant and high-pollution periods were tested to validate the proposed fusion method for capturing the instantaneous patterns of PM2.5 emission.

Triangulation-based 3D surveying borescope

NASA Astrophysics Data System (ADS)

Pulwer, S.; Steglich, P.; Villringer, C.; Bauer, J.; Burger, M.; Franz, M.; Grieshober, K.; Wirth, F.; Blondeau, J.; Rautenberg, J.; Mouti, S.; Schrader, S.

2016-04-01

In this work, a measurement concept based on triangulation was developed for borescopic 3D-surveying of surface defects. The integration of such measurement system into a borescope environment requires excellent space utilization. The triangulation angle, the projected pattern, the numerical apertures of the optical system, and the viewing angle were calculated using partial coherence imaging and geometric optical raytracing methods. Additionally, optical aberrations and defocus were considered by the integration of Zernike polynomial coefficients. The measurement system is able to measure objects with a size of 50 μm in all dimensions with an accuracy of +/- 5 μm. To manage the issue of a low depth of field while using an optical high resolution system, a wavelength dependent aperture was integrated. Thereby, we are able to control depth of field and resolution of the optical system and can use the borescope in measurement mode with high resolution and low depth of field or in inspection mode with low resolution and higher depth of field. First measurements of a demonstrator system are in good agreement with our simulations.

Improving Axial Resolution in Confocal Microscopy with New High Refractive Index Mounting Media

PubMed Central

Fouquet, Coralie; Gilles, Jean-François; Heck, Nicolas; Dos Santos, Marc; Schwartzmann, Richard; Cannaya, Vidjeacoumary; Morel, Marie-Pierre; Davidson, Robert Stephen; Trembleau, Alain; Bolte, Susanne

2015-01-01

Resolution, high signal intensity and elevated signal to noise ratio (SNR) are key issues for biologists who aim at studying the localisation of biological structures at the cellular and subcellular levels using confocal microscopy. The resolution required to separate sub-cellular biological structures is often near to the resolving power of the microscope. When optimally used, confocal microscopes may reach resolutions of 180 nm laterally and 500 nm axially, however, axial resolution in depth is often impaired by spherical aberration that may occur due to refractive index mismatches. Spherical aberration results in broadening of the point-spread function (PSF), a decrease in peak signal intensity when imaging in depth and a focal shift that leads to the distortion of the image along the z-axis and thus in a scaling error. In this study, we use the novel mounting medium CFM3 (Citifluor Ltd., UK) with a refractive index of 1.518 to minimize the effects of spherical aberration. This mounting medium is compatible with most common fluorochromes and fluorescent proteins. We compare its performance with established mounting media, harbouring refractive indices below 1.500, by estimating lateral and axial resolution with sub-resolution fluorescent beads. We show furthermore that the use of the high refractive index media renders the tissue transparent and improves considerably the axial resolution and imaging depth in immuno-labelled or fluorescent protein labelled fixed mouse brain tissue. We thus propose to use those novel high refractive index mounting media, whenever optimal axial resolution is required. PMID:25822785

Aerosol Optical Depth Retrievals from High-Resolution Commercial Satellite Imagery Over Areas of High Surface Reflectance

DTIC Science & Technology

2006-06-01

angle Imaging SpectroRadiometer MODIS Moderate Resolution Imaging Spectroradiometer NGA National Geospatial Intelligence Agency POI Principles of...and µ , the cosine of the viewing zenith angle and the effect of the variation of each of these variables on total optical depth. Extraterrestrial ...Eq. (34). Additionally, solar zenith angle also plays a role in the third term on the RHS of Eq. (34) by modifying extraterrestrial spectral solar

Three dimensional live-cell STED microscopy at increased depth using a water immersion objective

NASA Astrophysics Data System (ADS)

Heine, Jörn; Wurm, Christian A.; Keller-Findeisen, Jan; Schönle, Andreas; Harke, Benjamin; Reuss, Matthias; Winter, Franziska R.; Donnert, Gerald

2018-05-01

Modern fluorescence superresolution microscopes are capable of imaging living cells on the nanometer scale. One of those techniques is stimulated emission depletion (STED) which increases the microscope's resolution many times in the lateral and the axial directions. To achieve these high resolutions not only close to the coverslip but also at greater depths, the choice of objective becomes crucial. Oil immersion objectives have frequently been used for STED imaging since their high numerical aperture (NA) leads to high spatial resolutions. But during live-cell imaging, especially at great penetration depths, these objectives have a distinct disadvantage. The refractive index mismatch between the immersion oil and the usually aqueous embedding media of living specimens results in unwanted spherical aberrations. These aberrations distort the point spread functions (PSFs). Notably, during z- and 3D-STED imaging, the resolution increase along the optical axis is majorly hampered if at all possible. To overcome this limitation, we here use a water immersion objective in combination with a spatial light modulator for z-STED measurements of living samples at great depths. This compact design allows for switching between objectives without having to adapt the STED beam path and enables on the fly alterations of the STED PSF to correct for aberrations. Furthermore, we derive the influence of the NA on the axial STED resolution theoretically and experimentally. We show under live-cell imaging conditions that a water immersion objective leads to far superior results than an oil immersion objective at penetration depths of 5-180 μm.

Numerical dispersion compensation for Partial Coherence Interferometry and Optical Coherence Tomography.

PubMed

Fercher, A; Hitzenberger, C; Sticker, M; Zawadzki, R; Karamata, B; Lasser, T

2001-12-03

Dispersive samples introduce a wavelength dependent phase distortion to the probe beam. This leads to a noticeable loss of depth resolution in high resolution OCT using broadband light sources. The standard technique to avoid this consequence is to balance the dispersion of the sample byarrangingadispersive materialinthereference arm. However, the impact of dispersion is depth dependent. A corresponding depth dependent dispersion balancing technique is diffcult to implement. Here we present a numerical dispersion compensation technique for Partial Coherence Interferometry (PCI) and Optical Coherence Tomography (OCT) based on numerical correlation of the depth scan signal with a depth variant kernel. It can be used a posteriori and provides depth dependent dispersion compensation. Examples of dispersion compensated depth scan signals obtained from microscope cover glasses are presented.

A depth-encoding PET detector that uses light sharing and single-ended readout with silicon photomultipliers

NASA Astrophysics Data System (ADS)

Kuang, Zhonghua; Yang, Qian; Wang, Xiaohui; Fu, Xin; Ren, Ning; Sang, Ziru; Wu, San; Zheng, Yunfei; Zhang, Xianming; Hu, Zhanli; Du, Junwei; Liang, Dong; Liu, Xin; Zheng, Hairong; Yang, Yongfeng

2018-02-01

Detectors with depth-encoding capability and good timing resolution are required to develop high-performance whole-body or total-body PET scanners. In this work, depth-encoding PET detectors that use light sharing between two discrete crystals and single-ended readout with silicon photomultipliers (SiPMs) were manufactured and evaluated. The detectors consisted of two unpolished 3  ×  3  ×  20 mm3 LYSO crystals with different coupling materials between them and were read out by Hamamatsu 3  ×  3 mm2 SiPMs with one-to-one coupling. The ratio of the energy of one SiPM to the total energy of two SiPMs was used to measure the depth of interaction (DOI). Detectors with different coupling materials in-between the crystals were measured in the singles mode in an effort to obtain detectors that can provide good DOI resolution. The DOI resolution and energy resolution of three types of detector were measured and the timing resolution was measured for the detector with the best DOI and energy resolution. The optimum detector, with 5 mm optical glue, a 9 mm triangular ESR and a 6 mm rectangular ESR in-between the unpolished crystals, provides a DOI resolution of 2.65 mm, an energy resolution of 10.0% and a timing resolution of 427 ps for events of E  >  400 keV. The detectors simultaneously provide good DOI and timing resolution, and show great promise for the development of high-performance whole-body and total-body PET scanners.

Joint estimation of high resolution images and depth maps from light field cameras

NASA Astrophysics Data System (ADS)

Ohashi, Kazuki; Takahashi, Keita; Fujii, Toshiaki

2014-03-01

Light field cameras are attracting much attention as tools for acquiring 3D information of a scene through a single camera. The main drawback of typical lenselet-based light field cameras is the limited resolution. This limitation comes from the structure where a microlens array is inserted between the sensor and the main lens. The microlens array projects 4D light field on a single 2D image sensor at the sacrifice of the resolution; the angular resolution and the position resolution trade-off under the fixed resolution of the image sensor. This fundamental trade-off remains after the raw light field image is converted to a set of sub-aperture images. The purpose of our study is to estimate a higher resolution image from low resolution sub-aperture images using a framework of super-resolution reconstruction. In this reconstruction, these sub-aperture images should be registered as accurately as possible. This registration is equivalent to depth estimation. Therefore, we propose a method where super-resolution and depth refinement are performed alternatively. Most of the process of our method is implemented by image processing operations. We present several experimental results using a Lytro camera, where we increased the resolution of a sub-aperture image by three times horizontally and vertically. Our method can produce clearer images compared to the original sub-aperture images and the case without depth refinement.

Chemical analysis of solids with sub-nm depth resolution by using a miniature LIMS system designed for in situ space research

NASA Astrophysics Data System (ADS)

Riedo, Andreas; Grimaudo, Valentine; Moreno-García, Pavel; Brigitte Neuland, Maike; Tulej, Marek; Broekmann, Peter; Wurz, Peter

2015-04-01

Sensitive elemental and isotope analysis of solid samples are of considerable interest in nowadays in situ space research. For context in situ analysis, high spatial resolution is also of substantial importance. While the measurements conducted with high lateral resolution can provide compositional details of the surface of highly heterogeneous materials, depth profiling measurements yield information on compositional details of surface and subsurface. The mass spectrometric analysis with the vertical resolution at sub-µm levels is of special consideration and can deliver important information on processes, which may have modified the surface. Information on space weathering effects can be readily determined when the sample composition of the surface and sub-surface is studied with high vertical resolution. In this contribution we will present vertical depth resolution measurements conducted by our sensitive miniature laser ablation ionization time-of-flight mass spectrometer (160mm x Ø 60mm) designed for in situ space research [1-3]. The mass spectrometer is equipped with a fs-laser system (~190fs pulse width, λ = 775nm), which is used for ablation and ionization of the sample material [2]. Laser radiation is focussed on the target material to a spot size of about 10-20 µm in diameter. Mass spectrometric measurements are conducted with a mass resolution (m/Δm) of about 400-500 (at 56Fe mass peak) and with a superior dynamic range of more than eight orders of magnitude. The depth profiling performance studies were conducted on 10µm thick Cu films that were deposited by an additive-assisted electrochemical procedure on Si-wafers. The presented measurement study will show that the current instrument prototype is able to conduct quantitative chemical (elemental and isotope) analysis of solids with a vertical resolution at sub-nm level. Contaminants, incorporated by using additives (polymers containing e.g. C, N, O, S) and with layer thickness of a few nanometres, can be fully resolved [1]. The current measurement performance, including the sensitivity and the high vertical depth resolution, opens new perspectives for future applications in the laboratory, e.g. measurements of Genesis samples, and new measurement capabilities for in situ space research. References 1)V. Grimaudo, P. Moreno-García, M.B. Neuland, M. Tulej, P. Broekmann, P. Wurz and A. Riedo, "High-resolution chemical depth profiling of solid material using a miniature laser ablation/ionization mass spectrometer", Anal. Chem., 2015, submitted. 2)A. Riedo, M. Neuland, S. Meyer, M. Tulej, and P. Wurz, "Coupling of LMS with a fs-laser ablation ion source: elemental and isotope composition measurements", J. Anal. At. Spectrom., 2013, 28, 1256. 3)Tulej et al. CAMAM: A Miniature Laser Ablation Ionisation Mass Spectrometer and Microscope-Camera System for In Situ Investigation of the Composition and Morphology of Extraterrestrial Materials, Geostand. Geoanal. Res., 2014, doi: 10.1111/j.1751-908X.2014.00302.x

Depth Profilometry via Multiplexed Optical High-Coherence Interferometry

PubMed Central

Kazemzadeh, Farnoud; Wong, Alexander; Behr, Bradford B.; Hajian, Arsen R.

2015-01-01

Depth Profilometry involves the measurement of the depth profile of objects, and has significant potential for various industrial applications that benefit from non-destructive sub-surface profiling such as defect detection, corrosion assessment, and dental assessment to name a few. In this study, we investigate the feasibility of depth profilometry using an Multiplexed Optical High-coherence Interferometry MOHI instrument. The MOHI instrument utilizes the spatial coherence of a laser and the interferometric properties of light to probe the reflectivity as a function of depth of a sample. The axial and lateral resolutions, as well as imaging depth, are decoupled in the MOHI instrument. The MOHI instrument is capable of multiplexing interferometric measurements into 480 one-dimensional interferograms at a location on the sample and is built with axial and lateral resolutions of 40 μm at a maximum imaging depth of 700 μm. Preliminary results, where a piece of sand-blasted aluminum, an NBK7 glass piece, and an optical phantom were successfully probed using the MOHI instrument to produce depth profiles, demonstrate the feasibility of such an instrument for performing depth profilometry. PMID:25803289

Depth profilometry via multiplexed optical high-coherence interferometry.

PubMed

Kazemzadeh, Farnoud; Wong, Alexander; Behr, Bradford B; Hajian, Arsen R

2015-01-01

Depth Profilometry involves the measurement of the depth profile of objects, and has significant potential for various industrial applications that benefit from non-destructive sub-surface profiling such as defect detection, corrosion assessment, and dental assessment to name a few. In this study, we investigate the feasibility of depth profilometry using an Multiplexed Optical High-coherence Interferometry MOHI instrument. The MOHI instrument utilizes the spatial coherence of a laser and the interferometric properties of light to probe the reflectivity as a function of depth of a sample. The axial and lateral resolutions, as well as imaging depth, are decoupled in the MOHI instrument. The MOHI instrument is capable of multiplexing interferometric measurements into 480 one-dimensional interferograms at a location on the sample and is built with axial and lateral resolutions of 40 μm at a maximum imaging depth of 700 μm. Preliminary results, where a piece of sand-blasted aluminum, an NBK7 glass piece, and an optical phantom were successfully probed using the MOHI instrument to produce depth profiles, demonstrate the feasibility of such an instrument for performing depth profilometry.

High Spectral Resolution Lidar Data

DOE Data Explorer

Eloranta, Ed

2004-12-01

The HSRL provided calibrated vertical profiles of optical depth, backscatter cross section and depoloarization at a wavelength of 532 nm. Profiles were acquired at 2.5 second intervals with 7.5 meter resolution. Profiles extended from an altitude of 100 m to 30 km in clear air. The lidar penetrated to a maximum optical depth of ~ 4 under cloudy conditions. Our data contributed directly to the aims of the M-PACE experiment, providing calibrated optical depth and optical backscatter measurements which were not available from any other instrument.

Retinal optical coherence tomography at 1 μm with dynamic focus control and axial motion tracking

NASA Astrophysics Data System (ADS)

Cua, Michelle; Lee, Sujin; Miao, Dongkai; Ju, Myeong Jin; Mackenzie, Paul J.; Jian, Yifan; Sarunic, Marinko V.

2016-02-01

High-resolution optical coherence tomography (OCT) retinal imaging is important to noninvasively visualize the various retinal structures to aid in better understanding of the pathogenesis of vision-robbing diseases. However, conventional OCT systems have a trade-off between lateral resolution and depth-of-focus. In this report, we present the development of a focus-stacking OCT system with automatic focus optimization for high-resolution, extended-focal-range clinical retinal imaging by incorporating a variable-focus liquid lens into the sample arm optics. Retinal layer tracking and selection was performed using a graphics processing unit accelerated processing platform for focus optimization, providing real-time layer-specific en face visualization. After optimization, multiple volumes focused at different depths were acquired, registered, and stitched together to yield a single, high-resolution focus-stacked dataset. Using this system, we show high-resolution images of the retina and optic nerve head, from which we extracted clinically relevant parameters such as the nerve fiber layer thickness and lamina cribrosa microarchitecture.

Retinal optical coherence tomography at 1 μm with dynamic focus control and axial motion tracking.

PubMed

Cua, Michelle; Lee, Sujin; Miao, Dongkai; Ju, Myeong Jin; Mackenzie, Paul J; Jian, Yifan; Sarunic, Marinko V

2016-02-01

High-resolution optical coherence tomography (OCT) retinal imaging is important to noninvasively visualize the various retinal structures to aid in better understanding of the pathogenesis of vision-robbing diseases. However, conventional OCT systems have a trade-off between lateral resolution and depth-of-focus. In this report, we present the development of a focus-stacking OCT system with automatic focus optimization for high-resolution, extended-focal-range clinical retinal imaging by incorporating a variable-focus liquid lens into the sample arm optics. Retinal layer tracking and selection was performed using a graphics processing unit accelerated processing platform for focus optimization, providing real-time layer-specific en face visualization. After optimization, multiple volumes focused at different depths were acquired, registered, and stitched together to yield a single, high-resolution focus-stacked dataset. Using this system, we show high-resolution images of the retina and optic nerve head, from which we extracted clinically relevant parameters such as the nerve fiber layer thickness and lamina cribrosa microarchitecture.

Optical coherence tomography - principles and applications

NASA Astrophysics Data System (ADS)

Fercher, A. F.; Drexler, W.; Hitzenberger, C. K.; Lasser, T.

2003-02-01

There have been three basic approaches to optical tomography since the early 1980s: diffraction tomography, diffuse optical tomography and optical coherence tomography (OCT). Optical techniques are of particular importance in the medical field, because these techniques promise to be safe and cheap and, in addition, offer a therapeutic potential. Advances in OCT technology have made it possible to apply OCT in a wide variety of applications but medical applications are still dominating. Specific advantages of OCT are its high depth and transversal resolution, the fact, that its depth resolution is decoupled from transverse resolution, high probing depth in scattering media, contact-free and non-invasive operation, and the possibility to create various function dependent image contrasting methods. This report presents the principles of OCT and the state of important OCT applications. OCT synthesises cross-sectional images from a series of laterally adjacent depth-scans. At present OCT is used in three different fields of optical imaging, in macroscopic imaging of structures which can be seen by the naked eye or using weak magnifications, in microscopic imaging using magnifications up to the classical limit of microscopic resolution and in endoscopic imaging, using low and medium magnification. First, OCT techniques, like the reflectometry technique and the dual beam technique were based on time-domain low coherence interferometry depth-scans. Later, Fourier-domain techniques have been developed and led to new imaging schemes. Recently developed parallel OCT schemes eliminate the need for lateral scanning and, therefore, dramatically increase the imaging rate. These schemes use CCD cameras and CMOS detector arrays as photodetectors. Video-rate three-dimensional OCT pictures have been obtained. Modifying interference microscopy techniques has led to high-resolution optical coherence microscopy that achieved sub-micrometre resolution. This report is concluded with a short presentation of important OCT applications. Ophthalmology is, due to the transparent ocular structures, still the main field of OCT application. The first commercial instrument too has been introduced for ophthalmic diagnostics (Carl Zeiss Meditec AG). Advances in using near-infrared light, however, opened the path for OCT imaging in strongly scattering tissues. Today, optical in vivo biopsy is one of the most challenging fields of OCT application. High resolution, high penetration depth, and its potential for functional imaging attribute to OCT an optical biopsy quality, which can be used to assess tissue and cell function and morphology in situ. OCT can already clarify the relevant architectural tissue morphology. For many diseases, however, including cancer in its early stages, higher resolution is necessary. New broad-bandwidth light sources, like photonic crystal fibres and superfluorescent fibre sources, and new contrasting techniques, give access to new sample properties and unmatched sensitivity and resolution.

The Three-Dimensional Point Spread Function of Aberration-Corrected Scanning Transmission Electron Microscopy

PubMed Central

Lupini, A.R.; de Jonge, N.

2012-01-01

Aberration-correction reduces the depth of field in scanning transmission electron microscopy (STEM) and thus allows three-dimensional imaging by depth-sectioning. This imaging mode offers the potential for sub-Ångstrom lateral resolution and nanometer-scale depth sensitivity. For biological samples, which may be many microns across and where high lateral resolution may not always be needed, optimizing the depth resolution even at the expense of lateral resolution may be desired, aiming to image through thick specimens. Although there has been extensive work examining and optimizing the probe formation in two-dimensions, there is less known about the probe shape along the optical axis. Here the probe shape is examined in three-dimensions in an attempt to better understand the depth-resolution in this mode. Examples are presented of how aberrations change the probe shape in three-dimensions, and it is found that off-axial aberrations may need to be considered for focal series of large areas. It is shown that oversized or annular apertures theoretically improve the vertical resolution for 3D imaging of nanoparticles. When imaging nanoparticles of several nanometer size, regular STEM can thereby be optimized such that the vertical full width at half maximum approaches that of the aberration corrected STEM with a standard aperture. PMID:21878149

Three-dimensional optoacoustic mesoscopy of the tumor heterogeneity in vivo using high depth-to-resolution multispectral optoacoustic tomography

NASA Astrophysics Data System (ADS)

Li, Jiao; Zhang, Songhe; Chekkoury, Andrei; Glasl, Sarah; Vetschera, Paul; Koberstein-Schwarz, Benno; Omar, Murad; Ntziachristos, Vasilis

2017-03-01

Multispectral optoacoustic mesoscopy (MSOM) has been recently introduced for cancer imaging, it has the potential for high resolution imaging of cancer development in vivo, at depths beyond the diffusion limit. Based on spectral features, optoacoustic imaging is capable of visualizing angiogenesis and imaging cancer heterogeneity of malignant tumors through endogenous hemoglobin. However, high-resolution structural and functional imaging of whole tumor mass is limited by modest penetration and image quality, due to the insufficient capability of ultrasound detectors and the twodimensional scan geometry. In this study, we introduce a novel multi-spectral optoacoustic mesoscopy (MSOM) for imaging subcutaneous or orthotopic tumors implanted in lab mice, with the high-frequency ultrasound linear array and a conical scanning geometry. Detailed volumetric images of vasculature and oxygen saturation of tissue in the entire tumors are obtained in vivo, at depths up to 10 mm with the desirable spatial resolutions approaching 70μm. This unprecedented performance enables the visualization of vasculature morphology and hypoxia conditions has been verified with ex vivo studies. These findings demonstrate the potential of MSOM for preclinical oncological studies in deep solid tumors to facilitate the characterization of tumor's angiogenesis and the evaluation of treatment strategies.

Enhanced High Resolution RBS System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pollock, Thomas J.; Hass, James A.; Klody, George M.

2011-06-01

Improvements in full spectrum resolution with the second NEC high resolution RBS system are summarized. Results for 50 A ring TiN/HfO films on Si yielding energy resolution on the order of 1 keV are also presented. Detector enhancements include improved pulse processing electronics, upgraded shielding for the MCP/RAE detector, and reduced noise generated from pumping. Energy resolution measurements on spectra front edge coupled with calculations using 0.4mStr solid angle show that beam energy spread at 400 KeV from the Pelletron registered accelerator is less than 100 eV. To improve user throughput, magnet control has been added to the automatic datamore » collection. Depth profiles derived from experimental data are discussed. For the thin films profiled, depth resolutions were on the Angstrom level with the non-linear energy/channel conversions ranging from 100 to 200 eV.« less

Three-dimensional laser microvision.

PubMed

Shimotahira, H; Iizuka, K; Chu, S C; Wah, C; Costen, F; Yoshikuni, Y

2001-04-10

A three-dimensional (3-D) optical imaging system offering high resolution in all three dimensions, requiring minimum manipulation and capable of real-time operation, is presented. The system derives its capabilities from use of the superstructure grating laser source in the implementation of a laser step frequency radar for depth information acquisition. A synthetic aperture radar technique was also used to further enhance its lateral resolution as well as extend the depth of focus. High-speed operation was made possible by a dual computer system consisting of a host and a remote microcomputer supported by a dual-channel Small Computer System Interface parallel data transfer system. The system is capable of operating near real time. The 3-D display of a tunneling diode, a microwave integrated circuit, and a see-through image taken by the system operating near real time are included. The depth resolution is 40 mum; lateral resolution with a synthetic aperture approach is a fraction of a micrometer and that without it is approximately 10 mum.

Effects of reflector and crystal surface on the performance of a depth-encoding PET detector with dual-ended readout

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Silin; Yang, Yongfeng, E-mail: yfyang@ucdavis.edu; Cherry, Simon R.

Purpose: Depth encoding detectors are required to improve the spatial resolution and spatial resolution uniformity of small animal positron emission tomography (PET) scanners, as well as dedicated breast and brain scanners. Depth of interaction (DOI) can be measured by using dual-ended readout of lutetium oxyorthosilicate (LSO) scintillator arrays with position-sensitive avalanche photodiodes. Inter-crystal reflectors and crystal surface treatments play important roles in determining the performance of dual-ended detectors. In this paper, the authors evaluated five LSO arrays made with three different intercrystal reflectors and with either polished or unpolished crystal surfaces. Methods: The crystal size in all arrays was 1.5more » mm, which is typical of the detector size used in small animal and dedicated breast scanners. The LSO arrays were measured with dual-ended readout and were compared in terms of flood histogram, energy resolution, and DOI resolution performance. Results: The four arrays using enhanced specular reflector (ESR) and Toray reflector provided similar quality flood histograms and the array using Crystal Wrap reflector gave the worst flood histogram. The two arrays using ESR reflector provided the best energy resolution and the array using Crystal Wrap reflector yielded the worst energy resolution. All arrays except the polished ESR array provided good DOI resolution ranging from 1.9 mm to 2.9 mm. DOI resolution improved as the gradient in light collection efficiency with depth (GLCED) increased. The geometric mean energies were also calculated for these dual-ended readout detectors as an alternative to the conventional summed total energy. It was shown that the geometric mean energy is advantageous in that it provides more uniform photopeak amplitude at different depths for arrays with high GLCED, and is beneficial in event selection by allowing a fixed energy window independent of depth. A new method of DOI calculation that improved the linearity of DOI ratio vs depth and simplifies the DOI calibration procedure also was developed and tested. Conclusions: The results of these studies provide useful guidance in selecting the proper reflectors and crystal surface treatments when LSO arrays are used for high-resolution PET applications in small animal scanners or dedicated breast and brain scanners.« less

High-resolution three-dimensional imaging with compress sensing

NASA Astrophysics Data System (ADS)

Wang, Jingyi; Ke, Jun

2016-10-01

LIDAR three-dimensional imaging technology have been used in many fields, such as military detection. However, LIDAR require extremely fast data acquisition speed. This makes the manufacture of detector array for LIDAR system is very difficult. To solve this problem, we consider using compress sensing which can greatly decrease the data acquisition and relax the requirement of a detection device. To use the compressive sensing idea, a spatial light modulator will be used to modulate the pulsed light source. Then a photodetector is used to receive the reflected light. A convex optimization problem is solved to reconstruct the 2D depth map of the object. To improve the resolution in transversal direction, we use multiframe image restoration technology. For each 2D piecewise-planar scene, we move the SLM half-pixel each time. Then the position where the modulated light illuminates will changed accordingly. We repeat moving the SLM to four different directions. Then we can get four low-resolution depth maps with different details of the same plane scene. If we use all of the measurements obtained by the subpixel movements, we can reconstruct a high-resolution depth map of the sense. A linear minimum-mean-square error algorithm is used for the reconstruction. By combining compress sensing and multiframe image restoration technology, we reduce the burden on data analyze and improve the efficiency of detection. More importantly, we obtain high-resolution depth maps of a 3D scene.

Deep skin structural and microcirculation imaging with extended-focus OCT

NASA Astrophysics Data System (ADS)

Blatter, Cedric; Grajciar, Branislav; Huber, Robert; Leitgeb, Rainer A.

2012-02-01

We present an extended focus OCT system for dermatologic applications that maintains high lateral resolution over a large depth range by using Bessel beam illumination. More, Bessel beams exhibit a self-reconstruction property that is particularly useful to avoid shadowing from surface structures such as hairs. High lateral resolution and high-speed measurement, thanks to a rapidly tuning swept source, allows not only for imaging of small skin structures in depth but also for comprehensive visualization of the small capillary network within the human skin in-vivo. We use this information for studying temporal vaso-responses to hypothermia. In contrast to other perfusion imaging methods such as laser Doppler imaging (LDI), OCT gives specific access to vascular responses in different vascular beds in depth.

Multi-Depth-Map Raytracing for Efficient Large-Scene Reconstruction.

PubMed

Arikan, Murat; Preiner, Reinhold; Wimmer, Michael

2016-02-01

With the enormous advances of the acquisition technology over the last years, fast processing and high-quality visualization of large point clouds have gained increasing attention. Commonly, a mesh surface is reconstructed from the point cloud and a high-resolution texture is generated over the mesh from the images taken at the site to represent surface materials. However, this global reconstruction and texturing approach becomes impractical with increasing data sizes. Recently, due to its potential for scalability and extensibility, a method for texturing a set of depth maps in a preprocessing and stitching them at runtime has been proposed to represent large scenes. However, the rendering performance of this method is strongly dependent on the number of depth maps and their resolution. Moreover, for the proposed scene representation, every single depth map has to be textured by the images, which in practice heavily increases processing costs. In this paper, we present a novel method to break these dependencies by introducing an efficient raytracing of multiple depth maps. In a preprocessing phase, we first generate high-resolution textured depth maps by rendering the input points from image cameras and then perform a graph-cut based optimization to assign a small subset of these points to the images. At runtime, we use the resulting point-to-image assignments (1) to identify for each view ray which depth map contains the closest ray-surface intersection and (2) to efficiently compute this intersection point. The resulting algorithm accelerates both the texturing and the rendering of the depth maps by an order of magnitude.

Adding polarimetric imaging to depth map using improved light field camera 2.0 structure

NASA Astrophysics Data System (ADS)

Zhang, Xuanzhe; Yang, Yi; Du, Shaojun; Cao, Yu

2017-06-01

Polarization imaging plays an important role in various fields, especially for skylight navigation and target identification, whose imaging system is always required to be designed with high resolution, broad band, and single-lens structure. This paper describe such a imaging system based on light field 2.0 camera structure, which can calculate the polarization state and depth distance from reference plane for every objet point within a single shot. This structure, including a modified main lens, a multi-quadrants Polaroid, a honeycomb-liked micro lens array, and a high resolution CCD, is equal to an "eyes array", with 3 or more polarization imaging "glasses" in front of each "eye". Therefore, depth can be calculated by matching the relative offset of corresponding patch on neighboring "eyes", while polarization state by its relative intensity difference, and their resolution will be approximately equal to each other. An application on navigation under clear sky shows that this method has a high accuracy and strong robustness.

Fast focus-scanning head in two-photon photoacoustic microscopy with electrically controlled liquid lens

NASA Astrophysics Data System (ADS)

Yamaoka, Yoshihisa; Kimura, Yuka; Harada, Yoshinori; Takamatsu, Tetsuro; Takahashi, Eiji

2018-02-01

Conventional one-photon photoacoustic microscopy (PAM) utilizes high-frequency components of generated photoacoustic waves to improve the depth resolution. However, to obtain optically-high resolution in PAM in the depth direction, the use of high-frequency ultrasonic waves is to be avoided. It is because that the propagation distance is shortened as the frequency of ultrasonic waves becomes high. To overcome this drawback, we have proposed and developed two-photon photoacoustic microscopy (TP-PAM). Two-photon absorption occurs only at the focus point. TPPAM does not need to use the high-frequency components of photoacoustic waves. Thus, TP-PAM can improve the penetration depth while preserving the spatial resolution. However, the image acquisition time of TP-PAM is longer than that of conventional PAM, because TP-PAM needs to scan the laser spot both in the depth and transverse directions to obtain cross-sectional images. In this paper, we have introduced a focus-tunable electrically-controlled liquid lens in TP-PAM. Instead of a mechanical stepping-motor stage, we employed electrically-controlled liquid lens so that the depth of the focus spot can be quickly changed. In our system, the imaging speed of TP-PAM using the liquid lens and one-axis stepping-motor stage was 10 times faster than that using a two-axis stepping-motor stage only. TP-PAM with focus-scanning head consisting of the liquid lens and stepping-motor stage will be a promising method to investigate the inside of living tissues.

Quantitative subsurface analysis using frequency modulated thermal wave imaging

NASA Astrophysics Data System (ADS)

Subhani, S. K.; Suresh, B.; Ghali, V. S.

2018-01-01

Quantitative depth analysis of the anomaly with an enhanced depth resolution is a challenging task towards the estimation of depth of the subsurface anomaly using thermography. Frequency modulated thermal wave imaging introduced earlier provides a complete depth scanning of the object by stimulating it with a suitable band of frequencies and further analyzing the subsequent thermal response using a suitable post processing approach to resolve subsurface details. But conventional Fourier transform based methods used for post processing unscramble the frequencies with a limited frequency resolution and contribute for a finite depth resolution. Spectral zooming provided by chirp z transform facilitates enhanced frequency resolution which can further improves the depth resolution to axially explore finest subsurface features. Quantitative depth analysis with this augmented depth resolution is proposed to provide a closest estimate to the actual depth of subsurface anomaly. This manuscript experimentally validates this enhanced depth resolution using non stationary thermal wave imaging and offers an ever first and unique solution for quantitative depth estimation in frequency modulated thermal wave imaging.

High-frequency Pulse-compression Ultrasound Imaging with an Annular Array

NASA Astrophysics Data System (ADS)

Mamou, J.; Ketterling, J. A.; Silverman, R. H.

High-frequency ultrasound (HFU) allows fine-resolution imaging at the expense of limited depth-of-field (DOF) and shallow acoustic penetration depth. Coded-excitation imaging permits a significant increase in the signal-to-noise ratio (SNR) and therefore, the acoustic penetration depth. A 17-MHz, five-element annular array with a focal length of 31 mm and a total aperture of 10 mm was fabricated using a 25-μm thick piezopolymer membrane. An optimized 8-μs linear chirp spanning 6.5-32 MHz was used to excite the transducer. After data acquisition, the received signals were linearly filtered by a compression filter and synthetically focused. To compare the chirp-array imaging method with conventional impulse imaging in terms of resolution, a 25-μm wire was scanned and the -6-dB axial and lateral resolutions were computed at depths ranging from 20.5 to 40.5 mm. A tissue-mimicking phantom containing 10-μm glass beads was scanned, and backscattered signals were analyzed to evaluate SNR and penetration depth. Finally, ex-vivo ophthalmic images were formed and chirp-coded images showed features that were not visible in conventional impulse images.

Mapping Cortical Laminar Structure in the 3D BigBrain.

PubMed

Wagstyl, Konrad; Lepage, Claude; Bludau, Sebastian; Zilles, Karl; Fletcher, Paul C; Amunts, Katrin; Evans, Alan C

2018-07-01

Histological sections offer high spatial resolution to examine laminar architecture of the human cerebral cortex; however, they are restricted by being 2D, hence only regions with sufficiently optimal cutting planes can be analyzed. Conversely, noninvasive neuroimaging approaches are whole brain but have relatively low resolution. Consequently, correct 3D cross-cortical patterns of laminar architecture have never been mapped in histological sections. We developed an automated technique to identify and analyze laminar structure within the high-resolution 3D histological BigBrain. We extracted white matter and pial surfaces, from which we derived histologically verified surfaces at the layer I/II boundary and within layer IV. Layer IV depth was strongly predicted by cortical curvature but varied between areas. This fully automated 3D laminar analysis is an important requirement for bridging high-resolution 2D cytoarchitecture and in vivo 3D neuroimaging. It lays the foundation for in-depth, whole-brain analyses of cortical layering.

A microelectromechanical systems (MEMS) force-displacement transducer for sub-5 nm nanoindentation and adhesion measurements

NASA Astrophysics Data System (ADS)

Zhang, Youfeng; Oh, Yunje; Stauffer, Douglas; Polycarpou, Andreas A.

2018-04-01

We present a highly sensitive force-displacement transducer capable of performing ultra-shallow nanoindentation and adhesion measurements. The transducer utilizes electrostatic actuation and capacitive sensing combined with microelectromechanical fabrication technologies. Air indentation experiments report a root-mean-square (RMS) force resolution of 1.8 nN and an RMS displacement resolution of 0.019 nm. Nanoindentation experiments on a standard fused quartz sample report a practical RMS force resolution of 5 nN and an RMS displacement resolution of 0.05 nm at sub-10 nm indentation depths, indicating that the system has a very low system noise for indentation experiments. The high sensitivity and low noise enables the transducer to obtain high-resolution nanoindentation data at sub-5 nm contact depths. The sensitive force transducer is used to successfully perform nanoindentation measurements on a 14 nm thin film. Adhesion measurements were also performed, clearly capturing the pull-on and pull-off forces during approach and separation of two contacting surfaces.

Super-resolution for asymmetric resolution of FIB-SEM 3D imaging using AI with deep learning.

PubMed

Hagita, Katsumi; Higuchi, Takeshi; Jinnai, Hiroshi

2018-04-12

Scanning electron microscopy equipped with a focused ion beam (FIB-SEM) is a promising three-dimensional (3D) imaging technique for nano- and meso-scale morphologies. In FIB-SEM, the specimen surface is stripped by an ion beam and imaged by an SEM installed orthogonally to the FIB. The lateral resolution is governed by the SEM, while the depth resolution, i.e., the FIB milling direction, is determined by the thickness of the stripped thin layer. In most cases, the lateral resolution is superior to the depth resolution; hence, asymmetric resolution is generated in the 3D image. Here, we propose a new approach based on an image-processing or deep-learning-based method for super-resolution of 3D images with such asymmetric resolution, so as to restore the depth resolution to achieve symmetric resolution. The deep-learning-based method learns from high-resolution sub-images obtained via SEM and recovers low-resolution sub-images parallel to the FIB milling direction. The 3D morphologies of polymeric nano-composites are used as test images, which are subjected to the deep-learning-based method as well as conventional methods. We find that the former yields superior restoration, particularly as the asymmetric resolution is increased. Our super-resolution approach for images having asymmetric resolution enables observation time reduction.

A digital gigapixel large-format tile-scan camera.

PubMed

Ben-Ezra, M

2011-01-01

Although the resolution of single-lens reflex (SLR) and medium-format digital cameras has increased in recent years, applications for cultural-heritage preservation and computational photography require even higher resolutions. Addressing this issue, a large-format cameras' large image planes can achieve very high resolution without compromising pixel size and thus can provide high-quality, high-resolution images.This digital large-format tile scan camera can acquire high-quality, high-resolution images of static scenes. It employs unique calibration techniques and a simple algorithm for focal-stack processing of very large images with significant magnification variations. The camera automatically collects overlapping focal stacks and processes them into a high-resolution, extended-depth-of-field image.

Applying High Resolution Imagery to Understand the Role of Dynamics in the Diminishing Arctic Sea Ice Cover

DTIC Science & Technology

2015-09-30

observations collected by the NASA Operation IceBridge (OIB) project, including high-resolution visible-band imagery (Onana et al., 2013), snow depth ( Newman et...2014; Farrell et al., 2015; Hutchings et al., 2015; Richter-Menge and Farrell, 2014), snow depth ( Newman et al., 2014; Webster et al., 2014), sea ice...with A. Mahoney , H. Eicken and C. Haas on an ONR-funded project "Mass balance of multi-year sea ice in the southern Beaufort Sea". This effort

Cortical fibers orientation mapping using in-vivo whole brain 7 T diffusion MRI.

PubMed

Gulban, Omer F; De Martino, Federico; Vu, An T; Yacoub, Essa; Uğurbil, Kamil; Lenglet, Christophe

2018-05-10

Diffusion MRI of the cortical gray matter is challenging because the micro-environment probed by water molecules is much more complex than within the white matter. High spatial and angular resolutions are therefore necessary to uncover anisotropic diffusion patterns and laminar structures, which provide complementary (e.g. to anatomical and functional MRI) microstructural information about the cortex architectonic. Several ex-vivo and in-vivo MRI studies have recently addressed this question, however predominantly with an emphasis on specific cortical areas. There is currently no whole brain in-vivo data leveraging multi-shell diffusion MRI acquisition at high spatial resolution, and depth dependent analysis, to characterize the complex organization of cortical fibers. Here, we present unique in-vivo human 7T diffusion MRI data, and a dedicated cortical depth dependent analysis pipeline. We leverage the high spatial (1.05 mm isotropic) and angular (198 diffusion gradient directions) resolution of this whole brain dataset to improve cortical fiber orientations mapping, and study neurites (axons and/or dendrites) trajectories across cortical depths. Tangential fibers in superficial cortical depths and crossing fiber configurations in deep cortical depths are identified. Fibers gradually inserting into the gyral walls are visualized, which contributes to mitigating the gyral bias effect. Quantitative radiality maps and histograms in individual subjects and cortex-based aligned datasets further support our results. Copyright © 2018 Elsevier Inc. All rights reserved.

Light-sheet enhanced resolution of light field microscopy for rapid imaging of large volumes

NASA Astrophysics Data System (ADS)

Madrid Wolff, Jorge; Castro, Diego; Arbeláez, Pablo; Forero-Shelton, Manu

2018-02-01

Whole-brain imaging is challenging because it demands microscopes with high temporal and spatial resolution, which are often at odds, especially in the context of large fields of view. We have designed and built a light-sheet microscope with digital micromirror illumination and light-field detection. On the one hand, light sheets provide high resolution optical sectioning on live samples without compromising their viability. On the other hand, light field imaging makes it possible to reconstruct full volumes of relatively large fields of view from a single camera exposure; however, its enhanced temporal resolution comes at the expense of spatial resolution, limiting its applicability. We present an approach to increase the resolution of light field images using DMD-based light sheet illumination. To that end, we develop a method to produce synthetic resolution targets for light field microscopy and a procedure to correct the depth at which planes are refocused with rendering software. We measured the axial resolution as a function of depth and show a three-fold potential improvement with structured illumination, albeit by sacrificing some temporal resolution, also three-fold. This results in an imaging system that may be adjusted to specific needs without having to reassemble and realign it. This approach could be used to image relatively large samples at high rates.

Diffraction-Limited Plenoptic Imaging with Correlated Light

NASA Astrophysics Data System (ADS)

Pepe, Francesco V.; Di Lena, Francesco; Mazzilli, Aldo; Edrei, Eitan; Garuccio, Augusto; Scarcelli, Giuliano; D'Angelo, Milena

2017-12-01

Traditional optical imaging faces an unavoidable trade-off between resolution and depth of field (DOF). To increase resolution, high numerical apertures (NAs) are needed, but the associated large angular uncertainty results in a limited range of depths that can be put in sharp focus. Plenoptic imaging was introduced a few years ago to remedy this trade-off. To this aim, plenoptic imaging reconstructs the path of light rays from the lens to the sensor. However, the improvement offered by standard plenoptic imaging is practical and not fundamental: The increased DOF leads to a proportional reduction of the resolution well above the diffraction limit imposed by the lens NA. In this Letter, we demonstrate that correlation measurements enable pushing plenoptic imaging to its fundamental limits of both resolution and DOF. Namely, we demonstrate maintaining the imaging resolution at the diffraction limit while increasing the depth of field by a factor of 7. Our results represent the theoretical and experimental basis for the effective development of promising applications of plenoptic imaging.

Diffraction-Limited Plenoptic Imaging with Correlated Light.

PubMed

Pepe, Francesco V; Di Lena, Francesco; Mazzilli, Aldo; Edrei, Eitan; Garuccio, Augusto; Scarcelli, Giuliano; D'Angelo, Milena

2017-12-15

Traditional optical imaging faces an unavoidable trade-off between resolution and depth of field (DOF). To increase resolution, high numerical apertures (NAs) are needed, but the associated large angular uncertainty results in a limited range of depths that can be put in sharp focus. Plenoptic imaging was introduced a few years ago to remedy this trade-off. To this aim, plenoptic imaging reconstructs the path of light rays from the lens to the sensor. However, the improvement offered by standard plenoptic imaging is practical and not fundamental: The increased DOF leads to a proportional reduction of the resolution well above the diffraction limit imposed by the lens NA. In this Letter, we demonstrate that correlation measurements enable pushing plenoptic imaging to its fundamental limits of both resolution and DOF. Namely, we demonstrate maintaining the imaging resolution at the diffraction limit while increasing the depth of field by a factor of 7. Our results represent the theoretical and experimental basis for the effective development of promising applications of plenoptic imaging.

Integrated photoacoustic, ultrasound and fluorescence platform for diagnostic medical imaging-proof of concept study with a tissue mimicking phantom.

PubMed

James, Joseph; Murukeshan, Vadakke Matham; Woh, Lye Sun

2014-07-01

The structural and molecular heterogeneities of biological tissues demand the interrogation of the samples with multiple energy sources and provide visualization capabilities at varying spatial resolution and depth scales for obtaining complementary diagnostic information. A novel multi-modal imaging approach that uses optical and acoustic energies to perform photoacoustic, ultrasound and fluorescence imaging at multiple resolution scales from the tissue surface and depth is proposed in this paper. The system comprises of two distinct forms of hardware level integration so as to have an integrated imaging system under a single instrumentation set-up. The experimental studies show that the system is capable of mapping high resolution fluorescence signatures from the surface, optical absorption and acoustic heterogeneities along the depth (>2cm) of the tissue at multi-scale resolution (<1µm to <0.5mm).

A perspective on high-frequency ultrasound for medical applications

NASA Astrophysics Data System (ADS)

Mamou, Jonathan; Aristizába, Orlando; Silverman, Ronald H.; Ketterling, Jeffrey A.

2010-01-01

High-frequency ultrasound (HFU, >15 MHz) is a rapidly developing field. HFU is currently used and investigated for ophthalmologic, dermatologic, intravascular, and small-animal imaging. HFU offers a non-invasive means to investigate tissue at the microscopic level with resolutions often better than 100 μm. However, fine resolution is only obtained over the limited depth-of-field (˜1 mm) of single-element spherically-focused transducers typically used for HFU applications. Another limitation is penetration depth because most biological tissues have large attenuation at high frequencies. In this study, two 5-element annular arrays with center frequencies of 17 and 34 MHz were fabricated and methods were developed to obtain images with increased penetration depth and depth-of-field. These methods were used in ophthalmologic and small-animal imaging studies. Improved blood sensitivity was obtained when a phantom mimicking a vitreous hemorrhage was imaged. Central-nervous systems of 12.5-day-old mouse embryos were imaged in utero and in three dimensions for the first time.

High Resolution Insights into Snow Distribution Provided by Drone Photogrammetry

NASA Astrophysics Data System (ADS)

Redpath, T.; Sirguey, P. J.; Cullen, N. J.; Fitzsimons, S.

2017-12-01

Dynamic in time and space, New Zealand's seasonal snow is largely confined to remote alpine areas, complicating ongoing in situ measurement and characterisation. Improved understanding and modeling of the seasonal snowpack requires fine scale resolution of snow distribution and spatial variability. The potential of remotely piloted aircraft system (RPAS) photogrammetry to resolve spatial and temporal variability of snow depth and water equivalent in a New Zealand alpine catchment is assessed in the Pisa Range, Central Otago. This approach yielded orthophotomosaics and digital surface models (DSM) at 0.05 and 0.15 m spatial resolution, respectively. An autumn reference DSM allowed mapping of winter (02/08/2016) and spring (10/09/2016) snow depth at 0.15 m spatial resolution, via DSM differencing. The consistency and accuracy of the RPAS-derived surface was assessed by comparison of snow-free regions of the spring and autumn DSMs, while accuracy of RPAS retrieved snow depth was assessed with 86 in situ snow probe measurements. Results show a mean vertical residual of 0.024 m between DSMs acquired in autumn and spring. This residual approximated a Laplace distribution, reflecting the influence of large outliers on the small overall bias. Propagation of errors associated with successive DSMs saw snow depth mapped with an accuracy of ± 0.09 m (95% c.l.). Comparing RPAS and in situ snow depth measurements revealed the influence of geo-location uncertainty and interactions between vegetation and the snowpack on snow depth uncertainty and bias. Semi-variogram analysis revealed that the RPAS outperformed systematic in situ measurements in resolving fine scale spatial variability. Despite limitations accompanying RPAS photogrammetry, this study demonstrates a repeatable means of accurately mapping snow depth for an entire, yet relatively small, hydrological basin ( 0.5 km2), at high resolution. Resolving snowpack features associated with re-distribution and preferential accumulation and ablation, snow depth maps provide geostatistically robust insights into seasonal snow processes, with unprecedented detail. Such data may enhance understanding of physical processes controlling spatial and temporal distribution of seasonal snow, and their relative importance at varying spatial and temporal scales.

Development of Extended-Depth Swept Source Optical Coherence Tomography for Applications in Ophthalmic Imaging of the Anterior and Posterior Eye

NASA Astrophysics Data System (ADS)

Dhalla, Al-Hafeez Zahir

Optical coherence tomography (OCT) is a non-invasive optical imaging modality that provides micron-scale resolution of tissue micro-structure over depth ranges of several millimeters. This imaging technique has had a profound effect on the field of ophthalmology, wherein it has become the standard of care for the diagnosis of many retinal pathologies. Applications of OCT in the anterior eye, as well as for imaging of coronary arteries and the gastro-intestinal tract, have also shown promise, but have not yet achieved widespread clinical use. The usable imaging depth of OCT systems is most often limited by one of three factors: optical attenuation, inherent imaging range, or depth-of-focus. The first of these, optical attenuation, stems from the limitation that OCT only detects singly-scattered light. Thus, beyond a certain penetration depth into turbid media, essentially all of the incident light will have been multiply scattered, and can no longer be used for OCT imaging. For many applications (especially retinal imaging), optical attenuation is the most restrictive of the three imaging depth limitations. However, for some applications, especially anterior segment, cardiovascular (catheter-based) and GI (endoscopic) imaging, the usable imaging depth is often not limited by optical attenuation, but rather by the inherent imaging depth of the OCT systems. This inherent imaging depth, which is specific to only Fourier Domain OCT, arises due to two factors: sensitivity fall-off and the complex conjugate ambiguity. Finally, due to the trade-off between lateral resolution and axial depth-of-focus inherent in diffractive optical systems, additional depth limitations sometimes arises in either high lateral resolution or extended depth OCT imaging systems. The depth-of-focus limitation is most apparent in applications such as adaptive optics (AO-) OCT imaging of the retina, and extended depth imaging of the ocular anterior segment. In this dissertation, techniques for extending the imaging range of OCT systems are developed. These techniques include the use of a high spectral purity swept source laser in a full-field OCT system, as well as the use of a peculiar phenomenon known as coherence revival to resolve the complex conjugate ambiguity in swept source OCT. In addition, a technique for extending the depth of focus of OCT systems by using a polarization-encoded, dual-focus sample arm is demonstrated. Along the way, other related advances are also presented, including the development of techniques to reduce crosstalk and speckle artifacts in full-field OCT, and the use of fast optical switches to increase the imaging speed of certain low-duty cycle swept source OCT systems. Finally, the clinical utility of these techniques is demonstrated by combining them to demonstrate high-speed, high resolution, extended-depth imaging of both the anterior and posterior eye simultaneously and in vivo.

Focal depth measurement of scanning helium ion microscope

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Hongxuan, E-mail: Guo.hongxuan@nims.go.jp; Itoh, Hiroshi; Wang, Chunmei

2014-07-14

When facing the challenges of critical dimension measurement of complicated nanostructures, such as of the three dimension integrated circuit, characterization of the focal depth of microscopes is important. In this Letter, we developed a method for characterizing the focal depth of a scanning helium ion microscope (HIM) by using an atomic force microscope tip characterizer (ATC). The ATC was tilted in a sample chamber at an angle to the scanning plan. Secondary electron images (SEIs) were obtained at different positions of the ATC. The edge resolution of the SEIs shows the nominal diameters of the helium ion beam at differentmore » focal levels. With this method, the nominal shapes of the helium ion beams were obtained with different apertures. Our results show that a small aperture is necessary to get a high spatial resolution and high depth of field images with HIM. This work provides a method for characterizing and improving the performance of HIM.« less

Fourier domain low coherence interferometry for detection of early colorectal cancer development in the AOM rat model

NASA Astrophysics Data System (ADS)

Robles, Francisco E.; Zhu, Yizheng; Lee, Jin; Sharma, Sheela; Wax, Adam

2011-03-01

We present Fourier domain low coherence interferometry (fLCI) applied to the detection of preneoplastic changes in the colon using the ex-vivo azoxymethane (AOM) rat carcinogenesis model. fLCI measures depth resolved spectral oscillations, also known as local oscillations, resulting from coherent fields induced by the scattering of cell nuclei. The depth resolution of fLCI permits nuclear morphology measurements within thick tissues, making the technique sensitive to the earliest stages of precancerous development. To achieve depth resolved spectroscopic analysis, we use the dual window method, which obtains simultaneously high spectral and depth resolution and yields access to the local oscillations. The results show highly statistically significant differences between the AOM-treated and control group samples. Further, the results suggest that fLCI may be used to detect the field effect of carcinogenesis, in addition to identifying specific areas where more advanced neoplastic development has occurred.

Focal depth measurement of scanning helium ion microscope

NASA Astrophysics Data System (ADS)

Guo, Hongxuan; Itoh, Hiroshi; Wang, Chunmei; Zhang, Han; Fujita, Daisuke

2014-07-01

When facing the challenges of critical dimension measurement of complicated nanostructures, such as of the three dimension integrated circuit, characterization of the focal depth of microscopes is important. In this Letter, we developed a method for characterizing the focal depth of a scanning helium ion microscope (HIM) by using an atomic force microscope tip characterizer (ATC). The ATC was tilted in a sample chamber at an angle to the scanning plan. Secondary electron images (SEIs) were obtained at different positions of the ATC. The edge resolution of the SEIs shows the nominal diameters of the helium ion beam at different focal levels. With this method, the nominal shapes of the helium ion beams were obtained with different apertures. Our results show that a small aperture is necessary to get a high spatial resolution and high depth of field images with HIM. This work provides a method for characterizing and improving the performance of HIM.

Scanning photoelectron microscope for nanoscale three-dimensional spatial-resolved electron spectroscopy for chemical analysis.

PubMed

Horiba, K; Nakamura, Y; Nagamura, N; Toyoda, S; Kumigashira, H; Oshima, M; Amemiya, K; Senba, Y; Ohashi, H

2011-11-01

In order to achieve nondestructive observation of the three-dimensional spatially resolved electronic structure of solids, we have developed a scanning photoelectron microscope system with the capability of depth profiling in electron spectroscopy for chemical analysis (ESCA). We call this system 3D nano-ESCA. For focusing the x-ray, a Fresnel zone plate with a diameter of 200 μm and an outermost zone width of 35 nm is used. In order to obtain the angular dependence of the photoelectron spectra for the depth-profile analysis without rotating the sample, we adopted a modified VG Scienta R3000 analyzer with an acceptance angle of 60° as a high-resolution angle-resolved electron spectrometer. The system has been installed at the University-of-Tokyo Materials Science Outstation beamline, BL07LSU, at SPring-8. From the results of the line-scan profiles of the poly-Si/high-k gate patterns, we achieved a total spatial resolution better than 70 nm. The capability of our system for pinpoint depth-profile analysis and high-resolution chemical state analysis is demonstrated. © 2011 American Institute of Physics

Age depth model construction of the upper section of ICDP Dead Sea Deep Drilling Project based on the high-resolution 14C dating

NASA Astrophysics Data System (ADS)

Kitagawa, H.; Nakamura, T.; Neugebauer, I.; Schwab, M. J.; Brauer, A.; Goldstein, S. L.; Stein, M.

2014-12-01

To reconstruct environmental, climatic and tectonic histories of the Levant, a deep drilling has been accomplished in the northern basin of the Dead Sea during the fall winter of 2010-2011 by the Dead Sea Deep Drilling Project (DSDDP) in the framework of the ICDP program. The sediment cores from site 5017-1 (water depth of ~300 m) recorded the paleoenvironmental and paleohydrological changes in the Dead Sea and the Levant during the last two glacial-interglacial cycles (Neugebauer et al., QSR in press). To provide precise timing of sedimentological - limnological events in the lake and its watershed, and more critically the relative timing of these events, radiocarbon dating of >70 well-preserved terrestrial plants and some carbonate deposits from the upper 150 m long section of the sediment core were performed. Based on the high-resolution radiocarbon dating, a statistical age-depth model was constructed with assumptions on the deposition condition and the radiocarbon age offset of carbonate samples. We discuss the practicality and the limitation of the age-depth model toward interpreting the high-resolution records of environmental, climatic and tectonic events recorded in the long sediment cores from site 5017-1.

Evaluation of multi-resolution satellite sensors for assessing water quality and bottom depth of Lake Garda.

PubMed

Giardino, Claudia; Bresciani, Mariano; Cazzaniga, Ilaria; Schenk, Karin; Rieger, Patrizia; Braga, Federica; Matta, Erica; Brando, Vittorio E

2014-12-15

In this study we evaluate the capabilities of three satellite sensors for assessing water composition and bottom depth in Lake Garda, Italy. A consistent physics-based processing chain was applied to Moderate Resolution Imaging Spectroradiometer (MODIS), Landsat-8 Operational Land Imager (OLI) and RapidEye. Images gathered on 10 June 2014 were corrected for the atmospheric effects with the 6SV code. The computed remote sensing reflectance (Rrs) from MODIS and OLI were converted into water quality parameters by adopting a spectral inversion procedure based on a bio-optical model calibrated with optical properties of the lake. The same spectral inversion procedure was applied to RapidEye and to OLI data to map bottom depth. In situ measurements of Rrs and of concentrations of water quality parameters collected in five locations were used to evaluate the models. The bottom depth maps from OLI and RapidEye showed similar gradients up to 7 m (r = 0.72). The results indicate that: (1) the spatial and radiometric resolutions of OLI enabled mapping water constituents and bottom properties; (2) MODIS was appropriate for assessing water quality in the pelagic areas at a coarser spatial resolution; and (3) RapidEye had the capability to retrieve bottom depth at high spatial resolution. Future work should evaluate the performance of the three sensors in different bio-optical conditions.

Micro-optical system based 3D imaging for full HD depth image capturing

NASA Astrophysics Data System (ADS)

Park, Yong-Hwa; Cho, Yong-Chul; You, Jang-Woo; Park, Chang-Young; Yoon, Heesun; Lee, Sang-Hun; Kwon, Jong-Oh; Lee, Seung-Wan

2012-03-01

20 Mega-Hertz-switching high speed image shutter device for 3D image capturing and its application to system prototype are presented. For 3D image capturing, the system utilizes Time-of-Flight (TOF) principle by means of 20MHz high-speed micro-optical image modulator, so called 'optical shutter'. The high speed image modulation is obtained using the electro-optic operation of the multi-layer stacked structure having diffractive mirrors and optical resonance cavity which maximizes the magnitude of optical modulation. The optical shutter device is specially designed and fabricated realizing low resistance-capacitance cell structures having small RC-time constant. The optical shutter is positioned in front of a standard high resolution CMOS image sensor and modulates the IR image reflected from the object to capture a depth image. Suggested novel optical shutter device enables capturing of a full HD depth image with depth accuracy of mm-scale, which is the largest depth image resolution among the-state-of-the-arts, which have been limited up to VGA. The 3D camera prototype realizes color/depth concurrent sensing optical architecture to capture 14Mp color and full HD depth images, simultaneously. The resulting high definition color/depth image and its capturing device have crucial impact on 3D business eco-system in IT industry especially as 3D image sensing means in the fields of 3D camera, gesture recognition, user interface, and 3D display. This paper presents MEMS-based optical shutter design, fabrication, characterization, 3D camera system prototype and image test results.

High-resolution depth profiling using a range-gated CMOS SPAD quanta image sensor.

PubMed

Ren, Ximing; Connolly, Peter W R; Halimi, Abderrahim; Altmann, Yoann; McLaughlin, Stephen; Gyongy, Istvan; Henderson, Robert K; Buller, Gerald S

2018-03-05

A CMOS single-photon avalanche diode (SPAD) quanta image sensor is used to reconstruct depth and intensity profiles when operating in a range-gated mode used in conjunction with pulsed laser illumination. By designing the CMOS SPAD array to acquire photons within a pre-determined temporal gate, the need for timing circuitry was avoided and it was therefore possible to have an enhanced fill factor (61% in this case) and a frame rate (100,000 frames per second) that is more difficult to achieve in a SPAD array which uses time-correlated single-photon counting. When coupled with appropriate image reconstruction algorithms, millimeter resolution depth profiles were achieved by iterating through a sequence of temporal delay steps in synchronization with laser illumination pulses. For photon data with high signal-to-noise ratios, depth images with millimeter scale depth uncertainty can be estimated using a standard cross-correlation approach. To enhance the estimation of depth and intensity images in the sparse photon regime, we used a bespoke clustering-based image restoration strategy, taking into account the binomial statistics of the photon data and non-local spatial correlations within the scene. For sparse photon data with total exposure times of 75 ms or less, the bespoke algorithm can reconstruct depth images with millimeter scale depth uncertainty at a stand-off distance of approximately 2 meters. We demonstrate a new approach to single-photon depth and intensity profiling using different target scenes, taking full advantage of the high fill-factor, high frame rate and large array format of this range-gated CMOS SPAD array.

Optical coherence microscope for invariant high resolution in vivo skin imaging

NASA Astrophysics Data System (ADS)

Murali, S.; Lee, K. S.; Meemon, P.; Rolland, J. P.

2008-02-01

A non-invasive, reliable and affordable imaging system with the capability of detecting skin pathologies such as skin cancer would be a valuable tool to use for pre-screening and diagnostic applications. Optical Coherence Microscopy (OCM) is emerging as a building block for in vivo optical diagnosis, where high numerical aperture optics is introduced in the sample arm to achieve high lateral resolution. While high numerical aperture optics enables realizing high lateral resolution at the focus point, dynamic focusing is required to maintain the target lateral resolution throughout the depth of the sample being imaged. In this paper, we demonstrate the ability to dynamically focus in real-time with no moving parts to a depth of up to 2mm in skin-equivalent tissue in order to achieve 3.5μm lateral resolution throughout an 8 cubic millimeter sample. The built-in dynamic focusing ability is provided by an addressable liquid lens embedded in custom-designed optics which was designed for a broadband laser source of 120 nm bandwidth centered at around 800nm. The imaging probe was designed to be low-cost and portable. Design evaluation and tolerance analysis results show that the probe is robust to manufacturing errors and produces consistent high performance throughout the imaging volume.

High resolution and deep tissue imaging using a near infrared acoustic resolution photoacoustic microscopy

NASA Astrophysics Data System (ADS)

Moothanchery, Mohesh; Sharma, Arunima; Periyasamy, Vijitha; Pramanik, Manojit

2018-02-01

It is always a great challenge for pure optical techniques to maintain good resolution and imaging depth at the same time. Photoacoustic imaging is an emerging technique which can overcome the limitation by pulsed light illumination and acoustic detection. Here, we report a Near Infrared Acoustic-Resolution Photoacoustic Microscopy (NIR-AR-PAM) systm with 30 MHz transducer and 1064 nm illumination which can achieve a lateral resolution of around 88 μm and imaging depth of 9.2 mm. Compared to visible light NIR beam can penetrate deeper in biological tissue due to weaker optical attenuation. In this work, we also demonstrated the in vivo imaging capabilty of NIRARPAM by near infrared detection of SLN with black ink as exogenous photoacoustic contrast agent in a rodent model.

Off-axis full-field swept-source optical coherence tomography using holographic refocusing

NASA Astrophysics Data System (ADS)

Hillmann, Dierck; Franke, Gesa; Hinkel, Laura; Bonin, Tim; Koch, Peter; Hüttmann, Gereon

2013-03-01

We demonstrate a full-field swept-source OCT using an off-axis geometry of the reference illumination. By using holographic refocusing techniques, a uniform lateral resolution is achieved over the measurement depth of approximately 80 Rayleigh lengths. Compared to a standard on-axis setup, artifacts and autocorrelation signals are suppressed and the measurement depth is doubled by resolving the complex conjugate ambiguity. Holographic refocusing was done efficiently by Fourier-domain resampling as demonstrated before in inverse scattering and holoscopy. It allowed to reconstruct a complete volume with about 10μm resolution over the complete measurement depth of more than 10mm. Off-axis full-field swept-source OCT enables high measurement depths, spanning many Rayleigh lengths with reduced artifacts.

SU-E-J-197: Investigation of Microsoft Kinect 2.0 Depth Resolution for Patient Motion Tracking

DOE Office of Scientific and Technical Information (OSTI.GOV)

Silverstein, E; Snyder, M

2015-06-15

Purpose: Investigate the use of the Kinect 2.0 for patient motion tracking during radiotherapy by studying spatial and depth resolution capabilities. Methods: Using code written in C#, depth map data was abstracted from the Kinect to create an initial depth map template indicative of the initial position of an object to be compared to the depth map of the object over time. To test this process, simple setup was created in which two objects were imaged: a 40 cm × 40 cm board covered in non reflective material and a 15 cm × 26 cm textbook with a slightly reflective,more » glossy cover. Each object, imaged and measured separately, was placed on a movable platform with object to camera distance measured. The object was then moved a specified amount to ascertain whether the Kinect’s depth camera would visualize the difference in position of the object. Results: Initial investigations have shown the Kinect depth resolution is dependent on the object to camera distance. Measurements indicate that movements as small as 1 mm can be visualized for objects as close as 50 cm away. This depth resolution decreases linearly with object to camera distance. At 4 m, the depth resolution had decreased to observe a minimum movement of 1 cm. Conclusion: The improved resolution and advanced hardware of the Kinect 2.0 allows for increase of depth resolution over the Kinect 1.0. Although obvious that the depth resolution should decrease with increasing distance from an object given the decrease in number of pixels representing said object, the depth resolution at large distances indicates its usefulness in a clinical setting.« less

Performance of a high-resolution depth-encoding PET detector module using linearly-graded SiPM arrays

NASA Astrophysics Data System (ADS)

Du, Junwei; Bai, Xiaowei; Gola, Alberto; Acerbi, Fabio; Ferri, Alessandro; Piemonte, Claudio; Yang, Yongfeng; Cherry, Simon R.

2018-02-01

The goal of this study was to exploit the excellent spatial resolution characteristics of a position-sensitive silicon photomultiplier (SiPM) and develop a high-resolution depth-of-interaction (DOI) encoding positron emission tomography (PET) detector module. The detector consists of a 30  ×  30 array of 0.445  ×  0.445  ×  20 mm3 polished LYSO crystals coupled to two 15.5  ×  15.5 mm2 linearly-graded SiPM (LG-SiPM) arrays at both ends. The flood histograms show that all the crystals in the LYSO array can be resolved. The energy resolution, the coincidence timing resolution and the DOI resolution were 21.8  ±  5.8%, 1.23  ±  0.10 ns and 3.8  ±  1.2 mm, respectively, at a temperature of -10 °C and a bias voltage of 35.0 V. The performance did not degrade significantly for event rates of up to 130 000 counts s-1. This detector represents an attractive option for small-bore PET scanner designs that simultaneously emphasize high spatial resolution and high detection efficiency, important, for example, in preclinical imaging of the rodent brain with neuroreceptor ligands.

CZT drift strip detectors for high energy astrophysics

NASA Astrophysics Data System (ADS)

Kuvvetli, I.; Budtz-Jørgensen, C.; Caroli, E.; Auricchio, N.

2010-12-01

Requirements for X- and gamma ray detectors for future High Energy Astrophysics missions include high detection efficiency and good energy resolution as well as fine position sensitivity even in three dimensions. We report on experimental investigations on the CZT drift detector developed DTU Space. It is operated in the planar transverse field (PTF) mode, with the purpose of demonstrating that the good energy resolution of the CZT drift detector can be combined with the high efficiency of the PTF configuration. Furthermore, we demonstrated and characterized the 3D sensing capabilities of this detector configuration. The CZT drift strip detector (10 mm×10 mm×2.5 mm) was characterized in both standard illumination geometry, Photon Parallel Field (PPF) configuration and in PTF configuration. The detection efficiency and energy resolution are compared for both configurations . The PTF configuration provided a higher efficiency in agreement with calculations. The detector energy resolution was found to be the same (3 keV FWHM at 122 keV) in both in PPF and PTF . The depth sensing capabilities offered by drift strip detectors was investigated by illuminating the detector using a collimated photon beam of 57Co radiation in PTF configuration. The width (300μm FWHM at 122 keV) of the measured depth distributions was almost equal to the finite beam size. However, the data indicate that the best achievable depth resolution for the CZT drift detector is 90μm FWHM at 122 keV and that it is determined by the electronic noise from the setup.

Aerosol Optical Depth Retrievals From High-Resolution Commercial Satellite Imagery Over Areas of High Surface Reflectance

NASA Astrophysics Data System (ADS)

Vincent, D. A.; Nielsen, K. E.; Durkee, P. A.; Reid, J. S.

2005-12-01

The advancement and proliferation of high-resolution commercial imaging satellites presents a new opportunity for overland aerosol characterization. Current aerosol optical depth retrieval methods typically fail over areas with high surface reflectance, such as urban areas and deserts, since the upwelling radiance due to scattering by aerosols is small compared to the radiance resulting from surface reflection. The method proposed here uses shadows cast on the surface to exploit the differences between radiance from the adjacent shaded and unshaded areas of the scene. Shaded areas of the scene are primarily illuminated by diffuse irradiance that is scattered downward from the atmosphere, while unshaded areas are illuminated by both diffuse and direct solar irradiance. The first-order difference between the shaded and unshaded areas is the direct component. Given uniform surface reflectance for the shaded and unshaded areas, the difference in reflected radiance measured by a satellite sensor is related to the direct transmission of solar radiation and inversely proportional to total optical depth. Using an iterative approach, surface reflectance and mean aerosol reflectance can be partitioned to refine the retrieved total optical depth. Aerosol optical depth can then be determined from its contribution to the total atmospheric optical depth (following correction for molecular Rayleigh scattering). Intitial results based on QuickBird imagery and AERONET data collected during the United Arab Emirates Unified Aerosol Experiment (UAE2) indicate that aerosol optical depth retrievals are possible in the visible and near-infrared region with an accuracy of ~0.04.

Computational adaptive optics for broadband optical interferometric tomography of biological tissue.

PubMed

Adie, Steven G; Graf, Benedikt W; Ahmad, Adeel; Carney, P Scott; Boppart, Stephen A

2012-05-08

Aberrations in optical microscopy reduce image resolution and contrast, and can limit imaging depth when focusing into biological samples. Static correction of aberrations may be achieved through appropriate lens design, but this approach does not offer the flexibility of simultaneously correcting aberrations for all imaging depths, nor the adaptability to correct for sample-specific aberrations for high-quality tomographic optical imaging. Incorporation of adaptive optics (AO) methods have demonstrated considerable improvement in optical image contrast and resolution in noninterferometric microscopy techniques, as well as in optical coherence tomography. Here we present a method to correct aberrations in a tomogram rather than the beam of a broadband optical interferometry system. Based on Fourier optics principles, we correct aberrations of a virtual pupil using Zernike polynomials. When used in conjunction with the computed imaging method interferometric synthetic aperture microscopy, this computational AO enables object reconstruction (within the single scattering limit) with ideal focal-plane resolution at all depths. Tomographic reconstructions of tissue phantoms containing subresolution titanium-dioxide particles and of ex vivo rat lung tissue demonstrate aberration correction in datasets acquired with a highly astigmatic illumination beam. These results also demonstrate that imaging with an aberrated astigmatic beam provides the advantage of a more uniform depth-dependent signal compared to imaging with a standard gaussian beam. With further work, computational AO could enable the replacement of complicated and expensive optical hardware components with algorithms implemented on a standard desktop computer, making high-resolution 3D interferometric tomography accessible to a wider group of users and nonspecialists.

High Spatio-Temporal Resolution Bathymetry Estimation and Morphology

NASA Astrophysics Data System (ADS)

Bergsma, E. W. J.; Conley, D. C.; Davidson, M. A.; O'Hare, T. J.

2015-12-01

In recent years, bathymetry estimates using video images have become increasingly accurate. With the cBathy code (Holman et al., 2013) fully operational, bathymetry results with 0.5 metres accuracy have been regularly obtained at Duck, USA. cBathy is based on observations of the dominant frequencies and wavelengths of surface wave motions and estimates the depth (and hence allows inference of bathymetry profiles) based on linear wave theory. Despite the good performance at Duck, large discrepancies were found related to tidal elevation and camera height (Bergsma et al., 2014) and on the camera boundaries. A tide dependent floating pixel and camera boundary solution have been proposed to overcome these issues (Bergsma et al., under review). The video-data collection is set estimate depths hourly on a grid with resolution in the order of 10x25 meters. Here, the application of the cBathy at Porthtowan in the South-West of England is presented. Hourly depth estimates are combined and analysed over a period of 1.5 years (2013-2014). In this work the focus is on the sub-tidal region, where the best cBathy results are achieved. The morphology of the sub-tidal bar is tracked with high spatio-temporal resolution on short and longer time scales. Furthermore, the impact of the storm and reset (sudden and large changes in bathymetry) of the sub-tidal area is clearly captured with the depth estimations. This application shows that the high spatio-temporal resolution of cBathy makes it a powerful tool for coastal research and coastal zone management.

Photothermal optical coherence tomography of epidermal growth factor receptor in live cells using immunotargeted gold nanospheres

NASA Astrophysics Data System (ADS)

Skala, Melissa C.; Crow, Matthew J.; Wax, Adam; Izatt, Joseph A.

2009-02-01

Molecular imaging is a powerful tool for investigating disease processes and potential therapies in both in vivo and in vitro systems. However, high resolution molecular imaging has been limited to relatively shallow penetration depths that can be accessed with microscopy. Optical coherence tomography (OCT) is an optical analogue to ultrasound with relatively good penetration depth (1-2 mm) and resolution (~1-10 μm). We have developed and characterized photothermal OCT as a molecular contrast mechanism that allows for high resolution molecular imaging at deeper penetration depths than microscopy. Our photothermal system consists of an amplitude-modulated heating beam that spatially overlaps with the focused spot of the sample arm of a spectral-domain OCT microscope. Validation experiments in tissue-like phantoms containing gold nanospheres that absorb at 532 nm revealed a sensitivity of 14 parts per million nanospheres (weight/weight) in a tissue-like environment. The nanospheres were then conjugated to anti-EGFR, and molecular targeting was confirmed in cells that over-express EGFR (MDA-MB-468) and cells that express low levels of EGFR (MDA-MB-435). Molecular imaging in three-dimensional tissue constructs was confirmed with a significantly lower photothermal signal (p<0.0001) from the constructs composed of cells that express low levels of EGFR compared to the over-expressing cell constructs (300% signal increase). This technique could potentially augment confocal and multiphoton microscopy as a method for deep-tissue, depth-resolved molecular imaging with relatively high resolution and target sensitivity, without photobleaching or cytotoxicity.

Chirp-coded excitation imaging with a high-frequency ultrasound annular array.

PubMed

Mamou, Jonathan; Ketterling, Jeffrey A; Silverman, Ronald H

2008-02-01

High-frequency ultrasound (HFU, > 15 MHz) is an effective means of obtaining fine-resolution images of biological tissues for applications such as opthalmologic, dermatologic, and small animal imaging. HFU has two inherent drawbacks. First, HFU images have a limited depth of field (DOF) because of the short wavelength and the low fixed F-number of conventional HFU transducers. Second, HFU can be used to image only a few millimeters deep into a tissue because attenuation increases with frequency. In this study, a five-element annular array was used in conjunction with a synthetic-focusing algorithm to extend the DOF. The annular array had an aperture of 10 mm, a focal length of 31 mm, and a center frequency of 17 MHz. To increase penetration depth, 8-micros, chirp-coded signals were designed, input into an arbitrary waveform generator, and used to excite each array element. After data acquisition, the received signals were linearly filtered to restore axial resolution and increase the SNR. To compare the chirpcoded imaging method with conventional impulse imaging in terms of resolution, a 25-microm diameter wire was scanned and the -6-dB axial and lateral resolutions were computed at depths ranging from 20.5 to 40.5 mm. The results demonstrated that chirp-coded excitation did not degrade axial or lateral resolution. A tissue-mimicking phantom containing 10-microm glass beads was scanned, and backscattered signals were analyzed to evaluate SNR and penetration depth. Finally, ex vivo ophthalmic images were formed and chirpcoded images showed features that were not visible in conventional impulse images.

CINCH (confocal incoherent correlation holography) super resolution fluorescence microscopy based upon FINCH (Fresnel incoherent correlation holography).

PubMed

Siegel, Nisan; Storrie, Brian; Bruce, Marc; Brooker, Gary

2015-02-07

FINCH holographic fluorescence microscopy creates high resolution super-resolved images with enhanced depth of focus. The simple addition of a real-time Nipkow disk confocal image scanner in a conjugate plane of this incoherent holographic system is shown to reduce the depth of focus, and the combination of both techniques provides a simple way to enhance the axial resolution of FINCH in a combined method called "CINCH". An important feature of the combined system allows for the simultaneous real-time image capture of widefield and holographic images or confocal and confocal holographic images for ready comparison of each method on the exact same field of view. Additional GPU based complex deconvolution processing of the images further enhances resolution.

Photoacoustic microscopy and computed tomography: from bench to bedside

PubMed Central

Wang, Lihong V.; Gao, Liang

2014-01-01

Photoacoustic imaging (PAI) of biological tissue has seen immense growth in the past decade, providing unprecedented spatial resolution and functional information at depths in the optical diffusive regime. PAI uniquely combines the advantages of optical excitation and acoustic detection. The hybrid imaging modality features high sensitivity to optical absorption and wide scalability of spatial resolution with the desired imaging depth. Here we first summarize the fundamental principles underpinning the technology, then highlight its practical implementation, and finally discuss recent advances towards clinical translation. PMID:24905877

High Resolution PET Imaging Probe for the Detection, Molecular Characterization and Treatment Monitoring of Prostate Cancer

DTIC Science & Technology

2012-07-01

Jitter results from electronic noise and from the fact that the shape of the detector signal used for timing can vary considerably depending on the...photomultiplier technology, several “probe” detectors were developed. It was predicted, and subsequently shown, that probes having good position...high spatial resolution for prostate imaging. Practical proof-of-concept detectors with good depth-of-interactions resolution have been developed and

High sensitivity optical molecular imaging system

NASA Astrophysics Data System (ADS)

An, Yu; Yuan, Gao; Huang, Chao; Jiang, Shixin; Zhang, Peng; Wang, Kun; Tian, Jie

2018-02-01

Optical Molecular Imaging (OMI) has the advantages of high sensitivity, low cost and ease of use. By labeling the regions of interest with fluorescent or bioluminescence probes, OMI can noninvasively obtain the distribution of the probes in vivo, which play the key role in cancer research, pharmacokinetics and other biological studies. In preclinical and clinical application, the image depth, resolution and sensitivity are the key factors for researchers to use OMI. In this paper, we report a high sensitivity optical molecular imaging system developed by our group, which can improve the imaging depth in phantom to nearly 5cm, high resolution at 2cm depth, and high image sensitivity. To validate the performance of the system, special designed phantom experiments and weak light detection experiment were implemented. The results shows that cooperated with high performance electron-multiplying charge coupled device (EMCCD) camera, precision design of light path system and high efficient image techniques, our OMI system can simultaneously collect the light-emitted signals generated by fluorescence molecular imaging, bioluminescence imaging, Cherenkov luminance and other optical imaging modality, and observe the internal distribution of light-emitting agents fast and accurately.

Direct band gap measurement of Cu(In,Ga)(Se,S){sub 2} thin films using high-resolution reflection electron energy loss spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heo, Sung; College of Information and Communication Engineering, Sungkyunkwan University, Cheoncheon-dong 300, Jangan-gu, Suwon 440-746; Lee, Hyung-Ik

2015-06-29

To investigate the band gap profile of Cu(In{sub 1−x},Ga{sub x})(Se{sub 1−y}S{sub y}){sub 2} of various compositions, we measured the band gap profile directly as a function of in-depth using high-resolution reflection energy loss spectroscopy (HR-REELS), which was compared with the band gap profile calculated based on the auger depth profile. The band gap profile is a double-graded band gap as a function of in-depth. The calculated band gap obtained from the auger depth profile seems to be larger than that by HR-REELS. Calculated band gaps are to measure the average band gap of the spatially different varying compositions with respectmore » to considering its void fraction. But, the results obtained using HR-REELS are to be affected by the low band gap (i.e., out of void) rather than large one (i.e., near void). Our findings suggest an analytical method to directly determine the band gap profile as function of in-depth.« less

High-resolution harmonic motion imaging (HR-HMI) for tissue biomechanical property characterization

PubMed Central

Ma, Teng; Qian, Xuejun; Chiu, Chi Tat; Yu, Mingyue; Jung, Hayong; Tung, Yao-Sheng; Shung, K. Kirk

2015-01-01

Background Elastography, capable of mapping the biomechanical properties of biological tissues, serves as a useful technique for clinicians to perform disease diagnosis and determine stages of many diseases. Many acoustic radiation force (ARF) based elastography, including acoustic radiation force impulse (ARFI) imaging and harmonic motion imaging (HMI), have been developed to remotely assess the elastic properties of tissues. However, due to the lower operating frequencies of these approaches, their spatial resolutions are insufficient for revealing stiffness distribution on small scale applications, such as cancerous tumor margin detection, atherosclerotic plaque composition analysis and ophthalmologic tissue characterization. Though recently developed ARF-based optical coherence elastography (OCE) methods open a new window for the high resolution elastography, shallow imaging depths significantly limit their usefulness in clinics. Methods The aim of this study is to develop a high-resolution HMI method to assess the tissue biomechanical properties with acceptable field of view (FOV) using a 4 MHz ring transducer for efficient excitation and a 40 MHz needle transducer for accurate detection. Under precise alignment of two confocal transducers, the high-resolution HMI system has a lateral resolution of 314 µm and an axial resolution of 
147 µm with an effective FOV of 2 mm in depth. Results The performance of this high resolution imaging system was validated on the agar-based tissue mimicking phantoms with different stiffness distributions. These data demonstrated the imaging system’s improved resolution and sensitivity on differentiating materials with varying stiffness. In addition, ex vivo imaging of a human atherosclerosis coronary artery demonstrated the capability of high resolution HMI in identifying layer-specific structures and characterizing atherosclerotic plaques based on their stiffness differences. Conclusions All together high resolution HMI appears to be a promising ultrasound-only technology for characterizing tissue biomechanical properties at the microstructural level to improve the image-based diseases diagnosis in multiple clinical applications. PMID:25694960

High-resolution harmonic motion imaging (HR-HMI) for tissue biomechanical property characterization.

PubMed

Ma, Teng; Qian, Xuejun; Chiu, Chi Tat; Yu, Mingyue; Jung, Hayong; Tung, Yao-Sheng; Shung, K Kirk; Zhou, Qifa

2015-02-01

Elastography, capable of mapping the biomechanical properties of biological tissues, serves as a useful technique for clinicians to perform disease diagnosis and determine stages of many diseases. Many acoustic radiation force (ARF) based elastography, including acoustic radiation force impulse (ARFI) imaging and harmonic motion imaging (HMI), have been developed to remotely assess the elastic properties of tissues. However, due to the lower operating frequencies of these approaches, their spatial resolutions are insufficient for revealing stiffness distribution on small scale applications, such as cancerous tumor margin detection, atherosclerotic plaque composition analysis and ophthalmologic tissue characterization. Though recently developed ARF-based optical coherence elastography (OCE) methods open a new window for the high resolution elastography, shallow imaging depths significantly limit their usefulness in clinics. The aim of this study is to develop a high-resolution HMI method to assess the tissue biomechanical properties with acceptable field of view (FOV) using a 4 MHz ring transducer for efficient excitation and a 40 MHz needle transducer for accurate detection. Under precise alignment of two confocal transducers, the high-resolution HMI system has a lateral resolution of 314 µm and an axial resolution of 
147 µm with an effective FOV of 2 mm in depth. The performance of this high resolution imaging system was validated on the agar-based tissue mimicking phantoms with different stiffness distributions. These data demonstrated the imaging system's improved resolution and sensitivity on differentiating materials with varying stiffness. In addition, ex vivo imaging of a human atherosclerosis coronary artery demonstrated the capability of high resolution HMI in identifying layer-specific structures and characterizing atherosclerotic plaques based on their stiffness differences. All together high resolution HMI appears to be a promising ultrasound-only technology for characterizing tissue biomechanical properties at the microstructural level to improve the image-based diseases diagnosis in multiple clinical applications.

Spectral Ripple Discrimination in Normal-Hearing Infants.

PubMed

Horn, David L; Won, Jong Ho; Rubinstein, Jay T; Werner, Lynne A

Spectral resolution is a correlate of open-set speech understanding in postlingually deaf adults and prelingually deaf children who use cochlear implants (CIs). To apply measures of spectral resolution to assess device efficacy in younger CI users, it is necessary to understand how spectral resolution develops in normal-hearing children. In this study, spectral ripple discrimination (SRD) was used to measure listeners' sensitivity to a shift in phase of the spectral envelope of a broadband noise. Both resolution of peak to peak location (frequency resolution) and peak to trough intensity (across-channel intensity resolution) are required for SRD. SRD was measured as the highest ripple density (in ripples per octave) for which a listener could discriminate a 90° shift in phase of the sinusoidally-modulated amplitude spectrum. A 2 × 3 between-subjects design was used to assess the effects of age (7-month-old infants versus adults) and ripple peak/trough "depth" (10, 13, and 20 dB) on SRD in normal-hearing listeners (experiment 1). In experiment 2, SRD thresholds in the same age groups were compared using a task in which ripple starting phases were randomized across trials to obscure within-channel intensity cues. In experiment 3, the randomized starting phase method was used to measure SRD as a function of age (3-month-old infants, 7-month-old infants, and young adults) and ripple depth (10 and 20 dB in repeated measures design). In experiment 1, there was a significant interaction between age and ripple depth. The infant SRDs were significantly poorer than the adult SRDs at 10 and 13 dB ripple depths but adult-like at 20 dB depth. This result is consistent with immature across-channel intensity resolution. In contrast, the trajectory of SRD as a function of depth was steeper for infants than adults suggesting that frequency resolution was better in infants than adults. However, in experiment 2 infant performance was significantly poorer than adults at 20 dB depth suggesting that variability of infants' use of within-channel intensity cues, rather than better frequency resolution, explained the results of experiment 1. In experiment 3, age effects were seen with both groups of infants showing poorer SRD than adults but, unlike experiment 1, no significant interaction between age and depth was seen. Measurement of SRD thresholds in individual 3 to 7-month-old infants is feasible. Performance of normal-hearing infants on SRD may be limited by across-channel intensity resolution despite mature frequency resolution. These findings have significant implications for design and stimulus choice for applying SRD for testing infants with CIs. The high degree of variability in infant SRD can be somewhat reduced by obscuring within-channel cues.

High resolution depth reconstruction from monocular images and sparse point clouds using deep convolutional neural network

NASA Astrophysics Data System (ADS)

Dimitrievski, Martin; Goossens, Bart; Veelaert, Peter; Philips, Wilfried

2017-09-01

Understanding the 3D structure of the environment is advantageous for many tasks in the field of robotics and autonomous vehicles. From the robot's point of view, 3D perception is often formulated as a depth image reconstruction problem. In the literature, dense depth images are often recovered deterministically from stereo image disparities. Other systems use an expensive LiDAR sensor to produce accurate, but semi-sparse depth images. With the advent of deep learning there have also been attempts to estimate depth by only using monocular images. In this paper we combine the best of the two worlds, focusing on a combination of monocular images and low cost LiDAR point clouds. We explore the idea that very sparse depth information accurately captures the global scene structure while variations in image patches can be used to reconstruct local depth to a high resolution. The main contribution of this paper is a supervised learning depth reconstruction system based on a deep convolutional neural network. The network is trained on RGB image patches reinforced with sparse depth information and the output is a depth estimate for each pixel. Using image and point cloud data from the KITTI vision dataset we are able to learn a correspondence between local RGB information and local depth, while at the same time preserving the global scene structure. Our results are evaluated on sequences from the KITTI dataset and our own recordings using a low cost camera and LiDAR setup.

Depth of focus extended microscope configuration for imaging of incorporated groups of molecules, DNA constructs and clusters inside bacterial cells

NASA Astrophysics Data System (ADS)

Fessl, Tomas; Ben-Yaish, Shai; Vacha, Frantisek; Adamec, Frantisek; Zalevsky, Zeev

2009-07-01

Imaging of small objects such as single molecules, DNA clusters and single bacterial cells is problematic not only due to the lateral resolution that is obtainable in currently existing microscopy but also, and as much fundamentally limiting, due to the lack of sufficient axial depth of focus to have the full object focused simultaneously. Extension in depth of focus is helpful also for single molecule steady state FRET measurements. In this technique it is crucial to obtain data from many well focused molecules, which are often located in different axial depths. In this paper we present the implementation of an all-optical and a real time technique of extension in the depth of focus that may be incorporated in any high NA microscope system and to be used for the above mentioned applications. We demonstrate experimentally how after the integration of special optical element in high NA 100× objective lens of a single molecule imaging microscope system, the depth of focus is significantly improved while maintaining the same lateral resolution in imaging applications of incorporated groups of molecules, DNA constructs and clusters inside bacterial cells.

High-resolution corneal topography and tomography of fish eye using wide-field white light interference microscopy

NASA Astrophysics Data System (ADS)

Srivastava, Vishal; Nandy, Sreyankar; Singh Mehta, Dalip

2013-04-01

Topography and tomography of fish cornea is reconstructed using high resolution white light interference microscopy. White light interferograms at different depths were recorded by moving the object axially. For each depth position, five phase shifted interferograms were recorded and analyzed. From the reconstructed phase maps, the corneal topography and hence the refractive index was determined and from amplitude images the cross-sectional image of fish cornea was reconstructed. In the present method, we utilize a nearly common-path interference microscope and wide field illumination and hence do not require any mechanical B-scan. Therefore, the phase stability of the recorded data is improved.

Synthetic aperture ultrasound imaging with a ring transducer array: preliminary ex vivo results.

PubMed

Qu, Xiaolei; Azuma, Takashi; Yogi, Takeshi; Azuma, Shiho; Takeuchi, Hideki; Tamano, Satoshi; Takagi, Shu

2016-10-01

The conventional medical ultrasound imaging has a low lateral spatial resolution, and the image quality depends on the depth of the imaging location. To overcome these problems, this study presents a synthetic aperture (SA) ultrasound imaging method using a ring transducer array. An experimental ring transducer array imaging system was constructed. The array was composed of 2048 transducer elements, and had a diameter of 200 mm and an inter-element pitch of 0.325 mm. The imaging object was placed in the center of the ring transducer array, which was immersed in water. SA ultrasound imaging was then employed to scan the object and reconstruct the reflection image. Both wire phantom and ex vivo experiments were conducted. The proposed method was found to be capable of producing isotropic high-resolution images of the wire phantom. In addition, preliminary ex vivo experiments using porcine organs demonstrated the ability of the method to reconstruct high-quality images without any depth dependence. The proposed ring transducer array and SA ultrasound imaging method were shown to be capable of producing isotropic high-resolution images whose quality was independent of depth.

Computational adaptive optics for broadband optical interferometric tomography of biological tissue

NASA Astrophysics Data System (ADS)

Boppart, Stephen A.

2015-03-01

High-resolution real-time tomography of biological tissues is important for many areas of biological investigations and medical applications. Cellular level optical tomography, however, has been challenging because of the compromise between transverse imaging resolution and depth-of-field, the system and sample aberrations that may be present, and the low imaging sensitivity deep in scattering tissues. The use of computed optical imaging techniques has the potential to address several of these long-standing limitations and challenges. Two related techniques are interferometric synthetic aperture microscopy (ISAM) and computational adaptive optics (CAO). Through three-dimensional Fourierdomain resampling, in combination with high-speed OCT, ISAM can be used to achieve high-resolution in vivo tomography with enhanced depth sensitivity over a depth-of-field extended by more than an order-of-magnitude, in realtime. Subsequently, aberration correction with CAO can be performed in a tomogram, rather than to the optical beam of a broadband optical interferometry system. Based on principles of Fourier optics, aberration correction with CAO is performed on a virtual pupil using Zernike polynomials, offering the potential to augment or even replace the more complicated and expensive adaptive optics hardware with algorithms implemented on a standard desktop computer. Interferometric tomographic reconstructions are characterized with tissue phantoms containing sub-resolution scattering particles, and in both ex vivo and in vivo biological tissue. This review will collectively establish the foundation for high-speed volumetric cellular-level optical interferometric tomography in living tissues.

All-fiber probe for optical coherence tomography with an extended depth of focus by a high-efficient fiber-based filter

NASA Astrophysics Data System (ADS)

Qiu, Jianrong; Shen, Yi; Shangguan, Ziwei; Bao, Wen; Yang, Shanshan; Li, Peng; Ding, Zhihua

2018-04-01

Although methods have been proposed to maintain high transverse resolution over an increased depth range, it is not straightforward to scale down the bulk-optic solutions to minimized probes of optical coherence tomography (OCT). In this paper, we propose a high-efficient fiber-based filter in an all-fiber OCT probe to realize an extended depth of focus (DOF) while maintaining a high transverse resolution. Mode interference in the probe is exploited to modulate the complex field with controllable radial distribution. The principle of DOF extension by the fiber-based filter is theoretically analyzed. Numerical simulations are conducted to evaluate the performances of the designed probes. A DOF extension ratio of 2.6 over conventional Gaussian beam is obtainable in one proposed probe under a focused beam diameter of 4 . 6 μm. Coupling efficiencies of internal interfaces of the proposed probe are below -40 dB except the last probe-air interface, which can also be depressed to be -44 dB after minor modification in lengths for the filter. Length tolerance of the proposed probe is determined to be - 28 / + 20 μm, which is readily satisfied in fabrication. With the merits of extended-DOF, high-resolution, high-efficiency and easy-fabrication, the proposed probe is promising in endoscopic applications.

Modulated Excitation Imaging System for Intravascular Ultrasound.

PubMed

Qiu, Weibao; Wang, Xingying; Chen, Yan; Fu, Qiang; Su, Min; Zhang, Lining; Xia, Jingjing; Dai, Jiyan; Zhang, Yaonan; Zheng, Hairong

2017-08-01

Advances in methodologies and tools often lead to new insights into cardiovascular diseases. Intravascular ultrasound (IVUS) is a well-established diagnostic method that provides high-resolution images of the vessel wall and atherosclerotic plaques. High-frequency (>50 MHz) ultrasound enables the spatial resolution of IVUS to approach that of optical imaging methods. However, the penetration depth decreases when using higher imaging frequencies due to the greater acoustic attenuation. An imaging method that improves the penetration depth of high-resolution IVUS would, therefore, be of major clinical importance. Modulated excitation imaging is known to allow ultrasound waves to penetrate further. This paper presents an ultrasound system specifically for modulated-excitation-based IVUS imaging. The system incorporates a high-voltage waveform generator and an image processing board that are optimized for IVUS applications. In addition, a miniaturized ultrasound transducer has been constructed using a Pb(Mg 1/3 Nb 2/3 )O 3 -PbTiO 3 single crystal to improve the ultrasound characteristics. The results show that the proposed system was able to provide increases of 86.7% in penetration depth and 9.6 dB in the signal-to-noise ratio for 60 MHz IVUS. In vitro tissue samples were also investigated to demonstrate the performance of the system.

Feasibility of high-resolution one-dimensional relaxation imaging at low magnetic field using a single-sided NMR scanner applied to articular cartilage

NASA Astrophysics Data System (ADS)

Rössler, Erik; Mattea, Carlos; Stapf, Siegfried

2015-02-01

Low field Nuclear Magnetic Resonance increases the contrast of the longitudinal relaxation rate in many biological tissues; one prominent example is hyaline articular cartilage. In order to take advantage of this increased contrast and to profile the depth-dependent variations, high resolution parameter measurements are carried out which can be of critical importance in an early diagnosis of cartilage diseases such as osteoarthritis. However, the maximum achievable spatial resolution of parameter profiles is limited by factors such as sensor geometry, sample curvature, and diffusion limitation. In this work, we report on high-resolution single-sided NMR scanner measurements with a commercial device, and quantify these limitations. The highest achievable spatial resolution on the used profiler, and the lateral dimension of the sensitive volume were determined. Since articular cartilage samples are usually bent, we also focus on averaging effects inside the horizontally aligned sensitive volume and their impact on the relaxation profiles. Taking these critical parameters into consideration, depth-dependent relaxation time profiles with the maximum achievable vertical resolution of 20 μm are discussed, and are correlated with diffusion coefficient profiles in hyaline articular cartilage in order to reconstruct T2 maps from the diffusion-weighted CPMG decays of apparent relaxation rates.

Depth Resolution Dependence on Sample Thickness and Incident Energy in On-Axis Transmission Kikuchi Diffraction in Scanning Electron Microscope (SEM).

PubMed

Brodu, Etienne; Bouzy, Emmanuel

2017-12-01

Transmission Kikuchi diffraction is an emerging technique aimed at producing orientation maps of the structure of materials with a nanometric lateral resolution. This study investigates experimentally the depth resolution of the on-axis configuration, via a twinned silicon bi-crystal sample specifically designed and fabricated. The measured depth resolution varies from 30 to 65 nm in the range 10-30 keV, with a close to linear dependence with incident energy and no dependence with the total sample thickness. The depth resolution is explained in terms of two mechanisms acting concomitantly: generation of Kikuchi diffraction all along the thickness of the sample, associated with continuous absorption on the way out. A model based on the electron mean free path is used to account for the dependence with incident energy of the depth resolution. In addition, based on the results in silicon, the use of the mean absorption coefficient is proposed to predict the depth resolution for any atomic number and incident energy.

Functional photoacoustic microscopy of pH

NASA Astrophysics Data System (ADS)

Chatni, M. Rameez; Yao, Junjie; Danielli, Amos; Favazza, Christopher P.; Maslov, Konstantin I.; Wang, Lihong V.

2012-02-01

pH is a tightly regulated indicator of metabolic activity. In mammalian systems, imbalance of pH regulation may result from or result in serious illness. Even though the regulation system of pH is very robust, tissue pH can be altered in many diseases such as cancer, osteoporosis and diabetes mellitus. Traditional high-resolution optical imaging techniques, such as confocal microscopy, routinely image pH in cells and tissues using pH sensitive fluorescent dyes, which change their fluorescence properties with the surrounding pH. Since strong optical scattering in biological tissue blurs images at greater depths, high-resolution pH imaging is limited to penetration depths of 1mm. Here, we report photoacoustic microscopy (PAM) of commercially available pH-sensitive fluorescent dye in tissue phantoms. Using both opticalresolution photoacoustic microscopy (OR-PAM), and acoustic resolution photoacoustic microscopy (AR-PAM), we explored the possibility of recovering the pH values in tissue phantoms. In this paper, we demonstrate that PAM was capable of recovering pH values up to a depth of 2 mm, greater than possible with other forms of optical microscopy.

Computational-optical microscopy for 3D biological imaging beyond the diffraction limit

NASA Astrophysics Data System (ADS)

Grover, Ginni

In recent years, super-resolution imaging has become an important fluorescent microscopy tool. It has enabled imaging of structures smaller than the optical diffraction limit with resolution less than 50 nm. Extension to high-resolution volume imaging has been achieved by integration with various optical techniques. In this thesis, development of a fluorescent microscope to enable high resolution, extended depth, three dimensional (3D) imaging is discussed; which is achieved by integration of computational methods with optical systems. In the first part of the thesis, point spread function (PSF) engineering for volume imaging is discussed. A class of PSFs, referred to as double-helix (DH) PSFs, is generated. The PSFs exhibit two focused spots in the image plane which rotate about the optical axis, encoding depth in rotation of the image. These PSFs extend the depth-of-field up to a factor of ˜5. Precision performance of the DH-PSFs, based on an information theoretical analysis, is compared with other 3D methods with conclusion that the DH-PSFs provide the best precision and the longest depth-of-field. Out of various possible DH-PSFs, a suitable PSF is obtained for super-resolution microscopy. The DH-PSFs are implemented in imaging systems, such as a microscope, with a special phase modulation at the pupil plane. Surface-relief elements which are polarization-insensitive and ˜90% light efficient are developed for phase modulation. The photon-efficient DH-PSF microscopes thus developed are used, along with optimal position estimation algorithms, for tracking and super-resolution imaging in 3D. Imaging at depths-of-field of up to 2.5 microm is achieved without focus scanning. Microtubules were imaged with 3D resolution of (6, 9, 39) nm, which is in close agreement with the theoretical limit. A quantitative study of co-localization of two proteins in volume was conducted in live bacteria. In the last part of the thesis practical aspects of the DH-PSF microscope are discussed. A method to stabilize it, for extended periods of time, with 3-4 nm precision in 3D is developed. 3D Super-resolution is demonstrated without drift. A PSF correction algorithm is demonstrated to improve characteristics of the DH-PSF in an experiment, where it is implemented with a polarization-insensitive liquid crystal spatial light modulator.

CINCH (confocal incoherent correlation holography) super resolution fluorescence microscopy based upon FINCH (Fresnel incoherent correlation holography)

PubMed Central

Siegel, Nisan; Storrie, Brian; Bruce, Marc

2016-01-01

FINCH holographic fluorescence microscopy creates high resolution super-resolved images with enhanced depth of focus. The simple addition of a real-time Nipkow disk confocal image scanner in a conjugate plane of this incoherent holographic system is shown to reduce the depth of focus, and the combination of both techniques provides a simple way to enhance the axial resolution of FINCH in a combined method called “CINCH”. An important feature of the combined system allows for the simultaneous real-time image capture of widefield and holographic images or confocal and confocal holographic images for ready comparison of each method on the exact same field of view. Additional GPU based complex deconvolution processing of the images further enhances resolution. PMID:26839443

Mapping snow depth in open alpine terrain from stereo satellite imagery

NASA Astrophysics Data System (ADS)

Marti, R.; Gascoin, S.; Berthier, E.; de Pinel, M.; Houet, T.; Laffly, D.

2016-07-01

To date, there is no definitive approach to map snow depth in mountainous areas from spaceborne sensors. Here, we examine the potential of very-high-resolution (VHR) optical stereo satellites to this purpose. Two triplets of 0.70 m resolution images were acquired by the Pléiades satellite over an open alpine catchment (14.5 km2) under snow-free and snow-covered conditions. The open-source software Ame's Stereo Pipeline (ASP) was used to match the stereo pairs without ground control points to generate raw photogrammetric clouds and to convert them into high-resolution digital elevation models (DEMs) at 1, 2, and 4 m resolutions. The DEM differences (dDEMs) were computed after 3-D coregistration, including a correction of a -0.48 m vertical bias. The bias-corrected dDEM maps were compared to 451 snow-probe measurements. The results show a decimetric accuracy and precision in the Pléiades-derived snow depths. The median of the residuals is -0.16 m, with a standard deviation (SD) of 0.58 m at a pixel size of 2 m. We compared the 2 m Pléiades dDEM to a 2 m dDEM that was based on a winged unmanned aircraft vehicle (UAV) photogrammetric survey that was performed on the same winter date over a portion of the catchment (3.1 km2). The UAV-derived snow depth map exhibits the same patterns as the Pléiades-derived snow map, with a median of -0.11 m and a SD of 0.62 m when compared to the snow-probe measurements. The Pléiades images benefit from a very broad radiometric range (12 bits), allowing a high correlation success rate over the snow-covered areas. This study demonstrates the value of VHR stereo satellite imagery to map snow depth in remote mountainous areas even when no field data are available.

Multibeam interferometric illumination as the primary source of resolution in optical microscopy

NASA Astrophysics Data System (ADS)

Ryu, J.; Hong, S. S.; Horn, B. K. P.; Freeman, D. M.; Mermelstein, M. S.

2006-04-01

High-resolution images of a fluorescent target were obtained using a low-resolution optical detector by illuminating the target with interference patterns produced with 31 coherent beams. The beams were arranged in a cone with 78° half angle to produce illumination patterns consistent with a numerical aperture of 0.98. High-resolution images were constructed from low-resolution images taken with 930 different illumination patterns. Results for optical detectors with numerical apertures of 0.1 and 0.2 were similar, demonstrating that the resolution is primarily determined by the illuminator and not by the low-resolution detector. Furthermore, the long working distance, large depth of field, and large field of view of the low-resolution detector are preserved.

Optimal design and critical analysis of a high resolution video plenoptic demonstrator

NASA Astrophysics Data System (ADS)

Drazic, Valter; Sacré, Jean-Jacques; Bertrand, Jérôme; Schubert, Arno; Blondé, Etienne

2011-03-01

A plenoptic camera is a natural multi-view acquisition device also capable of measuring distances by correlating a set of images acquired under different parallaxes. Its single lens and single sensor architecture have two downsides: limited resolution and depth sensitivity. In a very first step and in order to circumvent those shortcomings, we have investigated how the basic design parameters of a plenoptic camera optimize both the resolution of each view and also its depth measuring capability. In a second step, we built a prototype based on a very high resolution Red One® movie camera with an external plenoptic adapter and a relay lens. The prototype delivered 5 video views of 820x410. The main limitation in our prototype is view cross talk due to optical aberrations which reduce the depth accuracy performance. We have simulated some limiting optical aberrations and predicted its impact on the performances of the camera. In addition, we developed adjustment protocols based on a simple pattern and analyzing programs which investigate the view mapping and amount of parallax crosstalk on the sensor on a pixel basis. The results of these developments enabled us to adjust the lenslet array with a sub micrometer precision and to mark the pixels of the sensor where the views do not register properly.

Optimal design and critical analysis of a high-resolution video plenoptic demonstrator

NASA Astrophysics Data System (ADS)

Drazic, Valter; Sacré, Jean-Jacques; Schubert, Arno; Bertrand, Jérôme; Blondé, Etienne

2012-01-01

A plenoptic camera is a natural multiview acquisition device also capable of measuring distances by correlating a set of images acquired under different parallaxes. Its single lens and single sensor architecture have two downsides: limited resolution and limited depth sensitivity. As a first step and in order to circumvent those shortcomings, we investigated how the basic design parameters of a plenoptic camera optimize both the resolution of each view and its depth-measuring capability. In a second step, we built a prototype based on a very high resolution Red One® movie camera with an external plenoptic adapter and a relay lens. The prototype delivered five video views of 820 × 410. The main limitation in our prototype is view crosstalk due to optical aberrations that reduce the depth accuracy performance. We simulated some limiting optical aberrations and predicted their impact on the performance of the camera. In addition, we developed adjustment protocols based on a simple pattern and analysis of programs that investigated the view mapping and amount of parallax crosstalk on the sensor on a pixel basis. The results of these developments enabled us to adjust the lenslet array with a submicrometer precision and to mark the pixels of the sensor where the views do not register properly.

Enhanced truncated-correlation photothermal coherence tomography with application to deep subsurface defect imaging and 3-dimensional reconstructions

NASA Astrophysics Data System (ADS)

Tavakolian, Pantea; Sivagurunathan, Koneswaran; Mandelis, Andreas

2017-07-01

Photothermal diffusion-wave imaging is a promising technique for non-destructive evaluation and medical applications. Several diffusion-wave techniques have been developed to produce depth-resolved planar images of solids and to overcome imaging depth and image blurring limitations imposed by the physics of parabolic diffusion waves. Truncated-Correlation Photothermal Coherence Tomography (TC-PCT) is the most successful class of these methodologies to-date providing 3-D subsurface visualization with maximum depth penetration and high axial and lateral resolution. To extend the depth range and axial and lateral resolution, an in-depth analysis of TC-PCT, a novel imaging system with improved instrumentation, and an optimized reconstruction algorithm over the original TC-PCT technique is developed. Thermal waves produced by a laser chirped pulsed heat source in a finite thickness solid and the image reconstruction algorithm are investigated from the theoretical point of view. 3-D visualization of subsurface defects utilizing the new TC-PCT system is reported. The results demonstrate that this method is able to detect subsurface defects at the depth range of ˜4 mm in a steel sample, which exhibits dynamic range improvement by a factor of 2.6 compared to the original TC-PCT. This depth does not represent the upper limit of the enhanced TC-PCT. Lateral resolution in the steel sample was measured to be ˜31 μm.

Use of Aerial high resolution visible imagery to produce large river bathymetry: a multi temporal and spatial study over the by-passed Upper Rhine

NASA Astrophysics Data System (ADS)

Béal, D.; Piégay, H.; Arnaud, F.; Rollet, A.; Schmitt, L.

2011-12-01

Aerial high resolution visible imagery allows producing large river bathymetry assuming that water depth is related to water colour (Beer-Bouguer-Lambert law). In this paper we aim at monitoring Rhine River geometry changes for a diachronic study as well as sediment transport after an artificial injection (25.000 m3 restoration operation). For that a consequent data base of ground measurements of river depth is used, built on 3 different sources: (i) differential GPS acquisitions, (ii) sounder data and (iii) lateral profiles realized by experts. Water depth is estimated using a multi linear regression over neo channels built on a principal component analysis over red, green and blue bands and previously cited depth data. The study site is a 12 km long reach of the by-passed section of the Rhine River that draws French and German border. This section has been heavily impacted by engineering works during the last two centuries: channelization since 1842 for navigation purposes and the construction of a 45 km long lateral canal and 4 consecutive hydroelectric power plants of since 1932. Several bathymetric models are produced based on 3 different spatial resolutions (6, 13 and 20 cm) and 5 acquisitions (January, March, April, August and October) since 2008. Objectives are to find the optimal spatial resolution and to characterize seasonal effects. Best performances according to the 13 cm resolution show a 18 cm accuracy when suspended matters impacted less water transparency. Discussions are oriented to the monitoring of the artificial reload after 2 flood events during winter 2010-2011. Bathymetric models produced are also useful to build 2D hydraulic model's mesh.

SU-E-T-296: Dosimetric Analysis of Small Animal Image-Guided Irradiator Using High Resolution Optical CT Imaging of 3D Dosimeters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Na, Y; Qian, X; Wuu, C

Purpose: To verify the dosimetric characteristics of a small animal image-guided irradiator using a high-resolution of optical CT imaging of 3D dosimeters. Methods: PRESAEGE 3D dosimeters were used to determine dosimetric characteristics of a small animal image-guided irradiator and compared with EBT2 films. Cylindrical PRESAGE dosimeters with 7cm height and 6cm diameter were placed along the central axis of the beam. The films were positioned between 6×6cm{sup 2} cubed plastic water phantoms perpendicular to the beam direction with multiple depths. PRESAGE dosimeters and EBT2 films were then irradiated with the irradiator beams at 220kVp and 13mA. Each of irradiated PRESAGEmore » dosimeters named PA1, PA2, PB1, and PB2, was independently scanned using a high-resolution single laser beam optical CT scanner. The transverse images were reconstructed with a 0.1mm high-resolution pixel. A commercial Epson Expression 10000XL flatbed scanner was used for readout of irradiated EBT2 films at a 0.4mm pixel resolution. PDD curves and beam profiles were measured for the irradiated PRESAGE dosimeters and EBT2 films. Results: The PDD agreements between the irradiated PRESAGE dosimeter PA1, PA2, PB1, PB2 and the EB2 films were 1.7, 2.3, 1.9, and 1.9% for the multiple depths at 1, 5, 10, 15, 20, 30, 40 and 50mm, respectively. The FWHM measurements for each PRESAEGE dosimeter and film agreed with 0.5, 1.1, 0.4, and 1.7%, respectively, at 30mm depth. Both PDD and FWHM measurements for the PRESAGE dosimeters and the films agreed overall within 2%. The 20%–80% penumbral widths of each PRESAGE dosimeter and the film at a given depth were respectively found to be 0.97, 0.91, 0.79, 0.88, and 0.37mm. Conclusion: Dosimetric characteristics of a small animal image-guided irradiator have been demonstrated with the measurements of PRESAGE dosimeter and EB2 film. With the high resolution and accuracy obtained from this 3D dosimetry system, precise targeting small animal irradiation can be achieved.« less

A coaxially focused multi-mode beam for optical coherence tomography imaging with extended depth of focus (Conference Presentation)

NASA Astrophysics Data System (ADS)

Yin, Biwei; Liang, Chia-Pin; Vuong, Barry; Tearney, Guillermo J.

2017-02-01

Conventional OCT images, obtained using a focused Gaussian beam have a lateral resolution of approximately 30 μm and a depth of focus (DOF) of 2-3 mm, defined as the confocal parameter (twice of Gaussian beam Rayleigh range). Improvement of lateral resolution without sacrificing imaging range requires techniques that can extend the DOF. Previously, we described a self-imaging wavefront division optical system that provided an estimated one order of magnitude DOF extension. In this study, we further investigate the properties of the coaxially focused multi-mode (CAFM) beam created by this self-imaging wavefront division optical system and demonstrate its feasibility for real-time biological tissue imaging. Gaussian beam and CAFM beam fiber optic probes with similar numerical apertures (objective NA≈0.5) were fabricated, providing lateral resolutions of approximately 2 μm. Rigorous lateral resolution characterization over depth was performed for both probes. The CAFM beam probe was found to be able to provide a DOF that was approximately one order of magnitude greater than that of Gaussian beam probe. By incorporating the CAFM beam fiber optic probe into a μOCT system with 1.5 μm axial resolution, we were able to acquire cross-sectional images of swine small intestine ex vivo, enabling the visualization of subcellular structures, providing high quality OCT images over more than a 300 μm depth range.

Soft x-ray holographic tomography for biological specimens

NASA Astrophysics Data System (ADS)

Gao, Hongyi; Chen, Jianwen; Xie, Honglan; Li, Ruxin; Xu, Zhizhan; Jiang, Shiping; Zhang, Yuxuan

2003-10-01

In this paper, we present some experimental results on X -ray holography, holographic tomography, and a new holographic tomography method called pre-amplified holographic tomography is proposed. Due to the shorter wavelength and the larger penetration depths, X-rays provide the potential of higher resolution in imaging techniques, and have the ability to image intact, living, hydrated cells w ithout slicing, dehydration, chemical fixation or stain. Recently, using X-ray source in National Synchrotron Radiation Laboratory in Hefei, we have successfully performed some soft X-ray holography experiments on biological specimen. The specimens used in the experiments was the garlic clove epidermis, we got their X-ray hologram, and then reconstructed them by computer programs, the feature of the cell walls, the nuclei and some cytoplasm were clearly resolved. However, there still exist some problems in realization of practical 3D microscopic imaging due to the near-unity refractive index of the matter. There is no X-ray optics having a sufficient high numerical aperture to achieve a depth resolution that is comparable to the transverse resolution. On the other hand, computer tomography needs a record of hundreds of views of the test object at different angles for high resolution. This is because the number of views required for a densely packed object is equal to the object radius divided by the desired depth resolution. Clearly, it is impractical for a radiation-sensitive biological specimen. Moreover, the X-ray diffraction effect makes projection data blur, this badly degrades the resolution of the reconstructed image. In order to observe 3D structure of the biological specimens, McNulty proposed a new method for 3D imaging called "holographic tomography (HT)" in which several holograms of the specimen are recorded from various illumination directions and combined in the reconstruction step. This permits the specimens to be sampled over a wide range of spatial frequencies to improve the depth resolution. In NSRL, we performed soft X-ray holographic tomography experiments. The specimen was the spider filaments and PM M A as recording medium. By 3D CT reconstruction of the projection data, three dimensional density distribution of the specimen was obtained. Also, we developed a new X-ray holographic tomography m ethod called pre-amplified holographic tomography. The method permits a digital real-time 3D reconstruction with high-resolution and a simple and compact experimental setup as well.

Resolution of anisotropic and shielded highly conductive layers using 2-D electromagnetic modelling in the Rhine Graben and Black Forest

NASA Astrophysics Data System (ADS)

Tezkan, Bülent; Červ, Václav; Pek, Josef

1992-12-01

Anisotropy in magnetotelluric (MT) data has been found very often and has been explained as the result of local structures of different conductivities. In this paper, an observed anisotropy in MT data is not interpreted qualitatively in terms of local structures but is modelled quantitatively by a quasi-anisotropic layer. Besides the MT transfer functions, measurements of the vertical magnetic component are required. The second goal of this paper is to describe a method which permits the resolution of mid-crustal conductive layers in the presence of an additional high-conductivity layer at the surface. This method is possible in a two-dimensional (2-D) situation that limits the spatial extension of the surface structure. Again, vertical magnetic field recordings are necessary, but the phase of the E-polarization with respect to the 2-D structure is the most sensitive parameter. Using two field sites in Southern Germany, it has been possible to give a quantitative explanation of anisotropy and an improved depth resolution, and to derive an integrated conductivity of the highly conductive mid-crustal layers using MT and geomagnetic depth sounding data. The anisotropic highly conductive layer is located 12 km beneath the poorly conductive Black Forest crystalline rocks, whereas it is at a depth of 6 km beneath the highly conductive Rhine Graben sediments.

Limit on possible narrow rings around Jupiter

NASA Technical Reports Server (NTRS)

Dunham, E.; Elliot, J. L.; Mink, D.; Klemola, A. R.

1982-01-01

An upper limit to the optical depth of the Jovian ring at high spatial resolution, determined from stellar occultation data, is reported. The spatial resolution of the observation is limited to about 13 km in Jupiter's equatorial plane by the projection of the Fresnel zone on the equatorial plane in the radial direction. At this resolution, the normal optical depth limit is about 0.008. This limit applies to a strip in the Jovian equatorial plane that crosses the orbits of Amalthea, 1979J1, 1979J3, and the ring. An upper limit on the number density of kilometer-size boulders has been set at one per 11.000 sq km in the equatorial plane.

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing.

PubMed

Oono, Ryoko

2017-01-01

High-throughput sequencing technology has helped microbial community ecologists explore ecological and evolutionary patterns at unprecedented scales. The benefits of a large sample size still typically outweigh that of greater sequencing depths per sample for accurate estimations of ecological inferences. However, excluding or not sequencing rare taxa may mislead the answers to the questions 'how and why are communities different?' This study evaluates the confidence intervals of ecological inferences from high-throughput sequencing data of foliar fungal endophytes as case studies through a range of sampling efforts, sequencing depths, and taxonomic resolutions to understand how technical and analytical practices may affect our interpretations. Increasing sampling size reliably decreased confidence intervals across multiple community comparisons. However, the effects of sequencing depths on confidence intervals depended on how rare taxa influenced the dissimilarity estimates among communities and did not significantly decrease confidence intervals for all community comparisons. A comparison of simulated communities under random drift suggests that sequencing depths are important in estimating dissimilarities between microbial communities under neutral selective processes. Confidence interval analyses reveal important biases as well as biological trends in microbial community studies that otherwise may be ignored when communities are only compared for statistically significant differences.

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing

PubMed Central

2017-01-01

High-throughput sequencing technology has helped microbial community ecologists explore ecological and evolutionary patterns at unprecedented scales. The benefits of a large sample size still typically outweigh that of greater sequencing depths per sample for accurate estimations of ecological inferences. However, excluding or not sequencing rare taxa may mislead the answers to the questions ‘how and why are communities different?’ This study evaluates the confidence intervals of ecological inferences from high-throughput sequencing data of foliar fungal endophytes as case studies through a range of sampling efforts, sequencing depths, and taxonomic resolutions to understand how technical and analytical practices may affect our interpretations. Increasing sampling size reliably decreased confidence intervals across multiple community comparisons. However, the effects of sequencing depths on confidence intervals depended on how rare taxa influenced the dissimilarity estimates among communities and did not significantly decrease confidence intervals for all community comparisons. A comparison of simulated communities under random drift suggests that sequencing depths are important in estimating dissimilarities between microbial communities under neutral selective processes. Confidence interval analyses reveal important biases as well as biological trends in microbial community studies that otherwise may be ignored when communities are only compared for statistically significant differences. PMID:29253889

Mapping snow depth from stereo satellite imagery

NASA Astrophysics Data System (ADS)

Gascoin, S.; Marti, R.; Berthier, E.; Houet, T.; de Pinel, M.; Laffly, D.

2016-12-01

To date, there is no definitive approach to map snow depth in mountainous areas from spaceborne sensors. Here, we examine the potential of very-high-resolution (VHR) optical stereo satellites to this purpose. Two triplets of 0.70 m resolution images were acquired by the Pléiades satellite over an open alpine catchment (14.5 km²) under snow-free and snow-covered conditions. The open-source software Ame's Stereo Pipeline (ASP) was used to match the stereo pairs without ground control points to generate raw photogrammetric clouds and to convert them into high-resolution digital elevation models (DEMs) at 1, 2, and 4 m resolutions. The DEM differences (dDEMs) were computed after 3-D coregistration, including a correction of a -0.48 m vertical bias. The bias-corrected dDEM maps were compared to 451 snow-probe measurements. The results show a decimetric accuracy and precision in the Pléiades-derived snow depths. The median of the residuals is -0.16 m, with a standard deviation (SD) of 0.58 m at a pixel size of 2 m. We compared the 2 m Pléiades dDEM to a 2 m dDEM that was based on a winged unmanned aircraft vehicle (UAV) photogrammetric survey that was performed on the same winter date over a portion of the catchment (3.1 km²). The UAV-derived snow depth map exhibits the same patterns as the Pléiades-derived snow map, with a median of -0.11 m and a SD of 0.62 m when compared to the snow-probe measurements. The Pléiades images benefit from a very broad radiometric range (12 bits), allowing a high correlation success rate over the snow-covered areas. This study demonstrates the value of VHR stereo satellite imagery to map snow depth in remote mountainous areas even when no field data are available. Based on this method we have initiated a multi-year survey of the peak snow depth in the Bassiès catchment.

Deep and high-resolution three-dimensional tracking of single particles using nonlinear and multiplexed illumination

NASA Astrophysics Data System (ADS)

Perillo, Evan P.; Liu, Yen-Liang; Huynh, Khang; Liu, Cong; Chou, Chao-Kai; Hung, Mien-Chie; Yeh, Hsin-Chih; Dunn, Andrew K.

2015-07-01

Molecular trafficking within cells, tissues and engineered three-dimensional multicellular models is critical to the understanding of the development and treatment of various diseases including cancer. However, current tracking methods are either confined to two dimensions or limited to an interrogation depth of ~15 μm. Here we present a three-dimensional tracking method capable of quantifying rapid molecular transport dynamics in highly scattering environments at depths up to 200 μm. The system has a response time of 1 ms with a temporal resolution down to 50 μs in high signal-to-noise conditions, and a spatial localization precision as good as 35 nm. Built on spatiotemporally multiplexed two-photon excitation, this approach requires only one detector for three-dimensional particle tracking and allows for two-photon, multicolour imaging. Here we demonstrate three-dimensional tracking of epidermal growth factor receptor complexes at a depth of ~100 μm in tumour spheroids.

An Examination of Parameters Affecting Large Eddy Simulations of Flow Past a Square Cylinder

NASA Technical Reports Server (NTRS)

Mankbadi, M. R.; Georgiadis, N. J.

2014-01-01

Separated flow over a bluff body is analyzed via large eddy simulations. The turbulent flow around a square cylinder features a variety of complex flow phenomena such as highly unsteady vortical structures, reverse flow in the near wall region, and wake turbulence. The formation of spanwise vortices is often times artificially suppressed in computations by either insufficient depth or a coarse spanwise resolution. As the resolution is refined and the domain extended, the artificial turbulent energy exchange between spanwise and streamwise turbulence is eliminated within the wake region. A parametric study is performed highlighting the effects of spanwise vortices where the spanwise computational domain's resolution and depth are varied. For Re=22,000, the mean and turbulent statistics computed from the numerical large eddy simulations (NLES) are in good agreement with experimental data. Von-Karman shedding is observed in the wake of the cylinder. Mesh independence is illustrated by comparing a mesh resolution of 2 million to 16 million. Sensitivities to time stepping were minimized and sampling frequency sensitivities were nonpresent. While increasing the spanwise depth and resolution can be costly, this practice was found to be necessary to eliminating the artificial turbulent energy exchange.

Surface structure of imidazolium-based ionic liquids: Quantitative comparison between simulations and high-resolution RBS measurements.

PubMed

Nakajima, Kaoru; Nakanishi, Shunto; Lísal, Martin; Kimura, Kenji

2016-03-21

Elemental depth profiles of 1-alkyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([CnMIM][TFSI], n = 4, 6, 8) are measured using high-resolution Rutherford backscattering spectroscopy (HRBS). The profiles are compared with the results of molecular dynamics (MD) simulations. Both MD simulations and HRBS measurements show that the depth profiles deviate from the uniform stoichiometric composition in the surface region, showing preferential orientations of ions at the surface. The MD simulations qualitatively reproduce the observed HRBS profiles but the agreement is not satisfactory. The observed discrepancy is ascribed to the capillary waves. By taking account of the surface roughness induced by the capillary waves, the agreement becomes almost perfect.

Surface structure of imidazolium-based ionic liquids: Quantitative comparison between simulations and high-resolution RBS measurements

NASA Astrophysics Data System (ADS)

Nakajima, Kaoru; Nakanishi, Shunto; Lísal, Martin; Kimura, Kenji

2016-03-01

Elemental depth profiles of 1-alkyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide ([CnMIM][TFSI], n = 4, 6, 8) are measured using high-resolution Rutherford backscattering spectroscopy (HRBS). The profiles are compared with the results of molecular dynamics (MD) simulations. Both MD simulations and HRBS measurements show that the depth profiles deviate from the uniform stoichiometric composition in the surface region, showing preferential orientations of ions at the surface. The MD simulations qualitatively reproduce the observed HRBS profiles but the agreement is not satisfactory. The observed discrepancy is ascribed to the capillary waves. By taking account of the surface roughness induced by the capillary waves, the agreement becomes almost perfect.

Micromachined array tip for multifocus fiber-based optical coherence tomography.

PubMed

Yang, Victor X D; Munce, Nigel; Pekar, Julius; Gordon, Maggie L; Lo, Stewart; Marcon, Norman E; Wilson, Brian C; Vitkin, I Alex

2004-08-01

High-resolution optical coherence tomography demands a large detector bandwidth and a high numerical aperture for real-time imaging, which is difficult to achieve over a large imaging depth. To resolve these conflicting requirements we propose a novel multifocus fiber-based optical coherence tomography system with a micromachined array tip. We demonstrate the fabrication of a prototype four-channel tip that maintains a 9-14-microm spot diameter with more than 500 microm of imaging depth. Images of a resolution target and a human tooth were obtained with this tip by use of a four-channel cascaded Michelson fiber-optic interferometer, scanned simultaneously at 8 kHz with geometric power distribution across the four channels.

Investigation of the depth and diameter relationship of subkilometer-diameter lunar craters

NASA Astrophysics Data System (ADS)

Sun, Shujuan; Yue, Zongyu; Di, Kaichang

2018-07-01

The depth and diameter relationship is one of the most important characteristics of craters; however, previous studies have focused mostly on large-diameter craters because of the limitations of image resolution. Recently, very high resolution images have been obtained that make it possible to expand this field of study to craters with diameters of < 1 km. Using images with resolution of up to 0.5 m, acquired by the Lunar Reconnaissance Orbiter, we investigated the depth and diameter relationship of fresh craters with subkilometer diameters. We selected craters from lunar maria and highlands, and we made precise measurements of their diameters and depths. The results show that the d/D ratio of small craters in the lunar maria and highlands, which varies from ∼0.2 to ∼0.1, is generally shallower than that of larger craters. We propose that the reason for the difference is because of the low strength of the lunar surface material. The fitted power law parameters of lunar mare and highland craters were found to be different, and that might be explained by terrain-related differences.

Spectral Ripple Discrimination in Normal Hearing Infants

PubMed Central

Horn, David L.; Won, Jong Ho; Rubinstein, Jay T.; Werner, Lynne A.

2016-01-01

Objectives Spectral resolution is a correlate of open-set speech understanding in post-lingually deaf adults as well as pre-lingually deaf children who use cochlear implants (CIs). In order to apply measures of spectral resolution to assess device efficacy in younger CI users, it is necessary to understand how spectral resolution develops in NH children. In this study, spectral ripple discrimination (SRD) was used to measure listeners’ sensitivity to a shift in phase of the spectral envelope of a broadband noise. Both resolution of peak to peak location (frequency resolution) and peak to trough intensity (across-channel intensity resolution) are required for SRD. Design SRD was measured as the highest ripple density (in ripples per octave) for which a listener could discriminate a 90 degree shift in phase of the sinusoidally-modulated amplitude spectrum. A 2X3 between subjects design was used to assess the effects of age (7-month-old infants versus adults) and ripple peak/trough “depth” (10, 13, and 20 dB) on SRD in normal hearing listeners (Experiment 1). In Experiment 2, SRD thresholds in the same age groups were compared using a task in which ripple starting phases were randomized across trials to obscure within-channel intensity cues. In Experiment 3, the randomized starting phase method was used to measure SRD as a function of age (3-month-old infants, 7-month-old infants, and young adults) and ripple depth (10 and 20 dB in repeated measures design). Results In Experiment 1, there was a significant interaction between age and ripple depth. The Infant SRDs were significantly poorer than the adult SRDs at 10 and 13 dB ripple depths but adult-like at 20 dB depth. This result is consistent with immature across-channel intensity resolution. In contrast, the trajectory of SRD as a function of depth was steeper for infants than adults suggesting that frequency resolution was better in infants than adults. However, in Experiment 2 infant performance was significantly poorer than adults at 20 dB depth suggesting that variability of infants’ use of within-channel intensity cues, rather than better frequency resolution, explained the results of Experiment 1. In Experiment 3, age effects were seen with both groups of infants showing poorer SRD than adults but, unlike Experiment 1, no significant interaction between age and depth was seen. Conclusions Measurement of SRD thresholds in individual 3 to 7-month-old infants is feasible. Performance of NH infants on SRD may be limited by across-channel intensity resolution despite mature frequency resolution. These findings have significant implications for design and stimulus choice for applying SRD for testing infants with CIs. The high degree of variability in infant SRD can be somewhat reduced by obscuring within-channel cues. PMID:27768611

Spatial Variability of Soil-Water Storage in the Southern Sierra Critical Zone Observatory: Measurement and Prediction

NASA Astrophysics Data System (ADS)

Oroza, C.; Bales, R. C.; Zheng, Z.; Glaser, S. D.

2017-12-01

Predicting the spatial distribution of soil moisture in mountain environments is confounded by multiple factors, including complex topography, spatial variably of soil texture, sub-surface flow paths, and snow-soil interactions. While remote-sensing tools such as passive-microwave monitoring can measure spatial variability of soil moisture, they only capture near-surface soil layers. Large-scale sensor networks are increasingly providing soil-moisture measurements at high temporal resolution across a broader range of depths than are accessible from remote sensing. It may be possible to combine these in-situ measurements with high-resolution LIDAR topography and canopy cover to estimate the spatial distribution of soil moisture at high spatial resolution at multiple depths. We study the feasibility of this approach using six years (2009-2014) of daily volumetric water content measurements at 10-, 30-, and 60-cm depths from the Southern Sierra Critical Zone Observatory. A non-parametric, multivariate regression algorithm, Random Forest, was used to predict the spatial distribution of depth-integrated soil-water storage, based on the in-situ measurements and a combination of node attributes (topographic wetness, northness, elevation, soil texture, and location with respect to canopy cover). We observe predictable patterns of predictor accuracy and independent variable ranking during the six-year study period. Predictor accuracy is highest during the snow-cover and early recession periods but declines during the dry period. Soil texture has consistently high feature importance. Other landscape attributes exhibit seasonal trends: northness peaks during the wet-up period, and elevation and topographic-wetness index peak during the recession and dry period, respectively.

Estimates of Cutoff Depths of Seismogenic Layer in Kanto Region from the High-Resolution Relocated Earthquake Catalog

NASA Astrophysics Data System (ADS)

Takeda, T.; Yano, T. E.; Shiomi, K.

2013-12-01

The highly-developed active fault evaluation is necessary particularly at the Kanto metropolitan area, where multiple major active fault zones exist. The cutoff depth of active faults is one of important parameters since it is a good indicator to define fault dimensions and hence its maximum expected magnitude. The depth is normally estimated from microseismicity, thermal structure, and depths of Curie point and Conrad discontinuity. For instance, Omuralieva et al. (2012) has estimated the cutoff depths of the whole Japan by creating a 3-D relocated hypocenter catalog. However its spatial resolution could be insufficient for the robustness of the active faults evaluation since precision within 15 km that is comparable to the minimum evaluated fault size is preferred. Therefore the spatial resolution of the earthquake catalog to estimate the cutoff depth is required to be smaller than 15 km. This year we launched the Japan Unified hIgh-resolution relocated Catalog for Earthquakes (JUICE) Project (Yano et al., this fall meeting), of which objective is to create precise and reliable earthquake catalog for all of Japan, using waveform cross-correlation data and Double-Difference relocation method (Waldhauser and Ellsworth, 2000). This catalog has higher precision of hypocenter determination than the routine one. In this study, we estimate high-resolution cutoff depths of seismogenic layer using this catalog of the Kanto region where preliminary JUICE analysis has been already done. D90, the cutoff depths which contain 90% of the occuring earthquake is often used as a reference to understand the seismogenic layer. The reason of choosing 90% is because it relies on uncertainties based on the amount of depth errors of hypocenters.. In this study we estimate D95 because more precise and reliable catalog is now available by the JUICE project. First we generate 10 km equally spaced grid in our study area. Second we pick hypocenters within a radius of 10 km from each grid point and arrange into hypocenter groups. Finally we estimate D95 from the hypocenter groups at each grid point. During the analysis we use three conditions; (1) the depths of the hypocenters we used are less than 25 km; (2) the minimum number of the hypocenter group is 25; and (3) low frequency earthquakes are excluded. Our estimate of D95 shows undulated and fine features, such as having a different profile along the same fault. This can be seen at two major fault zones: (1) Tachikawa fault zone, and (2) the northwest marginal fault zone of the Kanto basin. The D95 gets deeper from northwest to southwest along these fault zones, , suggesting that the constant cutoff depth cannot be used even along the same fault zone. One of patters of our D95 shows deeper in the south Kanto region. The reason for this pattern could be that hypocenters we used in this study may be contaminated by seismicity near the plate boundary between the Philippine Sea plate and the Eurasian plate. Therefore we should carefully interpret D95 in the south Kanto.

High-resolution seismic-reflection images across the ICDP-USGS Eyreville deep drilling site, Chesapeake Bay impact structure

USGS Publications Warehouse

Powars, David S.; Catchings, Rufus D.; Goldman, Mark R.; Gohn, Gregory S.; Horton, J. Wright; Edwards, Lucy E.; Rymer, Michael J.; Gandhok, Gini

2009-01-01

The U.S. Geological Survey (USGS) acquired two 1.4-km-long, high-resolution (~5 m vertical resolution) seismic-reflection lines in 2006 that cross near the International Continental Scientific Drilling Program (ICDP)-USGS Eyreville deep drilling site located above the late Eocene Chesapeake Bay impact structure in Virginia, USA. Five-meter spacing of seismic sources and geophones produced high-resolution images of the subsurface adjacent to the 1766-m-depth Eyreville core holes. Analysis of these lines, in the context of the core hole stratigraphy, shows that moderate-amplitude, discontinuous, dipping reflections below ~527 m correlate with a variety of Chesapeake Bay impact structure sediment and rock breccias recovered in the cores. High-amplitude, continuous, subhorizontal reflections above ~527 m depth correlate with the uppermost part of the Chesapeake Bay impact structure crater-fill sediments and postimpact Eocene to Pleistocene sediments. Reflections with ~20-30 m of relief in the uppermost part of the crater-fill and lowermost part of the postimpact section suggest differential compaction of the crater-fill materials during early postimpact time. The top of the crater-fill section also shows ~20 m of relief that appears to represent an original synimpact surface. Truncation surfaces, locally dipping reflections, and depth variations in reflection amplitudes generally correlate with the lithostrati-graphic and sequence-stratigraphic units and contacts in the core. Seismic images show apparent postimpact paleochannels that include the first possible Miocene paleochannels in the Mid-Atlantic Coastal Plain. Broad downwarping in the postim-pact section unrelated to structures in the crater fill indicates postimpact sediment compaction.

High-resolution scanning Hall probe microscopy

NASA Astrophysics Data System (ADS)

Hallen, Hans D.; Hess, H. F.; Chang, A. M.; Pfeiffer, Loren N.; West, Kenneth W.; Mitzi, David B.

1993-06-01

A high resolution scanning Hall probe microscope is used to spatially resolve vortices in high temperature superconducting Bi2Sr2CaCu2O8+(delta) crystals. We observe a partially ordered vortex lattice at several different applied magnetic fields and temperatures. At higher temperatures, a limited amount of vortex re-arrangement is observed, but most vortices remain fixed for periods long compared to the imaging time of several hours even at temperatures as high as 75 degree(s)K (the superconducting transition temperature for these crystals is approximately 84 degree(s)K). A measure of these local magnetic penetration depth can be obtained from a fit to the surface field of several neighboring vortices, and has been measured as a function of temperature. In particular, we have measured the zero temperature penetration depth and found it to be 275 +/- 40 nm.

Soil Water Measurement Using Actively Heated Fiber Optics at Field Scale.

PubMed

Vidana Gamage, Duminda N; Biswas, Asim; Strachan, Ian B; Adamchuk, Viacheslav I

2018-04-06

Several studies have demonstrated the potential of actively heated fiber optics (AHFO) to measure soil water content (SWC) at high spatial and temporal resolutions. This study tested the feasibility of the AHFO technique to measure soil water in the surface soil of a crop grown field over a growing season using an in-situ calibration approach. Heat pulses of five minutes duration were applied at a rate of 7.28 W m -1 along eighteen fiber optic cable transects installed at three depths (0.05, 0.10 and 0.20 m) at six-hour intervals. Cumulative temperature increase (T cum ) during heat pulses was calculated at locations along the cable. While predicting commercial sensor measurements, the AHFO showed root mean square errors (RMSE) of 2.8, 3.7 and 3.7% for 0.05, 0.10 and 0.20 m depths, respectively. Further, the coefficients of determination (R²) for depth specific relationships were 0.87 (0.05 m depth), 0.46 (0.10 m depth), 0.86 (0.20 m depth) and 0.66 (all depths combined). This study showed a great potential of the AHFO technique to measure soil water at high spatial resolutions (<1 m) and to monitor soil water dynamics of surface soil in a crop grown field over a cropping season with a reasonable compromise between accuracy and practicality.

Depth image enhancement using perceptual texture priors

NASA Astrophysics Data System (ADS)

Bang, Duhyeon; Shim, Hyunjung

2015-03-01

A depth camera is widely used in various applications because it provides a depth image of the scene in real time. However, due to the limited power consumption, the depth camera presents severe noises, incapable of providing the high quality 3D data. Although the smoothness prior is often employed to subside the depth noise, it discards the geometric details so to degrade the distance resolution and hinder achieving the realism in 3D contents. In this paper, we propose a perceptual-based depth image enhancement technique that automatically recovers the depth details of various textures, using a statistical framework inspired by human mechanism of perceiving surface details by texture priors. We construct the database composed of the high quality normals. Based on the recent studies in human visual perception (HVP), we select the pattern density as a primary feature to classify textures. Upon the classification results, we match and substitute the noisy input normals with high quality normals in the database. As a result, our method provides the high quality depth image preserving the surface details. We expect that our work is effective to enhance the details of depth image from 3D sensors and to provide a high-fidelity virtual reality experience.

High-Frequency Focused Water-Coupled Ultrasound Used for Three-Dimensional Surface Depression Profiling

NASA Technical Reports Server (NTRS)

Roth, Don J.; Whalen, Mike F.; Hendricks, J. Lynne; Bodis, James R.

2001-01-01

To interface with other solids, many surfaces are engineered via methods such as plating, coating, and machining to produce a functional surface ensuring successful end products. In addition, subsurface properties such as hardness, residual stress, deformation, chemical composition, and microstructure are often linked to surface characteristics. Surface topography, therefore, contains the signatures of the surface and possibly links to volumetric properties, and as a result serves as a vital link between surface design, manufacturing, and performance. Hence, surface topography can be used to diagnose, monitor, and control fabrication methods. At the NASA Glenn Research Center, the measurement of surface topography is important in developing high-temperature structural materials and for profiling the surface changes of materials during microgravity combustion experiments. A prior study demonstrated that focused air-coupled ultrasound at 1 MHz could profile surfaces with a 25-m depth resolution and a 400-m lateral resolution over a 1.4-mm depth range. In this work, we address the question of whether higher frequency focused water-coupled ultrasound can improve on these specifications. To this end, we employed 10- and 25-MHz focused ultrasonic transducers in the water-coupled mode. The surface profile results seen in this investigation for 25-MHz water-coupled ultrasound, in comparison to those for 1-MHz air-coupled ultrasound, represent an 8 times improvement in depth resolution (3 vs. 25 m seen in practice), an improvement of at least 2 times in lateral resolution (180 vs. 400 m calculated and observed in practice), and an improvement in vertical depth range of 4 times (calculated).

Feasibility of high-resolution one-dimensional relaxation imaging at low magnetic field using a single-sided NMR scanner applied to articular cartilage.

PubMed

Rössler, Erik; Mattea, Carlos; Stapf, Siegfried

2015-02-01

Low field Nuclear Magnetic Resonance increases the contrast of the longitudinal relaxation rate in many biological tissues; one prominent example is hyaline articular cartilage. In order to take advantage of this increased contrast and to profile the depth-dependent variations, high resolution parameter measurements are carried out which can be of critical importance in an early diagnosis of cartilage diseases such as osteoarthritis. However, the maximum achievable spatial resolution of parameter profiles is limited by factors such as sensor geometry, sample curvature, and diffusion limitation. In this work, we report on high-resolution single-sided NMR scanner measurements with a commercial device, and quantify these limitations. The highest achievable spatial resolution on the used profiler, and the lateral dimension of the sensitive volume were determined. Since articular cartilage samples are usually bent, we also focus on averaging effects inside the horizontally aligned sensitive volume and their impact on the relaxation profiles. Taking these critical parameters into consideration, depth-dependent relaxation time profiles with the maximum achievable vertical resolution of 20 μm are discussed, and are correlated with diffusion coefficient profiles in hyaline articular cartilage in order to reconstruct T(2) maps from the diffusion-weighted CPMG decays of apparent relaxation rates. Copyright © 2014 Elsevier Inc. All rights reserved.

Using high resolution Lidar data from SnowEx to characterize the sensitivity of snow depth retrievals to point-cloud density and vegetation

NASA Astrophysics Data System (ADS)

Patterson, V. M.; Bormann, K.; Deems, J. S.; Painter, T. H.

2017-12-01

The NASA SnowEx campaign conducted in 2016 and 2017 provides a rich source of high-resolution Lidar data from JPL's Airborne Snow Observatory (ASO - http://aso.jpl.nasa.gov) combined with extensive in-situ measurements in two key areas in Colorado: Grand Mesa and Senator Beck. While the uncertainty in the 50m snow depth retrievals from NASA's ASO been estimated at 1-2cm in non-vegetated exposed areas (Painter et al., 2016), the impact of forest cover and point-cloud density on ASO snow lidar depth retrievals is relatively unknown. Dense forest canopies are known to reduce lidar penetration and ground strikes thus affecting the elevation surface retrieved from in the forest. Using high-resolution lidar point cloud data from the ASO SnowEx campaigns (26pt/m2) we applied a series of data decimations (up to 90% point reduction) to the point cloud data to quantify the relationship between vegetation, ground point density, resulting snow-off and snow-on surface elevations and finally snow depth. We observed non-linear reductions in lidar ground point density in forested areas that were strongly correlated to structural forest cover metrics. Previously, the impacts of these data decimations on a small study area in Grand Mesa showed a sharp increase in under-canopy surface elevation errors of -0.18m when ground point densities were reduced to 1.5pt/m2. In this study, we expanded the evaluation to the more topographically challenging Senator Beck basin, have conducted analysis along a vegetation gradient and are considering snow the impacts of snow depth rather than snow-off surface elevation. Preliminary analysis suggest that snow depth retrievals inferred from airborne lidar elevation differentials may systematically underestimate snow depth in forests where canopy density exceeds 1.75 and where tree heights exceed 5m. These results provide a basis from which to identify areas that may suffer from vegetation-induced biases in surface elevation models and snow depths derived from airborne lidar data, and help quantify expected spatial distributions of errors in the snow depth that can be used to improve the accuracy of ASO basin-scale depth and water equivalent products.

Shear wave modelling of high resolution OBS data in a gas hydrate environment in the Danube deep-sea fan, Black Sea

NASA Astrophysics Data System (ADS)

Dannowski, A.; Bialas, J.; Zander, T.; Klaeschen, D.

2016-12-01

The Danube deep-sea fan, with his ancient channel-levee systems, hosts multiple bottom-simulating reflections (BSRs) observed in high-resolution reflection seismic data, indicating the occurrence of gas hydrates and free gas. To image the distribution of submarine gas hydrates and the occurrence of free gas in a channel-levee system, high-resolution 2D and 3D multichannel seismic reflection data were collected and fifteen ocean bottom seismometers (OBS) were deployed. The OBS data in particular reveal information about seismic P- and S-wave velocities of the subsurface. They record wave fields of a wide range of incidence angles. Both, P- and S-wave traveltime modelling cover a depth down to 1.5 km below the seafloor; thus, providing seismic velocity information far below the BSR. The seismic P-wave velocities increase with depth from 1600 m/s beneath the seafloor up to 2400 m/s at 1.5 km depth. The frequencies of the S-waves are much lower than the P-wave reflection signals. This is characteristic for shear waves in unconsolidated sediments where the S-wave attenuation is high. However, they travel much slower than P-waves and thus, show a higher resolution. The first S-wave appears at 0.7 s after the direct wave. Some of the S-phases can be traced up to 3.5 km in offset to the station. The seismic S-wave velocities increase from 240 m/s beneath the seafloor up to 1100 m/s at a depth of 1.5 km below the seafloor. From these observations, the P-to-S ratio can be derived. The P-to-S ratio might help to estimate the thickness of the zones with gas hydrates and free gas, while there will be a limited capability to constrain their concentrations.

Effect of elevation resolution on evapotranspiration simulations using MODFLOW.

PubMed

Kambhammettu, B V N P; Schmid, Wolfgang; King, James P; Creel, Bobby J

2012-01-01

Surface elevations represented in MODFLOW head-dependent packages are usually derived from digital elevation models (DEMs) that are available at much high resolution. Conventional grid refinement techniques to simulate the model at DEM resolution increases computational time, input file size, and in many cases are not feasible for regional applications. This research aims at utilizing the increasingly available high resolution DEMs for effective simulation of evapotranspiration (ET) in MODFLOW as an alternative to grid refinement techniques. The source code of the evapotranspiration package is modified by considering for a fixed MODFLOW grid resolution and for different DEM resolutions, the effect of variability in elevation data on ET estimates. Piezometric head at each DEM cell location is corrected by considering the gradient along row and column directions. Applicability of the research is tested for the lower Rio Grande (LRG) Basin in southern New Mexico. The DEM at 10 m resolution is aggregated to resampled DEM grid resolutions which are integer multiples of MODFLOW grid resolution. Cumulative outflows and ET rates are compared at different coarse resolution grids. Results of the analysis conclude that variability in depth-to-groundwater within the MODFLOW cell is a major contributing parameter to ET outflows in shallow groundwater regions. DEM aggregation methods for the LRG Basin have resulted in decreased volumetric outflow due to the formation of a smoothing error, which lowered the position of water table to a level below the extinction depth. © 2011, The Author(s). Ground Water © 2011, National Ground Water Association.

Television monitor field shifter and an opto-electronic method for obtaining a stereo image of optimal depth resolution and reduced depth distortion on a single screen

NASA Technical Reports Server (NTRS)

Diner, Daniel B. (Inventor)

1989-01-01

A method and apparatus is developed for obtaining a stereo image with reduced depth distortion and optimum depth resolution. Static and dynamic depth distortion and depth resolution tradeoff is provided. Cameras obtaining the images for a stereo view are converged at a convergence point behind the object to be presented in the image, and the collection-surface-to-object distance, the camera separation distance, and the focal lengths of zoom lenses for the cameras are all increased. Doubling the distances cuts the static depth distortion in half while maintaining image size and depth resolution. Dynamic depth distortion is minimized by panning a stereo view-collecting camera system about a circle which passes through the convergence point and the camera's first nodal points. Horizontal field shifting of the television fields on a television monitor brings both the monitor and the stereo views within the viewer's limit of binocular fusion.

Seismic evidence for an extensive gas-bearing layer at shallow depth, offshore from Prudhoe Bay, Alaska

USGS Publications Warehouse

Boucher, G.; Reimnitz, E.; Kempema, E.

1981-01-01

High-resolution seismic reflection data, recorded offshore from Prudhoe Bay, Alaska, were processed digitally to determine the reflectivity structure of the uppermost layers of the seafloor. A prominent reflector, found at 27 m below the mud line (water depths 7-9 m), has a negative reflection coefficient greater than 0.5. The large acoustic impedance contrast, coupled with a report of gas encountered at a corresponding depth in a nearby drillhole, shows that the reflector is the upper boundary of a zone containing gas. The gas exists in sandy gravel capped by stiff, silty clay. Analysis of unprocessed conventional high-resolution records from the region indicates that the gas-bearing layer may extend over an area of at least 50 km2 at a depth of 20-35 m below the mud line. Similar-appearing reflectors (Reimnitz, 1972), previously unexplained, occur in patches over wide regions of the shelf where offshore oil development is beginning at a rapid pace. This suggests the exercise of caution with respect to possible hazards from shallow gas pockets.

High-resolution diapycnal mixing map of the Alboran Sea thermocline from seismic reflection images

NASA Astrophysics Data System (ADS)

Mojica, Jhon F.; Sallarès, Valentí; Biescas, Berta

2018-06-01

The Alboran Sea is a dynamically active region where the salty and warm Mediterranean water first encounters the incoming milder and cooler Atlantic water. The interaction between these two water masses originates a set of sub-mesoscale structures and a complex sequence of processes that entail mixing close to the thermocline. Here we present a high-resolution map of the diapycnal diffusivity around the thermocline depth obtained using acoustic data recorded with a high-resolution multichannel seismic system. The map reveals a patchy thermocline, with spots of strong diapycnal mixing juxtaposed with areas of weaker mixing. The patch size is of a few kilometers in the horizontal scale and of 10-15 m in the vertical one. The comparison of the obtained maps with the original acoustic images shows that mixing tends to concentrate in areas where internal waves, which are ubiquitous in the surveyed area, become unstable and shear instabilities develop, enhancing energy transfer towards the turbulent regime. These results are also compared with others obtained using more conventional oceanographic probes. The values estimated based on the seismic data are within the ranges of values obtained from oceanographic data analysis, and they are also consistent with reference theoretical values. Overall, our results demonstrate that high-resolution seismic systems allow the remote quantification of mixing at the thermocline depth with unprecedented resolution.

Single-shot dimension measurements of the mouse eye using SD-OCT.

PubMed

Jiang, Minshan; Wu, Pei-Chang; Fini, M Elizabeth; Tsai, Chia-Ling; Itakura, Tatsuo; Zhang, Xiangyang; Jiao, Shuliang

2012-01-01

The authors demonstrate the feasibility and advantage of spectral-domain optical coherence tomography (SD-OCT) for single-shot ocular biometric measurement during the development of the mouse eye. A high-resolution SD-OCT system was built for single-shot imaging of the whole mouse eye in vivo. The axial resolution and imaging depth of the system are 4.5 μm (in tissue) and 5.2 mm, respectively. The system is capable of acquiring a cross-sectional OCT image consisting of 2,048 depth scans in 85 ms. The imaging capability of the SD-OCT system was validated by imaging the normal ocular growth and experimental myopia model using C57BL/6J mice. The biometric dimensions of the mouse eye can be calculated directly from one snapshot of the SD-OCT image. The biometric parameters of the mouse eye including axial length, corneal thickness, anterior chamber depth, lens thickness, vitreous chamber depth, and retinal thickness were successfully measured by the SD-OCT. In the normal ocular growth group, the axial length increased significantly from 28 to 82 days of age (P < .001). The lens thickness increased and the vitreous chamber depth decreased significantly during this period (P < .001 and P = .001, respectively). In the experimental myopia group, there were significant increases in vitreous chamber depth and axial length in comparison to the control eyes (P = .040 and P < .001, respectively). SD-OCT is capable of providing single-shot direct, fast, and high-resolution measurements of the dimensions of young and adult mouse eyes. As a result, SD-OCT is a potentially powerful tool that can be easily applied to research in eye development and myopia using small animal models. Copyright 2012, SLACK Incorporated.

Inorganic material profiling using Arn+ cluster: Can we achieve high quality profiles?

NASA Astrophysics Data System (ADS)

Conard, T.; Fleischmann, C.; Havelund, R.; Franquet, A.; Poleunis, C.; Delcorte, A.; Vandervorst, W.

2018-06-01

Retrieving molecular information by sputtering of organic systems has been concretized in the last years due to the introduction of sputtering by large gas clusters which drastically eliminated the compound degradation during the analysis and has led to strong improvements in depth resolution. Rapidly however, a limitation was observed for heterogeneous systems where inorganic layers or structures needed to be profiled concurrently. As opposed to organic material, erosion of the inorganic layer appears very difficult and prone to many artefacts. To shed some light on these problems we investigated a simple system consisting of aluminum delta layer(s) buried in a silicon matrix in order to define the most favorable beam conditions for practical analysis. We show that counterintuitive to the small energy/atom used and unlike monoatomic ion sputtering, the information depth obtained with large cluster ions is typically very large (∼10 nm) and that this can be caused both by a large roughness development at early stages of the sputtering process and by a large mixing zone. As a consequence, a large deformation of the Al intensity profile is observed. Using sample rotation during profiling significantly improves the depth resolution while sample temperature has no significant effect. The determining parameter for high depth resolution still remains the total energy of the cluster instead of the energy per atom in the cluster.

Estimating floodwater depths from flood inundation maps and topography

USGS Publications Warehouse

Cohen, Sagy; Brakenridge, G. Robert; Kettner, Albert; Bates, Bradford; Nelson, Jonathan M.; McDonald, Richard R.; Huang, Yu-Fen; Munasinghe, Dinuke; Zhang, Jiaqi

2018-01-01

Information on flood inundation extent is important for understanding societal exposure, water storage volumes, flood wave attenuation, future flood hazard, and other variables. A number of organizations now provide flood inundation maps based on satellite remote sensing. These data products can efficiently and accurately provide the areal extent of a flood event, but do not provide floodwater depth, an important attribute for first responders and damage assessment. Here we present a new methodology and a GIS-based tool, the Floodwater Depth Estimation Tool (FwDET), for estimating floodwater depth based solely on an inundation map and a digital elevation model (DEM). We compare the FwDET results against water depth maps derived from hydraulic simulation of two flood events, a large-scale event for which we use medium resolution input layer (10 m) and a small-scale event for which we use a high-resolution (LiDAR; 1 m) input. Further testing is performed for two inundation maps with a number of challenging features that include a narrow valley, a large reservoir, and an urban setting. The results show FwDET can accurately calculate floodwater depth for diverse flooding scenarios but also leads to considerable bias in locations where the inundation extent does not align well with the DEM. In these locations, manual adjustment or higher spatial resolution input is required.

3D endoscopic imaging using structured illumination technique (Conference Presentation)

NASA Astrophysics Data System (ADS)

Le, Hanh N. D.; Nguyen, Hieu; Wang, Zhaoyang; Kang, Jin U.

2017-02-01

Surgeons have been increasingly relying on minimally invasive surgical guidance techniques not only to reduce surgical trauma but also to achieve accurate and objective surgical risk evaluations. A typical minimally invasive surgical guidance system provides visual assistance in two-dimensional anatomy and pathology of internal organ within a limited field of view. In this work, we propose and implement a structure illumination endoscope to provide a simple, inexpensive 3D endoscopic imaging to conduct high resolution 3D imagery for use in surgical guidance system. The system is calibrated and validated for quantitative depth measurement in both calibrated target and human subject. The system exhibits a depth of field of 20 mm, depth resolution of 0.2mm and a relative accuracy of 0.1%. The demonstrated setup affirms the feasibility of using the structured illumination endoscope for depth quantization and assisting medical diagnostic assessments

Ultrahigh resolution optical coherence elastography using a Bessel beam for extended depth of field

NASA Astrophysics Data System (ADS)

Curatolo, Andrea; Villiger, Martin; Lorenser, Dirk; Wijesinghe, Philip; Fritz, Alexander; Kennedy, Brendan F.; Sampson, David D.

2016-03-01

Visualizing stiffness within the local tissue environment at the cellular and sub-cellular level promises to provide insight into the genesis and progression of disease. In this paper, we propose ultrahigh-resolution optical coherence elastography, and demonstrate three-dimensional imaging of local axial strain of tissues undergoing compressive loading. The technique employs a dual-arm extended focus optical coherence microscope to measure tissue displacement under compression. The system uses a broad bandwidth supercontinuum source for ultrahigh axial resolution, Bessel beam illumination and Gaussian beam detection, maintaining sub-2 μm transverse resolution over nearly 100 μm depth of field, and spectral-domain detection allowing high displacement sensitivity. The system produces strain elastograms with a record resolution (x,y,z) of 2×2×15 μm. We benchmark the advances in terms of resolution and strain sensitivity by imaging a suitable inclusion phantom. We also demonstrate this performance on freshly excised mouse aorta and reveal the mechanical heterogeneity of vascular smooth muscle cells and elastin sheets, otherwise unresolved in a typical, lower resolution optical coherence elastography system.

Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry

PubMed Central

Choi, Heejin; Wadduwage, Dushan; Matsudaira, Paul T.; So, Peter T.C.

2014-01-01

A depth resolved hyperspectral imaging spectrometer can provide depth resolved imaging both in the spatial and the spectral domain. Images acquired through a standard imaging Fourier transform spectrometer do not have the depth-resolution. By post processing the spectral cubes (x, y, λ) obtained through a Sagnac interferometer under uniform illumination and structured illumination, spectrally resolved images with depth resolution can be recovered using structured light illumination algorithms such as the HiLo method. The proposed scheme is validated with in vitro specimens including fluorescent solution and fluorescent beads with known spectra. The system is further demonstrated in quantifying spectra from 3D resolved features in biological specimens. The system has demonstrated depth resolution of 1.8 μm and spectral resolution of 7 nm respectively. PMID:25360367

Mapping Snow Depth with Automated Terrestrial Laser Scanning - Investigating Potential Applications

NASA Astrophysics Data System (ADS)

Adams, M. S.; Gigele, T.; Fromm, R.

2017-11-01

This contribution presents an automated terrestrial laser scanning (ATLS) setup, which was used during the winter 2016/17 to monitor the snow depth distribution on a NW-facing slope at a high-alpine study site. We collected data at high temporal [(sub-)daily] and spatial resolution (decimetre-range) over 0.8 km² with a Riegl LPM-321, set in a weather-proof glass fibre enclosure. Two potential ATLS-applications are investigated here: monitoring medium-sized snow avalanche events, and tracking snow depth change caused by snow drift. The results show the ATLS data's high explanatory power and versatility for different snow research questions.

The interplay of contourite and mass-wasting recent sedimentary processes at the Guadalquivir Bank Margin uplift, Gulf of Cadiz: morphological high-resolution approach

NASA Astrophysics Data System (ADS)

Garcia, Marga; Alonso, Belén; Tomas Vazquez, Juan; Ercilla, Gemma; Palomino, Desirée; Estrada, Ferran; Fernandez Puga, Ma Carmen; Lopez Gonzalez, Nieves; Roque, Cristina

2014-05-01

The Gulf of Cadiz records the interplay of a variety of sedimentary processes related to the flow of the Mediterranean Outflow Water (MOW) exiting the Mediterranean Sea, with downslope sedimentary processes and the topography of the region. This work presents detailed morphological features of the Guadalquivir Ridge area, based on high resolution bathymetry and very-high resolution seismic profiles (TOPAS) acquired during the MONTERA cruise. The Guadalquivir Ridge is a SW-NE-oriented relief located on the middle slope of the Gulf of Cadiz (8º-7º10' W). It reaches minimum depths at two highs, one at the Guadalquivir Bank, at the western extreme of the ridge (275 m), and a second one close to the eastern extreme (350 m). The ridge is cut by a gap where the Diego Cao contourite moat is incised forming a narrow, 4-5 km wide, SE-NW oriented channel. It delimits two contourite sheeted drifts (SD) at the northern side of the ridge: the Faro SD at the east (~ 600 m water depth) and the Bartolomeo Dias SD, at the west (~750 m water depth). The SD are relatively flat and become shallower progressively in a SE direction towards the Guadalquivir Ridge. At the SE side of the Guadalquivir Ridge depth increases dramatically where the Huelva and Cadiz contourite channels occur. They are originated by the direct erosion of the Lower Core of the MOW, running at depths of around 1200 m. The Diego Cao channel is related to the Upper Core, which runs at depths of around 800 m (Ambar and Serra, 2007). High resolution data reveal the existence of a variety of features. Semi-circular scarps, up to 10s km long, occur at the SE side of the Guadalquivir Ridge and at the SW side of the Bartolomeo Dias SD, at the rim of the Diego Cao contourite channel. Scarps occur at depths of 550 to 750 m and form steep steps of tens to hundreds of meters and in some cases occur overlapped one on each other at different depths. The second type of feature is a series of circular to ellipse-shaped depressions identified at the NE side of the Faro SD. Depressions are a few km in diameters and up to 100 m deep, and are aligned parallel to the edge of the SD, close to the rim of the Diego Cao. Finally, a valley-shaped depression has been identified at the N side of the Guadalquivir Bank. It is about 30 km long, with incision depths of up to 200 m and it runs parallel to the shape of the bank main relief. This work evaluates the relationship of the Lower and Upper cores of the MOW with the existing topography of the Guadalquivir ridge, as the origin for the identified morphologies, as the result of the interplay of mass-wasting and contouritic processes. Bibliography: Ambar, I., Serra, N., 2007. Intermediate depth circulation: The importance of MW. Workshop on Circum-Iberia Paleoceanography and Paleoclimate, Peniche, Portugal.

Distinct Retinal Capillary Plexuses in Normal Eyes as Observed in Optical Coherence Tomography Angiography Axial Profile Analysis.

PubMed

Hirano, Takao; Chanwimol, Karntida; Weichsel, Julian; Tepelus, Tudor; Sadda, Srinivas

2018-06-20

Optical coherence tomography angiography (OCTA) allows the retinal microvasculature to be visualized at various retinal depths. Previous studies introduced OCTA axial profile analysis and showed regional variations in the number and location of axially distinct vascular retinal plexuses. OCTA acquisition and processing approaches, however, vary in terms of their resulting transverse and axial resolutions, and especially the latter could potentially influence the profile analysis results. Our study imaged normal eyes using the Spectralis OCT2 with a full-spectrum, probabilistic OCTA algorithm, that, in marked contrast to split-spectrum approaches, preserves the original high OCT axial resolution also within the resulting OCTA signal. En face OCTA images are generally created by averaging flow signals over a finite axial depth window. However, we assessed regional OCTA signal profiles at each depth position at full axial resolution. All regions had two sharp vessel density peaks near the inner and outer boundaries of the inner nuclear layer, indicating separate intermediate and deep capillary plexuses. The superficial vascular plexus (SVP) separated into two distinct peaks within the ganglion cell layer in the parafoveal zone. The nasal, superior, and inferior perifovea had a deeper SVP peak that was shifted anteriorly compared to the parafoveal zone. Axial vascular density analysis with high-resolution, full spectrum OCTA thus allows healthy retinal vasculature to be precisely reconstructed and may be useful for clinically assessing retinal pathology.

Simple fiber-optic confocal microscopy with nanoscale depth resolution beyond the diffraction barrier.

PubMed

Ilev, Ilko; Waynant, Ronald; Gannot, Israel; Gandjbakhche, Amir

2007-09-01

A novel fiber-optic confocal approach for ultrahigh depth-resolution (

Effects of immersion depth on super-resolution properties of index-different microsphere-assisted nanoimaging

NASA Astrophysics Data System (ADS)

Zhou, Yi; Tang, Yan; He, Yu; Liu, Xi; Hu, Song

2018-03-01

In related applications of microsphere-assisted super-resolution imaging in biomedical visualization and microfluidic detection, liquids are widely used as background media. For the first time, we quantitatively demonstrate that the maximum irradiances, focal lengths, and waists of photonic nanojets (PNJs) will logically vary with different immersion depths (IMDs). The experimental observations also numerically illustrate the trends of the lateral magnification and field of view (FOV) with the gradual evaporation of ethyl alcohol. This work can provide exact quantitative information for the proper selection of microspheres and IMD for the high-quality discernment of nanostructures.

Prototype pre-clinical PET scanner with depth-of-interaction measurements using single-layer crystal array and single-ended readout

NASA Astrophysics Data System (ADS)

Lee, Min Sun; Kim, Kyeong Yun; Ko, Guen Bae; Lee, Jae Sung

2017-05-01

In this study, we developed a proof-of-concept prototype PET system using a pair of depth-of-interaction (DOI) PET detectors based on the proposed DOI-encoding method and digital silicon photomultiplier (dSiPM). Our novel cost-effective DOI measurement method is based on a triangular-shaped reflector that requires only a single-layer pixelated crystal and single-ended signal readout. The DOI detector consisted of an 18  ×  18 array of unpolished LYSO crystal (1.47  ×  1.47  ×  15 mm3) wrapped with triangular-shaped reflectors. The DOI information was encoded by depth-dependent light distribution tailored by the reflector geometry and DOI correction was performed using four-step depth calibration data and maximum-likelihood (ML) estimation. The detector pair and the object were placed on two motorized rotation stages to demonstrate 12-block ring PET geometry with 11.15 cm diameter. Spatial resolution was measured and phantom and animal imaging studies were performed to investigate imaging performance. All images were reconstructed with and without the DOI correction to examine the impact of our DOI measurement. The pair of dSiPM-based DOI PET detectors showed good physical performances respectively: 2.82 and 3.09 peak-to-valley ratios, 14.30% and 18.95% energy resolution, and 4.28 and 4.24 mm DOI resolution averaged over all crystals and all depths. A sub-millimeter spatial resolution was achieved at the center of the field of view (FOV). After applying ML-based DOI correction, maximum 36.92% improvement was achieved in the radial spatial resolution and a uniform resolution was observed within 5 cm of transverse PET FOV. We successfully acquired phantom and animal images with improved spatial resolution and contrast by using the DOI measurement. The proposed DOI-encoding method was successfully demonstrated in the system level and exhibited good performance, showing its feasibility for animal PET applications with high spatial resolution and sensitivity.

Hyperspectral imaging to investigate the distribution of organic matter and iron down the soil profile

NASA Astrophysics Data System (ADS)

Hobley, Eleanor; Kriegs, Stefanie; Steffens, Markus

2017-04-01

Obtaining reliable and accurate data regarding the spatial distribution of different soil components is difficult due to issues related with sampling scale and resolution on the one hand and laboratory analysis on the other. When investigating the chemical composition of soil, studies frequently limit themselves to two dimensional characterisations, e.g. spatial variability near the surface or depth distribution down the profile, but rarely combine both approaches due to limitations to sampling and analytical capacities. Furthermore, when assessing depth distributions, samples are taken according to horizon or depth increments, resulting in a mixed sample across the sampling depth. Whilst this facilitates mean content estimation per depth increment and therefore reduces analytical costs, the sample information content with regards to heterogeneity within the profile is lost. Hyperspectral imaging can overcome these sampling limitations, yielding high resolution spectral data of down the soil profile, greatly enhancing the information content of the samples. This can then be used to augment horizontal spatial characterisation of a site, yielding three dimensional information into the distribution of spectral characteristics across a site and down the profile. Soil spectral characteristics are associated with specific chemical components of soil, such as soil organic matter or iron contents. By correlating the content of these soil components with their spectral behaviour, high resolution multi-dimensional analysis of soil chemical composition can be obtained. Here we present a hyperspectral approach to the characterisation of soil organic matter and iron down different soil profiles, outlining advantages and issues associated with the methodology.

Multidepth imaging by chromatic dispersion confocal microscopy

NASA Astrophysics Data System (ADS)

Olsovsky, Cory A.; Shelton, Ryan L.; Saldua, Meagan A.; Carrasco-Zevallos, Oscar; Applegate, Brian E.; Maitland, Kristen C.

2012-03-01

Confocal microscopy has shown potential as an imaging technique to detect precancer. Imaging cellular features throughout the depth of epithelial tissue may provide useful information for diagnosis. However, the current in vivo axial scanning techniques for confocal microscopy are cumbersome, time-consuming, and restrictive when attempting to reconstruct volumetric images acquired in breathing patients. Chromatic dispersion confocal microscopy (CDCM) exploits severe longitudinal chromatic aberration in the system to axially disperse light from a broadband source and, ultimately, spectrally encode high resolution images along the depth of the object. Hyperchromat lenses are designed to have severe and linear longitudinal chromatic aberration, but have not yet been used in confocal microscopy. We use a hyperchromat lens in a stage scanning confocal microscope to demonstrate the capability to simultaneously capture information at multiple depths without mechanical scanning. A photonic crystal fiber pumped with a 830nm wavelength Ti:Sapphire laser was used as a supercontinuum source, and a spectrometer was used as the detector. The chromatic aberration and magnification in the system give a focal shift of 140μm after the objective lens and an axial resolution of 5.2-7.6μm over the wavelength range from 585nm to 830nm. A 400x400x140μm3 volume of pig cheek epithelium was imaged in a single X-Y scan. Nuclei can be seen at several depths within the epithelium. The capability of this technique to achieve simultaneous high resolution confocal imaging at multiple depths may reduce imaging time and motion artifacts and enable volumetric reconstruction of in vivo confocal images of the epithelium.

High-Frequency Ultrasonic Imaging of the Anterior Segment Using an Annular Array Transducer

PubMed Central

Silverman, Ronald H.; Ketterling, Jeffrey A.; Coleman, D. Jackson

2006-01-01

Objective Very-high-frequency (>35 MHz) ultrasound (VHFU) allows imaging of anterior segment structures of the eye with a resolution of less than 40-μm. The low focal ratio of VHFU transducers, however, results in a depth-of-field (DOF) of less than 1-mm. Our aim was to develop a high-frequency annular array transducer for ocular imaging with improved DOF, sensitivity and resolution compared to conventional transducers. Design Experimental Study Participants Cadaver eyes, ex vivo cow eyes, in vivo rabbit eyes. Methods A spherically curved annular array ultrasound transducer was fabricated. The array consisted of five concentric rings of equal area, had an overall aperture of 6 mm and a geometric focus of 12 mm. The nominal center frequency of all array elements was 40 MHz. An experimental system was designed in which a single array element was pulsed and echo data recorded from all elements. By sequentially pulsing each element, echo data were acquired for all 25 transmit/receive annuli combinations. The echo data were then synthetically focused and composite images produced. Transducer operation was tested by scanning a test object consisting of a series of 25-μm diameter wires spaced at increasing range from the transducer. Imaging capabilities of the annular array were demonstrated in ex vivo bovine, in vivo rabbit and human cadaver eyes. Main Outcome Measures Depth of field, resolution and sensitivity. Results The wire scans verified the operation of the array and demonstrated a 6.0 mm DOF compared to the 1.0 mm DOF of a conventional single-element transducer of comparable frequency, aperture and focal length. B-mode images of ex vivo bovine, in vivo rabbit and cadaver eyes showed that while the single-element transducer had high sensitivity and resolution within 1–2 mm of its focus, the array with synthetic focusing maintained this quality over a 6 mm DOF. Conclusion An annular array for high-resolution ocular imaging has been demonstrated. This technology offers improved depth-of-field, sensitivity and lateral resolution compared to single-element fixed focus transducers currently used for VHFU imaging of the eye. PMID:17141314

Seasonal and developmental differences in blubber stores of beluga whales in Bristol Bay, Alaska using high-resolution ultrasound

PubMed Central

Cornick, Leslie A.; Quakenbush, Lori T.; Norman, Stephanie A.; Pasi, Coral; Maslyk, Pamela; Burek, Kathy A.; Goertz, Caroline E. C.; Hobbs, Roderick C.

2016-01-01

Abstract Diving mammals use blubber for a variety of structural and physiological functions, including buoyancy, streamlining, thermoregulation, and energy storage. Estimating blubber stores provides proxies for body condition, nutritional status, and health. Blubber stores may vary topographically within individuals, across seasons, and with age, sex, and reproductive status; therefore, a single full-depth blubber biopsy does not provide an accurate measure of blubber depth, and additional biopsies are limited because they result in open wounds. We examined high-resolution ultrasound as a noninvasive method for assessing blubber stores by sampling blubber depth at 11 locations on beluga whales in Alaska. Blubber mass was estimated as a proportion of body mass (40% from the literature) and compared to a function of volume calculated using ultrasound blubber depth measurements in a truncated cone. Blubber volume was converted to total and mass-specific blubber mass estimates based on the density of beluga blubber. There was no significant difference in mean total blubber mass between the 2 estimates (R2 = 0.88); however, body mass alone predicted only 68% of the variation in mass-specific blubber stores in juveniles, 7% for adults in the fall, and 33% for adults in the spring. Mass-specific blubber stores calculated from ultrasound measurements were highly variable. Adults had significantly greater blubber stores in the fall (0.48±0.02kg/kgMB) than in the spring (0.33±0.02kg/kgMB). There was no seasonal effect in juveniles. High-resolution ultrasound is a more powerful, noninvasive method for assessing blubber stores in wild belugas, allowing for precise measurements at multiple locations. PMID:29899579

Mapping the human atria with optical coherence tomography

NASA Astrophysics Data System (ADS)

Lye, Theresa H.; Gan, Yu; Hendon, Christine P.

2017-02-01

Atrial structure plays an important role in the mechanisms of atrial disease. However, detailed imaging of human atria remains limited due to many imaging modalities lacking sufficient resolution. We propose the use of optical coherence tomography (OCT), which has micrometer resolution and millimeter-scale imaging depth well-suited for the atria, combined with image stitching algorithms, to develop large, detailed atria image maps. Human atria samples (n = 7) were obtained under approved protocols from the National Disease Research Interchange (NDRI). One right atria sample was imaged using an ultrahigh-resolution spectral domain OCT system, with 5.52 and 2.72 μm lateral and axial resolution in air, respectively, and 1.78 mm imaging depth. Six left atria and five pulmonary vein samples were imaged using the spectral domain OCT system, Telesto I (Thorlabs GmbH, Germany) with 15 and 6.5 μm lateral and axial resolution in air, respectively, and 2.51 mm imaging depth. Overlapping image volumes were obtained from areas of the human left and right atria and the pulmonary veins. Regions of collagen, adipose, and myocardium could be identified within the OCT images. Image stitching was applied to generate fields of view with side dimensions up to about 3 cm. This study established steps towards mapping large regions of the human atria and pulmonary veins in high resolution using OCT.

Super-resolution photon-efficient imaging by nanometric double-helix point spread function localization of emitters (SPINDLE)

PubMed Central

Grover, Ginni; DeLuca, Keith; Quirin, Sean; DeLuca, Jennifer; Piestun, Rafael

2012-01-01

Super-resolution imaging with photo-activatable or photo-switchable probes is a promising tool in biological applications to reveal previously unresolved intra-cellular details with visible light. This field benefits from developments in the areas of molecular probes, optical systems, and computational post-processing of the data. The joint design of optics and reconstruction processes using double-helix point spread functions (DH-PSF) provides high resolution three-dimensional (3D) imaging over a long depth-of-field. We demonstrate for the first time a method integrating a Fisher information efficient DH-PSF design, a surface relief optical phase mask, and an optimal 3D localization estimator. 3D super-resolution imaging using photo-switchable dyes reveals the 3D microtubule network in mammalian cells with localization precision approaching the information theoretical limit over a depth of 1.2 µm. PMID:23187521

Monte Carlo simulation of the spatial resolution and depth sensitivity of two-dimensional optical imaging of the brain

PubMed Central

Tian, Peifang; Devor, Anna; Sakadžić, Sava; Dale, Anders M.; Boas, David A.

2011-01-01

Absorption or fluorescence-based two-dimensional (2-D) optical imaging is widely employed in functional brain imaging. The image is a weighted sum of the real signal from the tissue at different depths. This weighting function is defined as “depth sensitivity.” Characterizing depth sensitivity and spatial resolution is important to better interpret the functional imaging data. However, due to light scattering and absorption in biological tissues, our knowledge of these is incomplete. We use Monte Carlo simulations to carry out a systematic study of spatial resolution and depth sensitivity for 2-D optical imaging methods with configurations typically encountered in functional brain imaging. We found the following: (i) the spatial resolution is <200 μm for NA ≤0.2 or focal plane depth ≤300 μm. (ii) More than 97% of the signal comes from the top 500 μm of the tissue. (iii) For activated columns with lateral size larger than spatial resolution, changing numerical aperature (NA) and focal plane depth does not affect depth sensitivity. (iv) For either smaller columns or large columns covered by surface vessels, increasing NA and∕or focal plane depth may improve depth sensitivity at deeper layers. Our results provide valuable guidance for the optimization of optical imaging systems and data interpretation. PMID:21280912

High Resolution Continuous Flow Analysis System for Polar Ice Cores

NASA Astrophysics Data System (ADS)

Dallmayr, Remi; Azuma, Kumiko; Yamada, Hironobu; Kjær, Helle Astrid; Vallelonga, Paul; Azuma, Nobuhiko; Takata, Morimasa

2014-05-01

In the last decades, Continuous Flow Analysis (CFA) technology for ice core analyses has been developed to reconstruct the past changes of the climate system 1), 2). Compared with traditional analyses of discrete samples, a CFA system offers much faster and higher depth resolution analyses. It also generates a decontaminated sample stream without time-consuming sample processing procedure by using the inner area of an ice-core sample.. The CFA system that we have been developing is currently able to continuously measure stable water isotopes 3) and electrolytic conductivity, as well as to collect discrete samples for the both inner and outer areas with variable depth resolutions. Chemistry analyses4) and methane-gas analysis 5) are planned to be added using the continuous water stream system 5). In order to optimize the resolution of the current system with minimal sample volumes necessary for different analyses, our CFA system typically melts an ice core at 1.6 cm/min. Instead of using a wire position encoder with typical 1mm positioning resolution 6), we decided to use a high-accuracy CCD Laser displacement sensor (LKG-G505, Keyence). At the 1.6 cm/min melt rate, the positioning resolution was increased to 0.27mm. Also, the mixing volume that occurs in our open split debubbler is regulated using its weight. The overflow pumping rate is smoothly PID controlled to maintain the weight as low as possible, while keeping a safety buffer of water to avoid air bubbles downstream. To evaluate the system's depth-resolution, we will present the preliminary data of electrolytic conductivity obtained by melting 12 bags of the North Greenland Eemian Ice Drilling (NEEM) ice core. The samples correspond to different climate intervals (Greenland Stadial 21, 22, Greenland Stadial 5, Greenland Interstadial 5, Greenland Interstadial 7, Greenland Stadial 8). We will present results for the Greenland Stadial -8, whose depths and ages are between 1723.7 and 1724.8 meters, and 35.520 to 35.636 kyr b2k 7), respectively. The results show the conductivity measured upstream and downstream of the debubbler. We will calculate the depth resolution of our system and compare it with earlier studies. 1) Bigler at al, "Optimization of High-Resolution Continuous Flow Analysis For Transient Climate Signals in Ice Cores". Environ. Sci. Technol. 2011, 45, 4483-4489 2) Kaufmann et al, "An Improved Continuous Flow Analysis System for High Resolution Field Measurements on Ice Cores". Environmental Environ. Sci. Technol. 2008, 42, 8044-8050 3) Gkinis, V., T. J. Popp, S. J. Johnsen and T, Blunier, 2010: A continuous stream flash evaporator for the calibration of an IR cavity ring down spectrometer for the isotopic analysis of water. Isotopes in Environmental and Health Studies, 46(4), 463-475. 4) McConnell et al, "Continuous ice-core chemical analyses using inductively coupled plasma mass spectrometry. Environ. Sci. Technol. 2002, 36, 7-11 5) Rhodes et al, "Continuous methane measurements from a late Holocene Greenland ice core : Atmospheric and in-situ signals" Earth and Planetary Science Letters. 2013, 368, 9-19 6) Breton et al, "Quantifying Signal Dispersion in a Hybrid Ice Core Melting System". Environ. Sci. Technol. 2012, 46, 11922-11928 7) Rasmussen et al, " A first chronology for the NEEM ice core". Climate of the Past. 2013, 9, 2967--3013

High-resolution seismic-reflection images across the ICDP-USGS Eyreville deep drilling site, Chesapeake Bay impact structure

USGS Publications Warehouse

Powars, D.S.; Catchings, R.D.; Goldman, M.R.; Gohn, G.S.; Horton, J. Wright; Edwards, L.E.; Rymer, M.J.; Gandhok, G.

2009-01-01

The U.S. Geological Survey (USGS) acquired two 1.4-km-long, high-resolution (??5 m vertical resolution) seismic-reflection lines in 2006 that cross near the International Continental Scientifi c Drilling Program (ICDP)-USGS Eyreville deep drilling site located above the late Eocene Chesapeake Bay impact structure in Virginia, USA. Five-meter spacing of seismic sources and geophones produced high-resolution images of the subsurface adjacent to the 1766-m-depth Eyreville core holes. Analysis of these lines, in the context of the core hole stratigraphy, shows that moderateamplitude, discontinuous, dipping reflections below ??527 m correlate with a variety of Chesapeake Bay impact structure sediment and rock breccias recovered in the cores. High-amplitude, continuous, subhorizontal reflections above ??527 m depth correlate with the uppermost part of the Chesapeake Bay impact structure crater-fi ll sediments and postimpact Eocene to Pleistocene sediments. Refl ections with ??20-30 m of relief in the uppermost part of the crater-fi ll and lowermost part of the postimpact section suggest differential compaction of the crater-fi ll materials during early postimpact time. The top of the crater-fi ll section also shows ??20 m of relief that appears to represent an original synimpact surface. Truncation surfaces, locally dipping reflections, and depth variations in reflection amplitudes generally correlate with the lithostratigraphic and sequence-stratigraphic units and contacts in the core. Seismic images show apparent postimpact paleochannels that include the fi rst possible Miocene paleochannels in the Mid-Atlantic Coastal Plain. Broad downwarping in the postimpact section unrelated to structures in the crater fi ll indicates postimpact sediment compaction. ?? 2009 The Geological Society of America.

A Two-Stage Framework for 3D Face Reconstruction from RGBD Images.

PubMed

Wang, Kangkan; Wang, Xianwang; Pan, Zhigeng; Liu, Kai

2014-08-01

This paper proposes a new approach for 3D face reconstruction with RGBD images from an inexpensive commodity sensor. The challenges we face are: 1) substantial random noise and corruption are present in low-resolution depth maps; and 2) there is high degree of variability in pose and face expression. We develop a novel two-stage algorithm that effectively maps low-quality depth maps to realistic face models. Each stage is targeted toward a certain type of noise. The first stage extracts sparse errors from depth patches through the data-driven local sparse coding, while the second stage smooths noise on the boundaries between patches and reconstructs the global shape by combining local shapes using our template-based surface refinement. Our approach does not require any markers or user interaction. We perform quantitative and qualitative evaluations on both synthetic and real test sets. Experimental results show that the proposed approach is able to produce high-resolution 3D face models with high accuracy, even if inputs are of low quality, and have large variations in viewpoint and face expression.

Super-resolution for everybody: An image processing workflow to obtain high-resolution images with a standard confocal microscope.

PubMed

Lam, France; Cladière, Damien; Guillaume, Cyndélia; Wassmann, Katja; Bolte, Susanne

2017-02-15

In the presented work we aimed at improving confocal imaging to obtain highest possible resolution in thick biological samples, such as the mouse oocyte. We therefore developed an image processing workflow that allows improving the lateral and axial resolution of a standard confocal microscope. Our workflow comprises refractive index matching, the optimization of microscope hardware parameters and image restoration by deconvolution. We compare two different deconvolution algorithms, evaluate the necessity of denoising and establish the optimal image restoration procedure. We validate our workflow by imaging sub resolution fluorescent beads and measuring the maximum lateral and axial resolution of the confocal system. Subsequently, we apply the parameters to the imaging and data restoration of fluorescently labelled meiotic spindles of mouse oocytes. We measure a resolution increase of approximately 2-fold in the lateral and 3-fold in the axial direction throughout a depth of 60μm. This demonstrates that with our optimized workflow we reach a resolution that is comparable to 3D-SIM-imaging, but with better depth penetration for confocal images of beads and the biological sample. Copyright © 2016 Elsevier Inc. All rights reserved.

Generalized Nonlinear Chirp Scaling Algorithm for High-Resolution Highly Squint SAR Imaging.

PubMed

Yi, Tianzhu; He, Zhihua; He, Feng; Dong, Zhen; Wu, Manqing

2017-11-07

This paper presents a modified approach for high-resolution, highly squint synthetic aperture radar (SAR) data processing. Several nonlinear chirp scaling (NLCS) algorithms have been proposed to solve the azimuth variance of the frequency modulation rates that are caused by the linear range walk correction (LRWC). However, the azimuth depth of focusing (ADOF) is not handled well by these algorithms. The generalized nonlinear chirp scaling (GNLCS) algorithm that is proposed in this paper uses the method of series reverse (MSR) to improve the ADOF and focusing precision. It also introduces a high order processing kernel to avoid the range block processing. Simulation results show that the GNLCS algorithm can enlarge the ADOF and focusing precision for high-resolution highly squint SAR data.

Derivation and Validation of Supraglacial Lake Volumes on the Greenland Ice Sheet from High-Resolution Satellite Imagery

NASA Technical Reports Server (NTRS)

Moussavi, Mahsa S.; Abdalati, Waleed; Pope, Allen; Scambos, Ted; Tedesco, Marco; MacFerrin, Michael; Grigsby, Shane

2016-01-01

Supraglacial meltwater lakes on the western Greenland Ice Sheet (GrIS) are critical components of its surface hydrology and surface mass balance, and they also affect its ice dynamics. Estimates of lake volume, however, are limited by the availability of in situ measurements of water depth,which in turn also limits the assessment of remotely sensed lake depths. Given the logistical difficulty of collecting physical bathymetric measurements, methods relying upon in situ data are generally restricted to small areas and thus their application to largescale studies is difficult to validate. Here, we produce and validate spaceborne estimates of supraglacial lake volumes across a relatively large area (1250 km(exp 2) of west Greenland's ablation region using data acquired by the WorldView-2 (WV-2) sensor, making use of both its stereo-imaging capability and its meter-scale resolution. We employ spectrally-derived depth retrieval models, which are either based on absolute reflectance (single-channel model) or a ratio of spectral reflectances in two bands (dual-channel model). These models are calibrated by usingWV-2multispectral imagery acquired early in the melt season and depth measurements from a high resolutionWV-2 DEM over the same lake basins when devoid of water. The calibrated models are then validated with different lakes in the area, for which we determined depths. Lake depth estimates based on measurements recorded in WV-2's blue (450-510 nm), green (510-580 nm), and red (630-690 nm) bands and dual-channel modes (blue/green, blue/red, and green/red band combinations) had near-zero bias, an average root-mean-squared deviation of 0.4 m (relative to post-drainage DEMs), and an average volumetric error of b1%. The approach outlined in this study - image-based calibration of depth-retrieval models - significantly improves spaceborne supraglacial bathymetry retrievals, which are completely independent from in situ measurements.

Bed elevation of Jakobshavn Isbræ, West Greenland, from high-resolution airborne gravity and other data

NASA Astrophysics Data System (ADS)

An, L.; Rignot, E.; Elieff, S.; Morlighem, M.; Millan, R.; Mouginot, J.; Holland, D. M.; Holland, D.; Paden, J.

2017-04-01

Jakobshavn Isbræ, West Greenland, which holds a 0.6 m sea level volume equivalent, has been speeding up and retreating since the late 1990s. Interpretation of its retreat has been hindered by difficulties in measuring its ice thickness with airborne radar depth sounders. Here we employ high-resolution, helicopter-borne gravity data from 2012 to reconstruct its bed elevation within 50 km of the ocean margin using a three-dimensional inversion constrained by fjord bathymetry data offshore and a mass conservation algorithm inland. We find the glacier trough to be asymmetric and several 100 m deeper than estimated previously in the lower part. From 1996 to 2016, the grounding line migrated at 0.6 km/yr from 700 m to 1100 m depth. Upstream, the bed drops to 1600 m over 10 km then slowly climbs to 1200 m depth in 40 km. Jakobshavn Isbræ will continue to retreat along a retrograde slope for decades to come.

Depth-resolved multilayer pigment identification in paintings: combined use of laser-induced breakdown spectroscopy (LIBS) and optical coherence tomography (OCT).

PubMed

Kaszewska, Ewa A; Sylwestrzak, Marcin; Marczak, Jan; Skrzeczanowski, Wojciech; Iwanicka, Magdalena; Szmit-Naud, Elżbieta; Anglos, Demetrios; Targowski, Piotr

2013-08-01

A detailed feasibility study on the combined use of laser-induced breakdown spectroscopy with optical coherence tomography (LIBS/OCT), aiming at a realistic depth-resolved elemental analysis of multilayer stratigraphies in paintings, is presented. Merging a high spectral resolution LIBS system with a high spatial resolution spectral OCT instrument significantly enhances the quality and accuracy of stratigraphic analysis. First, OCT mapping is employed prior to LIBS analysis in order to assist the selection of specific areas of interest on the painting surface to be examined in detail. Then, intertwined with LIBS, the OCT instrument is used as a precise profilometer for the online determination of the depth of the ablation crater formed by individual laser pulses during LIBS depth-profile analysis. This approach is novel and enables (i) the precise in-depth scaling of elemental concentration profiles, and (ii) the recognition of layer boundaries by estimating the corresponding differences in material ablation rate. Additionally, the latter is supported, within the transparency of the object, by analysis of the OCT cross-sectional views. The potential of this method is illustrated by presenting results on the detailed analysis of the structure of an historic painting on canvas performed to aid planned restoration of the artwork.

Application of high-resolution linear Radon transform for Rayleigh-wave dispersive energy imaging and mode separating

USGS Publications Warehouse

Luo, Y.; Xia, J.; Miller, R.D.; Liu, J.; Xu, Y.; Liu, Q.

2008-01-01

Multichannel Analysis of Surface Waves (MASW) analysis is an efficient tool to obtain the vertical shear-wave profile. One of the key steps in the MASW method is to generate an image of dispersive energy in the frequency-velocity domain, so dispersion curves can be determined by picking peaks of dispersion energy. In this paper, we image Rayleigh-wave dispersive energy and separate multimodes from a multichannel record by high-resolution linear Radon transform (LRT). We first introduce Rayleigh-wave dispersive energy imaging by high-resolution LRT. We then show the process of Rayleigh-wave mode separation. Results of synthetic and real-world examples demonstrate that (1) compared with slant stacking algorithm, high-resolution LRT can improve the resolution of images of dispersion energy by more than 50% (2) high-resolution LRT can successfully separate multimode dispersive energy of Rayleigh waves with high resolution; and (3) multimode separation and reconstruction expand frequency ranges of higher mode dispersive energy, which not only increases the investigation depth but also provides a means to accurately determine cut-off frequencies.

Benchmarking urban flood models of varying complexity and scale using high resolution terrestrial LiDAR data

NASA Astrophysics Data System (ADS)

Fewtrell, Timothy J.; Duncan, Alastair; Sampson, Christopher C.; Neal, Jeffrey C.; Bates, Paul D.

2011-01-01

This paper describes benchmark testing of a diffusive and an inertial formulation of the de St. Venant equations implemented within the LISFLOOD-FP hydraulic model using high resolution terrestrial LiDAR data. The models are applied to a hypothetical flooding scenario in a section of Alcester, UK which experienced significant surface water flooding in the June and July floods of 2007 in the UK. The sensitivity of water elevation and velocity simulations to model formulation and grid resolution are analyzed. The differences in depth and velocity estimates between the diffusive and inertial approximations are within 10% of the simulated value but inertial effects persist at the wetting front in steep catchments. Both models portray a similar scale dependency between 50 cm and 5 m resolution which reiterates previous findings that errors in coarse scale topographic data sets are significantly larger than differences between numerical approximations. In particular, these results confirm the need to distinctly represent the camber and curbs of roads in the numerical grid when simulating surface water flooding events. Furthermore, although water depth estimates at grid scales coarser than 1 m appear robust, velocity estimates at these scales seem to be inconsistent compared to the 50 cm benchmark. The inertial formulation is shown to reduce computational cost by up to three orders of magnitude at high resolutions thus making simulations at this scale viable in practice compared to diffusive models. For the first time, this paper highlights the utility of high resolution terrestrial LiDAR data to inform small-scale flood risk management studies.

Implications of high-spatial-resolution thermal infrared (Termoskan) data for Mars landing site selection

NASA Technical Reports Server (NTRS)

Betts, Bruce H.

1994-01-01

Thermal infrared observations of Mars from spacecraft provide physical information about the upper thermal skin depth of the surface, which is on the order of a few centimeters in depth and thus very significant for lander site selection. The Termoskan instrument onboard the Soviet Phobos '88 spacecraft acquired the highest spatial-resolution thermal infrared data obtained for Mars, ranging in resolution from 300 m to 3 km per pixel. It simultaneously obtained broadband reflected solar flux data. Although the 6 deg N - 30 deg S Termoskan coverage only slightly overlaps the nominal Mars Pathfinder target range, the implications of Termoskan data for that overlap region and the extrapolations that can be made to other regions give important clues for optimal landing site selection.

Wide-bandwidth, wide-beamwidth, high-resolution, millimeter-wave imaging for concealed weapon detection

NASA Astrophysics Data System (ADS)

Sheen, David M.; Fernandes, Justin L.; Tedeschi, Jonathan R.; McMakin, Douglas L.; Jones, A. Mark; Lechelt, Wayne M.; Severtsen, Ronald H.

2013-05-01

Active millimeter-wave imaging is currently being used for personnel screening at airports and other high-security facilities. The cylindrical imaging techniques used in the deployed systems are based on licensed technology developed at the Pacific Northwest National Laboratory. The cylindrical and a related planar imaging technique form three-dimensional images by scanning a diverging beam swept frequency transceiver over a two-dimensional aperture and mathematically focusing or reconstructing the data into three-dimensional images of the person being screened. The resolution, clothing penetration, and image illumination quality obtained with these techniques can be significantly enhanced through the selection of the aperture size, antenna beamwidth, center frequency, and bandwidth. The lateral resolution can be improved by increasing the center frequency, or it can be increased with a larger antenna beamwidth. The wide beamwidth approach can significantly improve illumination quality relative to a higher frequency system. Additionally, a wide antenna beamwidth allows for operation at a lower center frequency resulting in less scattering and attenuation from the clothing. The depth resolution of the system can be improved by increasing the bandwidth. Utilization of extremely wide bandwidths of up to 30 GHz can result in depth resolution as fine as 5 mm. This wider bandwidth operation may allow for improved detection techniques based on high range resolution. In this paper, the results of an extensive imaging study that explored the advantages of using extremely wide beamwidth and bandwidth are presented, primarily for 10-40 GHz frequency band.

A Verification of Optical Depth Retrievals From High Resolution Satellite Imagery

DTIC Science & Technology

2007-03-01

extraterrestrial solar intensity can be as high as 0.5 in clean atmospheres but can drop to 0.2-0.3 in polluted areas, indicating that ground-level solar... intelligence . Also, lack of temporal resolution can specifically affect time sensitive operations. These early methods and limitations will be...This study showed that panchromatic imagery proved to be quite consistent. Other platforms such as UAVs or other intelligence gathering means

High-resolution ab initio three-dimensional x-ray diffraction microscopy

DOE PAGES

Chapman, Henry N.; Barty, Anton; Marchesini, Stefano; ...

2006-01-01

Coherent x-ray diffraction microscopy is a method of imaging nonperiodic isolated objects at resolutions limited, in principle, by only the wavelength and largest scattering angles recorded. We demonstrate x-ray diffraction imaging with high resolution in all three dimensions, as determined by a quantitative analysis of the reconstructed volume images. These images are retrieved from the three-dimensional diffraction data using no a priori knowledge about the shape or composition of the object, which has never before been demonstrated on a nonperiodic object. We also construct two-dimensional images of thick objects with greatly increased depth of focus (without loss of transverse spatialmore » resolution). These methods can be used to image biological and materials science samples at high resolution with x-ray undulator radiation and establishes the techniques to be used in atomic-resolution ultrafast imaging at x-ray free-electron laser sources.« less

High-Resolution Assimilation of GRACE Terrestrial Water Storage Observations to Represent Local-Scale Water Table Depths

NASA Astrophysics Data System (ADS)

Stampoulis, D.; Reager, J. T., II; David, C. H.; Famiglietti, J. S.; Andreadis, K.

2017-12-01

Despite the numerous advances in hydrologic modeling and improvements in Land Surface Models, an accurate representation of the water table depth (WTD) still does not exist. Data assimilation of observations of the joint NASA and DLR mission, Gravity Recovery and Climate Experiment (GRACE) leads to statistically significant improvements in the accuracy of hydrologic models, ultimately resulting in more reliable estimates of water storage. However, the usually shallow groundwater compartment of the models presents a problem with GRACE assimilation techniques, as these satellite observations account for much deeper aquifers. To improve the accuracy of groundwater estimates and allow the representation of the WTD at fine spatial scales we implemented a novel approach that enables a large-scale data integration system to assimilate GRACE data. This was achieved by augmenting the Variable Infiltration Capacity (VIC) hydrologic model, which is the core component of the Regional Hydrologic Extremes Assessment System (RHEAS), a high-resolution modeling framework developed at the Jet Propulsion Laboratory (JPL) for hydrologic modeling and data assimilation. The model has insufficient subsurface characterization and therefore, to reproduce groundwater variability not only in shallow depths but also in deep aquifers, as well as to allow GRACE assimilation, a fourth soil layer of varying depth ( 1000 meters) was added in VIC as the bottom layer. To initialize a water table in the model we used gridded global WTD data at 1 km resolution which were spatially aggregated to match the model's resolution. Simulations were then performed to test the augmented model's ability to capture seasonal and inter-annual trends of groundwater. The 4-layer version of VIC was run with and without assimilating GRACE Total Water Storage anomalies (TWSA) over the Central Valley in California. This is the first-ever assimilation of GRACE TWSA for the determination of realistic water table depths, at fine scales that are required for local water management. In addition, Open Loop and GRACE-assimilation simulations of water table depth were compared to in-situ data over the state of California, derived from observation wells operated/maintained by the U.S. Geological Service.

High-Resolution Seismic Definition of the Distribution of Gas in the West Svalbard Margin

NASA Astrophysics Data System (ADS)

Minshull, T. A.; Westbrook, G. K.; Marin-Moreno, H.; Marsset, B.; Ker, S.; Sarkar, S.; Vardy, M. E.; Henstock, T.

2014-12-01

The widespread presence of gas beneath the seabed west of Svalbard is shown by negative-polarity high-amplitude reflectors (nephars), imaged in high-resolution near-surface and deep-towed seismic reflection data. The principal controls on the presence of gas are the gas hydrate stability zone (GHSZ), from which free gas is generally excluded, and stratigraphic control of permeable layers. A widespread bottom-simulating reflector (BSR) beneath the lower-mid continental slope indicates gas at the base of the GHSZ. The depth of the base of the GHSZ predicted by a numerical model that takes in to account variation in ocean temperature over the past two thousand years, is consistent with the depth of the BSR, even at its shallowest depth, where a steady-state model places base of the GHSZ shallower than the BSR. Similarly, farther up slope, where the BSR loses it coherency, the depths of the shallowest nephars are compatible with the predicted depth of the base of the GHSZ from the time-dependent model, but are about three times deeper than the predicted steady-state depth of the BSR. This approach to defining the limits of the GHSZ is not precise, as it depends upon the presence of gas. In the shallow sediment sequence, which has a high proportion of glacigenic sediments, gas is restricted to a smaller number of permeable units than in the contourite-dominated sequence farther down the continental slope. Where the seabed is shallower than the GHSZ, numerous plumes of methane gas ascend from the seabed, and gas, which has migrated up slope through dipping permeable layers, locally ponds beneath a thin veneer of unconformable glacial and post-glacial sediments on the continental shelf.

Preliminary evaluation of a monolithic detector module for integrated PET/MRI scanner with high spatial resolution

NASA Astrophysics Data System (ADS)

Pani, R.; Gonzalez, A. J.; Bettiol, M.; Fabbri, A.; Cinti, M. N.; Preziosi, E.; Borrazzo, C.; Conde, P.; Pellegrini, R.; Di Castro, E.; Majewski, S.

2015-06-01

The proposal of Mindview European Project concerns with the development of a very high resolution and high efficiency brain dedicated PET scanner simultaneously working with a Magnetic Resonance scanner, that expects to visualize neurotransmitter pathways and their disruptions in the quest to better diagnose schizophrenia. On behalf of this project, we propose a low cost PET module for the first prototype, based on monolithic crystals, suitable to be integrated with a head Radio Frequency (RF) coil. The aim of the suggested module is to achieve high performances in terms of efficiency, planar spatial resolution (expected about 1 mm) and discrimination of gamma Depth Of Interaction (DOI) in order to reduce the parallax error. Our preliminary results are very promising: a DOI resolution of about 3 mm, a spatial resolution ranging from about 1 to 1.5 mm and a good position linearity.

Testing laser-based sensors for continuous in situ monitoring of suspended sediment in the Colorado River, Arizona

USGS Publications Warehouse

Melis, T.S.; Topping, D.J.; Rubin, D.M.; Bogen, J.; Fergus, T.; Walling, D.

2003-01-01

High-resolution monitoring of sand mass balance in the Colorado River below Glen Canyon Dam, Arizona, USA, is needed for environmental management. In the Grand Canyon, frequent collection of suspended-sediment samples from cableways is logistically complicated, costly and provides limited spatial and temporal resolution. In situ laser sensors were tested in the Colorado River as an alternative method for monitoring the river's suspended transport. LISST data were collected at a fixed-depth, near-shore site while isokinetic measurements were simultaneously made from a nearby cableway. Diurnal variations in LISST grain size and concentration data compared well with depth-integrated, cross-section data. Tbe LISST was also successfully used to electronically trigger an ISCO 6712 pump sampler to provide continuous monitoring during periods when suspended concentrations exceeded the LISST's measurement range. Initial results indicate that the LISST can provide useful high-resolution suspended-sediment data within the Colorado River, when optics are maintained on a weekly basis.

Dynamic-Receive Focusing with High-Frequency Annular Arrays

NASA Astrophysics Data System (ADS)

Ketterling, J. A.; Mamou, J.; Silverman, R. H.

High-frequency ultrasound is commonly employed for ophthalmic and small-animal imaging because of the fine-resolution images it affords. Annular arrays allow improved depth of field and lateral resolution versus commonly used single-element, focused transducers. The best image quality from an annular array is achieved by using synthetic transmit-to-receive focusing while utilizing data from all transmit-to-receive element combinations. However, annular arrays must be laterally scanned to form an image and this requires one pass for each of the array elements when implementing full synthetic transmit-to-receive focusing. A dynamic-receive focusing approach permits a single pass, although at a sacrifice of depth of field and lateral resolution. A five-element, 20-MHz annular array is examined to determine the acoustic beam properties for synthetic and dynamic-receive focusing. A spatial impulse response model is used to simulate the acoustic beam properties for each focusing case and then data acquired from a human eye-bank eye are processed to demonstrate the effect of each approach on image quality.

A weighted optimization approach to time-of-flight sensor fusion.

PubMed

Schwarz, Sebastian; Sjostrom, Marten; Olsson, Roger

2014-01-01

Acquiring scenery depth is a fundamental task in computer vision, with many applications in manufacturing, surveillance, or robotics relying on accurate scenery information. Time-of-flight cameras can provide depth information in real-time and overcome short-comings of traditional stereo analysis. However, they provide limited spatial resolution and sophisticated upscaling algorithms are sought after. In this paper, we present a sensor fusion approach to time-of-flight super resolution, based on the combination of depth and texture sources. Unlike other texture guided approaches, we interpret the depth upscaling process as a weighted energy optimization problem. Three different weights are introduced, employing different available sensor data. The individual weights address object boundaries in depth, depth sensor noise, and temporal consistency. Applied in consecutive order, they form three weighting strategies for time-of-flight super resolution. Objective evaluations show advantages in depth accuracy and for depth image based rendering compared with state-of-the-art depth upscaling. Subjective view synthesis evaluation shows a significant increase in viewer preference by a factor of four in stereoscopic viewing conditions. To the best of our knowledge, this is the first extensive subjective test performed on time-of-flight depth upscaling. Objective and subjective results proof the suitability of our approach to time-of-flight super resolution approach for depth scenery capture.

3D in vivo imaging with extended-focus optical coherence microscopy.

PubMed

Chen, Yu; Trinh, Le A; Fingler, Jeff; Fraser, Scott E

2017-11-01

Optical coherence microscopy (OCM) has unique advantages of non-invasive 3D imaging without the need of exogenous labels for studying biological samples. However, the imaging depth of this technique is limited by the tradeoff between the depth of focus (DOF) and high lateral resolution in Gaussian optics. To overcome this limitation, we have developed an extended-focus OCM (xf-OCM) imaging system using quasi-Bessel beam illumination to extend the DOF to ∼100 μm, about 3-fold greater than standard OCM. High lateral resolution of 1.6 μm ensured detailed identification of structures within live animal samples. The insensitivity to spherical aberrations strengthened the capability of our xf-OCM system in 3D biological imaging. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

THz holography in reflection using a high resolution microbolometer array.

PubMed

Zolliker, Peter; Hack, Erwin

2015-05-04

We demonstrate a digital holographic setup for Terahertz imaging of surfaces in reflection. The set-up is based on a high-power continuous wave (CW) THz laser and a high-resolution (640 × 480 pixel) bolometer detector array. Wave propagation to non-parallel planes is used to reconstruct the object surface that is rotated relative to the detector plane. In addition we implement synthetic aperture methods for resolution enhancement and compare Fourier transform phase retrieval to phase stepping methods. A lateral resolution of 200 μm and a relative phase sensitivity of about 0.4 rad corresponding to a depth resolution of 6 μm are estimated from reconstructed images of two specially prepared test targets, respectively. We highlight the use of digital THz holography for surface profilometry as well as its potential for video-rate imaging.

The effects of temporal variability of mixed layer depth on primary productivity around Bermuda

NASA Technical Reports Server (NTRS)

Bissett, W. Paul; Meyers, Mark B.; Walsh, John J.; Mueller-Karger, Frank E.

1994-01-01

Temporal variations in primary production and surface chlorophyll concentrations, as measured by ship and satellite around Bermuda, were simulated with a numerical model. In the upper 450 m of the water column, population dynamics of a size-fractionated phytoplankton community were forced by daily changes of wind, light, grazing stress, and nutrient availability. The temporal variations of production and chlorophyll were driven by changes in nutrient introduction to the euphotic zone due to both high- and low-frequency changes of the mixed layer depth within 32 deg-34 deg N, 62 deg-64 deg W between 1979 and 1984. Results from the model derived from high-frequency (case 1) changes in the mixed layer depth showed variations in primary production and peak chlorophyll concentrations when compared with results from the model derived from low-frequency (case 2) mixed layer depth changes. Incorporation of size-fractionated plankton state variables in the model led to greater seasonal resolution of measured primary production and vertical chlorophyll profiles. The findings of this study highlight the possible inadequacy of estimating primary production in the sea from data of low-frequency temporal resolution and oversimplified biological simulations.

Two-component Thermal Dust Emission Model: Application to the Planck HFI Maps

NASA Astrophysics Data System (ADS)

Meisner, Aaron M.; Finkbeiner, Douglas P.

2014-06-01

We present full-sky, 6.1 arcminute resolution maps of dust optical depth and temperature derived by fitting the Finkbeiner et al. (1999) two-component dust emission model to the Planck HFI and IRAS 100 micron maps. This parametrization of the far infrared thermal dust SED as the sum of two modified blackbodies serves as an important alternative to the commonly adopted single modified blackbody dust emission model. We expect our Planck-based maps of dust temperature and optical depth to form the basis for a next-generation, high-resolution extinction map which will additionally incorporate small-scale detail from WISE imaging.

Wide-Bandwidth, Wide-Beamwidth, High-Resolution, Millimeter-Wave Imaging for Concealed Weapon Detection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sheen, David M.; Fernandes, Justin L.; Tedeschi, Jonathan R.

2013-06-12

Active millimeter-wave imaging is currently being used for personnel screening at airports and other high-security facilities. The lateral resolution, depth resolution, clothing penetration, and image illumination quality obtained from next-generation systems can be significantly enhanced through the selection the aperture size, antenna beamwidth, center frequency, and bandwidth. In this paper, the results of an extensive imaging trade study are presented using both planar and cylindrical three-dimensional imaging techniques at frequency ranges of 10-20 GHz, 10 – 40 GHz, 40 – 60 GHz, and 75 – 105 GHz

Wavelength scanning digital interference holography for high-resolution ophthalmic imaging

NASA Astrophysics Data System (ADS)

Potcoava, Mariana C.; Kim, M. K.; Kay, Christine N.

2009-02-01

An improved digital interference holography (DIH) technique suitable for fundus images is proposed. This technique incorporates a dispersion compensation algorithm to compensate for the unknown axial length of the eye. Using this instrument we acquired successfully tomographic fundus images in human eye with narrow axial resolution less than 5μm. The optic nerve head together with the surrounding retinal vasculature were constructed. We were able to quantify a depth of 84μm between the retinal fiber and the retinal pigmented epithelium layers. DIH provides high resolution 3D information which could potentially aid in guiding glaucoma diagnosis and treatment.

In vivo high-resolution cortical imaging with extended-focus optical coherence microscopy in the visible-NIR wavelength range

NASA Astrophysics Data System (ADS)

Marchand, Paul J.; Szlag, Daniel; Bouwens, Arno; Lasser, Theo

2018-03-01

Visible light optical coherence tomography has shown great interest in recent years for spectroscopic and high-resolution retinal and cerebral imaging. Here, we present an extended-focus optical coherence microscopy system operating from the visible to the near-infrared wavelength range for high axial and lateral resolution imaging of cortical structures in vivo. The system exploits an ultrabroad illumination spectrum centered in the visible wavelength range (λc = 650 nm, Δλ ˜ 250 nm) offering a submicron axial resolution (˜0.85 μm in water) and an extended-focus configuration providing a high lateral resolution of ˜1.4 μm maintained over ˜150 μm in depth in water. The system's axial and lateral resolution are first characterized using phantoms, and its imaging performance is then demonstrated by imaging the vasculature, myelinated axons, and neuronal cells in the first layers of the somatosensory cortex of mice in vivo.

High resolution SAW elastography for ex-vivo porcine skin specimen

NASA Astrophysics Data System (ADS)

Zhou, Kanheng; Feng, Kairui; Wang, Mingkai; Jamera, Tanatswa; Li, Chunhui; Huang, Zhihong

2018-02-01

Surface acoustic wave (SAW) elastography has been proven to be a non-invasive, non-destructive method for accurately characterizing tissue elastic properties. Current SAW elastography technique tracks generated surface acoustic wave impulse point by point which are a few millimeters away. Thus, reconstructed elastography has low lateral resolution. To improve the lateral resolution of current SAW elastography, a new method was proposed in this research. A M-B scan mode, high spatial resolution phase sensitive optical coherence tomography (PhS-OCT) system was employed to track the ultrasonically induced SAW impulse. Ex-vivo porcine skin specimen was tested using this proposed method. A 2D fast Fourier transform based algorithm was applied to process the acquired data for estimating the surface acoustic wave dispersion curve and its corresponding penetration depth. Then, the ex-vivo porcine skin elastogram was established by relating the surface acoustic wave dispersion curve and its corresponding penetration depth. The result from the proposed method shows higher lateral resolution than that from current SAW elastography technique, and the approximated skin elastogram could also distinguish the different layers in the skin specimen, i.e. epidermis, dermis and fat layer. This proposed SAW elastography technique may have a large potential to be widely applied in clinical use for skin disease diagnosis and treatment monitoring.

ConvPhot: A profile-matching algorithm for precision photometry

NASA Astrophysics Data System (ADS)

De Santis, C.; Grazian, A.; Fontana, A.; Santini, P.

2007-02-01

We describe in this paper a new, public software for accurate "PSF-matched" multiband photometry for images of different resolution and depth, that we have named ConvPhot, of which we analyse performances and limitations. It is designed to work when a high resolution image is available to identify and extract the objects, and colours or variations in luminosity are to be measured in another image of lower resolution but comparable depth. To maximise the usability of this software, we explicitly use the outputs of the popular SExtractor code that is used to extract all objects from the high resolution "detection" image. The technique adopted by the code is essentially to convolve each object to the PSF of the lower resolution "measure" image, and to obtain the flux of each object by a global χ2 minimisation on such measure image. We remark that no a priori assumption is done on the shape of the objects. In this paper we provide a full description of the algorithm, a discussion of the possible systematic effects involved and the results of a set of simulations and validation tests that we have performed on real as well as simulated images. The source code of ConvPhot, written in C language under the GNU Public License, is released worldwide.

Extended depth of field imaging for high speed object analysis

NASA Technical Reports Server (NTRS)

Frost, Keith (Inventor); Ortyn, William (Inventor); Basiji, David (Inventor); Bauer, Richard (Inventor); Liang, Luchuan (Inventor); Hall, Brian (Inventor); Perry, David (Inventor)

2011-01-01

A high speed, high-resolution flow imaging system is modified to achieve extended depth of field imaging. An optical distortion element is introduced into the flow imaging system. Light from an object, such as a cell, is distorted by the distortion element, such that a point spread function (PSF) of the imaging system is invariant across an extended depth of field. The distorted light is spectrally dispersed, and the dispersed light is used to simultaneously generate a plurality of images. The images are detected, and image processing is used to enhance the detected images by compensating for the distortion, to achieve extended depth of field images of the object. The post image processing preferably involves de-convolution, and requires knowledge of the PSF of the imaging system, as modified by the optical distortion element.

Generalized Nonlinear Chirp Scaling Algorithm for High-Resolution Highly Squint SAR Imaging

PubMed Central

He, Zhihua; He, Feng; Dong, Zhen; Wu, Manqing

2017-01-01

This paper presents a modified approach for high-resolution, highly squint synthetic aperture radar (SAR) data processing. Several nonlinear chirp scaling (NLCS) algorithms have been proposed to solve the azimuth variance of the frequency modulation rates that are caused by the linear range walk correction (LRWC). However, the azimuth depth of focusing (ADOF) is not handled well by these algorithms. The generalized nonlinear chirp scaling (GNLCS) algorithm that is proposed in this paper uses the method of series reverse (MSR) to improve the ADOF and focusing precision. It also introduces a high order processing kernel to avoid the range block processing. Simulation results show that the GNLCS algorithm can enlarge the ADOF and focusing precision for high-resolution highly squint SAR data. PMID:29112151

Seismic Study of the Subsurface Structure and Dynamics of the Solar Interior from High Spatial Resolution Observations

NASA Technical Reports Server (NTRS)

Korzennik, Sylvain G.

1997-01-01

We have carried out the data reduction and analysis of Mt. Wilson 60' solar tower high spatial resolution observations. The reduction of the 100-day-long summer of 1990 observation campaign in terms of rotational splittings was completed leading to an excess of 600,000 splittings. The analysis of these splittings lead to a new inference of the solar internal rotation rate as a function of depth and latitude.

Investigation of Panchromatic Satellite Imagery Sensor Low Bias in Shadow Method Aerosol Optical Depth Retrieval

DTIC Science & Technology

2009-03-01

value. While these instruments may be well suited for academic research, they are generally not useful for battlefield measurements. Airborne and...may be too generalized for use with current tactical decision aids in the high-resolution, high- precision environment of the modern battlefield...imager resolutions on the order of less than 1 meter, shadows from small features such as buildings can be used to effectively measure the AOD in the

Depth resolution and preferential sputtering in depth profiling of sharp interfaces

NASA Astrophysics Data System (ADS)

Hofmann, S.; Han, Y. S.; Wang, J. Y.

2017-07-01

The influence of preferential sputtering on depth resolution of sputter depth profiles is studied for different sputtering rates of the two components at an A/B interface. Surface concentration and intensity depth profiles on both the sputtering time scale (as measured) and the depth scale are obtained by calculations with an extended Mixing-Roughness-Information depth (MRI)-model. The results show a clear difference for the two extreme cases (a) preponderant roughness and (b) preponderant atomic mixing. In case (a), the interface width on the time scale (Δt(16-84%)) increases with preferential sputtering if the faster sputtering component is on top of the slower sputtering component, but the true resolution on the depth scale (Δz(16-84%)) stays constant. In case (b), the interface width on the time scale stays constant but the true resolution on the depth scale varies with preferential sputtering. For similar order of magnitude of the atomic mixing and the roughness parameters, a transition state between the two extremes is obtained. While the normalized intensity profile of SIMS represents that of the surface concentration, an additional broadening effect is encountered in XPS or AES by the influence of the mean electron escape depth which may even cause an additional matrix effect at the interface.

Long range surface plasmon resonance with ultra-high penetration depth for self-referenced sensing and ultra-low detection limit using diverging beam approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Isaacs, Sivan, E-mail: sivan.isaacs@gmail.com; Abdulhalim, Ibrahim; NEW CREATE Programme, School of Materials Science and Engineering, 1 CREATE Way, Research Wing, #02-06/08, Singapore 138602

2015-05-11

Using an insulator-metal-insulator structure with dielectric having refractive index (RI) larger than the analyte, long range surface plasmon (SP) resonance exhibiting ultra-high penetration depth is demonstrated for sensing applications of large bioentities at wavelengths in the visible range. Based on the diverging beam approach in Kretschmann-Raether configuration, one of the SP resonances is shown to shift in response to changes in the analyte RI while the other is fixed; thus, it can be used as a built in reference. The combination of the high sensitivity, high penetration depth and self-reference using the diverging beam approach in which a dark linemore » is detected of the high sensitivity, high penetration depth, self-reference, and the diverging beam approach in which a dark line is detected using large number of camera pixels with a smart algorithm for sub-pixel resolution, a sensor with ultra-low detection limit is demonstrated suitable for large bioentities.« less

X-ray microtomography and laser ablation in the analysis of ink distribution in coated paper

DOE Office of Scientific and Technical Information (OSTI.GOV)

Myllys, M., E-mail: markko.myllys@jyu.fi; Häkkänen, H.; Korppi-Tommola, J.

A novel method was developed for studying the ink-paper interface and the structural variations of a deposited layer of ink. Combining high-resolution x-ray tomography with laser ablation, the depth profile of ink (toner), i.e., its varying thickness, could be determined in a paper substrate. X-ray tomography was used to produce the 3D structure of paper with about 1 μm spatial resolution. Laser ablation combined with optical imaging was used to produce the 3D structure of the printed layer of ink on top of that paper with about 70 nm depth resolution. Ablation depth was calibrated with an optical profilometer. It can bemore » concluded that a toner layer on a light-weight-coated paper substrate was strongly perturbed by protruding fibers of the base paper. Such fibers together with the surface topography of the base paper seem to be the major factors that control the leveling of toner and its penetration into a thinly coated paper substrate.« less

Re-examining data-intensive surface water models with high-resolution topography derived from unmanned aerial system photogrammetry

NASA Astrophysics Data System (ADS)

Pai, H.; Tyler, S.

2017-12-01

Small, unmanned aerial systems (sUAS) are quickly becoming a cost-effective and easily deployable tool for high spatial resolution environmental sensing. Land surface studies from sUAS imagery have largely focused on accurate topographic mapping, quantifying geomorphologic changes, and classification/identification of vegetation, sediment, and water quality tracers. In this work, we explore a further application of sUAS-derived topographic mapping to a two-dimensional (2-d), depth-averaged river hydraulic model (Flow and Sediment Transport with Morphological Evolution of Channels, FaSTMECH) along a short, meandering reach of East River, Colorado. On August 8, 2016, we flew a sUAS as part of the Center for Transformative Environmental Monitoring Programs with a consumer-grade visible camera and created a digital elevation map ( 1.5 cm resolution; 5 cm accuracy; 500 m long river corridor) with Agisoft Photoscan software. With the elevation map, we created a longitudinal water surface elevation (WSE) profile by manually delineating the bank-water interface and river bathymetry by applying refraction corrections for more accurate water depth estimates, an area of ongoing research for shallow and clear river systems. We tested both uncorrected and refraction-corrected bathymetries with the steady-state, 2-d model, applying sensitivities for dissipation parameters (bed roughness and eddy characteristics). Model performance was judged from the WSE data and measured stream velocities. While the models converged, performance and insights from model output could be improved with better bed roughness characterization and additional water depth cross-validation for refraction corrections. Overall, this work shows the applicability of sUAS-derived products to a multidimensional river model, where bathymetric data of high resolution and accuracy are key model input requirements.

Evaluation of the dosimetric properties of a diode detector for small field proton radiosurgery.

PubMed

McAuley, Grant A; Teran, Anthony V; Slater, Jerry D; Slater, James M; Wroe, Andrew J

2015-11-08

The small fields and sharp gradients typically encountered in proton radiosurgery require high spatial resolution dosimetric measurements, especially below 1-2 cm diameters. Radiochromic film provides high resolution, but requires postprocessing and special handling. Promising alternatives are diode detectors with small sensitive volumes (SV) that are capable of high resolution and real-time dose acquisition. In this study we evaluated the PTW PR60020 proton dosimetry diode using radiation fields and beam energies relevant to radiosurgery applications. Energies of 127 and 157 MeV (9.7 to 15 cm range) and initial diameters of 8, 10, 12, and 20mm were delivered using single-stage scattering and four modulations (0, 15, 30, and 60mm) to a water tank in our treatment room. Depth dose and beam profile data were compared with PTW Markus N23343 ionization chamber, EBT2 Gafchromic film, and Monte Carlo simulations. Transverse dose profiles were measured using the diode in "edge-on" orientation or EBT2 film. Diode response was linear with respect to dose, uniform with dose rate, and showed an orientation-dependent (i.e., beam parallel to, or perpendicular to, detector axis) response of less than 1%. Diodevs. Markus depth-dose profiles, as well as Markus relative dose ratio vs. simulated dose-weighted average lineal energy plots, suggest that any LET-dependent diode response is negligible from particle entrance up to the very distal portion of the SOBP for the energies tested. Finally, while not possible with the ionization chamber due to partial volume effects, accurate diode depth-dose measurements of 8, 10, and 12 mm diameter beams were obtained compared to Monte Carlo simulations. Because of the small SV that allows measurements without partial volume effects and the capability of submillimeter resolution (in edge-on orientation) that is crucial for small fields and high-dose gradients (e.g., penumbra, distal edge), as well as negligible LET dependence over nearly the full the SOBP, the PTW proton diode proved to be a useful high-resolution, real-time metrology device for small proton field radiation measurements such as would be encountered in radiosurgery applications.

Exploring proximity effects and large depth of field in helium ion beam lithography: large-area dense patterns and tilted surface exposure.

PubMed

Flatabø, Ranveig; Agarwal, Akshay; Hobbs, Richard; Greve, Martin M; Holst, Bodil; Berggren, Karl K

2018-07-06

Helium ion beam lithography (HIL) is an emerging nanofabrication technique. It benefits from a reduced interaction volume compared to that of an electron beam of similar energy, and hence reduced long-range scattering (proximity effect), higher resist sensitivity and potentially higher resolution. Furthermore, the small angular spread of the helium ion beam gives rise to a large depth of field. This should enable patterning on tilted and curved surfaces without the need of any additional adjustments, such as laser-auto focus. So far, most work on HIL has been focused on exploiting the reduced proximity effect to reach single-digit nanometer resolution, and has thus been concentrated on single-pixel exposures over small areas. Here we explore two new areas of application. Firstly, we investigate the proximity effect in large-area exposures and demonstrate HIL's capabilities in fabricating precise high-density gratings on large planar surfaces (100 μm × 100 μm, with pitch down to 35 nm) using an area dose for exposure. Secondly, we exploit the large depth of field by making the first HIL patterns on tilted surfaces (sample stage tilted 45°). We demonstrate a depth of field greater than 100 μm for a resolution of about 20 nm.

Feasibility of high resolution seismic reflection to improve accuracy of hydrogeologic models in a culturally noisy part of Ventura County, CA, USA

USGS Publications Warehouse

Miller, R.; Black, W.; Miele, M.; Morgan, T.; Ivanov, J.; Xia, J.; Peterie, S.

2011-01-01

A high-resolution seismic reflection investigation mapped reflectors and identified characteristics potentially influencing the interpretation of the hydrogeology underlying a portion of the Oxnard Plain in Ventura County, California. Design and implementation of this study was heavily influenced by high levels of cultural noise from vehicles, power lines, roads, manufacturing facilities, and underground utilities/vaults. Acquisition and processing flows were tailored to this noisy environment and relatively shallow target interval. Layering within both upper and lower aquifer systems was delineated at a vertical resolution potential of around 2.5 m at 350 m depth. ?? 2011 Society of Exploration Geophysicists.

Enhancing sensitivity of high resolution optical coherence tomography using an optional spectrally encoded extended source (Conference Presentation)

NASA Astrophysics Data System (ADS)

Yu, Xiaojun; Liu, Xinyu; Chen, Si; Wang, Xianghong; Liu, Linbo

2016-03-01

High-resolution optical coherence tomography (OCT) is of critical importance to disease diagnosis because it is capable of providing detailed microstructural information of the biological tissues. However, a compromise usually has to be made between its spatial resolutions and sensitivity due to the suboptimal spectral response of the system components, such as the linear camera, the dispersion grating, and the focusing lenses, etc. In this study, we demonstrate an OCT system that achieves both high spatial resolutions and enhanced sensitivity through utilizing a spectrally encoded source. The system achieves a lateral resolution of 3.1 μm and an axial resolution of 2.3 μm in air; when with a simple dispersive prism placed in the infinity space of the sample arm optics, the illumination beam on the sample is transformed into a line source with a visual angle of 10.3 mrad. Such an extended source technique allows a ~4 times larger maximum permissible exposure (MPE) than its point source counterpart, which thus improves the system sensitivity by ~6dB. In addition, the dispersive prism can be conveniently switched to a reflector. Such flexibility helps increase the penetration depth of the system without increasing the complexity of the current point source devices. We conducted experiments to characterize the system's imaging capability using the human fingertip in vivo and the swine eye optic never disc ex vivo. The higher penetration depth of such a system over the conventional point source OCT system is also demonstrated in these two tissues.

Attenuation tomography of the main volcanic regions of the Campanian Plain.

NASA Astrophysics Data System (ADS)

de Siena, Luca; Del Pezzo, Edoardo; Bianco, Francesca

2010-05-01

Passive, high resolution attenuation tomography is used to image the geological structure in the first upper 4 km of shallow crust beneath the Campanian Plain. Images were produced by two separate attenuation tomography studies of the main volcanic regions of the Campanian Plain, Southern Italy, Mt. Vesuvius volcano and Campi Flegrei caldera. The three-dimensional S wave attenuation tomography of Mt. Vesuvius has been obtained with multiple measurements of coda-normalized S-wave spectra of local small magnitude earthquakes. P-wave attenuation tomography was performed using classical spectral methods. The images were obtained inverting the spectral data with a multiple resolution approach expressively designed for attenuation tomography. This allowed to obtain a robust attenuation image of the volumes under the central cone at a maximum resolution of 300 m. The same approach was applied to a data set recorded in the Campi Flegrei area during the 1982-1984 seismic crisis. Inversion ensures a minimum cell size resolution of 500 meters in the zones with sufficient ray coverage, and 1000 meters outside these zones. The study of the resolution matrix as well as the synthetic tests guarantee an optimal reproduction of the input anomalies in the center of the caldera, between 0 and 3.5 km in depth. Results allowed an unprecedented view of several features of the medium, like the residual part of solidified magma from the last eruption, under the central cone of Mt. Vesuvius, and the feeding systems and top of the carbonate basement, 3 km depth below both volcanic areas. Vertical Q contrast image important fault zones, such as the La Starza fault, as well as high attenuation structures that correspond to gas or fluid reservoirs, and reveal the upper part of gas bearing conduits connecting these high attenuation volumes with the magma sill revealed at about 7 km in depth by passive travel-time tomography under the whole Campanian Plain.

Assimilation and High Resolution Forecasts of Surface and Near Surface Conditions for the 2010 Vancouver Winter Olympic and Paralympic Games

NASA Astrophysics Data System (ADS)

Bernier, Natacha B.; Bélair, Stéphane; Bilodeau, Bernard; Tong, Linying

2014-01-01

A dynamical model was experimentally implemented to provide high resolution forecasts at points of interests in the 2010 Vancouver Olympics and Paralympics Region. In a first experiment, GEM-Surf, the near surface and land surface modeling system, is driven by operational atmospheric forecasts and used to refine the surface forecasts according to local surface conditions such as elevation and vegetation type. In this simple form, temperature and snow depth forecasts are improved mainly as a result of the better representation of real elevation. In a second experiment, screen level observations and operational atmospheric forecasts are blended to drive a continuous cycle of near surface and land surface hindcasts. Hindcasts of the previous day conditions are then regarded as today's optimized initial conditions. Hence, in this experiment, given observations are available, observation driven hindcasts continuously ensure that daily forecasts are issued from improved initial conditions. GEM-Surf forecasts obtained from improved short-range hindcasts produced using these better conditions result in improved snow depth forecasts. In a third experiment, assimilation of snow depth data is applied to further optimize GEM-Surf's initial conditions, in addition to the use of blended observations and forecasts for forcing. Results show that snow depth and summer temperature forecasts are further improved by the addition of snow depth data assimilation.

A 5mm catheter for constant resolution probing in Fourier domain optical coherence endoscopy

NASA Astrophysics Data System (ADS)

Lee, Kye-Sung; Wu, Lei; Xie, Huikai; Ilegbusi, Olusegun; Costa, Marco; Rolland, Jannick P.

2007-02-01

A 5mm biophotonic catheter was conceived for optical coherence tomography (OCT) with collimation optics, an axicon lens, and custom design imaging optics, yielding a 360 degree scan aimed at imaging within concave structures such as lung lobes. In OCT a large depth of focus is necessary to image a thick sample with a constant high transverse resolution. There are two approaches to achieving constant lateral resolution in OCT: Dynamic focusing or Bessel beam forming. This paper focuses on imaging with Bessel beams. A Bessel beam can be generated in the sample arm of the OCT interferometer when axicon optics is employed instead of a conventional focusing lens. We present a design for a 5mm catheter that combines an axicon lens with imaging optics and the coupling of a MEMS mirror attached to a micromotor that allow 360 degree scanning with a resolution of about 5 microns across a depth of focus of about 1.2mm.

Optical coherence tomography for embryonic imaging: a review

PubMed Central

Raghunathan, Raksha; Singh, Manmohan; Dickinson, Mary E.; Larin, Kirill V.

2016-01-01

Abstract. Embryogenesis is a highly complex and dynamic process, and its visualization is crucial for understanding basic physiological processes during development and for identifying and assessing possible defects, malformations, and diseases. While traditional imaging modalities, such as ultrasound biomicroscopy, micro-magnetic resonance imaging, and micro-computed tomography, have long been adapted for embryonic imaging, these techniques generally have limitations in their speed, spatial resolution, and contrast to capture processes such as cardiodynamics during embryogenesis. Optical coherence tomography (OCT) is a noninvasive imaging modality with micrometer-scale spatial resolution and imaging depth up to a few millimeters in tissue. OCT has bridged the gap between ultrahigh resolution imaging techniques with limited imaging depth like confocal microscopy and modalities, such as ultrasound sonography, which have deeper penetration but poorer spatial resolution. Moreover, the noninvasive nature of OCT has enabled live imaging of embryos without any external contrast agents. We review how OCT has been utilized to study developing embryos and also discuss advances in techniques used in conjunction with OCT to understand embryonic development. PMID:27228503

Study on super-resolution three-dimensional range-gated imaging technology

NASA Astrophysics Data System (ADS)

Guo, Huichao; Sun, Huayan; Wang, Shuai; Fan, Youchen; Li, Yuanmiao

2018-04-01

Range-gated three dimensional imaging technology is a hotspot in recent years, because of the advantages of high spatial resolution, high range accuracy, long range, and simultaneous reflection of target reflectivity information. Based on the study of the principle of intensity-related method, this paper has carried out theoretical analysis and experimental research. The experimental system adopts the high power pulsed semiconductor laser as light source, gated ICCD as the imaging device, can realize the imaging depth and distance flexible adjustment to achieve different work mode. The imaging experiment of small imaging depth is carried out aiming at building 500m away, and 26 group images were obtained with distance step 1.5m. In this paper, the calculation method of 3D point cloud based on triangle method is analyzed, and 15m depth slice of the target 3D point cloud are obtained by using two frame images, the distance precision is better than 0.5m. The influence of signal to noise ratio, illumination uniformity and image brightness on distance accuracy are analyzed. Based on the comparison with the time-slicing method, a method for improving the linearity of point cloud is proposed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scaduto, DA; Hu, Y-H; Zhao, W

Purpose: Spatial resolution in digital breast tomosynthesis (DBT) is affected by inherent/binned detector resolution, oblique entry of x-rays, and focal spot size/motion; the limited angular range further limits spatial resolution in the depth-direction. While DBT is being widely adopted clinically, imaging performance metrics and quality control protocols have not been standardized. AAPM Task Group 245 on Tomosynthesis Quality Control has been formed to address this deficiency. Methods: Methods of measuring spatial resolution are evaluated using two prototype quality control phantoms for DBT. Spatial resolution in the detector plane is measured in projection and reconstruction domains using edge-spread function (ESF), point-spreadmore » function (PSF) and modulation transfer function (MTF). Spatial resolution in the depth-direction and effective slice thickness are measured in the reconstruction domain using slice sensitivity profile (SSP) and artifact spread function (ASF). An oversampled PSF in the depth-direction is measured using a 50 µm angulated tungsten wire, from which the MTF is computed. Object-dependent PSF is derived and compared with ASF. Sensitivity of these measurements to phantom positioning, imaging conditions and reconstruction algorithms is evaluated. Results are compared from systems of varying acquisition geometry (9–25 projections over 15–60°). Dependence of measurements on feature size is investigated. Results: Measurements of spatial resolution using PSF and LSF are shown to depend on feature size; depth-direction spatial resolution measurements are shown to similarly depend on feature size for ASF, though deconvolution with an object function removes feature size-dependence. A slanted wire may be used to measure oversampled PSFs, from which MTFs may be computed for both in-plane and depth-direction resolution. Conclusion: Spatial resolution measured using PSF is object-independent with sufficiently small object; MTF is object-independent. Depth-direction spatial resolution may be measured directly using MTF or indirectly using ASF or SSP as surrogate measurements. While MTF is object-independent, it is invalid for nonlinear reconstructions.« less

Improved high-resolution ultrasonic imaging of the eye.

PubMed

Silverman, Ronald H; Ketterling, Jeffrey A; Mamou, Jonathan; Coleman, D Jackson

2008-01-01

Currently, virtually all clinical diagnostic ultrasound systems used in ophthalmology are based on fixed-focus, single-element transducers. High-frequency (> or = 20-MHz) transducers introduced to ophthalmology during the last decade have led to improved resolution and diagnostic capabilities for assessment of the anterior segment and the retina. However, single-element transducers are restricted to a small depth of field, limiting their capacity to image the eye as a whole. We fabricated a 20-MHz annular array probe prototype consisting of 5 concentric transducer elements and scanned an ex vivo human eye. Synthetically focused images of the bank eye showed improved depth of field and sensitivity, allowing simultaneous display of the anterior and posterior segments and the full lens contour. This capability may be useful in assessment of vitreoretinal pathologies and investigation of the accommodative mechanism.

Long-range and depth-selective imaging of macroscopic targets using low-coherence and wide-field interferometry (Conference Presentation)

NASA Astrophysics Data System (ADS)

Woo, Sungsoo; Kang, Sungsam; Yoon, Changhyeong; Choi, Wonshik

2016-03-01

With the advancement of 3D display technology, 3D imaging of macroscopic objects has drawn much attention as they provide the contents to display. The most widely used imaging methods include a depth camera, which measures time of flight for the depth discrimination, and various structured illumination techniques. However, these existing methods have poor depth resolution, which makes imaging complicated structures a difficult task. In order to resolve this issue, we propose an imaging system based upon low-coherence interferometry and off-axis digital holographic imaging. By using light source with coherence length of 200 micro, we achieved the depth resolution of 100 micro. In order to map the macroscopic objects with this high axial resolution, we installed a pair of prisms in the reference beam path for the long-range scanning of the optical path length. Specifically, one prism was fixed in position, and the other prism was mounted on a translation stage and translated in parallel to the first prism. Due to the multiple internal reflections between the two prisms, the overall path length was elongated by a factor of 50. In this way, we could cover a depth range more than 1 meter. In addition, we employed multiple speckle illuminations and incoherent averaging of the acquired holographic images for reducing the specular reflections from the target surface. Using this newly developed system, we performed imaging targets with multiple different layers and demonstrated imaging targets hidden behind the scattering layers. The method was also applied to imaging targets located around the corner.

Using basic metrics to analyze high-resolution temperature data in the subsurface

NASA Astrophysics Data System (ADS)

Shanafield, Margaret; McCallum, James L.; Cook, Peter G.; Noorduijn, Saskia

2017-08-01

Time-series temperature data can be summarized to provide valuable information on spatial variation in subsurface flow, using simple metrics. Such computationally light analysis is often discounted in favor of more complex models. However, this study demonstrates the merits of summarizing high-resolution temperature data, obtained from a fiber optic cable installation at several depths within a water delivery channel, into daily amplitudes and mean temperatures. These results are compared to fluid flux estimates from a one-dimensional (1D) advection-conduction model and to the results of a previous study that used a full three-dimensional (3D) model. At a depth of 0.1 m below the channel, plots of amplitude suggested areas of advective water movement (as confirmed by the 1D and 3D models). Due to lack of diurnal signal at depths below 0.1 m, mean temperature was better able to identify probable areas of water movement at depths of 0.25-0.5 m below the channel. The high density of measurements provided a 3D picture of temperature change over time within the study reach, and would be suitable for long-term monitoring in man-made environments such as constructed wetlands, recharge basins, and water-delivery channels, where a firm understanding of spatial and temporal variation in infiltration is imperative for optimal functioning.

A Three-Dimensional Target Depth-Resolution Method with a Single-Vector Sensor

PubMed Central

Zhao, Anbang; Bi, Xuejie; Hui, Juan; Zeng, Caigao; Ma, Lin

2018-01-01

This paper mainly studies and verifies the target number category-resolution method in multi-target cases and the target depth-resolution method of aerial targets. Firstly, target depth resolution is performed by using the sign distribution of the reactive component of the vertical complex acoustic intensity; the target category and the number resolution in multi-target cases is realized with a combination of the bearing-time recording information; and the corresponding simulation verification is carried out. The algorithm proposed in this paper can distinguish between the single-target multi-line spectrum case and the multi-target multi-line spectrum case. This paper presents an improved azimuth-estimation method for multi-target cases, which makes the estimation results more accurate. Using the Monte Carlo simulation, the feasibility of the proposed target number and category-resolution algorithm in multi-target cases is verified. In addition, by studying the field characteristics of the aerial and surface targets, the simulation results verify that there is only amplitude difference between the aerial target field and the surface target field under the same environmental parameters, and an aerial target can be treated as a special case of a surface target; the aerial target category resolution can then be realized based on the sign distribution of the reactive component of the vertical acoustic intensity so as to realize three-dimensional target depth resolution. By processing data from a sea experiment, the feasibility of the proposed aerial target three-dimensional depth-resolution algorithm is verified. PMID:29649173

A Three-Dimensional Target Depth-Resolution Method with a Single-Vector Sensor.

PubMed

Zhao, Anbang; Bi, Xuejie; Hui, Juan; Zeng, Caigao; Ma, Lin

2018-04-12

This paper mainly studies and verifies the target number category-resolution method in multi-target cases and the target depth-resolution method of aerial targets. Firstly, target depth resolution is performed by using the sign distribution of the reactive component of the vertical complex acoustic intensity; the target category and the number resolution in multi-target cases is realized with a combination of the bearing-time recording information; and the corresponding simulation verification is carried out. The algorithm proposed in this paper can distinguish between the single-target multi-line spectrum case and the multi-target multi-line spectrum case. This paper presents an improved azimuth-estimation method for multi-target cases, which makes the estimation results more accurate. Using the Monte Carlo simulation, the feasibility of the proposed target number and category-resolution algorithm in multi-target cases is verified. In addition, by studying the field characteristics of the aerial and surface targets, the simulation results verify that there is only amplitude difference between the aerial target field and the surface target field under the same environmental parameters, and an aerial target can be treated as a special case of a surface target; the aerial target category resolution can then be realized based on the sign distribution of the reactive component of the vertical acoustic intensity so as to realize three-dimensional target depth resolution. By processing data from a sea experiment, the feasibility of the proposed aerial target three-dimensional depth-resolution algorithm is verified.

Time multiplexing based extended depth of focus imaging.

PubMed

Ilovitsh, Asaf; Zalevsky, Zeev

2016-01-01

We propose to utilize the time multiplexing super resolution method to extend the depth of focus of an imaging system. In standard time multiplexing, the super resolution is achieved by generating duplication of the optical transfer function in the spectrum domain, by the use of moving gratings. While this improves the spatial resolution, it does not increase the depth of focus. By changing the gratings frequency and, by that changing the duplication positions, it is possible to obtain an extended depth of focus. The proposed method is presented analytically, demonstrated via numerical simulations and validated by a laboratory experiment.

Whole-animal imaging with high spatio-temporal resolution

NASA Astrophysics Data System (ADS)

Chhetri, Raghav; Amat, Fernando; Wan, Yinan; Höckendorf, Burkhard; Lemon, William C.; Keller, Philipp J.

2016-03-01

We developed isotropic multiview (IsoView) light-sheet microscopy in order to image fast cellular dynamics, such as cell movements in an entire developing embryo or neuronal activity throughput an entire brain or nervous system, with high resolution in all dimensions, high imaging speeds, good physical coverage and low photo-damage. To achieve high temporal resolution and high spatial resolution at the same time, IsoView microscopy rapidly images large specimens via simultaneous light-sheet illumination and fluorescence detection along four orthogonal directions. In a post-processing step, these four views are then combined by means of high-throughput multiview deconvolution to yield images with a system resolution of ≤ 450 nm in all three dimensions. Using IsoView microscopy, we performed whole-animal functional imaging of Drosophila embryos and larvae at a spatial resolution of 1.1-2.5 μm and at a temporal resolution of 2 Hz for up to 9 hours. We also performed whole-brain functional imaging in larval zebrafish and multicolor imaging of fast cellular dynamics across entire, gastrulating Drosophila embryos with isotropic, sub-cellular resolution. Compared with conventional (spatially anisotropic) light-sheet microscopy, IsoView microscopy improves spatial resolution at least sevenfold and decreases resolution anisotropy at least threefold. Compared with existing high-resolution light-sheet techniques, such as lattice lightsheet microscopy or diSPIM, IsoView microscopy effectively doubles the penetration depth and provides subsecond temporal resolution for specimens 400-fold larger than could previously be imaged.

Piezoelectric Composite Micromachined Multifrequency Transducers for High-Resolution, High-Contrast Ultrasound Imaging for Improved Prostate Cancer Assessment

DTIC Science & Technology

2014-08-01

and in (b) a standard animal model of prostate cancer. In the preliminary in-vitro study , imaging resolution, contrast to tissue ratio, and lesion...detectability will be assessed relative to a Siemens EV- 8C4 transrectal ultrasound probe. In the in-vivo study , molecular imaging and microvascular...lesions will be imaged at several axial depths using our prototype array and the Siemens EV-8C4 clinical TRUS probe. A blinded reader study will be

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookupmore » table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation ( R 2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.« less

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

NASA Astrophysics Data System (ADS)

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.; Turner, David D.; Eloranta, Edwin W.

2017-06-01

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookup table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation (R2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21 µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

DOE PAGES

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.; ...

2017-06-09

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookupmore » table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation ( R 2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.« less

In vivo multiphoton imaging of a diverse array of fluorophores to investigate deep neurovascular structure

PubMed Central

Miller, David R.; Hassan, Ahmed M.; Jarrett, Jeremy W.; Medina, Flor A.; Perillo, Evan P.; Hagan, Kristen; Shams Kazmi, S. M.; Clark, Taylor A.; Sullender, Colin T.; Jones, Theresa A.; Zemelman, Boris V.; Dunn, Andrew K.

2017-01-01

We perform high-resolution, non-invasive, in vivo deep-tissue imaging of the mouse neocortex using multiphoton microscopy with a high repetition rate optical parametric amplifier laser source tunable between λ=1,100 and 1,400 nm. By combining the high repetition rate (511 kHz) and high pulse energy (400 nJ) of our amplifier laser system, we demonstrate imaging of vasculature labeled with Texas Red and Indocyanine Green, and neurons expressing tdTomato and yellow fluorescent protein. We measure the blood flow speed of a single capillary at a depth of 1.2 mm, and image vasculature to a depth of 1.53 mm with fine axial steps (5 μm) and reasonable acquisition times. The high image quality enabled analysis of vascular morphology at depths to 1.45 mm. PMID:28717582

A portable borehole temperature logging system using the four-wire resistance method

NASA Astrophysics Data System (ADS)

Erkan, Kamil; Akkoyunlu, Bülent; Balkan, Elif; Tayanç, Mete

2017-12-01

High-quality temperature-depth information from boreholes with a depth of 100 m or more is used in geothermal studies and in studies of climate change. Electrical wireline tools with thermistor sensors are capable of measuring borehole temperatures with millikelvin resolution. The use of a surface readout mode allows analysis of the thermally conductive state of a borehole, which is especially important for climatic and regional heat flow studies. In this study we describe the design of a portable temperature logging tool that uses the four-wire resistance measurement method. The four-wire method enables the elimination of cable resistance effects, thus allowing millikelvin resolution of temperature data at depth. A preliminary two-wire model of the system is also described. The portability of the tool enables one to collect data from boreholes down to 300 m, even in locations with limited accessibility.

A submersible digital in-line holographic microscope

NASA Astrophysics Data System (ADS)

Jericho, Manfred; Jericho, Stefan; Kreuzer, Hans Juergen; Garcia, Jeorge; Klages, Peter

Few instruments exist that can image microscopic marine organisms in their natural environment so that their locomotion mechanisms, feeding habits and interactions with surfaces, such as bio-fouling, can be investigated in situ. In conventional optical microscopy under conditions of high magnification, only objects confined to the narrow focal plane can be imaged and processes that involve translation of the object perpendicular to this plane are not accessible. To overcome this severe limitation of optical microscopy, we developed digital in-line holographic microscopy (DIHM) as a high-resolution tool for the tracking of organisms in three dimensions. We describe here the design and performance of a very simple submersible digital in-line holographic microscope (SDIHM) that can image organisms and their motion with micron resolution and that can be deployed from small vessels. Holograms and reconstructed images of several microscopic marine organisms were successfully obtained down to a depth of 20 m. The maximum depth was limited by the length of data transmission cables available at the time and operating depth in excess of 100 m are easily possible for the instrument.

Depth-resolved monitoring of analytes diffusion in ocular tissues

NASA Astrophysics Data System (ADS)

Larin, Kirill V.; Ghosn, Mohamad G.; Tuchin, Valery V.

2007-02-01

Optical coherence tomography (OCT) is a noninvasive imaging technique with high in-depth resolution. We employed OCT technique for monitoring and quantification of analyte and drug diffusion in cornea and sclera of rabbit eyes in vitro. Different analytes and drugs such as metronidazole, dexamethasone, ciprofloxacin, mannitol, and glucose solution were studied and whose permeability coefficients were calculated. Drug diffusion monitoring was performed as a function of time and as a function of depth. Obtained results suggest that OCT technique might be used for analyte diffusion studies in connective and epithelial tissues.

Bifocal computational near eye light field displays and Structure parameters determination scheme for bifocal computational display.

PubMed

Liu, Mali; Lu, Chihao; Li, Haifeng; Liu, Xu

2018-02-19

We propose a bifocal computational near eye light field display (bifocal computational display) and structure parameters determination scheme (SPDS) for bifocal computational display that achieves greater depth of field (DOF), high resolution, accommodation and compact form factor. Using a liquid varifocal lens, two single-focal computational light fields are superimposed to reconstruct a virtual object's light field by time multiplex and avoid the limitation on high refresh rate. By minimizing the deviation between reconstructed light field and original light field, we propose a determination framework to determine the structure parameters of bifocal computational light field display. When applied to different objective to SPDS, it can achieve high average resolution or uniform resolution display over scene depth range. To analyze the advantages and limitation of our proposed method, we have conducted simulations and constructed a simple prototype which comprises a liquid varifocal lens, dual-layer LCDs and a uniform backlight. The results of simulation and experiments with our method show that the proposed system can achieve expected performance well. Owing to the excellent performance of our system, we motivate bifocal computational display and SPDS to contribute to a daily-use and commercial virtual reality display.

High axial resolution imaging system for large volume tissues using combination of inclined selective plane illumination and mechanical sectioning

PubMed Central

Zhang, Qi; Yang, Xiong; Hu, Qinglei; Bai, Ke; Yin, Fangfang; Li, Ning; Gang, Yadong; Wang, Xiaojun; Zeng, Shaoqun

2017-01-01

To resolve fine structures of biological systems like neurons, it is required to realize microscopic imaging with sufficient spatial resolution in three dimensional systems. With regular optical imaging systems, high lateral resolution is accessible while high axial resolution is hard to achieve in a large volume. We introduce an imaging system for high 3D resolution fluorescence imaging of large volume tissues. Selective plane illumination was adopted to provide high axial resolution. A scientific CMOS working in sub-array mode kept the imaging area in the sample surface, which restrained the adverse effect of aberrations caused by inclined illumination. Plastic embedding and precise mechanical sectioning extended the axial range and eliminated distortion during the whole imaging process. The combination of these techniques enabled 3D high resolution imaging of large tissues. Fluorescent bead imaging showed resolutions of 0.59 μm, 0.47μm, and 0.59 μm in the x, y, and z directions, respectively. Data acquired from the volume sample of brain tissue demonstrated the applicability of this imaging system. Imaging of different depths showed uniform performance where details could be recognized in either the near-soma area or terminal area, and fine structures of neurons could be seen in both the xy and xz sections. PMID:29296503

Rules of Thumb for Depth of Investigation, Pseudo-Position and Resolution of the Electrical Resistivity Method from Analysis of the Moments of the Sensitivity Function for a Homogeneous Half-Space

NASA Astrophysics Data System (ADS)

Butler, S. L.

2017-12-01

The electrical resistivity method is now highly developed with 2D and even 3D surveys routinely performed and with available fast inversion software. However, rules of thumb, based on simple mathematical formulas, for important quantities like depth of investigation, horizontal position and resolution have not previously been available and would be useful for survey planning, preliminary interpretation and general education about the method. In this contribution, I will show that the sensitivity function for the resistivity method for a homogeneous half-space can be analyzed in terms of its first and second moments which yield simple mathematical formulas. The first moment gives the sensitivity-weighted center of an apparent resistivity measurement with the vertical center being an estimate of the depth of investigation. I will show that this depth of investigation estimate works at least as well as previous estimates based on the peak and median of the depth sensitivity function which must be calculated numerically for a general four electrode array. The vertical and horizontal first moments can also be used as pseudopositions when plotting 1, 2 and 3D pseudosections. The appropriate horizontal plotting point for a pseudosection was not previously obvious for nonsymmetric arrays. The second moments of the sensitivity function give estimates of the spatial extent of the region contributing to an apparent resistivity measurement and hence are measures of the resolution. These also have simple mathematical formulas.

Snow Depth Mapping at a Basin-Wide Scale in the Western Arctic Using UAS Technology

NASA Astrophysics Data System (ADS)

de Jong, T.; Marsh, P.; Mann, P.; Walker, B.

2015-12-01

Assessing snow depths across the Arctic has proven to be extremely difficult due to the variability of snow depths at scales from metres to 100's of metres. New Unmanned Aerial Systems (UAS) technology provides the possibility to obtain centimeter level resolution imagery (~3cm), and to create Digital Surface Models (DSM) based on the Structure from Motion method. However, there is an ongoing need to quantify the accuracy of this method over different terrain and vegetation types across the Arctic. In this study, we used a small UAS equipped with a high resolution RGB camera to create DSMs over a 1 km2 watershed in the western Canadian Arctic during snow (end of winter) and snow-free periods. To improve the image georeferencing, 15 Ground Control Points were marked across the watershed and incorporated into the DSM processing. The summer DSM was subtracted from the snowcovered DSM to deliver snow depth measurements across the entire watershed. These snow depth measurements were validated by over 2000 snow depth measurements. This technique has the potential to improve larger scale snow depth mapping across watersheds by providing snow depth measurements at a ~3 cm . The ability of mapping both shallow snow (less than 75cm) covering much of the basin and snow patches (up to 5 m in depth) that cover less than 10% of the basin, but contain a significant portion of total basin snowcover, is important for both water resource applications, as well as for testing snow models.

Snow Pattern Delineation, Scaling, Fidelity, and Landscape Factors

NASA Astrophysics Data System (ADS)

Hiemstra, C. A.; Wagner, A. M.; Deeb, E. J.; Morriss, B. F.; Sturm, M.

2014-12-01

In many snow-covered landscapes, snow tends to be shallow or deep in the same locations year after year. As snowmelt progresses in spring, areas of shallow snow become snow-free earlier than areas with deep snow. This pattern (Sturm and Wagner 2010) could likely be used to inform or improve modeled snow depth estimates where ground measurements are not collected; however, we must be certain of their utility before ingesting them into model calculations. Do patterns, as we detect them, have a relationship with earlier measured snow distributions? Second, are certain areas on the landscape likely to yield patterns that are influenced too highly by melting to be useful? Our Imnavait Creek Study Area (11 by 19 km) is on Alaska's North Slope, where we have examined a vast library of spring satellite imagery (ranging from mostly snow-covered to mostly snow-free). Landsat TM Imagery has been collected from the early 1980s-present, and the temporal and spatial resolution is roughly two weeks and 30 m, respectively. High resolution satellite imagery (WorldView 1, WorldView 2, IKONOS) has been obtained from 2010-2013 for the same area with almost daily- to monthly-temporal and at 2.5 m spatial resolutions, respectively. We found that there is a striking similarity among patterns from year to year across the span of decades and resolutions. However, the relationship of pattern with observed snow depths was strong in some areas and less clear in others. Overall, we suspect spatial scaling, spatial mismatch, sampling errors, and melt patterns explain most of the areas of pattern and depth disparity.

Characterizing Watersheds with Geophysical Methods: Some uses of GPR and EMI in Hydropedological Investigations.

NASA Astrophysics Data System (ADS)

Doolittle, J.; Lin, H.; Jenkinson, B.; Zhou, X.

2006-05-01

The USDA-NRCS and its cooperators use ground-penetrating radar (GPR) and electromagnetic induction (EMI) as rapid, noninvasive tools to support soil surveys at different scales and levels of resolution. The effective use of GPR is site-specific and generally restricted to soils having low electrical conductivity (e.g., soils with low clay and soluble salt contents). In suitable soils, GPR provides high resolution data, which are used to estimate depths to soil horizons and geologic layers that restrict, redirect, and/or concentrate the flow of water through landscapes. In areas of coarse-textured soils, GPR has been used to map spatiotemporal variations in water-table depths and local ground-water flow patterns. Compared with GPR, EMI can be effectively used across a broader spectrum of soils and spatial scales, but provides lower resolution of subsurface features. EMI is used to refine and improve soil maps prepared with traditional soil survey methods. Differences in apparent conductivity (ECa) are associated with different soils and soil properties (e.g., clay, moisture and soluble salt contents). Apparent conductivity maps provide an additional layer of information, which directs soil sampling, aids the identification and delineation of some soil polygons, and enhances the quality of soil maps. More recently, these tools were used to characterize the hydropedological character of a small, steeply sloping, forested watershed. Within the watershed, EMI was used to characterize the principal soil-landscape components, and GPR was used to provide high resolution data on soil depth and layering within colluvial deposits located in swales and depressional areas.

Two-photon high-resolution measurement of partial pressure of oxygen in cerebral vasculature and tissue.

PubMed

Sakadzić, Sava; Roussakis, Emmanuel; Yaseen, Mohammad A; Mandeville, Emiri T; Srinivasan, Vivek J; Arai, Ken; Ruvinskaya, Svetlana; Devor, Anna; Lo, Eng H; Vinogradov, Sergei A; Boas, David A

2010-09-01

Measurements of oxygen partial pressure (pO(2)) with high temporal and spatial resolution in three dimensions is crucial for understanding oxygen delivery and consumption in normal and diseased brain. Among existing pO(2) measurement methods, phosphorescence quenching is optimally suited for the task. However, previous attempts to couple phosphorescence with two-photon laser scanning microscopy have faced substantial difficulties because of extremely low two-photon absorption cross-sections of conventional phosphorescent probes. Here we report to our knowledge the first practical in vivo two-photon high-resolution pO(2) measurements in small rodents' cortical microvasculature and tissue, made possible by combining an optimized imaging system with a two-photon-enhanced phosphorescent nanoprobe. The method features a measurement depth of up to 250 microm, sub-second temporal resolution and requires low probe concentration. The properties of the probe allowed for direct high-resolution measurement of cortical extravascular (tissue) pO(2), opening many possibilities for functional metabolic brain studies.

Three-dimensional anterior segment imaging in patients with type 1 Boston Keratoprosthesis with switchable full depth range swept source optical coherence tomography

PubMed Central

Poddar, Raju; Cortés, Dennis E.; Werner, John S.; Mannis, Mark J.

2013-01-01

Abstract. A high-speed (100 kHz A-scans/s) complex conjugate resolved 1 μm swept source optical coherence tomography (SS-OCT) system using coherence revival of the light source is suitable for dense three-dimensional (3-D) imaging of the anterior segment. The short acquisition time helps to minimize the influence of motion artifacts. The extended depth range of the SS-OCT system allows topographic analysis of clinically relevant images of the entire depth of the anterior segment of the eye. Patients with the type 1 Boston Keratoprosthesis (KPro) require evaluation of the full anterior segment depth. Current commercially available OCT systems are not suitable for this application due to limited acquisition speed, resolution, and axial imaging range. Moreover, most commonly used research grade and some clinical OCT systems implement a commercially available SS (Axsun) that offers only 3.7 mm imaging range (in air) in its standard configuration. We describe implementation of a common swept laser with built-in k-clock to allow phase stable imaging in both low range and high range, 3.7 and 11.5 mm in air, respectively, without the need to build an external MZI k-clock. As a result, 3-D morphology of the KPro position with respect to the surrounding tissue could be investigated in vivo both at high resolution and with large depth range to achieve noninvasive and precise evaluation of success of the surgical procedure. PMID:23912759

In-situ tomographic observation of tissue surface during laser ablation

NASA Astrophysics Data System (ADS)

Haruna, Masamitsu; Konoshita, Ryuh; Ohmi, Masato; Kunizawa, Naomi; Miyachi, Mayumi

2001-07-01

In laser ablation of tissues, tomography of the tissue surface is necessary for measurement of the crater depth and observation of damage of the surrounding tissue. We demonstrate here OCT images of craters made by UV laser ablation of different tissues. The maximum depth of a crater is found among several OCT images, and then the ablation rate is determined. The conventional OCT of the spatial resolution of 15 μm was used in our experiment, but OCT of the resolution of the order of 1 μm is required because the ablation rate is usually a few microns per pulse. Such a high-resolution OCT is also demonstrated in this paper, where the light source is a halogen lamp. Combination of laser ablation and OCT will lead to in situ tomographic observation of tissue surface during laser ablation, which should allow us to develop new laser surgeries.

Creating a water depth map from Earth Observation-derived flood extent and topography data

NASA Astrophysics Data System (ADS)

Matgen, Patrick; Giustarini, Laura; Chini, Marco; Hostache, Renaud; Pelich, Ramona; Schlaffer, Stefan

2017-04-01

Enhanced methods for monitoring temporal and spatial variations of water depth in rivers and floodplains are very important in operational water management. Currently, variations of water elevation can be estimated indirectly at the land-water interface using sequences of satellite EO imagery in combination with topographic data. In recent years high-resolution digital elevation models (DEM) and satellite EO data have become more readily available at global scale. This study introduces an approach for efficiently converting remote sensing-derived flood extent maps into water depth maps using a floodplain's topography information. For this we make the assumption of uniform flow, that is the depth of flow with respect to the drainage network is considered to be the same at every section of the floodplain. In other words, the depth of water above the nearest drainage is expected to be constant for a given river reach. To determine this value we first need the Height Above Nearest Drainage (HAND) raster obtained by using the area of interest's DEM as source topography and a shapefile of the river network. The HAND model normalizes the topography with respect to the drainage network. Next, the HAND raster is thresholded in order to generate a binary mask that optimally fits, over the entire region of study, the flood extent map obtained from SAR or any other remote sensing product, including aerial photographs. The optimal threshold value corresponds to the height of the water line above the nearest drainage, termed HANDWATER, and is considered constant for a given subreach. Once the HANDWATER has been optimized, a water depth map can be generated by subtracting the value of the HAND raster at the each location from this parameter value. These developments enable large scale and near real-time applications and only require readily available EO data, a DEM and the river network as input data. The approach is based on a hierarchical split-based approach that subdivides a drainage network into segments of variable length with evidence of uniform flow. The method has been tested with remote sensing data and DEM data that differ in terms of spatial resolution and accuracy. A comprehensive evaluation of the obtained water depth maps with hydrodynamic modelling results and in situ measured water level recordings was carried out on a reach of the river Severn located in the United Kingdom. First results show that the obtained root mean squared difference is 10 cm when using high resolution high precision data sets (i.e. aerial photographs of flood extent and a LiDAR-derived DEM) and amount to 50 cm when using as inputs moderate resolution SAR imagery from ENVISAT and a SRTM-derived DEM.

Diagnosing scaling behavior of groundwater with a fully-integrated, high resolution hydrologic model simulated over the continental US (Invited)

NASA Astrophysics Data System (ADS)

Maxwell, R. M.; Condon, L. E.; Kollet, S. J.

2013-12-01

Groundwater is an important component of the hydrologic cycle yet its importance is often overlooked. Aquifers are a critical water resource, particularly in irrigation, but also participates in moderating the land-energy balance over the so-called critical zone of 2-10m in water table depth. Yet,the scaling behavior of groundwater is not well known. Here, we present the results of a fully-integrated hydrologic model run over a 6.3M km2 domain that covers much of North America focused on the continental United States. This model encompasses both the Mississippi and Colorado River watersheds in their entirety at 1km resolution and is constructed using the fully-integrated groundwater-vadose zone-surface water-land surface model, ParFlow. Results from this work are compared to observations (both of surface water flow and groundwater depths) and approaches are presented for observing of these integrated systems. Furthermore, results are used to understand the scaling behavior of groundwater over the continent at high resolution. Implications for understanding dominant hydrological processes at large scales will be discussed.

A high-resolution 3D ultrasonic system for rapid evaluation of the anterior and posterior segment.

PubMed

Peyman, Gholam A; Ingram, Charles P; Montilla, Leonardo G; Witte, Russell S

2012-01-01

Traditional ultrasound imaging systems for ophthalmology employ slow, mechanical scanning of a single-element ultrasound transducer. The goal was to demonstrate rapid examination of the anterior and posterior segment with a three-dimensional (3D) commercial ultrasound system incorporating high-resolution linear probe arrays. The 3D images of the porcine eye were generated in approximately 10 seconds by scanning one of two commercial linear arrays (25- and 50-MHz). Healthy enucleated pig eyes were compared with those with induced injury or placement of a foreign material (eg, metal). Rapid, volumetric imaging was also demonstrated in one human eye in vivo. The 50-MHz probe provided exquisite volumetric images of the anterior segment at a depth up to 15 mm and axial resolution of 30 μm. The 25-MHz probe provided a larger field of view (lateral X depth: 20 × 30 mm), sufficient for capturing the entire anterior and posterior segments of the pig eye, at a resolution of 60 μm. A 50-MHz scan through the human eyelid illustrated detailed structures of the Meibomian glands, cilia, cornea, and anterior segment back to the posterior capsule. The 3D system with its high-frequency ultrasound arrays, fast data acquisition, and volume rendering capability shows promise for investigating anterior and posterior structures of the eye. Copyright 2012, SLACK Incorporated.

Revealing the hidden structures of an historical bridge by high resolution geophysical methods : A case study of Pont de Coq, France

NASA Astrophysics Data System (ADS)

Antoine, R.; Fauchard, C.

2012-04-01

In the last decades, public institutions have shown an increased interest in heritage conservation and monuments protection. Geophysical methods have been used for 20 years as powerful tools to assist in the curation of buildings. Ancient masonry bridges usually exhibit a complex structure/geometry. This complexity makes the use of combined geophysical methods highly necessary to obtain a meaningful model of the internal structure of such constructions and their environment. A high resolution geophysical survey was carried out at a stone arch bridge called Pont de Coq and located near Menerval, Normandy (France) in 2011. This decameter-sized bridge was built 400 years ago and crosses the Epte river, which is a tributary of the Seine river. The main objective of this work was to evaluate the structural state of the bridge and its vicinities. Two complementary methods were used : Electrical Resistivity tomography (ERT) and Ground Penetrating radar (GPR). Several profiles were realized along the road crossing the bridge and transversally to the construction, as well as on the two banks of the Epte river. High resolution electrical resistivity data were obtained both in the horizontal and vertical direction up to 8 meter-depth by two ERT methods (Wenner/Schlumberger and dipole-dipole). The GPR was used with shielded antennas at three different frequencies (200 MHz, 400 MHz and 1.5 GHz). This approach lead to the investigation of the subsurface up to approximately 6 meters-depth, with a resolution in the range of 0.04 m-0.40m. An excellent correlation is obtained between the ERT and the GPR methods, allowing us to propose a precise structural model of the Pont de Coq and to characterize the soil under the building. Several anomalies are observed within the roadway of the bridge at 50 cm-depth, as well as within the vaulting, corresponding to the presence of voids and a root network which lead to the slow destruction of the structure.

Depth-resolved ballistic imaging in a low-depth-of-field optical Kerr gated imaging system

NASA Astrophysics Data System (ADS)

Zheng, Yipeng; Tan, Wenjiang; Si, Jinhai; Ren, YuHu; Xu, Shichao; Tong, Junyi; Hou, Xun

2016-09-01

We demonstrate depth-resolved imaging in a ballistic imaging system, in which a heterodyned femtosecond optical Kerr gate is introduced to extract useful imaging photons for detecting an object hidden in turbid media and a compound lens is proposed to ensure both the depth-resolved imaging capability and the long working distance. Two objects of about 15-μm widths hidden in a polystyrene-sphere suspension have been successfully imaged with approximately 600-μm depth resolution. Modulation-transfer-function curves with the object in and away from the object plane have also been measured to confirm the depth-resolved imaging capability of the low-depth-of-field (low-DOF) ballistic imaging system. This imaging approach shows potential for application in research of the internal structure of highly scattering fuel spray.

Depth-resolved ballistic imaging in a low-depth-of-field optical Kerr gated imaging system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Yipeng; Tan, Wenjiang, E-mail: tanwenjiang@mail.xjtu.edu.cn; Si, Jinhai

2016-09-07

We demonstrate depth-resolved imaging in a ballistic imaging system, in which a heterodyned femtosecond optical Kerr gate is introduced to extract useful imaging photons for detecting an object hidden in turbid media and a compound lens is proposed to ensure both the depth-resolved imaging capability and the long working distance. Two objects of about 15-μm widths hidden in a polystyrene-sphere suspension have been successfully imaged with approximately 600-μm depth resolution. Modulation-transfer-function curves with the object in and away from the object plane have also been measured to confirm the depth-resolved imaging capability of the low-depth-of-field (low-DOF) ballistic imaging system. Thismore » imaging approach shows potential for application in research of the internal structure of highly scattering fuel spray.« less

Real time ablation rate measurement during high aspect-ratio hole drilling with a 120-ps fiber laser.

PubMed

Mezzapesa, Francesco P; Sibillano, Teresa; Di Niso, Francesca; Ancona, Antonio; Lugarà, Pietro M; Dabbicco, Maurizio; Scamarcio, Gaetano

2012-01-02

We report on the instantaneous detection of the ablation rate as a function of depth during ultrafast microdrilling of metal targets. The displacement of the ablation front has been measured with a sub-wavelength resolution using an all-optical sensor based on the laser diode self-mixing interferometry. The time dependence of the laser ablation process within the depth of aluminum and stainless steel targets has been investigated to study the evolution of the material removal rate in high aspect-ratio micromachined holes.

High Resolution Trajectory-Based Smoke Forecasts Using VIIRS Aerosol Optical Depth and NUCAPS Carbon Monoxide Retrievals

NASA Astrophysics Data System (ADS)

Pierce, R. B.; Smith, N.; Barnet, C.; Barnet, C. D.; Kondragunta, S.; Davies, J. E.; Strabala, K.

2016-12-01

We use Suomi National Polar-orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) Aerosol Optical Depth (AOD) and combined Cross-track Infrared Sounder (CrIS) and Advanced Technology Microwave Sounder (ATMS) NOAA-Unique CrIS-ATMS Processing System (NUCAPS) carbon monoxide (CO) retrievals to initialize trajectory-based, high spatial resolution North American smoke dispersion forecasts during the May 2016 Fort McMurray wildfire in northern Alberta and the July 2016 Soberanes Fire in Northern California. These two case studies illustrate how long range transport of wild fire smoke can adversely impact surface air quality thousands of kilometers downwind and how local topographic flow can lead to complex transport patterns near the wildfire source region. The NUCAPS CO retrievals are shown to complement the high resolution VIIRS AOD retrievals by providing retrievals in partially cloudy scenes and also providing information on the vertical distribution of the wildfire smoke. This work addresses the need for low latency, web-based, high resolution forecasts of smoke dispersion for use by NWS Incident Meteorologists (IMET) to support on-site decision support services for fire incident management teams. The primary user community for the IDEA-I smoke forecasts is the Western regions of the NWS and US EPA due to the significant impacts of wildfires in these regions. Secondary users include Alaskan NWS offices and Western State and Local air quality management agencies such as the Western Regional Air Partnership (WRAP).

Global Monitoring of Air Pollution Using Spaceborne Sensors

NASA Technical Reports Server (NTRS)

Chu, D. A.; Kaufman, Y. J.; Tanre, D.; Remer, L. A.; Einaudi, Franco (Technical Monitor)

2000-01-01

The MODIS sensor onboard EOS-Terra satellite provides not only daily global coverage but also high spectral (36 channels from 0.41 to 14 microns wavelength) and spatial (250m, 500m and 1km) resolution measurements. A similar MODIS instrument will be also configured into EOS-Aqua satellite to be launched soon. Using the complementary EOS-Terra and EOS-Aqua sun-synchronous orbits (10:30 AM and 1:30 PM equator-crossing time respectively), it enables us also to study the diurnal changes of the Earth system. It is unprecedented for the derivation of aerosol properties with such high spatial resolution and daily global converge. Aerosol optical depth and other aerosol properties, e.g., Angstrom coefficient over land and particle size over ocean, are derived as standard products at a spatial resolution of 10 x 10 sq km. The high resolution results are found surprisingly useful in detecting aerosols in both urban and rural regions as a result of urban/industrial pollution and biomass burning. For long-lived aerosols, the ability to monitoring the evolution of these aerosol events could help us to establish an system of air quality especially for highly populated areas. Aerosol scenarios with city pollution and biomass burning will be presented. Also presented are the method used in the derivation of aerosol optical properties and preliminary results will be presented, and issue as well as obstacles in validating aerosol optical depth with AERONET ground-based observations.

An interferometer for high-resolution optical surveillance from geostationary orbit - space system study

NASA Astrophysics Data System (ADS)

Bonino, L.; Bresciani, F.; Piasini, G.; Flebus, C.; Lecat, J.-H.; Roose, S.; Pisani, M.; Cabral, A.; Rebordão, J.; Proença, C.; Costal, J.; Lima, P. U.; Musso, F.

2017-11-01

This paper describes the study of an interferometric instrument for the high-resolution surveillance of the Earth from geostationary orbit (GEO) performed for the EUCLID CEPA 9 RTP 9.9 "High Resolution Optical Satellite Sensor" project of the WEAO Research Cell. It is an in-depth description of a part of the activities described in. The instrument design, both optical and mechanical, is described; tradeoffs have been done for different restoration methods, based on an image generated using calculated point spread functions (PSF's) for the complete FOV. Co-phasing concept for the optical interferometer has been defined together with the optical metrology needed. Design and simulation of the overall instrument control system was carried out.

High-resolution LCOS microdisplay with sub-kHz frame rate for high performance, high precision 3D sensor

NASA Astrophysics Data System (ADS)

Lazarev, Grigory; Bonifer, Stefanie; Engel, Philip; Höhne, Daniel; Notni, Gunther

2017-06-01

We report about the implementation of the liquid crystal on silicon (LCOS) microdisplay with 1920 by 1080 resolution and 720 Hz frame rate. The driving solution is FPGA-based. The input signal is converted from the ultrahigh-resolution HDMI 2.0 signal into HD frames, which follow with the specified 720 Hz frame rate. Alternatively the signal is generated directly on the FPGA with built-in pattern generator. The display is showing switching times below 1.5 ms for the selected working temperature. The bit depth of the addressed image achieves 8 bit within each frame. The microdisplay is used in the fringe projection-based 3D sensing system, implemented by Fraunhofer IOF.

Conflicts and Communication between High-Achieving Chinese American Adolescents and Their Parents

ERIC Educational Resources Information Center

Qin, Desiree Baolian; Chang, Tzu-Fen; Han, Eun-Jin; Chee, Grace

2012-01-01

Drawing on in-depth interview data collected on 18 high-achieving Chinese American students, the authors examine domains of acculturation-based conflicts, parent and child internal conflicts, and conflict resolution in their families. Their analyses show that well-established negative communication patterns in educational expectations, divergent…

An endoscopic diffuse optical tomographic method with high resolution based on the improved FOCUSS method

NASA Astrophysics Data System (ADS)

Qin, Zhuanping; Ma, Wenjuan; Ren, Shuyan; Geng, Liqing; Li, Jing; Yang, Ying; Qin, Yingmei

2017-02-01

Endoscopic DOT has the potential to apply to cancer-related imaging in tubular organs. Although the DOT has relatively large tissue penetration depth, the endoscopic DOT is limited by the narrow space of the internal tubular tissue, so as to the relatively small penetration depth. Because some adenocarcinomas including cervical adenocarcinoma are located in deep canal, it is necessary to improve the imaging resolution under the limited measurement condition. To improve the resolution, a new FOCUSS algorithm along with the image reconstruction algorithm based on the effective detection range (EDR) is developed. This algorithm is based on the region of interest (ROI) to reduce the dimensions of the matrix. The shrinking method cuts down the computation burden. To reduce the computational complexity, double conjugate gradient method is used in the matrix inversion. For a typical inner size and optical properties of the cervix-like tubular tissue, reconstructed images from the simulation data demonstrate that the proposed method achieves equivalent image quality to that obtained from the method based on EDR when the target is close the inner boundary of the model, and with higher spatial resolution and quantitative ratio when the targets are far from the inner boundary of the model. The quantitative ratio of reconstructed absorption and reduced scattering coefficient can be up to 70% and 80% under 5mm depth, respectively. Furthermore, the two close targets with different depths can be separated from each other. The proposed method will be useful to the development of endoscopic DOT technologies in tubular organs.

A high-resolution time-depth view of dimethylsulphide cycling in the surface sea

PubMed Central

Royer, S.-J.; Galí, M.; Mahajan, A. S.; Ross, O. N.; Pérez, G. L.; Saltzman, E. S.; Simó, R.

2016-01-01

Emission of the trace gas dimethylsulphide (DMS) from the ocean influences the chemical and optical properties of the atmosphere, and the olfactory landscape for foraging marine birds, turtles and mammals. DMS concentration has been seen to vary across seasons and latitudes with plankton taxonomy and activity, and following the seascape of ocean’s physics. However, whether and how does it vary at the time scales of meteorology and day-night cycles is largely unknown. Here we used high-resolution measurements over time and depth within coherent water patches in the open sea to show that DMS concentration responded rapidly but resiliently to mesoscale meteorological perturbation. Further, it varied over diel cycles in conjunction with rhythmic photobiological indicators in phytoplankton. Combining data and modelling, we show that sunlight switches and tunes the balance between net biological production and abiotic losses. This is an outstanding example of how biological diel rhythms affect biogeochemical processes. PMID:27578300

A high-resolution time-depth view of dimethylsulphide cycling in the surface sea

NASA Astrophysics Data System (ADS)

Royer, S.-J.; Galí, M.; Mahajan, A. S.; Ross, O. N.; Pérez, G. L.; Saltzman, E. S.; Simó, R.

2016-08-01

Emission of the trace gas dimethylsulphide (DMS) from the ocean influences the chemical and optical properties of the atmosphere, and the olfactory landscape for foraging marine birds, turtles and mammals. DMS concentration has been seen to vary across seasons and latitudes with plankton taxonomy and activity, and following the seascape of ocean’s physics. However, whether and how does it vary at the time scales of meteorology and day-night cycles is largely unknown. Here we used high-resolution measurements over time and depth within coherent water patches in the open sea to show that DMS concentration responded rapidly but resiliently to mesoscale meteorological perturbation. Further, it varied over diel cycles in conjunction with rhythmic photobiological indicators in phytoplankton. Combining data and modelling, we show that sunlight switches and tunes the balance between net biological production and abiotic losses. This is an outstanding example of how biological diel rhythms affect biogeochemical processes.

Miniature all-optical probe for photoacoustic and ultrasound dual-modality imaging

NASA Astrophysics Data System (ADS)

Li, Guangyao; Guo, Zhendong; Chen, Sung-Liang

2018-02-01

Photoacoustic (PA) imaging forms an image based on optical absorption contrasts with ultrasound (US) resolution. In contrast, US imaging is based on acoustic backscattering to provide structural information. In this study, we develop a miniature all-optical probe for high-resolution PA-US dual-modality imaging over a large imaging depth range. The probe employs three individual optical fibers (F1-F3) to achieve optical generation and detection of acoustic waves for both PA and US modalities. To offer wide-angle laser illumination, fiber F1 with a large numerical aperture (NA) is used for PA excitation. On the other hand, wide-angle US waves are generated by laser illumination on an optically absorbing composite film which is coated on the end face of fiber F2. Both the excited PA and backscattered US waves are detected by a Fabry-Pérot cavity on the tip of fiber F3 for wide-angle acoustic detection. The wide angular features of the three optical fibers make large-NA synthetic aperture focusing technique possible and thus high-resolution PA and US imaging. The probe diameter is less than 2 mm. Over a depth range of 4 mm, lateral resolutions of PA and US imaging are 104-154 μm and 64-112 μm, respectively, and axial resolutions of PA and US imaging are 72-117 μm and 31-67 μm, respectively. To show the imaging capability of the probe, phantom imaging with both PA and US contrasts is demonstrated. The results show that the probe has potential for endoscopic and intravascular imaging applications that require PA and US contrast with high resolution.

Dual-modal three-dimensional imaging of single cells with isometric high resolution using an optical projection tomography microscope

NASA Astrophysics Data System (ADS)

Miao, Qin; Rahn, J. Richard; Tourovskaia, Anna; Meyer, Michael G.; Neumann, Thomas; Nelson, Alan C.; Seibel, Eric J.

2009-11-01

The practice of clinical cytology relies on bright-field microscopy using absorption dyes like hematoxylin and eosin in the transmission mode, while the practice of research microscopy relies on fluorescence microscopy in the epi-illumination mode. The optical projection tomography microscope is an optical microscope that can generate 3-D images of single cells with isometric high resolution both in absorption and fluorescence mode. Although the depth of field of the microscope objective is in the submicron range, it can be extended by scanning the objective's focal plane. The extended depth of field image is similar to a projection in a conventional x-ray computed tomography. Cells suspended in optical gel flow through a custom-designed microcapillary. Multiple pseudoprojection images are taken by rotating the microcapillary. After these pseudoprojection images are further aligned, computed tomography methods are applied to create 3-D reconstruction. 3-D reconstructed images of single cells are shown in both absorption and fluorescence mode. Fluorescence spatial resolution is measured at 0.35 μm in both axial and lateral dimensions. Since fluorescence and absorption images are taken in two different rotations, mechanical error may cause misalignment of 3-D images. This mechanical error is estimated to be within the resolution of the system.

Improvement of depth resolution in depth-resolved wavenumber-scanning interferometry using wavenumber-domain least-squares algorithm: comparison and experiment.

PubMed

Bai, Yulei; Jia, Quanjie; Zhang, Yun; Huang, Qiquan; Yang, Qiyu; Ye, Shuangli; He, Zhaoshui; Zhou, Yanzhou; Xie, Shengli

2016-05-01

It is important to improve the depth resolution in depth-resolved wavenumber-scanning interferometry (DRWSI) owing to the limited range of wavenumber scanning. In this work, a new nonlinear iterative least-squares algorithm called the wavenumber-domain least-squares algorithm (WLSA) is proposed for evaluating the phase of DRWSI. The simulated and experimental results of the Fourier transform (FT), complex-number least-squares algorithm (CNLSA), eigenvalue-decomposition and least-squares algorithm (EDLSA), and WLSA were compared and analyzed. According to the results, the WLSA is less dependent on the initial values, and the depth resolution δz is approximately changed from δz to δz/6. Thus, the WLSA exhibits a better performance than the FT, CNLSA, and EDLSA.

Independent evaluation of the SNODAS snow depth product using regional scale LiDAR-derived measurements

NASA Astrophysics Data System (ADS)

Hedrick, A.; Marshall, H.-P.; Winstral, A.; Elder, K.; Yueh, S.; Cline, D.

2014-06-01

Repeated Light Detection and Ranging (LiDAR) surveys are quickly becoming the de facto method for measuring spatial variability of montane snowpacks at high resolution. This study examines the potential of a 750 km2 LiDAR-derived dataset of snow depths, collected during the 2007 northern Colorado Cold Lands Processes Experiment (CLPX-2), as a validation source for an operational hydrologic snow model. The SNOw Data Assimilation System (SNODAS) model framework, operated by the US National Weather Service, combines a physically-based energy-and-mass-balance snow model with satellite, airborne and automated ground-based observations to provide daily estimates of snowpack properties at nominally 1 km resolution over the coterminous United States. Independent validation data is scarce due to the assimilating nature of SNODAS, compelling the need for an independent validation dataset with substantial geographic coverage. Within twelve distinctive 500 m × 500 m study areas located throughout the survey swath, ground crews performed approximately 600 manual snow depth measurements during each of the CLPX-2 LiDAR acquisitions. This supplied a dataset for constraining the uncertainty of upscaled LiDAR estimates of snow depth at the 1 km SNODAS resolution, resulting in a root-mean-square difference of 13 cm. Upscaled LiDAR snow depths were then compared to the SNODAS-estimates over the entire study area for the dates of the LiDAR flights. The remotely-sensed snow depths provided a more spatially continuous comparison dataset and agreed more closely to the model estimates than that of the in situ measurements alone. Finally, the results revealed three distinct areas where the differences between LiDAR observations and SNODAS estimates were most drastic, suggesting natural processes specific to these regions as causal influences on model uncertainty.

Independent evaluation of the SNODAS snow depth product using regional-scale lidar-derived measurements

NASA Astrophysics Data System (ADS)

Hedrick, A.; Marshall, H.-P.; Winstral, A.; Elder, K.; Yueh, S.; Cline, D.

2015-01-01

Repeated light detection and ranging (lidar) surveys are quickly becoming the de facto method for measuring spatial variability of montane snowpacks at high resolution. This study examines the potential of a 750 km2 lidar-derived data set of snow depths, collected during the 2007 northern Colorado Cold Lands Processes Experiment (CLPX-2), as a validation source for an operational hydrologic snow model. The SNOw Data Assimilation System (SNODAS) model framework, operated by the US National Weather Service, combines a physically based energy-and-mass-balance snow model with satellite, airborne and automated ground-based observations to provide daily estimates of snowpack properties at nominally 1 km resolution over the conterminous United States. Independent validation data are scarce due to the assimilating nature of SNODAS, compelling the need for an independent validation data set with substantial geographic coverage. Within 12 distinctive 500 × 500 m study areas located throughout the survey swath, ground crews performed approximately 600 manual snow depth measurements during each of the CLPX-2 lidar acquisitions. This supplied a data set for constraining the uncertainty of upscaled lidar estimates of snow depth at the 1 km SNODAS resolution, resulting in a root-mean-square difference of 13 cm. Upscaled lidar snow depths were then compared to the SNODAS estimates over the entire study area for the dates of the lidar flights. The remotely sensed snow depths provided a more spatially continuous comparison data set and agreed more closely to the model estimates than that of the in situ measurements alone. Finally, the results revealed three distinct areas where the differences between lidar observations and SNODAS estimates were most drastic, providing insight into the causal influences of natural processes on model uncertainty.

Novel dental dynamic depth profilometric imaging using simultaneous frequency-domain infrared photothermal radiometry and laser luminescence

NASA Astrophysics Data System (ADS)

Nicolaides, Lena; Mandelis, Andreas

2000-01-01

A high-spatial-resolution dynamic experimental imaging setup, which can provide simultaneous measurements of laser- induced frequency-domain infrared photothermal radiometric and luminescence signals from defects in teeth, has been developed for the first time. The major findings of this work are: (1) radiometric images are complementary to (anticorrelated with) luminescence images, as a result of the nature of the two physical signal generation processes; (2) the radiometric amplitude exhibits much superior dynamic (signal resolution) range to luminescence in distinguishing between intact and cracked sub-surface structures in the enamel; (3) the radiometric signal (amplitude and phase) produces dental images with much better defect localization, delineation, and resolution; (4) radiometric images (amplitude and phase) at a fixed modulation frequency are depth profilometric, whereas luminescence images are not; and (5) luminescence frequency responses from enamel and hydroxyapatite exhibit two relaxation lifetimes, the longer of which (approximately ms) is common to all and is not sensitive to the defect state and overall quality of the enamel. Simultaneous radiometric and luminescence frequency scans for the purpose of depth profiling were performed and a quantitative theoretical two-lifetime rate model of dental luminescence was advanced.

External Mask Based Depth and Light Field Camera

DTIC Science & Technology

2013-12-08

laid out in the previous light field cameras. A good overview of the sampling of the plenoptic function can be found in the survey work by Wetzstein et...view is shown in Figure 6. 5. Applications High spatial resolution depth and light fields are a rich source of information about the plenoptic ...http://www.pelicanimaging.com/. [4] E. Adelson and J. Wang. Single lens stereo with a plenoptic camera. Pattern Analysis and Machine Intelligence

High-Resolution Magnetic Properties and Cyclicity of Contourites from IODP Site U1389 (West Iberian Margin)

NASA Astrophysics Data System (ADS)

Richter, C.; Adesiyun, O.; Acton, G.; Sidorovskaia, N.; Sierro, F. J.; Xuan, C.; Verosub, K. L.

2015-12-01

We present high-resolution paleomagnetic and rock magnetic results from the lower part of the APC-cored section (36 - 107 meters composite depth) of Integrated Ocean Drilling Program (IODP) Site U1389 (36º 25.515'N; 7º 16.683'W, 644 m water depth). This site was cored as part of the IODP Mediterranean Outflow Expedition to address paleoceanographic questions about the evolution of the North Atlantic Mediterranean and climate system over the past 6 million years. The recovered section at Site U1389 consists of a thick, rapidly accumulated (~40 cm/kyr), and very uniform series of contouritic sediment. Ages were obtained by tuning the planktonic foraminifer oxygen isotope data to the NGRIP ice core record. We collected rock magnetic and paleomagnetic measurements at 1-cm resolution on 71-m of U-channel samples (representing ~145 k.yr.), with the goal of extracting a high-resolution record of paleoenvironmental variability, relative geomagnetic paleointensity, and paleosecular variation. Stepwise demagnetization of the natural remanence (NRM) demonstrates the successful removal of a secondary, predominantly drill-string induced, magnetization and identification of a stable and strong primary magnetization carried by the sediment samples (average MAD calculated by principal component analysis: ~1º). Excellent behavior of the samples during alternating field demagnetization and isothermal remanent magnetization (IRM) acquisition suggest magnetite as the main carrier of magnetic remanence. Relative paleointensity estimates were determined by normalizing the NRM by the ARM, IRM, and magnetic susceptibility. Time-frequency analyses of high-resolution concentration and grain-size dependent paleomagnetic proxy data for the entire 107-m (200 k.yr.) long APC section of Site U1389 will be presented with the goal of identifying the driver of cyclic changes in the sedimentary section.

In vivo optical coherence tomography imaging of dissolution of hyaluronic acid microneedles in human skin (Conference Presentation)

NASA Astrophysics Data System (ADS)

Song, Seungri; Kim, Jung Dong; Bae, Jung-hyun; Chang, Sooho; Kim, Soocheol; Lee, Hyungsuk; Jeong, Dohyeon; Kim, Hong Kee; Joo, Chulmin

2017-02-01

Transdermal drug delivery (TDD) has been recently highlighted as an alternative to oral delivery and hypodermic injections. Among many methods, drug delivery using a microneedle (MN) is one of the promising administration strategies due to its high skin permeability, mininal invasiveness, and ease of injection. In addition, microneedle-based TDD is explored for cosmetic and therapeutic purposes, rapidly developing market of microneedle industry for general population. To date, visualization of microneedles inserted into biological tissue has primarily been performed ex vivo. MRI, CT and ultrasound imaging do not provide sufficient spatial resolution, and optical microscopy is not suitable because of their limited imaging depth; structure of microneedles located in 0.2 1mm into the skin cannot be visulalized. Optical coherence tomography (OCT) is a non-invasive, cross-sectional optical imaging modality for biological tissue with high spatial resolution and acquisition speed. Compared with ultrasound imaging, it exhibits superior spatial resolution (1 10 um) and high sensitivity, while providing an imaging depth of biological tissue down to 1 2 mm. Here, we present in situ imaging and analysis of the penetration and dissolution characteristics of hyaluronic acid based MNs (HA-MN) with various needle heights in human skin in vivo. In contrast to other studies, we measured the actual penetration depths of the HA-MNs by considering the experimentally measured refractive index of HA in the solid state. For the dissolution dynamics of the HA-MNs, time-lapse structural alteration of the MNs could be clearly visualized, and the volumetric changes of the MNs were measured with an image analysis algorithm.

Parameterization of water vapor using high-resolution GPS data and empirical models

NASA Astrophysics Data System (ADS)

Ningombam, Shantikumar S.; Jade, Sridevi; Shrungeshwara, T. S.

2018-03-01

The present work evaluates eleven existing empirical models to estimate Precipitable Water Vapor (PWV) over a high-altitude (4500 m amsl), cold-desert environment. These models are tested extensively and used globally to estimate PWV for low altitude sites (below 1000 m amsl). The moist parameters used in the model are: water vapor scale height (Hc), dew point temperature (Td) and water vapor pressure (Es 0). These moist parameters are derived from surface air temperature and relative humidity measured at high temporal resolution from automated weather station. The performance of these models are examined statistically with observed high-resolution GPS (GPSPWV) data over the region (2005-2012). The correlation coefficient (R) between the observed GPSPWV and Model PWV is 0.98 at daily data and varies diurnally from 0.93 to 0.97. Parameterization of moisture parameters were studied in-depth (i.e., 2 h to monthly time scales) using GPSPWV , Td , and Es 0 . The slope of the linear relationships between GPSPWV and Td varies from 0.073°C-1 to 0.106°C-1 (R: 0.83 to 0.97) while GPSPWV and Es 0 varied from 1.688 to 2.209 (R: 0.95 to 0.99) at daily, monthly and diurnal time scales. In addition, the moist parameters for the cold desert, high-altitude environment are examined in-depth at various time scales during 2005-2012.

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.

PubMed

Migliori, Bianca; Datta, Malika S; Dupre, Christophe; Apak, Mehmet C; Asano, Shoh; Gao, Ruixuan; Boyden, Edward S; Hermanson, Ola; Yuste, Rafael; Tomer, Raju

2018-05-29

Advances in tissue clearing and molecular labeling methods are enabling unprecedented optical access to large intact biological systems. These developments fuel the need for high-speed microscopy approaches to image large samples quantitatively and at high resolution. While light sheet microscopy (LSM), with its high planar imaging speed and low photo-bleaching, can be effective, scaling up to larger imaging volumes has been hindered by the use of orthogonal light sheet illumination. To address this fundamental limitation, we have developed light sheet theta microscopy (LSTM), which uniformly illuminates samples from the same side as the detection objective, thereby eliminating limits on lateral dimensions without sacrificing the imaging resolution, depth, and speed. We present a detailed characterization of LSTM, and demonstrate its complementary advantages over LSM for rapid high-resolution quantitative imaging of large intact samples with high uniform quality. The reported LSTM approach is a significant step for the rapid high-resolution quantitative mapping of the structure and function of very large biological systems, such as a clarified thick coronal slab of human brain and uniformly expanded tissues, and also for rapid volumetric calcium imaging of highly motile animals, such as Hydra, undergoing non-isomorphic body shape changes.

OCT in Dermatology

NASA Astrophysics Data System (ADS)

Holmes, John; Welzel, Julia

OCT is increasingly interesting for non-invasive skin imaging in Dermatology. Due to its resolution and imaging depth, OCT is already routinely established for diagnosis of nonmelanoma skin cancer, whereas for pigmented lesions, the resolution is still not high enough. OCT has also a high value for monitoring of treatment effects, for example to control healing after non-surgical topical treatment of basal cell carcinomas. In summary, there are several indications for applications of OCT to image skin diseases, and its importance will grow in the future due to further technical developments like speckle variance OCT.

Enhancing Deep-Water Low-Resolution Gridded Bathymetry Using Single Image Super-Resolution

NASA Astrophysics Data System (ADS)

Elmore, P. A.; Nock, K.; Bonanno, D.; Smith, L.; Ferrini, V. L.; Petry, F. E.

2017-12-01

We present research to employ single-image super-resolution (SISR) algorithms to enhance knowledge of the seafloor using the 1-minute GEBCO 2014 grid when 100m grids from high-resolution sonar systems are available for training. Our numerical upscaling experiments of x15 upscaling of the GEBCO grid along three areas of the Eastern Pacific Ocean along mid-ocean ridge systems where we have these 100m gridded bathymetry data sets, which we accept as ground-truth. We show that four SISR algorithms can enhance this low-resolution knowledge of bathymetry versus bicubic or Spline-In-Tension algorithms through upscaling under these conditions: 1) rough topography is present in both training and testing areas and 2) the range of depths and features in the training area contains the range of depths in the enhancement area. We quantitatively judged successful SISR enhancement versus bicubic interpolation when Student's hypothesis testing show significant improvement of the root-mean squared error (RMSE) between upscaled bathymetry and 100m gridded ground-truth bathymetry at p < 0.05. In addition, we found evidence that random forest based SISR methods may provide more robust enhancements versus non-forest based SISR algorithms.

Probing neural tissue with airy light-sheet microscopy: investigation of imaging performance at depth within turbid media

NASA Astrophysics Data System (ADS)

Nylk, Jonathan; McCluskey, Kaley; Aggarwal, Sanya; Tello, Javier A.; Dholakia, Kishan

2017-02-01

Light-sheet microscopy (LSM) has received great interest for fluorescent imaging applications in biomedicine as it facilitates three-dimensional visualisation of large sample volumes with high spatiotemporal resolution whilst minimising irradiation of, and photo-damage to the specimen. Despite these advantages, LSM can only visualize superficial layers of turbid tissues, such as mammalian neural tissue. Propagation-invariant light modes have played a key role in the development of high-resolution LSM techniques as they overcome the natural divergence of a Gaussian beam, enabling uniform and thin light-sheets over large distances. Most notably, Bessel and Airy beam-based light-sheet imaging modalities have been demonstrated. In the single-photon excitation regime and in lightly scattering specimens, Airy-LSM has given competitive performance with advanced Bessel-LSM techniques. Airy and Bessel beams share the property of self-healing, the ability of the beam to regenerate its transverse beam profile after propagation around an obstacle. Bessel-LSM techniques have been shown to increase the penetration-depth of the illumination into turbid specimens but this effect has been understudied in biologically relevant tissues, particularly for Airy beams. It is expected that Airy-LSM will give a similar enhancement over Gaussian-LSM. In this paper, we report on the comparison of Airy-LSM and Gaussian-LSM imaging modalities within cleared and non-cleared mouse brain tissue. In particular, we examine image quality versus tissue depth by quantitative spatial Fourier analysis of neural structures in virally transduced fluorescent tissue sections, showing a three-fold enhancement at 50 μm depth into non-cleared tissue with Airy-LSM. Complimentary analysis is performed by resolution measurements in bead-injected tissue sections.

Single grating x-ray imaging for dynamic biological systems

NASA Astrophysics Data System (ADS)

Morgan, Kaye S.; Paganin, David M.; Parsons, David W.; Donnelley, Martin; Yagi, Naoto; Uesugi, Kentaro; Suzuki, Yoshio; Takeuchi, Akihisa; Siu, Karen K. W.

2012-07-01

Biomedical studies are already benefiting from the excellent contrast offered by phase contrast x-ray imaging, but live imaging work presents several challenges. Living samples make it particularly difficult to achieve high resolution, sensitive phase contrast images, as exposures must be short and cannot be repeated. We therefore present a single-exposure, high-flux method of differential phase contrast imaging [1, 2, 3] in the context of imaging live airways for Cystic Fibrosis (CF) treatment assessment [4]. The CF study seeks to non-invasively observe the liquid lining the airways, which should increase in depth in response to effective treatments. Both high spatial resolution and sensitivity are required in order to track micron size changes in a liquid that is not easily differentiated from the tissue on which it lies. Our imaging method achieves these goals by using a single attenuation grating or grid as a reference pattern, and analyzing how the sample deforms the pattern to quantitatively retrieve the phase depth of the sample. The deformations are mapped at each pixel in the image using local cross-correlations comparing each 'sample and pattern' image with a reference 'pattern only' image taken before the sample is introduced. This produces a differential phase image, which may be integrated to give the sample phase depth.

GPU-accelerated two dimensional synthetic aperture focusing for photoacoustic microscopy

NASA Astrophysics Data System (ADS)

Liu, Siyu; Feng, Xiaohua; Gao, Fei; Jin, Haoran; Zhang, Ruochong; Luo, Yunqi; Zheng, Yuanjin

2018-02-01

Acoustic resolution photoacoustic microscopy (AR-PAM) generally suffers from limited depth of focus, which had been extended by synthetic aperture focusing techniques (SAFTs). However, for three dimensional AR-PAM, current one dimensional (1D) SAFT and its improved version like cross-shaped SAFT do not provide isotropic resolution in the lateral direction. The full potential of the SAFT remains to be tapped. To this end, two dimensional (2D) SAFT with fast computing architecture is proposed in this work. Explained by geometric modeling and Fourier acoustics theories, 2D-SAFT provide the narrowest post-focusing capability, thus to achieve best lateral resolution. Compared with previous 1D-SAFT techniques, the proposed 2D-SAFT improved the lateral resolution by at least 1.7 times and the signal-to-noise ratio (SNR) by about 10 dB in both simulation and experiments. Moreover, the improved 2D-SAFT algorithm is accelerated by a graphical processing unit that reduces the long period of reconstruction to only a few seconds. The proposed 2D-SAFT is demonstrated to outperform previous reported 1D SAFT in the aspects of improving the depth of focus, imaging resolution, and SNR with fast computational efficiency. This work facilitates future studies on in vivo deeper and high-resolution photoacoustic microscopy beyond several centimeters.

[Comparative analysis of light sensitivity, depth and motion perception in animals and humans].

PubMed

Schaeffel, F

2017-11-01

This study examined how humans perform regarding light sensitivity, depth perception and motion vision in comparison to various animals. The parameters that limit the performance of the visual system for these different functions were examined. This study was based on literature studies (search in PubMed) and own results. Light sensitivity is limited by the brightness of the retinal image, which in turn is determined by the f‑number of the eye. Furthermore, it is limited by photon noise, thermal decay of rhodopsin, noise in the phototransduction cascade and neuronal processing. In invertebrates, impressive optical tricks have been developed to increase the number of photons reaching the photoreceptors. Furthermore, the spontaneous decay of the photopigment is lower in invertebrates at the cost of higher energy consumption. For depth perception at close range, stereopsis is the most precise but is available only to a few vertebrates. In contrast, motion parallax is used by many species including vertebrates as well as invertebrates. In a few cases accommodation is used for depth measurements or chromatic aberration. In motion vision the temporal resolution of the eye is most important. The ficker fusion frequency correlates in vertebrates with metabolic turnover and body temperature but also has very high values in insects. Apart from that the flicker fusion frequency generally declines with increasing body weight. Compared to animals the performance of the visual system in humans is among the best regarding light sensitivity, is the best regarding depth resolution and in the middle range regarding motion resolution.

A range/depth modulation transfer function (RMTF) framework for characterizing 3D imaging LADAR performance

NASA Astrophysics Data System (ADS)

Staple, Bevan; Earhart, R. P.; Slaymaker, Philip A.; Drouillard, Thomas F., II; Mahony, Thomas

2005-05-01

3D imaging LADARs have emerged as the key technology for producing high-resolution imagery of targets in 3-dimensions (X and Y spatial, and Z in the range/depth dimension). Ball Aerospace & Technologies Corp. continues to make significant investments in this technology to enable critical NASA, Department of Defense, and national security missions. As a consequence of rapid technology developments, two issues have emerged that need resolution. First, the terminology used to rate LADAR performance (e.g., range resolution) is inconsistently defined, is improperly used, and thus has become misleading. Second, the terminology does not include a metric of the system"s ability to resolve the 3D depth features of targets. These two issues create confusion when translating customer requirements into hardware. This paper presents a candidate framework for addressing these issues. To address the consistency issue, the framework utilizes only those terminologies proposed and tested by leading LADAR research and standards institutions. We also provide suggestions for strengthening these definitions by linking them to the well-known Rayleigh criterion extended into the range dimension. To address the inadequate 3D image quality metrics, the framework introduces the concept of a Range/Depth Modulation Transfer Function (RMTF). The RMTF measures the impact of the spatial frequencies of a 3D target on its measured modulation in range/depth. It is determined using a new, Range-Based, Slanted Knife-Edge test. We present simulated results for two LADAR pulse detection techniques and compare them to a baseline centroid technique. Consistency in terminology plus a 3D image quality metric enable improved system standardization.

Superresolved digital in-line holographic microscopy for high-resolution lensless biological imaging

NASA Astrophysics Data System (ADS)

Micó, Vicente; Zalevsky, Zeev

2010-07-01

Digital in-line holographic microscopy (DIHM) is a modern approach capable of achieving micron-range lateral and depth resolutions in three-dimensional imaging. DIHM in combination with numerical imaging reconstruction uses an extremely simplified setup while retaining the advantages provided by holography with enhanced capabilities derived from algorithmic digital processing. We introduce superresolved DIHM incoming from time and angular multiplexing of the sample spatial frequency information and yielding in the generation of a synthetic aperture (SA). The SA expands the cutoff frequency of the imaging system, allowing submicron resolutions in both transversal and axial directions. The proposed approach can be applied when imaging essentially transparent (low-concentration dilutions) and static (slow dynamics) samples. Validation of the method for both a synthetic object (U.S. Air Force resolution test) to quantify the resolution improvement and a biological specimen (sperm cells biosample) are reported showing the generation of high synthetic numerical aperture values working without lenses.

Quantification of Hydrogen Concentrations in Surface and Interface Layers and Bulk Materials through Depth Profiling with Nuclear Reaction Analysis.

PubMed

Wilde, Markus; Ohno, Satoshi; Ogura, Shohei; Fukutani, Katsuyuki; Matsuzaki, Hiroyuki

2016-03-29

Nuclear reaction analysis (NRA) via the resonant (1)H((15)N,αγ)(12)C reaction is a highly effective method of depth profiling that quantitatively and non-destructively reveals the hydrogen density distribution at surfaces, at interfaces, and in the volume of solid materials with high depth resolution. The technique applies a (15)N ion beam of 6.385 MeV provided by an electrostatic accelerator and specifically detects the (1)H isotope in depths up to about 2 μm from the target surface. Surface H coverages are measured with a sensitivity in the order of ~10(13) cm(-2) (~1% of a typical atomic monolayer density) and H volume concentrations with a detection limit of ~10(18) cm(-3) (~100 at. ppm). The near-surface depth resolution is 2-5 nm for surface-normal (15)N ion incidence onto the target and can be enhanced to values below 1 nm for very flat targets by adopting a surface-grazing incidence geometry. The method is versatile and readily applied to any high vacuum compatible homogeneous material with a smooth surface (no pores). Electrically conductive targets usually tolerate the ion beam irradiation with negligible degradation. Hydrogen quantitation and correct depth analysis require knowledge of the elementary composition (besides hydrogen) and mass density of the target material. Especially in combination with ultra-high vacuum methods for in-situ target preparation and characterization, (1)H((15)N,αγ)(12)C NRA is ideally suited for hydrogen analysis at atomically controlled surfaces and nanostructured interfaces. We exemplarily demonstrate here the application of (15)N NRA at the MALT Tandem accelerator facility of the University of Tokyo to (1) quantitatively measure the surface coverage and the bulk concentration of hydrogen in the near-surface region of a H2 exposed Pd(110) single crystal, and (2) to determine the depth location and layer density of hydrogen near the interfaces of thin SiO2 films on Si(100).

Quantification of Hydrogen Concentrations in Surface and Interface Layers and Bulk Materials through Depth Profiling with Nuclear Reaction Analysis

PubMed Central

Wilde, Markus; Ohno, Satoshi; Ogura, Shohei; Fukutani, Katsuyuki; Matsuzaki, Hiroyuki

2016-01-01

Nuclear reaction analysis (NRA) via the resonant 1H(15N,αγ)12C reaction is a highly effective method of depth profiling that quantitatively and non-destructively reveals the hydrogen density distribution at surfaces, at interfaces, and in the volume of solid materials with high depth resolution. The technique applies a 15N ion beam of 6.385 MeV provided by an electrostatic accelerator and specifically detects the 1H isotope in depths up to about 2 μm from the target surface. Surface H coverages are measured with a sensitivity in the order of ~1013 cm-2 (~1% of a typical atomic monolayer density) and H volume concentrations with a detection limit of ~1018 cm-3 (~100 at. ppm). The near-surface depth resolution is 2-5 nm for surface-normal 15N ion incidence onto the target and can be enhanced to values below 1 nm for very flat targets by adopting a surface-grazing incidence geometry. The method is versatile and readily applied to any high vacuum compatible homogeneous material with a smooth surface (no pores). Electrically conductive targets usually tolerate the ion beam irradiation with negligible degradation. Hydrogen quantitation and correct depth analysis require knowledge of the elementary composition (besides hydrogen) and mass density of the target material. Especially in combination with ultra-high vacuum methods for in-situ target preparation and characterization, 1H(15N,αγ)12C NRA is ideally suited for hydrogen analysis at atomically controlled surfaces and nanostructured interfaces. We exemplarily demonstrate here the application of 15N NRA at the MALT Tandem accelerator facility of the University of Tokyo to (1) quantitatively measure the surface coverage and the bulk concentration of hydrogen in the near-surface region of a H2 exposed Pd(110) single crystal, and (2) to determine the depth location and layer density of hydrogen near the interfaces of thin SiO2 films on Si(100). PMID:27077920

Seismogenic structures of the central Apennines and its implication for seismic hazard

NASA Astrophysics Data System (ADS)

Zheng, Y.; Riaz, M. S.; Shan, B.

2017-12-01

The central Apennines belt is formed during the Miocene-to-Pliocene epoch under the environment where the Adriatic Plate collides with and plunges beneath the Eurasian Plate, eventually formed a fold and thrust belt. This active fold and thrust belt has experienced relatively frequent moderate-magnitude earthquakesover, as well as strong destructive earthquakes such as the 1997 Umbira-Marche sequence, the 2009 Mw 6.3 L'Aquila earthquake sequence, and three strong earthquakes occurred in 2016. Such high seismicity makes it one of the most active tectonic zones in the world. Moreover, most of these earthquakes are normal fault events with shallow depths, and most earthquakes occurred in the central Apennines are of lower seismic energy to moment ratio. What seismogenic structure causes such kind of seismic features? and how about the potential seismic hazard in the study region? In order to make in-depth understanding about the seismogenic structures in this reion, we collected seismic data from the INGV, Italy, to model the crustal structure, and to relocate the earthquakes. To improve the spatial resolution of the tomographic images, we collected travel times from 27627 earthquakes with M>1.7 recorded at 387 seismic stations. Double Difference Tomography (hereafter as DDT) is applied to build velocity structures and earthquake locations. Checkerboard test confirms that the spatial resolution between the depths range from 5 20km is better than 10km. The travel time residual is significantly decreased from 1208 ms to 70 ms after the inversion. Horizontal Vp images show that mostly earthquakes occurred in high anomalies zones, especially between 5 10km, whereas at the deeper depths, some of the earthquakes occurred in the low Vp anomalies. For Vs images, shallow earthquakes mainly occurred in low anomalies zone, at depths range of 10 15km, earthquakes are mainly concentrated in normal velocity or relatively lower anomalies zones. Moreover, mostly earthquakes occurred in high Poisson ratio zones, especially at shallower depths. Since high Poisson's ratio anomalies are usually correspondent to weaker zones, and mostly earthquakes are occurred at the shallow depths. Due to this reason, the strength should be lower, so that the seismic energy to moment ratio is also lower.

Thallium Bromide as an Alternative Material for Room-Temperature Gamma-Ray Spectroscopy and Imaging

NASA Astrophysics Data System (ADS)

Koehler, William

Thallium bromide is an attractive material for room-temperature gamma-ray spectroscopy and imaging because of its high atomic number (Tl: 81, Br: 35), high density (7.56 g/cm3), and a wide bandgap (2.68 eV). In this work, 5 mm thick TlBr detectors achieved 0.94% FWHM at 662 keV for all single-pixel events and 0.72% FWHM at 662 keV from the best pixel and depth using three-dimensional position sensing technology. However, these results were limited to stable operation at -20°C. After days to months of room-temperature operation, ionic conduction caused these devices to fail. Depth-dependent signal analysis was used to isolate room-temperature degradation effects to within 0.5 mm of the anode surface. This was verified by refabricating the detectors after complete failure at room temperature; after refabrication, similar performance and functionality was recovered. As part of this work, the improvement in electron drift velocity and energy resolution during conditioning at -20°C was quantified. A new method was developed to measure the impurity concentration without changing the gamma ray measurement setup. The new method was used to show that detector conditioning was likely the result of charged impurities drifting out of the active volume. This space charge reduction then caused a more stable and uniform electric field. Additionally, new algorithms were developed to remove hole contributions in high-hole-mobility detectors to improve depth reconstruction. These algorithms improved the depth reconstruction (accuracy) without degrading the depth uncertainty (precision). Finally, spectroscopic and imaging performance of new 11 x 11 pixelated-anode TlBr detectors was characterized. The larger detectors were used to show that energy resolution can be improved by identifying photopeak events from their Tl characteristic x-rays.

Innovative High-Accuracy Lidar Bathymetric Technique for the Frequent Measurement of River Systems

NASA Astrophysics Data System (ADS)

Gisler, A.; Crowley, G.; Thayer, J. P.; Thompson, G. S.; Barton-Grimley, R. A.

2015-12-01

Lidar (light detection and ranging) provides absolute depth and topographic mapping capability compared to other remote sensing methods, which is useful for mapping rapidly changing environments such as riverine systems. Effectiveness of current lidar bathymetric systems is limited by the difficulty in unambiguously identifying backscattered lidar signals from the water surface versus the bottom, limiting their depth resolution to 0.3-0.5 m. Additionally these are large, bulky systems that are constrained to expensive aircraft-mounted platforms and use waveform-processing techniques requiring substantial computation time. These restrictions are prohibitive for many potential users. A novel lidar device has been developed that allows for non-contact measurements of water depth down to 1 cm with an accuracy and precision of < 1 cm by exploiting the polarization properties of the light-surface interaction. This system can transition seamlessly from ranging over land to shallow to deep water allowing for shoreline charting, measuring water volume, mapping bottom topology, and identifying submerged objects. The scalability of the technique opens up the ability for handheld or UAS-mounted lidar bathymetric systems, which provides for potential applications currently unavailable to the community. The high laser pulse repetition rate allows for very fine horizontal resolution while the photon-counting technique permits real-time depth measurement and object detection. The enhanced measurement capability, portability, scalability, and relatively low-cost creates the opportunity to perform frequent high-accuracy monitoring and measuring of aquatic environments which is crucial for understanding how rivers evolve over many timescales. Results from recent campaigns measuring water depth in flowing creeks and murky ponds will be presented which demonstrate that the method is not limited by rough water surfaces and can map underwater topology through moderately turbid water.

Innovative Technique for High-Accuracy Remote Monitoring of Surface Water

NASA Astrophysics Data System (ADS)

Gisler, A.; Barton-Grimley, R. A.; Thayer, J. P.; Crowley, G.

2016-12-01

Lidar (light detection and ranging) provides absolute depth and topographic mapping capability compared to other remote sensing methods, which is useful for mapping rapidly changing environments such as riverine systems and agricultural waterways. Effectiveness of current lidar bathymetric systems is limited by the difficulty in unambiguously identifying backscattered lidar signals from the water surface versus the bottom, limiting their depth resolution to 0.3-0.5 m. Additionally these are large, bulky systems that are constrained to expensive aircraft-mounted platforms and use waveform-processing techniques requiring substantial computation time. These restrictions are prohibitive for many potential users. A novel lidar device has been developed that allows for non-contact measurements of water depth down to 1 cm with an accuracy and precision of < 1 cm by exploiting the polarization properties of the light-surface interaction. This system can transition seamlessly from ranging over land to shallow to deep water allowing for shoreline charting, measuring water volume, mapping bottom topology, and identifying submerged objects. The scalability of the technique opens up the ability for handheld or UAS-mounted lidar bathymetric systems, which provides for potential applications currently unavailable to the community. The high laser pulse repetition rate allows for very fine horizontal resolution while the photon-counting technique permits real-time depth measurement and object detection. The enhanced measurement capability, portability, scalability, and relatively low-cost creates the opportunity to perform frequent high-accuracy monitoring and measuring of aquatic environments which is crucial for monitoring water resources on fast timescales. Results from recent campaigns measuring water depth in flowing creeks and murky ponds will be presented which demonstrate that the method is not limited by rough water surfaces and can map underwater topology through moderately turbid water.

Positional calibrations of the germanium double sided strip detectors for the Compton spectrometer and imager

NASA Astrophysics Data System (ADS)

Lowell, A.; Boggs, S.; Chiu, J. L.; Kierans, C.; McBride, S.; Tseng, C. H.; Zoglauer, A.; Amman, M.; Chang, H. K.; Jean, P.; Lin, C. H.; Sleator, C.; Tomsick, J.; von Ballmoos, P.; Yang, C. Y.

2016-08-01

The Compton Spectrometer and Imager (COSI) is a medium energy gamma ray (0.2 - 10 MeV) imager designed to observe high-energy processes in the universe from a high altitude balloon platform. At its core, COSI is comprised of twelve high purity germanium double sided strip detectors which measure particle interaction energies and locations with high precision. This manuscript focuses on the positional calibrations of the COSI detectors. The interaction depth in a detector is inferred from the charge collection time difference between the two sides of the detector. We outline our previous approach to this depth calibration and also describe a new approach we have recently developed. Two dimensional localization of interactions along the faces of the detector (x and y) is straightforward, as the location of the triggering strips is simply used. However, we describe a possible technique to improve the x/y position resolution beyond the detector strip pitch of 2 mm. With the current positional calibrations, COSI achieves an angular resolution of 5.6 +/- 0.1 degrees at 662 keV, close to our expectations from simulations.

Study of satellite retrieved aerosol optical depth spatial resolution effect on particulate matter concentration prediction

NASA Astrophysics Data System (ADS)

Strandgren, J.; Mei, L.; Vountas, M.; Burrows, J. P.; Lyapustin, A.; Wang, Y.

2014-10-01

The Aerosol Optical Depth (AOD) spatial resolution effect is investigated for the linear correlation between satellite retrieved AOD and ground level particulate matter concentrations (PM2.5). The Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm was developed for the Moderate Resolution Imaging Spectroradiometer (MODIS) for obtaining AOD with a high spatial resolution of 1 km and provides a good dataset for the study of the AOD spatial resolution effect on the particulate matter concentration prediction. 946 Environmental Protection Agency (EPA) ground monitoring stations across the contiguous US have been used to investigate the linear correlation between AOD and PM2.5 using AOD at different spatial resolutions (1, 3 and 10 km) and for different spatial scales (urban scale, meso-scale and continental scale). The main conclusions are: (1) for both urban, meso- and continental scale the correlation between PM2.5 and AOD increased significantly with increasing spatial resolution of the AOD, (2) the correlation between AOD and PM2.5 decreased significantly as the scale of study region increased for the eastern part of the US while vice versa for the western part of the US, (3) the correlation between PM2.5 and AOD is much more stable and better over the eastern part of the US compared to western part due to the surface characteristics and atmospheric conditions like the fine mode fraction.

Adaptive optics improves multiphoton super-resolution imaging

NASA Astrophysics Data System (ADS)

Zheng, Wei; Wu, Yicong; Winter, Peter; Shroff, Hari

2018-02-01

Three dimensional (3D) fluorescence microscopy has been essential for biological studies. It allows interrogation of structure and function at spatial scales spanning the macromolecular, cellular, and tissue levels. Critical factors to consider in 3D microscopy include spatial resolution, signal-to-noise (SNR), signal-to-background (SBR), and temporal resolution. Maintaining high quality imaging becomes progressively more difficult at increasing depth (where optical aberrations, induced by inhomogeneities of refractive index in the sample, degrade resolution and SNR), and in thick or densely labeled samples (where out-of-focus background can swamp the valuable, in-focus-signal from each plane). In this report, we introduce our new instrumentation to address these problems. A multiphoton structured illumination microscope was simply modified to integrate an adpative optics system for optical aberrations correction. Firstly, the optical aberrations are determined using direct wavefront sensing with a nonlinear guide star and subsequently corrected using a deformable mirror, restoring super-resolution information. We demonstrate the flexibility of our adaptive optics approach on a variety of semi-transparent samples, including bead phantoms, cultured cells in collagen gels and biological tissues. The performance of our super-resolution microscope is improved in all of these samples, as peak intensity is increased (up to 40-fold) and resolution recovered (up to 176+/-10 nm laterally and 729+/-39 nm axially) at depths up to 250 μm from the coverslip surface.

A 2D/3D hybrid integral imaging display by using fast switchable hexagonal liquid crystal lens array

NASA Astrophysics Data System (ADS)

Lee, Hsin-Hsueh; Huang, Ping-Ju; Wu, Jui-Yi; Hsieh, Po-Yuan; Huang, Yi-Pai

2017-05-01

The paper proposes a new display which could switch 2D and 3D images on a monitor, and we call it as Hybrid Display. In 3D display technologies, the reduction of image resolution is still an important issue. The more angle information offer to the observer, the less spatial resolution would offer to image resolution because of the fixed panel resolution. Take it for example, in the integral photography system, the part of image without depth, like background, will reduce its resolution by transform from 2D to 3D image. Therefore, we proposed a method by using liquid crystal component to quickly switch the 2D image and 3D image. Meanwhile, the 2D image is set as a background to compensate the resolution.. In the experiment, hexagonal liquid crystal lens array would be used to take the place of fixed lens array. Moreover, in order to increase lens power of the hexagonal LC lens array, we applied high resistance (Hi-R) layer structure on the electrode. Hi-R layer would make the gradient electric field and affect the lens profile. Also, we use panel with 801 PPI to display the integral image in our system. Hence, the consequence of full resolution 2D background with the 3D depth object forms the Hybrid Display.

Large depth high-precision FMCW tomography using a distributed feedback laser array

NASA Astrophysics Data System (ADS)

DiLazaro, Thomas; Nehmetallah, George

2018-02-01

Swept-source optical coherence tomography (SS-OCT) has been widely employed in the medical industry for the high resolution imaging of subsurface biological structures. SS-OCT typically exhibits axial resolutions on the order of tens of microns at speeds of hundreds of kilohertz. Using the same coherent heterodyne detection technique, frequency modulated continuous wave (FMCW) ladar has been used for highly precise ranging for distances up to kilometers. Distributed feedback lasers (DFBs) have been used as a simple and inexpensive source for FMCW ranging. Here, we use a bandwidth-combined DFB array for sub-surface volume imaging at a 27 μm axial resolution over meters of distance. 2D and 3D tomographic images of several semi-transparent and diffuse objects at distances up to 10 m will be presented.

Basic performance of Mg co-doped new scintillator used for TOF-DOI-PET systems

NASA Astrophysics Data System (ADS)

Kobayashi, Takahiro; Yamamoto, Seiichi; Okumura, Satoshi; Yeom, Jung Yeol; Kamada, Kei; Yoshikawa, Akira

2017-01-01

Phoswich depth-of-interaction (DOI) detectors utilizing multiple scintillators with different decay time are a useful device for developing a high spatial resolution, high sensitivity PET scanner. However, in order to apply pulse shape discrimination (PSD), there are not many combinations of scintillators for which phoswich technique can be implemented. Ce doped Gd3Ga3Al2O12 (GFAG) is a recently developed scintillator with a fast decay time. This scintillator is similar to Ce doped Gd3Al2Ga3O12 (GAGG), which is a promising scintillator for PET detector with high light yield. By stacking these scintillators, it may be possible to realize a high spatial resolution and high timing resolution phoswich DOI detector. Such phoswich DOI detector may be applied to time-of-flight (TOF) systems with high timing performance. Therefore, in this study, we tested the basic performance of the new scintillator -GFAG for use in a TOF phoswich detector. The measured decay time of a GFAG element of 2.9 mmx2.9 mmx10 mm in dimension, which was optically coupled to a photomultiplier tube (PMT), was faster (66 ns) than that of same sized GAGG (103 ns). The energy resolution of the GFAG element was 5.7% FWHM which was slightly worse than that of GAGG with 4.9% FWHM for 662 keV gamma photons without saturation correction. Then we assembled the GFAG and the GAGG crystals in the depth direction to form a 20 mm long phoswich element (GFAG/GAGG). By pulse shape analysis, the two types of scintillators were clearly resolved. Measured timing resolution of a pair of opposing GFAG/GAGG phoswich scintillator coupled to Silicon Photomultipliers (Si-PM) was good with coincidence resolving time of 466 ps FWHM. These results indicate that the GFAG combined with GAGG can be a candidate for TOF-DOI-PET systems.

Earthquake-ponded sediments as a high-resolution archive of Anthropocene climate change on the Fuyun Fault (Xinjiang, China).

NASA Astrophysics Data System (ADS)

Chua, Stephen; Gouramanis, Chris; Etchebes, Marie; Klinger, Yann; Gao, Mingxing; Switzer, Adam; Tapponnier, Paul

2016-04-01

High-resolution, late-Holocene climate patterns in arid central Asia, in particular the behaviour of the Asian Monsoon and occurrences of precipitation events, are not yet fully understood. In particular, few high-resolution palaeoenvironmental and palaeoclimate studies are available from the Junggar-Altay region in the Xinjiang Province, northwestern China. This area is tectonically active and the last large earthquake (Mw 7.9) occurred along the Fuyun strike-slip fault in 1931, resulting in ˜6m of right-lateral movement. South of the epicentre at Karaxingar, this earthquake resulted in the construction of large scarp-bounded ponds (46o43'N, 89o55'E) now filled with sediment. Sediment samples were collected every centimetre at a two-meter deep trench where the main pond was the deepest. The majority of the AMS 14C ages of charcoal and plant fibre samples are modern (56±34 to 171±34 yr BP) with the exception of a few much older carbon (842±26 to 2017±26 yr BP) at the base of the trench. The post-1931 age of the pond is validated by the 137Cs and 210Pb age-depth chronology. Each sediment sample was analysed for organic, carbonate and clastic contents and particle-size. This high-resolution analysis revealed eleven upward-fining sequences, with three prominent grain size peaks at depths of 1.7m, 0.95m and 0.6m below ground surface, suggesting three major modern precipitation events. The 11 grain-size peaks since 1931 in the pond coincide with 11 periods of increased precipitation measured in high-elevation tree-ring records ˜50 km north of the pond. Thus, low-altitude post-seismic sedimentary depocentres provide excellent high-resolution palaeoclimate archives that can fill a significant data gap where other proxy records are not available.

Cross-correlation photothermal optical coherence tomography with high effective resolution.

PubMed

Tang, Peijun; Liu, Shaojie; Chen, Junbo; Yuan, Zhiling; Xie, Bingkai; Zhou, Jianhua; Tang, Zhilie

2017-12-01

We developed a cross-correlation photothermal optical coherence tomography (CC-PTOCT) system for photothermal imaging with high lateral and axial resolution. The CC-PTOCT system consists of a phase-sensitive OCT system, a modulated pumping laser, and a digital cross-correlator. The pumping laser was used to induce the photothermal effect in the sample, causing a slight phase modulation of the OCT signals. A spatial phase differentiation method was employed to reduce phase accumulation. The noise brought by the phase differentiation method and the strong background noise were suppressed efficiently by the cross-correlator, which was utilized to extract the photothermal signals from the modulated signals. Combining the cross-correlation technique with spatial phase differentiation can improve both lateral and axial resolution of the PTOCT imaging system. Clear photothermal images of blood capillaries of a mouse ear in vivo were successfully obtained with high lateral and axial resolution. The experimental results demonstrated that this system can enhance the effective transverse resolution, effective depth resolution, and contrast of the PTOCT image effectively, aiding the ongoing development of the accurate 3D functional imaging.

NanoSIMS Imaging Alternation Layers of a Leached SON68 Glass Via A FIB-made Wedged Crater

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Yi-Chung; Schreiber, Daniel K.; Neeway, James J.

2014-11-01

Currently, nuclear wastes are commonly immobilized into glasses because of their long-term durability. Exposure to water for long periods of time, however, will eventually corrode the waste form and is the leading potential avenue for radionuclide release into the environment. Because such slow processes cannot be experimentally tested, the prediction of release requires a thorough understanding the mechanisms governing glass corrosion. In addition, due to the exceptional durability of glass, much of the testing must be performed on high-surface-area powders. A technique that can provide accurate compositional profiles with very precise depth resolution for non-flat samples would be a majormore » benefit to the field. Time-of-flight secondary ion mass spectrometry (ToF-SIMS) depth profiling is an excellent tool that has long been used to examine corrosion layers of glass. The roughness of the buried corrosion layers, however, causes the corresponding SIMS depth profiles to exhibit erroneously wide interfaces. In this study, NanoSIMS was used to image the cross-section of the corrosion layers of a leached SON68 glass sample. A wedged crater was prepared by a focused ion beam (FIB) instrument to obtain a 5× improvement in depth resolution for NanoSIMS measurements. This increase in resolution allowed us to confirm that the breakdown of the silica glass network is further from the pristine glass than a second dissolution front for boron, another glass former. The existence of these two distinct interfaces, separated by only ~20 nm distance in depth, was not apparent by traditional ToF-SIMS depth profiling but has been confirmed also by atom probe tomography. This novel sample geometry will be a major benefit to efficient NanoSIMS sampling of irregular interfaces at the nanometer scale that would otherwise be obscured within ToF-SIMS depth profiles.« less

A method of extending the depth of focus of the high-resolution X-ray imaging system employing optical lens and scintillator: a phantom study.

PubMed

Li, Guang; Luo, Shouhua; Yan, Yuling; Gu, Ning

2015-01-01

The high-resolution X-ray imaging system employing synchrotron radiation source, thin scintillator, optical lens and advanced CCD camera can achieve a resolution in the range of tens of nanometers to sub-micrometer. Based on this advantage, it can effectively image tissues, cells and many other small samples, especially the calcification in the vascular or in the glomerulus. In general, the thickness of the scintillator should be several micrometers or even within nanometers because it has a big relationship with the resolution. However, it is difficult to make the scintillator so thin, and additionally thin scintillator may greatly reduce the efficiency of collecting photons. In this paper, we propose an approach to extend the depth of focus (DOF) to solve these problems. We develop equation sets by deducing the relationship between the high-resolution image generated by the scintillator and the degraded blur image due to defect of focus first, and then we adopt projection onto convex sets (POCS) and total variation algorithm to get the solution of the equation sets and to recover the blur image. By using a 20 μm thick unmatching scintillator to replace the 1 μm thick matching one, we simulated a high-resolution X-ray imaging system and got a degraded blur image. Based on the algorithm proposed, we recovered the blur image and the result in the experiment showed that the proposed algorithm has good performance on the recovery of image blur caused by unmatching thickness of scintillator. The method proposed is testified to be able to efficiently recover the degraded image due to defect of focus. But, the quality of the recovery image especially of the low contrast image depends on the noise level of the degraded blur image, so there is room for improving and the corresponding denoising algorithm is worthy for further study and discussion.

A method of extending the depth of focus of the high-resolution X-ray imaging system employing optical lens and scintillator: a phantom study

PubMed Central

2015-01-01

Background The high-resolution X-ray imaging system employing synchrotron radiation source, thin scintillator, optical lens and advanced CCD camera can achieve a resolution in the range of tens of nanometers to sub-micrometer. Based on this advantage, it can effectively image tissues, cells and many other small samples, especially the calcification in the vascular or in the glomerulus. In general, the thickness of the scintillator should be several micrometers or even within nanometers because it has a big relationship with the resolution. However, it is difficult to make the scintillator so thin, and additionally thin scintillator may greatly reduce the efficiency of collecting photons. Methods In this paper, we propose an approach to extend the depth of focus (DOF) to solve these problems. We develop equation sets by deducing the relationship between the high-resolution image generated by the scintillator and the degraded blur image due to defect of focus first, and then we adopt projection onto convex sets (POCS) and total variation algorithm to get the solution of the equation sets and to recover the blur image. Results By using a 20 μm thick unmatching scintillator to replace the 1 μm thick matching one, we simulated a high-resolution X-ray imaging system and got a degraded blur image. Based on the algorithm proposed, we recovered the blur image and the result in the experiment showed that the proposed algorithm has good performance on the recovery of image blur caused by unmatching thickness of scintillator. Conclusions The method proposed is testified to be able to efficiently recover the degraded image due to defect of focus. But, the quality of the recovery image especially of the low contrast image depends on the noise level of the degraded blur image, so there is room for improving and the corresponding denoising algorithm is worthy for further study and discussion. PMID:25602532

Lunar Observer Laser Altimeter observations for lunar base site selection

NASA Technical Reports Server (NTRS)

Garvin, James B.; Bufton, Jack L.

1992-01-01

One of the critical datasets for optimal selection of future lunar landing sites is local- to regional-scale topography. Lunar base site selection will require such data for both engineering and scientific operations purposes. The Lunar Geoscience Orbiter or Lunar Observer is the ideal precursory science mission from which to obtain this required information. We suggest that a simple laser altimeter instrument could be employed to measure local-scale slopes, heights, and depths of lunar surface features important to lunar base planning and design. For this reason, we have designed and are currently constructing a breadboard of a Lunar Observer Laser Altimeter (LOLA) instrument capable of acquiring contiguous-footprint topographic profiles with both 30-m and 300-m along-track resolution. This instrument meets all the severe weight, power, size, and data rate limitations imposed by Observer-class spacecraft. In addition, LOLA would be capable of measuring the within-footprint vertical roughness of the lunar surface, and the 1.06-micron relative surface reflectivity at normal incidence. We have used airborne laser altimeter data for a few representative lunar analog landforms to simulate and analyze LOLA performance in a 100-km lunar orbit. We demonstrate that this system in its highest resolution mode (30-m diameter footprints) would quantify the topography of all but the very smallest lunar landforms. At its global mapping resolution (300-m diameter footprints), LOLA would establish the topographic context for lunar landing site selection by providing the basis for constructing a 1-2 km spatial resolution global, geodetic topographic grid that would contain a high density of observations (e.g., approximately 1000 observations per each 1 deg by 1 deg cell at the lunar equator). The high spatial and vertical resolution measurements made with a LOLA-class instrument on a precursory Lunar Observer would be highly synergistic with high-resolution imaging datasets, and will allow for direct quantification of critical slopes, heights, and depths of features visible in images of potential lunar base sites.

Using High Frequency Focused Water-Coupled Ultrasound for 3-D Surface Depression Profiling

NASA Technical Reports Server (NTRS)

Roth, Don J.; Whalen, Mike F.; Hendricks, J. Lynne; Bodis, James R.

1999-01-01

Surface topography is an important variable in the performance of many industrial components and is normally measured with diamond-tip profilometry over a small area or using optical scattering methods for larger area measurement. A prior study was performed demonstrating that focused air-coupled ultrasound at 1 MHz was capable of profiling surfaces with 25 micron depth resolution and 400 micron lateral resolution over a 1.4 mm depth range. In this article, the question of whether higher-frequency focused water-coupled ultrasound can improve on these specifications is addressed. 10 and 25 MHz focused ultrasonic transducers were employed in the water-coupled mode. Time-of-flight images of the sample surface were acquired and converted to depth / surface profile images using the simple relation (d = V*t/2) between distance (d), time-of-flight (t), and the velocity of sound in water (V). Results are compared for the two frequencies used and with those from the 1 MHz air-coupled configuration.

Front-end circuit for position sensitive silicon and vacuum tube photomultipliers with gain control and depth of interaction measurement

NASA Astrophysics Data System (ADS)

Herrero, Vicente; Colom, Ricardo; Gadea, Rafael; Lerche, Christoph W.; Cerdá, Joaquín; Sebastiá, Ángel; Benlloch, José M.

2007-06-01

Silicon Photomultipliers, though still under development for mass production, may be an alternative to traditional Vacuum Photomultipliers Tubes (VPMT). As a consequence, electronic front-ends initially designed for VPMT will need to be modified. In this simulation, an improved architecture is presented which is able to obtain impact position and depth of interaction of a gamma ray within a continuous scintillation crystal, using either kind of PM. A current sensitive preamplifier stage with individual gain adjustment interfaces the multi-anode PM outputs with a current division resistor network. The preamplifier stage allows to improve front-end processing delay and temporal resolution behavior as well as to increase impact position calculation resolution. Depth of interaction (DOI) is calculated from the width of the scintillation light distribution, which is related to the sum of voltages in resistor network input nodes. This operation is done by means of a high-speed current mode scheme.

Evaluating scale and roughness effects in urban flood modelling using terrestrial LIDAR data

NASA Astrophysics Data System (ADS)

Ozdemir, H.; Sampson, C. C.; de Almeida, G. A. M.; Bates, P. D.

2013-10-01

This paper evaluates the results of benchmark testing a new inertial formulation of the St. Venant equations, implemented within the LISFLOOD-FP hydraulic model, using different high resolution terrestrial LiDAR data (10 cm, 50 cm and 1 m) and roughness conditions (distributed and composite) in an urban area. To examine these effects, the model is applied to a hypothetical flooding scenario in Alcester, UK, which experienced surface water flooding during summer 2007. The sensitivities of simulated water depth, extent, arrival time and velocity to grid resolutions and different roughness conditions are analysed. The results indicate that increasing the terrain resolution from 1 m to 10 cm significantly affects modelled water depth, extent, arrival time and velocity. This is because hydraulically relevant small scale topography that is accurately captured by the terrestrial LIDAR system, such as road cambers and street kerbs, is better represented on the higher resolution DEM. It is shown that altering surface friction values within a wide range has only a limited effect and is not sufficient to recover the results of the 10 cm simulation at 1 m resolution. Alternating between a uniform composite surface friction value (n = 0.013) or a variable distributed value based on land use has a greater effect on flow velocities and arrival times than on water depths and inundation extent. We conclude that the use of extra detail inherent in terrestrial laser scanning data compared to airborne sensors will be advantageous for urban flood modelling related to surface water, risk analysis and planning for Sustainable Urban Drainage Systems (SUDS) to attenuate flow.

Evaluating scale and roughness effects in urban flood modelling using terrestrial LIDAR data

NASA Astrophysics Data System (ADS)

Ozdemir, H.; Sampson, C. C.; de Almeida, G. A. M.; Bates, P. D.

2013-05-01

This paper evaluates the results of benchmark testing a new inertial formulation of the de St. Venant equations, implemented within the LISFLOOD-FP hydraulic model, using different high resolution terrestrial LiDAR data (10 cm, 50 cm and 1 m) and roughness conditions (distributed and composite) in an urban area. To examine these effects, the model is applied to a hypothetical flooding scenario in Alcester, UK, which experienced surface water flooding during summer 2007. The sensitivities of simulated water depth, extent, arrival time and velocity to grid resolutions and different roughness conditions are analysed. The results indicate that increasing the terrain resolution from 1 m to 10 cm significantly affects modelled water depth, extent, arrival time and velocity. This is because hydraulically relevant small scale topography that is accurately captured by the terrestrial LIDAR system, such as road cambers and street kerbs, is better represented on the higher resolution DEM. It is shown that altering surface friction values within a wide range has only a limited effect and is not sufficient to recover the results of the 10 cm simulation at 1 m resolution. Alternating between a uniform composite surface friction value (n = 0.013) or a variable distributed value based on land use has a greater effect on flow velocities and arrival times than on water depths and inundation extent. We conclude that the use of extra detail inherent in terrestrial laser scanning data compared to airborne sensors will be advantageous for urban flood modelling related to surface water, risk analysis and planning for Sustainable Urban Drainage Systems (SUDS) to attenuate flow.

EVOLUTION OF NEAR-SURFACE FLOWS INFERRED FROM HIGH-RESOLUTION RING-DIAGRAM ANALYSIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bogart, Richard S.; Baldner, Charles S.; Basu, Sarbani

2015-07-10

Ring-diagram analysis of acoustic waves observed at the photosphere can provide a relatively robust determination of the sub-surface flows at a particular time under a particular region. The depth of penetration of the waves is related to the size of the region, hence the depth extent of the measured flows is inversely proportional to the spatial resolution. Most ring-diagram analysis has focused on regions of extent ∼15° (180 Mm) or more in order to provide reasonable mode sets for inversions. Helioseismic and Magnetic Imager (HMI) data analysis also provides a set of ring fit parameters on a scale three timesmore » smaller. These provide flow estimates for the outer 1% (7 Mm) of the Sun only, with very limited depth resolution, but with spatial resolution adequate to map structures potentially associated with the belts and regions of magnetic activity. There are a number of systematic effects affecting the determination of flows from a local helioseismic analysis of regions over different parts of the observable disk, and not all of them are well understood. In this study we characterize those systematic effects with higher spatial resolution so that they may be accounted for more effectively in mapping the temporal and spatial evolution of the flows. Leaving open the question of the mean structure of the global meridional circulation and the differential rotation, we describe the near-surface flow anomalies in time and latitude corresponding to the torsional oscillation pattern in differential rotation and analogous patterns in the meridional cell structure as observed by the Solar Dynamics Observatory/HMI.« less

Depth-Dependent Glycosaminoglycan Concentration in Articular Cartilage by Quantitative Contrast-Enhanced Micro–Computed Tomography

PubMed Central

Mittelstaedt, Daniel

2015-01-01

Objective A quantitative contrast-enhanced micro–computed tomography (qCECT) method was developed to investigate the depth dependency and heterogeneity of the glycosaminoglycan (GAG) concentration of ex vivo cartilage equilibrated with an anionic radiographic contrast agent, Hexabrix. Design Full-thickness fresh native (n = 19 in 3 subgroups) and trypsin-degraded (n = 6) articular cartilage blocks were imaged using micro–computed tomography (μCT) at high resolution (13.4 μm3) before and after equilibration with various Hexabrix bathing concentrations. The GAG concentration was calculated depth-dependently based on Gibbs-Donnan equilibrium theory. Analysis of variance with Tukey’s post hoc was used to test for statistical significance (P < 0.05) for effect of Hexabrix bathing concentration, and for differences in bulk and zonal GAG concentrations individually and compared between native and trypsin-degraded cartilage. Results The bulk GAG concentration was calculated to be 74.44 ± 6.09 and 11.99 ± 4.24 mg/mL for native and degraded cartilage, respectively. A statistical difference was demonstrated for bulk and zonal GAG between native and degraded cartilage (P < 0.032). A statistical difference was not demonstrated for bulk GAG when comparing Hexabrix bathing concentrations (P > 0.3214) for neither native nor degraded cartilage. Depth-dependent GAG analysis of native cartilage revealed a statistical difference only in the radial zone between 30% and 50% Hexabrix bathing concentrations. Conclusions This nondestructive qCECT methodology calculated the depth-dependent GAG concentration for both native and trypsin-degraded cartilage at high spatial resolution. qCECT allows for more detailed understanding of the topography and depth dependency, which could help diagnose health, degradation, and repair of native and contrived cartilage. PMID:26425259

How Much Water is in That Snowpack? Improving Basin-wide Snow Water Equivalent Estimates from the Airborne Snow Observatory

NASA Astrophysics Data System (ADS)

Bormann, K.; Painter, T. H.; Marks, D. G.; Kirchner, P. B.; Winstral, A. H.; Ramirez, P.; Goodale, C. E.; Richardson, M.; Berisford, D. F.

2014-12-01

In the western US, snowmelt from the mountains contribute the vast majority of fresh water supply, in an otherwise dry region. With much of California currently experiencing extreme drought, it is critical for water managers to have accurate basin-wide estimations of snow water content during the spring melt season. At the forefront of basin-scale snow monitoring is the Jet Propulsion Laboratory's Airborne Snow Observatory (ASO). With combined LiDAR /spectrometer instruments and weekly flights over key basins throughout California, the ASO suite is capable of retrieving high-resolution basin-wide snow depth and albedo observations. To make best use of these high-resolution snow depths, spatially distributed snow density data are required to leverage snow water equivalent (SWE) from the measured depths. Snow density is a spatially and temporally variable property and is difficult to estimate at basin scales. Currently, ASO uses a physically based snow model (iSnobal) to resolve distributed snow density dynamics across the basin. However, there are issues with the density algorithms in iSnobal, particularly with snow depths below 0.50 m. This shortcoming limited the use of snow density fields from iSnobal during the poor snowfall year of 2014 in the Sierra Nevada, where snow depths were generally low. A deeper understanding of iSnobal model performance and uncertainty for snow density estimation is required. In this study, the model is compared to an existing climate-based statistical method for basin-wide snow density estimation in the Tuolumne basin in the Sierra Nevada and sparse field density measurements. The objective of this study is to improve the water resource information provided to water managers during ASO operation in the future by reducing the uncertainty introduced during the snow depth to SWE conversion.

Combining low- to high-resolution transit spectroscopy of HD 189733b. Linking the troposphere and the thermosphere of a hot gas giant

NASA Astrophysics Data System (ADS)

Pino, Lorenzo; Ehrenreich, David; Wyttenbach, Aurélien; Bourrier, Vincent; Nascimbeni, Valerio; Heng, Kevin; Grimm, Simon; Lovis, Christophe; Malik, Matej; Pepe, Francesco; Piotto, Giampaolo

2018-04-01

Space-borne low- to medium-resolution (ℛ 102-103) and ground-based high-resolution spectrographs (ℛ 105) are commonly used to obtain optical and near infrared transmission spectra of exoplanetary atmospheres. In this wavelength range, space-borne observations detect the broadest spectral features (alkali doublets, molecular bands, scattering, etc.), while high-resolution, ground-based observations probe the sharpest features (cores of the alkali lines, molecular lines). The two techniques differ by several aspects. (1) The line spread function of ground-based observations is 103 times narrower than for space-borne observations; (2) Space-borne transmission spectra probe up to the base of thermosphere (P ≳ 10-6 bar), while ground-based observations can reach lower pressures (down to 10-11 bar) thanks to their high resolution; (3) Space-borne observations directly yield the transit depth of the planet, while ground-based observations can only measure differences in the apparent size of the planet at different wavelengths. These differences make it challenging to combine both techniques. Here, we develop a robust method to compare theoretical models with observations at different resolutions. We introduce πη, a line-by-line 1D radiative transfer code to compute theoretical transmission spectra over a broad wavelength range at very high resolution (ℛ 106, or Δλ 0.01 Å). An hybrid forward modeling/retrieval optimization scheme is devised to deal with the large computational resources required by modeling a broad wavelength range 0.3-2 μm at high resolution. We apply our technique to HD 189733b. In this planet, HST observations reveal a flattened spectrum due to scattering by aerosols, while high-resolution ground-based HARPS observations reveal sharp features corresponding to the cores of sodium lines. We reconcile these apparent contrasting results by building models that reproduce simultaneously both data sets, from the troposphere to the thermosphere. We confirm: (1) the presence of scattering by tropospheric aerosols; (2) that the sodium core feature is of thermospheric origin. When we take into account the presence of aerosols, the large contrast of the core of the sodium lines measured by HARPS indicates a temperature of up to 10 000K in the thermosphere, higher than what reported in the literature. We also show that the precise value of the thermospheric temperature is degenerate with the relative optical depth of sodium, controlled by its abundance, and of the aerosol deck.

Rayleigh-wave mode separation by high-resolution linear radon transform

USGS Publications Warehouse

Luo, Y.; Xia, J.; Miller, R.D.; Xu, Y.; Liu, J.; Liu, Q.

2009-01-01

Multichannel analysis of surface waves (MASW) method is an effective tool for obtaining vertical shear wave profiles from a single non-invasive measurement. One key step of the MASW method is generation of a dispersion image and extraction of a reliable dispersion curve from raw multichannel shot records. Because different Rayleigh-wave modes normally interfere with each other in the time and space domain, it is necessary to perform mode separation and reconstruction to increase the accuracy of phase velocities determined from a dispersion image. In this paper, we demonstrate the effectiveness of high-resolution linear Radon transform (LRT) as a means of separating and reconstructing multimode, dispersive Rayleigh-wave energy. We first introduce high-resolution LRT methods and Rayleigh-wave mode separation using high-resolution LRT. Next, we use synthetic data and a real-world example to demonstrate the effectiveness of Rayleigh-wave mode separation using high-resolution LRT. Our synthetic and real-world results demonstrate that (1) high-resolution LRT successfully separates and reconstructs multimode dispersive Rayleigh-wave energy with high resolution allowing the multimode energy to be more accurately determined. The horizontal resolution of the Rayleigh-wave method can be increased by extraction of dispersion curves from a pair of traces in the mode-separated shot gather and (2) multimode separation and reconstruction expand the usable frequency range of higher mode dispersive energy, which increases the depth of investigation and provides a means for accurately determining cut-off frequencies. ?? 2009 The Authors Journal compilation ?? 2009 RAS.

A multi-resolution approach to electromagnetic modeling.

NASA Astrophysics Data System (ADS)

Cherevatova, M.; Egbert, G. D.; Smirnov, M. Yu

2018-04-01

We present a multi-resolution approach for three-dimensional magnetotelluric forward modeling. Our approach is motivated by the fact that fine grid resolution is typically required at shallow levels to adequately represent near surface inhomogeneities, topography, and bathymetry, while a much coarser grid may be adequate at depth where the diffusively propagating electromagnetic fields are much smoother. This is especially true for forward modeling required in regularized inversion, where conductivity variations at depth are generally very smooth. With a conventional structured finite-difference grid the fine discretization required to adequately represent rapid variations near the surface are continued to all depths, resulting in higher computational costs. Increasing the computational efficiency of the forward modeling is especially important for solving regularized inversion problems. We implement a multi-resolution finite-difference scheme that allows us to decrease the horizontal grid resolution with depth, as is done with vertical discretization. In our implementation, the multi-resolution grid is represented as a vertical stack of sub-grids, with each sub-grid being a standard Cartesian tensor product staggered grid. Thus, our approach is similar to the octree discretization previously used for electromagnetic modeling, but simpler in that we allow refinement only with depth. The major difficulty arose in deriving the forward modeling operators on interfaces between adjacent sub-grids. We considered three ways of handling the interface layers and suggest a preferable one, which results in similar accuracy as the staggered grid solution, while retaining the symmetry of coefficient matrix. A comparison between multi-resolution and staggered solvers for various models show that multi-resolution approach improves on computational efficiency without compromising the accuracy of the solution.

Research on the underwater target imaging based on the streak tube laser lidar

NASA Astrophysics Data System (ADS)

Cui, Zihao; Tian, Zhaoshuo; Zhang, Yanchao; Bi, Zongjie; Yang, Gang; Gu, Erdan

2018-03-01

A high frame rate streak tube imaging lidar (STIL) for real-time 3D imaging of underwater targets is presented in this paper. The system uses 532nm pulse laser as the light source, the maximum repetition rate is 120Hz, and the pulse width is 8ns. LabVIEW platform is used in the system, the system control, synchronous image acquisition, 3D data processing and display are realized through PC. 3D imaging experiment of underwater target is carried out in a flume with attenuation coefficient of 0.2, and the images of different depth and different material targets are obtained, the imaging frame rate is 100Hz, and the maximum detection depth is 31m. For an underwater target with a distance of 22m, the high resolution 3D image real-time acquisition is realized with range resolution of 1cm and space resolution of 0.3cm, the spatial relationship of the targets can be clearly identified by the image. The experimental results show that STIL has a good application prospect in underwater terrain detection, underwater search and rescue, and other fields.

High-resolution x-ray diffraction microscopy of specifically labeled yeast cells

PubMed Central

Nelson, Johanna; Huang, Xiaojing; Steinbrener, Jan; Shapiro, David; Kirz, Janos; Marchesini, Stefano; Neiman, Aaron M.; Turner, Joshua J.; Jacobsen, Chris

2010-01-01

X-ray diffraction microscopy complements other x-ray microscopy methods by being free of lens-imposed radiation dose and resolution limits, and it allows for high-resolution imaging of biological specimens too thick to be viewed by electron microscopy. We report here the highest resolution (11–13 nm) x-ray diffraction micrograph of biological specimens, and a demonstration of molecular-specific gold labeling at different depths within cells via through-focus propagation of the reconstructed wavefield. The lectin concanavalin A conjugated to colloidal gold particles was used to label the α-mannan sugar in the cell wall of the yeast Saccharomyces cerevisiae. Cells were plunge-frozen in liquid ethane and freeze-dried, after which they were imaged whole using x-ray diffraction microscopy at 750 eV photon energy. PMID:20368463

High-resolution x-ray diffraction microscopy of specifically labeled yeast cells

DOE PAGES

Nelson, Johanna; Huang, Xiaojing; Steinbrener, Jan; ...

2010-04-20

X-ray diffraction microscopy complements other x-ray microscopy methods by being free of lens-imposed radiation dose and resolution limits, and it allows for high-resolution imaging of biological specimens too thick to be viewed by electron microscopy. We report here the highest resolution (11-13 nm) x-ray diffraction micrograph of biological specimens, and a demonstration of molecular-specific gold labeling at different depths within cells via through-focus propagation of the reconstructed wavefield. The lectin concanavalin A conjugated to colloidal gold particles was used to label the α-mannan sugar in the cell wall of the yeast Saccharomyces cerevisiae. Cells were plunge-frozen in liquid ethane andmore » freeze-dried, after which they were imaged whole using x-ray diffraction microscopy at 750 eV photon energy.« less

Submicron-resolution photoacoustic microscopy of endogenous light-absorbing biomolecules

NASA Astrophysics Data System (ADS)

Zhang, Chi

Photoacoustic imaging in biomedicine has the unique advantage of probing endogenous light absorbers at various length scales with a 100% relative sensitivity. Among the several modalities of photoacoustic imaging, optical-resolution photoacoustic microscopy (OR-PAM) can achieve high spatial resolution, on the order of optical wavelength, at <1 mm depth in biological tissue (the optical ballistic regime). OR-PAM has been applied successfully to structural and functional imaging of blood vasculature and red blood cells in vivo. Any molecules which absorb sufficient light at certain wavelengths can potentially be imaged by PAM. Compared with pure optical imaging, which typically targets fluorescent markers, label-free PAM avoids the major concerns that the fluorescent labeling probes may disturb the function of biomolecules and may have an insufficient density. This dissertation aims to advance label-free OR-PAM to the subcellular scale. The first part of this dissertation describes the technological advancement of PAM yielding high spatial resolution in 3D. The lateral resolution was improved by using optical objectives with high numerical apertures for optical focusing. The axial resolution was improved by using broadband ultrasonic transducers for ultrasound detection. We achieved 220 nm lateral resolution in transmission mode, 0.43 microm lateral resolution in reflection mode, 7.6 microm axial resolution in normal tissue, and 5.8 microm axial resolution with silicone oil immersion/injection. The achieved lateral resolution and axial resolution were the finest reported at the time. With high-resolution in 3D, PAM was demonstrated to resolve cellular and subcellular structures in vivo, such as red blood cells and melanosomes in melanoma cells. Compared with previous PAM systems, our high-resolution PAM could resolve capillaries in mouse ears more clearly. As an example application, we demonstrated intracellular temperature imaging, assisted by fluorescence signal detection, with sub-degree temperature resolution and sub-micron lateral resolution. The second part of this dissertation describes the exploration of endogenous light-absorbing biomolecules for PAM. We demonstrated cytochromes and myoglobin as new absorption contrasts for PAM and identified the corresponding optimal wavelengths for imaging. Fixed fibroblasts on slides and mouse ear sections were imaged by PAM at 422 nm and 250 nm wavelengths to reveal cytoplasms and nuclei, respectively, as confirmed by standard hematoxylin and eosin (H&E) histology. By imaging a blood-perfused mouse heart at 532 nm down to 150 microm in depth, we derived the myocardial sheet thickness and the cleavage height from an undehydrated heart for the first time. The findings promote PAM at new wavelengths and open up new possibilities for characterizing biological tissue. Of particular interest, dual-wavelength PAM around 250 nm and 420 nm wavelengths is analogous to H&E histology. The last part of this dissertation describes the development of sectioning photoacoustic microscopy (SPAM), based on the advancement in spatial resolution and new contrasts for PAM, with applications in brain histology. Label-free SPAM, assisted by a microtome, acquires serial distortion-free images of a specimen on the surface. By exciting cell nuclei at 266 nm wavelength with high resolution, SPAM could pinpoint cell nuclei sensitively and specifically in the mouse brain section, as confirmed by H&E histology. SPAM was demonstrated to generate high-resolution 3D images, highlighting cell nuclei, of formalin-fixed paraffin-embedded mouse brains without tissue staining or clearing. SPAM can potentially serve as a high-throughput and minimal-artifact substitute for histology, probe many other biomolecules and cells, and become a universal tool for animal or human whole-organ microscopy, with diverse applications in life sciences.

Depth profile measurement with lenslet images of the plenoptic camera

NASA Astrophysics Data System (ADS)

Yang, Peng; Wang, Zhaomin; Zhang, Wei; Zhao, Hongying; Qu, Weijuan; Zhao, Haimeng; Asundi, Anand; Yan, Lei

2018-03-01

An approach for carrying out depth profile measurement of an object with the plenoptic camera is proposed. A single plenoptic image consists of multiple lenslet images. To begin with, these images are processed directly with a refocusing technique to obtain the depth map, which does not need to align and decode the plenoptic image. Then, a linear depth calibration is applied based on the optical structure of the plenoptic camera for depth profile reconstruction. One significant improvement of the proposed method concerns the resolution of the depth map. Unlike the traditional method, our resolution is not limited by the number of microlenses inside the camera, and the depth map can be globally optimized. We validated the method with experiments on depth map reconstruction, depth calibration, and depth profile measurement, with the results indicating that the proposed approach is both efficient and accurate.

A New Columnar CsI(Tl) Scintillator for iQID detectors

PubMed Central

Han, Ling; Miller, Brian W.; Barber, H. Bradford; Nagarkar, Vivek V.; Furenlid, Lars R.

2015-01-01

A 1650 μm thick columnar CsI(Tl) scintillator for upgrading iQID detectors, which is a high-resolution photon-counting gamma-ray and x-ray detector recently developed at the Center for Gamma-Ray Imaging (CGRI), has been studied in terms of sensitivity, spatial resolution and depth-of-interaction effects. To facilitate these studies, a new frame-parsing algorithm for processing raw event data is also proposed that has more degrees of freedom in data processing and can discriminate against a special kind of noise present in some low-cost intensifiers. The results show that in comparison with a 450 μm-thickness columnar CsI(Tl) scintillator, the 1650 μm thick CsI(Tl) scintillator provides more than twice the sensitivity at the expense of some spatial resolution degradation. The depth-of-interaction study also shows that event size and amplitude vary with scintillator thickness, which can assist in future detector simulations and 3D-interaction-position estimation. PMID:26146444

A New Columnar CsI(Tl) Scintillator for iQID detectors.

PubMed

Han, Ling; Miller, Brian W; Barber, H Bradford; Nagarkar, Vivek V; Furenlid, Lars R

2014-09-12

A 1650 μm thick columnar CsI(Tl) scintillator for upgrading iQID detectors, which is a high-resolution photon-counting gamma-ray and x-ray detector recently developed at the Center for Gamma-Ray Imaging (CGRI), has been studied in terms of sensitivity, spatial resolution and depth-of-interaction effects. To facilitate these studies, a new frame-parsing algorithm for processing raw event data is also proposed that has more degrees of freedom in data processing and can discriminate against a special kind of noise present in some low-cost intensifiers. The results show that in comparison with a 450 μm-thickness columnar CsI(Tl) scintillator, the 1650 μm thick CsI(Tl) scintillator provides more than twice the sensitivity at the expense of some spatial resolution degradation. The depth-of-interaction study also shows that event size and amplitude vary with scintillator thickness, which can assist in future detector simulations and 3D-interaction-position estimation.

A High-Resolution Model of the Beaufort Sea Circulation

NASA Astrophysics Data System (ADS)

Hedstrom, K.; Danielson, S. L.; Curchitser, E. N.; Lemieux, J. F.; Kasper, J.

2016-12-01

Configuration of and results from a coupled sea-ice ocean model of the Beaufort Sea shelf at 500 m resolution will be shown. Challenging features of the domain include large fresh water flux from the MacKenzie River, seasonal land-fast ice, and ice-covered open boundary conditions. A pan-Arctic domain provides boundary fields to an intermediate resolution (4 km) domain which in turn provides boundary fields to the Beaufort Shelf domain. These are all coupled ocean and sea-ice models (Regional Ocean Modeling System - myroms.org) and all are forced with river inputs from the ARDAT climatology (Whitefield et al., 2015), which includes heat content as well as flow rate. Coastal discharges are prescribed as lateral inflows distributed over the depth of the ocean-land interface. New in the Beaufort domain is the use of a landfast ice parameterization (Lemieux, 2015), which adds a large bottom stress to the ice when the estimated keel depth approaches that of the ocean.

In vivo correlation mapping microscopy

NASA Astrophysics Data System (ADS)

McGrath, James; Alexandrov, Sergey; Owens, Peter; Subhash, Hrebesh; Leahy, Martin

2016-04-01

To facilitate regular assessment of the microcirculation in vivo, noninvasive imaging techniques such as nailfold capillaroscopy are required in clinics. Recently, a correlation mapping technique has been applied to optical coherence tomography (OCT), which extends the capabilities of OCT to microcirculation morphology imaging. This technique, known as correlation mapping optical coherence tomography, has been shown to extract parameters, such as capillary density and vessel diameter, and key clinical markers associated with early changes in microvascular diseases. However, OCT has limited spatial resolution in both the transverse and depth directions. Here, we extend this correlation mapping technique to other microscopy modalities, including confocal microscopy, and take advantage of the higher spatial resolution offered by these modalities. The technique is achieved as a processing step on microscopy images and does not require any modification to the microscope hardware. Results are presented which show that this correlation mapping microscopy technique can extend the capabilities of conventional microscopy to enable mapping of vascular networks in vivo with high spatial resolution in both the transverse and depth directions.

Shack-Hartmann wavefront-sensor-based adaptive optics system for multiphoton microscopy

PubMed Central

Cha, Jae Won; Ballesta, Jerome; So, Peter T.C.

2010-01-01

The imaging depth of two-photon excitation fluorescence microscopy is partly limited by the inhomogeneity of the refractive index in biological specimens. This inhomogeneity results in a distortion of the wavefront of the excitation light. This wavefront distortion results in image resolution degradation and lower signal level. Using an adaptive optics system consisting of a Shack-Hartmann wavefront sensor and a deformable mirror, wavefront distortion can be measured and corrected. With adaptive optics compensation, we demonstrate that the resolution and signal level can be better preserved at greater imaging depth in a variety of ex-vivo tissue specimens including mouse tongue muscle, heart muscle, and brain. However, for these highly scattering tissues, we find signal degradation due to scattering to be a more dominant factor than aberration. PMID:20799824

Shack-Hartmann wavefront-sensor-based adaptive optics system for multiphoton microscopy.

PubMed

Cha, Jae Won; Ballesta, Jerome; So, Peter T C

2010-01-01

The imaging depth of two-photon excitation fluorescence microscopy is partly limited by the inhomogeneity of the refractive index in biological specimens. This inhomogeneity results in a distortion of the wavefront of the excitation light. This wavefront distortion results in image resolution degradation and lower signal level. Using an adaptive optics system consisting of a Shack-Hartmann wavefront sensor and a deformable mirror, wavefront distortion can be measured and corrected. With adaptive optics compensation, we demonstrate that the resolution and signal level can be better preserved at greater imaging depth in a variety of ex-vivo tissue specimens including mouse tongue muscle, heart muscle, and brain. However, for these highly scattering tissues, we find signal degradation due to scattering to be a more dominant factor than aberration.

Research of an optimization design method of integral imaging three-dimensional display system

NASA Astrophysics Data System (ADS)

Gao, Hui; Yan, Zhiqiang; Wen, Jun; Jiang, Guanwu

2016-03-01

The information warfare needs a highly transparent environment of battlefield, it follows that true three-dimensional display technology has obvious advantages than traditional display technology in the current field of military science and technology. It also focuses on the research progress of lens array imaging technology and aims at what restrict the development of integral imaging, main including low spatial resolution, narrow depth range and small viewing angle. This paper summarizes the principle, characteristics and development history of the integral imaging. A variety of methods are compared and analyzed that how to improve the resolution, extend depth of field, increase scope and eliminate the artifact aiming at problems currently. And makes a discussion about the experimental results of the research, comparing the display performance of different methods.

High resolution multiple excitation spot optical microscopy

NASA Astrophysics Data System (ADS)

Dilipkumar, Shilpa; Mondal, Partha Pratim

2011-06-01

We propose fundamental improvements in three-dimensional (3D) resolution of multiple excitation spot optical microscopy. The excitation point spread function (PSF) is generated by two interfering counter-propagating depth-of-focus beams along the optical axis. Detection PSF is obtained by coherently interfering the emitted fluorescent light (collected by both the objectives) at the detector. System PSF shows upto 14-fold reduction in focal volume as compared to confocal, and almost 2-fold improvement in lateral resolution. Proposed PSF has the ability to simultaneously excite multiple 3D-spots of sub-femtoliter volume. Potential applications are in fluorescence microscopy and nanobioimaging.

Comparisons of the diagnostic accuracies of optical coherence tomography, micro-computed tomography, and histology in periodontal disease: an ex vivo study

PubMed Central

2017-01-01

Purpose Optical coherence tomography (OCT) is a noninvasive diagnostic technique that may be useful for both qualitative and quantitative analyses of the periodontium. Micro-computed tomography (micro-CT) is another noninvasive imaging technique capable of providing submicron spatial resolution. The purpose of this study was to present periodontal images obtained using ex vivo dental OCT and to compare OCT images with micro-CT images and histologic sections. Methods Images of ex vivo canine periodontal structures were obtained using OCT. Biologic depth measurements made using OCT were compared to measurements made on histologic sections prepared from the same sites. Visual comparisons were made among OCT, micro-CT, and histologic sections to evaluate whether anatomical details were accurately revealed by OCT. Results The periodontal tissue contour, gingival sulcus, and the presence of supragingival and subgingival calculus could be visualized using OCT. OCT was able to depict the surface topography of the dentogingival complex with higher resolution than micro-CT, but the imaging depth was typically limited to 1.2–1.5 mm. Biologic depth measurements made using OCT were a mean of 0.51 mm shallower than the histologic measurements. Conclusions Dental OCT as used in this study was able to generate high-resolution, cross-sectional images of the superficial portions of periodontal structures. Improvements in imaging depth and the development of an intraoral sensor are likely to make OCT a useful technique for periodontal applications. PMID:28261522

Deep Roots of Cratons From Surface-wave Tomography

NASA Astrophysics Data System (ADS)

Cara, M.; Debayle, E.; Lévêque, J. J.

Thanks to the application of multimode waveform inversion techniques to various sets of surface wave seismograms recorded on global networks of broad-band seismome- ters, either permanent (IRIS, Geoscope) or temporary (PASSCAL, INSU), unprece- dented lateral- and depth-resolution can be achieved in upper-mantle surface-wave tomography. With a depth-resolution around 50 km and a lateral resolution around 250 km in the upper mantle, Sv velocity models beneath Australia, South-America, Eurasia and East-Africa show fast velocity anomalies associated with shield generally confined to the uppermost 200 km of the mantle. We show on cross-sections taken across different continents that there is no evidence so far for "thermal and/or com- positional" lithospheric roots extending deeper than 300 km in the continental regions we have investigated. In addition, surface wave azimuthal anisotropy can be used as an indicator of the me- chanical thickness of the lithosphere when a clear change in the pattern of anisotropic directions is observed with depth. The fast moving Australian plate shows the clear- est example of such a change occuring at relatively shallow depths (150 km) within the high seismic velocity lid. This suggests that seismic anisotropy defines a "me- chanical" lithosphere that does not coincide with the "thermal and/or compositional" lithosphere probably imaged by velocity anomalies. However, beneath other slowly moving plates, such a change in pattern is less clear and there is a tendency of seismic anisotropy to disappear at the bottom of the lid.

Toward improved prediction of the bedrock depth underneath hillslopes: Bayesian inference of the bottom-up control hypothesis using high-resolution topographic data

NASA Astrophysics Data System (ADS)

Gomes, Guilherme J. C.; Vrugt, Jasper A.; Vargas, Eurípedes A.

2016-04-01

The depth to bedrock controls a myriad of processes by influencing subsurface flow paths, erosion rates, soil moisture, and water uptake by plant roots. As hillslope interiors are very difficult and costly to illuminate and access, the topography of the bedrock surface is largely unknown. This essay is concerned with the prediction of spatial patterns in the depth to bedrock (DTB) using high-resolution topographic data, numerical modeling, and Bayesian analysis. Our DTB model builds on the bottom-up control on fresh-bedrock topography hypothesis of Rempe and Dietrich (2014) and includes a mass movement and bedrock-valley morphology term to extent the usefulness and general applicability of the model. We reconcile the DTB model with field observations using Bayesian analysis with the DREAM algorithm. We investigate explicitly the benefits of using spatially distributed parameter values to account implicitly, and in a relatively simple way, for rock mass heterogeneities that are very difficult, if not impossible, to characterize adequately in the field. We illustrate our method using an artificial data set of bedrock depth observations and then evaluate our DTB model with real-world data collected at the Papagaio river basin in Rio de Janeiro, Brazil. Our results demonstrate that the DTB model predicts accurately the observed bedrock depth data. The posterior mean DTB simulation is shown to be in good agreement with the measured data. The posterior prediction uncertainty of the DTB model can be propagated forward through hydromechanical models to derive probabilistic estimates of factors of safety.

Optical changes in cortical tissue during seizure activity using optical coherence tomography (Conference Presentation)

NASA Astrophysics Data System (ADS)

Ornelas, Danielle; Hasan, Md.; Gonzalez, Oscar; Krishnan, Giri; Szu, Jenny I.; Myers, Timothy; Hirota, Koji; Bazhenov, Maxim; Binder, Devin K.; Park, Boris H.

2017-02-01

Epilepsy is a chronic neurological disorder characterized by recurrent and unpredictable seizures. Electrophysiology has remained the gold standard of neural activity detection but its resolution and high susceptibility to noise and motion artifact limit its efficiency. Optical imaging techniques, including fMRI, intrinsic optical imaging, and diffuse optical imaging, have also been used to detect neural activity yet these techniques rely on the indirect measurement of changes in blood flow. A more direct optical imaging technique is optical coherence tomography (OCT), a label-free, high resolution, and minimally invasive imaging technique that can produce depth-resolved cross-sectional and 3D images. In this study, OCT was used to detect non-vascular depth-dependent optical changes in cortical tissue during 4-aminopyridine (4-AP) induced seizure onset. Calculations of localized optical attenuation coefficient (µ) allow for the assessment of depth-resolved volumetric optical changes in seizure induced cortical tissue. By utilizing the depth-dependency of the attenuation coefficient, we demonstrate the ability to locate and remove the optical effects of vasculature within the upper regions of the cortex on the attenuation calculations of cortical tissue in vivo. The results of this study reveal a significant depth-dependent decrease in attenuation coefficient of nonvascular cortical tissue both ex vivo and in vivo. Regions exhibiting decreased attenuation coefficient show significant temporal correlation to regions of increased electrical activity during seizure onset and progression. This study allows for a more thorough and biologically relevant analysis of the optical signature of seizure activity in vivo using OCT.

Conflicts and communication between high-achieving Chinese American adolescents and their parents.

PubMed

Qin, Desiree Baolian; Chang, Tzu-Fen; Han, Eun-Jin; Chee, Grace

2012-01-01

Drawing on in-depth interview data collected on 18 high-achieving Chinese American students, the authors examine domains of acculturation-based conflicts, parent and child internal conflicts, and conflict resolution in their families. Their analyses show that well-established negative communication patterns in educational expectations, divergent attitudes toward other races and country of origin, and cultural and language barriers contributed to parent-child conflicts. Their findings also illustrate important internal conflicts both adolescents and parents had along the cultural tightrope of autonomy and relatedness. Finally, the vertical in-group conflict resolution style that was evidenced in youths' accounts raises questions about cultural differences in constructive versus destructive conflict resolution styles. © 2012 Wiley Periodicals, Inc., A Wiley Company.

Development of Vertical Cable Seismic System

NASA Astrophysics Data System (ADS)

Asakawa, E.; Murakami, F.; Sekino, Y.; Okamoto, T.; Ishikawa, K.; Tsukahara, H.; Shimura, T.

2011-12-01

In 2009, Ministry of Education, Culture, Sports, Science and Technology(MEXT) started the survey system development for Hydrothermal deposit. We proposed the Vertical Cable Seismic (VCS), the reflection seismic survey with vertical cable above seabottom. VCS has the following advantages for hydrothermal deposit survey. (1) VCS is an efficient high-resolution 3D seismic survey in limited area. (2) It achieves high-resolution image because the sensors are closely located to the target. (3) It avoids the coupling problems between sensor and seabottom that cause serious damage of seismic data quality. (4) Because of autonomous recording system on sea floor, various types of marine source are applicable with VCS such as sea-surface source (GI gun etc.) , deep-towed or ocean bottom source. Our first experiment of 2D/3D VCS surveys has been carried out in Lake Biwa, JAPAN, in November 2009. The 2D VCS data processing follows the walk-away VSP, including wave field separation and depth migration. Seismic Interferometry technique is also applied. The results give much clearer image than the conventional surface seismic. Prestack depth migration is applied to 3D data to obtain good quality 3D depth volume. Seismic Interferometry technique is applied to obtain the high resolution image in the very shallow zone. Based on the feasibility study, we have developed the autonomous recording VCS system and carried out the trial experiment in actual ocean at the water depth of about 400m to establish the procedures of deployment/recovery and to examine the VC position or fluctuation at seabottom. The result shows that the VC position is estimated with sufficient accuracy and very little fluctuation is observed. Institute of Industrial Science, the University of Tokyo took the research cruise NT11-02 on JAMSTEC R/V Natsushima in February, 2011. In the cruise NT11-02, JGI carried out the second VCS survey using the autonomous VCS recording system with the deep towed source provided by Institute of Industrial Science, the University of Tokyo. It generates high frequency acoustic waves around 1kHz. The acquired VCS data clearly shows the reflections and currently being processed for imaging the subsurface structure.

Investigation of Damage with Cluster Ion Beam Irradiation Using HR-RBS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seki, Toshio; Aoki, Takaaki; Matsuo, Jiro

2008-11-03

Cluster ion beam can process targets with shallow damage because of the very low irradiation energy per atom. However, it is needed to investigate the damage with cluster ion beam irradiation, because recent applications demand process targets with ultra low damage. The shallow damage can be investigated from depth profiles of specific species before and after ion irradiation. They can be measured with secondary ion mass spectrometry (SIMS) and Rutherford backscattering spectroscopy (RBS). High resolution Rutherford backscattering spectroscopy (HR-RBS) is a non destructive measurement method and depth profiles can be measured with nano-resolution. The cluster ion beam mixing of thinmore » Ni layer in carbon targets can be investigated with HR-RBS. The mixing depth with cluster ion irradiation at 10 keV was about 10 nm. The mixing depth with cluster ion irradiation at 1 keV and 5 keV were less than 1 nm and 5 nm, respectively. The number of displaced Ni atoms with cluster ion irradiation was very larger than that with monomer ion irradiation of same energy. This result shows that violent mixing occurs with single cluster impact.« less

Preliminary results of the aerosol optical depth retrieval in Johor, Malaysia

NASA Astrophysics Data System (ADS)

Lim, H. Q.; Kanniah, K. D.; Lau, A. M. S.

2014-02-01

Monitoring of atmospheric aerosols over the urban area is important as tremendous amounts of pollutants are released by industrial activities and heavy traffic flow. Air quality monitoring by satellite observation provides better spatial coverage, however, detailed aerosol properties retrieval remains a challenge. This is due to the limitation of aerosol retrieval algorithm on high reflectance (bright surface) areas. The aim of this study is to retrieve aerosol optical depth over urban areas of Iskandar Malaysia; the main southern development zone in Johor state, using Moderate Resolution Imaging Spectroradiometer (MODIS) 500 m resolution data. One of the important steps is the aerosol optical depth retrieval is to characterise different types of aerosols in the study area. This information will be used to construct a Look Up Table containing the simulated aerosol reflectance and corresponding aerosol optical depth. Thus, in this study we have characterised different aerosol types in the study area using Aerosol Robotic Network (AERONET) data. These data were processed using cluster analysis and the preliminary results show that the area is consisting of coastal urban (65%), polluted urban (27.5%), dust particles (6%) and heavy pollution (1.5%) aerosols.

Compressive sensing of frequency-dependent seismic radiation from subduction zone megathrust ruptures

PubMed Central

Yao, Huajian; Shearer, Peter M.; Gerstoft, Peter

2013-01-01

Megathrust earthquakes rupture a broad zone of the subducting plate interface in both along-strike and along-dip directions. The along-dip rupture characteristics of megathrust events, e.g., their slip and energy radiation distribution, reflect depth-varying frictional properties of the slab interface. Here, we report high-resolution frequency-dependent seismic radiation of the four largest megathrust earthquakes in the past 10 y using a compressive-sensing (sparse source recovery) technique, resolving generally low-frequency radiation closer to the trench at shallower depths and high-frequency radiation farther from the trench at greater depths. Together with coseismic slip models and early aftershock locations, our results suggest depth-varying frictional properties at the subducting plate interfaces. The shallower portion of the slab interface (above ∼15 km) is frictionally stable or conditionally stable and is the source region for tsunami earthquakes with large coseismic slip, deficient high-frequency radiation, and few early aftershocks. The slab interface at intermediate depths (∼15–35 km) is the main unstable seismogenic zone for the nucleation of megathrust quakes, typically with large coseismic slip, abundant early aftershocks, and intermediate- to high-frequency radiation. The deeper portion of the slab interface (∼35–45 km) is seismically unstable, however with small coseismic slip, dominant high-frequency radiation, and relatively fewer aftershocks.

Optical instruments synergy in determination of optical depth of thin clouds

NASA Astrophysics Data System (ADS)

Viviana Vlăduţescu, Daniela; Schwartz, Stephen E.; Huang, Dong

2018-04-01

Optically thin clouds have a strong radiative effect and need to be represented accurately in climate models. Cloud optical depth of thin clouds was retrieved using high resolution digital photography, lidar, and a radiative transfer model. The Doppler Lidar was operated at 1.5 μm, minimizing return from Rayleigh scattering, emphasizing return from aerosols and clouds. This approach examined cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opening new avenues for examination of cloud structure and evolution.

Optical Instruments Synergy in Determination of Optical Depth of Thin Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vladutescu, Daniela V.; Schwartz, Stephen E.

Optically thin clouds have a strong radiative effect and need to be represented accurately in climate models. Cloud optical depth of thin clouds was retrieved using high resolution digital photography, lidar, and a radiative transfer model. The Doppler Lidar was operated at 1.5 μm, minimizing return from Rayleigh scattering, emphasizing return from aerosols and clouds. This approach examined cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opening new avenues for examination of cloud structure and evolution.

CscoreTool: fast Hi-C compartment analysis at high resolution.

PubMed

Zheng, Xiaobin; Zheng, Yixian

2018-05-01

The genome-wide chromosome conformation capture (Hi-C) has revealed that the eukaryotic genome can be partitioned into A and B compartments that have distinctive chromatin and transcription features. Current Principle Component Analyses (PCA)-based method for the A/B compartment prediction based on Hi-C data requires substantial CPU time and memory. We report the development of a method, CscoreTool, which enables fast and memory-efficient determination of A/B compartments at high resolution even in datasets with low sequencing depth. https://github.com/scoutzxb/CscoreTool. xzheng@carnegiescience.edu. Supplementary data are available at Bioinformatics online.

High resolution imaging and lithography with hard x rays using parabolic compound refractive lenses

NASA Astrophysics Data System (ADS)

Schroer, C. G.; Benner, B.; Günzler, T. F.; Kuhlmann, M.; Zimprich, C.; Lengeler, B.; Rau, C.; Weitkamp, T.; Snigirev, A.; Snigireva, I.; Appenzeller, J.

2002-03-01

Parabolic compound refractive lenses are high quality optical components for hard x rays. They are particularly suited for full field imaging, with applications in microscopy and x-ray lithography. Taking advantage of the large penetration depth of hard x rays, the interior of opaque samples can be imaged with submicrometer resolution. To obtain the three-dimensional structure of a sample, microscopy is combined with tomographic techniques. In a first hard x-ray lithography experiment, parabolic compound refractive lenses have been used to project the reduced image of a lithography mask onto a resist. Future developments are discussed.

Japan unified hIgh-resolution relocated catalog for earthquakes (JUICE): Crustal seismicity beneath the Japanese Islands

NASA Astrophysics Data System (ADS)

Yano, Tomoko E.; Takeda, Tetsuya; Matsubara, Makoto; Shiomi, Katsuhiko

2017-04-01

We have generated a high-resolution catalog called the ;Japan Unified hIgh-resolution relocated Catalog for Earthquakes; (JUICE), which can be used to evaluate the geometry and seismogenic depth of active faults in Japan. We relocated > 1.1 million hypocenters from the NIED Hi-net catalog for events which occurred between January 2001 and December 2012, to a depth of 40 km. We apply a relative hypocenter determination method to the data in each grid square, in which entire Japan is divided into 1257 grid squares to parallelize the relocation procedure. We used a double-difference method, incorporating cross-correlating differential times as well as catalog differential times. This allows us to resolve, in detail, a seismicity distribution for the entire Japanese Islands. We estimated location uncertainty by a statistical resampling method, using Jackknife samples, and show that the uncertainty can be within 0.37 km in the horizontal and 0.85 km in the vertical direction with a 90% confidence interval for areas with good station coverage. Our seismogenic depth estimate agrees with the lower limit of the hypocenter distribution for a recent earthquake on the Kamishiro fault (2014, Mj 6.7), which suggests that the new catalog should be useful for estimating the size of future earthquakes for inland active faults.

Retinal Structure of Birds of Prey Revealed by Ultra-High Resolution Spectral-Domain Optical Coherence Tomography

PubMed Central

Ruggeri, Marco; Major, James C.; McKeown, Craig; Knighton, Robert W.; Puliafito, Carmen A.

2010-01-01

Purpose. To reveal three-dimensional (3-D) information about the retinal structures of birds of prey in vivo. Methods. An ultra-high resolution spectral-domain optical coherence tomography (SD-OCT) system was built for in vivo imaging of retinas of birds of prey. The calibrated imaging depth and axial resolution of the system were 3.1 mm and 2.8 μm (in tissue), respectively. 3-D segmentation was performed for calculation of the retinal nerve fiber layer (RNFL) map. Results. High-resolution OCT images were obtained of the retinas of four species of birds of prey: two diurnal hawks (Buteo platypterus and Buteo brachyurus) and two nocturnal owls (Bubo virginianus and Strix varia). These images showed the detailed retinal anatomy, including the retinal layers and the structure of the deep and shallow foveae. The calculated thickness map showed the RNFL distribution. Traumatic injury to one bird's retina was also successfully imaged. Conclusions. Ultra-high resolution SD-OCT provides unprecedented high-quality 2-D and 3-D in vivo visualization of the retinal structures of birds of prey. SD-OCT is a powerful imaging tool for vision research in birds of prey. PMID:20554605

UAS applications in high alpine, snow-covered terrain

NASA Astrophysics Data System (ADS)

Bühler, Y.; Stoffel, A.; Ginzler, C.

2017-12-01

Access to snow-covered, alpine terrain is often difficult and dangerous. Hence parameters such as snow depth or snow avalanche release and deposition zones are hard to map in situ with adequate spatial and temporal resolution and with spatial continuous coverage. These parameters are currently operationally measured at automated weather stations and by observer networks. However such isolated point measurements are not able to capture the information spatial continuous and to describe the high spatial variability present in complex mountain topography. Unmanned Aerial Systems (UAS) have the potential to fill this gap by frequently covering selected high alpine areas with high spatial resolution down to ground resolutions of even few millimeters. At the WSL Institute for Snow and Avalanche Research SLF we test different photogrammetric UAS with visual and near infrared bands. During the last three years we were able to gather experience in more than 100 flight missions in extreme terrain. By processing the imagery applying state-of-the-art structure from motion (SfM) software, we were able to accurately document several avalanche events and to photogrammetrically map snow depth with accuracies from 1 to 20 cm (dependent on the flight height above ground) compare to manual snow probe measurements. This was even possible on homogenous snow surfaces with very little texture. A key issue in alpine terrain is flight planning. We need to cover regions at high elevations with large altitude differences (up to 1 km) with high wind speeds (up to 20 m/s) and cold temperatures (down to - 25°C). Only a few UAS are able to cope with these environmental conditions. We will give an overview on our applications of UAS in high alpine terrain that demonstrate the big potential of such systems to acquire frequent, accurate and high spatial resolution geodata in high alpine, snow covered terrain that could be essential to answer longstanding questions in avalanche and snow hydrology research.

In-depth evolution of chemical states and sub-10-nm-resolution crystal orientation mapping of nanograins in Ti(5 nm)/Au(20 nm)/Cr(3 nm) tri-layer thin films

NASA Astrophysics Data System (ADS)

Zhu, Xiaoli; Todeschini, Matteo; Bastos da Silva Fanta, Alice; Liu, Lintao; Jensen, Flemming; Hübner, Jörg; Jansen, Henri; Han, Anpan; Shi, Peixiong; Ming, Anjie; Xie, Changqing

2018-09-01

The applications of Au thin films and their adhesion layers often suffer from a lack of sufficient information about the chemical states of adhesion layers and about the high-lateral-resolution crystallographic morphology of Au nanograins. Here, we demonstrate the in-depth evolution of the chemical states of adhesive layers at the interfaces and the crystal orientation mapping of gold nanograins with a lateral resolution of less than 10 nm in a Ti/Au/Cr tri-layer thin film system. Using transmission electron microscopy, the variation in the interdiffusion at Cr/Au and Ti/Au interfaces was confirmed. From X-ray photoelectron spectroscopy (XPS) depth profiling, the chemical states of Cr, Au and Ti were characterized layer by layer, suggesting the insufficient oxidation of the adhesive layers. At the interfaces the Au 4f peaks shift to higher binding energies and this behavior can be described by a proposed model based on electron reorganization and substrate-induced final-state neutralization in small Au clusters supported by the partially oxidized Ti layer. Utilizing transmission Kikuchi diffraction (TKD) in a scanning electron microscope, the crystal orientation of Au nanograins between two adhesion layers was non-destructively characterized with sub-10 nm spatial resolution. The results provide nanoscale insights into the Ti/Au/Cr thin film system and contribute to our understanding of its behavior in nano-optic and nano-electronic devices.

Rapid kinematic finite source inversion for Tsunamic Early Warning using high rate GNSS data

NASA Astrophysics Data System (ADS)

Chen, K.; Liu, Z.; Song, Y. T.

2017-12-01

Recently, Global Navigation Satellite System (GNSS) has been used for rapid earthquake source inversion towards tsunami early warning. In practice, two approaches, i.e., static finite source inversion based on permanent co-seismic offsets and kinematic finite source inversion using high-rate (>= 1 Hz) co-seismic displacement waveforms, are often employed to fulfill the task. The static inversion is relatively easy to be implemented and does not require additional constraints on rupture velocity, duration, and temporal variation. However, since most GNSS receivers are deployed onshore locating on one side of the subduction fault, there is very limited resolution on near-trench fault slip using GNSS in static finite source inversion. On the other hand, the high-rate GNSS displacement waveforms, which contain the timing information of earthquake rupture explicitly and static offsets implicitly, have the potential to improve near-trench resolution by reconciling with the depth-dependent megathrust rupture behaviors. In this contribution, we assess the performance of rapid kinematic finite source inversion using high-rate GNSS by three selected historical tsunamigenic cases: the 2010 Mentawai, 2011 Tohoku and 2015 Illapel events. With respect to the 2010 Mentawai case, it is a typical tsunami earthquake with most slip concentrating near the trench. The static inversion has little resolution there and incorrectly puts slip at greater depth (>10km). In contrast, the recorded GNSS displacement waveforms are deficit in high-frequency energy, the kinematic source inversion recovers a shallow slip patch (depth less than 6 km) and tsunami runups are predicted quite reasonably. For the other two events, slip from kinematic and static inversion show similar characteristics and comparable tsunami scenarios, which may be related to dense GNSS network and behavior of the rupture. Acknowledging the complexity of kinematic source inversion in real-time, we adopt the back-projection approach to provide constraint on rupture velocity.

Improving resistivity survey resolution at sites with limited spatial extent using buried electrode arrays

NASA Astrophysics Data System (ADS)

Kiflu, H.; Kruse, S.; Loke, M. H.; Wilkinson, P. B.; Harro, D.

2016-12-01

Electrical resistivity tomography (ERT) surveys are widely used in geological, environmental and engineering studies. However, the effectiveness of surface ERT surveys is limited by decreasing resolution with depth and near the ends of the survey line. Increasing the array length will increase depth of investigation, but may not be possible at urban sites where access is limited. One novel method of addressing these limitations while maintaining lateral coverage is to install an array of deep electrodes. Referred to here as the Multi-Electrode Resistivity Implant Technique (MERIT), self-driving pointed electrodes are implanted at depth below each surface electrode in an array, using direct-push technology. Optimal sequences of readings have been identified with the "Compare R" method of Wilkinson. Numerical, laboratory, and field case studies are applied to examine the effectiveness of the MERIT method, particularly for use in covered karst terrain. In the field case studies, resistivity images are compared against subsurface structure defined from borings, GPR surveys, and knowledge of prior land use. In karst terrain where limestone has a clay overburden, traditional surface resistivity methods suffer from lack of current penetration through the shallow clay layer. In these settings, the MERIT method is found to improve resolution of features between the surface and buried array, as well as increasing depth of penetration and enhancing imaging capabilities at the array ends. The method functions similar to a cross-borehole array between horizontal boreholes, and suffers from limitations common to borehole arrays. Inversion artifacts are common at depths close to the buried array, and because some readings involve high geometric factors, inversions are more susceptible to noise than traditional surface arrays. Results are improved by using errors from reciprocal measurements to weight the data during the inversion.

A multi-resolution approach to electromagnetic modelling

NASA Astrophysics Data System (ADS)

Cherevatova, M.; Egbert, G. D.; Smirnov, M. Yu

2018-07-01

We present a multi-resolution approach for 3-D magnetotelluric forward modelling. Our approach is motivated by the fact that fine-grid resolution is typically required at shallow levels to adequately represent near surface inhomogeneities, topography and bathymetry, while a much coarser grid may be adequate at depth where the diffusively propagating electromagnetic fields are much smoother. With a conventional structured finite difference grid, the fine discretization required to adequately represent rapid variations near the surface is continued to all depths, resulting in higher computational costs. Increasing the computational efficiency of the forward modelling is especially important for solving regularized inversion problems. We implement a multi-resolution finite difference scheme that allows us to decrease the horizontal grid resolution with depth, as is done with vertical discretization. In our implementation, the multi-resolution grid is represented as a vertical stack of subgrids, with each subgrid being a standard Cartesian tensor product staggered grid. Thus, our approach is similar to the octree discretization previously used for electromagnetic modelling, but simpler in that we allow refinement only with depth. The major difficulty arose in deriving the forward modelling operators on interfaces between adjacent subgrids. We considered three ways of handling the interface layers and suggest a preferable one, which results in similar accuracy as the staggered grid solution, while retaining the symmetry of coefficient matrix. A comparison between multi-resolution and staggered solvers for various models shows that multi-resolution approach improves on computational efficiency without compromising the accuracy of the solution.

3D wide field-of-view Gabor-domain optical coherence microscopy advancing real-time in-vivo imaging and metrology

NASA Astrophysics Data System (ADS)

Canavesi, Cristina; Cogliati, Andrea; Hayes, Adam; Tankam, Patrice; Santhanam, Anand; Rolland, Jannick P.

2017-02-01

Real-time volumetric high-definition wide-field-of-view in-vivo cellular imaging requires micron-scale resolution in 3D. Compactness of the handheld device and distortion-free images with cellular resolution are also critically required for onsite use in clinical applications. By integrating a custom liquid lens-based microscope and a dual-axis MEMS scanner in a compact handheld probe, Gabor-domain optical coherence microscopy (GD-OCM) breaks the lateral resolution limit of optical coherence tomography through depth, overcoming the tradeoff between numerical aperture and depth of focus, enabling advances in biotechnology. Furthermore, distortion-free imaging with no post-processing is achieved with a compact, lightweight handheld MEMS scanner that obtained a 12-fold reduction in volume and 17-fold reduction in weight over a previous dual-mirror galvanometer-based scanner. Approaching the holy grail of medical imaging - noninvasive real-time imaging with histologic resolution - GD-OCM demonstrates invariant resolution of 2 μm throughout a volume of 1 x 1 x 0.6 mm3, acquired and visualized in less than 2 minutes with parallel processing on graphics processing units. Results on the metrology of manufactured materials and imaging of human tissue with GD-OCM are presented.

In-Situ Wave Observations in the High Resolution Air-Sea Interaction DRI

DTIC Science & Technology

2008-09-30

Program ( CDIP ) Harvest buoy located in 204 m depth off Point Conception. The initial sea surface is assumed Gaussian and homogeneous, with spectral...of simulated sea surface elevation. Right panels: corresponding observed frequency-directional wave spectra (source: CDIP ). Upper panels: Typical

Adaptive optics optical coherence tomography at 120,000 depth scans/s for non-invasive cellular phenotyping of the living human retina

PubMed Central

Torti, Cristiano; Považay, Boris; Hofer, Bernd; Unterhuber, Angelika; Carroll, Joseph; Ahnelt, Peter Kurt; Drexler, Wolfgang

2012-01-01

This paper presents a successful combination of ultra-high speed (120,000 depth scans/s), ultra-high resolution optical coherence tomography with adaptive optics and an achromatizing lens for compensation of monochromatic and longitudinal chromatic ocular aberrations, respectively, allowing for non-invasive volumetric imaging in normal and pathologic human retinas at cellular resolution. The capability of this imaging system is demonstrated here through preliminary studies by probing cellular intraretinal structures that have not been accessible so far with in vivo, non-invasive, label-free imaging techniques, including pigment epithelial cells, micro-vasculature of the choriocapillaris, single nerve fibre bundles and collagenous plates of the lamina cribrosa in the optic nerve head. In addition, the volumetric extent of cone loss in two colour-blinds could be quantified for the first time. This novel technique provides opportunities to enhance the understanding of retinal pathogenesis and early diagnosis of retinal diseases. PMID:19997159

Design of a handheld optical coherence microscopy endoscope

NASA Astrophysics Data System (ADS)

Korde, Vrushali R.; Liebmann, Erica; Barton, Jennifer K.

2011-06-01

Optical coherence microscopy (OCM) combines coherence gating, high numerical aperture optics, and a fiber-core pinhole to provide high axial and lateral resolution with relatively large depth of imaging. We present a handheld rigid OCM endoscope designed for small animal surgical imaging, with a 6-mm diam tip, 1-mm scan width, and 1-mm imaging depth. X-Y scanning is performed distally with mirrors mounted to micro galvonometer scanners incorporated into the endoscope handle. The endoscope optical design consists of scanning doublets, an afocal Hopkins relay lens system, a 0.4 numerical aperture water immersion objective, and a cover glass. This endoscope can resolve laterally a 1.4-μm line pair feature and has an axial resolution (full width half maximum) of 5.4 μm. Images taken with this endoscope of fresh ex-vivo mouse ovaries show structural features, such as corpus luteum, primary follicles, growing follicles, and fallopian tubes. This rigid handheld OCM endoscope can be useful for a variety of minimally invasive and surgical imaging applications.

Domain-averaged snow depth over complex terrain from flat field measurements

NASA Astrophysics Data System (ADS)

Helbig, Nora; van Herwijnen, Alec

2017-04-01

Snow depth is an important parameter for a variety of coarse-scale models and applications, such as hydrological forecasting. Since high-resolution snow cover models are computational expensive, simplified snow models are often used. Ground measured snow depth at single stations provide a chance for snow depth data assimilation to improve coarse-scale model forecasts. Snow depth is however commonly recorded at so-called flat fields, often in large measurement networks. While these ground measurement networks provide a wealth of information, various studies questioned the representativity of such flat field snow depth measurements for the surrounding topography. We developed two parameterizations to compute domain-averaged snow depth for coarse model grid cells over complex topography using easy to derive topographic parameters. To derive the two parameterizations we performed a scale dependent analysis for domain sizes ranging from 50m to 3km using highly-resolved snow depth maps at the peak of winter from two distinct climatic regions in Switzerland and in the Spanish Pyrenees. The first, simpler parameterization uses a commonly applied linear lapse rate. For the second parameterization, we first removed the obvious elevation gradient in mean snow depth, which revealed an additional correlation with the subgrid sky view factor. We evaluated domain-averaged snow depth derived with both parameterizations using flat field measurements nearby with the domain-averaged highly-resolved snow depth. This revealed an overall improved performance for the parameterization combining a power law elevation trend scaled with the subgrid parameterized sky view factor. We therefore suggest the parameterization could be used to assimilate flat field snow depth into coarse-scale snow model frameworks in order to improve coarse-scale snow depth estimates over complex topography.

Plate tectonics and hotspots: the third dimension.

PubMed

Anderson, D L; Tanimoto, T; Zhang, Y S

1992-06-19

High-resolution seismic tomographic models of the upper mantle provide powerful new constraints on theories of plate tectonics and hotspots. Midocean ridges have extremely low seismic velocities to a depth of 100 kilometers. These low velocities imply partial melting. At greater depths, low-velocity and high-velocity anomalies record, respectively, previous positions of migrating ridges and trenches. Extensional, rifting, and hotspot regions have deep (> 200 kilometers) low-velocity anomalies. The upper mantle is characterized by vast domains of high temperature rather than small regions surrounding hotspots; the asthenosphere is not homogeneous or isothermal. Extensive magmatism requires a combination of hot upper mantle and suitable lithospheric conditions. High-velocity regions of the upper 200 kilometers of the mantle correlate with Archean cratons.

Design and simulation of a novel method for determining depth-of-interaction in a PET scintillation crystal array using a single-ended readout by a multi-anode PMT

NASA Astrophysics Data System (ADS)

Ito, Mikiko; Lee, Jae Sung; Park, Min-Jae; Sim, Kwang-Souk; Jong Hong, Seong

2010-07-01

PET detectors with depth-of-interaction (DOI) encoding capability allow high spatial resolution and high sensitivity to be achieved simultaneously. To obtain DOI information from a mono-layer array of scintillation crystals using a single-ended readout, the authors devised a method based on light spreading within a crystal array and performed Monte Carlo simulations with individual scintillation photon tracking to prove the concept. A scintillation crystal array model was constructed using a grid method. Conventional grids are constructed using comb-shaped reflector strips with rectangular teeth to isolate scintillation crystals optically. However, the authors propose the use of triangularly shaped teeth, such that scintillation photons spread only in the x-direction in the upper halves of crystals and in the y-direction in lower halves. DOI positions can be estimated by considering the extent of two-dimensional light dispersion, which can be determined from the multiple anode outputs of a position-sensitive PMT placed under the crystal array. In the main simulation, a crystal block consisting of a 29 × 29 array of 1.5 mm × 1.5 mm × 20 mm crystals and a multi-anode PMT with 16 × 16 pixels were used. The effects of crystal size and non-uniform PMT output gain were also explored by simulation. The DOI resolution estimated for 1.5 × 1.5 × 20 mm3 crystals was 2.16 mm on average. Although the flood map was depth dependent, each crystal was well identified at all depths when a corner of the crystal array was irradiated with 511 keV gamma rays (peak-to-valley ratio ~9:1). DOI resolution was better than 3 mm up to a crystal length of 28 mm with a 1.5 × 1.5 mm2 or 2.0 × 2.0 mm2 crystal surface area. The devised light-sharing method allowed excellent DOI resolutions to be obtained without the use of dual-ended readout or multiple crystal arrays.

Applications of flood depth from rapid post-event footprint generation

NASA Astrophysics Data System (ADS)

Booth, Naomi; Millinship, Ian

2015-04-01

Immediately following large flood events, an indication of the area flooded (i.e. the flood footprint) can be extremely useful for evaluating potential impacts on exposed property and infrastructure. Specifically, such information can help insurance companies estimate overall potential losses, deploy claims adjusters and ultimately assists the timely payment of due compensation to the public. Developing these datasets from remotely sensed products seems like an obvious choice. However, there are a number of important drawbacks which limit their utility in the context of flood risk studies. For example, external agencies have no control over the region that is surveyed, the time at which it is surveyed (which is important as the maximum extent would ideally be captured), and how freely accessible the outputs are. Moreover, the spatial resolution of these datasets can be low, and considerable uncertainties in the flood extents exist where dry surfaces give similar return signals to water. Most importantly of all, flood depths are required to estimate potential damages, but generally cannot be estimated from satellite imagery alone. In response to these problems, we have developed an alternative methodology for developing high-resolution footprints of maximum flood extent which do contain depth information. For a particular event, once reports of heavy rainfall are received, we begin monitoring real-time flow data and extracting peak values across affected areas. Next, using statistical extreme value analyses of historic flow records at the same measured locations, the return periods of the maximum event flow at each gauged location are estimated. These return periods are then interpolated along each river and matched to JBA's high-resolution hazard maps, which already exist for a series of design return periods. The extent and depth of flooding associated with the event flow is extracted from the hazard maps to create a flood footprint. Georeferenced ground, aerial and satellite images are used to establish defence integrity, highlight breach locations and validate our footprint. We have implemented this method to create seven flood footprints, including river flooding in central Europe and coastal flooding associated with Storm Xaver in the UK (both in 2013). The inclusion of depth information allows damages to be simulated and compared to actual damage and resultant loss which become available after the event. In this way, we can evaluate depth-damage functions used in catastrophe models and reduce their associated uncertainty. In further studies, the depth data could be used at an individual property level to calibrate property type specific depth-damage functions.

Mapping snow depth within a tundra ecosystem using multiscale observations and Bayesian methods

DOE PAGES

Wainwright, Haruko M.; Liljedahl, Anna K.; Dafflon, Baptiste; ...

2017-04-03

This paper compares and integrates different strategies to characterize the variability of end-of-winter snow depth and its relationship to topography in ice-wedge polygon tundra of Arctic Alaska. Snow depth was measured using in situ snow depth probes and estimated using ground-penetrating radar (GPR) surveys and the photogrammetric detection and ranging (phodar) technique with an unmanned aerial system (UAS). We found that GPR data provided high-precision estimates of snow depth (RMSE=2.9cm), with a spatial sampling of 10cm along transects. Phodar-based approaches provided snow depth estimates in a less laborious manner compared to GPR and probing, while yielding a high precision (RMSE=6.0cm) andmore » a fine spatial sampling (4cm×4cm). We then investigated the spatial variability of snow depth and its correlation to micro- and macrotopography using the snow-free lidar digital elevation map (DEM) and the wavelet approach. We found that the end-of-winter snow depth was highly variable over short (several meter) distances, and the variability was correlated with microtopography. Microtopographic lows (i.e., troughs and centers of low-centered polygons) were filled in with snow, which resulted in a smooth and even snow surface following macrotopography. We developed and implemented a Bayesian approach to integrate the snow-free lidar DEM and multiscale measurements (probe and GPR) as well as the topographic correlation for estimating snow depth over the landscape. Our approach led to high-precision estimates of snow depth (RMSE=6.0cm), at 0.5m resolution and over the lidar domain (750m×700m).« less

Mapping snow depth within a tundra ecosystem using multiscale observations and Bayesian methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wainwright, Haruko M.; Liljedahl, Anna K.; Dafflon, Baptiste

This paper compares and integrates different strategies to characterize the variability of end-of-winter snow depth and its relationship to topography in ice-wedge polygon tundra of Arctic Alaska. Snow depth was measured using in situ snow depth probes and estimated using ground-penetrating radar (GPR) surveys and the photogrammetric detection and ranging (phodar) technique with an unmanned aerial system (UAS). We found that GPR data provided high-precision estimates of snow depth (RMSE=2.9cm), with a spatial sampling of 10cm along transects. Phodar-based approaches provided snow depth estimates in a less laborious manner compared to GPR and probing, while yielding a high precision (RMSE=6.0cm) andmore » a fine spatial sampling (4cm×4cm). We then investigated the spatial variability of snow depth and its correlation to micro- and macrotopography using the snow-free lidar digital elevation map (DEM) and the wavelet approach. We found that the end-of-winter snow depth was highly variable over short (several meter) distances, and the variability was correlated with microtopography. Microtopographic lows (i.e., troughs and centers of low-centered polygons) were filled in with snow, which resulted in a smooth and even snow surface following macrotopography. We developed and implemented a Bayesian approach to integrate the snow-free lidar DEM and multiscale measurements (probe and GPR) as well as the topographic correlation for estimating snow depth over the landscape. Our approach led to high-precision estimates of snow depth (RMSE=6.0cm), at 0.5m resolution and over the lidar domain (750m×700m).« less

Super-resolution in a defocused plenoptic camera: a wave-optics-based approach.

PubMed

Sahin, Erdem; Katkovnik, Vladimir; Gotchev, Atanas

2016-03-01

Plenoptic cameras enable the capture of a light field with a single device. However, with traditional light field rendering procedures, they can provide only low-resolution two-dimensional images. Super-resolution is considered to overcome this drawback. In this study, we present a super-resolution method for the defocused plenoptic camera (Plenoptic 1.0), where the imaging system is modeled using wave optics principles and utilizing low-resolution depth information of the scene. We are particularly interested in super-resolution of in-focus and near in-focus scene regions, which constitute the most challenging cases. The simulation results show that the employed wave-optics model makes super-resolution possible for such regions as long as sufficiently accurate depth information is available.

Timing properties of phosphor-coated polished LSO crystals.

PubMed

Schmall, Jeffrey P; Roncali, Emilie; Berg, Eric; Viswanath, Varsha; Du, Junwei; Cherry, Simon R

2014-08-07

This study investigates a time-of-flight (TOF)-depth-of-interaction (DOI) detector design for positron emission tomography (PET), based on phosphor-coated lutetium oxyorthosilicate (LSO) scintillator crystals coupled to fast single channel photomultiplier tubes. Interaction of the scintillation light with the phosphor coating changes the pulse shape in a depth-dependent manner. 3 × 3 × 10 mm(3) LSO scintillation crystals with polished surfaces were characterized, with and without phosphor coating, to assess DOI capability and timing properties. Two different phosphor coating geometries were studied: coating of the top surface of the crystal, and the top plus half of the crystal sides. There was negligible depth dependency in the decay time when coating only the top surface, however there was a ∼10 ns difference in end-to-end decay time when coating the top plus half of the crystal sides, sufficient to support the use of three DOI bins (3.3 mm DOI bin width). The rise time of the half-coated phosphor crystal was slightly faster at all depths, compared to uncoated crystals, however the signal amplitude was lower. Phosphor coating resulted in depth-dependent photopeak positions with an energy resolution of 13.7%, at a depth of 1 mm, and 15.3%, at a depth of 9 mm, for the half-coated crystal. Uncoated LSO crystals showed no change in photopeak position as a function of depth, with an energy resolution of 10.4%. The head-on coincidence timing resolution (CTR) of two uncoated LSO crystals was 287 ps using constant fraction discrimination for time pick-off. With phosphor coating, the CTR of the top-coated crystal was 314 ps, compared to 384 ps for the half-coated crystal. We demonstrate that the trade-off between timing resolution and DOI resolution can be controlled by the phosphor coating geometry. Here we present preliminary results demonstrating that good DOI resolution can be achieved with only a modest 26% degradation in CTR.

Consequences of flight height and line spacing on airborne (helicopter) gravity gradient resolution in the Great Sand Dunes National Park and Preserve, Colorado

USGS Publications Warehouse

Kass, M. Andy

2013-01-01

Line spacing and flight height are critical parameters in airborne gravity gradient surveys; the optimal trade-off between survey costs and desired resolution, however, is different for every situation. This article investigates the additional benefit of reducing the flight height and line spacing though a study of a survey conducted over the Great Sand Dunes National Park and Preserve, which is the highest-resolution public-domain airborne gravity gradient data set available, with overlapping high- and lower-resolution surveys. By using Fourier analysis and matched filtering, it is shown that while the lower-resolution survey delineates the target body, reducing the flight height from 80 m to 40 m and the line spacing from 100 m to 50 m improves the recoverable resolution even at basement depths.

Detection of proximal caries using digital radiographic systems with different resolutions.

PubMed

Nikneshan, Sima; Abbas, Fatemeh Mashhadi; Sabbagh, Sedigheh

2015-01-01

Dental radiography is an important tool for detection of caries and digital radiography is the latest advancement in this regard. Spatial resolution is a characteristic of digital receptors used for describing the quality of images. This study was aimed to compare the diagnostic accuracy of two digital radiographic systems with three different resolutions for detection of noncavitated proximal caries. Diagnostic accuracy. Seventy premolar teeth were mounted in 14 gypsum blocks. Digora; Optime and RVG Access were used for obtaining digital radiographs. Six observers evaluated the proximal surfaces in radiographs for each resolution in order to determine the depth of caries based on a 4-point scale. The teeth were then histologically sectioned, and the results of histologic analysis were considered as the gold standard. Data were entered using SPSS version 18 software and the Kruskal-Wallis test was used for data analysis. P <0.05 was considered as statistically significant. No significant difference was found between different resolutions for detection of proximal caries (P > 0.05). RVG access system had the highest specificity (87.7%) and Digora; Optime at high resolution had the lowest specificity (84.2%). Furthermore, Digora; Optime had higher sensitivity for detection of caries exceeding outer half of enamel. Judgment of oral radiologists for detection of the depth of caries had higher reliability than that of restorative dentistry specialists. The three resolutions of Digora; Optime and RVG access had similar accuracy in detection of noncavitated proximal caries.

Unravelling earth flow dynamics with 3-D time series derived from UAV-SfM models

NASA Astrophysics Data System (ADS)

Clapuyt, François; Vanacker, Veerle; Schlunegger, Fritz; Van Oost, Kristof

2017-12-01

Accurately assessing geo-hazards and quantifying landslide risks in mountainous environments are gaining importance in the context of the ongoing global warming. For an in-depth understanding of slope failure mechanisms, accurate monitoring of the mass movement topography at high spatial and temporal resolutions remains essential. The choice of the acquisition framework for high-resolution topographic reconstructions will mainly result from the trade-off between the spatial resolution needed and the extent of the study area. Recent advances in the development of unmanned aerial vehicle (UAV)-based image acquisition combined with the structure-from-motion (SfM) algorithm for three-dimensional (3-D) reconstruction make the UAV-SfM framework a competitive alternative to other high-resolution topographic techniques. In this study, we aim at gaining in-depth knowledge of the Schimbrig earthflow located in the foothills of the Central Swiss Alps by monitoring ground surface displacements at very high spatial and temporal resolution using the efficiency of the UAV-SfM framework. We produced distinct topographic datasets for three acquisition dates between 2013 and 2015 in order to conduct a comprehensive 3-D analysis of the landslide. Therefore, we computed (1) the sediment budget of the hillslope, and (2) the horizontal and (3) the three-dimensional surface displacements. The multitemporal UAV-SfM based topographic reconstructions allowed us to quantify rates of sediment redistribution and surface movements. Our data show that the Schimbrig earthflow is very active, with mean annual horizontal displacement ranging between 6 and 9 m. Combination and careful interpretation of high-resolution topographic analyses reveal the internal mechanisms of the earthflow and its complex rotational structure. In addition to variation in horizontal surface movements through time, we interestingly showed that the configuration of nested rotational units changes through time. Although there are major changes in the internal structure of the earthflow in the 2013-2015 period, the sediment budget of the drainage basin is nearly in equilibrium. As a consequence, our data show that the time lag between sediment mobilization by landslides and enhanced sediment fluxes in the river network can be considerable.

High-frequency ultrasonic imaging of the anterior segment using an annular array transducer.

PubMed

Silverman, Ronald H; Ketterling, Jeffrey A; Coleman, D Jackson

2007-04-01

Very high-frequency ultrasound (VHFU; >35 megahertz [MHz]) allows imaging of anterior segment structures of the eye with a resolution of less than 40 microm. The low focal ratio of VHFU transducers, however, results in a depth of field (DOF) of less than 1 mm. The aim was to develop a high-frequency annular array transducer for ocular imaging with improved DOF, sensitivity, and resolution compared with conventional transducers. Experimental study. Cadaver eyes, ex vivo cow eyes, in vivo rabbit eyes. A spherically curved annular array ultrasound transducer was fabricated. The array consisted of 5 concentric rings of equal area, had an overall aperture of 6 mm, and a geometric focus of 12 mm. The nominal center frequency of all array elements was 40 MHz. An experimental system was designed in which a single array element was pulsed and echo data were recorded from all elements. By sequentially pulsing each element, echo data were acquired for all 25 transmit-and-receive annuli combinations. The echo data then were focused synthetically and composite images were produced. Transducer operation was tested by scanning a test object consisting of a series of 25-microm diameter wires spaced at increasing range from the transducer. Imaging capabilities of the annular array were demonstrated in ex vivo bovine, in vivo rabbit, and human cadaver eyes. Depth of field, resolution, and sensitivity. The wire scans verified the operation of the array and demonstrated a 6.0-mm DOF, compared with the 1.0-mm DOF of a conventional single-element transducer of comparable frequency, aperture, and focal length. B-mode images of ex vivo bovine, in vivo rabbit, and cadaver eyes showed that although the single-element transducer had high sensitivity and resolution within 1 to 2 mm of its focus, the array with synthetic focusing maintained this quality over a 6-mm DOF. An annular array for high-resolution ocular imaging has been demonstrated. This technology offers improved DOF, sensitivity, and lateral resolution compared with single-element fixed focus transducers currently used for VHFU imaging of the eye.

Rapid 2D-to-3D conversion

NASA Astrophysics Data System (ADS)

Harman, Philip V.; Flack, Julien; Fox, Simon; Dowley, Mark

2002-05-01

The conversion of existing 2D images to 3D is proving commercially viable and fulfills the growing need for high quality stereoscopic images. This approach is particularly effective when creating content for the new generation of autostereoscopic displays that require multiple stereo images. The dominant technique for such content conversion is to develop a depth map for each frame of 2D material. The use of a depth map as part of the 2D to 3D conversion process has a number of desirable characteristics: 1. The resolution of the depth may be lower than that of the associated 2D image. 2. It can be highly compressed. 3. 2D compatibility is maintained. 4. Real time generation of stereo, or multiple stereo pairs, is possible. The main disadvantage has been the laborious nature of the manual conversion techniques used to create depth maps from existing 2D images, which results in a slow and costly process. An alternative, highly productive technique has been developed based upon the use of Machine Leaning Algorithm (MLAs). This paper describes the application of MLAs to the generation of depth maps and presents the results of the commercial application of this approach.

An image of the Columbia Plateau from inversion of high-resolution seismic data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lutter, W.J.; Catchings, R.D.; Jarchow, C.M.

1994-08-01

The authors use a method of traveltime inversion of high-resolution seismic data to provide the first reliable images of internal details of the Columbia River Basalt Group (CRBG), the subsurface basalt/sediment interface, and the deeper sediment/basement interface. Velocity structure within the basalts, delineated on the order of 1 km horizontally and 0.2 km vertically, is constrained to within [plus minus]0.1 km/s for most of the seismic profile. Over 5,000 observed traveltimes fit their model with an rms error of 0.018 s. The maximum depth of penetration of the basalt diving waves (truncated by underlying low-velocity sediments) provides a reliable estimatemore » of the depth to the base of the basalt, which agrees with well-log measurements to within 0.05 km (165 ft). The authors use image blurring, calculated from the resolution matrix, to estimate the aspect ratio of images velocity anomaly widths to true widths for velocity features within the basalt. From their calculations of image blurring, they interpret low velocity zones (LVZ) within the basalts at Boylston Mountain and the Whiskey Dick anticline to have widths of 4.5 and 3 km, respectively, within the upper 1.5 km of the model. At greater depth, the widths of these imaged LVZs thin to approximately 2 km or less. They interpret these linear, subparallel, low-velocity zones imaged adjacent to anticlines of the Yakima Fold Belt to be brecciated fault zones. These fault zones dip to the south at angles between 15 to 45 degrees.« less

Application of Rhizon Porewater Samplers to Shipboard Operations, IODP Expedition 308, Northeast Gulf of Mexico

NASA Astrophysics Data System (ADS)

Gilhooly, W. P.; Macko, S. A.; Flemings, P. B.

2005-12-01

Pleistocene and Recent sediments within the Brazos-Trinity and Ursa Basins (northwestern Gulf of Mexico) were largely deposited by turbidity currents and have been deformed by a number of mass transport events. The geochemical composition of interstitial waters was determined in order to assess fluid flow within these sediments. Typical porewater sampling resolution, using advanced piston coring and the traditional Manheim squeezer technique, is approximately one sample every other core (20m) with the highest working resolution at one sample every 1.5m. In this study, Rhizon soil moisture samplers were used to attain high-resolution porewater profiles within sea floor surface sediments and for permeable sediments at depth. The small dimensions (2mm x 30mm) and pore-size (1μm) of the devices enable high-frequency placement within a core, specific targeting of the sequence of interest, and do not require sediment removal from the core, or filtering of extracted porewaters. Initial shipboard analyses derived from sediments at the Ursa Basin (Site 1322) indicate a linear decrease in salinity with depth at U1322 where the overpressure gradient is thought to be greatest. The less saline waters with depth lends evidence for potential mixing between deep-seated fluids and low salinity ones derived from the Blue Unit and seawater. Isotopic composition and concentrations of sulfur species (SO4 and H2S) dissolved in porewaters, as well as, ionic compositions (Cl, Na, K, Ca, Mg) and chemical composition of associated sediments (%C, %N, 13C, and 15N) are compared with chemical results obtained with squeezers.

Quantitative assessment of rat corneal thickness and morphology during stem cell therapy by high-speed optical coherence tomography

NASA Astrophysics Data System (ADS)

Lal, Cerine; McGrath, James; Subhash, Hrebesh; Rani, Sweta; Ritter, Thomas; Leahy, Martin

2016-03-01

Optical Coherence Tomography (OCT) is a non-invasive 3 dimensional optical imaging modality that enables high resolution cross sectional imaging in biological tissues and materials. Its high axial and lateral resolution combined with high sensitivity, imaging depth and wide field of view makes it suitable for wide variety of high resolution medical imaging applications at clinically relevant speed. With the advent of swept source lasers, the imaging speed of OCT has increased considerably in recent years. OCT has been used in ophthalmology to study dynamic changes occurring in the cornea and iris, thereby providing physiological and pathological changes that occur within the anterior segment structures such as in glaucoma, during refractive surgery, lamellar keratoplasty and corneal diseases. In this study, we assess the changes in corneal thickness in the anterior segment of the eye during wound healing process in a rat corneal burn model following stem cell therapy using high speed swept source OCT.

Sea level history in 3D: Data acquisition and processing for an ultra-high resolution MCS survey across IODP Expedition 313 drillsite

NASA Astrophysics Data System (ADS)

Nedimovic, M. R.; Mountain, G. S.; Austin, J. A., Jr.; Fulthorpe, C.; Aali, M.; Baldwin, K.; Bhatnagar, T.; Johnson, C.; Küçük, H. M.; Newton, A.; Stanley, J.

2015-12-01

In June-July 2015, we acquired the first 3D/2D hybrid (short/long streamer) multichannel seismic (MCS) reflection dataset. These data were collected simultaneously across IODP Exp. 313 drillsites, off New Jersey, using R/V Langsethand cover ~95% of the planned 12x50 km box. Despite the large survey area, the lateral and vertical resolution for the 3D dataset is almost a magnitude of order higher than for data gathered for standard petroleum exploration. Such high-resolution was made possible by collection of common midpoint (CMP) lines whose combined length is ~3 times the Earth's circumference (~120,000 profile km) and a source rich in high-frequencies. We present details on the data acquisition, ongoing data analysis, and preliminary results. The science driving this project is presented by Mountain et al. The 3D component of this innovative survey used an athwartship cross cable, extended laterally by 2 barovanes roughly 357.5 m apart and trailed by 24 50-m P-Cables spaced ~12.5 m with near-trace offset of 53 m. Each P-Cable had 8 single hydrophone groups spaced at 6.25 m for a total of 192 channels. Record length was 4 s and sample rate 0.5 ms, with no low cut and an 824 Hz high cut filter. We ran 77 sail lines spaced ~150 m. Receiver locations were determined using 2 GPS receivers mounted on floats and 2 compasses and depth sensors per streamer. Streamer depths varied from 2.1 to 3.7 m. The 2D component used a single 3 km streamer, with 240 9-hydrophone groups spaced at 12.5 m, towed astern with near-trace offset of 229 m. The record length was 4 s and sample rate 0.5 ms, with low cut filter at 2 Hz and high cut at 412 Hz. Receiver locations were recorded using GPS at the head float and tail buoy, combined with 12 bird compasses spaced ~300 m. Nominal streamer depth was 4.5 m. The source for both systems was a 700 in3 linear array of 4 Bolt air guns suspended at 4.5 m towing depth, 271.5 m behind the ship's stern. Shot spacing was 12.5 m. Data analysis to prestack time migration is being carried out by Absolute Imaging, a commercial company. The shipboard QC analysis and brute stacks indicate that the final product will be superb. Key advantages of the hybrid 3D/2D dataset are: (1) Velocity control from the 2D long-streamer data combined with the ultra-high resolution of the P-Cable 3D dataset; (2) Opportunity for prestack and poststack attribute analysis.

Confocal reflectance quantitative phase microscope system for cellular membranes dynamics study (Conference Presentation)

NASA Astrophysics Data System (ADS)

Singh, Vijay Raj; Yaqoob, Zahid; So, Peter T. C.

2017-02-01

Quantitative phase microscopy (QPM) techniques developed so far primarily belongs to high speed transmitted light based systems that has enough sensitivity to resolve membrane fluctuations and dynamics, but has no depth resolution. Therefore, most biomechanics studies using QPM today is confined to simple cells, such as RBCs, without internal organelles. An important instrument that will greatly extend the biomedical applications of QPM is to develop next generation microscope with 3D capability and sufficient temporal resolution to study biomechanics of complex eukaryotic cells including the mechanics of their internal compartments. For eukaryotic cells, the depth sectioning capability is critical and should be sufficient to distinguish nucleic membrane fluctuations from plasma membrane fluctuations. Further, this microscope must provide high temporal resolution since typical eukaryotes membranes are substantially stiffer than RBCs. A confocal reflectance quantitative phase microscope is presented based on multi-pinhole scanning, with the capabilities of higher temporal resolution and sensitivity for nucleic and plasma membranes of eukaryotic cells. System hardware is developed based on an array of confocal pinhole generated by using the `ON' state of subset of micro-mirrors of digital micro-mirror device (DMD, from Texas Instruments) and high-speed raster scanning provides 14ms imaging speed in wide-field mode. A common path interferometer is integrated at the imaging arm for detection of specimens' quantitative phase information. Theoretical investigation of quantitative phase reconstructed from system is investigated and application of system is presented for dimensional fluctuations measurements of both cellular plasma and nucleic membranes of embryonic stem cells.

Green Bay: Spatial patterns in water quality and landscape correlations

EPA Science Inventory

We conducted a high-resolution survey along the nearshore (369 km) in Green Bay using towed electronic instrumentation at approximately the 15 m depth contour, with additional transects of the bay that were oriented cross-contour (49 km). Electronic sensor data provided an effic...

SPED light sheet microscopy: fast mapping of biological system structure and function

PubMed Central

Tomer, Raju; Lovett-Barron, Matthew; Kauvar, Isaac; Andalman, Aaron; Burns, Vanessa M.; Sankaran, Sethuraman; Grosenick, Logan; Broxton, Michael; Yang, Samuel; Deisseroth, Karl

2016-01-01

The goal of understanding living nervous systems has driven interest in high-speed and large field-of-view volumetric imaging at cellular resolution. Light-sheet microscopy approaches have emerged for cellular-resolution functional brain imaging in small organisms such as larval zebrafish, but remain fundamentally limited in speed. Here we have developed SPED light sheet microscopy, which combines large volumetric field-of-view via an extended depth of field with the optical sectioning of light sheet microscopy, thereby eliminating the need to physically scan detection objectives for volumetric imaging. SPED enables scanning of thousands of volumes-per-second, limited only by camera acquisition rate, through the harnessing of optical mechanisms that normally result in unwanted spherical aberrations. We demonstrate capabilities of SPED microscopy by performing fast sub-cellular resolution imaging of CLARITY mouse brains and cellular-resolution volumetric Ca2+ imaging of entire zebrafish nervous systems. Together, SPED light sheet methods enable high-speed cellular-resolution volumetric mapping of biological system structure and function. PMID:26687363

Clinical combination of multiphoton tomography and high frequency ultrasound imaging for evaluation of skin diseases

NASA Astrophysics Data System (ADS)

König, K.; Speicher, M.; Koehler, M. J.; Scharenberg, R.; Elsner, P.; Kaatz, M.

2010-02-01

For the first time, high frequency ultrasound imaging, multiphoton tomography, and dermoscopy were combined in a clinical study. Different dermatoses such as benign and malign skin cancers, connective tissue diseases, inflammatory skin diseases and autoimmune bullous skin diseases have been investigated with (i) state-of-the-art and highly sophisticated ultrasound systems for dermatology, (ii) the femtosecond-laser multiphoton tomograph DermaInspectTM and (iii) dermoscopes. Dermoscopy provides two-dimensional color imaging of the skin surface with a magnification up to 70x. Ultrasound images are generated from reflections of the emitted ultrasound signal, based on inhomogeneities of the tissue. These echoes are converted to electrical signals. Depending on the ultrasound frequency the penetration depth varies from about 1 mm to 16 mm in dermatological application. The 100-MHz-ultrasound system provided an axial resolution down to 16 μm and a lateral resolution down to 32 μm. In contrast to the wide-field ultrasound images, multiphoton tomography provided horizontal optical sections of 0.36×0.36 mm2 down to 200 μm tissue depth with submicron resolution. The autofluorescence of mitochondrial coenzymes, melanin, and elastin as well as the secondharmonic- generation signal of the collagen network were imaged. The combination of ultrasound and multiphoton tomography provides a novel opportunity for diagnostics of skin disorders.

Development of multifunctional optical coherence tomography and application to mouse myocardial infarction model in vivo (Conference Presentation)

NASA Astrophysics Data System (ADS)

Jang, Sun-Joo; Park, Taejin; Shin, Inho; Park, Hyun Sang; Shin, Paul; Oh, Wang-Yuhl

2016-02-01

Optical coherence tomography (OCT) is a useful imaging method for in vivo tissue imaging with deep penetration and high spatial resolution. However, imaging of the beating mouse heart is still challenging due to limited temporal resolution or penetration depth. Here, we demonstrate a multifunctional OCT system for a beating mouse heart, providing various types of visual information about heart pathophysiology with high spatiotemporal resolution and deep tissue imaging. Angiographic imaging and polarization-sensitive (PS) imaging were implemented with the electrocardiogram (ECG)-triggered beam scanning scheme on the high-speed OCT platform (A-line rate: 240 kHz). Depth-resolved local birefringence and the local orientation of the mouse myocardial fiber were visualized from the PS-OCT. ECG-triggered angiographic OCT (AOCT) with the custom-built motion stabilization imaging window provided myocardial vasculature of a beating mouse heart. Mice underwent coronary artery ligation to derive myocardial infarction (MI) and were imaged with the multifunctional OCT system at multiple time points. AOCT and PS-OCT visualize change of functionality of coronary vessels and myocardium respectively at different phases (acute and chronic) of MI in an ischemic mouse heart. Taken together, the integrated imaging of PS-OCT and AOCT would play an important role in study of MI providing multi-dimensional information of the ischemic mouse heart in vivo.

Improved axial resolution of FINCH fluorescence microscopy when combined with spinning disk confocal microscopy.

PubMed

Siegel, Nisan; Brooker, Gary

2014-09-22

FINCH holographic fluorescence microscopy creates super-resolved images with enhanced depth of focus. Addition of a Nipkow disk real-time confocal image scanner is shown to reduce the FINCH depth of focus while improving transverse confocal resolution in a combined method called "CINCH".

Electrical resistivity imaging in transmission between surface and underground tunnel for fault characterization

NASA Astrophysics Data System (ADS)

Lesparre, N.; Boyle, A.; Grychtol, B.; Cabrera, J.; Marteau, J.; Adler, A.

2016-05-01

Electrical resistivity images supply information on sub-surface structures and are classically performed to characterize faults geometry. Here we use the presence of a tunnel intersecting a regional fault to inject electrical currents between surface and the tunnel to improve the image resolution at depth. We apply an original methodology for defining the inversion parametrization based on pilot points to better deal with the heterogeneous sounding of the medium. An increased region of high spatial resolution is shown by analysis of point spread functions as well as inversion of synthetics. Such evaluations highlight the advantages of using transmission measurements by transferring a few electrodes from the main profile to increase the sounding depth. Based on the resulting image we propose a revised structure for the medium surrounding the Cernon fault supported by geological observations and muon flux measurements.

Fiber-optic annular detector array for large depth of field photoacoustic macroscopy.

PubMed

Bauer-Marschallinger, Johannes; Höllinger, Astrid; Jakoby, Bernhard; Burgholzer, Peter; Berer, Thomas

2017-03-01

We report on a novel imaging system for large depth of field photoacoustic scanning macroscopy. Instead of commonly used piezoelectric transducers, fiber-optic based ultrasound detection is applied. The optical fibers are shaped into rings and mainly receive ultrasonic signals stemming from the ring symmetry axes. Four concentric fiber-optic rings with varying diameters are used in order to increase the image quality. Imaging artifacts, originating from the off-axis sensitivity of the rings, are reduced by coherence weighting. We discuss the working principle of the system and present experimental results on tissue mimicking phantoms. The lateral resolution is estimated to be below 200 μm at a depth of 1.5 cm and below 230 μm at a depth of 4.5 cm. The minimum detectable pressure is in the order of 3 Pa. The introduced method has the potential to provide larger imaging depths than acoustic resolution photoacoustic microscopy and an imaging resolution similar to that of photoacoustic computed tomography.

A 3D image sensor with adaptable charge subtraction scheme for background light suppression

NASA Astrophysics Data System (ADS)

Shin, Jungsoon; Kang, Byongmin; Lee, Keechang; Kim, James D. K.

2013-02-01

We present a 3D ToF (Time-of-Flight) image sensor with adaptive charge subtraction scheme for background light suppression. The proposed sensor can alternately capture high resolution color image and high quality depth map in each frame. In depth-mode, the sensor requires enough integration time for accurate depth acquisition, but saturation will occur in high background light illumination. We propose to divide the integration time into N sub-integration times adaptively. In each sub-integration time, our sensor captures an image without saturation and subtracts the charge to prevent the pixel from the saturation. In addition, the subtraction results are cumulated N times obtaining a final result image without background illumination at full integration time. Experimental results with our own ToF sensor show high background suppression performance. We also propose in-pixel storage and column-level subtraction circuit for chiplevel implementation of the proposed method. We believe the proposed scheme will enable 3D sensors to be used in out-door environment.

Thermographic imaging for high-temperature composite materials: A defect detection study

NASA Technical Reports Server (NTRS)

Roth, Don J.; Bodis, James R.; Bishop, Chip

1995-01-01

The ability of a thermographic imaging technique for detecting flat-bottom hole defects of various diameters and depths was evaluated in four composite systems (two types of ceramic matrix composites, one metal matrix composite, and one polymer matrix composite) of interest as high-temperature structural materials. The holes ranged from 1 to 13 mm in diameter and 0.1 to 2.5 mm in depth in samples approximately 2-3 mm thick. The thermographic imaging system utilized a scanning mirror optical system and infrared (IR) focusing lens in conjunction with a mercury cadmium telluride infrared detector element to obtain high resolution infrared images. High intensity flash lamps located on the same side as the infrared camera were used to heat the samples. After heating, up to 30 images were sequentially acquired at 70-150 msec intervals. Limits of detectability based on depth and diameter of the flat-bottom holes were defined for each composite material. Ultrasonic and radiographic images of the samples were obtained and compared with the thermographic images.

Improving lateral resolution and image quality of optical coherence tomography by the multi-frame superresolution technique for 3D tissue imaging.

PubMed

Shen, Kai; Lu, Hui; Baig, Sarfaraz; Wang, Michael R

2017-11-01

The multi-frame superresolution technique is introduced to significantly improve the lateral resolution and image quality of spectral domain optical coherence tomography (SD-OCT). Using several sets of low resolution C-scan 3D images with lateral sub-spot-spacing shifts on different sets, the multi-frame superresolution processing of these sets at each depth layer reconstructs a higher resolution and quality lateral image. Layer by layer processing yields an overall high lateral resolution and quality 3D image. In theory, the superresolution processing including deconvolution can solve the diffraction limit, lateral scan density and background noise problems together. In experiment, the improved lateral resolution by ~3 times reaching 7.81 µm and 2.19 µm using sample arm optics of 0.015 and 0.05 numerical aperture respectively as well as doubling the image quality has been confirmed by imaging a known resolution test target. Improved lateral resolution on in vitro skin C-scan images has been demonstrated. For in vivo 3D SD-OCT imaging of human skin, fingerprint and retina layer, we used the multi-modal volume registration method to effectively estimate the lateral image shifts among different C-scans due to random minor unintended live body motion. Further processing of these images generated high lateral resolution 3D images as well as high quality B-scan images of these in vivo tissues.

Along-strike slab segmentation under Greece from a 500 km long teleseismic receiver-function swath profile : control on large earthquakes, upper plate motion, and surface morphology

NASA Astrophysics Data System (ADS)

Sachpazi, M.; Laigle, M.; Diaz, J.; Gesret, A.; Charalampakis, M.; Kissling, E. H.; Hirn, A.

2010-12-01

Observations from teleseismic converted waves recorded at 100 sites in Greece from Crete to North Aegean in a 500 km swath along the slab strike during the EU project “Thales was right” allow imaging its top in 3D. Multiscale analysis brings high-resolution to interface imaging at depth which resolved for the first time a thin, oceanic, crust for the slab under southern Greece. This first indication of its large negative buoyancy suggests its roll-back and is consistent with the upper plate trenchward motion with the highest velocities there, as shown by GPS. With respect to up to now subduction zone surveys with receivers deployed along the presumed dip to get a cross-section of the downgoing slab, our swath was instead perpendicular, that is along strike. This was in order to track down lateral changes in slab attitude along the subduction zone, that is a possible segmentation. The expected subduction strike at shallow depth, as approximated by a line from SW of Crete to W of the Ionian Islands is about N 135°E. Instead, the slab top is found along an almost N-S line at several places, at 60-70 km depth. However the slab depth contours deviate from it in-between. Their broad correspondance with the Aegean coastline or extensional domain suggests a possible control on surface morphology, and on upper plate deformation as mirrored in the topography of its crust-mantle boundary. Indeed, this first image recovered with such a high lateral resolution reveals that several slab segments can be defined dipping N 60°E, that is with a N 160 °E strike, and that these are juxtaposed through domains of strong localized variations along-strike that suggest warping or tearing of the slab. Apart their strong bearing on geodynamic reconstructions, and the continental/oceanic nature of the slab fragments, these 3D images reach the high-resolution for their discussion with respect to major earthquakes. The attitude of the slab, the dip of its upper part and its buoyancy force enter the balance controlling the degree of seismic coupling, of the seismogenic interplate fault, as well as its along dip extent as discussed earlier for the Ionian Islands. The segmented nature revealed at depth suggests a possible segmentation of the shallower interplate seismogenic zone. The precise location of the stronger intermediate-depth earthquakes occurred during the deployment appears also related to this deep structural and tectonic control.

Wind-Stress Dust Lifting in a Mars Global Circulation Model: Representation across Resolutions

NASA Astrophysics Data System (ADS)

Chapman, R.; Lewis, S.; Balme, M. R.; Steele, L.

2017-12-01

The formation of Martian dust storms is believed to be driven by dust lifting by near-surface wind stress (NSWS). Accurately representing this dust lifting within Mars Global Circulation Models (MGCMs) is important in order to gain a full understanding of the Martian dust storm cycle. Parameterisations of dust lifting by NSWS exist within several MGCMs; implementations differ but they all follow a similar design, so progress within one model is relevant to the entire field. Few studies have explored in detail how the results of these parameterisations can be affected by changing the horizontal resolution of the model. An accurate parameterisation of dust lifting by NSWS will lift a representative dust mass, reproducing characteristic dust optical depths in the atmosphere. The geographical distribution of the dust lifting by NSWS will also change throughout the year, affecting patterns of dust storm formation and development. Currently, suitable values for dust lifting parameters must be identified at every new model resolution. Resolutions of 5° latitude x 5° longitude are often used to model the Martian climate, as thermal tides and long-term weather patterns can be well represented at this resolution. However, smaller scale phenomena (such as near-surface winds driven by local topography) cannot be accurately depicted at this resolution. We use the LMD-UK MGCM to complete multi-year simulations across multiple model resolutions. Our experiments range from `low' resolution 5° lat x 5° lon to `high' resolution 1° lat x 1° lon. In experiments with fixed, constant lifting parameters, we find that higher resolution simulations lift more dust, but that this trend is asymptotic. At low resolutions, dust lifting increases proportionately with the increase in number of horizontal gridboxes. However, at high resolutions, doubling the number of gridboxes results only in a 30% increase in the total dust mass lifted. Geographical and temporal distributions of dust lifting are investigated, as well as the total dust lifted, in order to assess the optimum parameters for each resolution, and to develop a calibration scheme for this dust lifting across model resolutions. The scheme is verified through comparison with spacecraft observations of dust optical depths and dust storm locations.

Enhanced Axial Resolution of Wide-Field Two-Photon Excitation Microscopy by Line Scanning Using a Digital Micromirror Device.

PubMed

Park, Jong Kang; Rowlands, Christopher J; So, Peter T C

2017-01-01

Temporal focusing multiphoton microscopy is a technique for performing highly parallelized multiphoton microscopy while still maintaining depth discrimination. While the conventional wide-field configuration for temporal focusing suffers from sub-optimal axial resolution, line scanning temporal focusing, implemented here using a digital micromirror device (DMD), can provide substantial improvement. The DMD-based line scanning temporal focusing technique dynamically trades off the degree of parallelization, and hence imaging speed, for axial resolution, allowing performance parameters to be adapted to the experimental requirements. We demonstrate this new instrument in calibration specimens and in biological specimens, including a mouse kidney slice.

Enhanced Axial Resolution of Wide-Field Two-Photon Excitation Microscopy by Line Scanning Using a Digital Micromirror Device

PubMed Central

Park, Jong Kang; Rowlands, Christopher J.; So, Peter T. C.

2017-01-01

Temporal focusing multiphoton microscopy is a technique for performing highly parallelized multiphoton microscopy while still maintaining depth discrimination. While the conventional wide-field configuration for temporal focusing suffers from sub-optimal axial resolution, line scanning temporal focusing, implemented here using a digital micromirror device (DMD), can provide substantial improvement. The DMD-based line scanning temporal focusing technique dynamically trades off the degree of parallelization, and hence imaging speed, for axial resolution, allowing performance parameters to be adapted to the experimental requirements. We demonstrate this new instrument in calibration specimens and in biological specimens, including a mouse kidney slice. PMID:29387484

Burn depth determination using high-speed polarization-sensitive Mueller optical coherence tomography with continuous polarization modulation

NASA Astrophysics Data System (ADS)

Todorović, Miloš; Ai, Jun; Pereda Cubian, David; Stoica, George; Wang, Lihong

2006-02-01

National Health Interview Survey (NHIS) estimates more than 1.1 million burn injuries per year in the United States, with nearly 15,000 fatalities from wounds and related complications. An imaging modality capable of evaluating burn depths non-invasively is the polarization-sensitive optical coherence tomography. We report on the use of a high-speed, fiber-based Mueller-matrix OCT system with continuous source-polarization modulation for burn depth evaluation. The new system is capable of imaging at near video-quality frame rates (8 frames per second) with resolution of 10 μm in biological tissue (index of refraction: 1.4) and sensitivity of 78 dB. The sample arm optics is integrated in a hand-held probe simplifying the in vivo experiments. The applicability of the system for burn depth determination is demonstrated using biological samples of porcine tendon and porcine skin. The results show an improved imaging depth (1 mm in tendon) and a clear localization of the thermally damaged region. The burnt area determined from OCT images compares well with the histology, thus proving the system's potential for burn depth determination.

A new omni-directional multi-camera system for high resolution surveillance

NASA Astrophysics Data System (ADS)

Cogal, Omer; Akin, Abdulkadir; Seyid, Kerem; Popovic, Vladan; Schmid, Alexandre; Ott, Beat; Wellig, Peter; Leblebici, Yusuf

2014-05-01

Omni-directional high resolution surveillance has a wide application range in defense and security fields. Early systems used for this purpose are based on parabolic mirror or fisheye lens where distortion due to the nature of the optical elements cannot be avoided. Moreover, in such systems, the image resolution is limited to a single image sensor's image resolution. Recently, the Panoptic camera approach that mimics the eyes of flying insects using multiple imagers has been presented. This approach features a novel solution for constructing a spherically arranged wide FOV plenoptic imaging system where the omni-directional image quality is limited by low-end sensors. In this paper, an overview of current Panoptic camera designs is provided. New results for a very-high resolution visible spectrum imaging and recording system inspired from the Panoptic approach are presented. The GigaEye-1 system, with 44 single cameras and 22 FPGAs, is capable of recording omni-directional video in a 360°×100° FOV at 9.5 fps with a resolution over (17,700×4,650) pixels (82.3MP). Real-time video capturing capability is also verified at 30 fps for a resolution over (9,000×2,400) pixels (21.6MP). The next generation system with significantly higher resolution and real-time processing capacity, called GigaEye-2, is currently under development. The important capacity of GigaEye-1 opens the door to various post-processing techniques in surveillance domain such as large perimeter object tracking, very-high resolution depth map estimation and high dynamicrange imaging which are beyond standard stitching and panorama generation methods.

Linking microbial heterotrophic activity and sediment lithology in oxic, oligotrophic sub-seafloor sediments of the north atlantic ocean.

PubMed

Picard, Aude; Ferdelman, Timothy G

2011-01-01

Microbial heterotrophic activity was investigated in oxic sub-seafloor sediments at North Pond, a sediment pond situated at 23°N on the western flank of the Mid-Atlantic Ridge. The North Pond sediments underlie the oligotrophic North Atlantic Gyre at 4580-m water depth and cover a 7-8 million-year-old basaltic crust aquifer through which seawater flows. Discrete samples for experimentation were obtained from up to ~9 m-long gravity cores taken at 14 stations in the North Pond area. Potential respiration rates were determined in sediment slurries incubated under aerobic conditions with (14)C-acetate. Microbial heterotrophic activity, as defined by oxidation of acetate to CO(2) (with O(2) as electron acceptor), was detected in all 14 stations and all depths sampled. Potential respiration rates were generally low (<0.2 nmol of respired acetate cm(-3) d(-1)) in the sediment, but indicate that microbial heterotrophic activity occurs in deep-sea, oxic, sub-seafloor sediments. Furthermore, discernable differences in activity existed between sites and within given depth profiles. At seven stations, activity was increased by several orders of magnitude at depth (up to ~12 nmol of acetate respired cm(-3) d(-1)). We attempted to correlate the measures of activity with high-resolution color and element stratigraphy. Increased activities at certain depths may be correlated to variations in the sediment geology, i.e., to the presence of dark clay-rich layers, of sandy layers, or within clay-rich horizons presumably overlying basalts. This would suggest that the distribution of microbial heterotrophic activity in deeply buried sediments may be linked to specific lithologies. Nevertheless, high-resolution microbial examination at the level currently enjoyed by sedimentologists will be required to fully explore this link.

Linking Microbial Heterotrophic Activity and Sediment Lithology in Oxic, Oligotrophic Sub-Seafloor Sediments of the North Atlantic Ocean

PubMed Central

Picard, Aude; Ferdelman, Timothy G.

2011-01-01

Microbial heterotrophic activity was investigated in oxic sub-seafloor sediments at North Pond, a sediment pond situated at 23°N on the western flank of the Mid-Atlantic Ridge. The North Pond sediments underlie the oligotrophic North Atlantic Gyre at 4580-m water depth and cover a 7–8 million-year-old basaltic crust aquifer through which seawater flows. Discrete samples for experimentation were obtained from up to ~9 m-long gravity cores taken at 14 stations in the North Pond area. Potential respiration rates were determined in sediment slurries incubated under aerobic conditions with 14C-acetate. Microbial heterotrophic activity, as defined by oxidation of acetate to CO2 (with O2 as electron acceptor), was detected in all 14 stations and all depths sampled. Potential respiration rates were generally low (<0.2 nmol of respired acetate cm−3 d−1) in the sediment, but indicate that microbial heterotrophic activity occurs in deep-sea, oxic, sub-seafloor sediments. Furthermore, discernable differences in activity existed between sites and within given depth profiles. At seven stations, activity was increased by several orders of magnitude at depth (up to ~12 nmol of acetate respired cm−3 d−1). We attempted to correlate the measures of activity with high-resolution color and element stratigraphy. Increased activities at certain depths may be correlated to variations in the sediment geology, i.e., to the presence of dark clay-rich layers, of sandy layers, or within clay-rich horizons presumably overlying basalts. This would suggest that the distribution of microbial heterotrophic activity in deeply buried sediments may be linked to specific lithologies. Nevertheless, high-resolution microbial examination at the level currently enjoyed by sedimentologists will be required to fully explore this link. PMID:22207869

High-resolution high-efficiency multilayer Fresnel zone plates for soft and hard x-rays

NASA Astrophysics Data System (ADS)

Sanli, Umut T.; Keskinbora, Kahraman; Gregorczyk, Keith; Leister, Jonas; Teeny, Nicolas; Grévent, Corinne; Knez, Mato; Schütz, Gisela

2015-09-01

X-ray microscopy enables high spatial resolutions, high penetration depths and characterization of a broad range of materials. Calculations show that nanometer range resolution is achievable in the hard X-ray regime by using Fresnel zone plates (FZPs) if certain conditions are satisfied. However, this requires, among other things, aspect ratios of several thousands. The multilayer (ML) type FZPs, having virtually unlimited aspect ratios, are strong candidates to achieve single nanometer resolutions. Our research is focused on the fabrication of ML-FZPs which encompasses deposition of multilayers over a glass fiber via the atomic layer deposition (ALD), which is subsequently sliced in the optimum thickness for the X-ray energy by a focused ion beam (FIB). We recently achieved aberration free imaging by resolving 21 nm features with an efficiency of up to 12.5 %, the highest imaging resolution achieved by an ML-FZP. We also showed efficient focusing of 7.9 keV X-rays down to 30 nm focal spot size (FWHM). For resolutions below ~10 nm, efficiencies would decrease significantly due to wave coupling effects. To compensate this effect high efficiency, low stress materials have to be researched, as lower intrinsic stresses will allow fabrication of larger FZPs with higher number of zones, leading to high light intensity at the focus. As a first step we fabricated an ML-FZP with a diameter of 62 μm, an outermost zone width of 12 nm and 452 active zones. Further strategies for fabrication of high resolution high efficiency multilayer FZPs will also be discussed.

Exploring Sedimentary Basins with High Frequency Receiver Function: the Dublin Basin Case Study

NASA Astrophysics Data System (ADS)

Licciardi, A.; Piana Agostinetti, N.

2015-12-01

The Receiver Function (RF) method is a widely applied seismological tool for the imaging of crustal and lithospheric structures beneath a single seismic station with one to tens kilometers of vertical resolution. However, detailed information about the upper crust (0-10 km depth) can also be retrieved by increasing the frequency content of the analyzed RF data-set (with a vertical resolution lower than 0.5km). This information includes depth of velocity contrasts, S-wave velocities within layers, as well as presence and location of seismic anisotropy or dipping interfaces (e.g., induced by faulting) at depth. These observables provides valuable constraints on the structural settings and properties of sedimentary basins both for scientific and industrial applications. To test the RF capabilities for this high resolution application, six broadband seismic stations have been deployed across the southwestern margin of the Dublin Basin (DB), Ireland, whose geothermal potential has been investigated in the last few years. With an inter-station distance of about 1km, this closely spaced array has been designed to provide a clear picture of the structural transition between the margin and the inner portion of the basin. In this study, a Bayesian approach is used to retrieve the posterior probability distributions of S-wave velocity at depth beneath each seismic station. A multi-frequency RF data-set is analyzed and RF and curves of apparent velocity are jointly inverted to better constrain absolute velocity variations. A pseudo 2D section is built to observe the lateral changes in elastic properties across the margin of the basin with a focus in the shallow portion of the crust. Moreover, by means of the harmonic decomposition technique, the azimuthal variations in the RF data-set are isolated and interpreted in terms of anisotropy and dipping interfaces associated with the major fault system in the area. These results are compared with the available information from previous seismic active surveys in the area, including boreholes data.

In-Situ Wave Observations in the High Resolution Air-Sea Interaction DRI

DTIC Science & Technology

2007-09-30

directional spectra extracted from the Coastal Data Information Program ( CDIP ) Harvest buoy located in 204 m depth off Point Conception. The initial sea...frequency-directional wave spectra (source: CDIP ). Upper panels: Typical summer-time South swell in the presence of a light North-West wind sea

Depth-related gradients of viral activity in Lake Pavin.

PubMed

Colombet, J; Sime-Ngando, T; Cauchie, H M; Fonty, G; Hoffmann, L; Demeure, G

2006-06-01

High-resolution vertical sampling and determination of viral and prokaryotic parameters in a deep volcanic lake shows that in the absence of thermal stratification but within light, oxygen, and chlorophyll gradients, host availability empirically is prevalent over the physical and chemical environments and favors lytic over lysogenic "viral life cycles."

Lake Michigan: Nearshore variability and a nearshore-offshore distinction in water quality

EPA Science Inventory

We conducted a high-resolution survey of the Lake Michigan nearshore using towed electronic instrumentation and fixed station sampling (1049 km at the approximate 20-m depth contour and grab samples at 15 sites). The principal variability in the alongshore reach was generally re...

Brain refractive index measured in vivo with high-NA defocus-corrected full-field OCT and consequences for two-photon microscopy.

PubMed

Binding, Jonas; Ben Arous, Juliette; Léger, Jean-François; Gigan, Sylvain; Boccara, Claude; Bourdieu, Laurent

2011-03-14

Two-photon laser scanning microscopy (2PLSM) is an important tool for in vivo tissue imaging with sub-cellular resolution, but the penetration depth of current systems is potentially limited by sample-induced optical aberrations. To quantify these, we measured the refractive index n' in the somatosensory cortex of 7 rats in vivo using defocus optimization in full-field optical coherence tomography (ff-OCT). We found n' to be independent of imaging depth or rat age. From these measurements, we calculated that two-photon imaging beyond 200 µm into the cortex is limited by spherical aberration, indicating that adaptive optics will improve imaging depth.

Interferometric temporal focusing microscopy using three-photon excitation fluorescence.

PubMed

Toda, Keisuke; Isobe, Keisuke; Namiki, Kana; Kawano, Hiroyuki; Miyawaki, Atsushi; Midorikawa, Katsumi

2018-04-01

Super-resolution microscopy has become a powerful tool for biological research. However, its spatial resolution and imaging depth are limited, largely due to background light. Interferometric temporal focusing (ITF) microscopy, which combines structured illumination microscopy and three-photon excitation fluorescence microscopy, can overcome these limitations. Here, we demonstrate ITF microscopy using three-photon excitation fluorescence, which has a spatial resolution of 106 nm at an imaging depth of 100 µm with an excitation wavelength of 1060 nm.

Restoring the spatial resolution of refocus images on 4D light field

NASA Astrophysics Data System (ADS)

Lim, JaeGuyn; Park, ByungKwan; Kang, JooYoung; Lee, SeongDeok

2010-01-01

This paper presents the method for generating a refocus image with restored spatial resolution on a plenoptic camera, which functions controlling the depth of field after capturing one image unlike a traditional camera. It is generally known that the camera captures 4D light field (angular and spatial information of light) within a limited 2D sensor and results in reducing 2D spatial resolution due to inevitable 2D angular data. That's the reason why a refocus image is composed of a low spatial resolution compared with 2D sensor. However, it has recently been known that angular data contain sub-pixel spatial information such that the spatial resolution of 4D light field can be increased. We exploit the fact for improving the spatial resolution of a refocus image. We have experimentally scrutinized that the spatial information is different according to the depth of objects from a camera. So, from the selection of refocused regions (corresponding depth), we use corresponding pre-estimated sub-pixel spatial information for reconstructing spatial resolution of the regions. Meanwhile other regions maintain out-of-focus. Our experimental results show the effect of this proposed method compared to existing method.

Airborne Hydromapping - How high-resolution bathymetric surveys will change the research and work focused on waterbody-related topics

NASA Astrophysics Data System (ADS)

Steinbacher, Frank; Baran, Ramona; Dobler, Wolfgang; Aufleger, Markus

2013-04-01

Repetitive surveying of inshore waters and coastal zones is becoming more and more essential in order to evaluate water-level dynamics, structural and zonal variations of rivers and riparian areas, river degradation, water flow, reservoir sedimentation, delta growth, as well as coastal processes. This can only be achieved in an effective manner by employing hydrographic airborne laser scanning (hydromapping). A new laser scanner is introduced, which has been specifically designed for the acquisition of high-resolution hydrographic data in order to survey and monitor inland waters and shallow coastal zones. Recently, this scanner has been developed within the framework of an Austrian research cooperation between Riegl LMS and the Unit of Hydraulic Engineering at the University of Innsbruck. We present exemplary measurement results obtained with the compact airborne laser-scanning system during our project work. Along the Baltic Sea coast northeast of Kiel city, northern Germany, we obtained measurement depths up to 8 m under clear-water conditions. Moreover, we detect underwater dune-structures and the accumulation of sediment within groin structures. In contrast, under turbid water conditions we obtained depths of approximately 3 m along the Rhine River at Rheinfelden, German-Swiss border east of Basel city. Nevertheless, we were able to map small-scale and complex morphologic features within a fish ramp or bedrock cliffs. The laser data had been combined with sonar measurements displaying the bathymetry at depths of ca. 2-25 m in order to document comprehensively the actual hydrographic setting after the new construction of the hydropower plant Rheinfelden. In summary, a high-resolution spatial view on the ground of various waterbodies is now possible for the first time with point densities in the usual range of approximately 10-20 points/m². However, the combination of these data with high-resolution aerial (approximately < 5 cm/pixel) or spectral images offers a variety of new opportunities for further analysis. Lastly, the combined datasets - all of them captured during a single flight including topography, bathymetry, aerial and spectral pictures - provide a comprehensive and homogeneous database for the detailed and precise description of river- or coastal-bed hydraulic, morphologic and ecohydraulic processes. The high density and accuracy (less than 10 cm) of information offer the extended possibility for monitoring and supervisory purposes.

Improved axial resolution of FINCH fluorescence microscopy when combined with spinning disk confocal microscopy

PubMed Central

Siegel, Nisan; Brooker, Gary

2014-01-01

FINCH holographic fluorescence microscopy creates super-resolved images with enhanced depth of focus. Addition of a Nipkow disk real-time confocal image scanner is shown to reduce the FINCH depth of focus while improving transverse confocal resolution in a combined method called “CINCH”. PMID:25321701

In-line three-dimensional holography of nanocrystalline objects at atomic resolution

PubMed Central

Chen, F.-R.; Van Dyck, D.; Kisielowski, C.

2016-01-01

Resolution and sensitivity of the latest generation aberration-corrected transmission electron microscopes allow the vast majority of single atoms to be imaged with sub-Ångstrom resolution and their locations determined in an image plane with a precision that exceeds the 1.9-pm wavelength of 300 kV electrons. Such unprecedented performance allows expansion of electron microscopic investigations with atomic resolution into the third dimension. Here we report a general tomographic method to recover the three-dimensional shape of a crystalline particle from high-resolution images of a single projection without the need for sample rotation. The method is compatible with low dose rate electron microscopy, which improves on signal quality, while minimizing electron beam-induced structure modifications even for small particles or surfaces. We apply it to germanium, gold and magnesium oxide particles, and achieve a depth resolution of 1–2 Å, which is smaller than inter-atomic distances. PMID:26887849

Development of an Integrated Modeling Framework for Simulations of Coastal Processes in Deltaic Environments Using High-Performance Computing

DTIC Science & Technology

2008-01-01

exceeds the local water depth. The approximation eliminates the vertical dimension of the elliptic equation that is normally required for the fully non...used for vertical resolution. The shallow water equations (SWE) are a set of non-linear hyperbolic equations. As the equations are derived under...linear standing wave with a wavelength of 10 m in a square 10 m by 10 m basin. The still water depth is 0.5 m. In order to compare with the analytical

Multichannel analysis of surface waves (MASW) - Active and passive methods

USGS Publications Warehouse

Park, C.B.; Miller, R.D.; Xia, J.; Ivanov, J.

2007-01-01

The conventional seismic approaches for near-surface investigation have usually been either high-resolution reflection or refraction surveys that deal with a depth range of a few tens to hundreds meters. Seismic signals from these surveys consist of wavelets with frequencies higher than 50 Hz. The multichannel analysis of surface waves (MASW) method deals with surface waves in the lower frequencies (e.g., 1-30 Hz) and uses a much shallower depth range of investigation (e.g., a few to a few tens of meters). ?? 2007 Society of Exploration Geophysicists.

Automatic Focusing for a 675 GHz Imaging Radar with Target Standoff Distances from 14 to 34 Meters

NASA Technical Reports Server (NTRS)

Tang, Adrian; Cooper, Ken B.; Dengler, Robert J.; Llombart, Nuria; Siegel, Peter H.

2013-01-01

This paper dicusses the issue of limited focal depth for high-resolution imaging radar operating over a wide range of standoff distances. We describe a technique for automatically focusing a THz imaging radar system using translational optics combined with range estimation based on a reduced chirp bandwidth setting. The demonstarted focusing algorithm estimates the correct focal depth for desired targets in the field of view at unknown standoffs and in the presence of clutter to provide good imagery at 14 to 30 meters of standoff.

Correlation mapping microscopy

NASA Astrophysics Data System (ADS)

McGrath, James; Alexandrov, Sergey; Owens, Peter; Subhash, Hrebesh M.; Leahy, Martin J.

2015-03-01

Changes in the microcirculation are associated with conditions such as Raynauds disease. Current modalities used to assess the microcirculation such as nailfold capillaroscopy are limited due to their depth ambiguity. A correlation mapping technique was recently developed to extend the capabilities of Optical Coherence Tomography to generate depth resolved images of the microcirculation. Here we present the extension of this technique to microscopy modalities, including confocal microscopy. It is shown that this correlation mapping microscopy technique can extend the capabilities of conventional microscopy to enable mapping of vascular networks in vivo with high spatial resolution.

High-resolution monitoring across the soil-groundwater interface - Revealing small-scale hydrochemical patterns with a novel multi-level well

NASA Astrophysics Data System (ADS)

Gassen, Niklas; Griebler, Christian; Stumpp, Christine

2016-04-01

Biogeochemical turnover processes in the subsurface are highly variable both in time and space. In order to capture this variability, high resolution monitoring systems are required. Particular in riparian zones the understanding of small-scale biogeochemical processes is of interest, as they are regarded as important buffer zones for nutrients and contaminants with high turnover rates. To date, riparian research has focused on influences of groundwater-surface water interactions on element cycling, but little is known about processes occurring at the interface between the saturated and the unsaturated zone during dynamic flow conditions. Therefore, we developed a new type of high resolution multi-level well (HR-MLW) that has been installed in the riparian zone of the Selke river. This HR-MLW for the first time enables to derive water samples both from the unsaturated and the saturated zone across one vertical profile with a spatial vertical resolution of 0.05 to 0.5 m to a depth of 4 m b.l.s. Water samples from the unsaturated zone are extracted via suction cup sampling. Samples from the saturated zone are withdrawn through glass filters and steel capillaries. Both, ceramic cups and glass filters, are installed along a 1" HDPE piezometer tube. First high resolution hydrochemical profiles revealed a distinct depth-zonation in the riparian alluvial aquifer. A shallow zone beneath the water table carried a signature isotopically and hydrochemically similar to the nearby river, while layers below 1.5 m were influenced by regional groundwater. This zonation showed temporal dynamics related to groundwater table fluctuations and microbial turnover processes. The HR-MLW delivered new insight into mixing and turnover processes between riverwater and groundwater in riparian zones, both in a temporal and spatial dimension. With these new insights, we are able to improve our understanding of dynamic turnover processes at the soil - groundwater interface and of surface -groundwater interactions in riparian zones. In the future, a better prediction and targeted management of buffer mechanisms in riparian zones will be possible.

Depth Estimation of Submerged Aquatic Vegetation in Clear Water Streams Using Low-Altitude Optical Remote Sensing

PubMed Central

Visser, Fleur; Buis, Kerst; Verschoren, Veerle; Meire, Patrick

2015-01-01

UAVs and other low-altitude remote sensing platforms are proving very useful tools for remote sensing of river systems. Currently consumer grade cameras are still the most commonly used sensors for this purpose. In particular, progress is being made to obtain river bathymetry from the optical image data collected with such cameras, using the strong attenuation of light in water. No studies have yet applied this method to map submergence depth of aquatic vegetation, which has rather different reflectance characteristics from river bed substrate. This study therefore looked at the possibilities to use the optical image data to map submerged aquatic vegetation (SAV) depth in shallow clear water streams. We first applied the Optimal Band Ratio Analysis method (OBRA) of Legleiter et al. (2009) to a dataset of spectral signatures from three macrophyte species in a clear water stream. The results showed that for each species the ratio of certain wavelengths were strongly associated with depth. A combined assessment of all species resulted in equally strong associations, indicating that the effect of spectral variation in vegetation is subsidiary to spectral variation due to depth changes. Strongest associations (R2-values ranging from 0.67 to 0.90 for different species) were found for combinations including one band in the near infrared (NIR) region between 825 and 925 nm and one band in the visible light region. Currently data of both high spatial and spectral resolution is not commonly available to apply the OBRA results directly to image data for SAV depth mapping. Instead a novel, low-cost data acquisition method was used to obtain six-band high spatial resolution image composites using a NIR sensitive DSLR camera. A field dataset of SAV submergence depths was used to develop regression models for the mapping of submergence depth from image pixel values. Band (combinations) providing the best performing models (R2-values up to 0.77) corresponded with the OBRA findings. A 10% error was achieved under sub-optimal data collection conditions, which indicates that the method could be suitable for many SAV mapping applications. PMID:26437410

Depth Estimation of Submerged Aquatic Vegetation in Clear Water Streams Using Low-Altitude Optical Remote Sensing.

PubMed

Visser, Fleur; Buis, Kerst; Verschoren, Veerle; Meire, Patrick

2015-09-30

UAVs and other low-altitude remote sensing platforms are proving very useful tools for remote sensing of river systems. Currently consumer grade cameras are still the most commonly used sensors for this purpose. In particular, progress is being made to obtain river bathymetry from the optical image data collected with such cameras, using the strong attenuation of light in water. No studies have yet applied this method to map submergence depth of aquatic vegetation, which has rather different reflectance characteristics from river bed substrate. This study therefore looked at the possibilities to use the optical image data to map submerged aquatic vegetation (SAV) depth in shallow clear water streams. We first applied the Optimal Band Ratio Analysis method (OBRA) of Legleiter et al. (2009) to a dataset of spectral signatures from three macrophyte species in a clear water stream. The results showed that for each species the ratio of certain wavelengths were strongly associated with depth. A combined assessment of all species resulted in equally strong associations, indicating that the effect of spectral variation in vegetation is subsidiary to spectral variation due to depth changes. Strongest associations (R²-values ranging from 0.67 to 0.90 for different species) were found for combinations including one band in the near infrared (NIR) region between 825 and 925 nm and one band in the visible light region. Currently data of both high spatial and spectral resolution is not commonly available to apply the OBRA results directly to image data for SAV depth mapping. Instead a novel, low-cost data acquisition method was used to obtain six-band high spatial resolution image composites using a NIR sensitive DSLR camera. A field dataset of SAV submergence depths was used to develop regression models for the mapping of submergence depth from image pixel values. Band (combinations) providing the best performing models (R²-values up to 0.77) corresponded with the OBRA findings. A 10% error was achieved under sub-optimal data collection conditions, which indicates that the method could be suitable for many SAV mapping applications.

Bed topography of Jakobshavn Isbræ, Greenland from high-resolution gravity data

NASA Astrophysics Data System (ADS)

An, L.; Rignot, E. J.; Morlighem, M.; Paden, J. D.; Holland, D. M.

2015-12-01

Jakobshavn Isbræ (JKS) is one of the largest marine terminating outlet glaciers in Greenland, feeding a fjord about 800 m deep in the west coast. JKS sped up more than twofold since 2002 and contributed nearly 1 mm of global sea level rise during the period from 2000 to 2011. Holland et al. (2008) posit that these changes coincided with a change in ocean conditions beneath the former ice tongue, yet little is known about the depth of the glacier at its grounding line and upstream of the grounding line and the sea floor depth of the fjord is not well known either. Here, we present a new approach to infer the glacier bed topography, ice thickness and sea floor bathymetry near the grounding line of JKS using high-resolution airborne gravity data from AirGRAV. AirGRAV data were collected in August 2012 from a helicopter platform. The data combined with radio echo sounding data, discrete point soundings in the fjord and the mass conservation approach on land ice. AirGRAV acquired a 500m spacing grid of free-air gravity data at 50 knots with sub-milligal accuracy, i.e. much higher than NASA Operation IceBridge (OIB)'s 5.2km resolution at 290 knots. We use a 3D inversion of the gravity data combining our observations and a forward modeling of the surrounding gravity field, and constrained at the boundary by radar echo soundings and point bathymetry. We reconstruct seamless bed topography at the grounding line that matches interior data and the sea floor bathymetry. The results reveal the true depth at the elbow of the terminal valley and the bed reversal in the proximity of the current grounding line. The analysis provides guidelines for future gravity survey of narrow fjords in terms of spatial resolution and gravity precision. The results also demonstrate the practicality of using high resolution gravity survey to resolve bed topography near glacier snouts, in places where radar sounding has been significantly challenged in the past. The inversion results are critical to re-interpret the recent evolution of JKS and reduce uncertainties in projecting its future contribution to sea level. This work was conducted at UCI and at Caltech's Jet Propulsion Laboratory under a contract with the Gordon and Betty More Foundation and with NASA's Cryospheric Science Program.

AUV Mapping and ROV Exploration of Los Frailes Submarine Canyon, Cabo Pulmo National Marine Park, Baja California Sur, Mexico

NASA Astrophysics Data System (ADS)

Troni, G.; Caress, D. W.; Graves, D.; Thomas, H. J.; Thompson, D.; Barry, J. P.; Aburto-Oropeza, O.; Johnson, A. F.; Lundsten, L.

2015-12-01

Los Frailes submarine canyon is located at the south boundary of the Cabo Pulmo National Marine Park on the southeast tip of the Baja California Peninsula. During the Monterey Bay Aquarium Research Institute (MBARI) 2015 Gulf of California expedition we used an autonomous underwater vehicle (AUV) to map this canyon from 50 m to 450 m depths, and then explored the canyon with a small remotely operated vehicle (ROV). This three day R/V Rachel Carson cruise was a collaboration with the Center for Marine Biodiversity and Conservation at Scripps Institution of Oceanography and the Centro para la Biodiversidad Marina y la Conservación in La Paz. The MBARI AUV D. Allan B. collected high resolution bathymetry, sidescan, and subbottom profiles of Los Frailes submarine canyon and part of the north Cabo Pulmo deep reef. In order to safely generate a 1-m lateral resolution multibeam bathymetry map in the nearshore high relief terrain, the mapping operations consisted of an initial short survey following the 100-m isobath followed by a series of short, incremental AUV missions located on the deep edge of the new AUV bathymetry. The MBARI Mini-ROV was used to explore the submarine canyon within the detailed map created by the MBARI AUV. The Mini-ROV is a 1.2-m-long, 350 kg, 1,500-m-depth-rated ROV designed and constructed by MBARI. It is controlled by six 600-watt thrusters and is equipped with a high-definition video camera and navigation sensors. This small ROV carries less accurate, lower cost navigation sensors than larger vehicles. We implemented new algorithms to localize combining Doppler velocity log sensor data and low-cost MEMS-based inertial sensor data with sporadic ultra-short baseline position measurements to provide a high accuracy position estimation. The navigation performance allowed us to colocate the ROV video imagery with the 1-m resolution bathymetric map of the submarine canyon. Upper Los Frailes Canyon is rugged and, aside from small sand pockets along the thalweg, largely bare of sediment. ROV video indicates the north wall is composed of granitic rock similar to outcrops on shore. Few fish or other animals are observed below 100 m depth, but considerable diversity exists along the canyon walls above 100 m depth. These observations are consistent with a pronounced oxygen minimum zone present below about 100 m depth.

Improvement of depth resolution on photoacoustic imaging using multiphoton absorption

NASA Astrophysics Data System (ADS)

Yamaoka, Yoshihisa; Fujiwara, Katsuji; Takamatsu, Tetsuro

2007-07-01

Commercial imaging systems, such as computed tomography and magnetic resonance imaging, are frequently used powerful tools for observing structures deep within the human body. However, they cannot precisely visualized several-tens micrometer-sized structures for lack of spatial resolution. In this presentation, we propose photoacoustic imaging using multiphoton absorption technique to generate ultrasonic waves as a means of improving depth resolution. Since the multiphoton absorption occurs at only the focus point and the employed infrared pulses deeply penetrate living tissues, it enables us to extract characteristic features of structures embedded in the living tissue. When nanosecond pulses from a 1064-nm Nd:YAG laser were focused on Rhodamine B/chloroform solution (absorption peak: 540 nm), the peak intensity of the generated photoacoustic signal was proportional to the square of the input pulse energy. This result shows that the photoacoustic signals can be induced by the two-photon absorption of infrared nanosecond pulse laser and also can be detected by a commercial low-frequency MHz transducer. Furthermore, in order to evaluate the depth resolution of multiphoton-photoacoustic imaging, we investigated the dependence of photoacoustic signal on depth position using a 1-mm-thick phantom in a water bath. We found that the depth resolution of two-photon photoacoustic imaging (1064 nm) is greater than that of one-photon photoacoustic imaging (532 nm). We conclude that evolving multiphoton-photoacoustic imaging technology renders feasible the investigation of biomedical phenomena at the deep layer in living tissue.

A New Hybrid Spatio-temporal Model for Estimating Daily Multi-year PM2.5 Concentrations Across Northeastern USA Using High Resolution Aerosol Optical Depth Data

NASA Technical Reports Server (NTRS)

Kloog, Itai; Chudnovsky, Alexandra A.; Just, Allan C.; Nordio, Francesco; Koutrakis, Petros; Coull, Brent A.; Lyapustin, Alexei; Wang, Yujie; Schwartz, Joel

2014-01-01

The use of satellite-based aerosol optical depth (AOD) to estimate fine particulate matter PM(sub 2.5) for epidemiology studies has increased substantially over the past few years. These recent studies often report moderate predictive power, which can generate downward bias in effect estimates. In addition, AOD measurements have only moderate spatial resolution, and have substantial missing data. We make use of recent advances in MODIS satellite data processing algorithms (Multi-Angle Implementation of Atmospheric Correction (MAIAC), which allow us to use 1 km (versus currently available 10 km) resolution AOD data.We developed and cross validated models to predict daily PM(sub 2.5) at a 1X 1 km resolution across the northeastern USA (New England, New York and New Jersey) for the years 2003-2011, allowing us to better differentiate daily and long term exposure between urban, suburban, and rural areas. Additionally, we developed an approach that allows us to generate daily high-resolution 200 m localized predictions representing deviations from the area 1 X 1 km grid predictions. We used mixed models regressing PM(sub 2.5) measurements against day-specific random intercepts, and fixed and random AOD and temperature slopes. We then use generalized additive mixed models with spatial smoothing to generate grid cell predictions when AOD was missing. Finally, to get 200 m localized predictions, we regressed the residuals from the final model for each monitor against the local spatial and temporal variables at each monitoring site. Our model performance was excellent (mean out-of-sample R(sup 2) = 0.88). The spatial and temporal components of the out-of-sample results also presented very good fits to the withheld data (R(sup 2) = 0.87, R(sup)2 = 0.87). In addition, our results revealed very little bias in the predicted concentrations (Slope of predictions versus withheld observations = 0.99). Our daily model results show high predictive accuracy at high spatial resolutions and will be useful in reconstructing exposure histories for epidemiological studies across this region.

A New Hybrid Spatio-Temporal Model For Estimating Daily Multi-Year PM2.5 Concentrations Across Northeastern USA Using High Resolution Aerosol Optical Depth Data.

PubMed

Kloog, Itai; Chudnovsky, Alexandra A; Just, Allan C; Nordio, Francesco; Koutrakis, Petros; Coull, Brent A; Lyapustin, Alexei; Wang, Yujie; Schwartz, Joel

2014-10-01

The use of satellite-based aerosol optical depth (AOD) to estimate fine particulate matter (PM 2.5 ) for epidemiology studies has increased substantially over the past few years. These recent studies often report moderate predictive power, which can generate downward bias in effect estimates. In addition, AOD measurements have only moderate spatial resolution, and have substantial missing data. We make use of recent advances in MODIS satellite data processing algorithms (Multi-Angle Implementation of Atmospheric Correction (MAIAC), which allow us to use 1 km (versus currently available 10 km) resolution AOD data. We developed and cross validated models to predict daily PM 2.5 at a 1×1km resolution across the northeastern USA (New England, New York and New Jersey) for the years 2003-2011, allowing us to better differentiate daily and long term exposure between urban, suburban, and rural areas. Additionally, we developed an approach that allows us to generate daily high-resolution 200 m localized predictions representing deviations from the area 1×1 km grid predictions. We used mixed models regressing PM 2.5 measurements against day-specific random intercepts, and fixed and random AOD and temperature slopes. We then use generalized additive mixed models with spatial smoothing to generate grid cell predictions when AOD was missing. Finally, to get 200 m localized predictions, we regressed the residuals from the final model for each monitor against the local spatial and temporal variables at each monitoring site. Our model performance was excellent (mean out-of-sample R 2 =0.88). The spatial and temporal components of the out-of-sample results also presented very good fits to the withheld data (R 2 =0.87, R 2 =0.87). In addition, our results revealed very little bias in the predicted concentrations (Slope of predictions versus withheld observations = 0.99). Our daily model results show high predictive accuracy at high spatial resolutions and will be useful in reconstructing exposure histories for epidemiological studies across this region.

A New Hybrid Spatio-Temporal Model For Estimating Daily Multi-Year PM2.5 Concentrations Across Northeastern USA Using High Resolution Aerosol Optical Depth Data

PubMed Central

Kloog, Itai; Chudnovsky, Alexandra A.; Just, Allan C.; Nordio, Francesco; Koutrakis, Petros; Coull, Brent A.; Lyapustin, Alexei; Wang, Yujie; Schwartz, Joel

2017-01-01

Background The use of satellite-based aerosol optical depth (AOD) to estimate fine particulate matter (PM2.5) for epidemiology studies has increased substantially over the past few years. These recent studies often report moderate predictive power, which can generate downward bias in effect estimates. In addition, AOD measurements have only moderate spatial resolution, and have substantial missing data. Methods We make use of recent advances in MODIS satellite data processing algorithms (Multi-Angle Implementation of Atmospheric Correction (MAIAC), which allow us to use 1 km (versus currently available 10 km) resolution AOD data. We developed and cross validated models to predict daily PM2.5 at a 1×1km resolution across the northeastern USA (New England, New York and New Jersey) for the years 2003–2011, allowing us to better differentiate daily and long term exposure between urban, suburban, and rural areas. Additionally, we developed an approach that allows us to generate daily high-resolution 200 m localized predictions representing deviations from the area 1×1 km grid predictions. We used mixed models regressing PM2.5 measurements against day-specific random intercepts, and fixed and random AOD and temperature slopes. We then use generalized additive mixed models with spatial smoothing to generate grid cell predictions when AOD was missing. Finally, to get 200 m localized predictions, we regressed the residuals from the final model for each monitor against the local spatial and temporal variables at each monitoring site. Results Our model performance was excellent (mean out-of-sample R2=0.88). The spatial and temporal components of the out-of-sample results also presented very good fits to the withheld data (R2=0.87, R2=0.87). In addition, our results revealed very little bias in the predicted concentrations (Slope of predictions versus withheld observations = 0.99). Conclusion Our daily model results show high predictive accuracy at high spatial resolutions and will be useful in reconstructing exposure histories for epidemiological studies across this region. PMID:28966552

Submesoscale currents in the northern Gulf of Mexico: Deep phenomena and dispersion over the continental slope

NASA Astrophysics Data System (ADS)

Bracco, Annalisa; Choi, Jun; Joshi, Keshav; Luo, Hao; McWilliams, James C.

2016-05-01

This study examines the mesoscale and submesoscale circulations along the continental slope in the northern Gulf of Mexico at depths greater than 1000 m. The investigation is performed using a regional model run at two horizontal grid resolutions, 5 km and 1.6 km, over a 3 year period, from January 2010 to December 2012. Ageostrophic submesoscale eddies and vorticity filaments populate the continental slope, and they are stronger and more abundant in the simulation at higher resolution, as to be expected. They are formed from horizontal shear layers at the edges of highly intermittent, bottom-intensified, along-slope boundary currents and in the cores of those currents where they are confined to steep slopes. Two different flow regimes are identified. The first applies to the De Soto Canyon that is characterized by weak mean currents and, in the high-resolution run, by intense but few submesoscale eddies that form near preferentially along the Florida continental slope. The second is found in the remainder of the domain, where the mean currents are stronger and the circulation is highly variable in both space and time, and the vorticity field is populated, in the high-resolution case, by numerous vorticity filaments and short-lived eddies. Lagrangian tracers are deployed at different times along the continental shelf below 1000 m depth to quantify the impact of the submesoscale currents on transport and mixing. The modeled absolute dispersion is, on average, independent of horizontal resolution, while mixing, quantified by finite-size Lyapunov exponents and vertical relative dispersion, increases when submesoscale processes are present. Dispersion in the De Soto Canyon is smaller than in the rest of the model domain and less affected by resolution. This is further confirmed comparing the evolution of passive dye fields deployed in De Soto Canyon near the Macondo Prospect, where the Deepwater Horizon rig exploded in 2010, and at the largest known natural hydrocarbon seep in the northern Gulf, known as GC600, located a few hundred kilometers to the west of the rig wellhead.

Slab and Plume Morphology in the Transition Zone and Below: a Comparison of Images From Recent P and S Velocity Models

NASA Astrophysics Data System (ADS)

Salmi, L. M.; French, S. W.; Romanowicz, B. A.

2014-12-01

Resolving subduction zones in the shallow upper mantle using global shear velocity tomography has long been a challenge, likely due to the rather narrow signature of the slabs down to ~400 km depth compared to the wavelength of fundamental mode and overtone surface waves, on which resolution of Vs at these depths often relies. On the other hand, models based on P wave travel times exhibit higher resolution in subduction zone regions, owing to both the higher frequencies of the P waves as well as an optimal illumination geometry. Conversely, the global Vs models typically have better resolution near the CMB, because of constraints provided by Sdiff and multiple ScS phases. Here we compare the morphology of subducted slabs throughout the mantle, as imaged by both a recent Vp model (GAP_P4, Fukao and Obayashi, 2013) and a new Vs model (SEMUCB-WM1, French and Romanowicz, GJI, in revision). The latter model was developed by inverting body (to 32s) and fundamental and overtone surface (to 60s) waveforms, with the forward seismic wavefield computed using the spectral element method. While the S velocity model is still "fuzzier" than the Vp model, it tracks the behavior of slabs trapped in the transition zone, and those ponding around 1000 km depth. We quantify the high correlation of the region of fast Vp and Vs anomalies, and thus derive a robust estimate of the R=dlnVs/dlnVp ratio as a function of depth in regions of faster than average velocity. We compare these results with estimates obtained with other combinations of available P and S models, as well as theoretical values from mineral physical calculations. Estimating R in slow velocity regions is more difficult, as resolution varies more among models. Here we compare slow velocity images in SEMUCB-WM1 with those of other recent Vs and Vp models and attempt to estimate R in those regions as well. Interestingly, we note that, in the SEMUCB-WM1 model, some of the columnar, lower than average velocity regions "rising" from the CMB through the lower mantle appear to be deflected horizontally at ~1000 km depth. This observation suggests that whatever mechanism causes the resistance to downward flow in subduction zones at this depth may also affect upwellings.

Quantitative evaluation of sputtering induced surface roughness and its influence on AES depth profiles of polycrystalline Ni/Cu multilayer thin films

NASA Astrophysics Data System (ADS)

Yan, X. L.; Coetsee, E.; Wang, J. Y.; Swart, H. C.; Terblans, J. J.

2017-07-01

The polycrystalline Ni/Cu multilayer thin films consisting of 8 alternating layers of Ni and Cu were deposited on a SiO2 substrate by means of electron beam evaporation in a high vacuum. Concentration-depth profiles of the as-deposited multilayered Ni/Cu thin films were determined with Auger electron spectroscopy (AES) in combination with Ar+ ion sputtering, under various bombardment conditions with the samples been stationary as well as rotating in some cases. The Mixing-Roughness-Information depth (MRI) model used for the fittings of the concentration-depth profiles accounts for the interface broadening of the experimental depth profiling. The interface broadening incorporates the effects of atomic mixing, surface roughness and information depth of the Auger electrons. The roughness values extracted from the MRI model fitting of the depth profiling data agrees well with those measured by atomic force microscopy (AFM). The ion sputtering induced surface roughness during the depth profiling was accordingly quantitatively evaluated from the fitted MRI parameters with sample rotation and stationary conditions. The depth resolutions of the AES depth profiles were derived directly from the values determined by the fitting parameters in the MRI model.

Fast range estimation based on active range-gated imaging for coastal surveillance

NASA Astrophysics Data System (ADS)

Kong, Qingshan; Cao, Yinan; Wang, Xinwei; Tong, Youwan; Zhou, Yan; Liu, Yuliang

2012-11-01

Coastal surveillance is very important because it is useful for search and rescue, illegal immigration, or harbor security and so on. Furthermore, range estimation is critical for precisely detecting the target. Range-gated laser imaging sensor is suitable for high accuracy range especially in night and no moonlight. Generally, before detecting the target, it is necessary to change delay time till the target is captured. There are two operating mode for range-gated imaging sensor, one is passive imaging mode, and the other is gate viewing mode. Firstly, the sensor is passive mode, only capturing scenes by ICCD, once the object appears in the range of monitoring area, we can obtain the course range of the target according to the imaging geometry/projecting transform. Then, the sensor is gate viewing mode, applying micro second laser pulses and sensor gate width, we can get the range of targets by at least two continuous images with trapezoid-shaped range intensity profile. This technique enables super-resolution depth mapping with a reduction of imaging data processing. Based on the first step, we can calculate the rough value and quickly fix delay time which the target is detected. This technique has overcome the depth resolution limitation for 3D active imaging and enables super-resolution depth mapping with a reduction of imaging data processing. By the two steps, we can quickly obtain the distance between the object and sensor.

Two-Dimensional Standing Wave Total Internal Reflection Fluorescence Microscopy: Superresolution Imaging of Single Molecular and Biological Specimens

PubMed Central

Chung, Euiheon; Kim, Daekeun; Cui, Yan; Kim, Yang-Hyo; So, Peter T. C.

2007-01-01

The development of high resolution, high speed imaging techniques allows the study of dynamical processes in biological systems. Lateral resolution improvement of up to a factor of 2 has been achieved using structured illumination. In a total internal reflection fluorescence microscope, an evanescence excitation field is formed as light is total internally reflected at an interface between a high and a low index medium. The <100 nm penetration depth of evanescence field ensures a thin excitation region resulting in low background fluorescence. We present even higher resolution wide-field biological imaging by use of standing wave total internal reflection fluorescence (SW-TIRF). Evanescent standing wave (SW) illumination is used to generate a sinusoidal high spatial frequency fringe pattern on specimen for lateral resolution enhancement. To prevent thermal drift of the SW, novel detection and estimation of the SW phase with real-time feedback control is devised for the stabilization and control of the fringe phase. SW-TIRF is a wide-field superresolution technique with resolution better than a fifth of emission wavelength or ∼100 nm lateral resolution. We demonstrate the performance of the SW-TIRF microscopy using one- and two-directional SW illumination with a biological sample of cellular actin cytoskeleton of mouse fibroblast cells as well as single semiconductor nanocrystal molecules. The results confirm the superior resolution of SW-TIRF in addition to the merit of a high signal/background ratio from TIRF microscopy. PMID:17483188

Sounding of Groundwater Through Conductive Media in Mars Analog Environments Using Transient Electromagnetics and Low Frequency GPR.

NASA Astrophysics Data System (ADS)

Jernsletten, J. A.; Heggy, E.

2004-05-01

INTRODUCTION: This study compares the use of (diffusive) Transient Electromagnetics (TEM) for sounding of subsurface water in conductive Mars analog environments to the use of (propagative) Ground-Penetrating Radar (GPR) for the same purpose. We show data from three field studies: 1) Radar sounding data (GPR) from the Nubian aquifer, Bahria Oasis, Egypt; 2) Diffusive sounding data (TEM) from Pima County, Arizona; and 3) Shallower sounding data using the Fast-Turnoff TEM method from Peña de Hierro in the Rio Tinto area, Spain. The latter is data from work conducted under the auspices of the Mars Analog Research and Technology Experiment (MARTE). POTENTIAL OF TEM: A TEM survey was carried out in Pima County, Arizona, in January 2003. Data was collected using 100 m Tx loops, a ferrite-cored magnetic coil Rx antenna, and a sounding frequency of 16 Hz. The dataset has ~500 m depth of investigation, shows a ~120 m depth to the water table (confirmed by several USGS test wells in the area), and a conductive (~20-40 Ω m) clay-rich soil above the water table. The Rio Tinto Fast-Turnoff TEM data was collected using 40 m Tx loops, 10 m Rx loops, and a 32 Hz sounding frequency. Note ~200 m depth of investigation and a conductive high at ~80 m depth (interpreted as water table). Data was also collected using 20 m Tx loops (10 m Rx loops) in other parts of the area. Note ~50 m depth of investigation and a conductive high at ~15 m depth (interpreted as subsurface water flow under mine tailings matching surface flows seen coming out from under the tailings, and shown on maps). Both of these interpretations were roughly confirmed by preliminary results from the MARTE ground truth drilling campaign carried out in September and October 2003. POTENTIAL OF GPR: A GPR experiment was carried out in February 2003 in the Bahria Oasis in the western Egyptian desert, using a 2 MHz monostatic GPR, mapping the Nubian Aquifer at depths of 100-900 m, beneath a thick layer of homogenous marine sedimentary quaternary and tertiary structures constituted mainly of highly resistive dry porous dolomite, illinite, limestone and sandstone, given a reasonable knowledge of the local geoelectrical properties of the crust. The GPR was able to map the first interface between the dolomitic limestone and the gravel, while the detection of the deep subsurface water table remains uncertain due to the uncertainties arising from some instrumentational and geoelectrical problems. In locations were the water table was at shallower depths (less then 200 m), but with the presence of very thin layers (less than 0.5 m) of reddish dry clays, the technique failed to probe the moist interface and to map any significant stratigraphy. CONCLUSIONS: GPR excels in resolution, productivity (logistical efficiency) and is well suited for the shallower applications, but is more sensitive to highly conductive layers (result of wave propagation and higher frequencies), and achieves considerably smaller depths of investigation than TEM. The (diffusive) TEM method uses roughly two orders of magnitude lower sounding frequencies than GPR, is less sensitive to highly conductive layers, achieves considerably deeper depths of investigation, and is more suitable for sounding very deep subsurface water. Compared with GPR, TEM suffers for very shallow applications in terms of resolution and logistical efficiency. Fast-Turnoff TEM, with its very early measured time windows, achieves higher resolution than conventional TEM in shallow applications, and somewhat bridges the gap between GPR and TEM in terms of depths of investigation and suitable applications.

Extended depth of focus tethered capsule OCT endomicroscopy for upper gastrointestinal tract imaging (Conference Presentation)

NASA Astrophysics Data System (ADS)

Vuong, Barry; Yin, Biwei; Beaulieu-Ouellet, Emilie; Liang, Chia Pin; Beatty, Matthew; Singh, Kanwarpal; Dong, Jing; Grant, Catriona N.; Rosenberg, Mireille; Tearney, Guillermo J.

2017-02-01

Endoscopy, the current standard of care for the diagnosis of upper gastrointestinal (GI) diseases, is not ideal as a screening tool because it is costly, necessitates a team of medically trained personnel, and typically requires that the patient be sedated. Endoscopy is also a superficial macroscopic imaging modality and therefore is unable to provide detailed information on subsurface microscopic structure that is required to render a precise tissue diagnosis. We have overcome these limitations through the development of an optical coherence tomography tethered capsule endomicroscopy (OCT-TCE) imaging device. The OCT-TCE device has a pill-like form factor with an optically clear wall to allow the contained opto-mechanical components to scan the OCT beam along the circumference of the esophagus. Once swallowed, the OCT-TCE device traverses the esophagus naturally via peristalsis and multiple cross-sectional OCT images are obtained at 30-40 μm lateral resolution by 7 μm axial resolution. While this spatial resolution enables differentiation of squamous vs columnar mucosa, crucial microstructural features such as goblet cells ( 10 μm), which signify intestinal metaplasia in BE, and enlarged nuclei that are indicative of dysplasia cannot be resolved with the current OCT-TCE technology. In this work we demonstrate a novel design of a high lateral resolution OCT-TCE device with an extended depth of focus (EDOF). The EDOF is created by use of self-imaging wavefront division multiplexing that produces multiple focused modes at different depths into the sample. The overall size of the EDOF TCE is similar to that of the previous OCT-TCE device ( 11 mm by 26 mm) but with a lateral resolution of 8 μm over a depth range of 2 mm. Preliminary esophageal and intestinal imaging using these EDOF optics demonstrates an improvement in the ability to resolve tissue morphology including individual glands and cells. These results suggest that the use of EDOF optics may be a promising avenue for increasing the accuracy of OCT-TCE for the diagnosis of upper GI diseases.

GlobalSoilMap France: High-resolution spatial modelling the soils of France up to two meter depth.

PubMed

Mulder, V L; Lacoste, M; Richer-de-Forges, A C; Arrouays, D

2016-12-15

This work presents the first GlobalSoilMap (GSM) products for France. We developed an automatic procedure for mapping the primary soil properties (clay, silt, sand, coarse elements, pH, soil organic carbon (SOC), cation exchange capacity (CEC) and soil depth). The procedure employed a data-mining technique and a straightforward method for estimating the 90% confidence intervals (CIs). The most accurate models were obtained for pH, sand and silt. Next, CEC, clay and SOC were found reasonably accurate predicted. Coarse elements and soil depth were the least accurate of all models. Overall, all models were considered robust; important indicators for this were 1) the small difference in model diagnostics between the calibration and cross-validation set, 2) the unbiased mean predictions, 3) the smaller spatial structure of the prediction residuals in comparison to the observations and 4) the similar performance compared to other developed GlobalSoilMap products. Nevertheless, the confidence intervals (CIs) were rather wide for all soil properties. The median predictions became less reliable with increasing depth, as indicated by the increase of CIs with depth. In addition, model accuracy and the corresponding CIs varied depending on the soil variable of interest, soil depth and geographic location. These findings indicated that the CIs are as informative as the model diagnostics. In conclusion, the presented method resulted in reasonably accurate predictions for the majority of the soil properties. End users can employ the products for different purposes, as was demonstrated with some practical examples. The mapping routine is flexible for cloud-computing and provides ample opportunity to be further developed when desired by its users. This allows regional and international GSM partners with fewer resources to develop their own products or, otherwise, to improve the current routine and work together towards a robust high-resolution digital soil map of the world. Copyright © 2016 Elsevier B.V. All rights reserved.

Clinical application of multiphoton tomography in combination with high-frequency ultrasound for evaluation of skin diseases.

PubMed

König, Karsten; Speicher, Marco; Köhler, Martin J; Scharenberg, Rüdiger; Kaatz, Martin

2010-12-01

The first-ever application of high-frequency ultrasound combined with multiphoton tomography (MPT) and dermoscopy in a clinical trial is reported. 47 patients with different dermatoses such as benign and malign skin cancers, connective tissue diseases, inflammatory skin diseases, and autoimmune bullous skin diseases have been investigated with (i) state-of-the-art and highly sophisticated ultrasound systems for dermatology, (ii) the femtosecond laser multiphoton tomograph and (iii) dermoscopes. Dermoscopy provides two-dimensional color images of the skin surface with a magnification up to 70 x. Depending on the ultrasonic frequencies from 7.5 MHz to 100 MHz, the signal depth varies from about 1 mm to 80 mm. Vertical ultrasound wide-field images provide fast information on depth and volume of the lesion. The 100 MHz ultrasound allows imaging with resolutions down to 16 μm (axial) and 32 μm (lateral). Multiphoton tomography provides 0.36 x 0.36 x 0.001 mm³ horizontal optical sections of a particular region of interest with submicron resolution down to 200 μm tissue depth. The autofluorescence of mitochondrial coenzymes, keratin, melanin, and elastin as well as the network of collagen structures can be imaged. The combination of ultrasound and MPT opens novel synergistic possibilities in diagnostics of skin diseases with a special focus on the early detection of skin cancer as well as the evaluation of treatments. Copyright © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Airborne Lidar Measurements of Aerosol Optical Properties During SAFARI-2000

NASA Technical Reports Server (NTRS)

McGill, M. J.; Hlavka, D. L.; Hart, W. D.; Welton, E. J.; Campbell, J. R.; Starr, David OC. (Technical Monitor)

2002-01-01

The Cloud Physics Lidar (CPL) operated onboard the NASA ER-2 high altitude aircraft during the SAFARI-2000 field campaign. The CPL provided high spatial resolution measurements of aerosol optical properties at both 1064 nm and 532 nm. We present here results of planetary boundary layer (PBL) aerosol optical depth analysis and profiles of aerosol extinction. Variation of optical depth and extinction are examined as a function of regional location. The wide-scale aerosol mapping obtained by the CPL is a unique data set that will aid in future studies of aerosol transport. Comparisons between the airborne CPL and ground-based MicroPulse Lidar Network (MPL-Net) sites are shown to have good agreement.

Nano-size defects in arsenic-implanted HgCdTe films: a HRTEM study

NASA Astrophysics Data System (ADS)

Bonchyk, O. Yu.; Savytskyy, H. V.; Swiatek, Z.; Morgiel, Y.; Izhnin, I. I.; Voitsekhovskii, A. V.; Korotaev, A. G.; Mynbaev, K. D.; Fitsych, O. I.; Varavin, V. S.; Dvoretsky, S. A.; Marin, D. V.; Yakushev, M. V.

2018-02-01

Radiation damage and its transformation under annealing were studied with bright-field and high-resolution transmission electron microscopy for arsenic-implanted HgCdTe films with graded-gap surface layers. In addition to typical highly defective layers in as-implanted material, a 50 nm-thick sub-surface layer with very low defect density was observed. The main defects in other layers after implantation were dislocation loops, yet after arsenic activation annealing, the dominating defects were single dislocations. Transport (from depth to surface), transformation and annihilation of radiation-induced defects were observed as a result of annealing, with the depth with the maximum defect density decreasing from 110 to 40 nm.

Super long viewing distance light homogeneous emitting three-dimensional display

NASA Astrophysics Data System (ADS)

Liao, Hongen

2015-04-01

Three-dimensional (3D) display technology has continuously been attracting public attention with the progress in today's 3D television and mature display technologies. The primary characteristics of conventional glasses-free autostereoscopic displays, such as spatial resolution, image depths, and viewing angle, are often limited due to the use of optical lenses or optical gratings. We present a 3D display using MEMS-scanning-mechanism-based light homogeneous emitting (LHE) approach and demonstrate that the display can directly generate an autostereoscopic 3D image without the need for optical lenses or gratings. The generated 3D image has the advantages of non-aberration and a high-definition spatial resolution, making it the first to exhibit animated 3D images with image depth of six meters. Our LHE 3D display approach can be used to generate a natural flat-panel 3D display with super long viewing distance and alternative real-time image update.

A High-Resolution Model of the Beaufort Sea Circulation

NASA Astrophysics Data System (ADS)

Hedstrom, K.; Danielson, S. L.; Curchitser, E. N.; Lemieux, J. F.; Kasper, J.

2016-02-01

Configuration of and results from a coupled sea-ice ocean model of the Beaufort Sea shelf at 900 m resolution will be shown. Challenging features of the domain include large fresh water flux from the MacKenzie River, seasonal land-fast ice, and ice-covered open boundary conditions. A pan-Arctic domain provides boundary fields for both the ocean and sea-ice models (Regional Ocean Modeling System - myroms.org). Both models are forced with river inputs from the ARDAT climatology (Whitefield et al., 2015), which includes heat content as well as flow rate. Coastal discharges are prescribed as lateral inflows distributed over the depth of the ocean-land interface. New in the Beaufort domain is the use of a landfast ice parameterization (Lemieux, 2015), which adds a large bottom stress to the ice when the estimated keel depth approaches that of the ocean.

Axial resolution improvement in spectral domain optical coherence tomography using a depth-adaptive maximum-a-posterior framework

NASA Astrophysics Data System (ADS)

Boroomand, Ameneh; Tan, Bingyao; Wong, Alexander; Bizheva, Kostadinka

2015-03-01

The axial resolution of Spectral Domain Optical Coherence Tomography (SD-OCT) images degrades with scanning depth due to the limited number of pixels and the pixel size of the camera, any aberrations in the spectrometer optics and wavelength dependent scattering and absorption in the imaged object [1]. Here we propose a novel algorithm which compensates for the blurring effect of these factors of the depth-dependent axial Point Spread Function (PSF) in SDOCT images. The proposed method is based on a Maximum A Posteriori (MAP) reconstruction framework which takes advantage of a Stochastic Fully Connected Conditional Random Field (SFCRF) model. The aim is to compensate for the depth-dependent axial blur in SD-OCT images and simultaneously suppress the speckle noise which is inherent to all OCT images. Applying the proposed depth-dependent axial resolution enhancement technique to an OCT image of cucumber considerably improved the axial resolution of the image especially at higher imaging depths and allowed for better visualization of cellular membrane and nuclei. Comparing the result of our proposed method with the conventional Lucy-Richardson deconvolution algorithm clearly demonstrates the efficiency of our proposed technique in better visualization and preservation of fine details and structures in the imaged sample, as well as better speckle noise suppression. This illustrates the potential usefulness of our proposed technique as a suitable replacement for the hardware approaches which are often very costly and complicated.

Super-nonlinear fluorescence microscopy for high-contrast deep tissue imaging

NASA Astrophysics Data System (ADS)

Wei, Lu; Zhu, Xinxin; Chen, Zhixing; Min, Wei

2014-02-01

Two-photon excited fluorescence microscopy (TPFM) offers the highest penetration depth with subcellular resolution in light microscopy, due to its unique advantage of nonlinear excitation. However, a fundamental imaging-depth limit, accompanied by a vanishing signal-to-background contrast, still exists for TPFM when imaging deep into scattering samples. Formally, the focusing depth, at which the in-focus signal and the out-of-focus background are equal to each other, is defined as the fundamental imaging-depth limit. To go beyond this imaging-depth limit of TPFM, we report a new class of super-nonlinear fluorescence microscopy for high-contrast deep tissue imaging, including multiphoton activation and imaging (MPAI) harnessing novel photo-activatable fluorophores, stimulated emission reduced fluorescence (SERF) microscopy by adding a weak laser beam for stimulated emission, and two-photon induced focal saturation imaging with preferential depletion of ground-state fluorophores at focus. The resulting image contrasts all exhibit a higher-order (third- or fourth- order) nonlinear signal dependence on laser intensity than that in the standard TPFM. Both the physical principles and the imaging demonstrations will be provided for each super-nonlinear microscopy. In all these techniques, the created super-nonlinearity significantly enhances the imaging contrast and concurrently extends the imaging depth-limit of TPFM. Conceptually different from conventional multiphoton processes mediated by virtual states, our strategy constitutes a new class of fluorescence microscopy where high-order nonlinearity is mediated by real population transfer.

Analysis of airborne imaging spectrometer data for the Ruby Mountains, Montana, by use of absorption-band-depth images

NASA Technical Reports Server (NTRS)

Brickey, David W.; Crowley, James K.; Rowan, Lawrence C.

1987-01-01

Airborne Imaging Spectrometer-1 (AIS-1) data were obtained for an area of amphibolite grade metamorphic rocks that have moderate rangeland vegetation cover. Although rock exposures are sparse and patchy at this site, soils are visible through the vegetation and typically comprise 20 to 30 percent of the surface area. Channel averaged low band depth images for diagnostic soil rock absorption bands. Sets of three such images were combined to produce color composite band depth images. This relative simple approach did not require extensive calibration efforts and was effective for discerning a number of spectrally distinctive rocks and soils, including soils having high talc concentrations. The results show that the high spectral and spatial resolution of AIS-1 and future sensors hold considerable promise for mapping mineral variations in soil, even in moderately vegetated areas.

Late Pleistocene and Holocene paleoclimate and alpine glacier fluctuations recorded by high-resolution grain-size data from an alpine lake sediment core, Wind River Range, Wyoming, USA

NASA Astrophysics Data System (ADS)

Thompson Davis, P.; Machalett, Björn; Gosse, John

2013-04-01

Varved lake sediments, which provide ideal high-resolution climate proxies, are not commonly available in many geographic areas over long time scales. This paper utilizes high-resolution grain-size analyses (n = 1040) from a 520-cm long sediment core from Lower Titcomb Lake (LTL), which lies just outside the type Titcomb Basin (TTB) moraines in the Wind River Range, Wyoming. The TTB moraines lie between Lower Titcomb Lake and Upper Titcomb Lake (UTL), about 3 km beyond, and 200 m lower than the modern glacier margin and Gannett Peak (Little Ice Age) moraines in the basin. Based on cosmogenic exposure dating, the TTB moraines are believed to be Younger Dryas (YD) age (Gosse et al., 1995) and lie in a geomorphic position similar to several other outer cirque moraines throughout the western American Cordillera. Until recently, many of these outer cirque moraines were believed to be Neoglacial age. The sediment core discussed here is one of five obtained from the two Titcomb Lakes, but is by the far the longest with the oldest sediment depositional record. Two AMS radiocarbon ages from the 445- and 455-cm core depths (about 2% loss on ignition, LOI) suggest that the lake basin may have been ice-free as early as 16.1 or even 16.8 cal 14C kyr, consistent with 10Be and 26Al exposure ages from boulders and bedrock surfaces outside the TTB moraines. The 257-cm depth in the core marks an abrupt transition from inorganic, sticky gray silt below (<1% LOI) to more organic, less sticky, light brown silt above (4-10% LOI). Eight AMS radiocarbon ages on bulk sediment and macrofossils date the transition to about 11.6 cal 14C kyr. Thus, sampling resolution above the transition is about 22.57 yr and below the transition is about 12.56 yr, consistent with a decreased sediment accumulation rate in LTL when Younger Dryas ice pulled back from the TTB moraines opening up UTL as a sediment depositional basin. The presented high-resolution grain size record reveals amplitudes and other structural features similar to delta 18O records from deep-lake ostracods in southern Germany, the Greenland ice core record, and speleothems in China. Major increases in the 2 - 8 µm grain size fraction indicative of increased glacier rock flour production between the 257 and 466 cm core depths appear to be roughly correlative with the YD-Alleröd-Bölling-Meiendorf-Heinrich 1 climate events recognized in other terrestrial records and Northern Atlantic Ocean marine cores, but provide much higher resolution than most of those records from a climate-sensitive alpine region in North America.

Ocean Color Products Supporting the Assessment of Good Environmental Status: Development of a Spatial Distribution Model for the Seagrass Posidonia Oceanica (L.) Delille, 1813

NASA Astrophysics Data System (ADS)

Zucchetta, M.; Taji, M. A.; Mangin, A.; Pastres, R.

2015-12-01

Posidonia oceanica (L.) Delile, 1813 is a seagrass species endemic to the Mediterranean Sea, which is considered as one of the key habitats of the coastal areas. This species forms large meadows sensitive to several anthropogenic pressures, that can be regarded as indicators of environment quality in coastal environments and its distributional patterns should be take into account when evaluating the Environmental Status following the Ecosystem approach promoted by the Mediterranean Action Plan of UNEP and the EU Marine Strategy Framework Directive (2008/56/EC). The aim of this study was to develop a Species Distribution Model for P. oceanica, to be applied to the whole Mediterranean North African coast, in order to obtain an estimation of the potential distribution of this species in the region to be considered as an indicator for the assessment of good Environmental Status. As the study area is a data-poor zone with regard to seagrass distribution (i.e. only for some areas detailed distribution maps are available), the Species Distribution Model (SDM) was calibrated using high resolution data from 5 Mediterranean sites, located in Italy and Spain and validated using available data from the North African coast. Usually, when developing SDMs species occupancy data is available at coarser resolution than the information of environmental variables, and thus has to be downscaled at the appropriate grain to be coupled to the environmental conditions. Tackling the case of P. oceanica we had to face the opposite problem: the quality (in terms of resolution) of the information on seagrass distribution is generally very high compared to the environmental data available over large scale in marine domains (e.g. global bathymetry data). The high resolution application and the model transfer (from calibration areas to North African coast) was possible taking advantage of Ocean Color products: the probability of presence of the species in a given area was modelled using a binomial generalized linear model as a function of the bathymetry and some water characteristics mainly obtained from satellite data. Full resolution (c.a. 300m) Medium Resolution Imaging Spectrometer (MERIS) sensor imagery have been processed in order to extract a set of environmental variables to be coupled to seagrass distribution in the areas used to calibrate the model and for the whole North Africa coast (i.e. model application area). For the period 2003-2011 we processed data of: 1) the diffuse attenuation coefficient 2) coloured dissolved organic matter 3) Particle backscatter at 443nm; 4) Euphotic depth, estimated considering the coefficient of extinction of light; 5) Euphotic depth/ depth ratio, combining the estimation of euphotic depth with the bathymetry. Other variables have been resampled at MERIS full resolution, like data obtained from Moderate Resolution Imaging Spectroradiometer (MODIS; Sea Surface Temperature and Photosynthetically Available Radiation) or by model simulation (e.g. water salinity). The fitted model suggests that water transparency plays a major role, but also other variables, such as salinity and photosynthetically available radiation at surface, are important at larger spatial scales in explaining meadows distribution. The availability of high resolution time-series of input data allowed us to apply the validated model to the whole NA coast. Using model predictions to identify areas with suitable conditions for P. oceanica, it was possible to develop an indicator of potential habitat use and to define baseline reference conditions, necessary for the assessment of Good Environmental Status in Mediterranean coastal waters. This work shows how the Ocean and Land Colour Instrument (OLCI) within the Sentinel-3 mission can be exploited - thanks to the way opened by MERIS - to carry out the operational monitoring needed for the implementation of the UNEP MAP and EU MSFD Ecosystem Approach to the integrated management of land, water and living resources.

High resolution subsurface imaging using resonance-enhanced detection in 2nd-harmonic KPFM.

PubMed

Cadena, Maria Jose; Reifenberger, Ronald G; Raman, Arvind

2018-06-28

Second harmonic Kelvin probe force microscopy is a robust mechanism for subsurface imaging at the nanoscale. Here we exploit resonance-enhanced detection as a way to boost the subsurface contrast with higher force sensitivity using lower bias voltages, in comparison to the traditional off-resonance case. In this mode, the second harmonic signal of the electrostatic force is acquired at one of the eigenmode frequencies of the microcantilever. As a result, high-resolution subsurface images are obtained in a variety of nanocomposites. To further understand the subsurface imaging detection upon electrostatic forces, we use a finite element model that approximates the geometry of the probe and sample. This allows the investigation of the contrast mechanism, the depth sensitivity and lateral resolution depending on tip-sample properties. © 2018 IOP Publishing Ltd.

Validation of MODIS 3 km land aerosol optical depth from NASA's EOS Terra and Aqua missions

NASA Astrophysics Data System (ADS)

Gupta, Pawan; Remer, Lorraine A.; Levy, Robert C.; Mattoo, Shana

2018-05-01

In addition to the standard resolution product (10 km), the MODerate resolution Imaging Spectroradiometer (MODIS) Collection 6 (C006) data release included a higher resolution (3 km). Other than accommodations for the two different resolutions, the 10 and 3 km Dark Target (DT) algorithms are basically the same. In this study, we perform global validation of the higher-resolution aerosol optical depth (AOD) over global land by comparing against AErosol RObotic NETwork (AERONET) measurements. The MODIS-AERONET collocated data sets consist of 161 410 high-confidence AOD pairs from 2000 to 2015 for Terra MODIS and 2003 to 2015 for Aqua MODIS. We find that 62.5 and 68.4 % of AODs retrieved from Terra MODIS and Aqua MODIS, respectively, fall within previously published expected error bounds of ±(0.05 + 0.2 × AOD), with a high correlation (R = 0.87). The scatter is not random, but exhibits a mean positive bias of ˜ 0.06 for Terra and ˜ 0.03 for Aqua. These biases for the 3 km product are approximately 0.03 larger than the biases found in similar validations of the 10 km product. The validation results for the 3 km product did not have a relationship to aerosol loading (i.e., true AOD), but did exhibit dependence on quality flags, region, viewing geometry, and aerosol spatial variability. Time series of global MODIS-AERONET differences show that validation is not static, but has changed over the course of both sensors' lifetimes, with Terra MODIS showing more change over time. The likely cause of the change of validation over time is sensor degradation, but changes in the distribution of AERONET stations and differences in the global aerosol system itself could be contributing to the temporal variability of validation.

High-resolution photography of clouds from the surface: Retrieval of optical depth of thin clouds down to centimeter scales: High-Resolution Photography of Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwartz, Stephen E.; Huang, Dong; Vladutescu, Daniela Viviana

This article describes the approach and presents initial results, for a period of several minutes in north central Oklahoma, of an examination of clouds by high resolution digital photography from the surface looking vertically upward. A commercially available camera having 35-mm equivalent focal length up to 1200 mm (nominal resolution as fine as 6 µrad, which corresponds to 9 mm for cloud height 1.5 km) is used to obtain a measure of zenith radiance of a 30 m × 30 m domain as a two-dimensional image consisting of 3456 × 3456 pixels (12 million pixels). Downwelling zenith radiance varies substantiallymore » within single images and between successive images obtained at 4-s intervals. Variation in zenith radiance found on scales down to about 10 cm is attributed to variation in cloud optical depth (COD). Attention here is directed primarily to optically thin clouds, COD less than about 2. A radiation transfer model used to relate downwelling zenith radiance to COD and to relate the counts in the camera image to zenith radiance, permits determination of COD on a pixel-by-pixel basis. COD for thin clouds determined in this way exhibits considerable variation, for example, an order of magnitude within 15 m, a factor of 2 within 4 m, and 25% (0.12 to 0.15) over 14 cm. In conclusion, this approach, which examines cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opens new avenues for examination of cloud structure and evolution.« less

Synchrotron X-ray microbeam dosimetry with a 20 micrometre resolution scintillator fibre-optic dosimeter.

PubMed

Archer, James; Li, Enbang; Petasecca, Marco; Stevenson, Andrew; Livingstone, Jayde; Dipuglia, Andrew; Davis, Jeremy; Rosenfeld, Anatoly; Lerch, Michael

2018-05-01

Cancer is one of the leading causes of death worldwide. External beam radiation therapy is one of the most important modalities for the treatment of cancers. Synchrotron microbeam radiation therapy (MRT) is a novel pre-clinical therapy that uses highly spatially fractionated X-ray beams to target tumours, allowing doses much higher than conventional radiotherapies to be delivered. A dosimeter with a high spatial resolution is required to provide the appropriate quality assurance for MRT. This work presents a plastic scintillator fibre optic dosimeter with a one-dimensional spatial resolution of 20 µm, an improvement on the dosimeter with a resolution of 50 µm that was demonstrated in previous work. The ability of this probe to resolve microbeams of width 50 µm has been demonstrated. The major limitations of this method were identified, most notably the low-light signal resulting from the small sensitive volume, which made valley dose measurements very challenging. A titanium-based reflective paint was used as a coating on the probe to improve the light collection, but a possible effect of the high-Z material on the probes water-equivalence has been identified. The effect of the reflective paint was a 28.5 ± 4.6% increase in the total light collected; it did not affect the shape of the depth-dose profile, nor did it explain an over-response observed when used to probe at low depths, when compared with an ionization chamber. With improvements to the data acquisition, this probe design has the potential to provide a water-equivalent, inexpensive dosimetry tool for MRT.

High-resolution photography of clouds from the surface: Retrieval of optical depth of thin clouds down to centimeter scales: High-Resolution Photography of Clouds

DOE PAGES

Schwartz, Stephen E.; Huang, Dong; Vladutescu, Daniela Viviana

2017-03-08

This article describes the approach and presents initial results, for a period of several minutes in north central Oklahoma, of an examination of clouds by high resolution digital photography from the surface looking vertically upward. A commercially available camera having 35-mm equivalent focal length up to 1200 mm (nominal resolution as fine as 6 µrad, which corresponds to 9 mm for cloud height 1.5 km) is used to obtain a measure of zenith radiance of a 30 m × 30 m domain as a two-dimensional image consisting of 3456 × 3456 pixels (12 million pixels). Downwelling zenith radiance varies substantiallymore » within single images and between successive images obtained at 4-s intervals. Variation in zenith radiance found on scales down to about 10 cm is attributed to variation in cloud optical depth (COD). Attention here is directed primarily to optically thin clouds, COD less than about 2. A radiation transfer model used to relate downwelling zenith radiance to COD and to relate the counts in the camera image to zenith radiance, permits determination of COD on a pixel-by-pixel basis. COD for thin clouds determined in this way exhibits considerable variation, for example, an order of magnitude within 15 m, a factor of 2 within 4 m, and 25% (0.12 to 0.15) over 14 cm. In conclusion, this approach, which examines cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opens new avenues for examination of cloud structure and evolution.« less

Comparison of optics and performance of a distal sensor high definition cystoscope, a distal sensor standard definition cystoscope, and a fiberoptic cystoscope.

PubMed

Lusch, Achim; Liss, Michael A; Greene, Peter; Abdelshehid, Corollos; Menhadji, Ashleigh; Bucur, Philip; Alipanah, Reza; McDougall, Elspeth; Landman, Jaime

2013-12-01

To evaluate performance characteristics and optics of a new generation high-definition distal sensor (HD-DS) flexible cystoscope, a standard-definition distal sensor (SD-DS) cystoscope, and a standard fiberoptic (FO) cystoscope. Three new cystoscopes (HD-DS, SD-DS, and FO) were compared for active deflection, irrigation flow, and optical characteristics. Each cystoscope was evaluated with an empty working channel and with various accessories. Optical characteristics (resolution, grayscale imaging, color representation, depth of field, and image brightness) were measured using United States Air Force (USAF)/Edmund Optics test targets and illumination meter. We digitally recorded a porcine cystoscopy in both clear and blood fields, with subsequent video analysis by 8 surgeons via questionnaire. The HD-DS had a higher resolution than the SD-DS and the FO at both 20 mm (6.35 vs 4.00 vs 2.24 line pairs/mm) and 10 mm (14.3 vs 7.13 vs 4.00 line pairs/mm) evaluations, respectively (P <.001 and P <.001). Color representation and depth of field (P = .001 and P <.001) were better in the HD-DS. When compared to the FO, the HD-DS and SD-DS demonstrated superior deflection up and irrigant flow with and without accessory present in the working channel, whereas image brightness was superior in the FO (P <.001, P = .001, and P <.001, respectively). Observers deemed the HD-DS cystoscope superior in visualization in clear and bloody fields, as well as for illumination. The new HD-DS provided significantly improved visualization in a clear and a bloody field, resolution, color representation, and depth of field compared to SD-DS and FO. Clinical correlation of these findings is pending. Copyright © 2013 Elsevier Inc. All rights reserved.

Depth resolved grazing incidence neutron scattering experiments from semi-infinite interfaces: a statistical analysis of the scattering contributions

NASA Astrophysics Data System (ADS)

Adlmann, Franz A.; Herbel, Jörg; Korolkovas, Airidas; Bliersbach, Andreas; Toperverg, Boris; Van Herck, Walter; Pálsson, Gunnar K.; Kitchen, Brian; Wolff, Max

2018-04-01

Grazing incidence neutron scattering experiments offer surface sensitivity by reflecting from an interface at momentum transfers close to total external reflection. Under these conditions the penetration depth is strongly non-linear and may change by many orders of magnitude. This fact imposes severe challenges for depth resolved experiments, since the brilliance of neutron beams is relatively low in comparison to e.g. synchrotron radiation. In this article we use probability density functions to calculate the contribution of scattering at different distances from an interface to the intensities registered on the detector. Our method has the particular advantage that the depth sensitivity is directly extracted from the scattering pattern itself. Hence for perfectly known samples exact resolution functions can be calculated and visa versa. We show that any tails in the resolution function, e.g. Gaussian shaped, hinders depth resolved experiments. More importantly we provide means for a descriptive statistical analysis of detector images with respect to the scattering contributions and show that even for perfect resolution near surface scattering is hardly accessible.

Ground truth spectrometry and imagery of eruption clouds to maximize utility of satellite imagery

NASA Technical Reports Server (NTRS)

Rose, William I.

1993-01-01

Field experiments with thermal imaging infrared radiometers were performed and a laboratory system was designed for controlled study of simulated ash clouds. Using AVHRR (Advanced Very High Resolution Radiometer) thermal infrared bands 4 and 5, a radiative transfer method was developed to retrieve particle sizes, optical depth and particle mass involcanic clouds. A model was developed for measuring the same parameters using TIMS (Thermal Infrared Multispectral Scanner), MODIS (Moderate Resolution Imaging Spectrometer), and ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer). Related publications are attached.

Comparision of Bathymetry and Bottom Characteristics From Hyperspectral Remote Sensing Data and Shipborne Acoustic Measurements

NASA Astrophysics Data System (ADS)

McIntyre, M. L.; Naar, D. F.; Carder, K. L.; Howd, P. A.; Lewis, J. M.; Donahue, B. T.; Chen, F. R.

2002-12-01

There is growing interest in applying optical remote sensing techniques to shallow-water geological applications such as bathymetry and bottom characterization. Model inversions of hyperspectral remote-sensing reflectance imagery can provide estimates of bottom albedo and depth. This research was conducted in support of the HyCODE (Hyperspectral Coupled Ocean Dynamics Experiment) project in order to test optical sensor performance and the use of a hyperspectral remote-sensing reflectance algorithm for shallow waters in estimating bottom depths and reflectance. The objective of this project was to compare optically derived products of bottom depths and reflectance to shipborne acoustic measurements of bathymetry and backscatter. A set of three high-resolution, multibeam surveys within an 18 km by 1.5 km shore-perpendicular transect 5 km offshore of Sarasota, Florida were collected at water depths ranging from 8 m to 16 m. These products are compared to bottom depths derived from aircraft remote-sensing data collected with the AVIRIS (Airborne Visible-Infrared Imaging Spectrometer) instrument data by means of a semi-analytical remote sensing reflectance model. The pixel size of the multibeam bathymetry and AVIRIS data are 0.25 m and 10 m, respectively. When viewed at full resolution, the multibeam bathymetry data show small-scale sedimentary bedforms (wavelength ~10m, amplitude ~1m) that are not observed in the lower resolution hyperspectral bathymetry. However, model-derived bottom depths agree well with a smoothed version of the multibeam bathymetry. Depths derived from shipborne hyperspectral measurements were accurate within 13%. In areas where diver observations confirmed biological growth and bioturbation, derived bottom depths were less accurate. Acoustic backscatter corresponds well with the aircraft hyperspectral imagery and in situ measurements of bottom reflectance. Acoustic backscatter was used to define the distribution of different bottom types. Acoustic backscatter imagery corresponds well with the AVIRIS data in the middle to outer study area, implying a close correspondence between seafloor character and optical reflectance. AVIRIS data in the inner study area show poorer correspondence with the acoustic facies, indicating greater water column effects (turbidity). Acoustic backscatter as a proxy for bottom albedo, in conjunction with multibeam bathymetry data, will allow for more precise modeling of the optical signal in coastal environments.

Study of high-definition and stereoscopic head-aimed vision for improved teleoperation of an unmanned ground vehicle

NASA Astrophysics Data System (ADS)

Tyczka, Dale R.; Wright, Robert; Janiszewski, Brian; Chatten, Martha Jane; Bowen, Thomas A.; Skibba, Brian

2012-06-01

Nearly all explosive ordnance disposal robots in use today employ monoscopic standard-definition video cameras to relay live imagery from the robot to the operator. With this approach, operators must rely on shadows and other monoscopic depth cues in order to judge distances and object depths. Alternatively, they can contact an object with the robot's manipulator to determine its position, but that approach carries with it the risk of detonation from unintentionally disturbing the target or nearby objects. We recently completed a study in which high-definition (HD) and stereoscopic video cameras were used in addition to conventional standard-definition (SD) cameras in order to determine if higher resolutions and/or stereoscopic depth cues improve operators' overall performance of various unmanned ground vehicle (UGV) tasks. We also studied the effect that the different vision modes had on operator comfort. A total of six different head-aimed vision modes were used including normal-separation HD stereo, SD stereo, "micro" (reduced separation) SD stereo, HD mono, and SD mono (two types). In general, the study results support the expectation that higher resolution and stereoscopic vision aid UGV teleoperation, but the degree of improvement was found to depend on the specific task being performed; certain tasks derived notably more benefit from improved depth perception than others. This effort was sponsored by the Joint Ground Robotics Enterprise under Robotics Technology Consortium Agreement #69-200902 T01. Technical management was provided by the U.S. Air Force Research Laboratory's Robotics Research and Development Group at Tyndall AFB, Florida.

Depth-resolved sample composition analysis using laser-induced ablation-quadrupole mass spectrometry and laser-induced breakdown spectroscopy

NASA Astrophysics Data System (ADS)

Oelmann, J.; Gierse, N.; Li, C.; Brezinsek, S.; Zlobinski, M.; Turan, B.; Haas, S.; Linsmeier, Ch.

2018-06-01

Monitoring a sample's material composition became more and more important over the last years for both - industrial process control as well as for post mortem analysis in research and industrial development. Although material composition identification as well as a comparison with standard samples works fine, there is a lack of diagnostics which can provide quantitative information with depth resolution without any standard samples. We present a novel method utilizing a residual gas analysis with quadrupole mass spectrometry after picosecond laser-induced ablation and release of volatile species. In the present experiment, well characterized multilayer thin film solar cells (μc-Si:H and a-Si:D as p-i-n-junctions on ZnO:Al electrodes) are used as a set of well characterized material samples to demonstrate the capabilities of the new method. The linearity of the spectrometer signal to gas pressure simplifies its calibration and reduces its uncertainties in comparison with other analysis techniques, although high vacuum conditions (10-6 hPa to 10-7 hPa) are required to reach high sensitivity better than the percent-range. Moreover, the laser-ablation based sample analysis requires no preparation of the sample and is flexible regarding ablation rates. The application of a picosecond laser pulse ensures that the thermal penetration depth of the laser is in the same order of magnitude as the ablation rate, which enables to achieve depth resolutions in the order of 100 nm and avoids matrix mixing effects at the edge of the laser-induced crater in the sample.

Conjunctions between motion and disparity are encoded with the same spatial resolution as disparity alone.

PubMed

Allenmark, Fredrik; Read, Jenny C A

2012-10-10

Neurons in cortical area MT respond well to transparent streaming motion in distinct depth planes, such as caused by observer self-motion, but do not contain subregions excited by opposite directions of motion. We therefore predicted that spatial resolution for transparent motion/disparity conjunctions would be limited by the size of MT receptive fields, just as spatial resolution for disparity is limited by the much smaller receptive fields found in primary visual cortex, V1. We measured this using a novel "joint motion/disparity grating," on which human observers detected motion/disparity conjunctions in transparent random-dot patterns containing dots streaming in opposite directions on two depth planes. Surprisingly, observers showed the same spatial resolution for these as for pure disparity gratings. We estimate the limiting receptive field diameter at 11 arcmin, similar to V1 and much smaller than MT. Higher internal noise for detecting joint motion/disparity produces a slightly lower high-frequency cutoff of 2.5 cycles per degree (cpd) versus 3.3 cpd for disparity. This suggests that information on motion/disparity conjunctions is available in the population activity of V1 and that this information can be decoded for perception even when it is invisible to neurons in MT.

Depth-Related Gradients of Viral Activity in Lake Pavin

PubMed Central

Colombet, J.; Sime-Ngando, T.; Cauchie, H. M.; Fonty, G.; Hoffmann, L.; Demeure, G.

2006-01-01

High-resolution vertical sampling and determination of viral and prokaryotic parameters in a deep volcanic lake shows that in the absence of thermal stratification but within light, oxygen, and chlorophyll gradients, host availability empirically is prevalent over the physical and chemical environments and favors lytic over lysogenic “viral life cycles.” PMID:16751565

Bio-photonic detection method for morphological analysis of anthracnose disease and physiological disorders of Diospyros kaki

NASA Astrophysics Data System (ADS)

Wijesinghe, Ruchire Eranga; Lee, Seung-Yeol; Ravichandran, Naresh Kumar; Shirazi, Muhammad Faizan; Moon, Byungin; Jung, Hee-Young; Jeon, Mansik; Kim, Jeehyun

2017-04-01

The pathological and physiological defects in various types of fruits lead to large amounts of economical waste. It is well recognized that internal fruit defects due to pathological infections and physiological disorders can be effectively visualized at an initial stage of the disease using a well-known bio-photonic detection method called optical coherence tomography (OCT). This work investigates the use of OCT for identifying the morphological variations of anthracnose (bitter rot) disease infected and physiologically disordered Diospyros kaki (Asian Persimmon) fruits. An experiment was conducted using fruit samples that were carefully selected from persimmon orchards. Depth-resolved images with a high axial resolution were acquired using 850-nm-based spectral-domain OCT (SD-OCT) system. The obtained exemplary high-resolution two-dimensional and volumetric three-dimensional images revealed complementary morphological differences between healthy and defected samples. Moreover, the obtained depth-profile analysis results confirmed the disappearance of the healthy cell layers among the healthy-infected boundary regions. Thus, the proposed method has the potential to increase the diagnostic accuracy of the OCT technique used in agricultural plantations.

In vivo imaging of human photoreceptor mosaic with wavefront sensorless adaptive optics optical coherence tomography.

PubMed

Wong, Kevin S K; Jian, Yifan; Cua, Michelle; Bonora, Stefano; Zawadzki, Robert J; Sarunic, Marinko V

2015-02-01

Wavefront sensorless adaptive optics optical coherence tomography (WSAO-OCT) is a novel imaging technique for in vivo high-resolution depth-resolved imaging that mitigates some of the challenges encountered with the use of sensor-based adaptive optics designs. This technique replaces the Hartmann Shack wavefront sensor used to measure aberrations with a depth-resolved image-driven optimization algorithm, with the metric based on the OCT volumes acquired in real-time. The custom-built ultrahigh-speed GPU processing platform and fast modal optimization algorithm presented in this paper was essential in enabling real-time, in vivo imaging of human retinas with wavefront sensorless AO correction. WSAO-OCT is especially advantageous for developing a clinical high-resolution retinal imaging system as it enables the use of a compact, low-cost and robust lens-based adaptive optics design. In this report, we describe our WSAO-OCT system for imaging the human photoreceptor mosaic in vivo. We validated our system performance by imaging the retina at several eccentricities, and demonstrated the improvement in photoreceptor visibility with WSAO compensation.

Investigation of anodic TiO2 nanotube composition with high spatial resolution AES and ToF SIMS

NASA Astrophysics Data System (ADS)

Dronov, Alexey; Gavrilin, Ilya; Kirilenko, Elena; Dronova, Daria; Gavrilov, Sergey

2018-03-01

High resolution Scanning Auger Electron Spectroscopy (AES) and Time-of-Flight Secondary Ion Mass-Spectrometry (ToF SIMS) were used to investigate structure and elemental composition variation of both across an array of TiO2 nanotubes (NTs) and single tube of an array. The TiO2 NT array was grown by anodic oxidation of Ti foil in fluorine-containing ethylene glycol electrolyte. It was found that the studied anodic TiO2 nanotubes have a layered structure with rather sharp interfaces. The differences in AES depth profiling results of a single tube with the focused primary electron beam (point analysis) and over an area of 75 μm in diameter of a nanotube array with the defocused primary electron beam are discussed. Depth profiling by ToF SIMS was carried out over approximately the same size of a nanotube array to determine possible ionic fragments in the structure. The analysis results show that the combination of both mentioned methods is useful for a detailed analysis of nanostructures with complex morphology and multi-layered nature.

Optical technologies for TSV inspection

NASA Astrophysics Data System (ADS)

Aiyer, Arun A.; Maltsev, Nikolai; Ryu, Jae

2014-04-01

In this paper, Frontier Semiconductor will introduce a new technology that is referred to as Virtual Interface Technology (VIT™). VIT™ is a Fourier domain technique that utilizes temporal phase shear of the measurement beam. The unique configuration of the sensor enables measurement of wafer and bonded stack thicknesses ranging from a few microns to millimeters with measurement repeatability ~ nm and resolution of approximately 0.1% of nominal thickness or depth. We will present data on high aspect ratio via measurements (depth, top critical dimension, bottom critical dimension, via bottom profile and side wall angle), bonded wafer stack thickness, and Cu bump measurements. A complimentary tool developed at FSM is a high resolution μRaman spectrometer to measure stress-change in Si lattice induced by Through Silicon Via (TSV) processes. These measurements are important to determine Keep-Out-Zone in the areas where devices are built so that the engineered gate strain is not altered by TSV processing induced strain. Applications include via post-etch; via post fill, and bottom Cu nail stress measurements. The capabilities of and measurement results from both tools are discussed below.

High Spectral Resolution Lidar Measurements of Multiple Scattering

NASA Technical Reports Server (NTRS)

Eloranta, E. W.; Piironen, P.

1996-01-01

The University of Wisconsin High Spectral Resolution Lidar (HSRL) provides unambiguous measurements of backscatter cross section, backscatter phase function, depolarization, and optical depth. This is accomplished by dividing the lidar return into separate particulate and molecular contributions. The molecular return is then used as a calibration target. We have modified the HSRL to use an I2 molecular absorption filter to separate aerosol and molecular signals. This allows measurement in dense clouds. Useful profiles extend above the cloud base until the two way optical depth reaches values between 5 and 6; beyond this, photon counting errors become large. In order to observe multiple scattering, the HSRL includes a channel which records the combined aerosol and molecular lidar return simultaneously with the spectrometer channel measurements of optical properties. This paper describes HSRL multiple scattering measurements from both water and ice clouds. These include signal strengths and depolarizations as a function of receiver field of view. All observations include profiles of extinction and backscatter cross sections. Measurements are also compared to predictions of a multiple scattering model based on small angle approximations.

40 MHz high-frequency ultrafast ultrasound imaging.

PubMed

Huang, Chih-Chung; Chen, Pei-Yu; Peng, Po-Hsun; Lee, Po-Yang

2017-06-01

Ultrafast high-frame-rate ultrasound imaging based on coherent-plane-wave compounding has been developed for many biomedical applications. Most coherent-plane-wave compounding systems typically operate at 3-15 MHz, and the image resolution for this frequency range is not sufficient for visualizing microstructure tissues. Therefore, the purpose of this study was to implement a high-frequency ultrafast ultrasound imaging operating at 40 MHz. The plane-wave compounding imaging and conventional multifocus B-mode imaging were performed using the Field II toolbox of MATLAB in simulation study. In experiments, plane-wave compounding images were obtained from a 256 channel ultrasound research platform with a 40 MHz array transducer. All images were produced by point-spread functions and cyst phantoms. The in vivo experiment was performed from zebrafish. Since high-frequency ultrasound exhibits a lower penetration, chirp excitation was applied to increase the imaging depth in simulation. The simulation results showed that a lateral resolution of up to 66.93 μm and a contrast of up to 56.41 dB were achieved when using 75-angles plane waves in compounding imaging. The experimental results showed that a lateral resolution of up to 74.83 μm and a contrast of up to 44.62 dB were achieved when using 75-angles plane waves in compounding imaging. The dead zone and compounding noise are about 1.2 mm and 2.0 mm in depth for experimental compounding imaging, respectively. The structure of zebrafish heart was observed clearly using plane-wave compounding imaging. The use of fewer than 23 angles for compounding allowed a frame rate higher than 1000 frames per second. However, the compounding imaging exhibits a similar lateral resolution of about 72 μm as the angle of plane wave is higher than 10 angles. This study shows the highest operational frequency for ultrafast high-frame-rate ultrasound imaging. © 2017 American Association of Physicists in Medicine.

Development of a novel depth of interaction PET detector using highly multiplexed G-APD cross-strip encoding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kolb, A., E-mail: armin.kolb@med.uni-tuebingen.de; Parl, C.; Liu, C. C.

Purpose: The aim of this study was to develop a prototype PET detector module for a combined small animal positron emission tomography and magnetic resonance imaging (PET/MRI) system. The most important factor for small animal imaging applications is the detection sensitivity of the PET camera, which can be optimized by utilizing longer scintillation crystals. At the same time, small animal PET systems must yield a high spatial resolution. The measured object is very close to the PET detector because the bore diameter of a high field animal MR scanner is limited. When used in combination with long scintillation crystals, thesemore » small-bore PET systems generate parallax errors that ultimately lead to a decreased spatial resolution. Thus, we developed a depth of interaction (DoI) encoding PET detector module that has a uniform spatial resolution across the whole field of view (FOV), high detection sensitivity, compactness, and insensitivity to magnetic fields. Methods: The approach was based on Geiger mode avalanche photodiode (G-APD) detectors with cross-strip encoding. The number of readout channels was reduced by a factor of 36 for the chosen block elements. Two 12 × 2 G-APD strip arrays (25μm cells) were placed perpendicular on each face of a 12 × 12 lutetium oxyorthosilicate crystal block with a crystal size of 1.55 × 1.55 × 20 mm. The strip arrays were multiplexed into two channels and used to calculate the x, y coordinates for each array and the deposited energy. The DoI was measured in step sizes of 1.8 mm by a collimated {sup 18}F source. The coincident resolved time (CRT) was analyzed at all DoI positions by acquiring the waveform for each event and applying a digital leading edge discriminator. Results: All 144 crystals were well resolved in the crystal flood map. The average full width half maximum (FWHM) energy resolution of the detector was 12.8% ± 1.5% with a FWHM CRT of 1.14 ± 0.02 ns. The average FWHM DoI resolution over 12 crystals was 2.90 ± 0.15 mm. Conclusions: The novel DoI PET detector, which is based on strip G-APD arrays, yielded a DoI resolution of 2.9 mm and excellent timing and energy resolution. Its high multiplexing factor reduces the number of electronic channels. Thus, this cross-strip approach enables low-cost, high-performance PET detectors for dedicated small animal PET and PET/MRI and potentially clinical PET/MRI systems.« less

A method to improve the range resolution in stepped frequency continuous wave radar

NASA Astrophysics Data System (ADS)

Kaczmarek, Paweł

2018-04-01

In the paper one of high range resolution methods - Aperture Sampling - was analysed. Unlike MUSIC based techniques it proved to be very efficient in terms of achieving unambiguous synthetic range profile for ultra-wideband stepped frequency continuous wave radar. Assuming that minimal distance required to separate two targets in depth (distance) corresponds to -3 dB width of received echo, AS provided a 30,8 % improvement in range resolution in analysed scenario, when compared to results of applying IFFT. Output data is far superior in terms of both improved range resolution and reduced side lobe level than used typically in this area Inverse Fourier Transform. Furthermore it does not require prior knowledge or an estimate of number of targets to be detected in a given scan.

Improving lateral resolution and image quality of optical coherence tomography by the multi-frame superresolution technique for 3D tissue imaging

PubMed Central

Shen, Kai; Lu, Hui; Baig, Sarfaraz; Wang, Michael R.

2017-01-01

The multi-frame superresolution technique is introduced to significantly improve the lateral resolution and image quality of spectral domain optical coherence tomography (SD-OCT). Using several sets of low resolution C-scan 3D images with lateral sub-spot-spacing shifts on different sets, the multi-frame superresolution processing of these sets at each depth layer reconstructs a higher resolution and quality lateral image. Layer by layer processing yields an overall high lateral resolution and quality 3D image. In theory, the superresolution processing including deconvolution can solve the diffraction limit, lateral scan density and background noise problems together. In experiment, the improved lateral resolution by ~3 times reaching 7.81 µm and 2.19 µm using sample arm optics of 0.015 and 0.05 numerical aperture respectively as well as doubling the image quality has been confirmed by imaging a known resolution test target. Improved lateral resolution on in vitro skin C-scan images has been demonstrated. For in vivo 3D SD-OCT imaging of human skin, fingerprint and retina layer, we used the multi-modal volume registration method to effectively estimate the lateral image shifts among different C-scans due to random minor unintended live body motion. Further processing of these images generated high lateral resolution 3D images as well as high quality B-scan images of these in vivo tissues. PMID:29188089

Experimental validation of a 2D overland flow model using high resolution water depth and velocity data

NASA Astrophysics Data System (ADS)

Cea, L.; Legout, C.; Darboux, F.; Esteves, M.; Nord, G.

2014-05-01

This paper presents a validation of a two-dimensional overland flow model using empirical laboratory data. Unlike previous publications in which model performance is evaluated as the ability to predict an outlet hydrograph, we use high resolution 2D water depth and velocity data to analyze to what degree the model is able to reproduce the spatial distribution of these variables. Several overland flow conditions over two impervious surfaces of the order of one square meter with different micro and macro-roughness characteristics are studied. The first surface is a simplified representation of a sinusoidal terrain with three crests and furrows, while the second one is a mould of a real agricultural seedbed terrain. We analyze four different bed friction parameterizations and we show that the performance of formulations which consider the transition between laminar, smooth turbulent and rough turbulent flow do not improve the results obtained with Manning or Keulegan formulas for rough turbulent flow. The simulations performed show that using Keulegan formula with a physically-based definition of the bed roughness coefficient, a two-dimensional shallow water model is able to reproduce satisfactorily the flow hydrodynamics. It is shown that, even if the resolution of the topography data and numerical mesh are high enough to include all the small scale features of the bed surface, the roughness coefficient must account for the macro-roughness characteristics of the terrain in order to correctly reproduce the flow hydrodynamics.

Single particle tracking through highly scattering media with multiplexed two-photon excitation

NASA Astrophysics Data System (ADS)

Perillo, Evan; Liu, Yen-Liang; Liu, Cong; Yeh, Hsin-Chih; Dunn, Andrew K.

2015-03-01

3D single-particle tracking (SPT) has been a pivotal tool to furthering our understanding of dynamic cellular processes in complex biological systems, with a molecular localization accuracy (10-100 nm) often better than the diffraction limit of light. However, current SPT techniques utilize either CCDs or a confocal detection scheme which not only suffer from poor temporal resolution but also limit tracking to a depth less than one scattering mean free path in the sample (typically <15μm). In this report we highlight our novel design for a spatiotemporally multiplexed two-photon microscope which is able to reach sub-diffraction-limit tracking accuracy and sub-millisecond temporal resolution, but with a dramatically extended SPT range of up to 200 μm through dense cell samples. We have validated our microscope by tracking (1) fluorescent nanoparticles in a prescribed motion inside gelatin gel (with 1% intralipid) and (2) labeled single EGFR complexes inside skin cancer spheroids (at least 8 layers of cells thick) for ~10 minutes. Furthermore we discuss future capabilities of our multiplexed two-photon microscope design, specifically to the extension of (1) simultaneous multicolor tracking (i.e. spatiotemporal co-localization analysis) and (2) FRET studies (i.e. lifetime analysis). The high resolution, high depth penetration, and multicolor features of this microscope make it well poised to study a variety of molecular scale dynamics in the cell, especially related to cellular trafficking studies with in vitro tumor models and in vivo.

Remote sensing in support of high-resolution terrestrial carbon monitoring and modeling

NASA Astrophysics Data System (ADS)

Hurtt, G. C.; Zhao, M.; Dubayah, R.; Huang, C.; Swatantran, A.; ONeil-Dunne, J.; Johnson, K. D.; Birdsey, R.; Fisk, J.; Flanagan, S.; Sahajpal, R.; Huang, W.; Tang, H.; Armstrong, A. H.

2014-12-01

As part of its Phase 1 Carbon Monitoring System (CMS) activities, NASA initiated a Local-Scale Biomass Pilot study. The goals of the pilot study were to develop protocols for fusing high-resolution remotely sensed observations with field data, provide accurate validation test areas for the continental-scale biomass product, and demonstrate efficacy for prognostic terrestrial ecosystem modeling. In Phase 2, this effort was expanded to the state scale. Here, we present results of this activity focusing on the use of remote sensing in high-resolution ecosystem modeling. The Ecosystem Demography (ED) model was implemented at 90 m spatial resolution for the entire state of Maryland. We rasterized soil depth and soil texture data from SSURGO. For hourly meteorological data, we spatially interpolated 32-km 3-hourly NARR into 1-km hourly and further corrected them at monthly level using PRISM data. NLCD data were used to mask sand, seashore, and wetland. High-resolution 1 m forest/non-forest mapping was used to define forest fraction of 90 m cells. Three alternative strategies were evaluated for initialization of forest structure using high-resolution lidar, and the model was used to calculate statewide estimates of forest biomass, carbon sequestration potential, time to reach sequestration potential, and sensitivity to future forest growth and disturbance rates, all at 90 m resolution. To our knowledge, no dynamic ecosystem model has been run at such high spatial resolution over such large areas utilizing remote sensing and validated as extensively. There are over 3 million 90 m land cells in Maryland, greater than 43 times the ~73,000 half-degree cells in a state-of-the-art global land model.

High-definition resolution three-dimensional imaging systems in laparoscopic radical prostatectomy: randomized comparative study with high-definition resolution two-dimensional systems.

PubMed

Kinoshita, Hidefumi; Nakagawa, Ken; Usui, Yukio; Iwamura, Masatsugu; Ito, Akihiro; Miyajima, Akira; Hoshi, Akio; Arai, Yoichi; Baba, Shiro; Matsuda, Tadashi

2015-08-01

Three-dimensional (3D) imaging systems have been introduced worldwide for surgical instrumentation. A difficulty of laparoscopic surgery involves converting two-dimensional (2D) images into 3D images and depth perception rearrangement. 3D imaging may remove the need for depth perception rearrangement and therefore have clinical benefits. We conducted a multicenter, open-label, randomized trial to compare the surgical outcome of 3D-high-definition (HD) resolution and 2D-HD imaging in laparoscopic radical prostatectomy (LRP), in order to determine whether an LRP under HD resolution 3D imaging is superior to that under HD resolution 2D imaging in perioperative outcome, feasibility, and fatigue. One-hundred twenty-two patients were randomly assigned to a 2D or 3D group. The primary outcome was time to perform vesicourethral anastomosis (VUA), which is technically demanding and may include a number of technical difficulties considered in laparoscopic surgeries. VUA time was not significantly shorter in the 3D group (26.7 min, mean) compared with the 2D group (30.1 min, mean) (p = 0.11, Student's t test). However, experienced surgeons and 3D-HD imaging were independent predictors for shorter VUA times (p = 0.000, p = 0.014, multivariate logistic regression analysis). Total pneumoperitoneum time was not different. No conversion case from 3D to 2D or LRP to open RP was observed. Fatigue was evaluated by a simulation sickness questionnaire and critical flicker frequency. Results were not different between the two groups. Subjective feasibility and satisfaction scores were significantly higher in the 3D group. Using a 3D imaging system in LRP may have only limited advantages in decreasing operation times over 2D imaging systems. However, the 3D system increased surgical feasibility and decreased surgeons' effort levels without inducing significant fatigue.

High resolution crustal image of South California Continental Borderland: Reverse time imaging including multiples

NASA Astrophysics Data System (ADS)

Bian, A.; Gantela, C.

2014-12-01

Strong multiples were observed in marine seismic data of Los Angeles Regional Seismic Experiment (LARSE).It is crucial to eliminate these multiples in conventional ray-based or one-way wave-equation based depth image methods. As long as multiples contain information of target zone along travelling path, it's possible to use them as signal, to improve the illumination coverage thus enhance the image quality of structural boundaries. Reverse time migration including multiples is a two-way wave-equation based prestack depth image method that uses both primaries and multiples to map structural boundaries. Several factors, including source wavelet, velocity model, back ground noise, data acquisition geometry and preprocessing workflow may influence the quality of image. The source wavelet is estimated from direct arrival of marine seismic data. Migration velocity model is derived from integrated model building workflow, and the sharp velocity interfaces near sea bottom needs to be preserved in order to generate multiples in the forward and backward propagation steps. The strong amplitude, low frequency marine back ground noise needs to be removed before the final imaging process. High resolution reverse time image sections of LARSE Lines 1 and Line 2 show five interfaces: depth of sea-bottom, base of sedimentary basins, top of Catalina Schist, a deep layer and a possible pluton boundary. Catalina Schist shows highs in the San Clemente ridge, Emery Knoll, Catalina Ridge, under Catalina Basin on both the lines, and a minor high under Avalon Knoll. The high of anticlinal fold in Line 1 is under the north edge of Emery Knoll and under the San Clemente fault zone. An area devoid of any reflection features are interpreted as sides of an igneous plume.

TU-A-9A-06: Semi-Automatic Segmentation of Skin Cancer in High-Frequency Ultrasound Images: Initial Comparison with Histology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Y; Li, X; Fishman, K

Purpose: In skin-cancer radiotherapy, the assessment of skin lesion is challenging, particularly with important features such as the depth and width hard to determine. The aim of this study is to develop interative segmentation method to delineate tumor boundary using high-frequency ultrasound images and to correlate the segmentation results with the histopathological tumor dimensions. Methods: We analyzed 6 patients who comprised a total of 10 skin lesions involving the face, scalp, and hand. The patient’s various skin lesions were scanned using a high-frequency ultrasound system (Episcan, LONGPORT, INC., PA, U.S.A), with a 30-MHz single-element transducer. The lateral resolution was 14.6more » micron and the axial resolution was 3.85 micron for the ultrasound image. Semiautomatic image segmentation was performed to extract the cancer region, using a robust statistics driven active contour algorithm. The corresponding histology images were also obtained after tumor resection and served as the reference standards in this study. Results: Eight out of the 10 lesions are successfully segmented. The ultrasound tumor delineation correlates well with the histology assessment, in all the measurements such as depth, size, and shape. The depths measured by the ultrasound have an average of 9.3% difference comparing with that in the histology images. The remaining 2 cases suffered from the situation of mismatching between pathology and ultrasound images. Conclusion: High-frequency ultrasound is a noninvasive, accurate and easy-accessible modality to image skin cancer. Our segmentation method, combined with high-frequency ultrasound technology, provides a promising tool to estimate the extent of the tumor to guide the radiotherapy procedure and monitor treatment response.« less

Structured illumination 3D microscopy using adaptive lenses and multimode fibers

NASA Astrophysics Data System (ADS)

Czarske, Jürgen; Philipp, Katrin; Koukourakis, Nektarios

2017-06-01

Microscopic techniques with high spatial and temporal resolution are required for in vivo studying biological cells and tissues. Adaptive lenses exhibit strong potential for fast motion-free axial scanning. However, they also lead to a degradation of the achievable resolution because of aberrations. This hurdle can be overcome by digital optical technologies. We present a novel High-and-Low-frequency (HiLo) 3D-microscope using structured illumination and an adaptive lens. Uniform illumination is used to obtain optical sectioning for the high-frequency (Hi) components of the image, and nonuniform illumination is needed to obtain optical sectioning for the low-frequency (Lo) components of the image. Nonuniform illumination is provided by a multimode fiber. It ensures robustness against optical aberrations of the adaptive lens. The depth-of-field of our microscope can be adjusted a-posteriori by computational optics. It enables to create flexible scans, which compensate for irregular axial measurement positions. The adaptive HiLo 3D-microscope provides an axial scanning range of 1 mm with an axial resolution of about 4 microns and sub-micron lateral resolution over the full scanning range. In result, volumetric measurements with high temporal and spatial resolution are provided. Demonstration measurements of zebrafish embryos with reporter gene-driven fluorescence in the thyroid gland are presented.

Dust aerosols above the south polar cap of Mars as seen by OMEGA

NASA Astrophysics Data System (ADS)

Vincendon, M.; Langevin, Y.; Poulet, F.; Bibring, J.-P.; Gondet, B.; Jouglet, D.; Omega Team

2008-08-01

The time evolution of atmospheric dust at high southern latitudes on Mars has been determined using observations of the south seasonal cap acquired in the near infrared (1-2.65 μm) by OMEGA/Mars Express in 2005. Observations at different solar zenith angles and one EPF sequence demonstrate that the reflectance in the 2.64 μm saturated absorption band of the surface CO 2 ice is mainly due to the light scattered by aerosols above most places of the seasonal cap. We have mapped the total optical depth of dust aerosols in the near-IR above the south seasonal cap of Mars from mid-spring to early summer with a time resolution ranging from one day to one week and a spatial resolution of a few kilometers. The optical depth above the south perennial cap is determined on a longer time range covering southern spring and summer. A constant set of optical properties of dust aerosols is consistent with OMEGA observations during the analyzed period. Strong variations of the optical depth are observed over small horizontal and temporal scales, corresponding in part to moving dust clouds. The late summer peak in dust opacity observed by Opportunity in 2005 propagated to the south pole contrarily to that observed in mid spring. This may be linked to evidence for dust scavenging by water ice-rich clouds circulating at high southern latitudes at this season.

Unravel Spurious Bathymetric Highs on the Western Continental Margin of India

NASA Astrophysics Data System (ADS)

Mahale, V. P.

2017-12-01

Swath mapping multibeam echosounder systems (MBES) have become a de-facto-standard component on today's research vessel (RV). Modern MBES provide high temporal and spatial resolution for mapping the seabed morphology. Improved resolution capabilities requires large hull mounted transceivers, which after installation undergoes calibration procedure during the sea acceptance test (SAT). To accurately estimate various vessel offsets and lever-arm corrections, the installer runs calibration lines over a prominent seabed feature. In the year 2014, while conducting SAT for the RV Sindhu Sadhana and calibrate the ATLAS make MBES system, a hunt was on to find suitable bathymetric highs in the region of operation. Regional hydrographic charts published by the National Hydrographic Office, in India were referred to locate such features. Two bathymetric highs were spotted on the chart that are 20 km apart and 40 km west of the shelf-edge on the Western Continental Margin of India. The charted depth on these highs are 252 m and 343 m on a relatively even but moderately sloppy seabed, representing an isolated elevations of 900 m. The geographic locations of these knolls were verified with the GEBCO's 30-arc second gridded bathymetry, before heading out for the waypoints. There were no signs of knolls at those locations, indicating erroneous georeferencing. Hence, the region was subsequently revisited in the following years until an area of 3000 sq. km was mapped. Failing to locate the bathymetric highs they are referred to as 'spurious'. Investigation was planned to unravel the rationale of existence and sustenance of these knolls in the hydrographic charts since historic time. Tweaking the MBES settings reveals existence of strong acoustic scattering layer, to which even the depth tracking gate gets locked-on and is documented. Analogically, in the past, ships transecting the region equipped with single beam echosounder tuned for shallow depth operations might have charted the scattering layer and contributed to crowdsourced bathymetry eventually. Literature study indicates deepsea scattering layer (DSL) prevalent in the study region, having diurnal variation with depths similar to those on the chart. The author thus hypothesize that DSL would have been the rationale behind the existence of spurious bathymetric highs.

Evaluating UAV and LiDAR Retrieval of Snow Depth in a Coniferous Forest in Arizona

NASA Astrophysics Data System (ADS)

Van Leeuwen, W. J. D.; Broxton, P.; Biederman, J. A.

2017-12-01

Remote sensing of snow depth and cover in forested environments is challenging. Trees interfere with the remote sensing of snowpack below the canopy and cause large variations in the spatial distribution of the snowpack itself (e.g. between below canopy environments to shaded gaps to open clearings). The distribution of trees and topographic variation make it challenging to monitor the snowpack with in-situ observations. Airborne LiDAR has improved our ability to monitor snowpack over large areas in montane and forested environments because of its high sampling rate and ability to penetrate the canopy. However, these LiDAR flights can be too expensive and time-consuming to process, making it hard to use them for real-time snow monitoring. In this research, we evaluate Structure from Motion (SfM) as an alternative to Airborne LiDAR to generate high-resolution snow depth data in forested environments. This past winter, we conducted a snow field campaign over Arizona's Mogollon Rim where we acquired aerial LiDAR, multi-angle aerial photography from a UAV, and extensive field observations of snow depth at two sites. LiDAR and SFM derived snow depth maps were generated by comparing "snow-on" and "snow-off" LiDAR and SfM data. The SfM- and LiDAR-generated snow depth maps were similar at a site with fewer trees, though there were more discrepancies at a site with more trees. Both compared reasonably well with the field observations at the sparser forested site, with poorer agreement at the denser forested site. Finally, although the SfM produced point clouds with much higher point densities than the aerial LiDAR, the SfM was not able to produce meaningful snow depth estimates directly underneath trees and had trouble in areas with deep shadows. Based on these findings, we are optimizing our UAV data acquisition strategies for this upcoming field season. We are using these data, along with high-resolution hydrological modeling, to gain a better understanding of how different forest structural, climatic and topographic conditions affect the snowpack and consequently the water resources available to the Salt River Project, a water utility providing power and water to millions of customers in the Phoenix area

Impact of radiofrequency ablation geometry on electrical conduction

NASA Astrophysics Data System (ADS)

Rivas, Rhiana N.; Lye, Theresa H.; Hendon, Christine P.

2018-02-01

The gold standard of current treatment for atrial fibrillation is radiofrequency ablation (RFA). Single RFA procedures have low long-term, single-procedure success rates, which can be attributed to factors including inability to measure and visualize lesion depth in real time and incomplete knowledge of how atrial fibrillation manifests and persists. One way to address this problem is to develop a heart model that accurately fits lesion dimensions and depth using OCT to extract structural information. Twenty-three lesions of varying transmurality in left and right swine atrial tissue have been imaged with a Thorlabs OCT system with 6.5-micron axial resolution and a custom Ultra High Resolution system with 2.5-micron axial resolution. The boundaries of the ablation lesions were identified by the appearance of the birefringence artifact to identify areas of un-ablated tissue, as well as by changes to depth penetration and structural features, including decreased contrast between the endocardium and myocardium and disappearance of collagen fibers within the ablation lesion. Using these features, the lateral positions of the lesion boundaries were identified. An algorithm that fit ellipses to the lesion contours modeled the ablation geometry in depth. Lesion dimensions and shape were confirmed by comparison with trichrome histological processing. Finite-element models were fitted with these parameters and electrophysiological simulations were run with the Continuity 6 package. Next steps include correlating lesion geometry to conduction velocity, and including further tissue complexity such as varying tissue composition and fiber orientation. Additional models of linear lesions with gaps and adjacent lesions created with non-perpendicular contact will be created. This work will provide insight into how lesion geometry, tissue composition, and fiber organization impact electrophysiological propagation.

Video-rate functional photoacoustic microscopy at depths

NASA Astrophysics Data System (ADS)

Wang, Lidai; Maslov, Konstantin; Xing, Wenxin; Garcia-Uribe, Alejandro; Wang, Lihong V.

2012-10-01

We report the development of functional photoacoustic microscopy capable of video-rate high-resolution in vivo imaging in deep tissue. A lightweight photoacoustic probe is made of a single-element broadband ultrasound transducer, a compact photoacoustic beam combiner, and a bright-field light delivery system. Focused broadband ultrasound detection provides a 44-μm lateral resolution and a 28-μm axial resolution based on the envelope (a 15-μm axial resolution based on the raw RF signal). Due to the efficient bright-field light delivery, the system can image as deep as 4.8 mm in vivo using low excitation pulse energy (28 μJ per pulse, 0.35 mJ/cm2 on the skin surface). The photoacoustic probe is mounted on a fast-scanning voice-coil scanner to acquire 40 two-dimensional (2-D) B-scan images per second over a 9-mm range. High-resolution anatomical imaging is demonstrated in the mouse ear and brain. Via fast dual-wavelength switching, oxygen dynamics of mouse cardio-vasculature is imaged in realtime as well.

Charge-sensitive front-end electronics with operational amplifiers for CdZnTe detectors

NASA Astrophysics Data System (ADS)

Födisch, P.; Berthel, M.; Lange, B.; Kirschke, T.; Enghardt, W.; Kaever, P.

2016-09-01

Cadmium zinc telluride (CdZnTe, CZT) radiation detectors are suitable for a variety of applications, due to their high spatial resolution and spectroscopic energy performance at room temperature. However, state-of-the-art detector systems require high-performance readout electronics. Though an application-specific integrated circuit (ASIC) is an adequate solution for the readout, requirements of high dynamic range and high throughput are not available in any commercial circuit. Consequently, the present study develops the analog front-end electronics with operational amplifiers for an 8×8 pixelated CZT detector. For this purpose, we modeled an electrical equivalent circuit of the CZT detector with the associated charge-sensitive amplifier (CSA). Based on a detailed network analysis, the circuit design is completed by numerical values for various features such as ballistic deficit, charge-to-voltage gain, rise time, and noise level. A verification of the performance is carried out by synthetic detector signals and a pixel detector. The experimental results with the pixel detector assembly and a 22Na radioactive source emphasize the depth dependence of the measured energy. After pulse processing with depth correction based on the fit of the weighting potential, the energy resolution is 2.2% (FWHM) for the 511 keV photopeak.

Anthropogenic inputs of dissolved organic matter in New York Harbor

NASA Astrophysics Data System (ADS)

Gardner, G. B.; Chen, R. F.; Olavasen, J.; Peri, F.

2016-02-01

The Hudson River flows into the Atlantic Ocean through a highly urbanized region which includes New York City to the east and Newark, New Jersey to the west. As a result, the export of Dissolved Organic Carbon (DOC) from the Hudson to the Atlantic Ocean includes a significant anthropogenic component. A series of high resolution studies of the DOC dynamics of this system were conducted between 2003 and 2010. These included both the Hudson and adjacent large waterways (East River, Newark Bay, Kill Van Kull and Arthur Kill) using coastal research vessels and smaller tributaries (Hackensack, Pasaic and Raritan rivers) using a 25' boat. In both cases measurements were made using towed instrument packages which could be cycled from near surface to near bottom depths with horizontal resolution of approximately 20 to 200 meters depending on depth and deployment strategy. Sensors on the instrument packages included a CTD to provide depth and salinity information and a chromophoric dissolved organic matter(CDOM) fluorometer to measure the fluorescent fraction of the DOC. Discrete samples allowed calibration of the fluorometer and the CDOM data to be related to DOC. The combined data set from these cruises identified multiple scales of source and transport processes for DOC within the Hudson River/New York Harbor region. The Hudson carries a substantial amount of natural DOC from its 230 km inland stretch. Additional sources exist in fringing salt marshes adjacent to the Hackensack and Raritan rivers. However the lower Hudson/New Harbor region receives a large input of DOC from multiple publically owned treatment works (POTW) discharges. The high resolution surveys allowed us to elucidate the distribution of these sources and the manner in which they are rapidly mixed to create the total export. We estimate that anthropogenic sources account for up to 2.5 times the DOC flux contributed by natural processes.

Advanced Multivariate Inversion Techniques for High Resolution 3D Geophysical Modeling (Invited)

NASA Astrophysics Data System (ADS)

Maceira, M.; Zhang, H.; Rowe, C. A.

2009-12-01

We focus on the development and application of advanced multivariate inversion techniques to generate a realistic, comprehensive, and high-resolution 3D model of the seismic structure of the crust and upper mantle that satisfies several independent geophysical datasets. Building on previous efforts of joint invesion using surface wave dispersion measurements, gravity data, and receiver functions, we have added a fourth dataset, seismic body wave P and S travel times, to the simultaneous joint inversion method. We present a 3D seismic velocity model of the crust and upper mantle of northwest China resulting from the simultaneous, joint inversion of these four data types. Surface wave dispersion measurements are primarily sensitive to seismic shear-wave velocities, but at shallow depths it is difficult to obtain high-resolution velocities and to constrain the structure due to the depth-averaging of the more easily-modeled, longer-period surface waves. Gravity inversions have the greatest resolving power at shallow depths, and they provide constraints on rock density variations. Moreover, while surface wave dispersion measurements are primarily sensitive to vertical shear-wave velocity averages, body wave receiver functions are sensitive to shear-wave velocity contrasts and vertical travel-times. Addition of the fourth dataset, consisting of seismic travel-time data, helps to constrain the shear wave velocities both vertically and horizontally in the model cells crossed by the ray paths. Incorporation of both P and S body wave travel times allows us to invert for both P and S velocity structure, capitalizing on empirical relationships between both wave types’ seismic velocities with rock densities, thus eliminating the need for ad hoc assumptions regarding the Poisson ratios. Our new tomography algorithm is a modification of the Maceira and Ammon joint inversion code, in combination with the Zhang and Thurber TomoDD (double-difference tomography) program.

Vertical distribution of the sound-scattering layer in the Amundsen Sea, Antarctica

NASA Astrophysics Data System (ADS)

Lee, Hyungbeen; La, Hyoung Sul; Kang, Donhyug; Lee, SangHoon

2018-03-01

Mid-trophic level at high-latitude coastal water in the Southern Ocean reside unique geographical condition with sea ice, coastal polynya, and ice shelf. To investigate the regional differences in their vertical distribution during summer, we examined acoustic backscatter data from scientific echo sounder, collected in the three representative regions in the Amundsen Sea: pack ice zone, coastal polynya zone, and ice shelf zone. The weighted mean depths (WMDs) representing zooplankton were calculated with the high resolution acoustic backscatter (1-m depth) to identify the vertical variability of the sound-scattering layer (SSL). WMDs were mainly distributed between 50 and 130 m exhibiting clear regional differences. The WMDs were detected in the shallow depth ranged between 48 and 84 m within the pack ice and coastal polynya, whereas they were observed at deeper depths around near ice shelf ranged between 117 and 126 m. WMDs varied with changing the stratification of water column structure representing strong linear relationship with the mixed layer depth (r = 0.69). This finding implies that understanding the essential forcing of zooplankton behavior will improve our ability to assess the coastal ecosystem in the Southern Ocean facing dramatic change.

Development of High Resolution Hard X-Ray Telescope with Multilayer Coatings

NASA Technical Reports Server (NTRS)

Brinton, John C. (Technical Monitor); Gorenstein, Paul

2004-01-01

The major objective of this program is the development of a focusing hard X-ray telescope with moderately high angular resolution, i .e. comparable to the telescopes of XMM-Newton. The key ingredients of the telescope are a depth graded multilayer coatings and electroformed nickel substrates that are considerably lighter weight than those of previous missions such as XMM-Newton, which have had conventional single metal layer reflective coatings and have operated at much lower energy X-rays. The ultimate target mission for this technology is the Hard X-Ray Telescope (HXT) of the Constellation X-Ray Mission. However, it is applicable to potential SMEX and MIDEX programs as well.

Comparison of Focused and Near-Field Imaging of Spray on Foam Insulation (SOFI) at Millimeter Wave Frequencies

NASA Technical Reports Server (NTRS)

Kharkovshy, S.; Zoughi, R.; Hepburn, F. L.

2007-01-01

Millimeter wave imaging techniques can provide high spatial-resolution images of various composites. Lens antennas may be incorporated into the imaging system to provide a small incident beam footprint. Another approach may involve the use of horn antennas, which if operating in their near-fields, images with reasonably high spatial-resolutions may also be obtained. This paper gives a comparison between such near-field and focused far-field imaging of the Space Shuttle Spray on Foam Insulation (SOFI) used in its external fuel tank at millimeter wave frequencies. Small horn antennas and lens antennas with relatively long depth of focus were used in this investigation.

Three-dimensional super-resolved live cell imaging through polarized multi-angle TIRF.

PubMed

Zheng, Cheng; Zhao, Guangyuan; Liu, Wenjie; Chen, Youhua; Zhang, Zhimin; Jin, Luhong; Xu, Yingke; Kuang, Cuifang; Liu, Xu

2018-04-01

Measuring three-dimensional nanoscale cellular structures is challenging, especially when the structure is dynamic. Owing to the informative total internal reflection fluorescence (TIRF) imaging under varied illumination angles, multi-angle (MA) TIRF has been examined to offer a nanoscale axial and a subsecond temporal resolution. However, conventional MA-TIRF still performs badly in lateral resolution and fails to characterize the depth image in densely distributed regions. Here, we emphasize the lateral super-resolution in the MA-TIRF, exampled by simply introducing polarization modulation into the illumination procedure. Equipped with a sparsity and accelerated proximal algorithm, we examine a more precise 3D sample structure compared with previous methods, enabling live cell imaging with a temporal resolution of 2 s and recovering high-resolution mitochondria fission and fusion processes. We also shared the recovery program, which is the first open-source recovery code for MA-TIRF, to the best of our knowledge.

Prescription of land-surface boundary conditions in GISS GCM 2: A simple method based on high-resolution vegetation data bases

NASA Technical Reports Server (NTRS)

Matthews, E.

1984-01-01

A simple method was developed for improved prescription of seasonal surface characteristics and parameterization of land-surface processes in climate models. This method, developed for the Goddard Institute for Space Studies General Circulation Model II (GISS GCM II), maintains the spatial variability of fine-resolution land-cover data while restricting to 8 the number of vegetation types handled in the model. This was achieved by: redefining the large number of vegetation classes in the 1 deg x 1 deg resolution Matthews (1983) vegetation data base as percentages of 8 simple types; deriving roughness length, field capacity, masking depth and seasonal, spectral reflectivity for the 8 types; and aggregating these surface features from the 1 deg x 1 deg resolution to coarser model resolutions, e.g., 8 deg latitude x 10 deg longitude or 4 deg latitude x 5 deg longitude.

Factors Impacting Spatial Patterns of Snow Distribution in a Small Catchment near Nome, AK

NASA Astrophysics Data System (ADS)

Chen, M.; Wilson, C. J.; Charsley-Groffman, L.; Busey, R.; Bolton, W. R.

2017-12-01

Snow cover plays an important role in the climate, hydrology and ecological systems of the Arctic due to its influence on the water balance, thermal regimes, vegetation and carbon flux. Thus, snow depth and coverage have been key components in all the earth system models but are often poorly represented for arctic regions, where fine scale snow distribution data is sparse. The snow data currently used in the models is at coarse resolution, which in turn leads to high uncertainty in model predictions. Through the DOE Office of Science Next Generation Ecosystem Experiment, NGEE-Arctic, high resolution snow distribution data is being developed and applied in catchment scale models to ultimately improve representation of snow and its interactions with other model components in the earth system models . To improve these models, it is important to identify key factors that control snow distribution and quantify the impacts of those factors on snow distribution. In this study, two intensive snow depth surveys (1 to 10 meters scale) were conducted for a 2.3 km2 catchment on the Teller road, near Nome, AK in the winter of 2016 and 2017. We used a statistical model to quantify the impacts of vegetation types, macro-topography, micro-topography, and meteorological parameters on measured snow depth. The results show that snow spatial distribution was similar between 2016 and 2017, snow depth was spatially auto correlated over small distance (2-5 meters), but not spatially auto correlated over larger distance (more than 2-5 meters). The coefficients of variation of snow depth was above 0.3 for all the snow survey transects (500-800 meters long). Variation of snow depth is governed by vegetation height, aspect, slope, surface curvature, elevation and wind speed and direction. We expect that this empirical statistical model can be used to estimate end of winter snow depth for the whole watershed and will further develop the model using data from other arctic regions to estimate seasonally dynamic snow coverage and properties for use in catchment scale to pan-Arctic models.

Small scale denitrification variability in riparian zones: Results from a high-resolution dataset

NASA Astrophysics Data System (ADS)

Gassen, Niklas; Knöller, Kay; Musolff, Andreas; Popp, Felix; Lüders, Tillmann; Stumpp, Christine

2017-04-01

Riparian zones are important compartments at the interface between groundwater and surface water where biogeochemical processes like denitrification are often enhanced. Nitrate loads of either groundwater entering a stream through the riparian zone or streamwater infiltrating into the riparian zone can be substantially reduced. These processes are spatially and temporally highly variable, making it difficult to capture solute variabilities, estimate realistic turnover rates and thus to quantify integral mass removal. A crucial step towards a more detailed characterization is to monitor solutes on a scale which adequately resemble the highly heterogeneous distribution and on a scale where processes occur. We measured biogeochemical parameters in a spatial high resolution within a riparian corridor of a German lowland river system over the course of one year. Samples were taken from three newly developed high-resolution multi-level wells with a maximum vertical resolution of 5 cm and analyzed for major ions, DOC and N-O isotopes. Sediment derived during installation of the wells was analyzed for specific denitrifying enzymes. Results showed a distinct depth zonation of hydrochemistry within the shallow alluvial aquifer, with a 1 m thick zone just below the water table with lower nitrate concentrations and EC values similar to the nearby river. Conservative parameters were consistent inbetween the three wells, but nitrate was highly variable. In addition, spots with low nitrate concentrations showed isotopic and microbial evidence for higher denitrification activities. The depth zonation was observed throughout the year, with stronger temporal variations of nitrate concentrations just below the water table compared to deeper layers. Nitrate isotopes showed a clear seasonal trend of denitrification activities (high in summer, low in winter). Our dataset gives new insight into river-groundwater exchange processes and shows the highly heterogeneous distribution of denitrification in riparian zones, both in time and space. With these new insights, we are able to improve our understanding of spatial scaling of denitrification processes. This leads to a better prediction and improved management strategies for buffer mechanisms in riparian zones.

High Resolution Multichannel Imaging of Basin Growth Along a Continental Transform: The Marmara Sea Along the North Anatolian Fault in NW Turkey

NASA Astrophysics Data System (ADS)

Steckler, M. S.; Çifçi, G.; Demirbağ, E.; Akhun, S. D.; Büyükaşik, E.; Cevatoglu, M.; Coşkun, S.; Diebold, J.; Dondurur, D.; Gürçay, S.; Imren, C.; Kücük, H. M.; Kurt, H.; Özer, P. G.; Perinçek, E.; Seeber, L.; Shillington, D.; Sorlien, C.; Timur, D.

2008-12-01

The 1500-km-long North Anatolian continental transform (NAF) accommodates the westward motion of the Anatolian platelet relative to Asia. The Marmara Trough in western Turkey is a large composite Quaternary structure that includes three main extensional basins with water depths reaching ~1200m separated by shallower ridges. Syntectonic sedimentation in the basins with highly variable sea-level-related changes in accumulation rates provide valuable time-space markers for reconstructing structural growth and basin development in the Marmara Sea. The TAMAM (Turkish-American MArmara Multichannel) Project is a collaboration between several US and Turkish research institutes. During July 2008, TAMAM collected ~2700 km of multichannel profiles in the Marmara Sea using the R/V K. Piri Reis. MCS data were sampled with a 1-ms interval on the first 72 channels with 6.25m group spacing in a 600m streamer. The source was a 45/45 cu. in. GI air gun, which was fired every 12.5 or18.75m. The gun-streamer offset was 40 or 100 m depending on water depth. Both the gun and streamer were towed at a depth of 3 or 4m. This configuration yielded high-resolution images of the stratigraphy in the Marmara Sea. TAMAM follows a recent series of impressive seismotectonic studies of the NAF in the Marmara Sea area. Previous seismic cruises focused on deep penetration MCS imaging of the overall basin structure and faulting or very high-resolution imaging of the near-surface faulting. TAMAM fills a gap in resolution imaging the stratigraphy that records the history of deformation in the basins and linkages between faults. We will present preliminary high-resolution images of the stratigraphy and tectonics beneath the Marmara Sea highlighting the following exciting observations and initial results from this experiment: 1) Improved stratigraphic correlations between the major basins, a primary goal of the experiment; 2) Clearer imaging of active faults, including the NAF, the less studied southern branch of the NAF, the Imrali fault, and numerous smaller active faults; 3) Imaging of thrusts and thrust-related folds in parts of the basin; 4) Better constraints on variations in the dip and sense of motion (transpression vs. transtension) on the upper 1-2 km of the NAF; 5) Stratigraphic boundaries in the turbiditic sections in the deep basins that may be related to interactions between tectonics and changes in sedimentation rate driven by variations in sealevel and paleoclimate; 5) Extent of gravity slides at the edges of most of the subbasins; and 6) Imaging of a stack of lowstand deltas with a relatively even vertical spacing suggesting deposition tracking the ~100 ka late Quaternary glacial cycles.

[A snow depth inversion method for the HJ-1B satellite data].

PubMed

Dong, Ting-Xu; Jiang, Hong-Bo; Chen, Chao; Qin, Qi-Ming

2011-10-01

The importance of the snow is self-evident, while the harms caused by the snow have also received more and more attention. At present, the retrieval of snow depth mainly focused on the use of microwave remote sensing data or a small amount of optical remote sensing data, such as the meteorological data or the MODIS data. The small satellites for environment and disaster monitoring of China are quite different form the meteorological data and MODIS data, both in the spectral resolution or spatial resolution. In this paper, aimed at the HJ-1B data, snow spectral of different underlying surfaces and depths were surveyed. The correlation between snow cover index and snow depth was also analyzed to establish the model for the snow depth retrieval using the HJ-1B data. The validation results showed that it can meet the requirements of real-time monitoring the snow depth on the condition of conventional snow depth.

Localization of cortical tissue optical changes during seizure activity in vivo with optical coherence tomography

PubMed Central

Eberle, Melissa M.; Hsu, Mike S.; Rodriguez, Carissa L.; Szu, Jenny I.; Oliveira, Michael C.; Binder, Devin K.; Park, B. Hyle

2015-01-01

Optical coherence tomography (OCT) is a high resolution, minimally invasive imaging technique, which can produce depth-resolved cross-sectional images. In this study, OCT was used to detect changes in the optical properties of cortical tissue in vivo in mice during the induction of global (pentylenetetrazol) and focal (4-aminopyridine) seizures. Through the use of a confidence interval statistical method on depth-resolved volumes of attenuation coefficient, we demonstrated localization of regions exhibiting both significant positive and negative changes in attenuation coefficient, as well as differentiating between global and focal seizure propagation. PMID:26137382

Dual-mode endomicroscopy for detection of epithelial dysplasia in the mouth: a descriptive pilot study

NASA Astrophysics Data System (ADS)

Bodenschatz, Nico; Poh, Catherine F.; Lam, Sylvia; Lane, Pierre; Guillaud, Martial; MacAulay, Calum E.

2017-08-01

Dual-mode endomicroscopy is a diagnostic tool for early cancer detection. It combines the high-resolution nuclear tissue contrast of fluorescence endomicroscopy with quantified depth-dependent epithelial backscattering as obtained by diffuse optical microscopy. In an in vivo pilot imaging study of 27 oral lesions from 21 patients, we demonstrate the complementary diagnostic value of both modalities and show correlations between grade of epithelial dysplasia and relative depth-dependent shifts in light backscattering. When combined, the two modalities provide diagnostic sensitivity to both moderate and severe epithelial dysplasia in vivo.

Visible/Infrared Optical Depths of Cirrus as Seen by Satellite and Scanning Lidar

NASA Technical Reports Server (NTRS)

Wylie, Donald; Wolf, Walt; Piironen, Paivi; Eloranta, Edwin

1996-01-01

The High Spectral Resolution Lidar (HSRL) and the Volume Imaging Lidar (VIL) were combined to produce a quantitative image of the visible optical depth of cirrus clouds. The HSRL was used to calibrate the VIL signal into backscatter cross sections of particulates. The backscatter cross sections were related to extinction by a constant backscatter phase function determined from the HSRL data. This produced a three dimensional image of visual extinction in the cirrus clouds over a one hour period. Two lidar images were constructed from one hour VIL cross section records.

Confocal Imaging of porous media

NASA Astrophysics Data System (ADS)

Shah, S.; Crawshaw, D.; Boek, D.

2012-12-01

Carbonate rocks, which hold approximately 50% of the world's oil and gas reserves, have a very complicated and heterogeneous structure in comparison with sandstone reservoir rock. We present advances with different techniques to image, reconstruct, and characterize statistically the micro-geometry of carbonate pores. The main goal here is to develop a technique to obtain two dimensional and three dimensional images using Confocal Laser Scanning Microscopy. CLSM is used in epi-fluorescent imaging mode, allowing for the very high optical resolution of features well below 1μm size. Images of pore structures were captured using CLSM imaging where spaces in the carbonate samples were impregnated with a fluorescent, dyed epoxy-resin, and scanned in the x-y plane by a laser probe. We discuss the sample preparation in detail for Confocal Imaging to obtain sub-micron resolution images of heterogeneous carbonate rocks. We also discuss the technical and practical aspects of this imaging technique, including its advantages and limitation. We present several examples of this application, including studying pore geometry in carbonates, characterizing sub-resolution porosity in two dimensional images. We then describe approaches to extract statistical information about porosity using image processing and spatial correlation function. We have managed to obtain very low depth information in z -axis (~ 50μm) to develop three dimensional images of carbonate rocks with the current capabilities and limitation of CLSM technique. Hence, we have planned a novel technique to obtain higher depth information to obtain high three dimensional images with sub-micron resolution possible in the lateral and axial planes.

High-Resolution Intravital Microscopy

PubMed Central

Andresen, Volker; Pollok, Karolin; Rinnenthal, Jan-Leo; Oehme, Laura; Günther, Robert; Spiecker, Heinrich; Radbruch, Helena; Gerhard, Jenny; Sporbert, Anje; Cseresnyes, Zoltan; Hauser, Anja E.; Niesner, Raluca

2012-01-01

Cellular communication constitutes a fundamental mechanism of life, for instance by permitting transfer of information through synapses in the nervous system and by leading to activation of cells during the course of immune responses. Monitoring cell-cell interactions within living adult organisms is crucial in order to draw conclusions on their behavior with respect to the fate of cells, tissues and organs. Until now, there is no technology available that enables dynamic imaging deep within the tissue of living adult organisms at sub-cellular resolution, i.e. detection at the level of few protein molecules. Here we present a novel approach called multi-beam striped-illumination which applies for the first time the principle and advantages of structured-illumination, spatial modulation of the excitation pattern, to laser-scanning-microscopy. We use this approach in two-photon-microscopy - the most adequate optical deep-tissue imaging-technique. As compared to standard two-photon-microscopy, it achieves significant contrast enhancement and up to 3-fold improved axial resolution (optical sectioning) while photobleaching, photodamage and acquisition speed are similar. Its imaging depth is comparable to multifocal two-photon-microscopy and only slightly less than in standard single-beam two-photon-microscopy. Precisely, our studies within mouse lymph nodes demonstrated 216% improved axial and 23% improved lateral resolutions at a depth of 80 µm below the surface. Thus, we are for the first time able to visualize the dynamic interactions between B cells and immune complex deposits on follicular dendritic cells within germinal centers (GCs) of live mice. These interactions play a decisive role in the process of clonal selection, leading to affinity maturation of the humoral immune response. This novel high-resolution intravital microscopy method has a huge potential for numerous applications in neurosciences, immunology, cancer research and developmental biology. Moreover, our striped-illumination approach is able to improve the resolution of any laser-scanning-microscope, including confocal microscopes, by simply choosing an appropriate detector. PMID:23251402

Gabor domain optical coherence microscopy

NASA Astrophysics Data System (ADS)

Murali, Supraja

Time domain Optical Coherence Tomography (TD-OCT), first reported in 1991, makes use of the low temporal coherence properties of a NIR broadband laser to create depth sectioning of up to 2mm under the surface using optical interferometry and point to point scanning. Prior and ongoing work in OCT in the research community has concentrated on improving axial resolution through the development of broadband sources and speed of image acquisition through new techniques such as Spectral domain OCT (SD-OCT). In SD-OCT, an entire depth scan is acquired at once with a low numerical aperture (NA) objective lens focused at a fixed point within the sample. In this imaging geometry, a longer depth of focus is achieved at the expense of lateral resolution, which is typically limited to 10 to 20 mum. Optical Coherence Microscopy (OCM), introduced in 1994, combined the advantages of high axial resolution obtained in OCT with high lateral resolution obtained by increasing the NA of the microscope placed in the sample arm. However, OCM presented trade-offs caused by the inverse quadratic relationship between the NA and the DOF of the optics used. For applications requiring high lateral resolution, such as cancer diagnostics, several solutions have been proposed including the periodic manual re-focusing of the objective lens in the time domain as well as the spectral domain C-mode configuration in order to overcome the loss in lateral resolution outside the DOF. In this research, we report for the first time, high speed, sub-cellular imaging (lateral resolution of 2 mum) in OCM using a Gabor domain image processing algorithm with a custom designed and fabricated dynamic focus microscope interfaced to a Ti:Sa femtosecond laser centered at 800 nm within an SD-OCM configuration. It is envisioned that this technology will provide a non-invasive replacement for the current practice of multiple biopsies for skin cancer diagnosis. The research reported here presents three important advances to this technology all of which have been demonstrated in full functional hardware conceived and built during the course of this research. First, it has been demonstrated that the coherence gate created by the femtosecond laser can be coupled into a scanning optical microscope using optical design methods to include liquid lens technology that enables scanning below the surface of skin with no moving parts and at high resolution throughout a 2x2x2 mm imaging cube. Second, the integration the variable-focus liquid lens technology within a fixed-optics microscope custom optical design helped increase the working NA by an order of magnitude over the limitation imposed by the liquid lens alone. Thus, this design has enabled homogenous axial and lateral resolution at the micron-level (i.e., 2 mum) while imaging in the spectral domain, and still maintaining in vivo speeds. The latest images in biological specimens clearly demonstrate sub-cellular resolution in all dimensions throughout the imaging volume. Third, this new modality for data collection has been integrated with an automated Gabor domain image registration and fusion algorithm to provide full resolution images across the data cube in real-time. We refer to this overall OCM method as Gabor domain OCM (GD-OCM). These advantages place GD-OCM in a unique position with respect to the diagnosis of cancer, because when fully developed, it promises to enable fast and accurate screening for early symptoms that could lead to prevention. The next step for this technology is to apply it directly, in a clinical environment. This step is underway and is expected to be reported by the next generation of researchers within this group.

In vivo deep tissue fluorescence imaging of the murine small intestine and colon

NASA Astrophysics Data System (ADS)

Crosignani, Viera; Dvornikov, Alexander; Aguilar, Jose S.; Stringari, Chiara; Edwards, Roberts; Mantulin, Williams; Gratton, Enrico

2012-03-01

Recently we described a novel technical approach with enhanced fluorescence detection capabilities in two-photon microscopy that achieves deep tissue imaging, while maintaining micron resolution. This technique was applied to in vivo imaging of murine small intestine and colon. Individuals with Inflammatory Bowel Disease (IBD), commonly presenting as Crohn's disease or Ulcerative Colitis, are at increased risk for developing colorectal cancer. We have developed a Giα2 gene knock out mouse IBD model that develops colitis and colon cancer. The challenge is to study the disease in the whole animal, while maintaining high resolution imaging at millimeter depth. In the Giα2-/- mice, we have been successful in imaging Lgr5-GFP positive stem cell reporters that are found in crypts of niche structures, as well as deeper structures, in the small intestine and colon at depths greater than 1mm. In parallel with these in vivo deep tissue imaging experiments, we have also pursued autofluorescence FLIM imaging of the colon and small intestine-at more shallow depths (roughly 160μm)- on commercial two photon microscopes with excellent structural correlation (in overlapping tissue regions) between the different technologies.

Quantifying the importance of spatial resolution and other factors through global sensitivity analysis of a flood inundation model

NASA Astrophysics Data System (ADS)

Thomas Steven Savage, James; Pianosi, Francesca; Bates, Paul; Freer, Jim; Wagener, Thorsten

2016-11-01

Where high-resolution topographic data are available, modelers are faced with the decision of whether it is better to spend computational resource on resolving topography at finer resolutions or on running more simulations to account for various uncertain input factors (e.g., model parameters). In this paper we apply global sensitivity analysis to explore how influential the choice of spatial resolution is when compared to uncertainties in the Manning's friction coefficient parameters, the inflow hydrograph, and those stemming from the coarsening of topographic data used to produce Digital Elevation Models (DEMs). We apply the hydraulic model LISFLOOD-FP to produce several temporally and spatially variable model outputs that represent different aspects of flood inundation processes, including flood extent, water depth, and time of inundation. We find that the most influential input factor for flood extent predictions changes during the flood event, starting with the inflow hydrograph during the rising limb before switching to the channel friction parameter during peak flood inundation, and finally to the floodplain friction parameter during the drying phase of the flood event. Spatial resolution and uncertainty introduced by resampling topographic data to coarser resolutions are much more important for water depth predictions, which are also sensitive to different input factors spatially and temporally. Our findings indicate that the sensitivity of LISFLOOD-FP predictions is more complex than previously thought. Consequently, the input factors that modelers should prioritize will differ depending on the model output assessed, and the location and time of when and where this output is most relevant.

Deep Tissue Photoacoustic Imaging Using a Miniaturized 2-D Capacitive Micromachined Ultrasonic Transducer Array

PubMed Central

Kothapalli, Sri-Rajasekhar; Ma, Te-Jen; Vaithilingam, Srikant; Oralkan, Ömer

2014-01-01

In this paper, we demonstrate 3-D photoacoustic imaging (PAI) of light absorbing objects embedded as deep as 5 cm inside strong optically scattering phantoms using a miniaturized (4 mm × 4 mm × 500 µm), 2-D capacitive micromachined ultrasonic transducer (CMUT) array of 16 × 16 elements with a center frequency of 5.5 MHz. Two-dimensional tomographic images and 3-D volumetric images of the objects placed at different depths are presented. In addition, we studied the sensitivity of CMUT-based PAI to the concentration of indocyanine green dye at 5 cm depth inside the phantom. Under optimized experimental conditions, the objects at 5 cm depth can be imaged with SNR of about 35 dB and a spatial resolution of approximately 500 µm. Results demonstrate that CMUTs with integrated front-end amplifier circuits are an attractive choice for achieving relatively high depth sensitivity for PAI. PMID:22249594

Large depth of focus dynamic micro integral imaging for optical see-through augmented reality display using a focus-tunable lens.

PubMed

Shen, Xin; Javidi, Bahram

2018-03-01

We have developed a three-dimensional (3D) dynamic integral-imaging (InIm)-system-based optical see-through augmented reality display with enhanced depth range of a 3D augmented image. A focus-tunable lens is adopted in the 3D display unit to relay the elemental images with various positions to the micro lens array. Based on resolution priority integral imaging, multiple lenslet image planes are generated to enhance the depth range of the 3D image. The depth range is further increased by utilizing both the real and virtual 3D imaging fields. The 3D reconstructed image and the real-world scene are overlaid using an optical see-through display for augmented reality. The proposed system can significantly enhance the depth range of a 3D reconstructed image with high image quality in the micro InIm unit. This approach provides enhanced functionality for augmented information and adjusts the vergence-accommodation conflict of a traditional augmented reality display.

Improved 2-D resistivity imaging of features in covered karst terrain with arrays of implanted electrodes

NASA Astrophysics Data System (ADS)

Kiflu, H. G.; Kruse, S. E.; Harro, D.; Loke, M. H.; Wilkinson, P. B.

2013-12-01

Electrical resistivity tomography is commonly used to identify geologic features associated with sinkhole formation. In covered karst terrain, however, it can be difficult to resolve the depth to top of limestone with this method. This is due to the fact that array lengths, and hence depth of resolution, are often limited by residential or commercial lot dimensions in urban environments. Furthermore, the sediments mantling the limestone are often clay-rich and highly conductive. The resistivity method has limited sensitivity to resistive zones beneath conductive zones. This sensitivity can be improved significantly with electrodes implanted at depth in the cover sediments near the top of limestone. An array of deep electrodes is installed with direct push technology in the karst cover. When combined with a surface array in which each surface electrode is underlain by a deep electrode, the array geometry is similar to a borehole array turned on its side. This method, called the Multi-Electrode Resistivity Implant Technique (MERIT), offers the promise of significantly improved resolution of epikarst and cover collapse development zones in the overlying sediment, the limestone or at the sediment-bedrock interface in heterogeneous karst environments. With a non-traditional array design, the question of optimal array geometries arises. Optimizing array geometries is complicated by the fact that many plausible 4-electrode readings will produce negative apparent resistivity values, even in homogeneous terrain. Negative apparent resistivities cannot be used in inversions based on the logarithm of the apparent resistivity. New algorithms for seeking optimal array geometries have been developed by modifying the 'Compare R' method of Wilkinson and Loke. The optimized arrays show significantly improved resolution over basic arrays adapted from traditional 2D surface geometries. Several MERIT case study surveys have been conducted in covered karst in west-central Florida, with 28-electrode arrays with electrodes 2-5 meters apart, and the deep arrays buried at 4-8 meters depth. Ground penetrating radar surveys, SPT borings and coring data provide selected 'ground truthing'. The case studies show that inclusion of the deep electrode array permits karst features such as undulations at the top of limestone and raveling zones within surficial sediments to be imaged. These features are not accessible from surface arrays with equivalent surface footprints. The method also has better resolution at depth at the ends of the lines, where surface arrays are typically plotted with a trapezoidal truncation due to poor resolution at the lower corners of the profile.

Analysis of flood inundation in ungauged basins based on multi-source remote sensing data.

PubMed

Gao, Wei; Shen, Qiu; Zhou, Yuehua; Li, Xin

2018-02-09

Floods are among the most expensive natural hazards experienced in many places of the world and can result in heavy losses of life and economic damages. The objective of this study is to analyze flood inundation in ungauged basins by performing near-real-time detection with flood extent and depth based on multi-source remote sensing data. Via spatial distribution analysis of flood extent and depth in a time series, the inundation condition and the characteristics of flood disaster can be reflected. The results show that the multi-source remote sensing data can make up the lack of hydrological data in ungauged basins, which is helpful to reconstruct hydrological sequence; the combination of MODIS (moderate-resolution imaging spectroradiometer) surface reflectance productions and the DFO (Dartmouth Flood Observatory) flood database can achieve the macro-dynamic monitoring of the flood inundation in ungauged basins, and then the differential technique of high-resolution optical and microwave images before and after floods can be used to calculate flood extent to reflect spatial changes of inundation; the monitoring algorithm for the flood depth combining RS and GIS is simple and easy and can quickly calculate the depth with a known flood extent that is obtained from remote sensing images in ungauged basins. Relevant results can provide effective help for the disaster relief work performed by government departments.

A Deep-towed Digital Multichannel Seismic Streamer For Very High-resolution Studies Of Marine Subsurface Structures

NASA Astrophysics Data System (ADS)

Breitzke, M.; Bialas, J.; Inggas Working Group

A deep-towed digital multichannel seismic streamer and side scan sonar system has been developed to collect marine seismic data with a very high lateral in- and cross- line resolution particularly in regions of special interest for gas hydrate research. As marine seismic sources conventional air-, GI or waterguns will be shot close to the sea surface. A depressor of about 2 tons weight ensures the slightly buoyant deep-towed system to keep in depth. The streamer is a modular digital system which can be operated in water depths up to 6000 m. At this stage of development, it consists of a 50 m lead-in cable towed behind the side scan sonar fish and 26 single nodes for each channel. Each node houses a sin- gle hydrophone, low- and high-cut filter, preamplifier and 24-bit AD converter. Three special engineering nodes additionally include a pressure sensor and compass which provide information on the depth of the node and on its geographical position relative to the ship. Nodes are interchangeable and can arbitrarily be connected by cables of 1 or 6.5 m length. A minimum sample interval of 0.25 ms allows to use sufficiently high- frequency seismic sources to guarantee both a very high vertical and lateral resolution. Data are stored both underwater on a linux-based PC with 120 GB storage capacity installed in a pressure vessel mounted on the side scan sonar fish, and onboard on a PC running a data acquisition program and a DLT device. Data are transferred between underwater and onboard systems via telemetry controlled by a second linux-based PC onboard, using coaxial cable or fibre optic technology. The exact position of the side scan sonar fish is determined by the ultra-short base line (USBL) Posidonia system. It mainly consists of a hull-mounted acoustic unit (antenna) and a responder mounted on the side scan sonar fish. Additionally, the three engineering nodes measure the depth and heading of the streamer at three positions relative to the side scan sonar fish. All deep-towed and laboratory components are synchronized by DGPS time based trigger signals. This deep-towed system will first be tested during the SO162 cruise of RV Sonne (21.2. - 12.3.02) off Peru and Ecuador along profile lines where conventional multi- channel seismic reflection data have already been collected during a fomer cruise.

Deep-tissue focal fluorescence imaging with digitally time-reversed ultrasound-encoded light

PubMed Central

Wang, Ying Min; Judkewitz, Benjamin; DiMarzio, Charles A.; Yang, Changhuei

2012-01-01

Fluorescence imaging is one of the most important research tools in biomedical sciences. However, scattering of light severely impedes imaging of thick biological samples beyond the ballistic regime. Here we directly show focusing and high-resolution fluorescence imaging deep inside biological tissues by digitally time-reversing ultrasound-tagged light with high optical gain (~5×105). We confirm the presence of a time-reversed optical focus along with a diffuse background—a corollary of partial phase conjugation—and develop an approach for dynamic background cancellation. To illustrate the potential of our method, we image complex fluorescent objects and tumour microtissues at an unprecedented depth of 2.5 mm in biological tissues at a lateral resolution of 36 μm×52 μm and an axial resolution of 657 μm. Our results set the stage for a range of deep-tissue imaging applications in biomedical research and medical diagnostics. PMID:22735456

Helium Ion Microscopy (HIM) for the imaging of biological samples at sub-nanometer resolution

NASA Astrophysics Data System (ADS)

Joens, Matthew S.; Huynh, Chuong; Kasuboski, James M.; Ferranti, David; Sigal, Yury J.; Zeitvogel, Fabian; Obst, Martin; Burkhardt, Claus J.; Curran, Kevin P.; Chalasani, Sreekanth H.; Stern, Lewis A.; Goetze, Bernhard; Fitzpatrick, James A. J.

2013-12-01

Scanning Electron Microscopy (SEM) has long been the standard in imaging the sub-micrometer surface ultrastructure of both hard and soft materials. In the case of biological samples, it has provided great insights into their physical architecture. However, three of the fundamental challenges in the SEM imaging of soft materials are that of limited imaging resolution at high magnification, charging caused by the insulating properties of most biological samples and the loss of subtle surface features by heavy metal coating. These challenges have recently been overcome with the development of the Helium Ion Microscope (HIM), which boasts advances in charge reduction, minimized sample damage, high surface contrast without the need for metal coating, increased depth of field, and 5 angstrom imaging resolution. We demonstrate the advantages of HIM for imaging biological surfaces as well as compare and contrast the effects of sample preparation techniques and their consequences on sub-nanometer ultrastructure.

Helium Ion Microscopy (HIM) for the imaging of biological samples at sub-nanometer resolution.

PubMed

Joens, Matthew S; Huynh, Chuong; Kasuboski, James M; Ferranti, David; Sigal, Yury J; Zeitvogel, Fabian; Obst, Martin; Burkhardt, Claus J; Curran, Kevin P; Chalasani, Sreekanth H; Stern, Lewis A; Goetze, Bernhard; Fitzpatrick, James A J

2013-12-17

Scanning Electron Microscopy (SEM) has long been the standard in imaging the sub-micrometer surface ultrastructure of both hard and soft materials. In the case of biological samples, it has provided great insights into their physical architecture. However, three of the fundamental challenges in the SEM imaging of soft materials are that of limited imaging resolution at high magnification, charging caused by the insulating properties of most biological samples and the loss of subtle surface features by heavy metal coating. These challenges have recently been overcome with the development of the Helium Ion Microscope (HIM), which boasts advances in charge reduction, minimized sample damage, high surface contrast without the need for metal coating, increased depth of field, and 5 angstrom imaging resolution. We demonstrate the advantages of HIM for imaging biological surfaces as well as compare and contrast the effects of sample preparation techniques and their consequences on sub-nanometer ultrastructure.

Confocal detection of Rayleigh scattering for residual stress measurement in chemically tempered glass

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hödemann, S., E-mail: siim.hodemann@ut.ee; Möls, P.; Kiisk, V.

2015-12-28

A new optical method is presented for evaluation of the stress profile in chemically tempered (chemically strengthened) glass based on confocal detection of scattered laser beam. Theoretically, a lateral resolution of 0.2 μm and a depth resolution of 0.6 μm could be achieved by using a confocal microscope with high-NA immersion objective. The stress profile in the 250 μm thick surface layer of chemically tempered lithium aluminosilicate glass was measured with a high spatial resolution to illustrate the capability of the method. The confocal method is validated using transmission photoelastic and Na{sup +} ion concentration profile measurement. Compositional influence on the stress-optic coefficientmore » is calculated and discussed. Our method opens up new possibilities for three-dimensional scattered light tomography of mechanical imaging in birefringent materials.« less

Los Angeles and San Diego Margin High-Resolution Multibeam Bathymetry and Backscatter Data

USGS Publications Warehouse

Dartnell, Peter; Gardner, James V.; Mayer, Larry A.; Hughes-Clarke, John E.

2004-01-01

Summary -- The U.S. Geological Survey in cooperation with the University of New Hampshire and the University of New Brunswick mapped the nearshore regions off Los Angeles and San Diego, California using multibeam echosounders. Multibeam bathymetry and co-registered, corrected acoustic backscatter were collected in water depths ranging from about 3 to 900 m offshore Los Angeles and in water depths ranging from about 17 to 1230 m offshore San Diego. Continuous, 16-m spatial resolution, GIS ready format data of the entire Los Angeles Margin and San Diego Margin are available online as separate USGS Open-File Reports. For ongoing research, the USGS has processed sub-regions within these datasets at finer resolutions. The resolution of each sub-region was determined by the density of soundings within the region. This Open-File Report contains the finer resolution multibeam bathymetry and acoustic backscatter data that the USGS, Western Region, Coastal and Marine Geology Team has processed into GIS ready formats as of April 2004. The data are available in ArcInfo GRID and XYZ formats. See the Los Angeles or San Diego maps for the sub-region locations. These datasets in their present form were not originally intended for publication. The bathymetry and backscatter have data-collection and processing artifacts. These data are being made public to fulfill a Freedom of Information Act request. Care must be taken not to confuse artifacts with real seafloor morphology and acoustic backscatter.

Laser scanning saturated structured illumination microscopy based on phase modulation

NASA Astrophysics Data System (ADS)

Huang, Yujia; Zhu, Dazhao; Jin, Luhong; Kuang, Cuifang; Xu, Yingke; Liu, Xu

2017-08-01

Wide-field saturated structured illumination microscopy has not been widely used due to the requirement of high laser power. We propose a novel method called laser scanning saturated structured illumination microscopy (LS-SSIM), which introduces high order of harmonics frequency and greatly reduces the required laser power for SSIM imaging. To accomplish that, an excitation PSF with two peaks is generated and scanned along different directions on the sample. Raw images are recorded cumulatively by a CCD detector and then reconstructed to form a high-resolution image with extended optical transfer function (OTF). Our theoretical analysis and simulation results show that LS-SSIM method reaches a resolution of 0.16 λ, equivalent to 2.7-fold resolution than conventional wide-field microscopy. In addition, LS-SSIM greatly improves the optical sectioning capability of conventional wide-field illumination system by diminishing our-of-focus light. Furthermore, this modality has the advantage of implementation in multi-photon microscopy with point scanning excitation to image samples in greater depths.

The Panoramic Camera (PanCam) Instrument for the ESA ExoMars Rover

NASA Astrophysics Data System (ADS)

Griffiths, A.; Coates, A.; Jaumann, R.; Michaelis, H.; Paar, G.; Barnes, D.; Josset, J.

The recently approved ExoMars rover is the first element of the ESA Aurora programme and is slated to deliver the Pasteur exobiology payload to Mars by 2013. The 0.7 kg Panoramic Camera will provide multispectral stereo images with 65° field-of- view (1.1 mrad/pixel) and high resolution (85 µrad/pixel) monoscopic "zoom" images with 5° field-of-view. The stereo Wide Angle Cameras (WAC) are based on Beagle 2 Stereo Camera System heritage. The Panoramic Camera instrument is designed to fulfil the digital terrain mapping requirements of the mission as well as providing multispectral geological imaging, colour and stereo panoramic images, solar images for water vapour abundance and dust optical depth measurements and to observe retrieved subsurface samples before ingestion into the rest of the Pasteur payload. Additionally the High Resolution Camera (HRC) can be used for high resolution imaging of interesting targets detected in the WAC panoramas and of inaccessible locations on crater or valley walls.

High resolution colonoscopy in a bowel cancer screening program improves polyp detection

PubMed Central

Banks, Matthew R; Haidry, Rehan; Butt, M Adil; Whitley, Lisa; Stein, Judith; Langmead, Louise; Bloom, Stuart L; O’Bichere, Austin; McCartney, Sara; Basherdas, Kalpesh; Rodriguez-Justo, Manuel; Lovat, Laurence B

2011-01-01

AIM: To compare high resolution colonoscopy (Olympus Lucera) with a megapixel high resolution system (Pentax HiLine) as an in-service evaluation. METHODS: Polyp detection rates and measures of performance were collected for 269 colonoscopy procedures. Five colonoscopists conducted the study over a three month period, as part of the United Kingdom bowel cancer screening program. RESULTS:There were no differences in procedure duration (χ2 P = 0.98), caecal intubation rates (χ2 P = 0.67), or depth of sedation (χ2 P = 0.64). Mild discomfort was more common in the Pentax group (χ2 P = 0.036). Adenoma detection rate was significantly higher in the Pentax group (χ2 test for trend P = 0.01). Most of the extra polyps detected were flat or sessile adenomas. CONCLUSION: Megapixel definition colonoscopes improve adenoma detection without compromising other measures of endoscope performance. Increased polyp detection rates may improve future outcomes in bowel cancer screening programs. PMID:22090787

Investigation of various energy deposition kernel refinements for the convolution/superposition method

PubMed Central

Huang, Jessie Y.; Eklund, David; Childress, Nathan L.; Howell, Rebecca M.; Mirkovic, Dragan; Followill, David S.; Kry, Stephen F.

2013-01-01

Purpose: Several simplifications used in clinical implementations of the convolution/superposition (C/S) method, specifically, density scaling of water kernels for heterogeneous media and use of a single polyenergetic kernel, lead to dose calculation inaccuracies. Although these weaknesses of the C/S method are known, it is not well known which of these simplifications has the largest effect on dose calculation accuracy in clinical situations. The purpose of this study was to generate and characterize high-resolution, polyenergetic, and material-specific energy deposition kernels (EDKs), as well as to investigate the dosimetric impact of implementing spatially variant polyenergetic and material-specific kernels in a collapsed cone C/S algorithm. Methods: High-resolution, monoenergetic water EDKs and various material-specific EDKs were simulated using the EGSnrc Monte Carlo code. Polyenergetic kernels, reflecting the primary spectrum of a clinical 6 MV photon beam at different locations in a water phantom, were calculated for different depths, field sizes, and off-axis distances. To investigate the dosimetric impact of implementing spatially variant polyenergetic kernels, depth dose curves in water were calculated using two different implementations of the collapsed cone C/S method. The first method uses a single polyenergetic kernel, while the second method fully takes into account spectral changes in the convolution calculation. To investigate the dosimetric impact of implementing material-specific kernels, depth dose curves were calculated for a simplified titanium implant geometry using both a traditional C/S implementation that performs density scaling of water kernels and a novel implementation using material-specific kernels. Results: For our high-resolution kernels, we found good agreement with the Mackie et al. kernels, with some differences near the interaction site for low photon energies (<500 keV). For our spatially variant polyenergetic kernels, we found that depth was the most dominant factor affecting the pattern of energy deposition; however, the effects of field size and off-axis distance were not negligible. For the material-specific kernels, we found that as the density of the material increased, more energy was deposited laterally by charged particles, as opposed to in the forward direction. Thus, density scaling of water kernels becomes a worse approximation as the density and the effective atomic number of the material differ more from water. Implementation of spatially variant, polyenergetic kernels increased the percent depth dose value at 25 cm depth by 2.1%–5.8% depending on the field size, while implementation of titanium kernels gave 4.9% higher dose upstream of the metal cavity (i.e., higher backscatter dose) and 8.2% lower dose downstream of the cavity. Conclusions: Of the various kernel refinements investigated, inclusion of depth-dependent and metal-specific kernels into the C/S method has the greatest potential to improve dose calculation accuracy. Implementation of spatially variant polyenergetic kernels resulted in a harder depth dose curve and thus has the potential to affect beam modeling parameters obtained in the commissioning process. For metal implants, the C/S algorithms generally underestimate the dose upstream and overestimate the dose downstream of the implant. Implementation of a metal-specific kernel mitigated both of these errors. PMID:24320507

Revealing fine microstructural morphology in the living human retina using Optical Coherence Tomography with pancorrection

NASA Astrophysics Data System (ADS)

Torti, C.; Považay, B.; Hofer, B.; Unterhuber, A.; Hermann, B.; Drexler, W.

2008-09-01

Ultra-high speed optical coherence tomography employing an ultra-broadband light source has been combined with adaptive optics utilizing a single high stroke deformable mirror and chromatic aberration compensation. The reduction of motion artefacts, geometric and chromatic aberrations (pancorrection) permits to achieve an isotropic resolution of 2-3 μm in the human eye. The performance of this non-invasive imaging modality enables to resolve cellular structures including cone photoreceptors, nerve fibre bundles and collagenous plates of the lamina cribrosa, and retinal pigment epithelial (RPE) cells in the human retina in vivo with superior detail. Alterations of cellular morphology due to cone degeneration in a colour-blind subject are investigated in ultra-high resolution with selective depth sectioning for the first time.

Shallow water bathymetry correction using sea bottom classification with multispectral satellite imagery

NASA Astrophysics Data System (ADS)

Kazama, Yoriko; Yamamoto, Tomonori

2017-10-01

Bathymetry at shallow water especially shallower than 15m is an important area for environmental monitoring and national defense. Because the depth of shallow water is changeable by the sediment deposition and the ocean waves, the periodic monitoring at shoe area is needed. Utilization of satellite images are well matched for widely and repeatedly monitoring at sea area. Sea bottom terrain model using by remote sensing data have been developed and these methods based on the radiative transfer model of the sun irradiance which is affected by the atmosphere, water, and sea bottom. We adopted that general method of the sea depth extraction to the satellite imagery, WorldView-2; which has very fine spatial resolution (50cm/pix) and eight bands at visible to near-infrared wavelengths. From high-spatial resolution satellite images, there is possibility to know the coral reefs and the rock area's detail terrain model which offers important information for the amphibious landing. In addition, the WorldView-2 satellite sensor has the band at near the ultraviolet wavelength that is transmitted through the water. On the other hand, the previous study showed that the estimation error by the satellite imagery was related to the sea bottom materials such as sand, coral reef, sea alga, and rocks. Therefore, in this study, we focused on sea bottom materials, and tried to improve the depth estimation accuracy. First, we classified the sea bottom materials by the SVM method, which used the depth data acquired by multi-beam sonar as supervised data. Then correction values in the depth estimation equation were calculated applying the classification results. As a result, the classification accuracy of sea bottom materials was 93%, and the depth estimation error using the correction by the classification result was within 1.2m.

Can low-resolution airborne laser scanning data be used to model stream rating curves?

USGS Publications Warehouse

Lyon, Steve; Nathanson, Marcus; Lam, Norris; Dahlke, Helen; Rutzinger, Martin; Kean, Jason W.; Laudon, Hjalmar

2015-01-01

This pilot study explores the potential of using low-resolution (0.2 points/m2) airborne laser scanning (ALS)-derived elevation data to model stream rating curves. Rating curves, which allow the functional translation of stream water depth into discharge, making them integral to water resource monitoring efforts, were modeled using a physics-based approach that captures basic geometric measurements to establish flow resistance due to implicit channel roughness. We tested synthetically thinned high-resolution (more than 2 points/m2) ALS data as a proxy for low-resolution data at a point density equivalent to that obtained within most national-scale ALS strategies. Our results show that the errors incurred due to the effect of low-resolution versus high-resolution ALS data were less than those due to flow measurement and empirical rating curve fitting uncertainties. As such, although there likely are scale and technical limitations to consider, it is theoretically possible to generate rating curves in a river network from ALS data of the resolution anticipated within national-scale ALS schemes (at least for rivers with relatively simple geometries). This is promising, since generating rating curves from ALS scans would greatly enhance our ability to monitor streamflow by simplifying the overall effort required.

In-line three-dimensional holography of nanocrystalline objects at atomic resolution

DOE PAGES

Chen, F. -R.; Van Dyck, D.; Kisielowski, C.

2016-02-18

We report that resolution and sensitivity of the latest generation aberration-corrected transmission electron microscopes allow the vast majority of single atoms to be imaged with sub-Ångstrom resolution and their locations determined in an image plane with a precision that exceeds the 1.9-pm wavelength of 300 kV electrons. Such unprecedented performance allows expansion of electron microscopic investigations with atomic resolution into the third dimension. Here we show a general tomographic method to recover the three-dimensional shape of a crystalline particle from high-resolution images of a single projection without the need for sample rotation. The method is compatible with low dose ratemore » electron microscopy, which improves on signal quality, while minimizing electron beam-induced structure modifications even for small particles or surfaces. Lastly, we apply it to germanium, gold and magnesium oxide particles, and achieve a depth resolution of 1–2 Å, which is smaller than inter-atomic distances.« less

A New Satellite Aerosol Retrieval Using High Spectral Resolution Oxygen A-Band Measurements

NASA Astrophysics Data System (ADS)

Winker, D. M.; Zhai, P.

2014-12-01

Efforts to advance current satellite aerosol retrieval capabilities have mostly focused on polarimetric techniques. While there has been much interest in recent decades in the use of the oxygen A-band for retrievals of cloud height or surface pressure, these techniques are mostly based on A-band measurements with relatively low spectral resolution. We report here on a new aerosol retrieval technique based on high-resolution A-band spectra. Our goal is the development of a technique to retrieve aerosol absorption, one of the critical parameters affecting the global radiation budget and one which is currently poorly constrained by satellite measurements. Our approach relies on two key factors: 1) the use of high spectral resolution measurements which resolve the A-band line structure, and 2) the use of co-located lidar profile measurements to constrain the vertical distribution of scatterers. The OCO-2 satellite, launched in July this year and now flying in formation with the CALIPSO satellite, carries an oxygen A-band spectrometer with a spectral resolution of 21,000:1. This is sufficient to resolve the A-band line structure, which contains information on atmospheric photon path lengths. Combining channels with oxygen absorption ranging from weak to strong allows the separation of atmospheric and surface scattering. An optimal estimation algorithm for simultaneous retrieval of aerosol optical depth, aerosol absorption, and surface albedo has been developed. Lidar profile data is used for scene identification and to provide constraints on the vertical distribution of scatterers. As calibrated OCO-2 data is not expected until the end of this year, the algorithm has been developed and tested using simulated OCO-2 spectra. The simulations show that AOD and surface albedo can be retrieved with high accuracy. Retrievals of aerosol single scatter albedo are encouraging, showing good performance when AOD is larger than about 0.15. Retrieval performance improves as the albedo of the underlying surface increases. Thus, the technique shows great promise for retrieving the absorption optical depth of aerosols located above clouds. This presentation will discuss the basis of the approach and results of the A-band/lidar retrievals based on simulated data.

Soil Water Content Sensors as a Method of Measuring Ice Depth

NASA Astrophysics Data System (ADS)

Whitaker, E.; Reed, D. E.; Desai, A. R.

2015-12-01

Lake ice depth provides important information about local and regional climate change, weather patterns, and recreational safety, as well as impacting in situ ecology and carbon cycling. However, it is challenging to measure ice depth continuously from a remote location, as existing methods are too large, expensive, and/or time-intensive. Therefore, we present a novel application that reduces the size and cost issues by using soil water content reflectometer sensors. Analysis of sensors deployed in an environmental chamber using a scale model of a lake demonstrated their value as accurate measures of the change in ice depth over any time period, through measurement of the liquid-to-solid phase change. A robust correlation exists between volumetric water content in time as a function of environmental temperature. This relationship allows us to convert volumetric water content into ice depth. An array of these sensors will be placed in Lake Mendota, Madison, Wisconsin in winter 2015-2016, to create a temporally high-resolution ice depth record, which will be used for ecological or climatological studies while also being transmitted to the public to increase recreational safety.

Single shot, three-dimensional fluorescence microscopy with a spatially rotating point spread function

PubMed Central

Wang, Zhaojun; Cai, Yanan; Liang, Yansheng; Zhou, Xing; Yan, Shaohui; Dan, Dan; Bianco, Piero R.; Lei, Ming; Yao, Baoli

2017-01-01

A wide-field fluorescence microscope with a double-helix point spread function (PSF) is constructed to obtain the specimen’s three-dimensional distribution with a single snapshot. Spiral-phase-based computer-generated holograms (CGHs) are adopted to make the depth-of-field of the microscope adjustable. The impact of system aberrations on the double-helix PSF at high numerical aperture is analyzed to reveal the necessity of the aberration correction. A modified cepstrum-based reconstruction scheme is promoted in accordance with properties of the new double-helix PSF. The extended depth-of-field images and the corresponding depth maps for both a simulated sample and a tilted section slice of bovine pulmonary artery endothelial (BPAE) cells are recovered, respectively, verifying that the depth-of-field is properly extended and the depth of the specimen can be estimated at a precision of 23.4nm. This three-dimensional fluorescence microscope with a framerate-rank time resolution is suitable for studying the fast developing process of thin and sparsely distributed micron-scale cells in extended depth-of-field. PMID:29296483

Next-Generation Molecular Histology Using Highly Multiplexed Ion Beam Imaging (MIBI) of Breast Cancer Tissue Specimens for Enhanced Clinical Guidance

DTIC Science & Technology

2015-07-01

describe: 1) major activities ; 2) specific objectives; 3) significant results or key outcomes, including major findings, developments, or conclusions...project progresses to completion, the emphasis in reporting in this section should shift from reporting activities to reporting accomplishments. B...high-resolution axial (depth) imaging as well. Of course, both techniques are under active development, and their properties may change sub

Epitaxy of GaN in high aspect ratio nanoscale holes over silicon substrate

NASA Astrophysics Data System (ADS)

Wang, Kejia; Wang, Anqi; Ji, Qingbin; Hu, Xiaodong; Xie, Yahong; Sun, Ying; Cheng, Zhiyuan

2017-12-01

Dislocation filtering in gallium nitride (GaN) by epitaxial growth through patterned nanoscale holes is studied. GaN grown from extremely high aspect ratio holes by metalorganic chemical vapor deposition is examined by transmission electron microscopy and high-resolution transmission electron microscopy. This selective area epitaxial growth method with a reduced epitaxy area and an increased depth to width ratio of holes leads to effective filtering of dislocations within the hole and improves the quality of GaN significantly.

High resolution microscopy of the lipid layer of the tear film.

PubMed

King-Smith, P Ewen; Nichols, Jason J; Braun, Richard J; Nichols, Kelly K

2011-10-01

Tear film evaporation is controlled by the lipid layer and is an important factor in dry eye conditions. Because the barrier to evaporation depends on the structure of the lipid layer, a high resolution microscope has been constructed to study the lipid layer in dry and in normal eyes. The microscope incorporates the following features. First, a long working distance microscope objective is used with a high numerical aperture and resolution. Second, because such a high resolution objective has limited depth of focus, 2000 images are recorded with a video camera over a 20-sec period, with the expectation that some images will be in focus. Third, illumination is from a stroboscopic light source having a brief flash duration, to avoid blurring from movement of the lipid layer. Fourth, the image is in focus when the edge of the image is sharp - this feature is used to select images in good focus. Fifth, an aid is included to help align the cornea at normal incidence to the axis of the objective so that the whole lipid image can be in focus. High resolution microscopy has the potential to elucidate several characteristics of the normal and abnormal lipid layer, including different objects and backgrounds, changes in the blink cycle, stability and fluidity, dewetting, gel-like properties and possible relation to lipid domains. It is expected that high resolution microscopy of the lipid layer will provide information about the mechanisms of dry eye disorders. Illustrative results are presented, derived from over 10,000 images from 375 subjects.

Volumetric HiLo microscopy employing an electrically tunable lens.

PubMed

Philipp, Katrin; Smolarski, André; Koukourakis, Nektarios; Fischer, Andreas; Stürmer, Moritz; Wallrabe, Ulrike; Czarske, Jürgen W

2016-06-27

Electrically tunable lenses exhibit strong potential for fast motion-free axial scanning in a variety of microscopes. However, they also lead to a degradation of the achievable resolution because of aberrations and misalignment between illumination and detection optics that are induced by the scan itself. Additionally, the typically nonlinear relation between actuation voltage and axial displacement leads to over- or under-sampled frame acquisition in most microscopic techniques because of their static depth-of-field. To overcome these limitations, we present an Adaptive-Lens-High-and-Low-frequency (AL-HiLo) microscope that enables volumetric measurements employing an electrically tunable lens. By using speckle-patterned illumination, we ensure stability against aberrations of the electrically tunable lens. Its depth-of-field can be adjusted a-posteriori and hence enables to create flexible scans, which compensates for irregular axial measurement positions. The adaptive HiLo microscope provides an axial scanning range of 1 mm with an axial resolution of about 4 μm and sub-micron lateral resolution over the full scanning range. Proof of concept measurements at home-built specimens as well as zebrafish embryos with reporter gene-driven fluorescence in the thyroid gland are shown.

High-spatial-resolution sub-surface imaging using a laser-based acoustic microscopy technique.

PubMed

Balogun, Oluwaseyi; Cole, Garrett D; Huber, Robert; Chinn, Diane; Murray, Todd W; Spicer, James B

2011-01-01

Scanning acoustic microscopy techniques operating at frequencies in the gigahertz range are suitable for the elastic characterization and interior imaging of solid media with micrometer-scale spatial resolution. Acoustic wave propagation at these frequencies is strongly limited by energy losses, particularly from attenuation in the coupling media used to transmit ultrasound to a specimen, leading to a decrease in the depth in a specimen that can be interrogated. In this work, a laser-based acoustic microscopy technique is presented that uses a pulsed laser source for the generation of broadband acoustic waves and an optical interferometer for detection. The use of a 900-ps microchip pulsed laser facilitates the generation of acoustic waves with frequencies extending up to 1 GHz which allows for the resolution of micrometer-scale features in a specimen. Furthermore, the combination of optical generation and detection approaches eliminates the use of an ultrasonic coupling medium, and allows for elastic characterization and interior imaging at penetration depths on the order of several hundred micrometers. Experimental results illustrating the use of the laser-based acoustic microscopy technique for imaging micrometer-scale subsurface geometrical features in a 70-μm-thick single-crystal silicon wafer with a (100) orientation are presented.

Development of high resolution phoswich depth-of-interaction block detectors utilizing Mg co-doped new scintillators

NASA Astrophysics Data System (ADS)

Kobayashi, Takahiro; Yamamoto, Seiichi; Yeom, Jung-Yeol; Kamada, Kei; Yoshikawa, Akira

2017-12-01

To correct for parallax error in positron emission tomography (PET), phoswich depth-of-interaction (DOI) detector using multiple scintillators with different decay times is a practical approach. However not many scintillator combinations suitable for phoswich DOI detector have been reported. Ce doped Gd3Ga3Al2O12 (GFAG) is a newly developed promising scintillator for PET detector, which has high density, high light output, appropriate light emission wavelength for silicon-photomultiplier (Si-PM) and faster decay time than that of Ce doped Gd3Al2Ga3O12 (GAGG). In this study, we developed a Si-PM based phoswich DOI block detector of GFAG with GAGG crystal arrays and evaluated its performance. We assembled a GFAG block and a GAGG block and they were optically coupled in depth direction to form a phoswich detector block. The phoswich block was optically coupled to a Si-PM array with a 1 mm thick light guide. The sizes of the GFAG and GAGG pixels were 0.9 mm x 0.9 mm x 7.5 mm and they were arranged into 24 x 24 matrix with 0.1 mm thick BaSO4 as reflector. We conducted the performance evaluation for two types of configurations; GFAG block arranged in upper layer (GFAG/GAGG) and GAGG arranged in upper layer (GAGG/GFAG). The measured two dimensional position histograms of these block detectors showed good separation and pulse shape spectra produced two distinct peaks for both configurations although some difference in energy spectra were observed. These results indicate phoswich block detectors composed of GFAG and GAGG are promising for high resolution DOI PET systems.

Distributed Temperature Sensing of hyporheic flux patterns in varied space and time around beaver dams

NASA Astrophysics Data System (ADS)

Briggs, M.; Lautz, L. K.; McKenzie, J. M.

2010-12-01

Small dams enhance hyporheic interaction by creating punctuated head differentials along streams, thereby affecting redox conditions and nutrient cycling in the streambed. As beaver populations return, they create dams that alter hyporheic flowpaths locally, an effect which may integrate at the reach scale to produce a net hydrological and ecological functional change. Streambed heterogeneity around beaver dams combines with varied morphology, head differentials and stream velocities to create patterns of hyporheic seepage flux that vary in both space and time. Heat has been used as a groundwater tracer for many years, but it’s dependence on spatially disperse point measurements has only recently been resolved by the development of Distributed Temperature Sensing (DTS) fiber-optic technology. Modified applications of DTS include wrapping the fiber around a mandrel to increase spatial resolution dramatically. Wrapped configurations can be installed vertically in the streambed to provide data for heat transport modeling of vertical hyporheic flux. The vertically continuous dataset generated with DTS may be more informative regarding subsurface heterogeneity than more commonly used spatially discrete thermocouples. We installed a total of nine wrapped DTS rods with 1.4 cm vertical spatial resolution above two beaver dams in Cherry Creek, a tributary of the Little Popo Agie River in Lander, Wyoming, USA. Data was collected over 20 min periods in dual-ended mode continuously for one month (10-Jul to 10-Aug 2010) during baseflow recession, as discharge dropped from 384 Ls-1 to 211 Ls-1. The temperature rods were installed to at least 0.75 m depth within bed sediments at varied distances upstream of the dams in diverse stream morphological units, which ranged from gravel bars to clay lined pools. Diurnal fluctuations in stream temperature were generally between 4.5 and 5.5 oC in amplitude, imparting a strong potential signal for propagation into the bed due to advective hyporheic flux. In many locations monthly temperature standard deviations at the 10 cm depth were larger than that of the overlying stream water, indicating direct heating of the streambed by solar radiation was an important process, even in that high velocity system. The high-resolution temperature records revealed local heterogeneity in the streambed at each rod and indicated the largest hyporheic flux was within gravel bars close to the dams. The smallest flux was through a gravel bar farther upstream of the dam, and through the deepest portions of pools closer to the dam. High flux regions had monthly temperature standard deviations close to that of the stream (1.5 oC) at shallow depths, while shallow sediments in pools had much more muted temperature oscillations. At 0.5 m depth, all rods had similar, smaller temperature standard deviations, ranging from 0.64-0.80 oC. The extensive and spatially continuous data set generated using DTS allowed us to determine hyporheic flux patterns for virtually any depth and time along the high-resolution temperature rods, a crucial step for understanding transient patterns in biogeochemical processing around beaver dams.

In need of combined topography and bathymetry DEM

NASA Astrophysics Data System (ADS)

Kisimoto, K.; Hilde, T.

2003-04-01

In many geoscience applications, digital elevation models (DEMs) are now more commonly used at different scales and greater resolution due to the great advancement in computer technology. Increasing the accuracy/resolution of the model and the coverage of the terrain (global model) has been the goal of users as mapping technology has improved and computers get faster and cheaper. The ETOPO5 (5 arc minutes spatial resolution land and seafloor model), initially developed in 1988 by Margo Edwards, then at Washington University, St. Louis, MO, has been the only global terrain model for a long time, and it is now being replaced by three new topographic and bathymetric DEMs, i.e.; the ETOPO2 (2 arc minutes spatial resolution land and seafloor model), the GTOPO30 land model with a spatial resolution of 30 arc seconds (c.a. 1km at equator) and the 'GEBCO 1-MINUTE GLOBAL BATHYMETRIC GRID' ocean floor model with a spatial resolution of 1 arc minute (c.a. 2 km at equator). These DEMs are products of projects through which compilation and reprocessing of existing and/or new datasets were made to meet user's new requirements. These ongoing efforts are valuable and support should be continued to refine and update these DEMs. On the other hand, a different approach to create a global bathymetric (seafloor) database exists. A method to estimate the seafloor topography from satellite altimetry combined with existing ships' conventional sounding data was devised and a beautiful global seafloor database created and made public by W.H. Smith and D.T. Sandwell in 1997. The big advantage of this database is the uniformity of coverage, i.e. there is no large area where depths are missing. It has a spatial resolution of 2 arc minute. Another important effort is found in making regional, not global, seafloor databases with much finer resolutions in many countries. The Japan Hydrographic Department has compiled and released a 500m-grid topography database around Japan, J-EGG500, in 1999. Although the coverage of this database is only a small portion of the Earth, the database has been highly appreciated in the academic community, and accepted in surprise by the general public when the database was displayed in 3D imagery to show its quality. This database could be rather smoothly combined with the finer land DEM of 250m spatial resolution (Japan250m.grd, K. Kisimoto, 2000). One of the most important applications of this combined DEM of topography and bathymetry is tsunami modeling. Understanding of the coastal environment, management and development of the coastal region are other fields in need of these data. There is, however, an important issue to consider when we create a combined DEM of topography and bathymetry in finer resolutions. The problem arises from the discrepancy of the standard datum planes or reference levels used for topographic leveling and bathymetric sounding. Land topography (altitude) is defined by leveling from the single reference point determined by average mean sea level, in other words, land height is measured from the geoid. On the other hand, depth charts are made based on depth measured from locally determined reference sea surface level, and this value of sea surface level is taken from the long term average of the lowest tidal height. So, to create a combined DEM of topography and bathymetry in very fine scale, we need to avoid this inconsistency between height and depth across the coastal region. Height and depth should be physically continuous relative to a single reference datum across the coast within such new high resolution DEMs. (N.B. Coast line is not equal to 'altitude-zero line' nor 'depth-zero line'. It is defined locally as the long term average of the highest tide level.) All of this said, we still need a lot of work on the ocean side. Global coverage with detailed bathymetric mapping is still poor. Seafloor imaging and other geophysical measurements/experiments should be organized and conducted internationally and interdisciplinary ways more than ever. We always need greater technological advancement and application of this technology in marine sciences, and more enthusiastic minds of seagoing researchers as well. Recent seafloor mapping technology/quality both in bathymetry and imagery is very promising and even favorably compared with the terrain mapping. We discuss and present on recent achievement and needs on the seafloor mapping using several most up-to-date global- and regional- DEMs available for science community at the poster session.

Large-extent digital soil mapping approaches for total soil depth

NASA Astrophysics Data System (ADS)

Mulder, Titia; Lacoste, Marine; Saby, Nicolas P. A.; Arrouays, Dominique

2015-04-01

Total soil depth (SDt) plays a key role in supporting various ecosystem services and properties, including plant growth, water availability and carbon stocks. Therefore, predictive mapping of SDt has been included as one of the deliverables within the GlobalSoilMap project. In this work SDt was predicted for France following the directions of GlobalSoilMap, which requires modelling at 90m resolution. This first method, further referred to as DM, consisted of modelling the deterministic trend in SDt using data mining, followed by a bias correction and ordinary kriging of the residuals. Considering the total surface area of France, being about 540K km2, employed methods may need to be able dealing with large data sets. Therefore, a second method, multi-resolution kriging (MrK) for large datasets, was implemented. This method consisted of modelling the deterministic trend by a linear model, followed by interpolation of the residuals. For the two methods, the general trend was assumed to be explained by the biotic and abiotic environmental conditions, as described by the Soil-Landscape paradigm. The mapping accuracy was evaluated by an internal validation and its concordance with previous soil maps. In addition, the prediction interval for DM and the confidence interval for MrK were determined. Finally, the opportunities and limitations of both approaches were evaluated. The results showed consistency in mapped spatial patterns and a good prediction of the mean values. DM was better capable in predicting extreme values due to the bias correction. Also, DM was more powerful in capturing the deterministic trend than the linear model of the MrK approach. However, MrK was found to be more straightforward and flexible in delivering spatial explicit uncertainty measures. The validation indicated that DM was more accurate than MrK. Improvements for DM may be expected by predicting soil depth classes. MrK shows potential for modelling beyond the country level, at high resolution. Large-extent digital soil mapping approaches for SDt may be improved by (1) taking into account SDt observations which are censored and (2) using high-resolution biotic and abiotic environmental data. The latter may improve modelling the soil-landscape interactions influencing soil pedogenesis. Concluding, this work provided a robust and reproducible method (DM) for high-resolution soil property modelling, in accordance with the GlobalSoilMap requirements and an efficient alternative for large-extent digital soil mapping (MrK).

Evaluating the relationship between topography and groundwater using outputs from a continental-scale integrated hydrology model

NASA Astrophysics Data System (ADS)

Condon, Laura E.; Maxwell, Reed M.

2015-08-01

We study the influence of topography on groundwater fluxes and water table depths across the contiguous United States (CONUS). Groundwater tables are often conceptualized as subdued replicas of topography. While it is well known that groundwater configuration is also controlled by geology and climate, nonlinear interactions between these drivers within large real-world systems are not well understood and are difficult to characterize given sparse groundwater observations. We address this limitation using the fully integrated physical hydrology model ParFlow to directly simulate groundwater fluxes and water table depths within a complex heterogeneous domain that incorporates all three primary groundwater drivers. Analysis is based on a first of its kind, continental-scale, high-resolution (1 km), groundwater-surface water simulation spanning more than 6.3 million km2. Results show that groundwater fluxes are most strongly driven by topographic gradients (as opposed to gradients in pressure head) in humid regions with small topographic gradients or low conductivity. These regions are generally consistent with the topographically controlled groundwater regions identified in previous studies. However, we also show that areas where topographic slopes drive groundwater flux do not generally have strong correlations between water table depth and elevation. Nonlinear relationships between topography and water table depth are consistent with groundwater flow systems that are dominated by local convergence and could also be influenced by local variability in geology and climate. One of the strengths of the numerical modeling approach is its ability to evaluate continental-scale groundwater behavior at a high resolution not possible with other techniques. This article was corrected on 11 SEP 2015. See the end of the full text for details.

Measurement of pO2 and pH in Living Breast Tumor Models with Three-Dimensional Resolution by Multiphoton Microscopy during Combined Therapy with Herceptin

DTIC Science & Technology

2007-04-01

contact with a freshly spin-coated NC–titania pre- polymer , which was transferred to a hot plate to initiate polymerization . The pattern of the PDMS stamp...to quantify pO2 and pH in vivo with high three-dimensional resolution (~1 µm3) and significant depth penetration (up to 400 µm) with MPLSM. The...proposed to develop techniques for measuring in vivo pO2 and pH of HER2-positive and negative primary tumors in murine models of breast cancer using

Functional imaging and assessment of the glucose diffusion rate in epithelial tissues in optical coherence tomography

NASA Astrophysics Data System (ADS)

Larin, K. V.; Tuchin, V. V.

2008-06-01

Functional imaging, monitoring and quantitative description of glucose diffusion in epithelial and underlying stromal tissues in vivo and controlling of the optical properties of tissues are extremely important for many biomedical applications including the development of noninvasive or minimally invasive glucose sensors as well as for therapy and diagnostics of various diseases, such as cancer, diabetic retinopathy, and glaucoma. Recent progress in the development of a noninvasive molecular diffusion biosensor based on optical coherence tomography (OCT) is described. The diffusion of glucose was studied in several epithelial tissues both in vitro and in vivo. Because OCT provides depth-resolved imaging of tissues with high in-depth resolution, the glucose diffusion is described not only as a function of time but also as a function of depth.

Seafloor Mapping: We've Come a Long Way - But Still Have Far to Go……

NASA Astrophysics Data System (ADS)

Mayer, L. A.

2017-12-01

Our ability to map the seafloor has changed radically over the past century. For thousands of years a weight at the end of a rope (or wire) - a lead line - provided the only means to measure depth. By the end of the Second World War, single beam echo sounders had been perfected to the extent that they became common on oceanographic and other vessels providing more rapid but laterally averaged (typically over a distance commensurate with the water depth) measurements of seafloor depths. Towards the end of the 20th Century - two great advances were made in seafloor mapping - the development of techniques to use satellite altimetry to predict seafloor bathymetry and the evolution of multibeam sonar technology from classified military applications to the academic and commercial communities. Satellite-altimetry derived bathymetry provides an unprecedented view of seafloor topography and tremendous insight into tectonic-scale processes but is limited in achievable resolution. Multibeam sonars offer the potential of extremely high-resolution (a function of array size, beam footprint, and water depth), but are typically deployed from manned surface vessels that cover limited amount of seafloor at a relatively high daily cost. We have the technology to map the entire world ocean with multibeam sonar but It has been estimated that to map the world ocean deeper than about 150m (shallow water is very time-consuming and expensive because the coverage swath width is typically 3-5 times water) would take approximately 200 ship years and cost on the order of 3 billion dollars. We have demonstrated our willingness to spend billions to map other planets (e.g. Mars and the Moon) but for some reason, not our own. Recently, however, there has been growing momentum to see the entire world ocean mapped. The Nippon Foundation and GEBCO have recently announced the Seabed 2030 project with a goal of facilitating the mapping of the world ocean by 2030 and international agreements like The Galway Statement on Atlantic Cooperation are coordinating international efforts to see large portions of the seafloor mapped. Coupled with these international efforts, new technologies like autonomous mapping barges or large-scale multibeam sonar equipped Saildrones may greatly reduce costs and make the dream of mapping the world ocean at high-resolution a reality.

Resistivity structure of the Furnas hydrothermal system (Azores archipelago, Portugal) from AMT and ERT imaging.

NASA Astrophysics Data System (ADS)

Byrdina, Svetlana; Vandemeulebrouck, Jean; Rath, Volker; Silva, Catarina; Hogg, Colin; Kiyan, Duygu; Viveiros, Fatima; Eleuterio, Joana; Gresse, Marceau

2016-04-01

The Furnas volcanic complex is located in the eastern part of the São Miguel Island and comprises a 5 km × 8 km summit depression filled by two nested calderas with several craters and a lake. Present-day volcanic activity of Furnas volcano is mostly located in the northern part of the caldera, within the Furnas village and north to Furnas Lake, where hydrothermal manifestations are mainly fumarolic fields, steam vents, thermal springs, and intense soil diffuse degassing. Considering the Furnas volcano as a whole, the total integrated CO2 efflux is extremely high, with a total amount of CO2 close to 1000 ton per day (Viveiros et al., 2009). We present the first results of an electrical resistivity tomography (ERT), combined with audio-magneto-telluric (AMT) measurements aligned along two profiles inside the caldera. The purpose of this survey is to delimit the extent, the geometry, and the depth of the hydrothermal system and to correlate the deep resistivity structure with high resolution cartography of diffuse CO2 flux (Viveiros et al, 2015). The ERT and AMT methods are complementary in terms of resolution and penetration depth: ERT can image the structural details of shallow hydrothermal system (down to 100 m in our study) while AMT can image at lower resolution deeper structures at the roots of a volcano (down to 4 km in our study). Our first independent 2D inversions of the ERT-AMT data show a good agreement between the surficial and deeper features. Below the main fumarole area we observe a low resistivity body (less than 1 Ohmm) which corresponds well to the high CO2 flux at the surface and is associated with an extended conductive body at larger depth. These results strongly suggest the presence of hydrothermal waters at depth or/and the presence of altered clay-rich material. On a larger scale however, the geometry of the conducting zones differs slightly from what was expected from earlier surface studies, and may not be directly related to fault zones mapped at the surface. These slight, but measurable discrepancies might have different origins but they stress the necessity of 3D modelling and the importance of the joint inversion of the data which we consider as a next step in our work.

SRF niobium characterization using SIMS and FIB-TEM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stevie, F. A.

2015-12-04

Our understanding of superconducting radio frequency (SRF) accelerator cavities has been improved by elemental analysis at high depth resolution and by high magnification microscopy. This paper summarizes the technique development and the results obtained on poly-crystalline, large grain, and single crystal SRF niobium. Focused ion beam made possible sample preparation using transmission electron microscopy and the images obtained showed a very uniform oxide layer for all samples analyzed. Secondary ion mass spectrometry indicated the presence of a high concentration of hydrogen and the hydrogen content exhibited a relationship with improvement in performance. Depth profiles of carbon, nitrogen, and oxygen didmore » not show major differences with heat treatment. Niobium oxide less than 10 nm thick was shown to be an effective hydrogen barrier. Niobium with titanium contamination showed unexpected performance improvement.« less

Quantifying the accuracy of snow water equivalent estimates using broadband radar signal phase

NASA Astrophysics Data System (ADS)

Deeb, E. J.; Marshall, H. P.; Lamie, N. J.; Arcone, S. A.

2014-12-01

Radar wave velocity in dry snow depends solely on density. Consequently, ground-based pulsed systems can be used to accurately measure snow depth and snow water equivalent (SWE) using signal travel-time, along with manual depth-probing for signal velocity calibration. Travel-time measurements require a large bandwidth pulse not possible in airborne/space-borne platforms. In addition, radar backscatter from snow cover is sensitive to grain size and to a lesser extent roughness of layers at current/proposed satellite-based frequencies (~ 8 - 18 GHz), complicating inversion for SWE. Therefore, accurate retrievals of SWE still require local calibration due to this sensitivity to microstructure and layering. Conversely, satellite radar interferometry, which senses the difference in signal phase between acquisitions, has shown a potential relationship with SWE at lower frequencies (~ 1 - 5 GHz) because the phase of the snow-refracted signal is sensitive to depth and dielectric properties of the snowpack, as opposed to its microstructure and stratigraphy. We have constructed a lab-based, experimental test bed to quantify the change in radar phase over a wide range of frequencies for varying depths of dry quartz sand, a material dielectrically similar to dry snow. We use a laboratory grade Vector Network Analyzer (0.01 - 25.6 GHz) and a pair of antennae mounted on a trolley over the test bed to measure amplitude and phase repeatedly/accurately at many frequencies. Using ground-based LiDAR instrumentation, we collect a coordinated high-resolution digital surface model (DSM) of the test bed and subsequent depth surfaces with which to compare the radar record of changes in phase. Our plans to transition this methodology to a field deployment during winter 2014-2015 using precision pan/tilt instrumentation will also be presented, as well as applications to airborne and space-borne platforms toward the estimation of SWE at high spatial resolution (on the order of meters) over large regions (> 100 square kilometers).

High-resolution DEM Effects on Geophysical Flow Models

NASA Astrophysics Data System (ADS)

Williams, M. R.; Bursik, M. I.; Stefanescu, R. E. R.; Patra, A. K.

2014-12-01

Geophysical mass flow models are numerical models that approximate pyroclastic flow events and can be used to assess the volcanic hazards certain areas may face. One such model, TITAN2D, approximates granular-flow physics based on a depth-averaged analytical model using inputs of basal and internal friction, material volume at a coordinate point, and a GIS in the form of a digital elevation model (DEM). The volume of modeled material propagates over the DEM in a way that is governed by the slope and curvature of the DEM surface and the basal and internal friction angles. Results from TITAN2D are highly dependent upon the inputs to the model. Here we focus on a single input: the DEM, which can vary in resolution. High resolution DEMs are advantageous in that they contain more surface details than lower-resolution models, presumably allowing modeled flows to propagate in a way more true to the real surface. However, very high resolution DEMs can create undesirable artifacts in the slope and curvature that corrupt flow calculations. With high-resolution DEMs becoming more widely available and preferable for use, determining the point at which high resolution data is less advantageous compared to lower resolution data becomes important. We find that in cases of high resolution, integer-valued DEMs, very high-resolution is detrimental to good model outputs when moderate-to-low (<10-15°) slope angles are involved. At these slope angles, multiple adjacent DEM cell elevation values are equal due to the need for the DEM to approximate the low slope with a limited set of integer values for elevation. The first derivative of the elevation surface thus becomes zero. In these cases, flow propagation is inhibited by these spurious zero-slope conditions. Here we present evidence for this "terracing effect" from 1) a mathematically defined simulated elevation model, to demonstrate the terracing effects of integer valued data, and 2) a real-world DEM where terracing must be addressed. We discuss the effect on the flow model output and present possible solutions for rectification of the problem.

Very High Resolution Bathymetric Mapping at the Ridge 2000 Integrated Study Sites: Acquisition and Processing Protocols Developed During Recent Alvin Field Programs to the East Pacific Rise and Juan de Fuca Ridge

NASA Astrophysics Data System (ADS)

Ferrini, V.; Fornari, D. J.; Shank, T.; Tivey, M.; Kelley, D. S.; Glickson, D.; Carbotte, S. M.; Howland, J.; Whitcomb, L. L.; Yoerger, D.

2004-12-01

Recent field programs at the East Pacific Rise and Juan de Fuca Ridge have resulted in the refinement of data processing protocols that enable the rapid creation of high-resolution (meter-scale) bathymetric maps from pencil-beam altimetric sonar data that are routinely collected during DSV Alvin dives. With the development of the appropriate processing tools, the Imagenex sonar, a permanent sensor on Alvin, can be used by a broad range of scientists permitting the analysis of various data sets within the context of high-quality bathymetric maps. The data processing protocol integrates depth data recorded with Alvin's Paroscientific pressure sensor with bathymetric soundings collected with an Imagenex 675 kHz articulating (scanning) sonar system, and high-resolution navigational data acquired with DVLNAV, which includes bottom lock Doppler sonar and long baseline (LBL) navigation. Together these data allow us, for the first time, to visualize portions of Ridge 2000 Integrated Study Sites (ISS) at 1-m vertical and horizontal resolution. These maps resolve morphological details of structures within the summit trough at scales that are relevant to biological communities (e.g. hydrothermal vents, lava pillars, trough walls), thus providing the important geologic context necessary to better understand spatial patterns associated with integrated biological-hydrothermal-geological processes. The Imagenex sonar is also a permanent sensor on the Jason2 ROV, which is also equipped with an SM2000 (200 kHz) near-bottom multibeam sonar. In the future, it is envisioned that near-bottom multibeam sonars will be standard sensors on all National Deep Submergence Facility (NDSF) vehicles. Streamlining data processing protocols makes these datasets more accessible to NDSF users and ensures broad compatibility between data formats among NDSF vehicle systems and allied vehicles (e.g. ABE). Establishing data processing protocols and software suites, routinely calibrating sensors (e.g. Paroscientific depth sensors), and ensuring good navigational benchmarks between various cruises to the Ridge 2000 ISS improves the capability and quality of rapidly produced high-resolution bathymetric maps enabling users to optimize their diving programs. This is especially important within the context of augmenting high-resolution bathymetric data collection in ISS areas (several cruises to the same area over multiple years) and investigating possible changes in seafloor topography, hydrothermal vent features and/or biological communities that are related to tectonic or volcanic events.

Whole mouse cryo-imaging

NASA Astrophysics Data System (ADS)

Wilson, David; Roy, Debashish; Steyer, Grant; Gargesha, Madhusudhana; Stone, Meredith; McKinley, Eliot

2008-03-01

The Case cryo-imaging system is a section and image system which allows one to acquire micron-scale, information rich, whole mouse color bright field and molecular fluorescence images of an entire mouse. Cryo-imaging is used in a variety of applications, including mouse and embryo anatomical phenotyping, drug delivery, imaging agents, metastastic cancer, stem cells, and very high resolution vascular imaging, among many. Cryo-imaging fills the gap between whole animal in vivo imaging and histology, allowing one to image a mouse along the continuum from the mouse -> organ -> tissue structure -> cell -> sub-cellular domains. In this overview, we describe the technology and a variety of exciting applications. Enhancements to the system now enable tiled acquisition of high resolution images to cover an entire mouse. High resolution fluorescence imaging, aided by a novel subtraction processing algorithm to remove sub-surface fluorescence, makes it possible to detect fluorescently-labeled single cells. Multi-modality experiments in Magnetic Resonance Imaging and Cryo-imaging of a whole mouse demonstrate superior resolution of cryo-images and efficiency of registration techniques. The 3D results demonstrate the novel true-color volume visualization tools we have developed and the inherent advantage of cryo-imaging in providing unlimited depth of field and spatial resolution. The recent results continue to demonstrate the value cryo-imaging provides in the field of small animal imaging research.

New technological developments provide deep-sea sediment density flow insights: the Monterey Coordinated Canyon Experiment

NASA Astrophysics Data System (ADS)

O'Reilly, T. C.; Kieft, B.; Chaffey, M. R.; Wolfson-Schwehr, M.; Herlien, R.; Bird, L.; Klimov, D.; Paull, C. K.; Gwiazda, R.; Lundsten, E. M.; Anderson, K.; Caress, D. W.; Sumner, E. J.; Simmons, S.; Parsons, D. R.; Talling, P.; Rosenberger, K. J.; Xu, J.; Maier, K. L.; Gales, J. A.

2017-12-01

The Monterey Coordinated Canyon Experiment (CCE) deployed an array of instruments along the Monterey Canyon floor to characterize the structure, velocity and frequency of sediment flows. CCE utilized novel technologies developed at MBARI to capture sediment flow data in unprecedented detail. 1. The Seafloor Instrument Node (SIN) at 1850 meters depth housed 3 ADCPs at 3 different frequencies, CTD, current meter, oxygen optode, fluorometer/backscatter sensor, and logged data at 10 second intervals or faster. The SIN included an acoustic modem for communication with shore through a Wave Glider relay, and provided high-resolution measurements of three flow events during three successive deployments over 1.5 years. 2. Beachball-sized Benthic Event Detectors (BEDs) were deployed on or under the seafloor to measure the characteristics of sediment density flows. Each BED recorded data from a pressure sensor and a 3-axis accelerometer and gyro to characterize motions during transport events (e.g. tumble vs rotation). An acoustic modem capable of operating through more than a meter of sediment enabled communications with a ship or autonomous surface vehicle. Multiple BEDs were deployed at various depths in the canyon during CCE, detecting and measuring many transport events; one BED moved 9 km down canyon in 50 minutes during one event. 3. Wave Glider Hot Spot (HS), equipped with acoustic and RF modems, acted as data relay between SIN, BEDs and shore, and acoustically located BEDs after sediment density flows.. In some cases HS relayed BED motion data to shore within a few hours of the event. HS provided an acoustic console to the SIN, allowing shore-based users to check SIN health and status, perform maintenance, etc. 4. Mapping operations were conducted 4 times at the SIN site to quantify depositional and erosional patterns, utilizing a prototype ultra-high-resolution mapping system on the ROV Doc Ricketts. The system consists of a 400-kHz Reson 7125 multibeam sonar, a 3DatDepth SL1 subsea LiIDAR, two stereo color cameras, and a Kearfott SeaDevil INS. At a survey altitude of 3 m above the bed, the mapping system provides 5-cm resolution multibeam bathymetry, 1-cm resolution lidar bathymetry, and 2-mm resolution photomosaics. We will describe the design and full capabilities of these novel systems.