High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments.

PubMed

Engelhardt, Tim; Kallmeyer, Jens; Cypionka, Heribert; Engelen, Bert

2014-07-01

Marine sediments cover two-thirds of our planet and harbor huge numbers of living prokaryotes. Long-term survival of indigenous microorganisms within the deep subsurface is still enigmatic, as sources of organic carbon are vanishingly small. To better understand controlling factors of microbial life, we have analyzed viral abundance within a comprehensive set of globally distributed subsurface sediments. Phages were detected by electron microscopy in deep (320 m below seafloor), ancient (∼14 Ma old) and the most oligotrophic subsurface sediments of the world's oceans (South Pacific Gyre (SPG)). The numbers of viruses (10(4)-10(9) cm(-3), counted by epifluorescence microscopy) generally decreased with sediment depth, but always exceeded the total cell counts. The enormous numbers of viruses indicate their impact as a controlling factor for prokaryotic mortality in the marine deep biosphere. The virus-to-cell ratios increased in deeper and more oligotrophic layers, exhibiting values of up to 225 in the deep subsurface of the SPG. High numbers of phages might be due to absorption onto the sediment matrix and a diminished degradation by exoenzymes. However, even in the oldest sediments, microbial communities are capable of maintaining viral populations, indicating an ongoing viral production and thus, viruses provide an independent indicator for microbial life in the marine deep biosphere.

Integrated approach for demarcating subsurface pollution and saline water intrusion zones in SIPCOT area: a case study from Cuddalore in Southern India.

PubMed

Sankaran, S; Sonkamble, S; Krishnakumar, K; Mondal, N C

2012-08-01

This paper deals with a systematic hydrogeological, geophysical, and hydrochemical investigations carried out in SIPCOT area in Southern India to demarcate groundwater pollution and saline intrusion through Uppanar River, which flows parallel to sea coast with high salinity (average TDS 28, 870 mg/l) due to back waters as well as discharge of industrial and domestic effluents. Hydrogeological and geophysical investigations comprising topographic survey, self-potential, multi-electrode resistivity imaging, and water quality monitoring were found the extent of saline water intrusion in the south and pockets of subsurface pollution in the north of the study area. Since the area is beset with highly permeable unconfined quaternary alluvium forming potential aquifer at shallow depth, long-term excessive pumping and influence of the River have led to lowering of the water table and degradation of water quality through increased salinity there by generating reversal of hydraulic gradient in the south. The improper management of industrial wastes and left over chemicals by closed industries has led surface and subsurface pollution in the north of the study area.

Depositionally controlled recycling of iron and sulfur in marine sediments and its isotopic consequences

NASA Astrophysics Data System (ADS)

Riedinger, N.; Formolo, M.; Arnold, G. L.; Vossmeyer, A.; Henkel, S.; Sawicka, J.; Kasten, S.; Lyons, T. W.

2011-12-01

The continental margin off Uruguay and Argentina is characterized by highly dynamic depositional conditions. This variable depositional regime significantly impacts the biogeochemical cycles of iron and sulfur. Mass deposit related redeposition of reduced minerals can lead to the reoxidation of these phases and thus to an overprint of their geochemical primary signatures. Due to rapid burial these oxidized phases are still present in deeper subsurface sediments. To study the effects of sediment relocation on the sulfur and iron inventory we collected shallow and deep subsurface sediment samples via multicorer and gravity cores, respectively, in the western Argentine Basin during the RV Meteor Expedition M78/3 in May-July 2009. The samples were retrieved from shelf, slope and deep basin sites. The concentration and sulfur isotope composition of acid volatile sulfur (AVS), chromium reducible sulfur (CRS), elemental sulfur and total organic sulfur were determined. Furthermore, sequential iron extraction techniques were applied assess the distribution of iron oxide phases within the sediment. The investigated sediments are dominated by terrigenous inputs, with high amounts of reactive ferric iron minerals and only low concentrations of calcium carbonate. Total organic carbon concentrations show strong variation in the shallow subsurface sediments ranging between approximately 0.7 and 6.4 wt% for different sites. These concentrations do not correlate with water depths. Pore water accumulations of hydrogen sulfide are restricted to an interval at the sulfate-methane transition (SMT) zone a few meters below the sediment surface. In these deeper subsurface sediments pyrite is precipitated in this zone of hydrogen sulfide excess, whereas the accumulation of authigenic AVS and elemental sulfur (up to 2000 ppm) occurs at the upper and lower boundary of the sulfidic zone due the reaction of iron oxides with limited amounts of sulfide. Furthermore, our preliminary results indicate that there is a link between modern deposition in the shallow subsurface sediments and the long-term signals being buried and preserved in the deep subsurface layers. The data show that the burial of elemental sulfur into deep subsurface sediments can fuel the deep biosphere and has consequences for isotopic overprints tied, for example, to oxidation and disproportionation processes in the deeper sediments.

Active hematite concretion formation in modern acid saline lake sediments, Lake Brown, Western Australia

NASA Astrophysics Data System (ADS)

Bowen, Brenda Beitler; Benison, K. C.; Oboh-Ikuenobe, F. E.; Story, S.; Mormile, M. R.

2008-04-01

Concretions can provide valuable records of diagenesis and fluid-sediment interactions, however, reconstruction of ancient concretion-forming conditions can be difficult. Observation of modern hematite concretion growth in a natural sedimentary setting provides a rare glimpse of conditions at the time of formation. Spheroidal hematite-cemented concretions are actively precipitating in shallow subsurface sediments at Lake Brown in Western Australia. Lake Brown is a hypersaline (total dissolved solids up to 23%) and acidic (pH ˜ 4) ephemeral lake. The concretion host sediments were deposited between ˜ 1 and 3 ka, based on dating of stratigraphically higher and lower beds. These age constraints indicate that the diagenetic concretions formed < 3 ka, and field observations suggest that some are currently forming. These modern concretions from Lake Brown provide an example of very early diagenetic formation in acid and saline conditions that may be analogous to past conditions on Mars. Previously, the hematite concretions in the Burns formation on Mars have been interpreted as late stage diagenetic products, requiring long geologic time scales and multiple fluid flow events to form. In contrast, the Lake Brown concretions support the possibility of similar syndepositional to very early diagenetic concretion precipitation on Mars.

A Search for Freshwater in the Saline Aquifers of Coastal Bangladesh

NASA Astrophysics Data System (ADS)

Peters, C.; Hornberger, G. M.

2017-12-01

Can we locate pockets of freshwater amidst brackish groundwater in remote villages in Bangladesh? This study explores what we can infer about local groundwater-surface water (GW-SW) interactions in the polders of coastal Bangladesh. In this underdeveloped region, the shallow groundwater is primarily brackish with unpredictable apportioning of freshwater pockets. We use transects of piezometers, cores, electromagnetic induction, and water chemistry surveys to explore two sources of potential fresh groundwater: (1) tidal channel-aquifer exchange and (2) meteoric recharge. Freshwater is difficult to find due to disparate subsurface lithology, asymmetrical tidal dynamics, extreme seasonal fluctuations in rainfall, and limited field data. Observations suggest substantial lateral variability in shallow subsurface conductivity profiles as well as tidal pressure signals in piezometers. Nevertheless, active exchange of freshwater may be limited due to low permeability of banks and surface sediments limits. Small scale heterogeneity in delta formation likely caused much of the groundwater salinity variation. Without adequate ground truthing of groundwater quality, the ability to deduce the exact location of freshwater pockets may be restricted.

The metal oxide fraction of pelagic sediment in the equatorial North Pacific Ocean: A source of metals in ferromanganese nodules

USGS Publications Warehouse

Piper, D.Z.

1988-01-01

Pelagic sediment recovered at DOMES Site A in the equatorial North Pacific (151??W, 9?? 15???N) consists of a surface homogeneous layer, approximately 10 cm thick, overlying a strongly mottled layer that is lighter in color. The radiolarian composition of both units is Quaternary. In areas where this sediment was only a few centimeters thick, the underlying sediment was early Tertiary. Clay mineralogy and major oxide composition of the two Quaternary sediments are uniform. Their similarity to continental shale suggests that the sediment has a terrigenous source. Clay mineralogy and major oxide composition of the Tertiary sediment also are uniform, although they differ markedly from the Quarternary sediment. In contrast to the major oxides, concentrations of Mn, Co, Cu, and Ni soluble in hydroxylamine hydrochlorideacetic acid are strongly different in the surface and subsurface Quaternary sediment. Mn and Ni exhibit pronounced depletions in the subsurface sediment, Ni slightly more than Mn. Cu is also depleted in the subsurface sediment, but less than Mn. It is also depleted in the subsurface Tertiary sediment, whereas the Mn concentration remains high. Concentration of Co relative to Mn increases into the subsurface Quaternary sediment to a constant Co:Mn ratio of 3 ?? 10-2. The trivalent REE (the REE exclusive of Ce) and Fe exhibit little down-core variation. Distribution of elements in these sediments is closely related to their concentration in associated surface ferromanganese nodules. The nodules are of two distinct types: those from the area where the Quaternary sediment is relatively thick have ??-MnO2 as the dominant manganese mineral. The ratios of Ni:Mn, Cu:Mn, and Fe:Mn in these nodules approximate the corresponding ratios of the soluble fraction of surface sediment. Todorokite is the dominant mineral of nodules recovered from areas where the Quaternary sediment is thin. Relatively high Cu/Mn, Ni/Mn, and low Fe/Mn ratios of these nodules mirror differences between the soluble fraction of surface and subsurface Quaternary sediment. These compositional trends of sediment and nodules at DOMES Site A reflect a diagenetic origin for the todorokite nodules and a predominantly hydrogenous origin for the ??-MnO2 nodules. ?? 1988.

Rheological Properties of Aqueous Colloidal Silica Suspensions Related to Amendment Delivery for Subsurface Remediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Shuo; Zhong, Lirong; Li, Guanghe

Colloidal silica (fumed silica) suspensions are being tested as carriers for remedial amendment delivery in subsurface remediation and as media for underground contamination containment. The knowledge of the rheological behavior of the silica suspensions is lack in the literature while it is essential for the preparation and field injection of the suspensions. This contribution is focused on the rheological characteristics of colloidal silica suspensions under various environmental conditions relevant to amendment delivery for subsurface remediation. We investigated the influence of silica particle concentration, water source, ionic strength, pH, aging, amendment type and concentration, and subsurface sediment on the rheological behaviormore » of the suspensions. All tested suspension formulations exhibited shear thinning before gelation. Higher silica particle concentration and salinity (Na+ and K+) increased suspensions’ viscosity and the degree of shear thinning. The viscosity of suspensions increased with aging. The suspensions at natural pH exhibited the highest viscosity compared to the acidic and alkaline suspensions with the same silica concentration. Addition of KMnO4 amendment to aqueous silica suspensions increased viscosity, while addition of alcohol amendment decreased suspensions’ viscosity. The presence of amendment did not reduce shear thinning. The gelation rate of silica suspensions was increased with silica concentration and with the addition of sediments. The rheological characteristics of shear thinning aqueous fumed silica suspensions were compared to that of shear thinning solutions formed with organic polymer xanthan gum, which was applied for amendment delivery in subsurface remediation.« less

Mechanisms of Arsenic Mobilization and Attenuation in Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Root, R.; Choi, S.; Vlassopoulos, D.

2007-12-01

This talk will review molecular mechanisms of As mobilization and attenuation in subsurface sediments using examples from recent field studies that represent a range in oxidation-redox (redox) potential. As a ubiquitous trace element in sediments, As speciation and fate is linked to the abundance and biogeochemical behavior of the generally more abundant redox-active elements Fe, S, and Mn. All four elements are subject to oxidation, reduction, and pH-dependent processes such as sorption, desorption, precipitation, and dissolution, and which may include both biotic and abiotic reaction steps. We have used spectroscopic interrogation and geochemical modeling to characterize As speciation in subsurface sediments in several contrasting environments, including high and low S and Fe settings. Aquifers most at risk for contamination by As include those that are rich in organic matter and nutrients, stimulating high rates of microbial reduction and creating anoxic conditions, but limited in labile or available S and/or Fe that remove As by precipitation or adsorption. In subsurface sediments with low labile S and Fe, laboratory experiments and spectroscopic studies suggest that sediment Mn minerals are important in the oxidation of sorbed As(III) to As(V), but that they have a limited oxidation capacity. Arsenic attenuation and mobilization in the subsurface are affected by seasonal variations when hydraulic conditions are influenced by surface infiltration, which may induce transitions from oxidized to reduced conditions (or vice versa) in porewater.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, E.J.; Wijesinghe, A.M.; Viani, B.E.

1997-01-14

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculants and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude. 8 figs.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, Edward J.; Wijesinghe, Ananda M.; Viani, Brian E.

1997-01-01

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculents and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude.

Development of Surface Complexation Models of Cr(VI) Adsorption on Soils, Sediments and Model Mixtures of Kaolinite, Montmorillonite, γ-Alumina, Hydrous Manganese and Ferric Oxides and Goethite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koretsky, Carla

Hexavalent chromium is a highly toxic contaminant that has been introduced into aquifers and shallow sediments and soils via many anthropogenic activities. Hexavalent chromium contamination is a problem or potential problem in the shallow subsurface at several DOE sites, including Hanford, Idaho National Laboratory, Los Alamos National Laboratory and the Oak Ridge Reservation (DOE, 2008). To accurately quantify the fate and transport of hexavalent chromium at DOE and other contaminated sites, robust geochemical models, capable of correctly predicting changes in chromium chemical form resulting from chemical reactions occurring in subsurface environments are needed. One important chemical reaction that may greatlymore » impact the bioavailability and mobility of hexavalent chromium in the subsurface is chemical binding to the surfaces of particulates, termed adsorption or surface complexation. Quantitative thermodynamic surface complexation models have been derived that can correctly calculate hexavalent chromium adsorption on well-characterized materials over ranges in subsurface conditions, such pH and salinity. However, models have not yet been developed for hexavalent chromium adsorption on many important constituents of natural soils and sediments, such as clay minerals. Furthermore, most of the existing thermodynamic models have been developed for relatively simple, single solid systems and have rarely been tested for the complex mixtures of solids present in real sediments and soils. In this study, the adsorption of hexavalent chromium was measured as a function of pH (3-10), salinity (0.001 to 0.1 M NaNO3), and partial pressure of carbon dioxide(0-5%) on a suite of naturally-occurring solids including goethite (FeOOH), hydrous manganese oxide (MnOOH), hydrous ferric oxide (Fe(OH)3), γ-alumina (Al2O3), kaolinite (Al2Si2O5(OH)4), and montmorillonite (Na3(Al, Mg)2Si4O10(OH)2-nH2O). The results show that all of these materials can bind substantial quantities of hexavalent chromium, especially at low pH. Unexpectedly, experiments with the clay minerals kaolinite and montmorillonite suggest that hexavalent chromium may interact with these solids over much longer periods of time than expected. Furthermore, hexavalent chromium may irreversibly bind to these solids, perhaps because of oxidation-reduction reactions occurring on the surfaces of the clay minerals. More work should be done to investigate and quantify these chemical reactions. Experiments conducted with mixtures of goethite, hydrous manganese oxide, hydrous ferric oxide, γ-alumina, montmorillonite and kaolinite demonstrate that it is possible to correctly predict hexavalent chromium binding in the presence of multiple minerals using thermodynamic models derived for the simpler systems. Further, these models suggest that of the six solid considered in this study, goethite is typically the solid to which most of the hexavalent chromium will bind. Experiments completed with organic-rich and organic-poor natural sediments demonstrate that in organic-rich substrates, organic matter is likely to control uptake of the hexavalent chromium. The models derived and tested in this study for hexavalent chromium binding to γ-alumina, hydrous manganese oxide, goethite, hydrous ferric oxide and clay minerals can be used to better predict changes in hexavalent chromium bioavailability and mobility in contaminated sediments and soils.« less

Subsurface North Atlantic warming as a trigger of rapid cooling events: evidence from the early Pleistocene (MIS 31-19)

NASA Astrophysics Data System (ADS)

Hernández-Almeida, I.; Sierro, F.-J.; Cacho, I.; Flores, J.-A.

2015-04-01

Subsurface water column dynamics in the subpolar North Atlantic were reconstructed in order to improve the understanding of the cause of abrupt ice-rafted detritus (IRD) events during cold periods of the early Pleistocene. We used paired Mg / Ca and δ18O measurements of Neogloboquadrina pachyderma (sinistral - sin.), deep-dwelling planktonic foraminifera, to estimate the subsurface temperatures and seawater δ18O from a sediment core from Gardar Drift, in the subpolar North Atlantic. Carbon isotopes of benthic and planktonic foraminifera from the same site provide information about the ventilation and water column nutrient gradient. Mg / Ca-based temperatures and seawater δ18O suggest increased subsurface temperatures and salinities during ice-rafting, likely due to northward subsurface transport of subtropical waters during periods of weaker Atlantic Meridional Overturning Circulation (AMOC). Planktonic carbon isotopes support this suggestion, showing coincident increased subsurface ventilation during deposition of IRD. Subsurface accumulation of warm waters would have resulted in basal warming and break-up of ice-shelves, leading to massive iceberg discharges in the North Atlantic. The release of heat stored at the subsurface to the atmosphere would have helped to restart the AMOC. This mechanism is in agreement with modelling and proxy studies that observe a subsurface warming in the North Atlantic in response to AMOC slowdown during Marine Isotope Stage (MIS) 3.

Quantification of microbial activity in subsurface environments using a hydrogenase enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Nickel, J.; Kallmeyer, J.

2012-04-01

The subsurface biosphere is the largest microbial ecosystem on Earth. Despite its large size and extensive industrial exploitation, very little is known about the role of microbial activity in the subsurface. Subsurface microbial activity plays a fundamental role in geochemical cycles of carbon and other biologically important elements. How the indigenous microbial communities are supplied with energy is one of the most fundamental questions in subsurface research. It is still an enigma how these communities can survive with such recalcitrant carbon over geological time scales. Despite its usually very low concentration, hydrogen is an important element in subsurface environments. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways; they either obtain protons from the radiolysis of water and/or cleavage of hydrogen generated by the alteration of basaltic crust, or they dispose of protons by formation of water. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy-generating metabolic processes to electron acceptors such as carbon dioxide or sulfate. H2ase activity can therefore be used as a measure for total microbial activity as it targets a key metabolic compound rather than a specific turnover process. Using a highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey and in marine subsurface sediments of the Barents Sea. Additionally, sulfate reduction rates (SRRs) were measured to compare the results of the H2ase enzyme assay with the quantitatively most important electron acceptor process. H2ase activity was found at all sites, measured values and distribution of activity varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3 d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3 d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3 d-1 down to a depth of 1.60 m. At all sites the SRR profile followed the H2ase activity profile until SRR declined to values close to the minimum detection limit (~10 pmol cm-3 d-1). H2ase activity increased again after SRR declined, indicating that other microbial processes are becoming quantitatively more important. The H2ase and SRR data show that our assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Methane in Sediments From Three Tropical, Coastal Lagoons on the Yucatan Peninsula, Mexico

NASA Astrophysics Data System (ADS)

Young, B.; Paytan, A.; Miller, L.; Herrera-Silveira, J.

2002-12-01

Tropical wetlands are significant sources of methane (CH4) to the atmosphere, and the majority of research on methane flux and cycling in the tropics has been conducted in fresh-water wetlands and lakes. However, several previous studies have shown that tropical coastal ecosystems can produce significant methane flux to the atmosphere despite the presence of moderate to marine salinities. Information regarding methane cycling within the sediments is crucial to understanding how natural and anthropogenic changes may influence these systems. We measured methane concentrations in sediments from two tropical coastal lagoons during different seasons, as well as in a third, heavily polluted, lagoon (Terminos) during the rainy season. These three lagoons, Celestun, Chelem, and Terminos, have similar vegetation, seasonal temperature and rainfall patterns, and substrate geology, but very different levels of ground water discharge and pollution. Methane concentrations in Celestun and Terminos lagoon showed high spatial variability(> 0.001 to 5 mmol kg-1 wet sediment), while sediments in Chelem Lagoon, which has near marine salinities and little sewage discharge, showed much lower variability of methane concentrations. Methane concentrations in Celestun sediments displayed two predominant patterns: some profiles contained a peak in methane concentration (1 to 2 mmole methane kg-1 wet sediment) between 5 and 15 cm below the surface while the other sediment profiles instead displayed a steady or monotonic increase in methane concentration with depth to approximately 0.025-0.080 mmol kg-1 at 10-15cm below surface followed by stable methane concentrations to the bottom of the cores (20-45 cm below the surface). A subsurface peak in methane concentrations was also found in some locations in Chelem, however, the concentrations were much lower than those measured in Celestun. Previous studies have shown that sewage pollution may drastically increase methane production in tropical coastal ecosystems. Laboratory experiments using sediment from the upper 20 cm in Celestun lagoon resulted in high rates of biogenic production of methane from the addition of trimethylamine, hydrogen, and, while additions of formate and acetate stimulated methane production to a lesser extent. This indicates that methane production in these sediments may be highly responsive to natural or anthropogenic changes in substrate availability. By synthesizing laboratory data and extensive field measurements from the lagoons, we hope to shed light on the factors controlling methane cycling in these sediments, and to better estimate methane flux to the atmosphere from these ecosystems.

Effects of imposed salinity gradients on dissimilatory arsenate reduction, sulfate reduction, and other microbial processes in sediments from two California soda lakes

USGS Publications Warehouse

Kulp, T.R.; Han, S.; Saltikov, C.W.; Lanoil, B.D.; Zargar, K.; Oremland, R.S.

2007-01-01

Salinity effects on microbial community structure and on potential rates of arsenate reduction, arsenite oxidation, sulfate reduction, denitrification, and methanogenesis were examined in sediment slurries from two California soda lakes. We conducted experiments with Mono Lake and Searles Lake sediments over a wide range of salt concentrations (25 to 346 g liter-1). With the exception of sulfate reduction, rates of all processes demonstrated an inverse relationship to total salinity. However, each of these processes persisted at low but detectable rates at salt saturation. Denaturing gradient gel electrophoresis analysis of partial 16S rRNA genes amplified from As(V) reduction slurries revealed that distinct microbial populations grew at low (25 to 50 g liter-1), intermediate (100 to 200 g liter-1), and high (>300 g liter-1) salinity. At intermediate and high salinities, a close relative of a cultivated As-respiring halophile was present. These results suggest that organisms adapted to more dilute conditions can remain viable at high salinity and rapidly repopulate the lake during periods of rising lake level. In contrast to As reduction, sulfate reduction in Mono Lake slurries was undetectable at salt saturation. Furthermore, sulfate reduction was excluded from Searles Lake sediments at any salinity despite the presence of abundant sulfate. Sulfate reduction occurred in Searles Lake sediment slurries only following inoculation with Mono Lake sediment, indicating the absence of sulfate-reducing flora. Experiments with borate-amended Mono Lake slurries suggest that the notably high (0.46 molal) concentration of borate in the Searles Lake brine was responsible for the exclusion of sulfate reducers from that ecosystem. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.

Tropical North Atlantic subsurface warming events as a fingerprint for AMOC variability during Marine Isotope Stage 3

NASA Astrophysics Data System (ADS)

Parker, Andrew O.; Schmidt, Matthew W.; Chang, Ping

2015-11-01

The role of Atlantic Meridional Overturning Circulation (AMOC) as the driver of Dansgaard-Oeschger (DO) variability that characterized Marine Isotope Stage 3 (MIS 3) has long been hypothesized. Although there is ample proxy evidence suggesting that DO events were robust features of glacial climate, there is little data supporting a link with AMOC. Recently, modeling studies and subsurface temperature reconstructions have suggested that subsurface warming across the tropical North Atlantic can be used to fingerprint a weakened AMOC during the deglacial because a reduction in the strength of the western boundary current allows warm salinity maximum water of the subtropical gyre to enter the deep tropics. To determine if AMOC variability played a role during the DO cycles of MIS 3, we present new, high-resolution Mg/Ca and δ18O records spanning 24-52 kyr from the near-surface dwelling planktonic foraminifera Globigerinoides ruber and the lower thermocline dwelling planktonic foraminifera Globorotalia truncatulinoides in Southern Caribbean core VM12-107 (11.33°N, 66.63°W, 1079 m depth). Our subsurface Mg/Ca record reveals abrupt increases in Mg/Ca ratios (the largest equal to a 4°C warming) during the interstadial-stadial transition of most DO events during this period. This change is consistent with reconstructions of subsurface warming events associated with cold events across the deglacial using the same core. Additionally, our data support the conclusion reached by a recently published study from the Florida Straits that AMOC did not undergo significant reductions during Heinrich events 2 and 3. This record presents some of the first high-resolution marine sediment derived evidence for variable AMOC during MIS 3.

Analysis of a PAH-degrading bacterial population in subsurface sediments on the Mid-Atlantic Ridge

NASA Astrophysics Data System (ADS)

Shao, Zongze; Cui, Zhisong; Dong, Chunming; Lai, Qiliang; Chen, Liang

2010-05-01

Little is known about the types and concentrations of polycyclic aromatic hydrocarbons (PAHs) existing in the deep-sea subsurface environment, which is believed to be cold, oligothrophic and of high static pressure. PAHs in the upper layers of the water column are unavoidably subjected to degradation while they are deposited to the sea floor and become embedded in the deep-sea sediment. In this report, a high concentration of PAHs was discovered in the sediment 2.7 m beneath the bottom surface at a water depth of 3962 m on the Mid-Atlantic Ridge (MAR). The total concentration of PAHs was 445 ng (g dry wt sediment) -1. Among the seven detected PAHs, the concentrations of phenanthrene (222 ng g -1) and fluorene (79 ng g -1) were relatively high. In addition, PAH-degrading bacteria were found within the sediments. As in a previously detected site on the MAR, in the PAH-enriched region of this site, a bacterium of the genus Cycloclasticus was found to be the predominant isolate detected by PCR-DGGE analysis. In addition, bacteria of the Halomonas, Marinobacter, Alcanivorax, Thalassospira and Maricaulis genera, were also included in the PAH-degrading community. In summary, a high concentration of PAHs was detected in the subsurface of the deep-sea sediment, and once again, the Cycloclasticus bacterium was confirmed to be a ubiquitous marine PAH degrader even in the subsurface marine environment. Considering the abundance of PAHs therein, biodegradation is thus thought to be inactive, probably because of the low temperature, limited oxygen and/or limited nutrients.

Quantifying microbial activity in deep subsurface sediments using a tritium based hydrognease enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R.; Nickel, J.; Kallmeyer, J.

2012-12-01

Microbial life is widespread in Earth's subsurface and estimated to represent a significant fraction of Earth's total living biomass. However, very little is known about subsurface microbial activity and its fundamental role in biogeochemical cycles of carbon and other biologically important elements. Hydrogen is one of the most important elements in subsurface anaerobic microbial metabolism. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways. They either consume or produce protons for ATP synthesis. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy generating metabolic processes to electron acceptors such as CO2 or sulfate. H2ase enzyme targets a key metabolic compound in cellular metabolism therefore the assay can be used as a measure for total microbial activity without the need to identify any specific metabolic process. Using the highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey, in marine sediments of the Barents Sea and in deep subseafloor sediments from the Nankai Trough. H2ase activity could be quantified at all depths of all sites but the activity distribution varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3d-1 down to a depth of 1.60 m. At all sites the sulfate reduction rate profile followed the upper part of the H2ase activity profile until sulfate reduction reached the minimum detection limit (ca. 10 pmol cm-3d-1). H2ase activity could still be quantified after the decline of sulfate reduction, indicating that other microbial processes are becoming quantitatively more important. Similarly, H2ase activity could be quantified at greater depths (ca. 400 mbsf) in Nankai Trough sediments. Nankai Trough is one of the world's most geologically active accretionary wedges, where the Philippine Plate is subducting under the southwest of Japan. Due to the transient faulting, huge amounts of energy are liberated that enhance chemical transformations of organic and inorganic matter. An increase in H2ase activity could be observed at greater depth, which suggests that microbial activity is stimulated by the fault activity. Current techniques for the quantification of microbial activity in deep sediments have already reached their physical and technical limits and-in many cases- are still not sensitive enough to quantify extremely low rates of microbial activity. Additional to the quantification of specific processes, estimates of total microbial activity will provide valuable information on energy flux and microbial metabolism in the subsurface biosphere and other low-energy environments as well as help identifying hotspots of microbial activity. The tritium H2ase assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Microbial Communities and Organic Matter Composition in Surface and Subsurface Sediments of the Helgoland Mud Area, North Sea

PubMed Central

Oni, Oluwatobi E.; Schmidt, Frauke; Miyatake, Tetsuro; Kasten, Sabine; Witt, Matthias; Hinrichs, Kai-Uwe; Friedrich, Michael W.

2015-01-01

The role of microorganisms in the cycling of sedimentary organic carbon is a crucial one. To better understand relationships between molecular composition of a potentially bioavailable fraction of organic matter and microbial populations, bacterial and archaeal communities were characterized using pyrosequencing-based 16S rRNA gene analysis in surface (top 30 cm) and subsurface/deeper sediments (30–530 cm) of the Helgoland mud area, North Sea. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS) was used to characterize a potentially bioavailable organic matter fraction (hot-water extractable organic matter, WE-OM). Algal polymer-associated microbial populations such as members of the Gammaproteobacteria, Bacteroidetes, and Verrucomicrobia were dominant in surface sediments while members of the Chloroflexi (Dehalococcoidales and candidate order GIF9) and Miscellaneous Crenarchaeota Groups (MCG), both of which are linked to degradation of more recalcitrant, aromatic compounds and detrital proteins, were dominant in subsurface sediments. Microbial populations dominant in subsurface sediments (Chloroflexi, members of MCG, and Thermoplasmata) showed strong correlations to total organic carbon (TOC) content. Changes of WE-OM with sediment depth reveal molecular transformations from oxygen-rich [high oxygen to carbon (O/C), low hydrogen to carbon (H/C) ratios] aromatic compounds and highly unsaturated compounds toward compounds with lower O/C and higher H/C ratios. The observed molecular changes were most pronounced in organic compounds containing only CHO atoms. Our data thus, highlights classes of sedimentary organic compounds that may serve as microbial energy sources in methanic marine subsurface environments. PMID:26635758

Sedimentary silicon isotope indicates the Kuroshio subsurface upwelling in the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Y.; Yang, S.; Su, N.

2017-12-01

The Kuroshio as the western boundary current of the North Pacific subtropical circulation, originates from east of the Philippine Islands, and flows northeastward along the eastern coast of Taiwan. It's subsurface water intrudes the East China Sea (ECS) and forms a typical upwelling on the inner shelf, which may play an important role in the material and heat transport, biogeochemical process and marine ecosystem of the ECS.To date, most previous studies on the Kuroshio subsurface upwelling focuse on the seasonal and interannual variations, and few researches touch on the upwelling evolution in the geologic past. In this study, eight short sediment cores were taken along the ECS inner shelf (upwelling area), which allow us to reconstruct the upwelling history over the last several hundred years. Although conventional indexes of oceanographic changes, such as salinity, temperature and hydrogen and oxygen isotope, provide valuable constraints on the modern oceanic circulation and water mass movements, how to reconstruct them from geologic records is always a challenging work. In this contribution, we present the data of stable silicon isotope, biogenic opal, diatom assemblages, element geochemistry and stable carbon and nitrogen isotopes of these core sediments, and aim to decipher the Kuroshio subsurface upwelling history on the ECS shelf. We will also illustrate the difference in δ30Si signals between small (<30 um) and large (>150 um) diatom fractions, and test whether it is an effective indicator for paleo-upwelling intensity.

Extracting Hydrogeology from Heliborne Dual Moment Transient Electromagnetic Investigations in Geologically Divergent Terrenes

NASA Astrophysics Data System (ADS)

Ahmed, S.; Chandra, S.; Auken, E.; Verma, S. K.

2015-12-01

Comprehensive knowledge of aquifer system is an important requisite for its effective management in India. Geological formations are complex and variable, punctual and scarce information are not adequate to understand, asses and manage them. Continuous data acquisition, their interpretation and integration with available geological/geophysical information is the solution. Heliborne dual moment transient electromagnetic (HeliTEM) and magnetic (HeliMAG) measurements have been carried out in divergent geological terrenes in India comprising Gangetic alluvium, Tertiary sediments underlying the Thar desert, Deccan basalts and Gondwana sediments, weathered and fractured granite gneisses and schists and the coastal alluvium with Tertiary sediments. The survey was carried out using state of the art equipment SkyTEM. The paper presents a synopsis of the results of the HeliTEM surveys that have helped in obtaining continuous information on the geoelectrical nature of sub-surface. HeliTEM data were supported by a number of ground geophysical surveys. The results provide the 3D subsurface structures controlling the groundwater conditions, the regional continuity of probable aquifers, the variations in lithological character and the quality of water in terms of salinity. Specialized features pertaining to hydrogeological characteristics obtained from this study are as follows: A clear delineation of clay beds and their spatial distribution providing the multi-layered aquifer setup in the Gangetic plains. Delineation of low resistivity zones in the quartzite below the over exploited aquifers indicating the possibility of new aquifers. Presence of freshwater zones underneath the saline water aquifers in the thick and dry sands in deserts. Clear demarcation of different lava flows, mapping the structural controls and highly porous zones in the contact of basalts and Gondwanas. A complete and continuous mapping of weathered zone in crystalline hard rock areas providing information on the recharge zones. The setting of multi-layered aquifer and different zones of salt water intrusion in the coastal sedimentary formations. The study has helped in establishing an appropriate cost-effective strategy for 3D mapping of aquifers on a regional scale providing valuable inputs to perform aquifer modeling.

Simulating the role of surface forcing on observed multidecadal upper-ocean salinity changes

DOE PAGES

Lago, Veronique; Wijffels, Susan E.; Durack, Paul J.; ...

2016-07-18

The ocean’s surface salinity field has changed over the observed record, driven by an intensification of the water cycle in response to global warming. However, the origin and causes of the coincident subsurface salinity changes are not fully understood. The relationship between imposed surface salinity and temperature changes and their corresponding subsurface changes is investigated using idealized ocean model experiments. The ocean’s surface has warmed by about 0.5°C (50 yr) –1 while the surface salinity pattern has amplified by about 8% per 50 years. The idealized experiments are constructed for a 50-yr period, allowing a qualitative comparison to the observedmore » salinity and temperature changes previously reported. The comparison suggests that changes in both modeled surface salinity and temperature are required to replicate the three-dimensional pattern of observed salinity change. The results also show that the effects of surface changes in temperature and salinity act linearly on the changes in subsurface salinity. In addition, surface salinity pattern amplification appears to be the leading driver of subsurface salinity change on depth surfaces; however, surface warming is also required to replicate the observed patterns of change on density surfaces. This is the result of isopycnal migration modified by the ocean surface warming, which produces significant salinity changes on density surfaces.« less

Simulating the role of surface forcing on observed multidecadal upper-ocean salinity changes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lago, Veronique; Wijffels, Susan E.; Durack, Paul J.

The ocean’s surface salinity field has changed over the observed record, driven by an intensification of the water cycle in response to global warming. However, the origin and causes of the coincident subsurface salinity changes are not fully understood. The relationship between imposed surface salinity and temperature changes and their corresponding subsurface changes is investigated using idealized ocean model experiments. The ocean’s surface has warmed by about 0.5°C (50 yr) –1 while the surface salinity pattern has amplified by about 8% per 50 years. The idealized experiments are constructed for a 50-yr period, allowing a qualitative comparison to the observedmore » salinity and temperature changes previously reported. The comparison suggests that changes in both modeled surface salinity and temperature are required to replicate the three-dimensional pattern of observed salinity change. The results also show that the effects of surface changes in temperature and salinity act linearly on the changes in subsurface salinity. In addition, surface salinity pattern amplification appears to be the leading driver of subsurface salinity change on depth surfaces; however, surface warming is also required to replicate the observed patterns of change on density surfaces. This is the result of isopycnal migration modified by the ocean surface warming, which produces significant salinity changes on density surfaces.« less

Modeling of sediment transport in a saltwater lake with supplemental sandy freshwater.

PubMed

Liang, Li; Deng, Yun; Li, Ran; Li, Jia

2018-06-22

Considering the highly complex flow structure of saltwater lakes during freshwater supplementation, a three-dimensional numerical model was developed to simulate suspended sediment transport in saltwater lakes. The model was validated using measurements of the salinity and sediment concentration during a pumping test at Yamdrok Lake. The simulation results were in quantitative agreement with the measured data. The observed and simulated results also indicated that the wind stress and vertical salinity gradient have a significant influence on salinity and sediment transport in a saltwater lake. The validated model was then used to predict and analyze the contributions of wind, the supplement flow rate and salinity stratification to the sediment transport process in Yamdrok Lake during continuous river water supplementation. The simulation results showed that after the sandy river water was continuously discharged into the saltwater lake, the lateral diffusion trends of the sediment exhibited three stages: linear growth in the inflow direction, logarithmic growth in the wind direction, and stabilization. Furthermore, wind was the dominant factor in driving the lake flow pattern and sediment transport. Specifically, wind can effectively reduce the area of the sediment diffusion zone by increasing the lateral sediment carrying and dilution capacities. The effect of inflow on the lake current is negligible, but the extent of the sediment turbidity zone mainly depends on the inflow. Reducing the inflow discharge can decrease the area of the sediment turbidity zone to proportions that far exceed the proportions of inflow discharge reductions. In addition, the high-salinity lake water can support the supplemented freshwater via buoyancy forces, which weaken vertical mixing and sediment settlement and increase lake currents and sediment diffusion near the surface.

Improved measurement of extracellular enzymatic activities in subsurface sediments using competitive desorption treatment

NASA Astrophysics Data System (ADS)

Hoarfrost, Adrienne; Snider, Rachel; Arnosti, Carol

2017-02-01

Extracellular enzymatic activities initiate microbially-driven heterotrophic carbon cycling in subsurface sediments. While measurement of hydrolytic activities in sediments is fundamental to our understanding of carbon cycling, these measurements are often technically difficult due to sorption of organic substrates to the sediment matrix. Most methods that measure hydrolysis of organic substrates in sediments rely on recovery of a fluorophore or fluorescently-labeled target substrate from a sediment incubation. The tendency for substrates to sorb to sediments results in lower recovery of an added substrate, and can result in data that are unusable or difficult to interpret. We developed a treatment using competitive desorption of a fluorescently-labeled, high molecular weight organic substrate that improves recovery of the labeled substrate from sediment subsamples. Competitive desorption treatment improved recovery of the fluorescent substrate by a median of 66%, expanded the range of sediments for which activity measurements could be made, and was effective in sediments from a broad range of geochemical contexts. More reliable measurements of hydrolytic activities in sediments will yield usable and more easily interpretable data from a wider range of sedimentary environments, enabling better understanding of microbially-catalyzed carbon cycling in subsurface environments.

Potential role of resurfacing Subtropical Underwater in ENSO evolution

NASA Astrophysics Data System (ADS)

Qu, T.; Chi, J.

2017-12-01

Results from a model of the Estimating the Circulation and Climate of the Ocean (ECCO) have shown that the resurfacing of high salinity Subtropical Underwater contributes to the sea surface salinity variability in the equatorial Pacific. On interannual time scale, this contribution can account for as much as 25% of the surface freshwater flux anomalies and is believed to play a role in ENSO evolution. Having these results in mind, this study investigates the surface salinity budget and its primary controls in the equatorial Pacific using ECCO output for the period 1993-2016. Particular attention is paid to 2014/2015 and 2015/2016. Preliminary analyses of the model results suggest that enhanced subsurface processes and in particular enhanced entrainment of Subtropical Underwater are primarily responsible for the positive sea surface salinity anomalies in the central equatorial Pacific during 2014/2015, which represents an opposite phase of El Niño. These subsurface processes weakened during 2015/2016, diretly contributing to the development of the 2015/2016 El Niño. The mechanisms controlling these subsurface processes are discussed.

The nature and function of microbial enzymes in subsurface marine sediments

NASA Astrophysics Data System (ADS)

Steen, A. D.; Schmidt, J.

2016-02-01

Isotopic and genomic evidence indicates that marine sediments contain populations of active heterotrophic microorganisms which appear to metabolize old, detrital, apparently recalcitrant organic matter. In surface communities, heterotrophs use extracellular enzymes to access complex organic matter. In subsurface sediments, in which microbial doubling times can be on the order of hundreds or thousands of years, it is not clear whether extracellular enzymes could remain stable and active long enough to constitute a 'profitable' stragtegy for accessing complex organic carbon. Here we present evidence that a wide range of extracellular enzyme are active in subsurface sediments from two different environments: the White Oak River, NC, and deep (up to 80 m) sediments of the Baltic Sea Basin recovered from IODP Expedition 347. In the White Oak River, enzymes from deeper sediments appear to be better-adapted to highly-degraded organic matter than enzymes from surface sediments. In the Baltic Sea, preliminary data suggest that enzymes related to nitrogen acquisition are preferentially expressed. By characterizing the extracellular enzymes present in marine sediments, we hope to achieve a better understanding of the mechanisms that control sedimentary organic matter remineralization and preservation.

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments

PubMed Central

Webster, Gordon; O'Sullivan, Louise A.; Meng, Yiyu; Williams, Angharad S.; Sass, Andrea M.; Watkins, Andrew J.; Parkes, R. John; Weightman, Andrew J.

2014-01-01

Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2–8 × 107 16S rRNA gene copies cm−3) than the high-salinity marine sites from BR and AR (2 × 104–2 × 107 and 4 × 106–2 × 107 16S rRNA gene copies cm−3, respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the ‘Bathyarchaeota’ (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only ‘marine’ group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. PMID:25764553

Impact of topography on groundwater salinization due to ocean surge inundation

NASA Astrophysics Data System (ADS)

Yu, Xuan; Yang, Jie; Graf, Thomas; Koneshloo, Mohammad; O'Neal, Michael A.; Michael, Holly A.

2016-08-01

Sea-level rise and increases in the frequency and intensity of ocean surges caused by climate change are likely to exacerbate adverse effects on low-lying coastal areas. The landward flow of water during ocean surges introduces salt to surficial coastal aquifers and threatens groundwater resources. Coastal topographic features (e.g., ponds, dunes, barrier islands, and channels) likely have a strong impact on overwash and salinization processes, but are generally highly simplified in modeling studies. To understand topographic impacts on groundwater salinization, we modeled a theoretical overwash event and variable-density groundwater flow and salt transport in 3-D using the fully coupled surface and subsurface numerical simulator, HydroGeoSphere. The model simulates the coastal aquifer as an integrated system considering overland flow, coupled surface and subsurface exchange, variably saturated flow, and variable-density groundwater flow. To represent various coastal landscape types, we simulated both synthetic fields and real-world coastal topography from Delaware, USA. The groundwater salinization assessment suggested that the topographic connectivity promoting overland flow controls the volume of aquifer that is salinized. In contrast, the amount of water that can be stored in surface depressions determines the amount of seawater that infiltrates the subsurface and the time for seawater to flush from the aquifer. Our study suggests that topography has a significant impact on groundwater salinization due to ocean surge overwash, with important implications for coastal land management and groundwater vulnerability assessment.

Subsurface low dissolved oxygen occurred at fresh- and saline-water intersection of the Pearl River estuary during the summer period.

PubMed

Li, Gang; Liu, Jiaxing; Diao, Zenghui; Jiang, Xin; Li, Jiajun; Ke, Zhixin; Shen, Pingping; Ren, Lijuan; Huang, Liangmin; Tan, Yehui

2018-01-01

Estuarine oxygen depletion is one of the worldwide problems, which is caused by the freshwater-input-derived severe stratification and high nutrients loading. In this study we presented the horizontal and vertical distributions of dissolved oxygen (DO) in the Pearl River estuary, together with temperature, salinity, chlorophyll a concentration and heterotrophic bacteria abundance obtained from two cruises during the summer (wet) and winter (dry) periods of 2015. In surface water, the DO level in the summer period was lower and varied greater, as compared to the winter period. The DO remained unsaturated in the summer period if salinity is <12 and saturated if salinity is >12; while in the winter period it remained saturated throughout the estuary. In subsurface (>5m) water, the DO level varied from 0.71 to 6.65mgL -1 and from 6.58 to 8.20mgL -1 in the summer and winter periods, respectively. Particularly, we observed an area of ~1500km 2 low DO zone in the subsurface water with a threshold of 4mgDOL -1 during this summer period, that located at the fresh- and saline-water intersection where is characterized with severe stratification and high heterotrophic bacteria abundance. In addition, our results indicate that spatial DO variability in surface water was contributed differently by biological and physio-chemical variables in the summer and winter periods, respectively. Copyright © 2017 Elsevier Ltd. All rights reserved.

Water masses in the Humboldt Current System: Properties, distribution, and the nitrate deficit as a chemical water mass tracer for Equatorial Subsurface Water off Chile

NASA Astrophysics Data System (ADS)

Silva, Nelson; Rojas, Nora; Fedele, Aldo

2009-07-01

Three sections are used to analyze the physical and chemical characteristics of the water masses in the eastern South Pacific and their distributions. Oceanographic data were taken from the SCORPIO (May-June 1967), PIQUERO (May-June 1969), and KRILL (June 1974) cruises. Vertical sections of temperature, salinity, σ θ, dissolved oxygen, nitrate, nitrite, phosphate, and silicate were used to analyze the water column structure. Five water masses were identified in the zone through T- S diagrams: Subantarctic Water, Subtropical Water, Equatorial Subsurface Water, Antarctic Intermediate Water, and Pacific Deep Water. Their proportions in the sea water mixture are calculated using the mixing triangle method. Vertical sections were used to describe the geographical distributions of the water mass cores in the upper 1500 m. Several characteristic oceanographic features in the study area were analyzed: the shallow salinity minimum displacement towards the equator, the equatorial subsurface salinity maximum associated with a dissolved oxygen minimum zone and a high nutrient content displacement towards the south, and the equatorward intermediate Antarctic salinity minimum associated with a dissolved oxygen maximum. The nitrate deficit generated in the denitrification area off Peru and northern Chile is proposed as a conservative chemical tracer for the Equatorial Subsurface Waters off the coast of Chile, south of 25°S.

Performance of Subsurface Tube Drainage System in Saline Soils: A Case Study

NASA Astrophysics Data System (ADS)

Pali, A. K.

2015-06-01

In order to improve the saline and water logged soils caused due to groundwater table rise, installation of subsurface drainage system is considered as one of the best remedies. However, the design of the drainage system has to be accurate so that the field performance results conform to the designed results. In this investigation, the field performance of subsurface tube drainage system installed at the study area was evaluated. The performance was evaluated on the basis of comparison of the designed value of water table drop as 30 cm after 2 days of drainage and predicted and field measured hydraulic heads for a consecutive drainage period of 14 days. The investigation revealed that the actual drop of water table after 2 days of drainage was 25 cm, about 17 % less than the designed value of 30 cm after 2 days of drainage. The comparison of hydraulic heads predicted by Van Schilfgaarde equation of unsteady drainage with the field-measured hydraulic heads showed that the deviation of predicted hydraulic heads varied within a range of ±8 % indicating high acceptability of Van Schlifgaarde equation for designing subsurface drainage system in saline and water logged soils resembling to that of the study area.

Sinkhole formation and subsidence along the Dead Sea coast, Israel

NASA Astrophysics Data System (ADS)

Yechieli, Yoseph; Abelson, Meir; Baer, Gideon

2016-05-01

More than 4,000 sinkholes have formed since the 1980s within a 60-km-long and 1-km-wide strip along the western coast of the Dead Sea (DS) in Israel. Their formation rate accelerated in recent years to >400 sinkholes per year. They cluster mostly in specific sites up to 1,000 m long and 200 m wide, which align parallel to the general direction of the fault systems associated with the DS Rift. The abrupt appearance of the sinkholes reflects changes to the groundwater regime around the shrinking DS. The eastward retreat of the shoreline and the lake-level drop (1 m/year in recent years) cause an eastward and downward migration of the fresh/saline groundwater interface. Consequently, a subsurface salt layer, which was previously enveloped by saline groundwater, is gradually being invaded and submerged by relatively fresh groundwater, and cavities form due to the rapid dissolution of the salt. Collapse of the overlying sediments into these cavities results in sinkholes at the surface. An association between sinkhole sites and land subsidence is revealed by interferometric synthetic aperture radar (InSAR) measurements. On a broad scale (hundreds of meters), subsidence occurs due to compaction of fine-grained sediments as groundwater levels decline along the retreating DS shoreline. At smaller scales (tens of meters), subsidence appears above subsurface cavities in association with the sinkholes, serving in many cases as sinkhole precursors, a few weeks to more than a year before their actual appearance at the surface. This paper overviews the processes of sinkhole formation and their relation to land subsidence.

Low salinity hydrocarbon water disposal through deep subsurface drip irrigation: leaching of native selenium

USGS Publications Warehouse

Bern, Carleton R.; Engle, Mark A.; Boehlke, Adam R.; Zupancic, John W.; Brown, Adrian; Figueroa, Linda; Wolkersdorfer, Christian

2013-01-01

A subsurface drip irrigation system is being used in Wyoming’s Powder River Basin that treats high sodium, low salinity, coal bed methane (CBM) produced water with sulfuric acid and injects it into cropped fields at a depth of 0.92 m. Dissolution of native gypsum releases calcium that combats soil degradation that would otherwise result from high sodium water. Native selenium is leached from soil by application of the CBM water and traces native salt mobilization to groundwater. Resulting selenium concentrations in groundwater at this alluvial site were generally low (0.5–23 μg/L) compared to Wyoming’s agricultural use suitability standard (20 μg/L).

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.

PubMed

Webster, Gordon; O'Sullivan, Louise A; Meng, Yiyu; Williams, Angharad S; Sass, Andrea M; Watkins, Andrew J; Parkes, R John; Weightman, Andrew J

2015-02-01

Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2-8 × 10(7) 16S rRNA gene copies cm(-3)) than the high-salinity marine sites from BR and AR (2 × 10(4)-2 × 10(7) and 4 × 10(6)-2 × 10(7) 16S rRNA gene copies cm(-3), respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the 'Bathyarchaeota' (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only 'marine' group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. © The Author 2014. Published by Oxford University Press on behalf of Federation of European Microbiological Society.

Holocene evolution of the North Atlantic subsurface transport

NASA Astrophysics Data System (ADS)

Repschläger, Janne; Garbe-Schönberg, Dieter; Weinelt, Mara; Schneider, Ralph

2017-04-01

Previous studies suggested that short-term freshening events in the subpolar gyre can be counterbalanced by advection of saline waters from the subtropical gyre and thus stabilize the Atlantic Meridional Overturning Circulation (AMOC). However, little is known about the inter-gyre transport pathways. Here, we infer changes in surface and subsurface transport between the subtropical and polar North Atlantic during the last 11 000 years, by combining new temperature and salinity reconstructions obtained from combined δ18O and Mg / Ca measurements on surface and subsurface dwelling foraminifera with published foraminiferal abundance data from the subtropical North Atlantic, and with salinity and temperature data from the tropical and subpolar North Atlantic. This compilation implies an overall stable subtropical warm surface water transport since 10 ka BP. In contrast, subsurface warm water transport started at about 8 ka but still with subsurface heat storage in the subtropical gyre. The full strength of intergyre exchange was probably reached only after the onset of northward transport of warm saline subsurface waters at about 7 ka BP, associated with the onset of the modern AMOC mode. A critical evaluation of different potential forcing mechanisms leads to the assumption that freshwater supply from the Laurentide Ice Sheet was the main control on subtropical to subpolar ocean transport at surface and subsurface levels.

Carbonate system biogeochemistry in a subterranean estuary - Waquoit Bay, USA

NASA Astrophysics Data System (ADS)

Liu, Qian; Charette, Matthew A.; Breier, Crystaline F.; Henderson, Paul B.; McCorkle, Daniel C.; Martin, William; Dai, Minhan

2017-04-01

Quantifying carbon fluxes associated with submarine groundwater discharge (SGD) remains challenging due to the complex biogeochemistry of the carbonate system in the subterranean estuary (STE). Here we conducted time series measurements of total alkalinity (TAlk) and dissolved inorganic carbon (DIC) in a well-studied coastal aquifer (Waquoit Bay, Massachusetts, USA). Groundwater samples were collected monthly from May 2009 to June 2010 across the freshwater-saltwater mixing zone of the Waquoit Bay (WB) STE. The concentrations of both TAlk and DIC in zero-salinity groundwater were variable, but were lower than those in the bay water (S ∼ 28). DIC underwent slightly non-conservative mixing between low and intermediate salinities while there was an apparent additional DIC source at high salinity (>20) in all seasons. TAlk concentrations exhibited even stronger variations, with evidence of both production and consumption in high salinity zones, and consistent TAlk consumption at intermediate salinity in summer and fall (June-December, 2009). The increases in DIC and TAlk at high salinity were attributed to aerobic respiration and denitrification in WB sediments during bay water recharge of the STE. We infer that the loss of TAlk at intermediate salinity reflects H+ production as reduced compounds (e.g. Fe2+) are oxidized within the STE. In terms of impacts on surface water inorganic carbon budgets, the SGD-derived DIC flux was mainly controlled by seasonal changes in SGD while a combination of TAlk concentration variability and SGD drove the TAlk flux. SGD-derived DIC, aqueous CO2, and H+ fluxes to the bay were ∼40-50% higher in summer vs. in winter, a result of enhanced marine groundwater flux and significant TAlk removal (proton addition) during periods of high seawater intrusion. Furthermore, the SGD-derived DIC flux was consistently greater than TAlk flux regardless of season, indicating that SGD serves to reduce the CO2 buffering capacity of surface water. Our results highlight the importance of seasonality and subsurface biogeochemical processes on the subterranean estuary carbonate system and the resulting impact on SGD-derived TAlk, DIC, aqueous CO2, and H+ fluxes to the coastal ocean.

Active Marine Subsurface Bacterial Population Composition in Low Organic Carbon Environments from IODP Expedition 320

NASA Astrophysics Data System (ADS)

Shepard, A.; Reese, B. K.; Mills, H. J.; IODP Expedition 320 Shipboard Science Party

2011-12-01

The marine subsurface environment contains abundant and active microorganisms. These microbial populations are considered integral players in the marine subsurface biogeochemical system with significance in global geochemical cycles and reservoirs. However, variations in microbial community structure, activity and function associated with the wide-ranging sedimentary and geochemical environments found globally have not been fully resolved. Integrated Ocean Drilling Program Expedition 320 recovered sediments from site U1332. Two sampling depths were selected for analysis that spanned differing lithological units in the sediment core. Sediments were composed of mostly clay with zeolite minerals at 8 meters below sea floor (mbsf). At 27 mbsf, sediments were composed of alternating clayey radiolarian ooze and nannofossil ooze. The concentration of SO42- had little variability throughout the core and the concentration of Fe2+ remained close to, or below, detection limits (0.4 μM). Total organic carbon content ranged from a low of 0.03 wt% to a high of 0.07 wt% between 6 and 30 mbsf providing an opportunity to evaluate marine subsurface microbial communities under extreme electron donor limiting conditions. The metabolically active fraction of the bacterial population was isolated by the extraction and amplification of 16S ribosomal RNA. Pyrosequencing of 16S rRNA transcripts and subsequent bioinformatic analyses provided a robust data set (15,931 total classified sequences) to characterize the community at a high resolution. As observed in other subsurface environments, the overall diversity of active bacterial populations decreased with depth. The population shifted from a diverse but evenly distributed community at approximately 8 mbsf to a Firmicutes dominated population at 27 mbsf (80% of sequences). A total of 95% of the sequences at 27 mbsf were grouped into three genera: Lactobacillus (phylum Firmicutes) at 80% of the total sequences, Marinobacter (phylum Proteobacteria) at 8%, and Formosa (phylum Bacteroidetes) at 7%. These lineages support a paradigm suggesting the importance of fermentation in the subsurface. However, this study extends the predicted range for fermentation below the shallow subsurface and into organic carbon limited marine sediments. Other previously characterized subsurface active populations from environments with higher organic carbon concentrations do not show similar levels of reduced diversity or predominance of fermentative populations. This study further emphasizes the spatial variability of microbial populations in the deep subsurface and highlights the need for continued exploration.

Sorption and oxic degradation of the explosive CL-20 during transport in subsurface sediments.

PubMed

Szecsody, J E; Girvin, D C; Devary, B J; Campbell, J A

2004-08-01

The abiotic sorption and oxic degradation processes that control the fate of the explosive CL-20, Hexanitrohexaazaisowurtzitane, in the subsurface environment were investigated to determine the potential for vadose and groundwater contamination. Sorption of aqueous CL-20 is relatively small (K(d) = 0.02-3.83 cm3 g(-1) for 7 sediments and 12 minerals), which results in only slight retardation relative to water movement. Thus, CL-20 could move quickly through unsaturated and saturated sediments of comparable composition to groundwater, similar to the subsurface behavior of RDX. CL-20 sorption was mainly to mineral surfaces of the sediments, and the resulting isotherm was nonlinear. CL-20 abiotically degrades in oxic environments at slow rates (i.e., 10s to 100s of hours) with a wide variety of minerals, but at fast rates (i.e., minutes) in the presence of 2:1 phyllosilicate clays (hectorite, montmorillonite, nontronite), micas (biotite, illite), and specific oxides (MnO2 and the ferrous-ferric iron oxide magnetite). High concentrations of surface ferrous iron in a dithionite reduced sediment degraded CL-20 the fastest (half-life < 0.05 h), but 2:1 clays containing no structural or adsorbed ferrous iron (hectorite) could also quickly degrade CL-20 (half-life < 0.2 h). CL-20 degradation rates were slower in natural sediments (half-life 3-800 h) compared to minerals. Sediments with slow degradation rates and small sorption would exhibit the highest potential for deep subsurface migration. Products of CL-20 oxic degradation included three high molecular weight compounds and anions (nitrite and formate). The 2-3.5 moles of nitrite produced suggest CL-20 nitro-groups are degraded, and the amount of formate produced (0.2-1.2 moles) suggests the CL-20 cage structure is broken in some sediments. Identification of further degradation products and CL-20 mineralization rates is needed to fully assess the impact of these CL-20 transformation rates on the risk of CL-20 (and degradation product) subsurface movement.

Observed salinity changes in the Alappuzha mud bank, southwest coast of India and its implication to hypothesis of mudbank formation

NASA Astrophysics Data System (ADS)

Muraleedharan, K. R.; Dinesh Kumar, P. K.; Prasanna Kumar, S.; Srijith, B.; John, Sebin; Naveen Kumar, K. R.

2017-04-01

Alappuzha mud bank draws special attention among the twenty-mud bank locations reported along the Kerala coast by its remoteness from riverine sources. Among several hypotheses proposed for the formation of mud bank, the subterranean hypothesis was most accepted because of the occurrence of low salinity in the bottom layers. The present study provides evidence to show that occurrence of low salinity waters near the bottom in the mud bank region is an artifact of measuring technique employed for the measurement of salinity. The usual technique of conductivity based salinity determination completely fails in the presence of water laden with high amount of suspended sediment. Laboratory experiments were conducted to determine the response of electrode and conductivity cell sensor types to determine the salinity using a range of suspended sediment in the water column. Actual sediment samples from the mud bank region were utilized for the above studies. Based on field observations and experiments, we conclude that the low salinity was the manifestation of the presence highly turbid fluid mud formation in the mud bank region rather than the influence of fresh water.

Actinobacterial diversity across a marine transgression in the deep subsurface off Shimokita Peninsula, Japan

NASA Astrophysics Data System (ADS)

Harrison, B. K.; Bailey, J. V.

2013-12-01

Sediment horizons represent a significant - but not permanent - barrier to microbial transport. Cells commonly attach to mineral surfaces in unconsolidated sediments. However, by taxis, growth, or passive migration under advecting fluids, some portion of the microbial community may transgress sedimentary boundaries. Few studies have attempted to constrain such transport of community signatures in the marine subsurface and its potential impact on biogeography. Integrated Ocean Drilling Program (IODP) Expedition 337 off the Shimokita Peninsula recovered sediments over a greater than 1km interval representing a gradual decrease of terrestrial influence, from tidal to continental shelf depositional settings. This sequence represents a key opportunity to link subsurface microbial communities to lithological variability and investigate the permanence of community signatures characteristic of distinct depositional regimes. The phylogenetic connectivity between marine and terrestrially-influenced deposits may demonstrate to what degree sediments offer a substantial barrier to cell transport in the subsurface. Previous work has demonstrated that the Actinobacterial phylum is broadly distributed in marine sediments (Maldonado et al., 2005), present and active in the deep subsurface (Orsi et al., 2013), and that marine and terrestrial lineages may potentially be distinguished by 16S rRNA gene sequencing (e.g. Prieto-Davó et al., 2013). We report on Actinobacteria-specific 16S rRNA gene diversity recovered between 1370 and 2642 mbsf with high-throughput sequencing using the Illumina MiSeq platform, as well as selective assembly and analysis of environmental clone libraries.

The Importance of Subsurface Production for Carbon Export - Evidence from Past Oceans

NASA Astrophysics Data System (ADS)

Kemp, A. E. S.

2016-02-01

The maxim of the geological concept of uniformitarianism is "the present is the key to the past", but in the context of our temporally and spatially minimal observational record of modern ocean biogeochemical processes, ancient ocean sediments may provide critical evidence of the key species involved in carbon flux. Specifically, laminated marine sediments that preserve the seasonal flux cycle represent "palaeo-sediment traps" that vastly expand our knowledge of the operations of the marine biological carbon pump. Several key subsurface-dwelling diatom taxa, hitherto thought to be biogeochemically insignificant, are dominant components of ancient marine sediments. For example, the sapropels and equivalent horizons that have accumulated in the Mediterranean over the past 5 million years, contain abundant rhizosolenid and hemiaulid diatoms. These deposits contain the highest concentrations of organic carbon and there is extensive evidence that this was produced by subsurface production in a deep chlorophyll maximum. The highly stratified conditions that led to this subsurface production and carbon flux are in contrast to prevailing views that have held upwelling systems as those with the highest potential for export in the global ocean. Similarly, studies of ancient "greenhouse" periods such as the Cretaceous, with highly stratified oceans and which are potential analogues for future climate change, show evidence for extensive subsurface production. Together with emerging evidence from stratified regions of the modern ocean, such as the subtropical gyres, insights from these ancient oceans suggest that a reappraisal is required of current views on key phytoplankton producers and their role the operation of the marine biological carbon pump.

Numerical model of water flow and solute accumulation in vertisols using HYDRUS 2D/3D code

NASA Astrophysics Data System (ADS)

Weiss, Tomáš; Dahan, Ofer; Turkeltub, Tuvia

2015-04-01

Keywords: dessication-crack-induced-salinization, preferential flow, conceptual model, numerical model, vadose zone, vertisols, soil water retention function, HYDRUS 2D/3D Vertisols cover a hydrologically very significant area of semi-arid regions often through which water infiltrates to groundwater aquifers. Understanding of water flow and solute accumulation is thus very relevant to agricultural activity and water resources management. Previous works suggest a conceptual model of dessication-crack-induced-salinization where salinization of sediment in the deep section of the vadose zone (up to 4 m) is induced by subsurface evaporation due to convective air flow in the dessication cracks. It suggests that the salinization is induced by the hydraulic gradient between the dry sediment in the vicinity of cracks (low potential) and the relatively wet sediment further from the main cracks (high potential). This paper presents a modified previously suggested conceptual model and a numerical model. The model uses a simple uniform flow approach but unconventionally prescribes the boundary conditions and the hydraulic parameters of soil. The numerical model is bound to one location close to a dairy farm waste lagoon, but the application of the suggested conceptual model could be possibly extended to all semi-arid regions with vertisols. Simulations were conducted using several modeling approaches with an ultimate goal of fitting the simulation results to the controlling variables measured in the field: temporal variation in water content across thick layer of unsaturated clay sediment (>10 m), sediment salinity and salinity the water draining down the vadose zone to the water table. The development of the model was engineered in several steps; all computed as forward solutions by try-and-error approach. The model suggests very deep instant infiltration of fresh water up to 12 m, which is also supported by the field data. The paper suggests prescribing a special atmospheric boundary to the wall of the crack (so that the solute can accumulate due to evaporation on the crack block wall, and infiltrating fresh water can push the solute further down) - in order to do so, HYDRUS 2D/3D code had to be modified by its developers. Unconventionally, the main fitting parameters were: parameter a and n in the soil water retention curve and saturated hydraulic conductivity. The amount of infiltrated water (within a reasonable range), the infiltration function in the crack and the actual evaporation from the crack were also used as secondary fitting parameters. The model supports the previous findings that significant amount (~90%) of water from rain events must infiltrate through the crack. It was also noted that infiltration from the crack has to be increasing with depth and that the highest infiltration rate should be somewhere between 1-3m. This paper suggests a new way how to model vertisols in semi-arid regions. It also supports the previous findings about vertisols: especially, the utmost importance of soil cracks as preferential pathways for water and contaminants and soil cracks as deep evaporators.

Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments

USGS Publications Warehouse

Lovley, D.R.; Goodwin, S.

1988-01-01

Factors controlling the concentration of dissolved hydrogen gas in anaerobic sedimentary environments were investigated. Results, presented here or previously, demonstrated that, in sediments, only microorganisms catalyze the oxidation of H2 coupled to the reduction of nitrate, Mn(IV), Fe(III), sulfate, or carbon dioxide. Theoretical considerations suggested that, at steady-state conditions, H2 concentrations are primarily dependent upon the physiological characteristics of the microorganism(s) consuming the H2 and that organisms catalyzing H2 oxidation, with the reduction of a more electrochemically positive electron acceptor, can maintain lower H2 concentrations than organisms using electron acceptors which yield less energy from H2 oxidation. The H2 concentrations associated with the specified predominant terminal electron-accepting reactions in bottom sediments of a variety of surface water environments were: methanogenesis, 7-10 nM; sulfate reduction, 1-1.5 nM; Fe(III) reduction, 0.2 nM; Mn(IV) or nitrate reduction, less than 0.05 nM. Sediments with the same terminal electron acceptor for organic matter oxidation had comparable H2 concentrations, despite variations in the rate of organic matter decomposition, pH, and salinity. Thus, each terminal electron-accepting reaction had a unique range of steady-state H2 concentrations associated with it. Preliminary studies in a coastal plain aquifer indicated that H2 concentrations also vary in response to changes in the predominant terminal electron-accepting process in deep subsurface environments. These studies suggest that H2 measurements may aid in determining which terminal electron-accepting reactions are taking place in surface and subsurface sedimentary environments. ?? 1988.

Groundwater chemistry and occurrence of arsenic in the Meghna floodplain aquifer, southeastern Bangladesh

USGS Publications Warehouse

Zahid, A.; Hassan, M.Q.; Balke, K.-D.; Flegr, M.; Clark, D.W.

2008-01-01

Dissolved major ions and important heavy metals including total arsenic and iron were measured in groundwater from shallow (25-33 m) and deep (191-318 m) tube-wells in southeastern Bangladesh. These analyses are intended to help describe geochemical processes active in the aquifers and the source and release mechanism of arsenic in sediments for the Meghna Floodplain aquifer. The elevated Cl- and higher proportions of Na+ relative to Ca2+, Mg2+, and K+ in groundwater suggest the influence by a source of Na+ and Cl-. Use of chemical fertilizers may cause higher concentrations of NH 4+ and PO 43- in shallow well samples. In general, most ions are positively correlated with Cl-, with Na+ showing an especially strong correlation with Cl-, indicating that these ions are derived from the same source of saline waters. The relationship between Cl-/HCO 3- ratios and Cl- also shows mixing of fresh groundwater and seawater. Concentrations of dissolved HCO 3- reflect the degree of water-rock interaction in groundwater systems and integrated microbial degradation of organic matter. Mn and Fe-oxyhydroxides are prominent in the clayey subsurface sediment and well known to be strong adsorbents of heavy metals including arsenic. All five shallow well samples had high arsenic concentration that exceeded WHO recommended limit for drinking water. Very low concentrations of SO 42- and NO 3- and high concentrations of dissolved Fe and PO 43- and NH 4+ ions support the reducing condition of subsurface aquifer. Arsenic concentrations demonstrate negative co-relation with the concentrations of SO 42- and NO 3- but correlate weakly with Mo, Fe concentrations and positively with those of P, PO 43- and NH 4+ ions. ?? 2007 Springer-Verlag.

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

Deglacial development of (sub) sea surface temperature and salinity in the subarctic northwest Pacific: Implications for upper-ocean stratification

NASA Astrophysics Data System (ADS)

Riethdorf, Jan-Rainer; Max, Lars; Nürnberg, Dirk; Lembke-Jene, Lester; Tiedemann, Ralf

2013-01-01

Based on models and proxy data, it has been proposed that salinity-driven stratification weakened in the subarctic North Pacific during the last deglaciation, which potentially contributed to the deglacial rise in atmospheric carbon dioxide. We present high-resolution subsurface temperature (TMg/Ca) and subsurface salinity-approximating (δ18Oivc-sw) records across the last 20,000 years from the subarctic North Pacific and its marginal seas, derived from combined stable oxygen isotopes and Mg/Ca ratios of the planktonic foraminiferal species Neogloboquadrina pachyderma (sin.). Our results indicate regionally differing changes of subsurface conditions. During the Heinrich Stadial 1 and the Younger Dryas cold phases, our sites were subject to reduced thermal stratification, brine rejection due to sea-ice formation, and increased advection of low-salinity water from the Alaskan Stream. In contrast, the Bølling-Allerød warm phase was characterized by strengthened thermal stratification, stronger sea-ice melting, and influence of surface waters that were less diluted by the Alaskan Stream. From direct comparison with alkenone-based sea surface temperature estimates (SSTUk'37), we suggest deglacial thermocline changes that were closely related to changes in seasonal contrasts and stratification of the mixed layer. The modern upper-ocean conditions seem to have developed only since the early Holocene.

Varying Inundation Regimes Differentially Affect Natural and ...

EPA Pesticide Factsheets

Climate change is altering sea-level rise rates and precipitation patterns worldwide. Coastal wetlands are vulnerable to these changes. System responses to stressors are important for resource managers and environmental stewards to understand in order to best manage them. Thin layer sand or sediment application to drowning and eroding marshes is one approach to build elevation and resilience. The above- and below-ground structure, soil carbon dioxide emissions, and pore water constituents in vegetated natural marsh sediments and sand-amended sediments were examined at varying inundation regimes between mean sea level and mean high water (0.82 m NAVD88 to 1.49 m NAVD88) in a field experiment at Laws Point, part of the Plum Island Sound Estuary (MA). Significantly lower salinities, pH, sulfides, phosphates, and ammonium were measured in the sand-amended sediments than in the natural sediments. In natural sediments there was a pattern of increasing salinity with increasing elevation while in the sand-amended sediments the trend was reversed, showing decreasing salinity with increasing elevation. Sulfide concentrations generally increased from low to high inundation with highest concentrations at the highest inundation (i.e., at the lowest elevations). High pore water phosphate concentrations were measured at low elevations in the natural sediments, but the sand-amended treatments had mostly low concentrations of phosphate and no consistent pattern with elevation. A

Structure and function of subsurface microbial communities affecting radionuclide transport and bioimmobilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kostka, Joel E.; Prakash, Om; Green, Stefan J.

2012-05-01

Our objectives were to: 1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), 2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and 3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations. Field sampling was conducted at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee. Themore » ORFRC subsurface is exposed to mixed contamination predominated by uranium and nitrate. In short, we effectively addressed all 3 stated objectives of the project. In particular, we isolated and characterized a large number of novel anaerobes with a high bioremediation potential that can be used as model organisms, and we are now able to quantify the function of subsurface sedimentary microbial communities in situ using state-of-the-art gene expression methods (molecular proxies).« less

Humic acids contribution to sedimentary organic matter on a shallow continental shelf (northern Adriatic Sea)

NASA Astrophysics Data System (ADS)

Giani, M.; Rampazzo, F.; Berto, D.

2010-12-01

The shallow northern Adriatic Sea receives large river runoff, predominantly from the Po River, which is the main allochthonous source of nutrients and organic matter. The origin and quality of organic matter deposited in the sediments can influence the degradation processes and oxygen consumption in the bottom waters as well as the fate of many pollutants. Therefore the humic acids (HA) were quantified in surface and sub-surface sediments collected in an area of the north-western Adriatic platform south of Po River. HA showed to have a relevant contribution to sedimentary organic matter. HA content in sediments were positively correlated with the organic carbon concentration and negatively with redox potential and pH, particularly in sub-surface reduced sediments, suggesting their important role in the diagenetic processes taking place in anoxic conditions. Elemental composition of HA extracted from surface and sub-surface sediments showed a wide range of variation of the C org/N ratios which could be due to a mixed (terrestrial and marine) origin and/or an elevated bacteria degradation of nitrogen during diagenesis processes in sediments. The spectroscopic ratios A 2/A 4 and A 4/A 6 of HA confirmed a mixed origin with a high degree of condensation of the HA extracted from sediments.

Groundwater Salinity Simulation of a Subsurface Reservoir in Taiwan

NASA Astrophysics Data System (ADS)

Fang, H. T.

2015-12-01

The subsurface reservoir is located in Chi-Ken Basin, Pescadores (a group islands located at western part of Taiwan). There is no river in these remote islands and thus the freshwater supply is relied on the subsurface reservoir. The basin area of the subsurface reservoir is 2.14 km2 , discharge of groundwater is 1.27×106m3 , annual planning water supplies is 7.9×105m3 , which include for domestic agricultural usage. The annual average temperature is 23.3oC, average moisture is 80~85%, annual average rainfall is 913 mm, but ET rate is 1975mm. As there is no single river in the basin; the major recharge of groundwater is by infiltration. Chi-Ken reservoir is the first subsurface reservoir in Taiwan. Originally, the water quality of the reservoir is good. The reservoir has had the salinity problem since 1991 and it became more and more serious from 1992 until 1994. Possible reason of the salinity problem was the shortage of rainfall or the leakage of the subsurface barrier which caused the seawater intrusion. The present study aimed to determine the leakage position of subsurface barrier that caused the salinity problem. In order to perform the simulation for different possible leakage position of the subsurface reservoir, a Groundwater Modeling System (GMS) is used to define soils layer data, hydro-geological parameters, initial conditions, boundary conditions and the generation of three dimension meshes. A three dimension FEMWATER(Yeh , 1996) numerical model was adopted to find the possible leakage position of the subsurface barrier and location of seawater intrusion by comparing the simulation of different possible leakage with the observations. 1.By assuming the leakage position in the bottom of barrier, the simulated numerical result matched the observation better than the other assumed leakage positions. It showed that the most possible leakage position was at the bottom of the barrier. 2.The research applied three dimension FEMWATER and GMS as an interface to input parameter. The simulation of water level and chloride concentration already showed the real situation, and the result can be applied to the future study of the Chi-Ken subsurface reservoir salinity problems.

Impacts of the IOD-associated temperature and salinity anomalies on the intermittent equatorial undercurrent anomalies

NASA Astrophysics Data System (ADS)

Li, Junde; Liang, Chujin; Tang, Youmin; Liu, Xiaohui; Lian, Tao; Shen, Zheqi; Li, Xiaojing

2017-11-01

The study of Equatorial Undercurrent (EUC) has attracted a broad attention in recent years due to its strong response and feedback to the Indian Ocean Dipole. In this paper, we first produce a high-quality simulation of three-dimensional temperature, salinity and zonal current simulation from 1982 to 2014, using a high-resolution ocean general circulation model. On this basis, with two sensitivity experiments, we investigate the role of temperature and salinity anomalies in driving and enhancing the EUC during the positive IOD events by examining the variation of the EUC seasonal cycle and diagnosing the zonal momentum budget along the equatorial Indian Ocean. Our results show that during January-March, the EUC can appear along the entire equatorial Indian Ocean in all years, but during August-November, the EUC can appear and reach the eastern Indian Ocean only during the positive IOD events. The zonal momentum budget analysis indicates that the pressure gradient force contributes most to the variation of the eastward acceleration of zonal currents in the subsurface. During the positive IOD events, strong negative subsurface temperature anomalies exist in the eastern Indian Ocean, with negative surface salinity anomalies in the central and eastern Indian Ocean, resulting in a large pressure gradient force to drive EUC during the August-November. Further, the results of two sensitivity experiments indicate that the temperature anomalies significantly impact the pressure gradient force, playing a leading role in driving the EUC, while the surface salinity anomalies can secondarily help to intensify the eastward EUC through increasing the zonal density gradient in the eastern Indian Ocean and impacting the vertical momentum advection in the subsurface.

Estimating sedimentation rates and sources in a partially urbanized catchment using caesium-137

NASA Astrophysics Data System (ADS)

Ormerod, L. M.

1998-06-01

While there has been increased interest in determining sedimentation rates and sources in agricultural and forested catchments in recent years, there have been few studies dealing with urbanized catchments. A study of sedimentation rates and sources within channel and floodplain deposits of a partially urbanized catchment has been undertaken using the 137Cs technique. Results for sedimentation rates showed no particular downstream pattern. This may be partially explained by underestimation of sedimentation rates at some sites by failure to sample the full 137Cs profile, floodplain erosion and deliberate removal of sediment. Evidence of lateral increases in net sedimentation rates with distance from the channel may be explained by increased floodplain erosion at sites closer to the channel and floodplain formation by lateral deposition. Potential sediment sources for the catchment were considered to be forest topsoil, subsurface material and sediments derived from urban areas, which were found to be predominantly subsurface material. Tracing techniques showed an increase in subsurface material for downstream sites, confirming expectations that subsurface material would increase in the downstream direction in response to the direct and indirect effects of urbanization.

Hudson River Paleoclimate, Sea Level, and Human Impact: A Record From Piermont Marsh, NY

NASA Technical Reports Server (NTRS)

Kurdyla; Peteet, Dorothy; Liberman, Louisa; Sugar; Wong; Hansen, James E. (Technical Monitor)

2001-01-01

A 13.77 meter sediment core from Piermont Marsh, NY (40 00 N, 73 55W) records the local and regional vegetational and foraminiferal history of the Hudson Estuary. The sediments were sampled every 4 cm, which represents a decadal to centuryscale resolution. Basal sediment dating is in progress, and the 11-m depth represents about 4000 years. Changes in plant macrofossils and charcoal appear to indicate differences in salinIty and drought, suggesting changes in climate. Scirpus, Salicornia, and high levels of charcoal seem to indicate drier/more saline conditions, while lack of these macrofossils and increases in Chara/Nitella, aquatic leaves, and very little charcoal suggests wetter conditions. Other macrofossils include Carex, Juncus, Polygonum, Zanichellia, Ruppia. High resolution AMS dating of plant macrofossils is in progress, and will be compared with changes in Hudson River sediment cores offshore. Foraminiferal assemblages from key intervals of the core will be presented. Human impact in the upper sediments is visible from the influx of grass seeds, primarily Phragmites, and the ragweed pollen rise.

Mercury methylation in sediments of a Brazilian mangrove under different vegetation covers and salinities.

PubMed

de Oliveira, Diana Ciannella Martins; Correia, Raquel Rose Silva; Marinho, Claudio Cardoso; Guimarães, Jean Remy Davée

2015-05-01

The presence and formation of methylmercury (MMHg), a highly toxic form of Hg, in mangrove ecosystems is poorly studied. Therefore the aim of this study was to evaluate mercury methylation potentials in sediment, litter and root samples (Avicennia shaueriana and Spartina alterniflora) from different regions of a mangrove ecosystem, as well as the influence of salinity on methylation. Sediment was sampled under different depths and in mangrove regions with different plant covers and salinities. All samples were incubated with (203)Hg and MM(203)Hg was extracted and measured by liquid scintillation. MMHg was formed in all samples and sites tested including plant roots and litter. Higher Hg methylation was found in the superficial fraction of sediments (0.47-7.82%). Infralittoral sandy sediment had low MMHg formation (0.44-1.61%). Sediment under Rhizophora mangle had lower MMHg formation (0.018-2.23%) than under A. shaueriana (0.2-4.63%) and Laguncularia racemosa (0.08-7.82). MMHg formation in sediment tended to increase with salinity but the differences were not significant. Therefore, MMHg formation occurs in different sites of mangrove ecosystems and may be an important threat that requires further study. Copyright © 2015 Elsevier Ltd. All rights reserved.

Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments

PubMed Central

2016-01-01

Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736

Alteration in Solid State Phosphorous With Depth in Sediments Along the Salinity Transition Zone of a Major Chesapeake Bay Tributary

NASA Astrophysics Data System (ADS)

Hartzell, J. L.; Jordan, T. E.

2006-05-01

Determining the fate of particulate phosphorus in estuaries is essential for addressing the widespread problem of estuarine eutrophication, and is key to understanding P cycling and developing accurate global P budgets. Prominent reservoirs of P in surficial sediments include particulate P associated with iron or organic C. However, the importance of these reservoirs changes with the decomposition of organic matter and the reduction of iron. Also, the importance of iron bound P may decrease with increasing salinity due to the formation of iron sulfides. To investigate estuarine P burial and its relationship to salinity, we collected sediment cores of one-meter depth along the salinity gradient of the Patuxent River estuary (Maryland, USA), a major tributary of Chesapeake Bay. The sediments were analyzed using a sequential sedimentary extraction procedure that quantifies five separate reservoirs of particulate P. Total phosphorus concentrations in freshwater sediments were significantly higher than those in more saline sediments at all depths. Conversely, porewater phosphate concentrations were significantly lower in freshwater sediments than in the more saline sediments. Total P in the saline sediment cores decreased with depth, correlating to a reduction in iron-bound P. However, we did not find a concurrent increase in authigenic apatite with depth. Our findings indicate that mechanisms controlling changes in P sorption to sediments change profoundly with salinity and may contribute to increased bioavailability of phosphates with increasing salinity.

Exploring Microbial Life in Oxic Sediments Underlying Oligotrophic Ocean Gyres

NASA Astrophysics Data System (ADS)

Ziebis, W.; Orcutt, B.; Wankel, S. D.; D'Hondt, S.; Szubin, R.; Kim, J. N.; Zengler, K.

2015-12-01

Oxygen, carbon and nutrient availability are defining parameters for microbial life. In contrast to organic-rich sediments of the continental margins, where high respiration rates lead to a depletion of O2 within a thin layer at the sediment surface, it was discovered that O2 penetrates several tens of meters into organic-poor sediments underlying oligotrophic ocean gyres. In addition, nitrate, another important oxidant, which usually disappears rapidly with depth in anoxic sediments, tends to accumulate above seawater concentrations in the oxic subsurface, reflecting the importance of nitrogen cycling processes, including both nitrification and denitrification. Two IODP drilling expeditions were vital for exploring the nature of the deep subsurface beneath oligotrophic ocean gyres, expedition 329 to the South Pacific Gyre (SPG) and expedition 336 to North Pond, located on the western flank of the Mid-Atlantic ridge beneath the North Atlantic Gyre. Within the ultra-oligotrophic SPG O2 penetrates the entire sediment column from the sediment-water interface to the underlying basement to depths of > 75 m. At North Pond, a topographic depression filled with sediment and surrounded by steep basaltic outcrops, O2 penetrates deeply into the sediment (~ 30 m) until it eventually becomes depleted. O2 also diffuses upward into the sediment from seawater circulating within the young crust underlying the sediment, resulting in a deep oxic layer several meters above the basalt. Despite low organic carbon contents microbial cells persist throughout the entire sediment column within the SPG (> 75 m) and at North Pond, albeit at low abundances. We explored the nature of the subsurface microbial communities by extracting intact cells from large volumes of sediment obtained from drill cores of the two expeditions. By using CARD-FiSH, amplicon (16s rRNA) and metagenome sequencing we shed light on the phylogenetic and functional diversity of the elusive communities residing in the deep oxic sediments of these two different areas. Given the global extent of this oxic subsurface studies of the diversity and metabolic potential of its biome, together with the analyses of porewater geochemical and isotopic composition, are beginning to reveal its role in global biogeochemical cycles.

Varying Inundation Regimes Differentially Affect Natural and Sand-Amended Marsh Sediments.

PubMed

Wigand, C; Sundberg, K; Hanson, A; Davey, E; Johnson, R; Watson, E; Morris, J

2016-01-01

Climate change is altering sea level rise rates and precipitation patterns worldwide. Coastal wetlands are vulnerable to these changes. System responses to stressors are important for resource managers and environmental stewards to understand in order to best manage them. Thin layer sand or sediment application to drowning and eroding marshes is one approach to build elevation and resilience. The above- and below-ground structure, soil carbon dioxide emissions, and pore water constituents in vegetated natural marsh sediments and sand-amended sediments were examined at varying inundation regimes between mean sea level and mean high water (0.82 m NAVD88 to 1.49 m NAVD88) in a field experiment at Laws Point, part of the Plum Island Sound Estuary (MA). Significantly lower salinities, pH, sulfides, phosphates, and ammonium were measured in the sand-amended sediments than in the natural sediments. In natural sediments there was a pattern of increasing salinity with increasing elevation while in the sand-amended sediments the trend was reversed, showing decreasing salinity with increasing elevation. Sulfide concentrations generally increased from low to high inundation with highest concentrations at the highest inundation (i.e., at the lowest elevations). High pore water phosphate concentrations were measured at low elevations in the natural sediments, but the sand-amended treatments had mostly low concentrations of phosphate and no consistent pattern with elevation. At the end of the experiment the lowest elevations generally had the highest measures of pore water ammonium. Soil carbon dioxide emissions were greatest in the sand-amended mesocosms and at higher elevations. Differences in coarse root and rhizome abundances and volumes among the sediment treatments were detected with CT imaging, but by 20 weeks the natural and sand-amended treatments showed similar total belowground biomass at the intermediate and high elevations. Although differences in pore water nutrient concentrations, pH, salinity, and belowground root and rhizome morphology were detected between the natural and sand-amended sediments, similar belowground productivity and total biomass were measured by the end of the growing season. Since the belowground productivity supports organic matter accumulation and peat buildup in marshes, our results suggest that thin layer sand or sediment application is a viable climate adaptation action to build elevation and coastal resiliency, especially in areas with low natural sediment supplies.

STRUCTURE AND FUNCTION OF SUBSURFACE MICROBIAL COMMUNITIES AFFECTING RADIONUCLIDE TRANSPORT AND BIOIMMOBILIZATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joel E. Kostka; Lee Kerkhof; Kuk-Jeong Chin

2011-06-15

The objectives of this project were to: (1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), (2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and (3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee, where themore » subsurface is exposed to mixed contamination predominated by uranium and nitrate. A total of 20 publications (16 published or 'in press' and 4 in review), 10 invited talks, and 43 contributed seminars/ meeting presentations were completed during the past four years of the project. PI Kostka served on one proposal review panel each year for the U.S. DOE Office of Science during the four year project period. The PI leveraged funds from the state of Florida to purchase new instrumentation that aided the project. Support was also leveraged by the PI from the Joint Genome Institute in the form of two successful proposals for genome sequencing. Draft genomes are now available for two novel species isolated during our studies and 5 more genomes are in the pipeline. We effectively addressed each of the three project objectives and research highlights are provided. Task I - Isolation and characterization of novel anaerobes: (1) A wide range of pure cultures of metal-reducing bacteria, sulfate-reducing bacteria, and denitrifying bacteria (32 strains) were isolated from subsurface sediments of the Oak Ridge Field Research Center (ORFRC), where the subsurface is exposed to mixed contamination of uranium and nitrate. These isolates which are new to science all show high sequence identity to sequences retrieved from ORFRC subsurface. (2) Based on physiological and phylogenetic characterization, two new species of subsurface bacteria were described: the metal-reducer Geobacter daltonii, and the denitrifier Rhodanobacter denitrificans. (3) Strains isolated from the ORFRC show that Rhodanobacter species are well adapted to the contaminated subsurface. Strains 2APBS1 and 116-2 grow at high salt (3% NaCl), low pH (3.5) and tolerate high concentrations of nitrate (400mM) and nitrite (100mM). Strain 2APBS1 was demonstrated to grow at in situ acidic pHs down to 2.5. (4) R. denitrificans strain 2APBS1 is the first described Rhodanobacter species shown to denitrify. Nitrate is almost entirely converted to N2O, which may account for the large accumulation of N2O in the ORFRC subsurface. (5) G. daltonii, isolated from uranium- and hydrocarbon-contaminated subsurface sediments of the ORFRC, is the first organism from the subsurface clade of the genus Geobacter that is capable of growth on aromatic hydrocarbons. (6) High quality draft genome sequences and a complete eco-physiological description are completed for R. denitrificans strain 2APBS1 and G. daltonii strain FRC-32. (7) Given their demonstrated relevance to DOE remediation efforts and the availability of detailed genotypic/phenotypic characterization, Rhodanobacter denitrificans strain 2APBS1 and Geobacter daltonii strain FRC-32 represent ideal model organisms to provide a predictive understanding of subsurface microbial activity through metabolic modeling. Tasks II and III-Diversity and distribution of active anaerobes and Mechanisms linking electron transport and the fate of radionuclides: (1) Our study showed that members of genus Rhodanobacter and Geobacter are abundant and active in the uranium and nitrate contaminated subsurface. In the contaminant source zone of the Oak Ridge site, Rhodanobacter spp. are the predominant, active organisms detected (comprising 50% to 100% of rRNA detected). (2) We demonstrated for the first time that the function of microbial communities can be quantified in subsurface sediments using messenger RNA assays (molecular proxies) under in situ conditions. (3) Active Geobacteraceae were identified and phylogenetically characterized from the cDNA of messenger RNA extracted from ORFRC subsurface sediment cores. Multiple clone sequences were retrieved from G. uraniireducens, G. daltonii, and G. metallireducens. (4) Results show that Geobacter strain FRC-32 is capable of growth on benzoate, toluene and benzene as the electron donor, thereby providing evidence that this strain is physiologically distinct from other described members of the subsurface Geobacter clade. (5) Fe(III)-reducing bacteria transform structural Fe in clay minerals from their layer edges rather than from their basal surfaces.« less

Soil- and plant- water uptake in saline environments and their consequences to plant adaptation in fluctuating climates

NASA Astrophysics Data System (ADS)

Volpe, V.; Albertson, J. D.; Katul, G. G.; Marani, M.

2010-12-01

Ecological processes determining plant colonization are quite peculiar and competition among different species is governed by a set of unique adaptations to stress conditions caused by drought, hypoxic or hyper-saline conditions. These adaptations and possible positive feedbacks often lead to the formation of patterns of vegetation colonization and spatial heterogeneity (zonation), and play a primary role in the stabilization of sediments. It is these issues that frame the scope of this study. The main objective of this work is to track one of the fundamental pathways between plant adaptation (quantified in terms of physiological and ecological attributes such as leaf area or root density profile) and feedbacks (quantified by plant-mediated alterations to water availability and salinity levels): root water uptake. Because root-water uptake is the main conduit connecting transpiring leaves to reservoirs of soil water, the means by which salinity modifies the processes governing its two end-points and any two-way interactions between them serves as a logical starting point. Salinity effects on leaf transpiration and photosynthesis are first explored via stomatal optimization principles that maximize carbon gain at a given water loss for autonomous leaves. Salinity directly affects leaf physiological attributes such as mesophyll conductance and photosynthetic parameters and hence over-all conductance to transpiration as well as different strategies to cope with the high salinity (e.g. through salt seclusion, compartmentation and osmotic adjustments). A coupled model of subsurface flow based on a modified Richards’ equation that accounts for the effects of increasing salinity, anaerobic conditions, water stress and compensation factors is developed. Plant water uptake is considered as a soil moisture sink term with a potential rate dictated by the carbon demands of the leaves, and an actual rate that accounts for both - hydraulic and salinity limitations. Using this model, the root distribution shape function (e.g. constant, linear, exponential, or power-law) that optimally satisfies these carbon demands and simultaneous hydraulic and salinity constraints of the soil-root system is then determined for a set of forcing variables and boundary conditions. Adaptation speeds and feedback strengths to future climatic fluctuations are explored as ‘departures’ from this equilibrium profile state.

Flow and geochemistry of groundwater beneath a back-barrier lagoon: The subterranean estuary at Chincoteague Bay, Maryland, USA

USGS Publications Warehouse

Bratton, J.F.; Böhlke, J.K.; Krantz, D.E.; Tobias, C.R.

2009-01-01

To better understand large-scale interactions between fresh and saline groundwater beneath an Atlantic coastal estuary, an offshore drilling and sampling study was performed in a large barrier-bounded lagoon, Chincoteague Bay, Maryland, USA. Groundwater that was significantly fresher than overlying bay water was found in shallow plumes up to 8??m thick extending more than 1700??m offshore. Groundwater saltier than bay surface water was found locally beneath the lagoon and the barrier island, indicating recharge by saline water concentrated by evaporation prior to infiltration. Steep salinity and nutrient gradients occur within a few meters of the sediment surface in most locations studied, with buried peats and estuarine muds acting as confining units. Groundwater ages were generally more than 50??years in both fresh and brackish waters as deep as 23??m below the bay bottom. Water chemistry and isotopic data indicate that freshened plumes beneath the estuary are mixtures of water originally recharged on land and varying amounts of estuarine surface water that circulated through the bay floor, possibly at some distance from the sampling location. Ammonium is the dominant fixed nitrogen species in saline groundwater beneath the estuary at the locations sampled. Isotopic and dissolved-gas data from one location indicate that denitrification within the subsurface flow system removed terrestrial nitrate from fresh groundwater prior to discharge along the western side of the estuary. Similar situations, with one or more shallow semi-confined flow systems where groundwater geochemistry is strongly influenced by circulation of surface estuary water through organic-rich sediments, may be common on the Atlantic margin and elsewhere.

Rise and Fall of one of World's largest deltas; the Mekong delta in Vietnam

NASA Astrophysics Data System (ADS)

Minderhoud, P. S. J.; Eslami Arab, S.; Pham, H. V.; Erkens, G.; van der Vegt, M.; Oude Essink, G.; Stouthamer, E.; Hoekstra, P.

2017-12-01

The Mekong delta is the third's largest delta in the world. It is home to almost 20 million people and an important region for the food security in South East Asia. As most deltas, the Mekong delta is the dynamic result of a balance of sediment supply, sea level rise and subsidence, hosting a system of fresh and salt water dynamics. Ongoing urbanization, industrialization and intensification of agricultural practices in the delta, during the past decades, resulted in growing domestic, agricultural and industrial demands, and have led to a dramatic increase of fresh water use. Since the year 2000, the amount of fresh groundwater extracted from the subsurface increased by 500%. This accelerated delta subsidence as the groundwater system compacts, with current sinking rates exceeding global sea level rise up to an order of magnitude. These high sinking rates have greatly altered the sediment budget of the delta and, with over 50% of the Mekong delta surface elevated less than 1 meter above sea level, greatly increase vulnerability to flooding and storm surges and ultimately, permanent inundation. Furthermore, as the increasingly larger extractions rapidly reduce the fresh groundwater reserves, groundwater salinization subsequently increases. On top of that, dry season low-flows by the Mekong river cause record salt water intrusion in the delta's estuarine system, creating major problems for rice irrigation. We present the work of three years research by the Dutch-Vietnamese `Rise and Fall' project on land subsidence and salinization in both groundwater and surface water in the Vietnamese Mekong delta.

The fault pattern in the northern Negev and southern Coastal Plain of Israel and its hydrogeological implications for groundwater flow in the Judea Group aquifer

NASA Astrophysics Data System (ADS)

Weinberger, G.; Rosenthal, E.

1994-03-01

On the basis of a broadly expanding data base, the hydrogeological properties of the Judea Group sequence in the northern Negev and southern Coastal Plain of Israel have been reassessed. The updated subsurface model is based on data derived from water- and oil-wells and on recent large-scale geophysical investigations. A new regional pattern of the reassessed geological through the subsurface of the study area has been revealed. In view of the reassessed geological and hydrological subsurface setting, it appears that the Judea Group aquifer should not be regarded as one continuous and undisturbed hydrological unit; owing to the occurrence of regional faults, its subaquifers are locally interconnected. These subaquifers, which contain mainly high-quality water, are juxtaposed, as a result of faulting, against Kurnub Group sandstones containing brackish paleowater. The latter Group is faulted against late Jurassic formations containing highly saline groundwater. In the Beer Sheva area, the Judea Group aquifer is vertically displaced against the Senonian and Eocene Mt. Scopus and Avdat Groups, which also contain brackish and saline water. In the southern Coastal Plain, major faults locally dissect also the Pleistocene Kurkar Group, facilitating inflow of Mg-rich groundwater deriving from Judea Group dolomites. The new geological evidence and its hydrogeological implications provide new solutions for previously unexplained salinization phenomena.

Coastal circulation and sediment dynamics along West Maui, Hawaii; PART IV: measurements of waves, currents, temperature, salinity and turbidity in Honolua Bay, Northwest Maui: 2003-2004

USGS Publications Warehouse

Storlazzi, Curt D.; Presto, M. Kathy

2005-01-01

High-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity were made in Honolua Bay, northwest Maui, Hawaii, during 2003 and 2004 to better understand coastal dynamics in coral reef habitats. Measurements were acquired through two different collection methods. Two hydrographic survey cruises were conducted to acquire spatially-extensive, but temporally-limited, three-dimensional measurements of currents, temperature, salinity and turbidity in the winter and summer of 2003. From mid 2003 through early 2004, a bottom-mounted instrument package was deployed in a water depth of 10 m to collect long-term, single-point high-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity. The purpose of these measurements was to collect hydrographic data to learn how waves, currents and water column properties such as water temperature, salinity and turbidity vary spatially and temporally in a near-shore coral reef system adjacent to a major stream drainage. These measurements support the ongoing process studies being conducted as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Coral Reef Project; the ultimate goal is to better understand the transport mechanisms of sediment, larvae, pollutants and other particles in coral reef settings. This report, the final part in a series, describes data acquisition, processing and analysis. Previous reports provided data and results on: Long-term measurements of currents, temperature, salinity and turbidity off Kahana (PART I), the spatial structure of currents, temperature, salinity and suspended sediment along West Maui (PART II), and flow and coral larvae and sediment dynamics during the 2003 summer spawning season (PART III).

Survival in the hot subsurface: Hydrogen stress on hyperthermophilic heterotrophs and methanogens

NASA Astrophysics Data System (ADS)

Topcuoglu, B. D.; Holden, J. F.

2017-12-01

Marine hyperthermophilic heterotrophs and methanogens belonging to the Thermococcales and Methanococcales are often found in hot subsurface environments such as hydrothermal vents, marine sediments, and oil reservoirs. This project aims to make fundamental advances in our understanding of interspecies microbe-microbe interactions in hot subsurface environments by integrating metabolic network modeling, transcriptomic analyses and continuous cultivation of hyperthermophiles and describe how heterotrophs and methanogens eliminate H2 stress. Some subsurface environments may lack alternative electron acceptors (e.g., S°) for the heterotroph and sufficient environmental flux rates to draw in fresh energy sources or remove excess metabolic products. We observed a decrease in growth rates for the H2-producer Thermococcus paralvinellae when grown with an aqueous H2 background of 65 µM relative to no added H2. Metabolite analysis showed increased formate production during H2 inhibition. Differential gene expression analyses coupled with metabolic network modeling showed that T. paralvinellae oxidized H2 and made formate by a formate hydrogenlyase to survive H2 inhibition. Low H2 concentrations (20 µM) also caused a decrease in growth and CH4 production rates for the H2-consuming methanogen Methanocaldococcus jannaschii. H2 stress in both organisms was ameliorated when the organisms were grown together syntrophically. CH4 was produced without any added H2 during syntrophic growth, and there was no formate produced by T. paralvinellae. These organisms may impact the biogeochemistry, especially natural gas production, in saline, organic-rich subsurface environments when both are present.

Something new from something old? Fracking stimulated microbial processes

NASA Astrophysics Data System (ADS)

Wrighton, K. C.; Daly, R. A.; Hoyt, D.; Trexler, R.; McRae, J.; Wilkins, M.; Mouser, P. J.

2015-12-01

Hydraulic fracturing, colloquially known as "fracking", is employed for effective gas and oil recovery in deep shales. This process injects organisms and liquids from the surface into the deep subsurface (~2500 m), exposing microorganisms to high pressures, elevated temperatures, chemical additives, and brine-level salinities. Here we use assembly-based metagenomics to create a metabolic blueprint from an energy-producing Marcellus shale well over a 328-day period. Using this approach we ask the question: What abiotic and biotic factors drive microbial metabolism and thus biogeochemical cycling during natural gas extraction? We found that after 49 days, increased salinity in produced waters corresponded to a shift in the microbial community, with only organisms that encode salinity adaptations detected. We posit that organic compatible solutes, produced by organisms adapting to increased salinity, fuels a methylamine-driven ecosystem in fractured shale. This metabolic network ultimately results in biogenic methane production from members of Methanohalophilus and Methanolobus. Proton NMR validated these genomic hypotheses, with mono-methylamine being highest in the input material, but detected throughout the sampling. Beyond abiotic constraints, our genomic investigations revealed that viruses can be linked to key members of the microbial community, potentially releasing methylamine osmoprotectants and impacting bacterial strain variation. Collectively our results indicate that adaptation to high salinity, metabolism in the absence of oxidized electron acceptors, and viral predation are controlling factors mediating microbial community metabolism during hydraulic fracturing of the deep subsurface.

Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

DOE PAGES

Hwang, C.; Copeland, A.; Lucas, Susan; ...

2015-01-22

We report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.

Trace Element Inputs to the Upper West Pacific from Nd Isotopes and Rare Earth Elements

NASA Astrophysics Data System (ADS)

Behrens, M. K.; Pahnke, K.; Schnetger, B.; Brumsack, H. J.

2015-12-01

Neodymium isotopes (143Nd/144Nd, expressed as ɛNd) and rare earth element (REE) concentrations in the ocean trace water mass transport and margin-seawater exchange processes. The distinct ɛNd and REE signatures of the lithogenic components of margin sediments of the West Pacific allow characterization of trace element inputs to the Pacific Ocean. We present dissolved ɛNdand REE concentrations from twelve vertical profiles of a transect from South Korea to Fiji. Near South Korea, surface waters are marked by unradiogenic ɛNd (as low as -7.3), high REE concentrations (e.g., Nd = 15.3 pmol/kg) and low salinity. Towards the open ocean, these parameters gradually change towards typical Pacific open ocean values (ɛNd = -3.3, [Nd] = 5.55 pmol/kg). Subsurface waters show REE depletions, followed by the typical REE increase with increasing water depth. These distributions indicate trace element input near South Korea and enhanced subsurface scavenging, as indicated by strong heavy REE to light REE fractionation. In the tropical West Pacific (10°N-15°S), high surface and subsurface water ɛNd values (+0.7) and positive Eu anomalies trace the influence of volcanic islands. Yet, absolute REE concentrations are extremely low at these depths (e.g., Nd = 2.77 pmol/kg). Using shale-normalized Nd/Er and Ho/Dy ratios, that show a much stronger surface to subsurface decrease in coastal waters compared to the open ocean, we suggest enhanced scavenging in this area. Eastward flowing intermediate waters (NPIW, AAIW) have ɛNd values up to +1.9 (NPIW) and +3.7 (AAIW) higher than those entering the tropical West Pacific from north and south, respectively. Modified ɛNd at intermediate depths and no change in REE patterns suggest that boundary exchange along volcanic island margins modifies the seawater ɛNd without changing the REE budget.

Tidal and meteorological forcing of sediment transport in tributary mudflat channels.

PubMed

Ralston, David K; Stacey, Mark T

2007-06-01

Field observations of flow and sediment transport in a tributary channel through intertidal mudflats indicate that suspended sediment was closely linked to advection and dispersion of a tidal salinity front. During calm weather when tidal forcing was dominant, high concentrations of suspended sediment advected up the mudflat channel in the narrow region between salty water from San Francisco Bay and much fresher runoff from the small local watershed. Salinity and suspended sediment dispersed at similar rates through each tidal inundation, such that during receding ebbs the sediment pulse had spread spatially and maximum concentrations had decreased. Net sediment transport was moderately onshore during the calm weather, as asymmetries in stratification due to tidal straining of the salinity front enhanced deposition, particularly during weaker neap tidal forcing. Sediment transport by tidal forcing was periodically altered by winter storms. During storms, strong winds from the south generated wind waves and temporarily increased suspended sediment concentrations. Increased discharge down the tributary channels due to precipitation had more lasting impact on sediment transport, supplying both buoyancy and fine sediment to the system. Net sediment transport depended on the balance between calm weather tidal forcing and perturbations by episodic storms. Net transport in the tributary channel was generally off-shore during storms and during calm weather spring tides, and on-shore during calm weather neap tides.

Tidal and meteorological forcing of sediment transport in tributary mudflat channels

PubMed Central

Ralston, David K.; Stacey, Mark T.

2011-01-01

Field observations of flow and sediment transport in a tributary channel through intertidal mudflats indicate that suspended sediment was closely linked to advection and dispersion of a tidal salinity front. During calm weather when tidal forcing was dominant, high concentrations of suspended sediment advected up the mudflat channel in the narrow region between salty water from San Francisco Bay and much fresher runoff from the small local watershed. Salinity and suspended sediment dispersed at similar rates through each tidal inundation, such that during receding ebbs the sediment pulse had spread spatially and maximum concentrations had decreased. Net sediment transport was moderately onshore during the calm weather, as asymmetries in stratification due to tidal straining of the salinity front enhanced deposition, particularly during weaker neap tidal forcing. Sediment transport by tidal forcing was periodically altered by winter storms. During storms, strong winds from the south generated wind waves and temporarily increased suspended sediment concentrations. Increased discharge down the tributary channels due to precipitation had more lasting impact on sediment transport, supplying both buoyancy and fine sediment to the system. Net sediment transport depended on the balance between calm weather tidal forcing and perturbations by episodic storms. Net transport in the tributary channel was generally off-shore during storms and during calm weather spring tides, and on-shore during calm weather neap tides. PMID:21499572

Seasonality of major redox constituents in a shallow subterranean estuary

NASA Astrophysics Data System (ADS)

O'Connor, Alison E.; Krask, Julie L.; Canuel, Elizabeth A.; Beck, Aaron J.

2018-03-01

The subterranean estuary (STE), the subsurface mixing zone of outflowing fresh groundwater and infiltrating seawater, is an area of extensive geochemical reactions that determine the composition of groundwater that flows into coastal environments. This study examined the porewater composition of a shallow STE (<5 m depth) in Gloucester Point, VA (USA) over two years to determine seasonal variations in dissolved organic carbon (DOC) and the reduced metabolites Fe, Mn, and sulfide. An additional aim of this study was to investigate the relative importance of salinity gradients (which have great geochemical influence in surface estuaries) versus redox gradients on STE geochemistry. Two freshwater endmembers were identified, between which redox potential and composition varied with depth-a shallow freshwater endmember was oxidizing and high in DOC, whereas a deep freshwater endmember was reducing, lower in DOC, and high in sulfide. Results showed that dissolved Fe, Mn, and sulfide varied along a redox gradient distinct from the salinity gradient, and that three-endmember mixing was required to quantify non-conservative chemical addition/removal in the STE. In addition to salinity, humic carbon was used as a quasi-conservative tracer to quantify mixing according to a three-endmember model. The vertical distributions of DOC and reduced metabolites remained approximately constant over time, but concentrations varied with season. Dissolved organic carbon concentrations were greatest in the summer, and shallow meteoric groundwater supplied the majority of DOC to the STE. In summer, there was additional evidence for shallow non-conservative addition of DOC. Dissolved Fe and Mn were highest in a subsurface plume through the middle of the STE (100-140 cm below sediment surface at the high tide line) which was characterized by higher concentrations and greater non-conservative addition in the winter. In contrast, sulfide was higher in summer at depths within the Fe and Mn plume (100-140 cm). We attribute the contrasting seasonal patterns of dissolved Fe, Mn, and sulfide to differences in microbial response to temperature changes and organic matter availability, and to competition at the ferrous-sulfidic transition zone between dissimilatory metal reduction and sulfate reduction, leading to sulfate/sulfur reducing bacteria (SRB) being more active in summer and metal reducers being more active in winter. Throughout the STE, seasonal temperature and DOC variations determined the spatial distribution and geochemical cycling of Fe, Mn, and sulfur.

Percolation pond as a method of managed aquifer recharge in a coastal saline aquifer: A case study on the criteria for site selection and its impacts

NASA Astrophysics Data System (ADS)

Christy, Raicy Mani; Lakshmanan, Elango

2017-07-01

Percolation ponds have become very popular methods of managed aquifer recharge due to their low cost, ease of construction and the participation and assistance of community. The objective of this study is to assess the feasibility of a percolation pond in a saline aquifer, north of Chennai, Tamil Nadu, India, to improve the storage and quality of groundwater. Electrical resistivity and ground penetrating radar methods were used to understand the subsurface conditions of the area. From these investigations, a suitable location was chosen and a percolation pond was constructed. The quality and quantity of groundwater of the nearby area has improved due to the recharge from the pond. This study indicated that a simple excavation without providing support for the slope and paving of the bunds helped to improve the groundwater quality. This method can be easily adoptable by farmers who can have a small pond within their farm to collect and store the rainwater. The cost of water recharged from this pond works out to be about 0.225 Re/l. Cleaning the pond by scrapping the accumulated sediments needs to be done once a year. Due to the small dimension and high saline groundwater, considerable improvement in quality at greater depths could not be achieved. However, ponds of larger size with recharge shafts can directly recharge the aquifer and help to improve the quality of water at greater depths.

Behavior of 226Ra in the Mississippi River mixing zone

NASA Astrophysics Data System (ADS)

Moore, Daniel G.; Scott, Martha R.

1986-12-01

The behavior of 226Ra in the Mississippi River mixing zone is strongly nonconservative and includes desorption similar to that reported for the Hudson, Pee Dee, and Amazon rivers. However, dissolved and desorbed 226Ra concentrations in the Mississippi are 2 to 5 times greater than in the other rivers at the same salinity. Radium concentrations vary inversely with the water discharge rate. The 226Ra desorption maximum occurs at a salinity of 5.0, much lower than the 18 to 28 salinity values for the maxima of the other three rivers. High concentrations of dissolved 226Ra (up to 82 dpm per 100 L) and the low salinity values for the desorption maximum in the Mississippi River result from three major factors. Suspended sediments include a large fraction of montmorillonite, which gives the sediment a high cation exchange capacity, 0.54 meq/g. The average suspended sediment load is large, about 510 mg/L, and contains 1.9 dpm/g desorbable 226Ra. The dissolved 226Ra river water end-member (9.6 dpm per 100 L) is higher than in surface seawater. The annual contribution of 226Ra to the ocean from the Mississippi River is 3.7 × 1014 dpm/yr, based on data from three cruises. Evidence of flux of 226Ra from estuarine and shelf sediments is common in vertical profile sampling of the deltaic waters but is not reflected in calculations made with an "apparent" river water Ra value extrapolated to zero salinity.

In situ expression of nifD in Geobacteraceae in subsurface sediments

USGS Publications Warehouse

Holmes, Dawn E.; Nevin, Kelly P.; Lovely, Derek R.

2004-01-01

In order to determine whether the metabolic state of Geobacteraceae involved in bioremediation of subsurface sediments might be inferred from levels of mRNA for key genes, in situ expression of nifD, a highly conserved gene involved in nitrogen fixation, was investigated. When Geobacter sulfurreducens was grown without a source of fixed nitrogen in chemostats with acetate provided as the limiting electron donor and Fe(III) as the electron acceptor, levels of nifD transcripts were 4 to 5 orders of magnitude higher than in chemostat cultures provided with ammonium. In contrast, the number of transcripts of recA and the 16S rRNA gene were slightly lower in the absence of ammonium. The addition of acetate to organic- and nitrogen-poor subsurface sediments stimulated the growth of Geobacteraceae and Fe(III) reduction, as well as the expression of nifD in Geobacteraceae. Levels of nifD transcripts in Geobacteraceae decreased more than 100-fold within 2 days after the addition of 100 μM ammonium, while levels of recA and total bacterial 16S rRNA in Geobacteraceae remained relatively constant. Ammonium amendments had no effect on rates of Fe(III) reduction in acetate-amended sediments or toluene degradation in petroleum-contaminated sediments, suggesting that other factors, such as the rate that Geobacteraceae could access Fe(III) oxides, limited Fe(III) reduction. These results demonstrate that it is possible to monitor one aspect of the in situ metabolic state of Geobacteraceae species in subsurface sediments via analysis of mRNA levels, which is the first step toward a more global analysis of in situ gene expression related to nutrient status and stress response during bioremediation by Geobacteraceae.

Great differences in the critical erosion threshold between surface and subsurface sediments: A field investigation of an intertidal mudflat, Jiangsu, China

NASA Astrophysics Data System (ADS)

Shi, Benwei; Wang, Ya Ping; Wang, Li Hua; Li, Peng; Gao, Jianhua; Xing, Fei; Chen, Jing Dong

2018-06-01

Understanding of bottom sediment erodibility is necessary for the sustainable management and protection of coastlines, and is of great importance for numerical models of sediment dynamics and transport. To investigate the dependence of sediment erodibility on degree of consolidation, we measured turbidity, waves, tidal currents, intratidal bed-level changes, and sediment properties on an exposed macrotidal mudflat during a series of tidal cycles. We estimated the water content of surface sediments (in the uppermost 2 cm of sediment) and sub-surface sediments (at 2 cm below the sediment surface). Bed shear stress values due to currents (τc), waves (τw), and combined current-wave action (τcw) were calculated using a hydrodynamic model. In this study, we estimate the critical shear stress for erosion using two approaches and both of them give similar results. We found that the critical shear stress for erosion (τce) was 0.17-0.18 N/m2 in the uppermost 0-2 cm of sediment and 0.29 N/m2 in sub-surface sediment layers (depth, 2 cm), as determined by time series of τcw values and intratidal bed-level changes, and values of τce, obtained using the water content of bottom sediments, were 0.16 N/m2 in the uppermost 2 cm and 0.28 N/m2 in the sub-surface (depth, 2 cm) sediment. These results indicate that the value of τce for sub-surface sediments (depth, 2 cm) is much greater than that for the uppermost sediments (depth, 0-2 cm), and that the τce value is mainly related to the water content, which is determined by the extent of consolidation. Our results have implications for improving the predictive accuracy of models of sediment transport and morphological evolution, by introducing variable τce values for corresponding sediment layers, and can also provide a mechanistic understanding of bottom sediment erodibility at different sediment depths on intertidal mudflats, as related to differences in the consolidation time.

The Effects of Temperature and Salinity on Mg Incorporation in Planktonic Foraminifera Globigerinoides ruber (white): Results from a Global Sediment Trap Mg/Ca Database

NASA Astrophysics Data System (ADS)

Gray, W. R.; Weldeab, S.; Lea, D. W.

2015-12-01

Mg/Ca in Globigerinoides ruber is arguably the most important proxy for sea surface temperature (SST) in tropical and sub tropical regions, and as such guides our understanding of past climatic change in these regions. However, the sensitivity of Mg/Ca to salinity is debated; while analysis of foraminifera grown in cultures generally indicates a sensitivity of 3 - 6% per salinity unit, core-top studies have suggested a much higher sensitivity of between 15 - 27% per salinity unit, bringing the utility of Mg/Ca as a SST proxy into dispute. Sediment traps circumvent the issues of dissolution and post-depositional calcite precipitation that hamper core-top calibration studies, whilst allowing the analysis of foraminifera that have calcified under natural conditions within a well constrained period of time. We collated previously published sediment trap/plankton tow G. ruber (white) Mg/Ca data, and generated new Mg/Ca data from a sediment trap located in the highly-saline tropical North Atlantic, close to West Africa. Calcification temperature and salinity were calculated for the time interval represented by each trap/tow sample using World Ocean Atlas 2013 data. The resulting dataset comprises >240 Mg/Ca measurements (in the size fraction 150 - 350 µm), that span a temperature range of 18 - 28 °C and 33.6 - 36.7 PSU. Multiple regression of the dataset reveals a temperature sensitivity of 7 ± 0.4% per °C (p < 2.2*10-16) and a salinity sensitivity of 4 ± 1% per salinity unit (p = 2*10-5). Application of this calibration has significant implications for both the magnitude and timing of glacial-interglacial temperature changes when variations in salinity are accounted for.

Integrating surface and borehole geophysics in ground water studies - an example using electromagnetic soundings in south Florida

USGS Publications Warehouse

Paillet, Frederick; Hite, Laura; Carlson, Matthew

1999-01-01

Time domain surface electromagnetic soundings, borehole induction logs, and other borehole logging techniques are used to construct a realistic model for the shallow subsurface hydraulic properties of unconsolidated sediments in south Florida. Induction logs are used to calibrate surface induction soundings in units of pore water salinity by correlating water sample specific electrical conductivity with the electrical conductivity of the formation over the sampled interval for a two‐layered aquifer model. Geophysical logs are also used to show that a constant conductivity layer model is appropriate for the south Florida study. Several physically independent log measurements are used to quantify the dependence of formation electrical conductivity on such parameters as salinity, permeability, and clay mineral fraction. The combined interpretation of electromagnetic soundings and induction logs was verified by logging three validation boreholes, confirming quantitative estimates of formation conductivity and thickness in the upper model layer, and qualitative estimates of conductivity in the lower model layer.

Combined electromagnetic geophysical mapping at Arctic perennial saline springs: Possible applications for the detection of water in the shallow subsurface of Mars

NASA Astrophysics Data System (ADS)

Samson, C.; Mah, J.; Haltigin, T.; Holladay, S.; Ralchenko, M.; Pollard, W.; Monteiro Santos, F. A.

2017-05-01

Perennial springs at the Gypsum Hill site on Axel Heiberg Island in the Canadian Arctic (79°24‧N, 90°44‧W) represent a high-fidelity analogue to hydrothermal systems that might exist on Mars. The springs were surveyed using an electromagnetic induction sounder (EMIS) and ground penetrating radar (GPR). Both instruments probed the subsurface to a depth of approximately 3 m. Lateral EMIS soundings were performed every metre along a 400 m long reconnaissance line roughly oriented SW-NE and extending through 23 active springs and 1 dry outlet to measure electrical conductivity. Two distinct zones were identified within the survey area on the basis of these data: in the southwest portion, sharp conductivity peaks correspond to isolated springs with well-defined outlets, flowing over dry rocky soil; in the northeast portion, the springs are fed by a pervasive network of saline fluids, resulting in high background readings and muddy surface conditions. These observations are consistent with vertical EMIS sounding data which showed that the brine body feeding the saline springs can be found closer to the ground surface towards the northeast portion of the survey site. In areas of high electrical conductivity, the GPR data exhibits strong scattering. The noisy areas are sharply defined and interpreted to correspond to narrow vertical conduits feeding individual spring outlets. The EMIS is a rugged instrument that could be included as payload in future rover-based Mars exploration missions aiming at probing the shallow subsurface for the presence of brine pockets.

Seasonal spreading of the Persian Gulf Water mass in the Arabian Sea

NASA Astrophysics Data System (ADS)

Prasad, T. G.; Ikeda, M.; Kumar, S. Prasanna

2001-08-01

The characteristics of the subsurface salinity maximum associated with the Persian Gulf Water mass (PGW) are used to quantify the spreading and mixing of PGW in the thermocline of the Arabian Sea based on a bimonthly climatology of temperature and salinity. Examination of the seasonal cycles of heat and freshwater fluxes in the Persian Gulf region indicates that PGW forms as a result of elevated evaporative cooling in conjunction with reduced insolation during winter. Maps are presented of the distributions of depth, salinity, and geostrophic flow on σθ = 26.5, which nearly coincides with the core of the PGW. After intense mixing in the Strait of Hormuz, the property fields suggest that warm (>17°C) and high-salinity (>36.2 psu) PGW enters the Arabian Sea to form a subsurface salinity extremum between 200 and 300 m. We have found variability in the distribution of PGW in the Arabian Sea associated with monsoonal changes in the Arabian Sea circulation. During the winter monsoon, there is southward spreading of PGW along the western boundary; during summer it is not present. Lateral mixing with low-salinity water from the Bay of Bengal in the region south of 10°N and along the west coast of India during winter accounts for changes in the characteristics of PGW along these paths. Associated with the Findlater Jet during summer, the entire thermohaline structure is vertically displaced along the coasts of Somalia and Arabia. Ekman convergence in the central Arabian Sea accounts for deepening of the PGW. Either lateral or vertical mixing would cause changes in PGW properties in these regions. During this time, PGW spreads predominantly southward along the central Arabian Sea, as indicated by a tongue of high salinity.

Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s “species minimum” concept

PubMed Central

Kristoffersen, Jon B.; Oulas, Anastasis; De Troch, Marleen; Arvanitidis, Christos

2017-01-01

Several models have been developed for the description of diversity in estuaries and other brackish habitats, with the most recognized being Remane’s Artenminimum (“species minimum”) concept. It was developed for the Baltic Sea, one of the world’s largest semi-enclosed brackish water body with a unique permanent salinity gradient, and it argues that taxonomic diversity of macrobenthic organisms is lowest within the horohalinicum (5 to 8 psu). The aim of the present study was to investigate the relationship between salinity and sediment microbial diversity at a freshwater-marine transect in Amvrakikos Gulf (Ionian Sea, Western Greece) and assess whether species composition and community function follow a generalized concept such as Remane’s. DNA was extracted from sediment samples from six stations along the aforementioned transect and sequenced for the 16S rRNA gene using high-throughput sequencing. The metabolic functions of the OTUs were predicted and the most abundant metabolic pathways were extracted. Key abiotic variables, i.e., salinity, temperature, chlorophyll-a and oxygen concentration etc., were measured and their relation with diversity and functional patterns was explored. Microbial communities were found to differ in the three habitats examined (river, lagoon and sea) with certain taxonomic groups being more abundant in the freshwater and less in the marine environment, and vice versa. Salinity was the environmental factor with the highest correlation to the microbial community pattern, while oxygen concentration was highly correlated to the metabolic functional pattern. The total number of OTUs showed a negative relationship with increasing salinity, thus the sediment microbial OTUs in this study area do not follow Remane’s concept. PMID:29043106

Microbial Biogeography on the Legacies of Historical Events in the Arctic Subsurface Sediments

NASA Astrophysics Data System (ADS)

Han, Dukki; Nam, Seung-Il; Hur, Hor-Gil

2017-04-01

The Arctic marine environment consists of various microbial habitats. The niche preference of microbial assemblages in the Arctic Ocean has been surveyed with the modern environmental change by oceanographic traits such as sea-ice dynamics, current circulation, and sedimentation. The North Pacific inflow from the shallow and narrow Bering Strait is highly susceptible to sea-level fluctuations, and thus the water mass exchange mediated by the history of sea-ice between the North Pacific and the Chukchi Sea in the Arctic Ocean. Over geological timescale, the climate change may provide putative evidences for ecological niche for the Arctic microbial assemblages as well as geological records in response to the paleoclimate change. In the present study, the multidisciplinary approach, based on microbiology, geology, and geochemistry, was applied to survey the microbial assemblages in the Arctic subsurface sediments and help further integrate the microbial biogeography and biogeochemical patterns in the Arctic subsurface biosphere. Our results describe microbial assemblages with high-resolution paleoceanographic records in the Chukchi Sea sediment core (ARA02B/01A-GC; 5.4 mbsf) to show the processes that drive microbial biogeographic patterns in the Arctic subsurface sediments. We found microbial habitat preferences closely linked to Holocene paleoclimate records as well as geological, geochemical, and microbiological evidence for the inference of the sulphate-methane transition zone (SMTZ) in the Chukchi Sea. Especially, the vertically distributed predominant populations of Gammaproteobacteria and Marine Group II Euryarchaeota in the ARA02B/01A-GC consistent with the patterns of the known global SMTZs and Holocene sedimentary records, suggesting that in-depth microbiological profiles integrated with geological records may be indirectly useful for reconstructing Arctic paleoclimate changes. In the earliest phase of Mid Holocene in the ARA02B/01A-GC with concentrated crenarchaeol (a unique biomarker for Marine Group I Thaumarchaea), the most abundant archaeal population was Marine Group II Euryarchaeota rather than Marine Group I Thaumarchaea, suggesting that the interpretation of archaeal tetraether lipids in subsurface sediments needs careful consideration for paleoceanography. In conclusion, our findings have important implications for the availability of microbial biogeography in the sedimentary record. The present study offers a deeper understanding of the legacies of historical events during the Holocene and implies that the survey of microbial biogeography may be an appropriate tool to monitor potential effects from the climate change in the Arctic Ocean.

Geophysical evaluation of sandstone aquifers in the Reconcavo-Tucano Basin, Bahia -- Brazil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lima, O.A.L. de

1993-11-01

The upper clastic sediments in the Reconcavo-Tucano basin comprise a multilayer aquifer system of Jurassic age. Its groundwater is normally fresh down to depths of more than 1,000 m. Locally, however, there are zones producing high salinity or sulfur geothermal water. Analysis of electrical logs of more than 150 wells enabled the identification of the most typical sedimentary structures and the gross geometries for the sandstone units in selected areas of the basin. Based on this information, the thick sands are interpreted as coalescent point bars and the shales as flood plain deposits of a large fluvial environment. The resistivitymore » logs and core laboratory data are combined to develop empirical equations relating aquifer porosity and permeability to log-derived parameters such as formation factor and cementation exponent. Temperature logs of 15 wells were useful to quantify the water leakage through semiconfining shales. The groundwater quality was inferred from spontaneous potential (SP) log deflections under control of chemical analysis of water samples. An empirical chart is developed that relates the SP-derived water resistivity to the true water resistivity within the formations. The patterns of salinity variation with depth inferred from SP logs were helpful in identifying subsurface flows along major fault zones, where extensive mixing of water is taking place. A total of 49 vertical Schlumberger resistivity soundings aid in defining aquifer structures and in extrapolating the log derived results. Transition zones between fresh and saline waters have also been detected based on a combination of logging and surface sounding data. Ionic filtering by water leakage across regional shales, local convection and mixing along major faults and hydrodynamic dispersion away from lateral permeability contrasts are the main mechanisms controlling the observed distributions of salinity and temperature within the basin.« less

Anomalous porosity preservation and preferential accumulation of gas hydrate in the Andaman accretionary wedge, NGHP-01 site 17A

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rose, Kelly K.; Johnson, Joel E.; Torres, Marta E.

In addition to well established properties that control the presence or absence of the hydrate stability zone, such as pressure, temperature, and salinity, additional parameters appear to influence the concentration of gas hydrate in host sediments. The stratigraphic record at Site 17A in the Andaman Sea, eastern Indian Ocean, illustrates the need to better understand the role pore-scale phenomena play in the distribution and presence of marine gas hydrates in a variety of subsurface settings. In this paper we integrate field-generated datasets with newly acquired sedimentology, physical property, imaging and geochemical data with mineral saturation and ion activity products ofmore » key mineral phases such as amorphous silica and calcite, to document the presence and nature of secondary precipitates that contributed to anomalous porosity preservation at Site 17A in the Andaman Sea. This study demonstrates the importance of grain-scale subsurface heterogeneities in controlling the occurrence and distribution of concentrated gas hydrate accumulations in marine sediments, and document the importance that increased permeability and enhanced porosity play in supporting gas concentrations sufficient to support gas hydrate formation. The grain scale relationships between porosity, permeability, and gas hydrate saturation documented at Site 17A likely offer insights into what may control the occurrence and distribution of gas hydrate in other sedimentary settings.« less

Messinian Salinity Crisis and basin fluid flow

NASA Astrophysics Data System (ADS)

Bertoni, Claudia; Cartwight, Joe

2014-05-01

Syn- and post-depositional movement of fluids through sediments is one of the least understood aspects in the evolution of a basin. The conventional hydrostratigraphic view on marine sedimentary basins assumes that compactional and meteoric groundwater fluid circulation drives fluid movement and defines its timing. However, in the past few years, several examples of instantaneous and catastrophic release of fluids have been observed even through low-permeability sediments. A particularly complex case-study involves the presence of giant salt bodies in the depocentres of marine basins. Evaporites dramatically change the hydrostratigraphy and fluid-dynamics of the basin, and influence the P/T regimes, e.g. through changes in the geothermal gradient and in the compaction of underlying sediments. Our paper reviews the impact of the Messinian Salinity Crisis (MSC) and evaporites on fluid flow in the Mediterranean sub-basins. The analysis of geological and geophysical sub-surface data provides examples from this basin, and the comparison with analogues in other well-known evaporitic provinces. During the MSC, massive sea-level changes occurred in a relatively limited time interval, and affected the balance of fluid dynamics, e.g. with sudden release or unusual trapping of fluids. Fluid expulsion events are here analysed and classified in relation to the long and short-term effects of the MSC. Our main aim is to build a framework for the correct identification of the fluid flow-related events, and their genetic mechanisms. On basin margins, where evaporites are thin or absent, the sea-level changes associated with the MSC force a rapid basinward shift of the mixing zone of meteoric/gravity flow and saline/compactional flow, 100s-km away from its pre-MSC position. This phenomenon changes the geometry of converging flows, creates hydraulic traps for fluids, and triggers specific diagenetic reactions in pre-MSC deep marine sediments. In basin-centre settings, unloading and re-loading of water associated to the sea-level changes leads to the sudden release of focused fluids, enhancing pockmark formation, evaporite dissolution, gas-hydrate dissociation and methane venting. After the MSC, and in the long-term basin evolution, the aquitard effect of the thick evaporites also created favourable condition for the development of overpressures in the pre-MSC sediments. However, the traditional view of saline giants as impermeable barriers to fluid flow has been challenged in recent years, by the documented evidence of fluid migration pathways through thick evaporites. Ultimately, these events can lead not only to fluid, but also to sediment remobilisation. The review here presented has applications as a tool for identifying, quantifying and understanding controls and timing of fluid dynamics in marine basins hosting extensive evaporitic series.

Integral assessment of estrogenic potentials in sediment-associated samples: Part 2: Study of estrogen and anti-estrogen receptor-binding potentials of sediment-associated chemicals under different salinity conditions using the salinity-adapted enzyme-linked receptor assay.

PubMed

Kase, Robert; Hansen, Peter D; Fischer, Birgit; Manz, Werner; Heininger, Peter; Reifferscheid, Georg

2009-01-01

The enzyme-linked receptor assay (ELRA) detects estrogenic and anti-estrogenic effects at the molecular level of receptor binding and is a useful tool for the integrative assessment of ecotoxicological potentials caused by hormonally active agents (HAA) and endocrine disrupting compounds (EDC). The main advantage of the ELRA is its high sample throughput and its robustness against cytotoxicity and microbial contamination. After a methodological adaptation to salinity of the ELRA, according to the first part of this study, which increased its salinity tolerance and sensitivity for 17-beta-estradiol, the optimised ELRA was used to investigate 13 native sediments characterised by different levels of salinity and chemical contamination. The applicability of the ELRA for routine analysis in environmental assessment was evaluated. Salinity is often a critical factor for bioassays in ecotoxicological sediment assessment. Therefore, salinity of the samples was additionally adjusted to different levels to characterise its influence on elution and binding processes of receptor-binding substances. The ELRA was carried out with the human estrogen receptor alpha (ER) in a 96-well microplate format using the experimental setup known from the competitive immunoassay based on ligand-protein interaction. It is an important improvement that a physiologically relevant receptor was used as a linking protein instead of an antibody. The microplates were coated with a 17-beta-estradiol-BSA conjugate, and dilution series of estradiol and of native sediment samples were added and incubated with the ER. After a washing step, a biotinylated mouse anti-ER antibody was added to each well. Receptor binding to estradiol, agonistic and antagonistic receptor binding, were determined by a streptavidin-POD-biotin complex with subsequent measurement of the peroxidase activity at the wavelength of 450 nm using a commercial ELISA multiplate reader. The sediment elutriates and pore water samples of sediments were tested in a dilution series to evaluate at which dilution step the receptor-binding potential ends. In the elution process (see Section 2.1 to 2.2), a method was developed to adjust the salinity to the levels of the reference testings, which offers an appropriate option to adjust the salinity in both directions. Statistical evaluation was made with a combination of the Mann-Whitney U test and the pT-method. This part of the study characterised the environmental factor 'salinity' for prospective applications of the ELRA. Using reference substances such as 17-beta-estradiol, the ELRA showed sigmoid concentration-effect relations over a broad range from 0.05 mug/l to 100 mug/l under physiological conditions. After methodological optimisation, both sensitivity and tolerance of the assay against salinity could be significantly raised, and the ELRA became applicable under salinity conditions up to concentrations of 20.5 per thousand. The mean relative inter-test error (n = 3) was around 11% with reference substances and below 5% for single sediments elutriates in three replicates each. For sediment testings, the pore water and different salinity-adjusted elutriates of 13 sediments were used. A clear differentiation of the receptor-binding potential could be reached by application of the pT-method. Thereby, pT-values from one to six could be assigned to the sediments, and the deviation caused by the different salinity conditions was one pT-value. The mean standard deviation in the salinity adaptation procedure of the elutriates was below 5%. Although the ELRA has already been used for assessments of wastewater, sludge and soil, its applicability for samples to different salinity levels has not been investigated so far. Even if the ELRA is not as sensitive as the E-screen or the YES-assay, with regard to reference substances like 17-beta-estradiol, it is a very useful tool for pre-screening, because it is able to integrate both estrogenic as well as anti-estrogenic receptor-binding effects. According to the results of sediment testing, and given the integrative power to detect different directions of effects, the ELRA shows sufficient sensitivity and salinity tolerance to discriminate receptor-binding potentials in environmental samples. The optimised ELRA assay is a fast, cost-effective, reliable and highly reproducible tool that can be used for high-throughput screening in a microplate format in detecting both estrogenic and anti-estrogenic effects. Additionally, the ELRA is robust against microbial contaminations, and is not susceptible towards cytotoxic interferences like the common cell-culture methods. The general applicability and sufficient sensitivity of the ELRA was shown in freshwater environments. Marine and brackish samples can be measured up to salinity levels of 20.5 per thousand. In view of the proven sensitivity, functionality and the fastness of the ELRA, it is recommendable to standardise the test method. At the moment, no adequate in vitro test procedure exists which is standardised to DIN or ISO levels. The E-screen and the yeast estrogen/androgen screens (YES/YAS) sometimes underlie strong cytotoxic effects, as reported in the first part of this study. Further development of an ELRA assay using human androgen receptors appears to be very promising to gain information about androgenic and anti-androgenic effects, too. This would offer a possibility to use the ELRA as a fast and reliable pre-screening tool for the detection of endocrine potentials, thus minimising time and cost-expensive animal experiments.

Dietary assimilation of cadmium associated with bacterial exopolymer sediment coatings by the estuarine amphipod Leptocheirus plumulosus: Effects of Cd concentration and salinity

USGS Publications Warehouse

Schlekat, C.E.; Decho, Alan W.; Chandler, G.T.

1999-01-01

Bacterial extracellular substances (also known as exopolysaccharides, or EPS) may serve as vectors for trophic transfer of metals in benthic systems because these ubiquitous sediment coatings can sorb high concentrations of toxic metals, and because many benthic invertebrates assimilate EPS sediment coatings upon ingestion. We conducted 3 sets of experiments to determine the assimilative bioavailability of EPS-associated Cd to the benthic amphipod Leptocheirus plumulosus as a function of Cd concentration and salinity. Bioavailability was measured as L. plumulosus Cd assimilation efficiency (AE) from EPS-coated silica (EPS-Si) and from uncoated silica (NC-Si) using modified pulse-chase methods with the gamma-emitting radioisotope 109Cd. Cd AE was significantly greater from NC-Si than from EPS-Si at 7.5???, but not at 2.5 or 25???. Overall, Cd AE from EPS-Si was between 15.1 and 21.5%. Because EPS-Si sorbed more Cd than NC-Si, EPS coatings magnified the amount of Cd amphipods accumulated at each salinity by up to a factor of 10. Salinity did not directly affect Cd AE from EPS-Si, but because Cd-EPS partitioning increased with decreasing salinity, amphipods accumulated more Cd from EPS at the lowest Cd-EPS incubation salinity (2.5 ???) than at higher salinities (7.5 and 25 ???). Finally, Cd concentration in EPS exhibited an inverse relationship with Cd AE at 2.5 ???, but not at 25 ???. Specifically, Cd AE was 12 times greater at 1 compared with 10 ??g Cd ??g-1 EPS. Together, these results show that estuarine benthos can accumulate Cd from EPS sediment coatings, but that the degree to which this phenomenon occurs is dependent upon seawater salinity and Cd concentration in EPS.

Physical forcing of late summer chlorophyll a blooms in the oligotrophic eastern North Pacific

NASA Astrophysics Data System (ADS)

Toyoda, Takahiro; Okamoto, Suguru

2017-03-01

We investigated physical forcing of late summer chlorophyll a (chl a) blooms in the oligotrophic eastern North Pacific Ocean by using ocean reanalysis and satellite data. Relatively large chl a blooms as defined in this study occurred in August-October following sea surface temperature (SST) anomaly (SSTA) decreases, mixed layer deepening, and temperature and salinity increases at the bottom of the mixed layer. These physical conditions were apparently induced by the entrainment of subsurface water resulting from the destabilization of the surface layer caused by anomalous northward Ekman transport of subtropical waters of higher salinity. Salinity-normalized total alkalinity data provide supporting evidence for nutrient supply by the entrainment process. We next investigated the impact of including information about the entrainment on bloom identification. The results of analyses using reanalysis data and of those using only satellite data showed large SSTA decreases when the northward Ekman salinity transports were large, implying that the entrainment of subsurface water is well represented in both types of data. After surface-destabilizing conditions were established, relatively high surface chl a concentrations were observed. The use of SST information can further improve the detection of high chl a concentrations. Although the detection of high chl a concentrations would be enhanced by finer data resolution and the inclusion of biogeochemical parameters in the ocean reanalysis, our results obtained by using existing reanalysis data as well as recent satellite data are valuable for better understanding and prediction of lower trophic ecosystem variability.

Infiltration of late Palaeozoic evaporative brines in the reelfoot rift: A possible salt source for Illinois Basin formation waters and MVT mineralizing fluids

USGS Publications Warehouse

Rowan, E.L.; De Marsily, G.

2001-01-01

Salinities and homogenization temperatures of fluid inclusions in Mississippi Valley-type (MVT) deposits provide important insights into the regional hydrology of the Illinois basin/Reelfoot rift system in late Palaeozoic time. Although the thermal regime of this basin system has been plausibly explained, the origin of high salinities in the basin fluids remains enigmatic. Topographically driven flow appears to have been essential in forming these MVT districts, as well as many other districts worldwide. However, this type of flow is recharged by fresh water making it difficult to account for the high salinities of the mineralizing fluids over extended time periods. Results of numerical experiments carried out in this study provide a possible solution to the salinity problem presented by the MVT zinc-lead and fluorite districts at the margins of the basin system. Evaporative concentration of surface water and subsequent infiltration into the subsurface are proposed to account for large volumes of brine that are ultimately responsible for mineralization of these districts. This study demonstrates that under a range of geologically reasonable conditions, brine infiltration into an aquifer in the deep subsurface can coexist with topographically driven flow. Infiltration combined with regional flow and local magmatic heat sources in the Reelfoot rift explain the brine concentrations as well as the temperatures observed in the Southern Illinois and Upper Mississippi Valley districts.

Use of Mössbauer spectroscopy to determine the effect of salinity on the speciation of triorganotins in Anacostia River sediments

NASA Astrophysics Data System (ADS)

Eng, George; Song, Xueqing; May, Leopold

2006-06-01

The speciation of several tributyltin and triphenyltin compounds under varying salinity conditions (0, 20, 40 and 60%) was studied by Mössbauer spectroscopy in both anaerobic and aerobic Anacostia River sediments. The Mössbauer spectral parameters of the spiked sediments indicated that changes in the salinity did not affect the speciation of the tin compounds in either aerobic or anaerobic sediments.

Use of Mössbauer spectroscopy to determine the effect of salinity on the speciation of triorganotins in Anacostia River sediments

NASA Astrophysics Data System (ADS)

Eng, George; Song, Xueqing; May, Leopold

The speciation of several tributyltin and triphenyltin compounds under varying salinity conditions (0, 20, 40 and 60%) was studied by Mössbauer spectroscopy in both anaerobic and aerobic Anacostia River sediments. The Mössbauer spectral parameters of the spiked sediments indicated that changes in the salinity did not affect the speciation of the tin compounds in either aerobic or anaerobic sediments.

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nguyen, Hung D.; Cao, Bin; Mishra, Bhoopesh

2012-01-01

The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000more » μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state.« less

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium.

PubMed

Nguyen, Hung Duc; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk

2012-01-01

The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000 μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state. Copyright © 2011 Elsevier Ltd. All rights reserved.

Geochemical processes controlling water salinization in an irrigated basin in Spain: identification of natural and anthropogenic influence.

PubMed

Merchán, D; Auqué, L F; Acero, P; Gimeno, M J; Causapé, J

2015-01-01

Salinization of water bodies represents a significant risk in water systems. The salinization of waters in a small irrigated hydrological basin is studied herein through an integrated hydrogeochemical study including multivariate statistical analyses and geochemical modeling. The study zone has two well differentiated geologic materials: (i) Quaternary sediments of low salinity and high permeability and (ii) Tertiary sediments of high salinity and very low permeability. In this work, soil samples were collected and leaching experiments conducted on them in the laboratory. In addition, water samples were collected from precipitation, irrigation, groundwater, spring and surface waters. The waters show an increase in salinity from precipitation and irrigation water to ground- and, finally, surface water. The enrichment in salinity is related to the dissolution of soluble mineral present mainly in the Tertiary materials. Cation exchange, precipitation of calcite and, probably, incongruent dissolution of dolomite, have been inferred from the hydrochemical data set. Multivariate statistical analysis provided information about the structure of the data, differentiating the group of surface waters from the groundwaters and the salinization from the nitrate pollution processes. The available information was included in geochemical models in which hypothesis of consistency and thermodynamic feasibility were checked. The assessment of the collected information pointed to a natural control on salinization processes in the Lerma Basin with minimal influence of anthropogenic factors. Copyright © 2014 Elsevier B.V. All rights reserved.

Near-bed observations of high-concentration sediment transport in the Changjiang Estuary

NASA Astrophysics Data System (ADS)

Zhou, Z.; Ge, J.; Ding, P.

2017-12-01

The North Passage, the core of turbidity maximum in the Changjiang Estuary, is now under the strong sedimentation due to the abundant sediment supply from the upstream Changjiang River and the river-tide interacted dynamics. Recent studies suggested that strong siltation could be attributed to bottom high-concentration sediment transport, which however is very difficult to be detected and observed by vessel-anchored survey methods. To better understand the mechanisms of sediment transport and deposition in the channel region of the North Passage and its adjacent areas, we conducted continuous field observations which covered spring and neap tide period in the wintertime of 2016, the summertime of 2015 and 2017, focusing on near-bottom sediment transport. Tripods mounted with multiple instruments, including up-looking and down-looking Acoustic Doppler Current Profilers(ADCP), Vector Current Meter(ADV), Optical Backscatter Sensor(OBS), ASM, ALEC and RBR were used to observe the near-bottom physical process and its induced sediment dynamics. Results of these observations clearly described the current-wave-sediment interaction, which produced different patterns of bottom mud suspension at different tripods. Both hydrodynamic features and suspended sediment showed variations between spring and neap tide. Taking data of 2016 as an example, averaged suspended sediment concentration(SSC) at two tripods was 1.52 g/L and 2.13 g/L during the neap tide, 4.51 g/L and 5.75 g/L with the peak value reaching 25 g/L during the spring tide. At the tripod which was closer to the channel region, three peaks of SSC during the spring tide occurred near the flood slack with notable salinity increase, indicating the impact of saltwater intrusion on the bottom hydrodynamics. The results showed the occurrence of high-concentration suspended sediment was probably related to combined effects of bottom salinity intrusion, turbulent kinetic energy(TKE) and local stratification due to density gradient from intruded salinity and local sediment suspension. Meanwhile, tripods' monitoring identified a significant cross-channel component of residual current, which could produce potential bottom sediment accumulation in the channel region within the North Passage.

Partitioning of Total Dissolved Salts, Boron and Selenium in Pariette Wetland Water, Sediments and Benthic Organisms

NASA Astrophysics Data System (ADS)

Jacobson, A. R.; Jones, C. P.; Vasudeva, P.; Powelson, D.; Grossl, P.

2014-12-01

The Pariette Wetlands located in the Uinta Basin, UT, were developed by the BLM in part to mitigate salinity associated with irrigation drainage and runoff from flowing to the Green River, a tributary of the Colorado River. The wetlands are fed by runoff from upstream agricultural irrigation, and natural subsurface and overland flow through the Uintah formation, which is seleniferous, and saline. Concentrations of Total Dissolved Salts (TDS), boron (B) and selenium (Se) in the wetlands exceed the total maximum daily loads developed to meet the US EPA's water quality planning and management regulations (40CFR 130). This is of concern because the wetlands are home to populations of migratory birds, waterfowl, raptors, and numerous small mammals. A mass balance of the Se concentrations of water flowing into and out of the wetlands indicates that 80% of the Se is stored or lost within the system. Additional data suggest that the majority of the Se is associated with the sediments. Little information is available regarding the TDS and B. Therefore we will determine the whether B and other salts are accumulating in the wetland systems, and if so where. We sampled water, sediment, benthic organisms, and wetland plants, in 4 of the 23 ponds from the flood control inlet to water flowing out to the Green River. Sediments were collected at 3 depths (0-2 cm, 2-7 cm, and 7+ cm) at 3-4 locations within each pond including the inlet, outlet and at least one site near a major wetland plant community. Benthic organisms were sampled from the 0-2 cm and 2-7 cm sediment layers. Sediment and organism samples were digested with HNO3 and HClO4 prior to analysis of total Se by HGAAS. Hot water extractable B and DPTA extractable B were analyzed by ICP-AES. TDS was estimated from EC in the sediment and organisms extracts and direct analysis in the water. Preliminary results found that Se in the sediments decreases with depth. Se concentrations in the benthic organisms is approximately 4 times higher than in the associated sediments. Data from this study will contribute to a water quality risk assessment to the wetland fish and birds.

Effect of temperature and salinity on phosphate sorption on marine sediments.

PubMed

Zhang, Jia-Zhong; Huang, Xiao-Lan

2011-08-15

Our previous studies on the phosphate sorption on sediments in Florida Bay at 25 °C in salinity 36 seawater revealed that the sorption capacity varies considerably within the bay but can be attributed to the content of sedimentary P and Fe. It is known that both temperature and salinity influence the sorption process and their natural variations are the greatest in estuaries. To provide useful sorption parameters for modeling phosphate cycle in Florida Bay, a systematic study was carried out to quantify the effects of salinity and temperature on phosphate sorption on sediments. For a given sample, the zero equilibrium phosphate concentration and the distribution coefficient were measured over a range of salinity (2-72) and temperature (15-35 °C) conditions. Such a suite of experiments with combinations of different temperature and salinity were performed for 14 selected stations that cover a range of sediment characteristics and geographic locations of the bay. Phosphate sorption was found to increase with increasing temperature or decreasing salinity and their effects depended upon sediment's exchangeable P content. This study provided the first estimate of the phosphate sorption parameters as a function of salinity and temperature in marine sediments. Incorporation of these parameters in water quality models will enable them to predict the effect of increasing freshwater input, as proposed by the Comprehensive Everglades Restoration Plan, on the seasonal cycle of phosphate in Florida Bay.

Geochemical Effects of Millimolar Hydrogen Concentrations in Groundwater: An Experimental Study in the Context of Subsurface Hydrogen Storage.

PubMed

Berta, Marton; Dethlefsen, Frank; Ebert, Markus; Schäfer, Dirk; Dahmke, Andreas

2018-04-17

Hydrogen storage in geological formations is one of the most promising technologies for balancing major fluctuations between energy supply from renewable energy plants and energy demand of customers. If hydrogen gas is stored in a porous medium or if it leaks into a shallow aquifer, redox reactions can oxidize hydrogen and reduce electron acceptors such as nitrate, Fe III and Mn IV (hydro)oxides, sulfate, and carbonate. These reactions are of key significance, because they can cause unintentional losses in hydrogen stored in porous media and they also can cause unwanted changes in the composition of protected potable groundwater. To represent an aquifer environment enclosing a hydrogen plume, laboratory experiments using sediment-filled columns were constructed and percolated by groundwater in equilibrium with high (2-15 bar) hydrogen partial pressures. Here, we show that hydrogen is consumed rapidly in these experiments via sulfate reduction (18 ± 5 μM h -1 ) and acetate production (0.030 ± 0.006 h -1 ), while no methanogenesis took place. The observed reaction rates were independent from the partial pressure of hydrogen and hydrogen consumption only stopped in supplemental microcosm experiments where salinity was increased above 35 g L -1 . The outcomes presented here are implemented for planning the sustainable use of the subsurface space within the ANGUS+ project.

Evidence for high salinity of Early Cretaceous sea water from the Chesapeake Bay crater

USGS Publications Warehouse

Sanford, Ward E.; Doughten, Michael W.; Coplen, Tyler B.; Hunt, Andrew G.; Bullen, Thomas D.

2013-01-01

High salinity groundwater more than 1000 metres deep in the Atlantic Coastal Plain of the United States has been documented in several locations1,2, most recently within the 35 million-year-old Chesapeake Bay impact crater3,4,5. Suggestions for the origin of increased salinity in the crater have included evaporite dissolution6, osmosis6, and evaporation from heating7 associated with the bolide impact. Here we present chemical, isotopic and physical evidence that together indicate that groundwater in the Chesapeake crater is remnant Early Cretaceous North Atlantic (ECNA) seawater. We find that the seawater is likely 100-145 million years old and that it has an average salinity of about 70 per mil, which is twice that of modern seawater and consistent with the nearly closed ECNA basin8. Previous evidence for temperature and salinity levels of ancient oceans have been estimated indirectly from geochemical, isotopic and paleontological analyses of solid materials in deep sediment cores. In contrast, our study identifies ancient seawater in situ and provides a direct estimate of its age and salinity. Moreover, we suggest that it is likely that remnants of ECNA seawater persist in deep sediments at many locations along the Atlantic margin.

Evidence for high salinity of Early Cretaceous sea water from the Chesapeake Bay crater.

PubMed

Sanford, Ward E; Doughten, Michael W; Coplen, Tyler B; Hunt, Andrew G; Bullen, Thomas D

2013-11-14

High-salinity groundwater more than 1,000 metres deep in the Atlantic coastal plain of the USA has been documented in several locations, most recently within the 35-million-year-old Chesapeake Bay impact crater. Suggestions for the origin of increased salinity in the crater have included evaporite dissolution, osmosis and evaporation from heating associated with the bolide impact. Here we present chemical, isotopic and physical evidence that together indicate that groundwater in the Chesapeake crater is remnant Early Cretaceous North Atlantic (ECNA) sea water. We find that the sea water is probably 100-145 million years old and that it has an average salinity of about 70 per mil, which is twice that of modern sea water and consistent with the nearly closed ECNA basin. Previous evidence for temperature and salinity levels of ancient oceans have been estimated indirectly from geochemical, isotopic and palaeontological analyses of solid materials in deep sediment cores. In contrast, our study identifies ancient sea water in situ and provides a direct estimate of its age and salinity. Moreover, we suggest that it is likely that remnants of ECNA sea water persist in deep sediments at many locations along the Atlantic margin.

Sedimentary archaeal amoA gene abundance reflects historic nutrient level and salinity fluctuations in Qinghai Lake, Tibetan Plateau

PubMed Central

Yang, Jian; Jiang, Hongchen; Dong, Hailiang; Hou, Weiguo; Li, Gaoyuan; Wu, Geng

2015-01-01

Integration of DNA derived from ancient phototrophs with their characteristic lipid biomarkers has been successfully employed to reconstruct paleoenvironmental conditions. However, it is poorly known that whether the DNA and lipids of microbial functional aerobes (such as ammonia-oxidizing archaea: AOA) can be used for reconstructing past environmental conditions. Here we identify and quantify the AOA amoA genes (encoding the alpha subunit of ammonia monooxygenases) preserved in a 5.8-m sediment core (spanning the last 18,500 years) from Qinghai Lake. Parallel analyses revealed that low amoA gene abundance corresponded to high total organic carbon (TOC) and salinity, while high amoA gene abundance corresponded to low TOC and salinity. In the Qinghai Lake region, TOC can serve as an indicator of paleo-productivity and paleo-precipitation, which is related to historic nutrient input and salinity. So our data suggest that temporal variation of AOA amoA gene abundance preserved in Qinghai Lake sediment may reflect the variations of nutrient level and salinity throughout the late Pleistocene and Holocene in the Qinghai Lake region. PMID:26666501

The Development of 3d Sub-Surface Mapping Scheme and its Application to Martian Lobate Debris Aprons

NASA Astrophysics Data System (ADS)

Baik, H.; Kim, J.

2017-07-01

The Shallow Subsurface Radar (SHARAD), a sounding radar equipped on the Mars Reconnaissance Orbiter (MRO), has produced highly valuable information about the Martian subsurface. In particular, the complicated substructures of Mars such as polar deposit, pedestal crater and the other geomorphic features involving possible subsurface ice body has been successfully investigated by SHARAD. In this study, we established a 3D subsurface mapping strategy employing the multiple SHARAD profiles. A number of interpretation components of SHARAD signals were integrated into a subsurface mapping scheme using radargram information and topographic data, then applied over a few mid latitude Lobate Debris Aprons (LDAs). From the identified subsurface layers of LDA, and the GIS data base incorporating the other interpretation outcomes, we are expecting to trace the origin of LDAs. Also, the subsurface mapping scheme developed in this study will be further applied to other interesting Martian geological features such as inter crater structures, aeolian deposits and fluvial sediments. To achieve higher precision sub-surface mapping, the clutter simulation employing the high resolution topographic data and the upgraded clustering algorithms assuming multiple sub-surface layers will be also developed.

Variations of marine pore water salinity and chlorinity in Gulf of Alaska sediments (IODP Expedition 341)

NASA Astrophysics Data System (ADS)

März, Christian; Mix, Alan C.; McClymont, Erin; Nakamura, Atsunori; Berbel, Glaucia; Gulick, Sean; Jaeger, John; Schneider (LeVay), Leah

2014-05-01

Pore waters of marine sediments usually have salinities and chlorinities similar to the overlying sea water, ranging around 34-35 psu (Practical Salinity Units) and around 550 mM Cl-, respectively. This is because these parameters are conservative in the sense that they do not significantly participate in biogeochemical cycles. However, pore water studies carried out in the frame of the International Ocean Discovery Program (IODP) and its predecessors have shown that salinities and chlorinities of marine pore waters can substantially deviate from the modern bottom water composition in a number of environmental settings, and various processes have been suggested to explain these phenomena. Also during the recent IODP Expedition 341 that drilled five sites in the Gulf of Alaska (Northeast Pacific Ocean) from the deep Surveyor Fan across the continental slope to the glaciomarine shelf deposits, several occurrences of pore waters with salinities and chlorinities significantly different from respective bottom waters were encountered during shipboard analyses. At the pelagic Sites U1417 and U1418 (~4,200 and ~3,700 m water depth, respectively), salinity and chlorinity maxima occur around 20-50 m sediment depth, but values gradually decrease with increasing drilling depths (down to 30 psu in ~600 m sediment depth). While the pore water freshening at depth is most likely an effect of clay mineral dehydration due to increasing burial depth, the shallow salinity and chlorinity maxima are interpreted as relicts of more saline bottom waters that existed in the North Pacific during the Last Glacial Maximum (Adkins et al., 2002). In contrast, the glaciomarine slope and shelf deposits at Site U1419 to U1421 (~200 to 1,000 m water depth) are characterised by unexpectedly low salinitiy and chlorinity values (as low as 16 psu and 295 mM Cl-, respectively) already in very shallow sediment depths (~10 m), and their records do not show systematic trends with sediment depth. Freshening of pore waters in continental margin settings has been reported in association with dissociating gas hydrate deposits (Hesse, 2003), but neither seismic profiles nor sediment records showed any indications for the presence of gas hydrates at the Gulf of Alaska sites. An alternative and intriguing explanation for these almost brackish waters in the glaciomarine shelf and slope deposits is the presence of glacial meltwater that could either be "fossil" (stored in the glaciomarine sediments since the last glacial termination) or "recent" (i.e., actively flowing from currently melting glaciers of the St. Elias Mountain Range along permeable layers within the shelf deposits). As these relatively fresh waters are found at three distinct drill sites, it can be assumed that they are distributed all along the Gulf of Alaska shelf and slope, and similar findings have been reported at other glaciated continental margins, e.g., off East Greenland (DeFoor et al., 2011) and Antarctica (Mann and Gieskes, 1975; Chambers, 1991; Lu et al., 2010). While a recent review has highlighted the importance of fresh and brackish water reservoirs in continental shelf deposits worldwide (Post et al., 2013), we suggest that climatic and depositional processes affecting glaciated continental margins (e.g., the release of huge amounts of fresh water from ice sheets and glaciers during glacial terminations, and the rapid deposition of unconsolidated sediments on the adjacent shelf) are particularly favourable for the storage and/or flow of meltwater below the present sea floor. Adkins JF, McIntyre K, Schrag DP (2002) The salinity, temperature, and d18O of the glacial deep ocean. Science 298, 1769-1773. Chambers SR (1991) Solute distributions and stable isotope chemistry of interstitial waters from Prydz Bay, Antarctica. Proceedings of the Ocean Drilling Program 119, 375-392. DeFoor W, Person M, Larsen HC, Lizarralde D, Cohen D, Dugam B (2011) Ice sheet-derived submarine groundwater discharge on Greenland's continental shelf. Water Resources Research 47, W07549. Hesse R (2003) Pore water anomalies of submarine gas-hydrate zones as tool to assess hydrate abundance and distribution in the subsurface: What have we learned in the past decade? Earth-Science Reviews 61, 149-179. Lu Z, Rickaby REM, Wellner J, Georg B, Charnley N, Anderson JB, Hensen C (2010) Pore fluid modeling approach to identify recent meltwater signals on the West Antarctic Peninsula. Geochemistry, Geophysics, Geosystems 11, doi: 10.1029/2009GC002949. Mann R, Gieskes JM (1975) Interstitial water studies, Leg 28. Deep Sea Drilling Project Initial Reports 28, 805-814. Post VEA, Groen J, Kooi H, Person M, Ge S, Edmunds M (2013) Offshore fresh groundwater reserves as a global phenomenon. Nature 504, 71-78.

Hydrate pingoes at Nyegga: some characteristic features

NASA Astrophysics Data System (ADS)

Hovland, M.

2009-04-01

Hydrate pingoes were observed on the seafloor during two different remotely operated vehicle (ROV)-dives, conducted by Statoil at complex-pockmark G11, at Nyegga, off Mid-Norway. Confirmation that these structures actually represent hydrate ice-cored sediment mounds (pingoes), was done by other investigators (Ivanov et al., 2006). Because it is expected that hydrate pingoes represent relatively dynamic seafloor topographic structures and that their shape and size most probably will change over relatively short time, it is important to know how to recognise them visually. Hovland and Svensen (2006) highlighted five different characteristic aspects that define hydrate pingoes on the sea floor: 1) They are dome- or disc-shaped features, which may attain any size from ~0.5 m in height and upwards. Inside pockmark G11, they were up to 1 m high. 2) They are circular or oval in plan view and may attain lateral sizes on the seafloor ranging upwards from ~0.5 m. Inside G11 they had lengths of several metres and widths of up to 4 m. 3) They have dense communities of organisms growing on their surfaces. At G11, they were overgrown with small pogonophoran tube-worms. 4) They have patches of white or grey bacterial mats growing on their surface, indicating advection (seepage) of reduced pore-waters. 5) They have small pits and patches of fluidized sediments on their surface, indicating pit corrosion of the sub-surface gas hydrate. Because gas hydrates often form in high-porosity, near-surface sediments, where water is readily available, it is thought that they will build up at locations where gases are actively migrating upwards from depth. However, gas hydrates are not stable in the presence of ambient seawater, as seawater is deficient in guest molecule gases (normally methane). Therefore, they tend to build up below surface above conduits for gas flow from depth. But, the near-surface hydrate ice-lenses will continually be corroded by seawater circulating into the sediments from above. It is, therefore, expected that hydrate pingoes continually accrete from below and ablate from above, processes which cause a continuous change of size and shape over time, as long as fluid migration is active. These active (mainly inorganic) processes also stimulate organic life, by the continuous release of: a) dissolved methane and other reduced chemical species, and b) low-salinity and/or high-salinity water, released by active hydrate formation and dissociation.

Total Hg, methyl Hg and other toxic heavy metals in a northern Gulf of Mexico estuary: Louisiana Pontchartrain basin.

PubMed

Delaune, R D; Gambrell, R P; Jugsujinda, Aroon; Devai, Istavan; Hou, Aixin

2008-07-15

Concentration of total Hg, methyl Hg, and other heavy metals were determined in sediment collected along a salinity gradient in a Louisiana Gulf Coast estuary. Surface sediment was collected at established coordinates (n = 292) along a salinity gradient covering Lake Maurepas, Lake Pontchartrain, Lake Borgne and the Chandeleur Sound located in the 12,170 km(2) Pontchartrain basin estuary southeastern coastal Louisiana. Lake Maurepas sediment with lower salinity contained higher levels of methyl Hg (0.80 microg/kg) than Lake Pontchartrain (0.55 microg/kg). Lake Maurepas sediment also had higher levels of total Hg (98.0 microg/kg) as compared to Lake Pontchartrain (67.0 microg/kg). Average total Hg content of Lake Borgne and the Chandeleur Sound sediment was 24.0 microg/kg dry sediment and methyl Hg content averaged 0.21 microg/kg dry sediment. Methyl Hg content of sediment was positively correlated with total Hg, organic matter and clay content of sediment. Methyl Hg was inversely correlated with salinity, sediment Eh and sand content. Total Hg and methyl Hg decreased with increase in salinity in the order of Lake Maurepas > Lake Pontchartrain > Lake Borgne/ the Chandeleur Sound. Lake Maurepas containing several times higher amount of methyl Hg in sediment as compared to Lake Pontchartrain and Lake Borgne and the Chandeleur Sound is an area that could serve as potential source of mercury to the aquatic food chain. Methyl Hg content of sediment in the estuary could be predicted by the equation: Methyl Hg = 0.11670-0.0625 x Salinity + 0.05349 x O.M. + 0.00513 x Total Hg - 0.00250 x Clay. Concentrations of other toxic heavy metals (Pb, Cd, Ni, Cu and Zn) in sediment were not elevated and was statistically correlated with sediment texture and iron and aluminum content of sediment.

Simulated oil release from oil-contaminated marine sediment in the Bohai Sea, China.

PubMed

Yuan, Lingling; Han, Longxi; Bo, Wenjie; Chen, Hua; Gao, Wenshen; Chen, Bo

2017-05-15

There is a high degree of heavy oil partitioning into marine sediments when an oil spill occurs. Contaminated sediment, as an endogenous pollution source, can re-pollute overlying water slowly. In this study, a static oil release process and its effects in marine sediment was investigated through a series of experiments with reproductive heavy oil-contaminated marine sediment. The oil release process was accurately simulated with a Lagergren first-order equation and reached equilibration after 48h. The fitted curve for equilibrium concentration (C 0 ) and first-order rate constant (k 1 ) for sediment pollution levels exhibited a first-order log relationship. The instantaneous release rate (dC t dt) was also calculated. The C 0 increased with increases in temperature and dissolved organic matter (DOM), and decreasing salinity. The k 1 increased with temperature, but was not affected by DOM and salinity. These results can be used to better understand the fate of heavy oil in contaminated sediments of the Bohai Sea. Copyright © 2017. Published by Elsevier Ltd.

Application of Rhizon Porewater Samplers to Shipboard Operations, IODP Expedition 308, Northeast Gulf of Mexico

NASA Astrophysics Data System (ADS)

Gilhooly, W. P.; Macko, S. A.; Flemings, P. B.

2005-12-01

Pleistocene and Recent sediments within the Brazos-Trinity and Ursa Basins (northwestern Gulf of Mexico) were largely deposited by turbidity currents and have been deformed by a number of mass transport events. The geochemical composition of interstitial waters was determined in order to assess fluid flow within these sediments. Typical porewater sampling resolution, using advanced piston coring and the traditional Manheim squeezer technique, is approximately one sample every other core (20m) with the highest working resolution at one sample every 1.5m. In this study, Rhizon soil moisture samplers were used to attain high-resolution porewater profiles within sea floor surface sediments and for permeable sediments at depth. The small dimensions (2mm x 30mm) and pore-size (1μm) of the devices enable high-frequency placement within a core, specific targeting of the sequence of interest, and do not require sediment removal from the core, or filtering of extracted porewaters. Initial shipboard analyses derived from sediments at the Ursa Basin (Site 1322) indicate a linear decrease in salinity with depth at U1322 where the overpressure gradient is thought to be greatest. The less saline waters with depth lends evidence for potential mixing between deep-seated fluids and low salinity ones derived from the Blue Unit and seawater. Isotopic composition and concentrations of sulfur species (SO4 and H2S) dissolved in porewaters, as well as, ionic compositions (Cl, Na, K, Ca, Mg) and chemical composition of associated sediments (%C, %N, 13C, and 15N) are compared with chemical results obtained with squeezers.

Circulation and sedimentation in a tidal-influenced fjord lake: Lake McKerrow, New Zealand

NASA Astrophysics Data System (ADS)

Pickrill, R. A.; Irwin, J.; Shakespeare, B. S.

1981-01-01

Lake McKerrow is a tide-influenced fjord lake, separated from the open sea by a Holocene barrier spit. Fresh, oxygenated waters of the epilimnion overlie saline, deoxygenated waters of the hypolimnion. During winter, water from the Upper Hollyford River interflows along the pycnocline, depositing coarse silt on the steep delta and transporting finer sediment down-lake. An extensive sub-lacustrine channel system on the foreset delta slope is possibly maintained by turbidity currents. Saline waters of the hypolimnion are periodically replenished. During high tides and low lake levels saline water flows into the lake and downslope into the lake basin as a density current in a well defined channel.

Microbial community assembly and evolution in subseafloor sediment.

PubMed

Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J G; Jochum, Lara M; Schreiber, Lars; Chen, Xihan; Lever, Mark A; Polz, Martin F; Jørgensen, Bo B; Schramm, Andreas; Kjeldsen, Kasper U

2017-03-14

Bacterial and archaeal communities inhabiting the subsurface seabed live under strong energy limitation and have growth rates that are orders of magnitude slower than laboratory-grown cultures. It is not understood how subsurface microbial communities are assembled and whether populations undergo adaptive evolution or accumulate mutations as a result of impaired DNA repair under such energy-limited conditions. Here we use amplicon sequencing to explore changes of microbial communities during burial and isolation from the surface to the >5,000-y-old subsurface of marine sediment and identify a small core set of mostly uncultured bacteria and archaea that is present throughout the sediment column. These persisting populations constitute a small fraction of the entire community at the surface but become predominant in the subsurface. We followed patterns of genome diversity with depth in four dominant lineages of the persisting populations by mapping metagenomic sequence reads onto single-cell genomes. Nucleotide sequence diversity was uniformly low and did not change with age and depth of the sediment. Likewise, there was no detectable change in mutation rates and efficacy of selection. Our results indicate that subsurface microbial communities predominantly assemble by selective survival of taxa able to persist under extreme energy limitation.

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface.

PubMed

Wu, Wei-Min; Carley, Jack; Green, Stefan J; Luo, Jian; Kelly, Shelly D; Van Nostrand, Joy; Lowe, Kenneth; Mehlhorn, Tonia; Carroll, Sue; Boonchayanant, Benjaporn; Löfller, Frank E; Watson, David; Kemner, Kenneth M; Zhou, Jizhong; Kitanidis, Peter K; Kostka, Joel E; Jardine, Philip M; Criddle, Craig S

2010-07-01

The effects of nitrate on the stability of reduced, immobilized uranium were evaluated in field experiments at a U.S. Department of Energy site in Oak Ridge, TN. Nitrate (2.0 mM) was injected into a reduced region of the subsurface containing high levels of previously immobilized U(IV). The nitrate was reduced to nitrite, ammonium, and nitrogen gas; sulfide levels decreased; and Fe(II) levels increased then deceased. Uranium remobilization occurred concomitant with nitrite formation, suggesting nitrate-dependent, iron-accelerated oxidation of U(IV). Bromide tracer results indicated changes in subsurface flowpaths likely due to gas formation and/or precipitate. Desorption-adsorption of uranium by the iron-rich sediment impacted uranium mobilization and sequestration. After rereduction of the subsurface through ethanol additions, background groundwater containing high levels of nitrate was allowed to enter the reduced test zone. Aqueous uranium concentrations increased then decreased. Clone library analyses of sediment samples revealed the presence of denitrifying bacteria that can oxidize elemental sulfur, H(2)S, Fe(II), and U(IV) (e.g., Thiobacillus spp.), and a decrease in relative abundance of bacteria that can reduce Fe(III) and sulfate. XANES analyses of sediment samples confirmed changes in uranium oxidation state. Addition of ethanol restored reduced conditions and triggered a short-term increase in Fe(II) and aqueous uranium, likely due to reductive dissolution of Fe(III) oxides and release of sorbed U(VI). After two months of intermittent ethanol addition, sulfide levels increased, and aqueous uranium concentrations gradually decreased to <0.1 microM.

The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface

USGS Publications Warehouse

Triska, F.J.; Duff, J.H.; Avanzino, R.J.

1993-01-01

The subsurface riparian zone was examined as an ecotone with two interfaces. Inland is a terrestrial boundary, where transport of water and dissolved solutes is toward the channel and controlled by watershed hydrology. Streamside is an aquatic boundary, where exchange of surface water and dissolved solutes is bi-directional and flux is strongly influenced by channel hydraulics. Streamside, bi-directional exchange of water was qualitatively defined using biologically conservative tracers in a third order stream. In several experiments, penetration of surface water extended 18 m inland. Travel time of water from the channel to bankside sediments was highly variable. Subsurface chemical gradients were indirectly related to the travel time. Sites with long travel times tended to be low in nitrate and DO (dissolved oxygen) but high in ammonium and DOC (dissolved organic carbon). Sites with short travel times tended to be high in nitrate and DO but low in ammonium and DOC. Ammonium concentration of interstitial water also was influenced by sorption-desorption processes that involved clay minerals in hyporheic sediments. Denitrification potential in subsurface sediments increased with distance from the channel, and was limited by nitrate at inland sites and by DO in the channel sediments. Conversely, nitrification potential decreased with distance from the channel, and was limited by DO at inland sites and by ammonium at channel locations. Advection of water and dissolved oxygen away from the channel resulted in an oxidized subsurface habitat equivalent to that previously defined as the hyporheic zone. The hyporheic zone is viewed as stream habitat because of its high proportion of surface water and the occurrence of channel organisms. Beyond the channel's hydrologic exchange zone, interstitial water is often chemically reduced. Interstitial water that has not previously entered the channel, groundwater, is viewed as a terrestrial component of the riparian ecotone. Thus, surface water habitats may extend under riparian vegetation, and terrestrial groundwater habitats may be found beneath the stream channel. ?? 1993 Kluwer Academic Publishers.

Geophysical and physical measurements applied to characterize an area prone to quick clay landslides in SW Sweden

NASA Astrophysics Data System (ADS)

Salas-Romero, Silvia; Malehmir, Alireza; Snowball, Ian; Lougheed, Bryan C.; Hellqvist, Magnus

2014-05-01

The study of quick clay landslides in Nordic countries, such as Sweden and Norway, is wide and varied. However, the occurrence of catastrophes like those in Munkedal, Sweden, in 2006, demands a more complete characterization of these materials and their extensiveness. The objectives of this research are mainly focused on obtaining information about the properties and behavior of quick clays in an area prone to landslides in southwestern Sweden. Two fieldwork campaigns were carried out in 2011 and 2013, using methods such as 2D and 3D P-wave and S-wave seismic, geoelectrics, controlled-source and radio-magnetotellurics, ground gravity, as well as downhole geophysics (measuring fluid temperature and conductivity, gamma radiation, sonic velocity and resistivity) performed in three boreholes located in the study area. Drill cores recovered using the SONIC technique provided samples for paleontological information, as well as laboratory measurements of physical properties of the subsurface materials to a maximum subsurface depth of about 60 m. The laboratory measurements included grain size analysis, mineral magnetic properties, electric conductivity, pH, salinity, total dissolved solids, x-ray fluorescence (XRF), and a reconnaissance study of the fossil content. A correlation study of the downhole geophysical measurements, 2D seismic sections located at the intersection with the boreholes and the sample observations indicated that the presence of quick clays is associated with contacts with coarse-grained materials. Although the PVC casing of the boreholes interferes with the sonic and resistivity measurements, the perforated parts of the PVC casing show significant changes. The most important variations in magnetic susceptibility and conductivity mostly coincide with these coarse-grained layers, supporting the seismic data. Coarse-grained layers are characterized by enhanced magnetic susceptibility and conductivity. Grain size analysis results on subsamples from the deepest borehole (the one closer to the river) correlate with changes in the natural gamma measurements. Overall, the fine sediments dominate over the coarser ones, and clay and fine silt are found to be the most abundant. The preliminary paleontological observations indicate that the most of the sediments were formed in a glaciomarine environment. Additionally, XRF measurements were performed on subsamples from the deepest borehole, indicating high Cl/V values (a good salinity indicator) in the thickest coarse-grained layer. In conclusion, all the collected data show a comprehensive description of the subsurface in the area. The characteristics of the observed quick clays will offer more information about these materials in Sweden, expanding our knowledge about them and assisting in risk assessments in similar areas where similar geohazards are present. Future work will be geared towards processing of the data collected in 2013, including a seismic line across the river, which will complement and extend the study area. New fieldwork campaigns and inversion of surface wave data will improve the interpretation of the shallow subsurface. Furthermore, geotechnical data from the site, obtained by the Swedish Geotechnical Institute, will be used to define and support the presence of quick clays in the area. Acknowledgements: GWB-SEG, Formas, SGU, LIAG, SGI, PAN and graduate and undergraduate students from Uppsala University for their fieldwork contribution.

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE PAGES

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk; ...

2017-04-05

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Effect of salinity on heavy metal mobility and availability in intertidal sediments of the Scheldt estuary

NASA Astrophysics Data System (ADS)

Du Laing, G.; De Vos, R.; Vandecasteele, B.; Lesage, E.; Tack, F. M. G.; Verloo, M. G.

2008-05-01

The effect of the flood water salinity on the mobility of heavy metals was studied for intertidal sediments of the Scheldt estuary (Belgium). Soils and sediments of 4 sampling sites were flooded with water of different salinities (0.5, 2.5, and 5 g NaCl L -1). Metal concentrations were monitored in pore water and surface water. To study the potential effects of flood water salinity on metal bioavailability, duckweed ( Lemna minor) was grown in the surface water. The salinity was found to primarily enhance the mobility of Cd and its uptake by duckweed. Cadmium concentrations in pore water of soils and sediments and surrounding surface waters significantly exceeded sanitation thresholds and quality standards during flooding of initially oxidized sediments. Moreover, the effect was observed already at lower salinities of 0.5 g NaCl L -1. This implies that risks related to Cd uptake by organisms and Cd leaching to ground water are relevant when constructing flooding areas in the brackish zones of estuaries. These risks can be reduced by inducing sulphide precipitation because Cd is then immobilised as sulphide and its mobility becomes independent of flood water salinity. This could be achieved by permanently flooding the polluted sediments, because sulphates are sufficiently available in the river water of the brackish part of the estuary.

Application of ground-penetrating radar methods in determining hydrogeologic conditions in a karst area, west-central Florida

USGS Publications Warehouse

Barr, G.L.

1993-01-01

Ground-penetrating radar (GPR) is useful as a surface geophysical method for exploring geology and subsurface features in karst settings. Interpretation of GPR data was used to infer lithology and hydrogeologic conditions in west-central Florida. This study demonstrates how GPR methods can be used to investigate the hydrogeology of an area. GPR transmits radio- frequency electromagnetic waves into the ground and receives reflected energy waves from subsurface interfaces. Subsurface profiles showing sediment thickness, depth to water table and clay beds, karst development, buried objects, and lake-bottom structure were produced from GPR traverses obtained during December 1987 and March 1990 in Pinellas, Hillsborough, and Hardee Counties in west-central Florida. Performance of the GPR method is site specific, and data collected are principally affected by the sediment and pore fluids, conductances and dielectric constants. Effective exploration depths of the GPR surveys through predominately unsaturated and saturated sand and clay sediments at five study sites ranged from a few feet to greater than 50 feet below land surface. Exploration depths were limited when high conductivity clay was encountered, whereas greater exploration depths were possible in material composed of sand. Application of GPR is useful in profiling subsurface conditions, but proper interpretation depends upon the user's knowledge of the equipment and the local hydrogeological setting, as well as the ability to interpret the graphic profile.

Macronutrient and carbon supply, uptake and cycling across the Antarctic Peninsula shelf during summer

PubMed Central

Jones, Elizabeth M.; Venables, Hugh J.; Firing, Yvonne L.; Dittrich, Ribanna; Heiser, Sabrina; Dougans, Julie

2018-01-01

The West Antarctic Peninsula shelf is a region of high seasonal primary production which supports a large and productive food web, where macronutrients and inorganic carbon are sourced primarily from intrusions of warm saline Circumpolar Deep Water. We examined the cross-shelf modification of this water mass during mid-summer 2015 to understand the supply of nutrients and carbon to the productive surface ocean, and their subsequent uptake and cycling. We show that nitrate, phosphate, silicic acid and inorganic carbon are progressively enriched in subsurface waters across the shelf, contrary to cross-shelf reductions in heat, salinity and density. We use nutrient stoichiometric and isotopic approaches to invoke remineralization of organic matter, including nitrification below the euphotic surface layer, and dissolution of biogenic silica in deeper waters and potentially shelf sediment porewaters, as the primary drivers of cross-shelf enrichments. Regenerated nitrate and phosphate account for a significant proportion of the total pools of these nutrients in the upper ocean, with implications for the seasonal carbon sink. Understanding nutrient and carbon dynamics in this region now will inform predictions of future biogeochemical changes in the context of substantial variability and ongoing changes in the physical environment. This article is part of the theme issue ‘The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change’. PMID:29760112

Macronutrient and carbon supply, uptake and cycling across the Antarctic Peninsula shelf during summer.

PubMed

Henley, Sian F; Jones, Elizabeth M; Venables, Hugh J; Meredith, Michael P; Firing, Yvonne L; Dittrich, Ribanna; Heiser, Sabrina; Stefels, Jacqueline; Dougans, Julie

2018-06-28

The West Antarctic Peninsula shelf is a region of high seasonal primary production which supports a large and productive food web, where macronutrients and inorganic carbon are sourced primarily from intrusions of warm saline Circumpolar Deep Water. We examined the cross-shelf modification of this water mass during mid-summer 2015 to understand the supply of nutrients and carbon to the productive surface ocean, and their subsequent uptake and cycling. We show that nitrate, phosphate, silicic acid and inorganic carbon are progressively enriched in subsurface waters across the shelf, contrary to cross-shelf reductions in heat, salinity and density. We use nutrient stoichiometric and isotopic approaches to invoke remineralization of organic matter, including nitrification below the euphotic surface layer, and dissolution of biogenic silica in deeper waters and potentially shelf sediment porewaters, as the primary drivers of cross-shelf enrichments. Regenerated nitrate and phosphate account for a significant proportion of the total pools of these nutrients in the upper ocean, with implications for the seasonal carbon sink. Understanding nutrient and carbon dynamics in this region now will inform predictions of future biogeochemical changes in the context of substantial variability and ongoing changes in the physical environment.This article is part of the theme issue 'The marine system of the West Antarctic Peninsula: status and strategy for progress in a region of rapid change'. © 2018 The Authors.

Quantification of Microbial Communities in Subsurface Marine Sediments of the Black Sea and off Namibia.

PubMed

Schippers, Axel; Kock, Dagmar; Höft, Carmen; Köweker, Gerrit; Siegert, Michael

2012-01-01

Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 m below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises Meteor 72-5 and 76-1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, catalyzed reporter deposition - fluorescence in situ hybridization (CARD-FISH) and quantitative real-time PCR (Q-PCR). Total cell counts decreased with depths from 10(9) to 10(10) cells/mL at the sediment surface to 10(7)-10(9) cells/mL below one meter depth. Based on CARD-FISH and Q-PCR analyses overall similar proportions of Bacteria and Archaea were found. The down-core distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes (16S and 18S rRNA) as well as functional genes involved in different biogeochemical processes was quantified using Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 as well as the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were highly abundant. Less abundant but detectable in most of the samples were Eukarya as well as the metal and sulfate-reducing Geobacteraceae (only in the Benguela upwelling influenced sediments). The functional genes cbbL, encoding for the large subunit of RuBisCO, the genes dsrA and aprA, indicative of sulfate-reducers as well as the mcrA gene of methanogens were detected in the Benguela upwelling and Black Sea sediments. Overall, the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Plasmid incidence in bacteria from deep subsurface sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Hicks, R.J.; Li, S.W.

Bacteria were isolated from deep terrestrial subsurface sediments underlying the coastal plain of South Carolina. A total of 163 isolates from deep sediments, surface soil, and return drill muds were examined for plasmid DNA content and resistance to the antibiotics penicillin, ampicillin, carbenicillin, streptomycin, kanamycin, and tetracycline. MICs of Cu{sup 2+}, Cr{sup 3+}, and Hg{sup 2+} for each isolate were also determined. The overall frequency of plasmid occurrence in the subsurface bacteria was 33%. Resistance was most frequent to penicillin (70% of all isolates), ampicillin (49%), and carbenicillin (32%) and was concluded to be related to the concentrations of themore » individual antibiotics in the disks used for assaying resistance and to the production of low levels of {beta}-lactamase. The frequencies of resistance to penicillin and ampicillin were significantly greater for isolates bearing plasmids than for plasmidless isolates; however, resistance was not transferable to penicillin-sensitive Escherichia coli. Hybridization of subsurface bacterial plasmids and chromosomal DNA with a whole-TOL-plasmid (pWWO) probe revealed some homology of subsurface bacterial plasmid and chromosomal DNAs, indicating a potential for those bacterial to harbor catabolic genes on plasmids or chromosomes. The incidences of antibiotic resistance and MICs of metals for subsurface bacteria were significantly different from those drill mud bacteria, ruling out the possibility that bacteria from sediments were derived from drill muds.« less

Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal.

PubMed

Magalhães, Catarina M; Joye, Samantha B; Moreira, Rosa M; Wiebe, William J; Bordalo, Adriano A

2005-05-01

The regulatory effects of salinity and inorganic nitrogen compounds on nitrification and denitrification were studied in intertidal sandy sediments and rocky biofilms in the Douro River estuary, Portugal, over a 12-month period. Nitrification and denitrification rates were measured in slurries of field samples and enrichment experiments using the difluoromethane and the acetylene inhibition techniques, respectively. Salinity did not regulate denitrification in either environment, suggesting that halotolerant bacteria dominated the denitrifier communities. However, nitrification rates were stimulated when salinity increased from 0 to 15 practical salinity units. NO3- addition experiments revealed that NO3- availability stimulates denitrification rates in sandy sediments, but not in rocky biofilms; however, in rocky biofilms a positive and linear relationship was observed between denitrification rates and water column NO3- concentrations (r=0.92) during the monthly surveys. The N2O:N2 ratios increased rapidly when NO3- increased from 63 to 363 microM; however, results from monthly surveys showed that environmental parameters other than NO3- availability may be important in controlling the variation in N2O production via denitrification. Ammonium additions to sandy sediments stimulated nitrification rates by 35% for the 20 microM NH4+ addition, but NH4+ appeared to inhibit nitrification at high concentration addition (200 microM NH4+). In contrast, rocky biofilm nitrification was stimulated by 65% when 200 microM NH4+ was added.

Concentrations of inorganic arsenic in groundwater, agricultural soils and subsurface sediments from the middle Gangetic plain of Bihar, India.

PubMed

Kumar, Manoj; Ramanathan, A L; Rahman, Mohammad Mahmudur; Naidu, Ravi

2016-12-15

Concentrations of inorganic forms [arsenite, As(III) and arsenate, As(V) of arsenic (As) present in groundwater, agricultural soils and subsurface sediments located in the middle Gangetic plain of Bihar, India were determined. Approximately 73% of the groundwater samples (n=19) show As(III) as the dominant species while 27% reveals As(V) was the dominant species. The concentration of As(III) in agricultural soil samples varies from not detectable to 40μg/kg and As(V) was observed as the major species (ranging from 1050 to 6835μg/kg) while the total As concentration varied from 3528 to 14,690μg/kg. Total extracted concentration of As was higher in the subsurface sediments (range 9119-20,056μg/kg in Methrapur and 4788-19,681μg/kg in Harail Chapar) than the agricultural soil, indicating the subsurface sediment as a source of As. Results of X-ray diffraction (XRD) and environmental scanning electron microscope (ESEM) revealed the presence of hematite and goethite throughout the vertical section below while magnetite was observed only in the upper oxidized layer at Methrapur and Harail Chapar. Alteration of Fe-oxides and presence of fibrous goethite indicating presence of diagenetic sediment. Siderite plays a crucial role as sinks to the As in subsurface sediments. The study also concluded that decomposition of organic matter present in dark and grey sections promote the redox conditions and trigger mobilization of As into groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

Modeling tidal marsh distribution with sea-level rise: evaluating the role of vegetation, sediment, and upland habitat in marsh resiliency.

PubMed

Schile, Lisa M; Callaway, John C; Morris, James T; Stralberg, Diana; Parker, V Thomas; Kelly, Maggi

2014-01-01

Tidal marshes maintain elevation relative to sea level through accumulation of mineral and organic matter, yet this dynamic accumulation feedback mechanism has not been modeled widely in the context of accelerated sea-level rise. Uncertainties exist about tidal marsh resiliency to accelerated sea-level rise, reduced sediment supply, reduced plant productivity under increased inundation, and limited upland habitat for marsh migration. We examined marsh resiliency under these uncertainties using the Marsh Equilibrium Model, a mechanistic, elevation-based soil cohort model, using a rich data set of plant productivity and physical properties from sites across the estuarine salinity gradient. Four tidal marshes were chosen along this gradient: two islands and two with adjacent uplands. Varying century sea-level rise (52, 100, 165, 180 cm) and suspended sediment concentrations (100%, 50%, and 25% of current concentrations), we simulated marsh accretion across vegetated elevations for 100 years, applying the results to high spatial resolution digital elevation models to quantify potential changes in marsh distributions. At low rates of sea-level rise and mid-high sediment concentrations, all marshes maintained vegetated elevations indicative of mid/high marsh habitat. With century sea-level rise at 100 and 165 cm, marshes shifted to low marsh elevations; mid/high marsh elevations were found only in former uplands. At the highest century sea-level rise and lowest sediment concentrations, the island marshes became dominated by mudflat elevations. Under the same sediment concentrations, low salinity brackish marshes containing highly productive vegetation had slower elevation loss compared to more saline sites with lower productivity. A similar trend was documented when comparing against a marsh accretion model that did not model vegetation feedbacks. Elevation predictions using the Marsh Equilibrium Model highlight the importance of including vegetation responses to sea-level rise. These results also emphasize the importance of adjacent uplands for long-term marsh survival and incorporating such areas in conservation planning efforts.

The evolution of the River Nile. The buried saline rift lakes in Sudan—I. Bahr El Arab Rift, the Sudd buried saline lake

NASA Astrophysics Data System (ADS)

Salama, Ramsis B.

The River Nile in Sudan, was during the Tertiary, a series of closed lake basins. Each basin occupying one of the major Sudanese rift systems (Salama, 1985a). In this paper evidence is presented for the presence of the buried saline Sudd Lake in Bahr El Arab rift. The thick Tertiary sediments filling the deep grabens were eroded from the elevated blocks; Jebel Marra, Darfur Dome, Nuba Mountains and the Nile-Congo Divide. The thick carbonate deposits existing at the faulted boundaries of Bahr El Arab defines the possible boundaries between the fresh and saline water bodies. The widespread presence of kanker nodules in the sediments was a result of continuous efflorescence, leaching and evaporative processes. The highly saline zone in the central part of the Sudd was formed through the same processes with additional sulphate being added by the oxidation of the hydrogen sulphide gases emanating from the oil fields.

Evidence for iron-sulfate coupling in salt marsh sediments

NASA Astrophysics Data System (ADS)

Mills, Jennifer; Antler, Gilad; Turchyn, Alexandra

2014-05-01

Organic carbon burial in shallow marine sediments represents an important net sink in the global carbon cycle. Microbially mediated oxidation of organic matter in oxic, suboxic, and anoxic sediments however, prevents the ultimate burial of organic carbon and its removal from the surface of the planet. Although the subsurface transformations of organic carbon have been studied extensively, an enigmatic question remains: when organic matter is deposited, what determines whether it will be buried, reoxidized, or undergo methanogenesis? One hypothesis is that the sulfur cycle, due to the abundance of sulfate in many surface environments, dominates the subsurface oxidation or other fate of organic carbon. However, it has also been suggested that iron may in turn play a key role in determining the behavior of the sulfur cycle. To better understand the controls on these processes, we are using stable isotope and geochemical techniques to explore the microbially mediated oxidation of organic carbon in salt marsh sediments in North Norfolk, UK. In these sediments there is a high supply of organic carbon, iron, and sulfate (from diurnal tidal cycles). Thus these environments may provide insight into the nature of interactions between the carbon, iron, and sulfur cycles. A series of sampling missions was undertaken in the autumn and winter of 2013-2014. In subsurface fluid samples we observe very high ferrous iron concentrations (>1mM), indicative of extended regions of iron reduction (to over 30cm depth). Within these zones of iron reduction we would predict no sulfate reduction, and as expected δ34Ssulfate remains unchanged with depth. However, δ18Osulfate exhibits significant enrichments of up to 5 permil. This decoupling in the sulfur and oxygen isotopes of sulfate is suggestive of a sulfate recycling process in which sulfate is reduced to an intermediate sulfur species and subsequently reoxidized to sulfate. Taken together, these data suggest that microbial assemblages in these salt marsh sediments facilitate a cryptic cycling of sulfur, potentially mediated by iron species in the zone of iron reduction.

Factors Effecting the Fate and Transport of CL-20 in the Vadose Zone and Groundwater: Final Report 2002 - 2004 SERDP Project CP-1255

DOE Office of Scientific and Technical Information (OSTI.GOV)

Szecsody, James E.; Riley, Robert G.; Devary, Brooks J.

2005-06-01

This SERDP-funded project was initiated to investigate the fate of CL-20 in the subsurface environment, with a focus on identification and quantification of geochemical and microbial reactions of CL-20. CL-20 can be released to the surface and subsurface terrestrial environment by: a) manufacturing processes, b) munition storage, and c) use with low order detonation or unexploded ordnance. The risk of far-field subsurface migration was assessed through labora-tory experiments with a variety of sediments and subsurface materials to quantify processes that control CL-20 sorption-limited migration and degradation. Results of this study show that CL-20 will exhibit differing behavior in the subsurfacemore » terrestrial environment: 1. CL-20 on the sediment surface will photodegrade and interact with plants/animals (described in other SERDP projects CU 1254, 1256). CL-20 will exhibit greater sorption in humid sediments to organic matter. Transport will be solubility limited (i.e., low CL-20 aqueous solubility). 2. CL-20 infiltration into soils (<2 m) from spills will be subject to sorption to soil organic matter (if present), and low to high biodegradation rates (weeks to years) depending on the microbial population (greater in humid environment). 3. CL-20 in the vadose zone (>2 m) will be, in most cases, subject to low sorption and low degradation rates, so would persist in the subsurface environment and be at risk for deep migration. Low water content in arid regions will result in a decrease in both sorption and the degradation rate. Measured degradation rates in unsaturated sediments of years would result in significant subsurface migration distances. 4. CL-20 in groundwater will be subject to some sorption but likely very slow degradation rates. CL-20 sorption will be greater than RDX. Most CL-20 degradation will be abiotic (ferrous iron and other transition metals), because most deep subsurface systems have extremely low natural microbial populations. Degradation rates will range from weeks (iron reducing systems) to years. Although CL-20 will move rapidly through most sediments in the terrestrial environment, subsurface remediation can be utilized for cleanup. Transformation of CL-20 to intermediates can be rapidly accomplished under: a) reducing conditions (CL-20 4.1 min. half-life, RDX 18 min. half-life), b) alkaline (pH >10) conditions, and c) bioremediation with added nutrients. CL-20 degradation to intermediates may be insufficient to mitigate environmental impact, as the toxicity of many of these compounds is unknown. Biostimulation in oxic to reducing systems by carbon and nutrient addition can mineralize CL-20, with the most rapid rates occurring under reducing conditions.« less

Deep subsurface microbial processes

USGS Publications Warehouse

Lovley, D.R.; Chapelle, F.H.

1995-01-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed redox reactions that influence the geophysical properties of these environments. Furthermore, there is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by man's activities, and there is a need to predict the extent to which microbial activity may remediate such contamination. Metabolically active microorganisms can be recovered from a diversity of deep subsurface environments. The available evidence suggests that these microorganisms are responsible for catalyzing the oxidation of organic matter coupled to a variety of electron acceptors just as microorganisms do in surface sediments, but at much slower rates. The technical difficulties in aseptically sampling deep subsurface sediments and the fact that microbial processes in laboratory incubations of deep subsurface material often do not mimic in situ processes frequently necessitate that microbial activity in the deep subsurface be inferred through nonmicrobiological analyses of ground water. These approaches include measurements of dissolved H2, which can predict the predominant microbially catalyzed redox reactions in aquifers, as well as geochemical and groundwater flow modeling, which can be used to estimate the rates of microbial processes. Microorganisms recovered from the deep subsurface have the potential to affect the fate of toxic organics and inorganic contaminants in groundwater. Microbial activity also greatly influences 1 the chemistry of many pristine groundwaters and contributes to such phenomena as porosity development in carbonate aquifers, accumulation of undesirably high concentrations of dissolved iron, and production of methane and hydrogen sulfide. Although the last decade has seen a dramatic increase in interest in deep subsurface microbiology, in comparison with the study of other habitats, the study of deep subsurface microbiology is still in its infancy.

Computerized video-enhanced high temporal resolution of erythrocytes sedimentation rate (ESR-graphy) reveals complex dynamic and self-organizing properties of whole blood

NASA Astrophysics Data System (ADS)

Voeikov, Vladimir L.; Kondakov, Sergey E.; Buravleva, Ekaterina; Kaganovsky, Isaak; Reznikov, Mikhail

2000-05-01

An automatic device for high-temporal resolution of the process of red blood sedimentation was designed. The position of the boundary between red blood and plasma may be registered each 30 sec in several pipettes simultaneously with +/- 10 mkm precision. Fractional rates of the boundary movement are deduced with high accuracy. Data are processed by a PC and presented as velocity-time curves (ESR-grams) and the curves describing time evolution of the boundary position. Several unexpected phenomena in the process of red blood sedimentation have been revealed. Upward fast movements of the boundary up to 1 mm were noted. In patients' blood sets of 5 - 10 milliHz oscillations of sedimentation rate were usually developing at early stages of blood sedimentation. In non-diluted healthy donors' blood high amplitude periodic oscillations were either absent, or were emerging only after blood resided in pipettes for several hours. When blood was diluted to a certain degree with physiological saline or with own plasma long-term low frequency (1 - 3 milliHz) rate oscillations regularly appeared. Non-trivial dependence of patterns of ESR-grams on diluting of blood with own plasma or saline was observed. Thus, non-linear dynamic behavior of living blood has been revealed due to application of the principles of the system of technical vision for the detailed analysis of red blood sedimentation kinetics.

Evolution of the electrical resistivity anisotropy during saline tracer tests: insights from geoelectrical milli-fluidic experiments

NASA Astrophysics Data System (ADS)

Jougnot, D.; Jimenez-Martinez, J.; Legendre, R.; Le Borgne, T.; Meheust, Y.; Linde, N.

2017-12-01

The use of time-lapse electrical resistivity tomography has been largely developed in environmental studies to remotely monitor water saturation and contaminant plumes migration. However, subsurface heterogeneities, and corresponding preferential transport paths, yield a potentially large anisotropy in the electrical properties of the subsurface. In order to study this effect, we have used a newly developed geoelectrical milli-fluidic experimental set-up with a flow cell that contains a 2D porous medium consisting of a single layer of cylindrical solid grains. We performed saline tracer tests under full and partial water saturations in that cell by jointly injecting air and aqueous solutions with different salinities. The flow cell is equipped with four electrodes to measure the bulk electrical resistivity at the cell's scale. The spatial distribution of the water/air phases and the saline solute concentration field in the water phase are captured simultaneously with a high-resolution camera by combining a fluorescent tracer with the saline solute. These data are used to compute the longitudinal and transverse effective electrical resistivity numerically from the measured spatial distributions of the fluid phases and the salinity field. This approach is validated as the computed longitudinal effective resistivities are in good agreement with the laboratory measurements. The anisotropy in electrical resistivity is then inferred from the computed longitudinal and transverse effective resistivities. We find that the spatial distribution of saline tracer, and potentially air phase, drive temporal changes in the effective resistivity through preferential paths or barriers for electrical current at the pore scale. The resulting heterogeneities in the solute concentrations lead to strong anisotropy of the effective bulk electrical resistivity, especially for partially saturated conditions. Therefore, considering the electrical resistivity as a tensor could improve our understanding of transport properties from field-scale time-lapse ERT.

Characterization of a Louisiana Bay Bottom

NASA Astrophysics Data System (ADS)

Freeman, A. M.; Roberts, H. H.

2016-02-01

This study correlates side-scan sonar and CHIRP water bottom-subbottom acoustic amplitudes with cone penetrometer data to expand the limited understanding of the geotechnical properties of sediments in coastal Louisiana's bays. Standardized analysis procedures were developed to characterize the bay bottom and shallow subsurface of the Sister Lake bay bottom. The CHIRP subbottom acoustic data provide relative amplitude information regarding reflection horizons of the bay bottom and shallow subsurface. An amplitude analysis technique was designed to identify different reflectance regions within the lake from the CHIRP subbottom profile data. This amplitude reflectivity analysis technique provides insight into the relative hardness of the bay bottom and shallow subsurface, useful in identifying areas of erosion versus deposition from storms, as well as areas suitable for cultch plants for state oyster seed grounds, or perhaps other restoration projects. Side-scan and CHIRP amplitude reflectivity results are compared to penetrometer data that quantifies geotechnical properties of surface and near-surface sediments. Initial results indicate distinct penetrometer signatures that characterize different substrate areas including soft bottom, storm-deposited silt-rich sediments, oyster cultch, and natural oyster reef areas. Although amplitude analysis of high resolution acoustic data does not directly quantify the geotechnical properties of bottom sediments, our analysis indicates a close relationship. The analysis procedures developed in this study can be applied in other dynamic coastal environments, "calibrating" the use of synoptic acoustic methods for large-scale water bottom characterization.

Assessing the Impact of Topography on Groundwater Salinization Due to Storm Surge Inundation

NASA Astrophysics Data System (ADS)

Yu, X.; Yang, J.; Graf, T.; Koneshloo, M.; O'Neal, M. A.; Michael, H. A.

2015-12-01

The sea-level rise and increase in the frequency and intensity of coastal storms due to climate change are likely to exacerbate adverse effects of storm surges on low-lying coastal areas. The landward flow of water during storm surges introduces salt to surficial coastal aquifers and threatens groundwater resources. Coastal topography (e.g. ponds, dunes, canals) likely has a strong impact on overwash and salinization processes, but is generally highly simplified in modeling studies. To understand the topographic impacts on groundwater salinization, we modeled overwash and variable-density groundwater flow and salt transport in 3D using the fully coupled surface and subsurface numerical simulator, HydroGeoSphere. The model simulates the coastal aquifer as an integrated system considering processes such as overland flow, coupled surface and subsurface exchange, variably saturated flow, and variable-density flow. To represent various coastal landscape types, we started with realistic coastal topography from Delaware, USA, and then generated synthetic fields with differing shore-perpendicular connectivity and surface depressions. The groundwater salinization analysis suggested that the topographic connectivity promoting overland flow controls the volume of aquifer that is salinized. In contrast, depression storage of surface water mainly controls the time for infiltrated salt to flush from the aquifer. The results indicate that for a range of synthetic conditions, topography increases the flushing time of salt by 20-300% relative to an equivalent "simple slope" in which topographic variation is absent. Our study suggests that topography have a significant impact on overwash salinization, with important implications for land management at local scales and groundwater vulnerability assessment at regional to global scales.

Modeling the effects of sodium chloride on degradation of chloramphenicol in aquaculture pond sediment.

PubMed

Chien, Y H; Lai, H T; Liu, S M

1999-10-01

Sodium chloride was added to aquaculture pond sediment to determine effects of different salinities on degradation of chloramphenicol (CM). In this experiment, freshwater (0 ppt salinity) eel pond sediment slurries (10% w/v) were amended with sodium chloride to obtain salinities of 12, 24 and 36 ppt. There were no significant differences in sorption rate either between aerobic and anaerobic conditions or among various salinities. Degradation of CM fitted well to the decaying exponential curve. The degradation rates under anaerobic conditions were significantly greater than those under aerobic conditions. As salinity increased, the degradation rates decreased under both aerobic and anaerobic conditions. The differences in degradation rates either between aerobic and anaerobic conditions or among various salinities were attributed to the effects of microbial activities under different environments.

Hydrology and subsurface transport of oil-field brine at the U.S. Geological Survey OSPER site "A", Osage County, Oklahoma

USGS Publications Warehouse

Herkelrath, W.N.; Kharaka, Y.K.; Thordsen, J.J.; Abbott, M.M.

2007-01-01

Spillage and improper disposal of saline produced water from oil wells has caused environmental damage at thousands of sites in the United States. In order to improve understanding of the fate and transport of contaminants at these sites, the U.S. Geological Survey carried out multidisciplinary investigations at two oil production sites near Skiatook Lake, Oklahoma. As a part of this effort, the hydrology and subsurface transport of brine at OSPER site "A", a tank battery and pit complex that was abandoned in 1973, was investigated. Based on data from 41 new boreholes that were cored and completed with monitoring wells, a large (???200 m ?? 200 m ?? 20 m) plume of saline ground water was mapped. The main dissolved species are Na and Cl, with TDS in the plume ranging as high as 30,000 mg/L. Analysis of the high barometric efficiency of the wells indicated a confined aquifer response. Well-slug tests indicated the hydraulic conductivity is low (0.3-7.0 cm/day). Simplified flow and transport modeling supports the following conceptual model: (1) prior to the produced water releases, recharge was generally low (???1 cm/a); (2) in ???60 a of oil production enough saline produced water in pits leaked into the subsurface to create the plume; (3) following abandonment of the site in 1973 and filling of Skiatook Reservoir in the mid-1980s, recharge and lateral flow of water through the plume returned to low values; (4) as a result, spreading of the brine plume caused by mixing with fresh ground water recharge, as well as natural attenuation, are very slow.

Genesis of economic relevant fresh groundwater resources in Pleistocene/ Neogene aquifers in Nam Dinh (Red River Delta, Vietnam).

NASA Astrophysics Data System (ADS)

Wagner, F.; Ludwig, R. R.; Noell, U.; Hoang, H. V.; Pham, N. Q.; Larsen, F.; Lindenmaier, F.

2012-04-01

In the Southern Red River Delta (Nam Dinh Province, Vietnam), a local lens of low saline pore water of high quality has been identified in unconsolidated Pleistocene and Neogene aquifers, which are regionally known to contain brackish and saline pore waters. Since the 1990ies, ongoing overexploitation of the fresh groundwater results in decreasing GW heads up to 0.6 m/a and the development of a regional abstraction cone. The presented study focuses on distribution and genesis of fresh and saline pore waters and reflects the results in frame of the regional hydrogeological context. Observations of the geological structure and groundwater dynamics combined with hydrochemical and isotopic studies suggest adjacent Triassic hard rock aquifers as the major source for fresh Pleistocene and Neogene groundwater. Salinization status in the economically most relevant Pleistocene aquifer has been studied based on archive and new hydrochemical and geophysical data. Own hydrochemical field studies as well as laboratory measurements of the specific resistivity of dry sediment samples allow the translation of induction logging data from existing monitoring wells into vertical pore water salinity profiles. This approach suggests the regional occurrence of saline pore water in shallow Holocene sediments in the working area, as confirmed by pore water studies in Hoan et al. (2010). Interpretation of induction logging and stable isotope data suggest vertical diffusion of saline pore water in shallow Holocene sediments as a source for high saline pore water in deeper aquifers. Analytical diffusion modeling for a period of 3000 years confirms that vertical diffusion of Holocene paleo-sea water can explain saline pore water in Pleistocene and Neogene aquifers in a stagnant environment. The constant influx of fresh groundwater from adjacent Triassic hard rocks results in flushing of the primary Pleistocene and Neogene pore water and inhibits the infiltration of saline water from marine Holocene sediments. Consequently, 14C groundwater age dating suggests increasing groundwater ages from fresh to saline pore water in Pleistocene and Neogene up to 14 ka, presuming that contamination with dead carbon is neglectable. Highest 14C ages of low saline water has been observed in the center of the exploited fresh water lens reaching up to 10 ka, reflecting low groundwater flux and recharge rates. Due to the overexploitation, the natural coastward directed groundwater flow has turned towards the centre of the abstraction cone with horizontal apparent velocities of up to 0.6 m/a. This suggests, that brackish and higher saline groundwater from the Red River area (East Nam Dinh) and offshore migrates towards the fresh water lens. Thus, more sustainable exploitation strategies urgently must be implemented to reduce overexploitation of limited and valuable fresh groundwater resources in Nam Dinh Province. Reference: Hoan H., Pham Q. N., Larsen F. Tran L. V., Wagner F., Christiansen A.V. (2010): Processes Controlling High Saline Groundwater in the Nam Dinh Province, Vietnam. 2nd Asia-Pacific Coastal Aquifer Management Meeting (ACAMM), October 18-21, 2011, Jeju Island, Korea.

Implications of Tidally Varying Bed Stress and Intermittent Estuarine Stratification on Fine-Sediment Dynamics through the Mekong's Tidal River to Estuarine Reach

NASA Astrophysics Data System (ADS)

McLachlan, R. L.; Ogston, A. S.; Allison, M. A.; Hilmo, R. S.

2016-12-01

Widely varying ratios of marine to freshwater influence within near-mouth distributaries have impacts on sedimentary processes within the lower river that have yet to be thoroughly characterized. These impacts are of particular interest because river gauging stations are often above the river-estuary interface and, therefore, may not accurately characterize sediment flux through the lower river. Flow velocity, salinity, and suspended sediment properties (concentration, particle size, and settling velocity) were measured within the tidal Sông Hu distributary of the lower Mekong River, Vietnam during both high and low river discharge seasons. Seasonal variations in river discharge and estuarine regime resulted in export of fine sediment when discharge was high ( 1.7 t s-1) and import when discharge was low ( 0.25 t s-1). Generally, the estuary moved in and out of 40 km of the lower distributary with discharge and tidal phase, and the estuary exhibited salt wedge to partially-mixed conditions. High river discharge and neap tides increased stratification of salinity and suspended sediment. Suspended sediment was influenced by seasonal and tidal fluctuations in near-bed shear stress and the intermittent presence of a protective salt wedge and associated estuary turbidity maximum. This fluctuating flow and salinity regime induced variations in flocculation, settling, and trapping of sediment within the river channel. Above the estuary, particles were pre-flocculated, and within and near the estuary, increased flocculation promoted particle settling. The degree of aggregation and settling velocity of suspended particles were largest during ebb tides of high river discharge and during flood tides of low river discharge. Sediment deposited on the river bed was protected from resuspension by lowered bed stress within and near the salt wedge. These patterns promote retention of mud in the lower river when estuarine processes exist and mud export when fluvial processes dominate. The spectrum of present conditions analyzed collaboratively with field studies, remotely sensed observations, and modeling has shed light on how this environment, and other large tropical deltas, will react to changing magnitudes of fluvial and marine influences due to sea-level rise and anthropogenic alterations to the delta.

In-Well Sediment Incubators to Evaluate Microbial Community Stability and Dynamics following Bioimmobilization of Uranium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baldwin, Brett R.; Peacock, Aaron D.; Gan, M.

2009-09-23

An in-situ incubation device (ISI) was developed in order to investigate the stability and dynamics of sediment associated microbial communities to prevailing subsurface oxidizing or reducing conditions. Here we describe the use of these devices at the Old Rifle Uranium Mill Tailings Remedial Action (UMTRA) site. During the 7 month deployment oxidized Rifle aquifer background sediments (RABS) were deployed in previously biostimulated wells under iron reducing conditions, cell densities of known iron reducing bacteria including Geobacteraceae increased significantly showing the microbial community response to local subsurface conditions. PLFA profiles of RABS following in situ deployment were strikingly similar to thosemore » of adjacent sediment cores suggesting ISI results could be extrapolated to the native material of the test plots. Results for ISI deployed reduced sediments showed only slight changes in community composition and pointed toward the ability of the ISIs to monitor microbial community stability and response to subsurface conditions.« less

A High-Resolution Lipid Biomarker Perspective on North Iceland Shelf Marine Climate over the Last Millennium

NASA Astrophysics Data System (ADS)

Harning, D.; Sepúlveda, J.; Andrews, J. T.; Cabedo-Sanz, P.; Belt, S. T.; Marchitto, T. M.; Stoner, J. S.; Geirsdóttir, Á.; Miller, G. H.

2017-12-01

Icelandic climate is vulnerable to variations in the dominance of competing Arctic and Atlantic ocean currents. The boundary between these water masses delineates the Polar Front, which today occupies the North Iceland Shelf (NIS). To date, Holocene oceanographic reconstructions along the NIS have employed a variety of proxies including Mg/Ca and δ18O of benthic and planktonic foraminifera, quartz and calcite wt%, the alkenone unsaturation index (Uk'37) and biotic species assemblages. Sea surface temperature (SST) proxies are primarily derived from phytoplankton resulting in a seasonal bias toward spring/summer SST. Furthermore, SST proxies can be influenced by additional confounding variables (e.g. salinity, nutrients, depth habitat of biota) resulting in markedly different Holocene temperature reconstructions between proxy datasets. To evaluate the similarities and discrepancies between various marine proxies, we investigate a high-resolution sediment core collected from the central North Iceland Shelf (B997-316GGC, 658 m depth). Sedimentation covers the last millennium, which captures the transition from the Medieval Warm Period to the Little Ice Age. Age control is constrained by 14C dates and paleomagnetic secular variation. To assess marine surface productivity and sea ice conditions, we analyze quartz and calcite wt% via XRD and a series of highly branched isoprenoid biomarkers. Quantitative paleotemperature estimates are derived from a novel combination of Mg/Ca of foraminifera and two lipid biomarker indices, Uk'37 from Prymnesiophyte alkenones and TEX86 from Thaumarchaeota glycerol dialkyl glycerol tetraethers (GDGTs). The latter TEX86 record is the first paleo application in Icelandic waters, which a recent local calibration study suggests may reflect annual or winter sub-surface (0-200 m) temperatures. Our paleotemperature records are bolstered by the analysis of additional sediment core tops, which expand the established Icelandic calibrations. Finally, we perform statistical analyses in an effort to extract a robust record of paleoceanographic change and to test the applicability of various proxies in high-latitude paleoclimate studies.

Estuarine turbidity, flushing, salinity, and circulation

NASA Technical Reports Server (NTRS)

Pritchard, D. W.

1972-01-01

The effects of estuarine turbidity, flushing, salinity, and circulation on the ecology of the Chesapeake Bay are discussed. The sources of fresh water, the variations in salinity, and the circulation patterns created by temperature and salinity changes are analyzed. The application of remote sensors for long term observation of water temperatures is described. The sources of sediment and the biological effects resulting from increased sediments and siltation are identified.

Coupled Geochemical Impacts of Leaking CO2 and Contaminants from Subsurface Storage Reservoirs on Groundwater Quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shao, Hongbo; Qafoku, Nikolla; Lawter, Amanda R.

2015-07-07

The leakage of CO2 and the concomitant saline solutions from deep storage reservoirs to overlying groundwater aquifers is considered one of the major potential risks associated with geologic CO2 sequestration (GCS). Batch and column experiments were conducted to determine the fate of trace metals in groundwater in the scenarios of CO2 and metal contaminated brine leakage. The sediments used in this work were collected from an unconsolidated sand and gravel aquifer in Kansas, and contained 0-4 wt% carbonates. Cd and As were spiked into the reaction system to represent potential contaminants from the reservoir brine that could intrude into groundwatermore » aquifers with leaking CO2 at initial concentrations of 114 and 40 ppb, respectively. Through this research we demonstrated that Cd and As were adsorbed on the sediments, in spite of the lowered pH due to CO2 dissolution in the groundwater. Cd concentrations were well below its MCL in both batch and column studies, even for sediment samples without detectable carbonate to buffer the pH. Arsenic concentrations in the effluent were also significantly lower than influent concentration, suggesting that the sediments tested have the capacity to mitigate the coupled adverse effects of CO2 leakage and brine intrusion. However, the mitigation capacity of sediment is a function of its geochemical properties [e.g., the calcite content; the presence of adsorbed As(III); and the presence of P in the natural sediment]. The competitive adsorption between phosphate and arsenate may result in higher concentrations of As in the aqueous phase.« less

A New Sensitive GC-MS-based Method for Analysis of Dipicolinic Acid and Quantifying Bacterial Endospores in Deep Marine Subsurface Sediment

NASA Astrophysics Data System (ADS)

Fang, J.

2015-12-01

Marine sediments cover more than two-thirds of the Earth's surface and represent a major part of the deep biosphere. Microbial cells and microbial activity appear to be widespread in these sediments. Recently, we reported the isolation of gram-positive anaerobic spore-forming piezophilic bacteria and detection of bacterial endospores in marine subsurface sediment from the Shimokita coalbed, Japan. However, the modern molecular microbiological methods (e.g., DNA-based microbial detection techniques) cannot detect bacterial endospore, because endospores are impermeable and are not stained by fluorescence DNA dyes or by ribosomal RNA staining techniques such as catalysed reporter deposition fluorescence in situ hybridization. Thus, the total microbial cell abundance in the deep biosphere may has been globally underestimated. This emphasizes the need for a new cultivation independent approach for the quantification of bacterial endospores in the deep subsurface. Dipicolinic acid (DPA, pyridine-2,6-dicarboxylic acid) is a universal and specific component of bacterial endospores, representing 5-15wt% of the dry spore, and therefore is a useful indicator and quantifier of bacterial endospores and permits to estimate total spore numbers in the subsurface biosphere. We developed a sensitive analytical method to quantify DPA content in environmental samples using gas chromatography-mass spectrometry. The method is sensitive and more convenient in use than other traditional methods. We applied this method to analyzing sediment samples from the South China Sea (obtained from IODP Exp. 349) to determine the abundance of spore-forming bacteria in the deep marine subsurface sediment. Our results suggest that gram-positive, endospore-forming bacteria may be the "unseen majority" in the deep biosphere.

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin

PubMed Central

Vigneron, Adrien; Cruaud, Perrine; Roussel, Erwan G.; Pignet, Patricia; Caprais, Jean-Claude; Callac, Nolwenn; Ciobanu, Maria-Cristina; Godfroy, Anne; Cragg, Barry A.; Parkes, John R.; Van Nostrand, Joy D.; He, Zhili; Zhou, Jizhong; Toffin, Laurent

2014-01-01

Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Margin subsurface sediments. PMID:25099369

Nitrogen removal through N cycling from sediments in a constructed coastal marsh as assessed by 15N-isotope dilution.

PubMed

Ro, Hee-Myong; Kim, Pan-Gun; Park, Ji-Suk; Yun, Seok-In; Han, Junho

2018-04-01

Constructed coastal marsh regulates land-born nitrogen (N) loadings through salinity-dependent microbial N transformation processes. A hypothesis that salinity predominantly controls N removal in marsh was tested through incubation in a closed system with added- 15 NH 4 + using sediments collected from five sub-marshes in Shihwa marsh, Korea. Time-course patterns of concentrations and 15 N-atom% of soil-N pools were analyzed. Sediments having higher salinity and lower soil organic-C and acid-extractable organic-N exhibited slower rates of N mineralization and immobilization, nitrification, and denitrification. Rates of denitrification were not predicted well by sediment salinity but by its organic-C, indicating heterotrophic denitrification. Denitrification dominated N-loss from this marsh, and nitrogen removal capacity of this marsh was estimated at 337 kg N day -1 (9.9% of the daily N-loadings) considering the current rooting depth of common reeds (1.0 m). We showed that sediment N removal decreases with increasing salinity and can increase with increasing organic-C for heterotrophic denitrification. Copyright © 2018 Elsevier Ltd. All rights reserved.

77 FR 14717 - National Oil and Hazardous Substances Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-13

... preclude future actions under Superfund. This partial deletion pertains to the surface soil, unsaturated subsurface soil, surface water and sediments of Operable Unit (OU) 1, the Gateway Lake Ash Study Area, and.... Surface soil, unsaturated subsurface soil, surface water, and sediments at OU-2, OU-3, OU-4, OU-5, OU-6...

Effect of replacing surface inlets with blind or gravel inlets on sediment and phosphorus subsurface drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline-Alkaline Soils.

PubMed

Liu, Kaihui; Ding, Xiaowei; Tang, Xiaofei; Wang, Jianjun; Li, Wenjun; Yan, Qingyun; Liu, Zhenghua

2018-01-01

Understanding the effects of environmental factors on microbial communities is critical for microbial ecology, but it remains challenging. In this study, we examined the diversity (alpha diversity) and community compositions (beta diversity) of prokaryotes and fungi in hypersaline sediments and salinized soils from northern China. Environmental variables were highly correlated, but they differed significantly between the sediments and saline soils. The compositions of prokaryotic and fungal communities in the hypersaline sediments were different from those in adjacent saline-alkaline soils, indicating a habitat-specific microbial distribution pattern. The macroelements (S, P, K, Mg, and Fe) and Ca were, respectively, correlated closely with the alpha diversity of prokaryotes and fungi, while the macronutrients (e.g., Na, S, P, and Ca) were correlated with the prokaryotic and fungal beta-diversity ( P ≤ 0.05). And, the nine microelements (e.g., Al, Ba, Co, Hg, and Mn) and micronutrients (Ba, Cd, and Sr) individually shaped the alpha diversity of prokaryotes and fungi, while the six microelements (e.g., As, Ba, Cr, and Ge) and only the trace elements (Cr and Cu), respectively, influenced the beta diversity of prokaryotes and fungi ( P < 0.05). Variation-partitioning analysis (VPA) showed that environmental variables jointly explained 55.49% and 32.27% of the total variation for the prokaryotic and fungal communities, respectively. Together, our findings demonstrate that the diversity and community composition of the prokaryotes and fungi were driven by different macro and microelements in saline habitats, and that geochemical elements could more widely regulate the diversity and community composition of prokaryotes than these of fungi.

National assessment of geologic carbon dioxide storage resources: methodology implementation

USGS Publications Warehouse

Blondes, Madalyn S.; Brennan, Sean T.; Merrill, Matthew D.; Buursink, Marc L.; Warwick, Peter D.; Cahan, Steven M.; Corum, Margo D.; Cook, Troy A.; Craddock, William H.; DeVera, Christina A.; Drake II, Ronald M.; Drew, Lawrence J.; Freeman, P.A.; Lohr, Celeste D.; Olea, Ricardo A.; Roberts-Ashby, Tina L.; Slucher, Ernie R.; Varela, Brian A.

2013-01-01

In response to the 2007 Energy Independence and Security Act, the U.S. Geological Survey (USGS) conducted a national assessment of potential geologic storage resources for carbon dioxide (CO2). Storage of CO2 in subsurface saline formations is one important method to reduce greenhouse gas emissions and curb global climate change. This report provides updates and implementation details of the assessment methodology of Brennan and others (2010, http://pubs.usgs.gov/of/2010/1127/) and describes the probabilistic model used to calculate potential storage resources in subsurface saline formations.

Characterization and modeling of sediment settling, consolidation, and suspension to optimize coastal Louisiana restoration

NASA Astrophysics Data System (ADS)

Sha, X.; Xu, K.; Bentley, S. J.; Robichaux, P. A.

2018-04-01

Many research efforts have been undertaken over many decades in the field of Louisiana coastal restoration, but long-term experiments for sediment suspension and consolidation in diversion-receiving basins are still limited, despite significance of this topic to ongoing restoration strategies. Sediment samples were collected from two active diversions on the Mississippi River: West Bay, a semi-enclosed bay located on the Mississippi River Delta and fed by the West Bay Diversion, and from Big Mar pond, a receiving basin of the Caernarvon freshwater diversion from the lower Mississippi River, Louisiana, USA. A dual-core Gust Erosion Microcosm System was used to measure time-series (0.5, 1, 2, 3, 4, 5, and 6-months after initial settling) erodibility at seven shear stress regimes (0.01-0.60 Pa) using experimental cores prepared with two initial sediment concentrations (60 and 120 kg m-3). A 230-cm tall settling column with nine sampling ports was used to measure the consolidation rates for initial sediment concentrations ranging from fluid mud (10 kg m-3) to dredge effluent (120 kg m-3), in combination with two levels of salinity (1 and 5). The erodibility of West Bay sediment decreased with increasing time of consolidation. The critical shear stress for resuspension increased from 0.2 Pa after 2 months to 0.45 Pa after 4 months of consolidation. The consolidation rates were inversely and exponentially related to initial sediment concentrations. Consolidation tests in salinity of 1 generally settled faster than that in salinity of 5, and consolidation tests with low sediment concentration tests generally settled faster than high-concentration tests. An exponential coefficient was added in the Sanford (2008) model to better predict the consolidation profile of both rapid early settling and slow self-weight consolidation processes. Our study suggests that enclosed basin, low salinity, relatively low sediment concentration and minimized disturbance for 4 months all favor of mud deposition and retention, and these factors should be considered in the design of coastal restoration projects such as dredging effluent placements and sediment diversions.

REE in the Great Whale River estuary, northwest Quebec

NASA Technical Reports Server (NTRS)

Goldstein, Steven J.; Jacobsen, Stein B.

1988-01-01

A report on REE concentrations within the estuary of the Great Whale River in northwest Quebec and in Hudson Bay is given, showing concentrations which are less than those predicted by conservative mixing of seawater and river water, indicating removal of REE from solution. REE removal is rapid, occurring primarily at salinities less than 2 percent and ranges from about 70 percent for light REE to no more than 40 percent for heavy REE. At low salinity, Fe removal is essentially complete. The shape of Fe and REE vs. salinity profiles is not consistent with a simple model of destabilization and coagulation of Fe and REE-bearing colloidal material. A linear relationship between the activity of free ion REE(3+) and pH is consistent with a simple ion-exchange model for REE removal. Surface and subsurface samples of Hudson Bay seawater show high REE and La/Yb concentrations relative to average seawater, with the subsurface sample having a Nd concentration of 100 pmol/kg and an epsilon(Nd) of -29.3; characteristics consistent with river inputs of Hudson Bay. This indicates that rivers draining the Canadian Shield are a major source of nonradiogenic Nd and REE to the Atlantic Ocean.

Structure of Subsurface Sediments in the Scan Basin (Scotia Sea)

NASA Astrophysics Data System (ADS)

Schreider, Al. A.; Schreider, A. A.; Sazhneva, A. E.; Galindo-Zaldivar, J.; Ruano, P.; Maldonado, A.; Martos-Martin, Y.; Lobo, F.

2018-01-01

The structure of sediments in the Scotia Sea is used as a basis for reconstructing the geological history of its bottom in the Late Quaternary. The Scan Basin is one of the main elements of the topography of the southern Scotia Sea. Its formation played a considerable role in the fragmentation of the continent, which included the Bruce and Discovery banks. The main parameters of the sediment layer in the Scan Basin have been reconstructed by the present time, but its top part has not been studied. In this work, we analyze the first data obtained on the R/V Gesperidas with the use of a TOPAS PS 18/40 high-resolution seismic profilograph in 2012. Three layers in the subsurface sediments on the bottom of the Scan Basin were specified for the first time. The mean periods of their deposition in the Late Quaternary were determined as 115000 years for the first, 76000 years for the second, and 59 000 years for the third layer from the surface of the bottom. The duration of the total accumulation period of the three layers is about 250000 years.

On the origin of saline soils at Blackspring Ridge, Alberta, Canada

NASA Astrophysics Data System (ADS)

Stein, Richard; Schwartz, Franklin W.

1990-09-01

Problems of soil salinity occur at Blackspring Ridge, Alberta, in four different settings. The most seriously affected area is at the base of the ridge where salinity appears as severe salt crusting on the surface, salt-tolerant vegetation, and areas of poor or no crop production. Blackspring Ridge is a structural bedrock high that is underlain by Upper Cretaceous sediment of the Horseshoe Canyon Formation. Bedrock is overlain by fluvial, glacial, lacustrine, and aeolian sediment. Piezometric data indicate that groundwater is recharged on and along the upper flanks of Blackspring Ridge and discharges in southern parts of a lacustrine plain that surrounds the ridge. Hydraulic conductivity data, water-level fluctuations, stable isotopes, and hydrochemical data indicate that the fractured near-surface bedrock and overlying thin-drift sediment constitute a zone of active groundwater flow within which salts are generated and transported. Water discharging from this shallow system evaporates and forms saline areas at the base of the ridge. The most seriously affected areas on the lacustrine plain coincide with places where the water table is less than 1.5m from the ground surface. A high water table occurs locally because of the changing topology of geologic units, and lows in the topographic surface that focus groundwater and surface water flows. Some proportion of the shallow groundwater salinized by evaporation is also transported down the flow system where it mixes with unevaporated water. Surface water, from snowmelt and precipitation events, dissolves salt that was deposited at the surface by evaporating groundwater and redistributes the salt to areas of lower elevation.

Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah

USGS Publications Warehouse

Boyd, Eric S.; Yu, Ri-Qing; Barkay, Tamar; Hamilton, Trinity L.; Baxter, Bonnie K.; Naftz, David L.; Marvin-DiPasquale, Mark

2017-01-01

Surface water and biota from Great Salt Lake (GSL) contain some of the highest documented concentrations of total mercury (THg) and methylmercury (MeHg) in the United States. In order to identify potential biological sources of MeHg and controls on its production in this ecosystem, THg and MeHg concentrations, rates of Hg(II)-methylation and MeHg degradation, and abundances and compositions of archaeal and bacterial 16 rRNA gene transcripts were determined in sediment along a salinity gradient in GSL. Rates of Hg(II)-methylation were inversely correlated with salinity and were at or below the limits of detection in sediment sampled from areas with hypersaline surface water. The highest rates of Hg(II)-methylation were measured in sediment with low porewater salinity, suggesting that benthic microbial communities inhabiting less saline environments are supplying the majority of MeHg in the GSL ecosystem. The abundance of 16S rRNA gene transcripts affiliated with the sulfate reducer Desulfobacterium sp. was positively correlated with MeHg concentrations and Hg(II)-methylation rates in sediment, indicating a potential role for this taxon in Hg(II)-methylation in low salinity areas of GSL. Reactive inorganic Hg(II) (a proxy used for Hg(II) available for methylation) and MeHg concentrations were inversely correlated with salinity. Thus, constraints imposed by salinity on Hg(II)-methylating populations and the availability of Hg(II) for methylation are inferred to result in higher MeHg production potentials in lower salinity environments. Benthic microbial MeHg degradation was also most active in lower salinity environments. Collectively, these results suggest an important role for sediment anoxia and microbial sulfate reducers in the production of MeHg in low salinity GSL sub-habitats and may indicate a role for salinity in constraining Hg(II)-methylation and MeHg degradation activities by influencing the availability of Hg(II) for methylation.

How organic carbon derived from multiple sources contributes to carbon sequestration processes in a shallow coastal system?

PubMed Central

Watanabe, Kenta; Kuwae, Tomohiro

2015-01-01

Carbon captured by marine organisms helps sequester atmospheric CO2, especially in shallow coastal ecosystems, where rates of primary production and burial of organic carbon (OC) from multiple sources are high. However, linkages between the dynamics of OC derived from multiple sources and carbon sequestration are poorly understood. We investigated the origin (terrestrial, phytobenthos derived, and phytoplankton derived) of particulate OC (POC) and dissolved OC (DOC) in the water column and sedimentary OC using elemental, isotopic, and optical signatures in Furen Lagoon, Japan. Based on these data analysis, we explored how OC from multiple sources contributes to sequestration via storage in sediments, water column sequestration, and air–sea CO2 exchanges, and analyzed how the contributions vary with salinity in a shallow seagrass meadow as well. The relative contribution of terrestrial POC in the water column decreased with increasing salinity, whereas autochthonous POC increased in the salinity range 10–30. Phytoplankton-derived POC dominated the water column POC (65–95%) within this salinity range; however, it was minor in the sediments (3–29%). In contrast, terrestrial and phytobenthos-derived POC were relatively minor contributors in the water column but were major contributors in the sediments (49–78% and 19–36%, respectively), indicating that terrestrial and phytobenthos-derived POC were selectively stored in the sediments. Autochthonous DOC, part of which can contribute to long-term carbon sequestration in the water column, accounted for >25% of the total water column DOC pool in the salinity range 15–30. Autochthonous OC production decreased the concentration of dissolved inorganic carbon in the water column and thereby contributed to atmospheric CO2 uptake, except in the low-salinity zone. Our results indicate that shallow coastal ecosystems function not only as transition zones between land and ocean but also as carbon sequestration filters. They function at different timescales, depending on the salinity, and OC sources. PMID:25880367

Phosphate-Induced Immobilization of Uranium in Hanford Sediments.

PubMed

Pan, Zezhen; Giammar, Daniel E; Mehta, Vrajesh; Troyer, Lyndsay D; Catalano, Jeffrey G; Wang, Zheming

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred only at high initial U(VI) (>25 μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.

Phosphate-Induced Immobilization of Uranium in Hanford Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Zezhen; Giammar, Daniel E.; Mehta, Vrajesh

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred onlymore » at high initial U(VI) (>25 μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.« less

Phosphate-Induced Immobilization of Uranium in Hanford Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Zezhen; Giammar, Daniel E.; Mehta, Vrajesh

2016-12-20

Phosphate can be added to subsurface environments to immobilize U(VI) contamination. The efficacy of immobilization depends on the site-specific groundwater chemistry and aquifer sediment properties. Batch and column experiments were performed with sediments from the Hanford 300 Area in Washington State and artificial groundwater prepared to emulate the conditions at the site. Batch experiments revealed enhanced U(VI) sorption with increasing phosphate addition. X-ray absorption spectroscopy measurements of samples from the batch experiments found that U(VI) was predominantly adsorbed at conditions relevant to the column experiments and most field sites (low U(VI) loadings, <25 μM), and U(VI) phosphate precipitation occurred onlymore » at high initial U(VI) (>25μM) and phosphate loadings. While batch experiments showed the transition of U(VI) uptake from adsorption to precipitation, the column study was more directly relevant to the subsurface environment because of the high solid:water ratio in the column and the advective flow of water. In column experiments, nearly six times more U(VI) was retained in sediments when phosphate-containing groundwater was introduced to U(VI)-loaded sediments than when the groundwater did not contain phosphate. This enhanced retention persisted for at least one month after cessation of phosphate addition to the influent fluid. Sequential extractions and laser-induced fluorescence spectroscopy of sediments from the columns suggested that the retained U(VI) was primarily in adsorbed forms. These results indicate that in situ remediation of groundwater by phosphate addition provides lasting benefit beyond the treatment period via enhanced U(VI) adsorption to sediments.« less

An overview of impact of subsurface drainage project studies on salinity management in developing countries

NASA Astrophysics Data System (ADS)

Tiwari, Priyanka; Goel, Arun

2017-05-01

Subsurface drainage has been used for more than a century to keep water table at a desired level of salinity and waterlogging control. This paper has been focused on the impact assessment of pilot studies in India and some other countries from 1969 to 2014 . This review article may prove quite useful in deciding the installation of subsurface drainage project depending on main design parameters, such as drain depth and drain spacing, installation area and type of used outlet. A number of pilot studies have been taken up in past to solve the problems of soil salinity and waterlogging in India. The general guidelines that arise on the behalf of this review paper are to adapt drain depth >1.2 m and spacing depending on soil texture classification, i.e., 100-150 m for light-textured soils, 50-100 m for medium-textured soils and 30-50 m heavy-textured soils, for better result obtained from the problem areas in Indian soil and climatic conditions. An attempt has been made in the manner of literature survey to highlight the salient features of these studies, and it is hopeful to go a long way in selecting design parameters for subsurface drainage problems in the future with similar soil, water table and climatic conditions.

Isotopic identification of the source of methane in subsurface sediments of an area surrounded by waste disposal facilities

USGS Publications Warehouse

Hackley, Keith C.; Liu, Chao-Li; Trainor, D.

1999-01-01

The major source of methane (CH4) in subsurface sediments on the property of a former hazardous waste treatment facility was determined using isotopic analyses measured on CH4 and associated groundwater. The site, located on an earthen pier built into a shallow wetland lake, has had a history of waste disposal practices and is surrounded by landfills and other waste management facilities. Concentrations of CH4 up to 70% were found in the headspace gases of several piezometers screened at 3 different depths (ranging from 8 to 17 m) in lacustrine and glacial till deposits. Possible sources of the CH4 included a nearby landfill, organic wastes from previous impoundments and microbial gas derived from natural organic matter in the sediments. Isotopic analyses included ??13C, ??D, 14C, and 3H on select CH4 samples and ??D and ??18O on groundwater samples. Methane from the deepest glacial till and intermediate lacustrine deposits had ??13C values from -79 to -82???, typical of natural 'drift gas' generated by microbial CO2-reduction. The CH4 from the shallow lacustrine deposits had ??13C values from -63 to -76???, interpreted as a mixture between CH4 generated by microbial fermentation and the CO2-reduction processes within the subsurface sediments. The ??D values of all the CH4 samples were quite negative ranging from -272 to -299???. Groundwater sampled from the deeper zones also showed quite negative ??D values that explained the light ??D observed for the CH4. Radiocarbon analyses of the CH4 showed decreasing 14C activity with depth, from a high of 58 pMC in the shallow sediments to 2 pMC in the deeper glacial till. The isotopic data indicated the majority of CH4 detected in the fill deposits of this site was microbial CH4 generated from naturally buried organic matter within the subsurface sediments. However, the isotopic data of CH4 from the shallow piezometers was more variable and the possibility of some mixing with oxidized landfill CH4 could not be completely ruled out.

Salinity anomaly as a trigger for ENSO events

PubMed Central

Zhu, Jieshun; Huang, Bohua; Zhang, Rong-Hua; Hu, Zeng-Zhen; Kumar, Arun; Balmaseda, Magdalena A.; Marx, Lawrence; Kinter III, James L.

2014-01-01

According to the classical theories of ENSO, subsurface anomalies in ocean thermal structure are precursors for ENSO events and their initial specification is essential for skillful ENSO forecast. Although ocean salinity in the tropical Pacific (particularly in the western Pacific warm pool) can vary in response to El Niño events, its effect on ENSO evolution and forecasts of ENSO has been less explored. Here we present evidence that, in addition to the passive response, salinity variability may also play an active role in ENSO evolution, and thus important in forecasting El Niño events. By comparing two forecast experiments in which the interannually variability of salinity in the ocean initial states is either included or excluded, the salinity variability is shown to be essential to correctly forecast the 2007/08 La Niña starting from April 2007. With realistic salinity initial states, the tendency to decay of the subsurface cold condition during the spring and early summer 2007 was interrupted by positive salinity anomalies in the upper central Pacific, which working together with the Bjerknes positive feedback, contributed to the development of the La Niña event. Our study suggests that ENSO forecasts will benefit from more accurate salinity observations with large-scale spatial coverage. PMID:25352285

Salinity anomaly as a trigger for ENSO events.

PubMed

Zhu, Jieshun; Huang, Bohua; Zhang, Rong-Hua; Hu, Zeng-Zhen; Kumar, Arun; Balmaseda, Magdalena A; Marx, Lawrence; Kinter, James L

2014-10-29

According to the classical theories of ENSO, subsurface anomalies in ocean thermal structure are precursors for ENSO events and their initial specification is essential for skillful ENSO forecast. Although ocean salinity in the tropical Pacific (particularly in the western Pacific warm pool) can vary in response to El Niño events, its effect on ENSO evolution and forecasts of ENSO has been less explored. Here we present evidence that, in addition to the passive response, salinity variability may also play an active role in ENSO evolution, and thus important in forecasting El Niño events. By comparing two forecast experiments in which the interannually variability of salinity in the ocean initial states is either included or excluded, the salinity variability is shown to be essential to correctly forecast the 2007/08 La Niña starting from April 2007. With realistic salinity initial states, the tendency to decay of the subsurface cold condition during the spring and early summer 2007 was interrupted by positive salinity anomalies in the upper central Pacific, which working together with the Bjerknes positive feedback, contributed to the development of the La Niña event. Our study suggests that ENSO forecasts will benefit from more accurate salinity observations with large-scale spatial coverage.

Optimal Electromagnetic (EM) Geophysical Techniques to Map the Concentration of Subsurface Ice and Adsorbed Water on Mars and the Moon

NASA Astrophysics Data System (ADS)

Stillman, D. E.; Grimm, R. E.

2013-12-01

Water ice is ubiquitous in our Solar System and is a probable target for planetary exploration. Mapping the lateral and vertical concentration of subsurface ice from or near the surface could determine the origin of lunar and martian ice and quantify a much-needed resource for human exploration. Determining subsurface ice concentration on Earth is not trivial and has been attempted previously with electrical resistivity tomography (ERT), ground penetrating radar (GPR), airborne EM (AEM), and nuclear magnetic resonance (NMR). These EM geophysical techniques do not actually detect ice, but rather the absence of unfrozen water. This causes a non-unique interpretation of frozen and dry subsurface sediments. This works well in the arctic because most locations are not dry. However, for planetary exploration, liquid water is exceedingly rare and subsurface mapping must discriminate between an ice-rich and a dry subsurface. Luckily, nature has provided a unique electrical signature of ice: its dielectric relaxation. The dielectric relaxation of ice creates a temperature and frequency dependence of the electrical properties and varies the relative dielectric permittivity from ~3.1 at radar frequencies to >100 at low frequencies. On Mars, sediments smaller than silt size can hold enough adsorbed unfrozen water to complicate the measurement. This is because the presence of absorbed water also creates frequency-dependent electrical properties. The dielectric relaxation of adsorbed water and ice can be separated as they have different shapes and frequency ranges as long as a spectrum spanning the two relaxations is measured. The volume concentration of ice and adsorbed water is a function of the strength of their relaxations. Therefore, we suggest that capacitively-coupled dielectric spectroscopy (a.k.a. spectral induced polarization or complex resistivity) can detect the concentration of both ice and adsorbed water in the subsurface. To prove this concept we have collected dielectric spectroscopy at the Cold Regions Research and Engineering Laboratory (CRREL) permafrost tunnel in Fox, AK. We were able to detect the ice relaxation in the subsurface despite the considerable amount of subsurface unfrozen water due to the presence of montmorillonite clay and much warmer temperatures than Mars or permanently shadowed regions of the Moon. While dielectric spectroscopy can be used to determine ice and adsorbed water content it does not possess the high resolution mapping capability of a GPR. Moreover, GPR cannot detect subsurface ice content in ice-sediment mixtures as evidenced in the interpretation of the Medusae Fossae Formation. Orbital radar surveys show this unit has a low attenuation and a dielectric permittivity near 4. This allows the formation to be interpreted as ice-rich or a dry high-porosity volcanic tuff unit. Therefore, combining GPR and dielectric spectroscopy will enable high-resolution structural and volatile mapping of the subsurface. Furthermore, the addition of neutron spectroscopy would add total hydrogen abundance in the top meter. This could lead to the determination of how much hydrogen resides in ice, adsorbed water, and minerals.

Sulfur reduction in sediments of marine and evaporite environments

NASA Technical Reports Server (NTRS)

Klug, M. J.; Boston, P.; Francois, R.; Gyure, R. A.; Javor, B.; Tribble, G.; Vairavamurthy, A.

1985-01-01

Transformations of sulfur in sediments of ponds ranging in salinities from that of normal seawater to those of brines saturated with sodium chloride were examined. The chemistry of the sediment and pore waters were focused on with emphasis on the fate of sulfate reduction. The effects of increasing salinity on both forms of sulfur and microbial activity were determined. A unique set of chemical profiles and sulfate-reducing activity was found for the sediments of each of the sites examined. The quantity of organic matter in the salt pond sediments was significantly greater than that occurring in the adjacent intertidal site. The total quantitative and qualitative distribution of volatile fatty acids was also greater in the salt ponds. Volatile fatty acids increased with salinity.

The influence of salinity on metal uptake and effects in the midge Chironomus maddeni.

PubMed

Bidwell, Joseph R; Gorrie, John R

2006-01-01

The influence of different porewater salinities (up to 12 g/L) on the toxicity and bioaccumulation of copper, zinc and lead from metal-spiked sediments was assessed using the midge, Chironomus maddeni. Survival of the larvae was significantly reduced at a porewater salinity of 12 g/L, but no effects were observed at 4 or 8 g/L. Both growth and survival of C. maddeni were reduced after exposure to salt/metal spiked sediments as compared to those exposed to sediments spiked with metals or salt alone. Increased salinity resulted in increased bioaccumulation of copper and zinc, but decreased bioaccumulation of lead. The observed patterns of bioaccumulation were not entirely explained by the modelled free ion activities of the metals, indicating that factors such as osmotic stress, consumption of metal-contaminated sediments or metal interactions may have been important as well. These results highlight the need to consider the influence of existing or potential salinization when undertaking hazard assessments of freshwater systems impacted by contaminants such as trace metals.

Nutrients removal and substrate enzyme activities in vertical subsurface flow constructed wetlands for mariculture wastewater treatment: Effects of ammonia nitrogen loading rates and salinity levels.

PubMed

Li, Meng; Liang, Zhenlin; Callier, Myriam D; Roque d'orbcastel, Emmanuelle; Sun, Guoxiang; Ma, Xiaona; Li, Xian; Wang, Shunkui; Liu, Ying; Song, Xiefa

2018-06-01

This study aims to investigate the effects of ammonia nitrogen loading rates and salinity levels on nutrients removal rates and substrate enzyme activities of constructed wetland (CW) microcosms planted with Salicornia bigelovii treating mariculture wastewater. Activities of urease (UA), dehydrogenase (DA), protease (PrA) and phosphatase (PA) were considered. Using principal component analysis (PCA), nutrient removal index (NRI) and enzyme activity index (EAI) were developed to evaluate the effects. The results revealed that increasing ammonia nitrogen loading rates had positive effects on nitrogen removal rates (i.e. NH 4 -N and DIN) and enhanced substrate enzyme activities. Compared with low salinity (i.e. 15 and 22), high salinity levels (i.e. 29 and 36) enhanced nutrients removal rates, DA and UA, but weaken PA and PrA. In conclusion, CW microcosms with Salicornia bigelovii can be used for the removal of nutrients under a range of ammonia nitrogen loadings and high salinity levels. Copyright © 2018 Elsevier Ltd. All rights reserved.

Polynuclear Aromatic Hydrocarbons and Toxicity of Sediments from the Elizabeth River, Hampton Roads, Virginia

DTIC Science & Technology

1984-10-01

solid phase experiment, the shrimp were exposed to high (35 ppt) or law (10 ppt) salinities for 24 hours to test osmoregulation capacities. The...of sediments from these stations are rather low. Significant osmoregulation and, to a lesser degree, respiration effects were observed during the tests

Molecular evidence of Late Archean archaea and the presence of a subsurface hydrothermal biosphere

PubMed Central

Ventura, Gregory T.; Kenig, Fabien; Reddy, Christopher M.; Schieber, Juergen; Frysinger, Glenn S.; Nelson, Robert K.; Dinel, Etienne; Gaines, Richard B.; Schaeffer, Philippe

2007-01-01

Highly cracked and isomerized archaeal lipids and bacterial lipids, structurally changed by thermal stress, are present in solvent extracts of 2,707- to 2,685-million-year-old (Ma) metasedimentary rocks from Timmins, ON, Canada. These lipids appear in conventional gas chromatograms as unresolved complex mixtures and include cyclic and acyclic biphytanes, C36–C39 derivatives of the biphytanes, and C31–C35 extended hopanes. Biphytane and extended hopanes are also found in high-pressure catalytic hydrogenation products released from solvent-extracted sediments, indicating that archaea and bacteria were present in Late Archean sedimentary environments. Postdepositional, hydrothermal gold mineralization and graphite precipitation occurred before metamorphism (≈2,665 Ma). Late Archean metamorphism significantly reduced the kerogen's adsorptive capacity and severely restricted sediment porosity, limiting the potential for post-Archean additions of organic matter to the samples. Argillites exposed to hydrothermal gold mineralization have disproportionately high concentrations of extractable archaeal and bacterial lipids relative to what is releasable from their respective high-pressure catalytic hydrogenation product and what is observed for argillites deposited away from these hydrothermal settings. The addition of these lipids to the sediments likely results from a Late Archean subsurface hydrothermal biosphere of archaea and bacteria. PMID:17726114

Frequency domain electromagnetic induction survey in the intertidal zone: Limitations of low-induction-number and depth of exploration

NASA Astrophysics Data System (ADS)

Delefortrie, Samuël; Saey, Timothy; Van De Vijver, Ellen; De Smedt, Philippe; Missiaen, Tine; Demerre, Ine; Van Meirvenne, Marc

2014-01-01

Subsurface investigation in the Belgian intertidal zone is severely complicated due to high heterogeneity and tides. Near-surface geophysical techniques can offer assistance since they allow fast surveying and collection of high spatial density data and frequency domain electromagnetic induction (EMI) was chosen for archaeological prospection on the Belgian shore. However, in the intertidal zone the effects of extreme salinity compromise validity of low-induction-number (LIN) approximated EMI data. In this paper, the effects of incursion of seawater on multi-receiver EMI data are investigated by means of survey results, field observations, cone penetration tests and in-situ electrical conductivity measurements. The consequences of LIN approximation breakdown were researched. Reduced depth of investigation of the quadrature-phase (Qu) response and a complex interpretation of the in-phase response were confirmed. Nonetheless, a high signal-to-noise ratio of the Qu response and viable data with regard to shallow subsurface investigation were also evidenced, allowing subsurface investigation in the intertidal zone.

Deep subsurface life in Bengal Fan sediments (IODP Exp. 354)

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Heuer, V. B.; Elvert, M.; Kallmeyer, J.; Kitte, J. A.; Wörmer, L.; Hinrichs, K. U.

2017-12-01

We collected Bengal Fan sediment samples along a 8°N transect during International Ocean Discovery Program Expedition 354 (February - March 2015, Singapore - Colombo, Sri Lanka) to study subseafloor life in this, as yet unstudied, area. Among other biogeochemical parameters, we quantified microbial biomass by analyzing prokaryotic cells using epifluorescence microscopy after detaching cells from the sediment, and bacterial endospores by analyzing the diagnostic biomarker dipicolinic acid (DPA) by detection of fluorescence of the terbium-DPA complex. To gain understanding of total microbial activity, we quantified hydrogen utilization potential of hydrogenase enzymes, which are ubiquitous in subsurface microorganisms, by using a tritium assay. We measured highest cell concentrations of ca. 108 cells g-1 in shallow sediments close to the seafloor. These concentrations are one to two orders of magnitude lower than in most marine continental margin settings [1]. Similar to the global trend [1], cell concentrations decreased with depth according to a power-law function. Endospore concentrations scattered between ca. 105 and 107 cells g-1 sediment at all sites and depths. We could not observe a clear relationship of endospore concentration and sediment depth; instead, it appears to be linked to lithology and total organic carbon content. Bulk Hydrogenase enzyme activity ranged from nmolar to μmolar range of H2 g-1d-1. Similar to previous observations [2], per-cell hydrogen utilization depends on vertical biogeochemical zones, which could be due to the differences in hydrogen utilization requirements/efficiency of the respective metabolic processes such as sulfate reduction, methanogenesis, fermentation etc. Bengal fan is highly dynamic due to channel and levee systems and the sediments are dominated by turbidites, thick sand layers and hemipelagic deposits, which may control biogeochemical zonation. Based on our microbial biomass and activity data, we suggest that the nature, quality and origin of sedimentary material influence the deep subsurface life. [1] Kallmeyer et al., (2012) PNAS 109(40), 16213-16216 [2] Adhikari et al., (2016) Frontiers in Microbiology 7:8

Mercury distribution in ancient and modern sediments of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C. Hans; Pierce, D.E.; Leong, K.W.; Wang, F.F.

1972-01-01

A reconnaissance of surface and subsurface sediments to a maximum depth of 244 feet below the sea floor shows that natural mercury anomalies from 0.2 to 1.3 ppm have been present in northeastern Bering Sea since early Pliocene. The anomalies and mean values are highest in modern beach (maximum 1.3 and mean 0.22 ppm Hg) and nearshore subsurface gravels (maximum 0.6 and mean .06 ppm Hg) along the highly mineralized Seward Peninsula and in organic rich silt (maximum 0.16 and mean 0.10 ppm Hg) throughout the region; the mean values are lowest in offshore sands (0.03 ppm Hg) . Although gold mining may be partially responsible for high mercury levels in the beaches near Nome, Alaska, equally high or greater concentrations of mercury occur in ancient glacial sediments immediately offshore (0.6 ppm) and in modern unpolluted beach sediments at Bluff (0.45 - 1.3 ppm); this indicates that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The background content of mercury (0.03) throughout the central area of northeastern Bering Sea is similar to that elsewhere in the world. The low mean values (0.04 ppm) even immediately offshore from mercury-rich beaches, suggests that in the surface sediments of northeastern Bering Sea, the highest concentrations are limited to the beaches near mercury sources; occasionally, however, low mercury anomalies occur offshore in glacial drift derived from mercury source regions of Chukotka and Seward Peninsula and reworked by Pleistocene shoreline processes. The minimal values offshore may be attributable to beach entrapment of heavy minerals containing mercury and/or dilution effects of modern sedimentation.

Organic carbon source and salinity shape sediment bacterial composition in two China marginal seas and their major tributaries.

PubMed

Wang, Kai; Zou, Li; Lu, Xinxin; Mou, Xiaozhen

2018-08-15

Marginal sea sediments receive organic substrates of different origins, but whether and to what extent sediment microbial communities are reflective of the different sources of organic substrates remain unclear. To address these questions, sediment samples were collected in two connected China marginal seas, i.e., Bohai Sea and Yellow Sea, and their two major tributaries (Yellow River and Liao River). Sediment bacterial community composition (BCC) was examined using 16S rRNA gene pyrosequencing. In addition, physicochemical variables that describe environmental conditions and sediment features were measured. Our results revealed that BCCs changed with salinity and organic carbon (OC) content. Members of Gaiellaceae and Comamonadaceae showed a rapid decrease as salinity and phytoplankton-derived OC increased, while Piscirickettsiaceae and Desulfobulbaceae exhibited an opposite distribution pattern. Differences of riverine vs. marginal sea sediment BCCs could be mostly explained by salinity. However, within the marginal seas, sediment BCC variations were mainly explained by OC-related variables, including terrestrial-derived fatty acids (Terr_FA), phytoplankton-derived polyunsaturated fatty acids (Phyto_PUFA), stable carbon isotopes (δ 13 C), and carbon to nitrogen ratio (C/N). In addition to environmental variables, network analysis suggested that interactions among individual bacterial taxa might be important in shaping sediment BCCs in the studied areas. Copyright © 2018 Elsevier B.V. All rights reserved.

Porewater salinity reveals past lake-level changes in Lake Van, the Earth's largest soda lake.

PubMed

Tomonaga, Yama; Brennwald, Matthias S; Livingstone, David M; Kwiecien, Olga; Randlett, Marie-Ève; Stockhecke, Mona; Unwin, Katie; Anselmetti, Flavio S; Beer, Jürg; Haug, Gerald H; Schubert, Carsten J; Sturm, Mike; Kipfer, Rolf

2017-03-22

In closed-basin lakes, sediment porewater salinity can potentially be used as a conservative tracer to reconstruct past fluctuations in lake level. However, until now, porewater salinity profiles did not allow quantitative estimates of past lake-level changes because, in contrast to the oceans, significant salinity changes (e.g., local concentration minima and maxima) had never been observed in lacustrine sediments. Here we show that the salinity measured in the sediment pore water of Lake Van (Turkey) allows straightforward reconstruction of two major transgressions and a major regression that occurred during the last 250 ka. We observed strong changes in the vertical salinity profiles of the pore water of the uppermost 100 m of the sediments in Lake Van. As the salinity balance of Lake Van is almost at steady-state, these salinity changes indicate major lake-level changes in the past. In line with previous studies on lake terraces and with seismic and sedimentological surveys, we identify two major transgressions of up to +105 m with respect to the current lake level at about 135 ka BP and 248 ka BP starting at the onset of the two previous interglacials (MIS5e and MIS7), and a major regression of about -200 m at about 30 ka BP during the last ice age.

Salinity is a key factor driving the nitrogen cycling in the mangrove sediment.

PubMed

Wang, Haitao; Gilbert, Jack A; Zhu, Yongguan; Yang, Xiaoru

2018-08-01

Coastal ecosystems are hotspots for nitrogen cycling, and specifically for nitrogen removal from water and sediment through the coupled nitrification-denitrification process. Salinity is globally important in structuring bacterial and archaeal communities, but the association between salinity and microbially-mediated nitrification and denitrification remains unclear. The denitrification activity and composition and structure of microbial nitrifiers and denitrifiers were characterized across a gradient of manipulated salinity (0, 10, 20 and 30ppt) in a mangrove sediment. Salinity negatively correlated with both denitrifying activity and the abundance of nirK and nosZ denitrifying genes. Ammonia-oxidizing bacteria (AOB), which dominated nitrification, had significantly greater abundance at intermediate salinity (10 and 20ppt). However, a positive correlation between ammonia concentration and salinity suggested that nitrifying activity might also be inhibited at higher salinity. The community structure of ammonia-oxidizing archaea (AOA) and bacteria (AOB), as well as nirK, nirS and nosZ denitrifying communities, were all significantly correlated with salinity. These changes were also associated with structural shifts in phylogeny. These findings provide a strong evidence that salinity is a key factor that influences the nitrogen transformations in coastal wetlands, indicating that salinity intrusion caused by climate change might have a broader impact on the coastal biospheres. Copyright © 2018 Elsevier B.V. All rights reserved.

Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments

PubMed Central

Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

2016-01-01

The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments. PMID:27301420

Sampling surface and subsurface particle-size distributions in wadable gravel-and cobble-bed streams for analyses in sediment transport, hydraulics, and streambed monitoring

Treesearch

Kristin Bunte; Steven R. Abt

2001-01-01

This document provides guidance for sampling surface and subsurface sediment from wadable gravel-and cobble-bed streams. After a short introduction to streams types and classifications in gravel-bed rivers, the document explains the field and laboratory measurement of particle sizes and the statistical analysis of particle-size distributions. Analysis of particle...

Watershed scale fungal community characterization along a pH gradient in a subsurface environment co-contaminated with uranium and nitrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jasrotia, Puja; Green, Stefan; Canion, Andy

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment co-contaminated with uranium and nitrate at the watershed scale, and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution and diversity of fungi in subsurface groundwater samples were determined using quantitative and semi-quantitative molecular techniques, including quantitative PCR of eukaryotic SSU rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from subsurface. Our results demonstrate that subsurface fungalmore » communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH < 4.5) conditions. Fungal isolates recovered from subsurface sediments were shown to reduce nitrate to nitrous oxide, including cultures of the genus Coniochaeta that were detected in abundance in pyrosequence libraries of site groundwater samples. Denitrifying fungal isolates recovered from the site were classified, and found to be distributed broadly within the phylum Ascomycota, and within a single genus within the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions.« less

Watershed-Scale Fungal Community Characterization along a pH Gradient in a Subsurface Environment Cocontaminated with Uranium and Nitrate

PubMed Central

Jasrotia, Puja; Green, Stefan J.; Canion, Andy; Overholt, Will A.; Prakash, Om; Wafula, Denis; Hubbard, Daniela; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment cocontaminated with uranium and nitrate at the watershed scale and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution, and diversity of fungi in subsurface groundwater samples were determined using quantitative and semiquantitative molecular techniques, including quantitative PCR of eukaryotic small-subunit rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from the subsurface. Our results demonstrate that subsurface fungal communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH <4.5) conditions. Fungal isolates recovered from subsurface sediments, including cultures of the genus Coniochaeta, which were detected in abundance in pyrosequence libraries of site groundwater samples, were shown to reduce nitrate to nitrous oxide. Denitrifying fungal isolates recovered from the site were classified and found to be distributed broadly within the phylum Ascomycota and within a single genus of the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions. PMID:24389927

Unusual Holocene and late Pleistocene carbonate sedimentation in Bear Lake, Utah and Idaho, USA

USGS Publications Warehouse

Dean, W.; Rosenbaum, J.; Skipp, G.; Colman, S.; Forester, R.; Liu, A.; Simmons, K.; Bischoff, J.

2006-01-01

Bear Lake (Utah-Idaho, USA) has been producing large quantities of carbonate minerals of varying mineralogy for the past 17,000 years. The history of sedimentation in Bear Lake is documented through the study of isotopic ratios of oxygen, carbon, and strontium, percent organic carbon, percent CaCO3, X-ray diffraction mineralogy, HCl-leach inorganic geochemistry, and magnetic properties on samples from three piston cores. Historically, the Bear River, the main source of water for Great Salt Lake, did not enter Bear Lake until it was artificially diverted into the lake at the beginning of the 20th century. However, during the last glacial interval, the Bear River did enter Bear Lake depositing red, calcareous, silty clay. About 18,000 years ago, the Bear River became disconnected from Bear Lake. A combination of warmer water, increased evaporation, and increased organic productivity triggered the precipitation of calcium carbonate, first as calcite. As the salinity of the lake increased due to evaporation, aragonite began to precipitate about 11,000 years ago. Aragonite is the dominant mineral that accumulated in bottom sediments of the lake during the Holocene, comprising an average of about 70 wt.% of the sediments. Aragonite formation in a large, cold, oligotrophic, high latitude lake is highly unusual. Lacustrine aragonite usually is found in small, saline lakes in which the salinity varies considerably over time. However, Bear Lake contains endemic ostracodes and fish, which indicate that the chemistry of the lake has remained fairly constant for a long time. Stable isotope data from Holocene aragonite show that the salinity of Bear Lake increased throughout the Holocene, but never reached highly evolved values of ??18O in spite of an evaporation-dominated water balance. Bear Lake hydrology combined with evaporation created an unusual situation that produced large amounts of aragonite, but no evaporite minerals.

Extraction of Seabed/Subsurface Features in a Potential CO2 Sequestration Site in the Southern Baltic Sea, Using Wavelet Transform of High-resolution Sub-Bottom Profiler Data

NASA Astrophysics Data System (ADS)

Tegowski, J.; Zajfert, G.

2014-12-01

Carbon Capture & Storage (CCS) efficiently prevents the release of anthropogenic CO2 into the atmosphere. We investigate a potential site in the Polish Sector of the Baltic Sea (B3 field site), consisting in a depleted oil and gas reservoir. An area ca. 30 x 8 km was surveyed along 138 acoustic transects, realised from R/V St. Barbara in 2012 and combining multibeam echosounder, sidescan sonar and sub-bottom profiler. Preparation of CCS sites requires accurate knowledge of the subsurface structure of the seafloor, in particular deposit compactness. Gas leaks in the water column were monitored, along with the structure of upper sediment layers. Our analyses show the shallow sub-seabed is layered, and quantified the spatial distribution of gas diffusion chimneys and seabed effusion craters. Remote detection of gas-containing surface sediments can be rather complex if bubbles are not emitted directly into the overlying water and thus detectable acoustically. The heterogeneity of gassy sediments makes conventional bottom sampling methods inefficient. Therefore, we propose a new approach to identification, mapping, and monitoring of potentially gassy surface sediments, based on wavelet analysis of echo signal envelopes of a chirp sub-bottom profiler (EdgeTech SB-0512). Each echo envelope was subjected to wavelet transformation, whose coefficients were used to calculate wavelet energies. The set of echo envelope parameters was input to fuzzy logic and c-means algorithms. The resulting classification highlights seafloor areas with different subsurface morphological features, which can indicate gassy sediments. This work has been conducted under EC FP7-CP-IP project No. 265847: Sub-seabed CO2 Storage: Impact on Marine Ecosystems (ECO2).

Sources of suspended sediment in the Lower Roanoke River, NC

NASA Astrophysics Data System (ADS)

Jalowska, A. M.; McKee, B. A.; Rodriguez, A. B.; Laceby, J. P.

2015-12-01

The Lower Roanoke River, NC, extends 220 km from the fall line to the bayhead delta front in the Albemarle Sound. The Lower Roanoke is almost completely disconnected from the upper reaches by a series of dams, with the furthest downstream dam located at the fall line. The dams effectively restrict the suspended sediment delivery from headwaters, making soils and sediments from the Lower Roanoke River basin, the sole source of suspended sediment. In flow-regulated rivers, bank erosion, especially mass wasting, is the major contributor to the suspended matter. Additional sources of the suspended sediment considered in this study are river channel, surface soils, floodplain surface sediments, and erosion of the delta front and prodelta. Here, we examine spatial and temporal variations in those sources. This study combined the use of flow and grain size data with a sediment fingerprinting method, to examine the contribution of surface and subsurface sediments to the observed suspended sediment load along the Lower Roanoke River. The fingerprinting method utilized radionuclide tracers 210Pb (natural atmospheric fallout), and 137Cs (produced by thermonuclear bomb testing). The contributions of surface and subsurface sources to the suspended sediment were calculated with 95% confidence intervals using a Monte-Carlo numerical mixing model. Our results show that with decreasing river slope and changing hydrography along the river, the contribution of surface sediments increases and becomes a main source of sediments in the Roanoke bayhead delta. At the river mouth, the surface sediment contribution decreases and is replaced by sediments eroded from the delta front and prodelta. The area of high surface sediment contribution is within the middle and upper parts of the delta, which are considered net depositional. Our study demonstrates that floodplains, often regarded to be a sediment sink, are also a sediment source, and they should be factored into sediment, carbon and nutrient budgets.

Sedimentological context of the continental sabkhas of Abu Dhabi

NASA Astrophysics Data System (ADS)

Lokier, Stephen; Paul, Andreas; Bixiao, Xin

2017-04-01

For more than half a century, the coastal sabkhas of Abu Dhabi have been the focus of intensive research focusing on deposition, early diagenesis and the role of microbial communities. Given all of this activity, it is somewhat surprising that their continental counterparts have been largely neglected with only a brief mention in larger-scale regional studies. This study redresses this imbalance by documenting the sedimentological, mineralogical and early diagenetic characteristics of continental sabkhas that are hosted in the Rub al Khali desert of the United Arab Emirates. During reconnaissance surveys it has been established that organic-rich microbial mats and evaporite minerals, both similar to those observed in the coastal sabkha, also occur in these continental sabkha settings. Satellite imagery was utilised to identify potential field locations for surface and shallow sub surface investigation; subsequent field reconnaissance established the validity of sites in terms of anthropogenic disruption and accessibility. At each site, surface features were described in detail, particularly with reference to any microbial communities or evaporite crusts; sample pits were dug in order to document sub-surface facies geometries and to recover both sediment and pore water samples for subsequent analysis. In each pit, a range of environmental parameters was measured over a prolonged period, including surface and sub-surface temperatures, ground water salinity and dissolved oxygen. Sediment samples were subjected to a range of analyses in order to establish and quantify primary sediment composition and any early diagenetic mineral phases. The results of this study are used to build an atlas of sedimentary structures and textures that are associated with continental sabkha settings. These observations allow us to establish the defining sedimentological and early diagenetic characteristics that can be employed to identify similar depositional environments in ancient successions. This will, ultimately, enable the development of better reservoir models, in terms of lateral and vertical depositional and petrophysical facies variability, and fluid flow.

Sediment Suspension by Straining-Induced Convection at the Head of Salinity Intrusion

NASA Astrophysics Data System (ADS)

Zhang, Qianjiang; Wu, Jiaxue

2018-01-01

The tidal straining can generate convective motions and exert a periodic modification of turbulence and sediment transport in estuarine and coastal bottom boundary layers. However, the evidence and physics of convection and sediment suspension induced by tidal straining have not been straightforward. To examine these questions, mooring and transect surveys have been conducted in September 2015 in the region of the Yangtze River plume influence. Field observations and scaling analyses indicate an occurrence of convective motions at the head of saline wedge. Theoretical analyses of stratification evolution in the saline wedge show that unstable stratification and resultant convection are induced by tidal straining. Vertical turbulent velocity and eddy viscosity at the head of saline wedge are both larger than their neutral counterparts in the main body, largely enhancing sediment suspension at the head of saline wedge. Moreover, sediment suspension in both neutral and convection-affected flows is supported by the variance of vertical turbulent velocity, rather than the shearing stress. Finally, the stability correction functions in the Monin-Obukhov similarity theory can be simply derived from the local turbulent kinetic energy balance to successfully describe the effects of tidal straining on turbulent length scale, eddy viscosity, and sediment diffusivity in the convection-affected flow. These recognitions may provide novel understanding of estuarine turbidity maxima, and the dynamical structure and processes for coastal hypoxia.

Improved understanding of tributyltin sorption on natural and biochar-amended sediments.

PubMed

Xiao, Xiaoyu; Sheng, G Daniel; Qiu, Yuping

2011-12-01

A poor understanding of tributyltin (TBT) sorption on sediments has hindered an accurate evaluation of its environmental fate. The present study determined TBT sorption by a freshwater sediment (BH) and a coastal marine sediment (TZ) as influenced by pH, salinity, and biochar (BC) amendment into TZ. The isotherms were essentially linear, with K(OC) values in the range of 10(4) to 10(5) L/kg. Tributyltin sorption at pH 3.56 and 8.00 occurred mainly via partitioning. It reached maxima at pH equal to its pK(a) (=6.25) because of added ion exchange. A salinity increase from 5 to 35 practical salinity units enhanced TBT sorption at pH 3.56 and 8.00 on TZ by approximately 30% and on BH by approximately 80%, ascribed to the salting-out effect that reduced the solubilities of tributyltin hydroxide (TBTOH) and tributyltin chloride (TBTCl). At pH 6.25, the same salinity increase reduced TBT sorption on TZ by approximately 20% but enhanced TBT sorption on BH by approximately 35%. This was attributed to the enhancing role of salting out and the reducing role of metal competition for ion exchange. Tributyltin was two orders of magnitude more effectively sorbed by BC than by total organic carbon of TZ, mainly because of the high level of surface area of the BC. Although BC affinity for TBT may be significantly diminished when present in TZ, it was considered to be the primary contributor to TBT sorption from water. Biochar may thus be used to immobilize TBT in sediment for potential remediation. Copyright © 2011 SETAC.

Effects of pH, dissolved organic matter, and salinity on ibuprofen sorption on sediment.

PubMed

Oh, Sanghwa; Shin, Won Sik; Kim, Hong Tae

2016-11-01

Ibuprofen is well known as one of the most frequently detected pharmaceuticals and personal care products (PPCPs) in rivers. However, sorption of ibuprofen onto sediment has not been considered in spite of its high K ow (3.5). In this study, the effects of various environmental conditions such as pH (4, 5.3, and 7), the concentrations of dissolved organic matters (0 to 1.0 mM citrate and urea), salinity (0, 10, 20, and 30 part per thousand), and presence of other PPCP (salicylic acid) on ibuprofen sorption were investigated. Linear model mainly fitted the experimental data for analysis. The distribution coefficient (K d ) in the linear model decreased from 6.76 at pH 4 to near zero at pH 7, indicating that neutral form of ibuprofen at pH below pKa (5.2) was easily sorbed onto the sediment whereas the sorption of anionic form at pH over pKa was not favorable. To investigate the effect of dissolved organic matters (DOMs) on ibuprofen sorption, citrate and urea were used as DOMs. As citrate concentration increased, the K d value decreased but urea did not interrupt the ibuprofen sorption. Citrate has three carboxyl functional groups which can attach easily ibuprofen and hinder its sorption onto sediment. Salinity also affected ibuprofen sorption due to decrease of the solubility of ibuprofen as salinity increased. In competitive sorption experiment, the addition of salicylic acid also led to enhance ibuprofen sorption. Conclusively, ibuprofen can be more easily sorbed onto the acidified sediments of river downstream, especially estuaries or near-shore environment with low DOM concentration.

Immobilization and Natural Attenuation of Arsenic in Surface and Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Choi, S.; Vlassopoulos, D.

2008-12-01

Understanding of molecular-scale biogeochemical processes that control the mobilization and distribution of As and other oxyanions can be used to develop remediation strategies that take advantage of natural geochemical and hydrologic gradients. Arsenic and other toxic oxyanions can be mobilized at low bulk sediment concentrations (ppm range) and thus, treatment technologies are challenged by low contaminant concentrations, widespread sources, variable pH and Eh conditions, and inaccessibility of subsurface environments. In situ chemical amendments to soils and sediments can be used to decrease the mobility and bioaccessibility of As and oxyanions through sorption to, or precipitation with, stabilizing phases. At a site near San Francisco Bay (CA, USA), treatment of As-contaminated soils with sulfate-cement amendments has effectively immobilized As. Laboratory experiments with field soils and spectroscopic characterizations showed that in high pH cement-type treatments, As is precipitated in ettringite-type phases (Ca-Al sulfates), whereas in low pH ferrous sulfate treatments, As is associated with an iron-arsenate phase (angellelite). The presence of As-associated ettringite-type phases in field sediments amended more than a decade ago indicates long-term stability of these neophases, as long as environmental conditions are relatively constant. At sites of subsurface contamination, monitored natural attenuation (MNA) as a remediation approach for As is gaining interest and acceptance. Successful implementation of MNA requires a mechanistic understanding of As sequestration processes and of the subsurface conditions that may enhance or reduce long-term effectiveness. At a former military site (MA, USA), naturally occurring As was mobilized from sediments as a result of reducing conditions from addition of organic carbon as a biodegradation treatment of chlorinated solvents. Elevated As concentrations were not detected further than about 30 m downgradient of the injection, indicating that As sequestration was also occurring by natural processes in the aquifer. Laboratory experiments with aquifer sediments and spectroscopic characterization of reaction products were used to quantify the extent of As(III) sorption and abiotic oxidation to As(V), probably by Mn(III,IV) present in sediment minerals. Interrogation by XANES spectroscopy and analysis of uptake data indicated that sediments have a limited abiotic oxidation capacity for As(III), which did not exceed 30% of the total amount of As sorbed and was estimated at 0.025 to 0.4 mmol/kg sediment. Results indicate that pH-controlled sorption is the primary mechanism for As uptake and sediment capacity for oxidative sorption is limited. As such, MNA may be temporarily effective at this site, depending on the size of the contaminant plume and the rate of groundwater flow.

Viral activities and life cycles in deep subseafloor sediments.

PubMed

Engelhardt, Tim; Orsi, William D; Jørgensen, Bo Barker

2015-12-01

Viruses are highly abundant in marine subsurface sediments and can even exceed the number of prokaryotes. However, their activity and quantitative impact on microbial populations are still poorly understood. Here, we use gene expression data from published continental margin subseafloor metatranscriptomes to qualitatively assess viral diversity and activity in sediments up to 159 metres below seafloor (mbsf). Mining of the metatranscriptomic data revealed 4651 representative viral homologues (RVHs), representing 2.2% of all metatranscriptome sequence reads, which have close translated homology (average 77%, range 60-97% amino acid identity) to viral proteins. Archaea-infecting RVHs are exclusively detected in the upper 30 mbsf, whereas RVHs for filamentous inoviruses predominate in the deepest sediment layers. RVHs indicative of lysogenic phage-host interactions and lytic activity, notably cell lysis, are detected at all analysed depths and suggest a dynamic virus-host association in the marine deep biosphere studied here. Ongoing lytic viral activity is further indicated by the expression of clustered, regularly interspaced, short palindromic repeat-associated cascade genes involved in cellular defence against viral attacks. The data indicate the activity of viruses in subsurface sediment of the Peruvian margin and suggest that viruses indeed cause cell mortality and may play an important role in the turnover of subseafloor microbial biomass. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments.

PubMed

Laverock, Bonnie; Smith, Cindy J; Tait, Karen; Osborn, A Mark; Widdicombe, Steve; Gilbert, Jack A

2010-12-01

Bioturbation is a key process in coastal sediments, influencing microbially driven cycling of nutrients as well as the physical characteristics of the sediment. However, little is known about the distribution, diversity and function of the microbial communities that inhabit the burrows of infaunal macroorganisms. In this study, terminal-restriction fragment length polymorphism analysis was used to investigate variation in the structure of bacterial communities in sediment bioturbated by the burrowing shrimp Upogebia deltaura or Callianassa subterranea. Analyses of 229 sediment samples revealed significant differences between bacterial communities inhabiting shrimp burrows and those inhabiting ambient surface and subsurface sediments. Bacterial communities in burrows from both shrimp species were more similar to those in surface-ambient than subsurface-ambient sediment (R=0.258, P<0.001). The presence of shrimp was also associated with changes in bacterial community structure in surrounding surface sediment, when compared with sediments uninhabited by shrimp. Bacterial community structure varied with burrow depth, and also between individual burrows, suggesting that the shrimp's burrow construction, irrigation and maintenance behaviour affect the distribution of bacteria within shrimp burrows. Subsequent sequence analysis of bacterial 16S rRNA genes from surface sediments revealed differences in the relative abundance of bacterial taxa between shrimp-inhabited and uninhabited sediments; shrimp-inhabited sediment contained a higher proportion of proteobacterial sequences, including in particular a twofold increase in Gammaproteobacteria. Chao1 and ACE diversity estimates showed that taxon richness within surface bacterial communities in shrimp-inhabited sediment was at least threefold higher than that in uninhabited sediment. This study shows that bioturbation can result in significant structural and compositional changes in sediment bacterial communities, increasing bacterial diversity in surface sediments and resulting in distinct bacterial communities even at depth within the burrow. In an area of high macrofaunal abundance, this could lead to alterations in the microbial transformations of important nutrients at the sediment-water interface.

Influence of salinity regime on the food-web structure and feeding ecology of fish species from Mediterranean coastal lagoons

NASA Astrophysics Data System (ADS)

Prado, Patricia; Vergara, Carolina; Caiola, Nuno; Ibáñez, Carles

2014-02-01

Dual δ15N and δ13C analyses and estimates of biomass were used to characterize the food webs of valuable fish species in three coastal lagoons of the Ebro Delta subjected to contrasting salinity regimes (polyhaline in the Tancada lagoon, mesohaline in the Encanyissada and oligohaline in the Clot lagoon). The δ13C signatures of the entire food-web including primary producers, sediment organic matter and consumers showed the most enriched values in the Tancada lagoon (from approx. -4.8‰ in sediments to -19.7‰ in fish) and the most depleted ones in the Clot lagoon (from approx. -11.4‰ in sediments to -25.4‰ in fish), consistent with dominant contributions from marine and continental sources, respectively. For δ15N, particularly high values were detected in the submersed vegetation (11.3 ± 0.3‰) together with more enriched sediment values at lower salinities (by approx. 2.5‰), suggesting that historical loadings of agricultural fertilizers are still retained by the systems and transmitted across trophic levels. Negative relationships between δ15N and salinity were also observed for the amphipod Gammarus aequicauda and the isopod Sphaeroma hookeri, suggesting some consumption of accumulated and resuspended detrital material. In contrast, δ15N signatures of fish showed lower values and inconsistent patterns, possibly because most species have a seasonal use of the lagoons. The biomass of fish species did not show a clear effect of the salinity regime (except for the mosquitofish Gambusia holbrookii), but results for mixing models suggest a diet shift from higher contribution of zooplankton size fractions in the Encanyissada (from 57 to 73%) to macrofauna at the other lagoons (from 40 to 67%). We suggest that alterations in salinity might modify the trophic dynamics of the systems from benthic to planktonic pathways, without large-scale differences in δ15N of fish suggestive of similar trophic levels.

Coastal Circulation and Sediment Dynamics in Hanalei Bay, Kaua'i, Part IV, Measurements of Waves, Currents, Temperature, Salinity, and Turbidity, June-September 2006

USGS Publications Warehouse

Storlazzi, Curt D.; Presto, M. Katherine; Logan, Joshua B.; Field, Michael E.

2008-01-01

High-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity were made in Hanalei Bay, northern Kaua'i, Hawai'i, during the summer of 2006 to better understand coastal circulation, sediment dynamics, and the potential impact of a river flood in a coral reef-lined embayment during quiescent summer conditions. A series of bottommounted instrument packages were deployed in water depths of 10 m or less to collect long-term, high-resolution measurements of waves, currents, water levels, temperature, salinity, and turbidity. These data were supplemented with a series of profiles through the water column to characterize the vertical and spatial variability in water column properties within the bay. These measurements support the ongoing process studies being conducted as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Pacific Coral Reef Project; the ultimate goal is to better understand the transport mechanisms of sediment, larvae, pollutants, and other particles in coral reef settings. Information regarding the USGS study conducted in Hanalei Bay during the 2005 summer is available in Storlazzi and others (2006), Draut and others (2006) and Carr and others (2006). This report, the last part in a series, describes data acquisition, processing, and analysis for the 2006 summer data set.

Coastal circulation and sediment dynamics in Hanalei Bay, Kauai. Part I: Measurements of waves, currents, temperature, salinity and turbidity : June - August, 2005

USGS Publications Warehouse

Storlazzi, Curt D.; Presto, M. Kathy; Logan, Joshua B.; Field, Michael E.

2006-01-01

Introduction: High-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity were made in Hanalei Bay, northern Kauai, Hawaii, during the summer of 2005 to better understand coastal circulation and sediment dynamics in coral reef habitats. A series of bottom-mounted instrument packages were deployed in water depths of 10 m or less to collect long-term, high-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity. These data were supplemented with a series of vertical instrument casts to characterize the vertical and spatial variability in water column properties within the bay. The purpose of these measurements was to collect hydrographic data to learn how waves, currents and water column properties vary spatially and temporally in an embayment that hosts a nearshore coral reef ecosystem adjacent to a major river drainage. These measurements support the ongoing process studies being conducted as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Coral Reef Project; the ultimate goal is to better understand the transport mechanisms of sediment, larvae, pollutants and other particles in coral reef settings. This report, the first part in a series, describes data acquisition, processing and analysis.

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

PubMed Central

Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

2009-01-01

Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

Subsurface sediment contamination during borehole drilling with an air-actuated down-hole hammer.

PubMed

Malard, Florian; Datry, Thibault; Gibert, Janine

2005-10-01

Drilling methods can severely alter physical, chemical, and biological properties of aquifers, thereby influencing the reliability of water samples collected from groundwater monitoring wells. Because of their fast drilling rate, air-actuated hammers are increasingly used for the installation of groundwater monitoring wells in unconsolidated sediments. However, oil entrained in the air stream to lubricate the hammer-actuating device can contaminate subsurface sediments. Concentrations of total hydrocarbons, heavy metals (Cu, Ni, Cr, Zn, Pb, and Cd), and nutrients (particulate organic carbon, nitrogen, and phosphorus) were measured in continuous sediment cores recovered during the completion of a 26-m deep borehole drilled with a down-hole hammer in glaciofluvial deposits. Total hydrocarbons, Cu, Ni, Cr and particulate organic carbon (POC) were all measured at concentrations far exceeding background levels in most sediment cores. Hydrocarbon concentration averaged 124 +/- 118 mg kg(-1) dry sediment (n = 78 samples) with peaks at depths of 8, 14, and 20 m below the soil surface (maximum concentration: 606 mg kg(-1)). The concentrations of hydrocarbons, Cu, Ni, Cr, and POC were positively correlated and exhibited a highly irregular vertical pattern, that probably reflected variations in air loss within glaciofluvial deposits during drilling. Because the penetration of contaminated air into the formation is unpreventable, the representativeness of groundwater samples collected may be questioned. It is concluded that air percussion drilling has strong limitations for well installation in groundwater quality monitoring surveys.

Exploring Liquid Water Beneath Glaciers and Permafrost in Antarctica Through Airborne Electromagnetic Surveys

NASA Astrophysics Data System (ADS)

Auken, E.; Tulaczyk, S. M.; Foley, N.; Dugan, H.; Schamper, C.; Peter, D.; Virginia, R. A.; Sørensen, K.

2015-12-01

Here, we demonstrate how high powered airborne electromagnetic resistivity is efficiently used to map 3D domains of unfrozen water below glaciers and permafrost in the cold regions of the Earth. Exploration in these parts of the world has typically been conducted using radar methods, either ground-based or from an airborne platform. Radar is an excellent method if the penetrated material has a low electrical conductivity, but in materials with higher conductivity, such as sediments with liquid water, the energy is attenuated . Such cases are efficiently explored with electromagnetic methods, which attenuate less quickly in conductive media and can therefore 'see through' conductors and return valuable information about their electrical properties. In 2011, we used a helicopter-borne, time-domain electromagnetic sensor to map resistivity in the subsurface across the McMurdo Dry Valleys (MDV). The MDV are a polar desert in coastal Antarctica where glaciers, permafrost, ice-covered lakes, and ephemeral summer streams coexist. In polar environments, this airborne electromagnetic system excels at finding subsurface liquid water, as water which remains liquid under cold conditions must be sufficiently saline, and therefore electrically conductive. In Taylor Valley, in the MDV, our data show extensive subsurface low resistivity layers beneath higher resistivity layers, which we interpret as cryoconcentrated hypersaline brines lying beneath glaciers and frozen permafrost. These brines appear to be contiguous with surface lakes, subglacial regions, and the Ross Sea, which could indicate a regional hydrogeologic system wherein solutes may be transported between surface reservoirs by ionic diffusion and subsurface flow. The system as of 2011 had a maximum exploration depth of about 300 m. However, newer and more powerful airborne systems can explore to a depth of 500 - 600 m and new ground based instruments will get to 1000 m. This is sufficient to penetrate to the base of almost all coastal Antarctic glaciers. The MDV, where conductive brines exist beneath resistive glacial ice and frozen permafrost, are especially well suited to exploration by airborne electromagnetic, but similarly suitable systems are likely to exist elsewhere in the cryosphere.

Geochemistry of halogens in the Milk River aquifer, Alberta, Canada

USGS Publications Warehouse

Fabryka-Martin, J.; Whittemore, Donald O.; Davis, S.N.; Kubik, P.W.; Sharma, Prakash

1991-01-01

Analytical data are presented for Cl, Br and I on a regional scale for the Milk River aquifer. The three halides show strikingly similar spatial distributions and are highly correlated. Concentrations are low in the freshwater portions of the aquifer but increase by as much as two orders of magnitude along the margins. However, halide ratios reach nearly constant values moving down-gradient, suggesting the dominance of a common subsurface source for these ions. Ratios of Cl/I and Cl/Br are less than those of seawater and fit an origin derived from the diagenesis of organic matter in the sediments. Halide ratios rule out leakage and/or diffusion from the underlying Colorado Group as a major influence on the chemistry; the favored hypothesis is altered connate seawater diffusing from low-permeability units within the Milk River Formation as the primary source of salts. This hypothesis of an internal source has important implications for solute sources in other aquifers affected by saline waters because it does not require the importation of a distant fluid. The 129I/I ratio has a meteoric value in groundwater collected near the recharge area, but ratios for downflow waters are only 8-70% of this value. Due to the 16 Ma half-life of 129I, these data indicate that most of the increase in dissolved I cannot derive from concentration of a meteoric source by ion filtration, but must have a subsurface origin. Concentrations of 129I produced in situ by spontaneous fission of 238U attain measurable levels only in the oldest waters sampled (ages ??? 105 a), in which it may account for nearly 90% of the total dissolved 129I concentration. Water ages based upon 36Cl/Cl data range up to 2 Ma if uncorrected for any dilution by subsurface sources of dead Cl. If one assumes that the subsurface contributions of Cl contribute at least 90% of total Cl in the distal portion, then the 36Cl-based ages are reduced to ??? 1 Ma, somewhat greater than those estimated by hydrodynamic modeling. ?? 1991.

Salt intrusion in tidal wetlands: European willow species tolerate oligohaline conditions

NASA Astrophysics Data System (ADS)

Markus-Michalczyk, Heike; Hanelt, Dieter; Ludewig, Kristin; Müller, David; Schröter, Brigitte; Jensen, Kai

2014-01-01

Tidal wetlands experience salt intrusion due to the effects of climate change. This study clarifies that the European flood plain willows species Salix alba and Salix viminalis tolerate oligohaline conditions. Salix alba L. and Salix viminalis L. are distributed on flood plains up to transitional waters of the oligohaline to the mesohaline estuarine stretch in temperate climates. They experience spatial and temporal variations in flooding and salinity. In the past, willows dominated the vegetation above the mean high water line, attenuated waves and contributed to sedimentation. In recent centuries, human utilization reduced willow stands. Today, the Elbe estuary - a model system for an estuary in temperate zones - exhibits increasing flooding and salinity due to man-induced effects and climatic changes. Willows were described as having no salinity tolerance. In contrast, our soil water salinity measurements at willows in tidal wetlands prove that mature Salix individuals tolerate oligohaline conditions. To assess immature plant salinity tolerance, we conducted a hydroponic greenhouse experiment. Vegetative propagules originating from a freshwater and an oligohaline site were treated in four salinities. Related to growth rates and biomass production, we found interspecific similarities and a salinity tolerance up to salinity 2. Vitality and chlorophyll fluorescence indicated an acclimation of Salix viminalis to oligohaline conditions. We conclude, that the survival of S. alba and S. viminalis and the restoration of willow stands in estuarine flood plains - with regard to wave attenuation and sedimentation - might be possible, despite increasing salinity in times of climate change.

Identification of saline soils with multi-year remote sensing of crop yields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lobell, D; Ortiz-Monasterio, I; Gurrola, F C

2006-10-17

Soil salinity is an important constraint to agricultural sustainability, but accurate information on its variation across agricultural regions or its impact on regional crop productivity remains sparse. We evaluated the relationships between remotely sensed wheat yields and salinity in an irrigation district in the Colorado River Delta Region. The goals of this study were to (1) document the relative importance of salinity as a constraint to regional wheat production and (2) develop techniques to accurately identify saline fields. Estimates of wheat yield from six years of Landsat data agreed well with ground-based records on individual fields (R{sup 2} = 0.65).more » Salinity measurements on 122 randomly selected fields revealed that average 0-60 cm salinity levels > 4 dS m{sup -1} reduced wheat yields, but the relative scarcity of such fields resulted in less than 1% regional yield loss attributable to salinity. Moreover, low yield was not a reliable indicator of high salinity, because many other factors contributed to yield variability in individual years. However, temporal analysis of yield images showed a significant fraction of fields exhibited consistently low yields over the six year period. A subsequent survey of 60 additional fields, half of which were consistently low yielding, revealed that this targeted subset had significantly higher salinity at 30-60 cm depth than the control group (p = 0.02). These results suggest that high subsurface salinity is associated with consistently low yields in this region, and that multi-year yield maps derived from remote sensing therefore provide an opportunity to map salinity across agricultural regions.« less

Possible Climatic Signal Recorded by Alkenone Distributions in Sediments from Freshwater and Saline Lakes on the Skarvsnes and Skallen Areas, Antarctica

NASA Astrophysics Data System (ADS)

Sawada, K.; Takeda, M.; Takano, Y.

2014-12-01

The distribution of long-chain (C37 - C39) alkenones in marine sediment has been well documented to record paleo-sea surface temperatures. The alkenones were also found in sediments of terrestrial saline lakes, and recently the calibrations of alkenone unsaturation indices - temperature have been established in continental areas. Furthermore, these biomarkers have been identified in lacustrine sediments on high-latitudinal terrestrial areas such as Greenland and Antarctica. In the present study, the alkenones were identified in the lacustrine sediment cores in freshwater (Lake Naga-ike) and saline lakes (Lake Suribati and Lake Funazoko) on the Skarvsnes, and a saline lake (Lake Skallen Oh-ike) on the Skallen, Antarctica. Here, we report that the alkenone distribution in the Antarctic lakes was examined as paleotemperature proxy. C37-C38 Tetra- and tri-unsaturated alkenones and C37 tetra- and tri-unsaturated alkenoates are identified in all sediment samples. The C37 di-unsaturated (C37:2) alkenones can be identified in sediments of surface layers (0-15 cm) of Lake Naga-ike and layers of 160-190 cm depth, in which age is ca. 3000 years BP by 14C dating, in Lake Skallen Ohike, and alkenone unsaturation index (UK37) is analyzed from these sediments. By using a calibration obtained from a culture strain Chrysotila lamellosa as reported by Nakamura et al. (2014), paleotemperatures are calculated to be 9.2-15ºC in surface sediments of Lake Naga-ike and 6.8-8.6ºC in Lake Skallen Oh-ike, respectively. The estimated temperatures are concordant with summer temperature of lake waters observed in Lake Naga-ike. Also, the highest concentrations of the alkenones and alkenoates are observed in deeper (older) sediment layers from Lake Naga-ikes, which has not been connected the ocean and intruded sea water. This implies that the alkenones are originated from indigenous biological organism(s) in Antarctic lake water. The class distributions (unsaturation ratios) of alkenones varied with core depths in Lake Naga-ike and Lake Suribati, whereas these are nearly constant with core depths in Lake Funazoko. These variations presumably depended on changes of climatic and environmental conditions in lake water. Thus, it is suggested that the alkenone proxies can be applicable for Antarctic climate changes.

New Insights into Phosphorus Mobilisation from Sulphur-Rich Sediments: Time-Dependent Effects of Salinisation

PubMed Central

van Diggelen, Josepha M. H.; Lamers, Leon P. M.; van Dijk, Gijs; Schaafsma, Maarten J.; Roelofs, Jan G. M.; Smolders, Alfons J. P.

2014-01-01

Internal phosphorus (P) mobilisation from aquatic sediments is an important process adding to eutrophication problems in wetlands. Salinisation, a fast growing global problem, is thought to affect P behaviour. Although several studies have addressed the effects of salinisation, interactions between salinity changes and nutrient cycling in freshwater systems are not fully understood. To tackle eutrophication, a clear understanding of the interacting effects of sediment characteristics and surface water quality is vital. In the present study, P release from two eutrophic sediments, both characterized by high pore water P and very low pore water iron (Fe2+) concentrations, was studied in a long-term aquarium experiment, using three salinity levels. Sediment P release was expected to be mainly driven by diffusion, due to the eutrophic conditions and low iron availability. Unexpectedly, this only seemed to be the driving mechanism in the short term (0–10 weeks). In the long term (>80 weeks), P mobilisation was absent in most treatments. This can most likely be explained by the oxidation of the sediment-water interface where Fe2+ immobilises P, even though it is commonly assumed that free Fe2+ concentrations need to be higher for this. Therefore, a controlling mechanism is suggested in which the partial oxidation of iron-sulphides in the sediment plays a key role, releasing extra Fe2+ at the sediment-water interface. Although salinisation was shown to lower short-term P mobilisation as a result of increased calcium concentrations, it may increase long-term P mobilisation by the interactions between sulphate reduction and oxygen availability. Our study showed time-dependent responses of sediment P mobilisation in relation to salinity, suggesting that sulphur plays an important role in the release of P from FeSx-rich sediments, its biogeochemical effect depending on the availability of Fe2+ and O2. PMID:25369128

Microbial transformations of arsenic: Mobilization from glauconitic sediments to water

USGS Publications Warehouse

Mumford, Adam C.; Barringer, Julia L.; Benzel, William M.; Reilly, Pamela A.; Young, L.Y.

2012-01-01

In the Inner Coastal Plain of New Jersey, arsenic (As) is released from glauconitic sediment to carbon- and nutrient-rich shallow groundwater. This As-rich groundwater discharges to a major area stream. We hypothesize that microbes play an active role in the mobilization of As from glauconitic subsurface sediments into groundwater in the Inner Coastal Plain of New Jersey. We have examined the potential impact of microbial activity on the mobilization of arsenic from subsurface sediments into the groundwater at a site on Crosswicks Creek in southern New Jersey. The As contents of sediments 33–90 cm below the streambed were found to range from 15 to 26.4 mg/kg, with siderite forming at depth. Groundwater beneath the streambed contains As at concentrations up to 89 μg/L. Microcosms developed from site sediments released 23 μg/L of As, and active microbial reduction of As(V) was observed in microcosms developed from site groundwater. DNA extracted from site sediments was amplified with primers for the 16S rRNA gene and the arsenate respiratory reductase gene, arrA, and indicated the presence of a diverse anaerobic microbial community, as well as the presence of potential arsenic-reducing bacteria. In addition, high iron (Fe) concentrations in groundwater and the presence of iron-reducing microbial genera suggests that Fe reduction in minerals may provide an additional mechanism for release of associated As, while arsenic-reducing microorganisms may serve to enhance the mobility of As in groundwater at this site.

Preferential Flow Paths and Recirculation-Disrupting Jets in the Leeside of Self-Forming Coarse-Grained Laboratory Bedforms

NASA Astrophysics Data System (ADS)

Lichtner, D.; Christensen, K. T.; Best, J.; Blois, G.

2014-12-01

Exchange of fluid in the near-subsurface of a streambed is influenced by turbulence in the free flow, as well as by bed topography and permeability. Macro-roughness elements such as bedforms are known to produce pressure gradients that drive fluid into the streambed on their stoss sides and out of the bed on their lee sides. To study the modification of the near-bed flow field by self-forming permeable bedforms, laboratory experiments were conducted in a 5 mm wide flume filled with 1.3 mm glass beads. The narrow width of the flume permitted detailed examination of the fluid exiting the bed immediately downstream of a bedform. Dense 2-D velocity field measurements were gathered using particle image velocimetry (PIV). In up to 8% of instantaneous PIV realizations, the flow at the near-bed presented a component perpendicular to the streambed, indicating flow across the interface. At the downstream side of the bedform, such flow disrupted the mean recirculation pattern that is typically observed in finer sediment beds. It is hypothesized that the coarse grain size and the resulting high bed permeability promote such near-surface jet events. A qualitative analysis of raw image frames indicated that an in-place jostling of sediment is associated with these jets thus suggesting that subsurface flow may be characterized by impulsive events. These observations are relevant to hyporheic exchange rates in coarse sediments and can have strong morphodynamic implications as they can explain the lack of ripples and characteristics of dunes in high permeability gravels. Overall, further study of the flow structure over highly permeable streambeds is needed to understand subsurface exchange and bedform initiation.

Improved characterization of heterogeneous permeability in saline aquifers from transient pressure data during freshwater injection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kang, Peter K.; Lee, Jonghyun; Fu, Xiaojing

Managing recharge of freshwater into saline aquifers requires accurate estimation of the heterogeneous permeability field for maximizing injection and recovery efficiency. Here we present a methodology for subsurface characterization in saline aquifers that takes advantage of the density difference between the injected freshwater and the ambient saline groundwater. We combine high-resolution forward modeling of density-driven flow with an efficient Bayesian geostatistical inversion algorithm. In the presence of a density difference between the injected and ambient fluids due to differences in salinity, the pressure field is coupled to the spatial distribution of salinity. This coupling renders the pressure field transient: themore » time evolution of the salinity distribution controls the density distribution which then leads to a time-evolving pressure distribution. We exploit this coupling between pressure and salinity to obtain an improved characterization of the permeability field without multiple pumping tests or additional salinity measurements. We show that the inversion performance improves with an increase in the mixed convection ratio—the relative importance between viscous forces from injection and buoyancy forces from density difference. Thus, our work shows that measuring transient pressure data at multiple sampling points during freshwater injection into saline aquifers can be an effective strategy for aquifer characterization, key to the successful management of aquifer recharge.« less

Improved characterization of heterogeneous permeability in saline aquifers from transient pressure data during freshwater injection

DOE PAGES

Kang, Peter K.; Lee, Jonghyun; Fu, Xiaojing; ...

2017-05-31

Managing recharge of freshwater into saline aquifers requires accurate estimation of the heterogeneous permeability field for maximizing injection and recovery efficiency. Here we present a methodology for subsurface characterization in saline aquifers that takes advantage of the density difference between the injected freshwater and the ambient saline groundwater. We combine high-resolution forward modeling of density-driven flow with an efficient Bayesian geostatistical inversion algorithm. In the presence of a density difference between the injected and ambient fluids due to differences in salinity, the pressure field is coupled to the spatial distribution of salinity. This coupling renders the pressure field transient: themore » time evolution of the salinity distribution controls the density distribution which then leads to a time-evolving pressure distribution. We exploit this coupling between pressure and salinity to obtain an improved characterization of the permeability field without multiple pumping tests or additional salinity measurements. We show that the inversion performance improves with an increase in the mixed convection ratio—the relative importance between viscous forces from injection and buoyancy forces from density difference. Thus, our work shows that measuring transient pressure data at multiple sampling points during freshwater injection into saline aquifers can be an effective strategy for aquifer characterization, key to the successful management of aquifer recharge.« less

A Field Investigation of Water and Salt Movement in Permafrost and the Active Layer

DTIC Science & Technology

1993-02-01

in the submerged continental shelves of the Arctic and Antarctic land masses where pore water salinities of shelf sediments may exceed that of the...thawed sediments would have wanned at all depths, and permafrost would have started to thaw from both the top and the bottom. Eventually, gas...exploration wells (Osterkamp at al., 1985). Destabilization of gas hydrates (by warming the sediments in the continental shelves) during periods of high

Dynamics of the Seychelles-Chagos Thermocline Ridge

NASA Astrophysics Data System (ADS)

Bulusu, S.

2016-02-01

The southwest tropical Indian Ocean (SWTIO) features a unique, seasonal upwelling of the thermocline also known as the Seychelles-Chagos Thermocline Ridge (SCTR). More recently, this ridge or "dome"-like feature in the thermocline depth at (55°E-65°E, 5°S-12°S) in the SWTIO has been linked to interannual variability in the semi-annual Indian Ocean monsoon seasons as well as the Madden-Julian Oscillation (MJO) and El Niño Southern Oscillation (ENSO). The SCTR is a region where the MJO is associated with strong SST variability. Normally more cyclones are found generated in this SCTR region when the thermocline is deeper, which has a positive relation to the arrival of a downwelling Rossby wave from the southeast tropical Indian Ocean. Previous studies have focused their efforts solely on sea surface temperature (SST) because they determined salinity variability to be low, but with the Soil Moisture and Ocean Salinity (SMOS), and Aquarius salinity missions new insight can be shed on the effects that the seasonal upwelling of the thermocline has on Sea Surface Salinity (SSS). Seasonal SSS anomalies these missions will reveal the magnitude of seasonal SSS variability, while Argo depth profiles will show the link between changes in subsurface salinity and temperature structure. A seasonal increase in SST and a decrease in SSS associated with the downwelling of the thermocline have also been shown to occasionally generate MJO events, an extremely important part of climate variability in the Indian ocean. Satellite derives salinity and Argo data can help link changes in surface and subsurface salinity structure to the generation of the important MJO events. This study uses satellite derived salinity from Soil Moisture and Ocean Salinity (SMOS), and Aquarius to see if these satellites can yield new information on seasonal and interannual surface variability. In this study barrier layer thickness (BLT) estimates will be derived from satellite measurements using a multilinear regression model (MRM). This study will help to improve monsoon modeling and forecasting, two areas that remain highly inaccurate after decades of research work.

Data on subsurface storage of liquid waste near Pensacola, Florida, 1963-1980

USGS Publications Warehouse

Hull, R.W.; Martin, J.B.

1982-01-01

Since 1963, when industrial waste was first injected into the subsurface in northwest Florida, considerable data have been collected relating to the geochemistry of subsurface waste storage. This report presents hydrogeologic data on two subsurface waste storage. This report presents hydrogeologic data on two subsurface storage systems near Pensacola, Fla., which inject liquid industrial waste through deep wells into a saline aquifer. Injection sites are described giving a history of well construction, injection, and testing; geologic data from cores and grab samples; hydrographs of injection rates, volume, pressure, and water levels; and chemical and physical data from water-quality samples collected from injection and monitor wells. (USGS)

Sediment characteristics and water quality in the two hyper-saline lagoons along the Red Sea coast of Saudi Arabia

NASA Astrophysics Data System (ADS)

Rasul, Najeeb; Al-Farawati, Radwan; Al-Harbi, Omer; Naser Qutub, Abdul

2013-04-01

The two hyper-saline Shoaiba lagoons, Khawr ash Shaibah al Masdudah (northern lagoon) and Khawr ash Shaibah al Maftuhah (southern lagoon) have a unique environmental set-up because no rivers or wadis flow into the lagoons and therefore detrital material to the lagoons is lacking and most of the sediments are indigenous carbonates. The biogenic material is mostly derived from coral debris, coralline algae and molluscs abundant in gravel and sand size fractions. The evaporite deposits from the adjoining sabkhas are transported to the lagoon during tidal cycles. Carbonate is abundant in the form of aragonite and High Mg-calcite indicating carbonate to be recent and formed under shallow water conditions. In general, the sediments are the result of the mechanical breakdown of molluscs and coral reefs by either human activity or by coral boring marine organisms and physical processes such as tidal and wind generated currents. Strong currents dominate only the deeper part at the entrance of the lagoons that causes the winnowing of the finer sediments, and its transportation during flooding and ebbing. Shallow depths averaging 3 m, wind and tidal stirring are the main forces preventing the lagoons from developing stratification resulting in a well-mixed body of water. The shallow depth of the lagoons keep the turbidity levels higher, whereas salinity as high as 52 ‰ and water temperature as high as 38 °C helps in the formation of halite at the periphery. The cyclical inundation of sabkhas by a thin sheet of water during tidal cycles is important in understanding the ecological consequence. Mangrove stands in the lagoons act as a source of nutrients to the flora and fauna inhabiting the lagoons. The configurations of the mouth of the lagoons influence the tidal currents, including the sediment and water movement. The tidal current is enhanced as it enters the lagoons, in response to the funneling effect caused by the narrow channel. The current diffuses as the entrance widens. In the case of Khawr ash Shaibah al Masdudah the mouth is wide and it faces the open sea directly, whereas the mouth of Khawr ash Shaibah al Maftuhah, although narrower, the tidal current is only strong until the channel to the lagoon bends almost 90° where the tidal current dissipates, resulting in the restricted water and sediment movement in the lagoon. The coarser sediments are stained gray-black because of a reducing environment and formation of authigenic pyrite. Stagnant condition prevails inside the lagoons because of insufficient exchange of water with the open sea and lack of rainfall causes hyper-saline conditions. Higher salinity values were evident in the shallow waters, whereas oxygen saturation ranged between 77 % (southern lagoon) and 107 % (northern lagoon) which could be attributed to the complex nature of the southern lagoon. Reactive phosphate and nitrite concentrations in the surface waters were low and in many locations under the detection limit reflecting the oligotrophic behaviour of the Red Sea and limited supply of nutrients from adjacent areas. There is an abundant presence of trace metals especially in fine sediments that has the tendency to adsorb the metals more efficiently. There is an inverse correlation between heavy metals and carbonate content in the sediments, and much stronger particularly with Cr, V and Co. The Landsat ETM identifies two depth zones in the lagoons and shows the effects of the influence of flooding and ebbing on the sediment distribution and the extent of the water cover seasonally.

­­Clastic Pipes on Mars: Evidence for a Near Surface Groundwater System

NASA Astrophysics Data System (ADS)

Wheatley, D. F.; Chan, M. A.; Okubo, C. H.

2017-12-01

Clastic pipes, a type of vertical, columnar injectite, occur throughout the terrestrial stratigraphic record and are identified across many Martian terrains. Terrestrial pipe analogs can aid in identifying clastic pipes on Mars to understand their formation processes and their implications for a past near-surface groundwater system. On Earth, clastic pipes form through fluidization of overpressurized sediment. Fluidization occurs when the upward frictional (i.e., drag) forces of escaping fluids overpower the downward acting gravitational force. To create the forces necessary for pipe formation requires overpressurization of a body of water-saturated porous media overlain by a low permeability confining layer. As the pressure builds, the confining layer eventually fractures and the escaping fluids fluidize the porous sediment causing the sediment to behave like a fluid. These specific formation conditions record evidence of a violent release of fluid-suspended sediment including brecciation of the host and sealing material, internal outward grading/sorting that results in a coarser-grained commonly better cemented outer rind, traction structures, and a cylindrical geometry. Pipes form self-organized, dispersed spatial relationships due to the efficient diffusion of overpressured zones in the subsurface and the expulsion of sediment under pressure. Martian pipes occur across the northern lowlands, dichotomy boundary, and southern highlands in various forms of erosional relief ranging from newer eruption structures to eroded cylindrical/conical mounds with raised rims to highly eroded mounds/hills. Similar to terrestrial examples, Martian pipes form in evenly-spaced, self-organized arrangements. The pipes are typically internally massive with a raised outer rim (interpreted as a sorted, coarser-grained, better-cemented rim). This evidence indicates that Martian pipes formed through fluidization, which requires a near-surface groundwater system. Pipes create a window into the subsurface by excavating subsurface sediment and waters. After emplacement, pipes can also act as fluid conduits, channeling post-depositional fluid flow. The preferential porosity and flow paths may make the pipes an ideal exploration target for microbial life.

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria

PubMed Central

Russell, Joseph A.; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F.

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface. PMID:27242705

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria.

PubMed

Russell, Joseph A; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea

PubMed Central

Graw, Michael F.; D'Angelo, Grace; Borchers, Matthew; Thurber, Andrew R.; Johnson, Joel E.; Zhang, Chuanlun; Liu, Haodong; Colwell, Frederick S.

2018-01-01

The deep marine subsurface is a heterogeneous environment in which the assembly of microbial communities is thought to be controlled by a combination of organic matter deposition, electron acceptor availability, and sedimentology. However, the relative importance of these factors in structuring microbial communities in marine sediments remains unclear. The South China Sea (SCS) experiences significant variability in sedimentation across the basin and features discrete changes in sedimentology as a result of episodic deposition of turbidites and volcanic ashes within lithogenic clays and siliceous or calcareous ooze deposits throughout the basin's history. Deep subsurface microbial communities were recently sampled by the International Ocean Discovery Program (IODP) at three locations in the SCS with sedimentation rates of 5, 12, and 20 cm per thousand years. Here, we used Illumina sequencing of the 16S ribosomal RNA gene to characterize deep subsurface microbial communities from distinct sediment types at these sites. Communities across all sites were dominated by several poorly characterized taxa implicated in organic matter degradation, including Atribacteria, Dehalococcoidia, and Aerophobetes. Sulfate-reducing bacteria comprised only 4% of the community across sulfate-bearing sediments from multiple cores and did not change in abundance in sediments from the methanogenic zone at the site with the lowest sedimentation rate. Microbial communities were significantly structured by sediment age and the availability of sulfate as an electron acceptor in pore waters. However, microbial communities demonstrated no partitioning based on the sediment type they inhabited. These results indicate that microbial communities in the SCS are structured by the availability of electron donors and acceptors rather than sedimentological characteristics. PMID:29696012

Inference of lithologic distributions in an alluvial aquifer using airborne transient electromagnetic surveys

USGS Publications Warehouse

Dickinson, Jesse; Pool, D.R.; Groom, R.W.; Davis, L.J.

2010-01-01

An airborne transient electromagnetic (TEM) survey was completed in the Upper San Pedro Basin in southeastern Arizona to map resistivity distributions within the alluvial aquifer. This investigation evaluated the utility of 1D vertical resistivity models of the TEM data to infer lithologic distributions in an alluvial aquifer. Comparisons of the resistivity values and layers in the 1D resistivity models of airborne TEM data to 1D resistivity models of ground TEM data, borehole resistivity logs, and lithologic descriptions in drill logs indicated that the airborne TEM identified thick conductive fine-grained sediments that result in semiconfined groundwater conditions. One-dimensional models of ground-based TEM surveys and subsurface lithology at three sites were used to determine starting models and constraints to invert airborne TEM data using a constrained Marquardt-styleunderparameterized method. A maximum structural resolution of six layers underlain by a half-space was determined from the resistivity structure of the 1D models of the ground TEM data. The 1D resistivity models of the airborne TEM data compared well with the control data to depths of approximately 100 m in areas of thick conductive silt and clay and to depths of 200 m in areas of resistive sand and gravel. Comparison of a 3D interpolation of the 1D resistivity models to drill logs indicated resistive (mean of 65 ohm-m ) coarse-grained sediments along basin margins and conductive (mean of 8 ohm-m ) fine-grained sediments at the basin center. Extents of hydrologically significant thick silt and clay were well mapped by the 1D resistivity models of airborne TEM data. Areas of uncertain lithology remain below conductive fine-grained sediments where the 1D resistivity structure is not resolved: in areas where multiple lithologies have similar resistivity values and in areas of high salinity.

[Laboratory simulation study on the influence of resuspension on the release of mercury from Yangtze estuarine tidal flat].

PubMed

Li, Meng; Bi, Chun-Juan; Zhang, Jing-Jing; Lü, Jin-Gang; Chen, Zhen-Lou

2011-11-01

Using a Particle Environment Simulator, laboratory simulation experiment on the influence of resuspension on the release of mercury from sediments collected from medium tidal flat and low tidal flat in Chongming Dongtan was conducted. Results indicated that the conditions of overlying water changed significantly during resuspension. The concentrations of HgD and HgP were mainly in the rang of 0.152-2.657 microg x L(-1), 0.080-2.722 microg x L(-1) separately. In the resuspension processes, mercury was released from the medium intertidal sediments under the salinity condition of 4.1 per thousand, 8.0 per thousand, 10.0 per thousand, 13.0 per thousand, and from the low intertidal sediments under the salinity condition of 13.0 per thousand. However, the release of mercury from the medium intertidal sediments is not significant under the salinity condition of 4.1 per thousand, 8.0 per thousand, 10.0 per thousand. The salinity of overlying water had an important effect on resuspension. In different salinity condition, the release of mercury was different. And the release of mercury from medium tidal flat and low tidal flat was different during the resuspension periods, the release of mercury from the medium intertidal sediment was significantly higher than the release from the low intertidal sediment. When the rotate speed was (210 +/- 5) r x min(-1), the desorption of mercury significantly increased, thereby the rotate speed had an effect on the release of mercury.

Impacts of the Changjiang diluted water on sinking processes of particulate organic matters in the East China Sea

NASA Astrophysics Data System (ADS)

Sukigara, Chiho; Mino, Yoshihisa; Tripathy, Sarat Chandra; Ishizaka, Joji; Matsuno, Takeshi

2017-12-01

Intensive surveys with repeated CTD and microstructure turbulent observations, water and sediments sampling as well as onboard incubation and sediment trap experiments were conducted to reveal the nitrogen budget in the center of the East China Sea (ECS) during July 2010 and 2011. Low salinity water (Changjiang Diluted Water, CDW) covered the study area in 2010, but not in 2011. Higher chlorophyll a (chl. a) concentration, primary productivity, and downward particle flux in the upper layer were observed in 2010 than those in 2011. Existence of the CDW resulted in a steep pycnocline and an associated subsurface chl. a maximum (SCM) layer directly beneath the CDW. From chemical analyses of particulate carbon and nitrogen contents and isotope ratios, it became apparent that the particles sunk out the euphotic zone in 2010 was primarily originated in the CDW layer and secondly in the SCM layer. Whereas, in 2011, sinking particles were originated in the surface layer but a part of them were decomposed in the bottom of pycnocline. Our findings indicate that the CDW would supply particles into the deep layer and contribute to the downward transport of materials and the efficiency of biological pump in the ECS.

Energy Requirements of Hydrogen-utilizing Microbes: A Boundary Condition for Subsurface Life

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Alperin, Marc J.; Albert, Daniel B.; Martens, Christopher S.

2003-01-01

Microbial ecosystems based on the energy supplied by water-rock chemistry carry particular significance in the context of geo- and astrobiology. With no direct dependence on solar energy, lithotrophic microbes could conceivably penetrate a planetary crust to a depth limited only by temperature or pressure constraints (several kilometers or more). The deep lithospheric habitat is thereby potentially much greater in volume than its surface counterpart, and in addition offers a stable refuge against inhospitable surface conditions related to climatic or atmospheric evolution (e.g., Mars) or even high-energy impacts (e.g., early in Earth's history). The possibilities for a deep microbial biosphere are, however, greatly constrained by life s need to obtain energy at a certain minimum rate (the maintenance energy requirement) and of a certain minimum magnitude (the energy quantum requirement). The mere existence of these requirements implies that a significant fraction of the chemical free energy available in the subsurface environment cannot be exploited by life. Similar limits may also apply to the usefulness of light energy at very low intensities or long wavelengths. Quantification of these minimum energy requirements in terrestrial microbial ecosystems will help to establish a criterion of energetic habitability that can significantly constrain the prospects for life in Earth's subsurface, or on other bodies in the solar system. Our early work has focused on quantifying the biological energy quantum requirement for methanogenic archaea, as representatives of a plausible subsurface metabolism, in anoxic sediments (where energy availability is among the most limiting factors in microbial population growth). In both field and laboratory experiments utilizing these sediments, methanogens retain a remarkably consistent free energy intake, in the face of fluctuating environmental conditions that affect energy availability. The energy yields apparently required by methanogens in these sediment systems for sustained metabolism are about half that previously thought necessary. Lowered energy requirements would imply that a correspondingly greater proportion of the planetary subsurface could represent viable habitat for microorganisms.

Treating nahcolite containing formations and saline zones

DOEpatents

Vinegar, Harold J

2013-06-11

A method for treating a nahcolite containing subsurface formation includes removing water from a saline zone in or near the formation. The removed water is heated using a steam and electricity cogeneration facility. The heated water is provided to the nahcolite containing formation. A fluid is produced from the nahcolite containing formation. The fluid includes at least some dissolved nahcolite. At least some of the fluid is provided to the saline zone.

Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences.

PubMed

Zhang, Xiaoying; Hu, Bill X; Ren, Hejun; Zhang, Jin

2018-08-15

The gradient distribution of microbial communities has been detected in profiles along many natural environments. In a mangrove seedlings inhabited mudflat, the microbes drive a variety of biogeochemical processes and are associated with a dramatically changed environment across the tidal zones of mudflat. A better understanding of microbial composition, diversity and associated functional profiles in relation to physicochemical influences could provide more insights into the ecological functions of microbes in a coastal mangrove ecosystem. In this study, the variation of microbial community along successive tidal flats inhabited by mangrove seedlings were characterized based on the 16S rDNA gene sequences, and then the factors that shape the bacterial and archaeal communities were determined. Results showed that the tidal cycles strongly influence the distribution of bacterial and archaeal communities. Dissimilarity and gradient distribution of microbial communities were found among high tidal flat, mid-low tidal flat and seawater. Discrepancies were also as well observed from the surface to subsurface layers specifically in the high tidal flat. For example, Alphaproteobacteria displayed an increasing trend from low tidal to high tidal flat and vice versa for Deltaproteobacteria; Cyanobacteria and Thaumarchaeota were more dominant in the surface layer than the subsurface. In addition, by classifying the microorganisms into metabolic functional groups, we were able to identify the biogeochemical pathway that was dominant in each zone. The (oxygenic) photoautotrophy and nitrate reduction were enhanced in the mangrove inhabited mid tidal flat. It revealed the ability of xenobiotic metabolism microbes to degrade, transform, or accumulate environmental hydrocarbon pollutants in seawater, increasing sulfur-related respiration from high tidal to low tidal flat. An opposite distribution was found for major nitrogen cycling processes. The shift of both composition and function of microbial communities were significantly related to light, oxygen availability and total dissolved nitrogen instead of sediment types or salinity. Copyright © 2018 Elsevier B.V. All rights reserved.

Settling speeds on flocs in fresh water and seawater

NASA Astrophysics Data System (ADS)

Burban, Pierre-Yves; Xu, Yao-Jun; McNeil, Joe; Lick, Wilbert

1990-10-01

The settling speeds of floes of fine-grained, natural sediments approximately 10-200 μm in diameter have been measured in both fresh water and seawater. These floes were formed at fluid shears of 100, 200, and 400 s-1 and at sediment concentrations of 10, 100, and 400 mg/L, values typical of conditions in the near-shore areas of lakes and oceans, especially during storm conditions. It is demonstrated that the settling speed of a floe is a strong function of fluid shear and sediment concentration as well as of the diameter of the floe, but it is a weak function of salinity. For the same diameter and salinity, floes produced at the lower fluid shears and sediment concentrations have lower settling speeds than do floes produced at higher fluid shears and sediment concentrations. If the conditions of fluid shear and sediment concentration under which the floes were produced are unknown or ignored, it is shown that the settling speed of a floe is a weak function of diameter and salinity.

Uranium and Cesium sorption to bentonite colloids in high salinity and carbonate-rich environments: Implications for radionuclide transport

NASA Astrophysics Data System (ADS)

Tran, E. L.; Teutsch, N.; Klein-BenDavid, O.; Weisbrod, N.

2017-12-01

When radionuclides are leaked into the subsurface due to engineered waste disposal container failure, the ultimate barrier to migration of radionuclides into local aquifers is sorption to the surrounding rock matrix and sediments, which often includes a bentonite backfill. The extent of this sorption is dependent on pH, ionic strength, surface area availability, radionuclide concentration, surface mineral composition, and solution chemistry. Colloidal-sized bentonite particles eroded from the backfill have been shown to facilitate the transport of radionuclides sorbed to them away from their source. Thus, sorption of radionuclides such as uranium and cesium to bentonite surfaces can be both a mobilization or retardation factor. Though numerous studies have been conducted to-date on sorption of radionuclides under low ionic strength and carbonate-poor conditions, there has been little research conducted on the behavior of radionuclides in high salinities and carbonate rich conditions typical of aquifers in the vicinity of some potential nuclear repositories. This study attempts to characterize the sorption properties of U(VI) and Cs to bentonite colloids under these conditions using controlled batch experiments. Results indicated that U(VI) undergoes little to no sorption to bentonite colloids in a high-salinity (TDS= 9000 mg/L) artificial groundwater. This lack of sorption was attributed to the formation of CaUO2(CO3)22- and Ca2UO2(CO3)3 aqueous ions which stabilize the UO22+ ions in solution. In contrast, Cs exhibited greater sorption, the extent to which was influenced greatly by the matrix water's ionic strength and the colloid concentration used. Surprisingly, when both U and Cs were together, the presence of U(VI) in solution decreased Cs sorption, possibly due to the formation of stabilizing CaUO2(CO3)22- anions. The implications of this research are that rather than undergoing colloid-facilitated transport, U(VI) is expected to migrate similarly to a conservative dissolved species under these conditions, and little retardation through sorption onto the surrounding rock matrix is predicted. Cs is expected to undergo more sorption, though U(VI) presence may have a mobilizing effect.

Interannual and Decadal Changes in Salinity in the Oceanic Subtropical Gyres

NASA Astrophysics Data System (ADS)

Bulusu, Subrahmanyam

2017-04-01

There is evidence that the global water cycle has been undergoing an intensification over several decades as a response to increasing atmospheric temperatures, particularly in regions with skewed evaporation - precipitation (E-P) patterns such as the oceanic subtropical gyres. Moreover, observational data (rain gauges, etc.) are quite sparse over such areas due to the inaccessibility of open ocean regions. In this work, a comparison of observational and model simulations are conducted to highlight the potential applications of satellite derived salinity from NASA Aquarius Salinity mission, NASA Soil Moisture and Ocean Salinity (SMOS), and ESA's Soil Moisture Active Passive (SMAP). We explored spatial and temporal salinity changes (and trends) in surface and subsurface in the oceanic subtropical gyres using Argo floats salinity data, Simple Ocean Data Assimilation (SODA) reanalysis, Estimating the Circulations & Climate of the Ocean GECCO (German ECCO) model simulations, and Hybrid Coordinate Ocean Model (HYCOM). Our results based on SODA reanalysis reveals that a positive rising trend in sea surface salinity in the subtropical gyres emphasizing evidence for decadal intensification in the surface forcing in these regions. Zonal drift in the location of the salinity maximum of the south Pacific, north Atlantic, and south Indian regions implies a change in the mean near-surface currents responsible for advecting high salinity waters into the region. Also we found out that an overall salinity increase within the mixed layer, and a subsurface salinity decrease at depths greater than 200m in the global subtropical gyres over 61 years. We determine that freshwater fluxes at the air-sea interface are the primary drivers of the sea surface salinity (SSS) signature over these open ocean regions by quantifying the advective contribution within the surface layer. This was demonstrated through a mixed layer salinity budget in each subtropical gyre based on the vertically integrated advection and entrainment of salt. Our analysis of decadal variability of fluxes into and out of the gyres reveals little change in the strength of the mean currents through this region despite an increase in the annual export of salt in all subtropical gyres, with the meridional component dominating the zonal. This study reveals that the salt content of E-P maximum waters advected into the subtropical gyres is increasing over time. A combination of increasing direct evaporation over the regions with increasing remote evaporation over nearby E-P maxima is believed to be the main driver in increasing salinity of the subtropical oceans, suggesting an intensification of the global water cycle over decadal timescales.

Detection of subsurface-intensified eddies from observations of the sea-surface: a case study for Mediterranean Water Eddies in a long-term high-resolution simulation

NASA Astrophysics Data System (ADS)

Ciani, Daniele; Carton, Xavier; Barbosa Aguiar, Ana Claudia; Peliz, Alvaro; Bashmachnikov, Igor; Ienna, Federico; Chapron, Bertrand

2017-04-01

Subsurface-intensified eddies are ubiquitous in the world ocean. They can be generated by exchanges of water masses between semi-enclosed evaporation basins and the open ocean or by deep convection. Past and recent studies have shown that these eddies are carriers of large amounts of heat and salt, that they are coherent over inter-annual timescales and that they can migrate for several thousands of miles from their origination areas towards the open ocean. Hence, subsurface-intensified eddies can influence the three-dimensional distribution of oceanic tracers at global scale. The synoptic knowledge of the eddies positions and mean pathways is then crucial for evaluating temperature and salinity budgets in the world ocean. At present day, satellite sensors constitute the ideal tool for the synoptic and global scale observations of the ocean. Since they only provide informations on the oceanic surface, we characterized the signatures that subsurface eddies generate at the sea-surface, to determine the extent to which they can be isolated from the surrounding surface turbulence and be considered as a trace of an underlying eddy. We studied the surface signature of subsurface-intensified anticyclones (Mediterranean Water Eddies - Meddies) in a realistic, long-term (20 years) and high resolution simulation (dx = 3 km) based on the ROMS model. The novelty and advantage of this approach is given by the simultaneous availability of the full 3D eddies characteristics, the ones of the background ocean and of the sea-surface (in terms of sea-surface height, temperature and salinity). This also allowed us to speculate on a synergy between different satellite observations for the automatic detection of subsurface eddies from space. The along trajectory properties and surface signatures of more than 90 long-lived Meddies were analyzed. We showed that the Meddies constantly generate positive anomalies in sea-surface height and that these anomalies are principally related to the Meddy potential vorticity structure at depth (around 1000 m below the sea-surface). Such anomalies were long-lived, mostly migrated exhibiting southwestward trajectories, their intensities were O(10 cm) and extended horizontally up to more than 300 km (around 1.5 times the Meddy diameter). On the other hand, the Meddies thermohaline surface signatures proved to be mostly dominated by the local surface conditions and their structure poorly correlated to the Meddy structure at depth (e.g. the Meddy volume-integrated salt and temperature content). These results point out that satellite altimetry is the most suitable approach to track subsurface-intensified eddies from observations of the sea-surface, also encouraging the use of future high-resolution altimetric observations (e.g. SWOT) to detect subsurface oceanic motions from satellite sensors.

Alkenone temperature and salinity: An evaluation of long chain C37 alkenone in Lake Qinghai, China

NASA Astrophysics Data System (ADS)

Liu, W.; Liu, Z.; Fu, M.; An, Z.

2007-12-01

In recently years, the alkenone unsaturation index (Uk'37=C37:.2/(C37:2+ C37:3)) has been used to reconstructed paleo-temperature for lacustrine sediments. However, few studies have addressed whether the relative abundance of the C37:4 alkenone to the total C37 production (C37:4 percent) can reflect surface salinity changes in lake systems. Here we present the distribution of C37 long chain alkenone of modern lake sediments in Qinghai Lake, Qing-Tibet Plateau, to evaluate significance of abundance change of long chain C37 alkenone as an indicator of lake paleo-enviromental evolution. A group of surface sediments from different locations in the lake have been analyzed in this study. The results of long chain C37 alkenone from 28 surface sediments analyses shown relative abundance of C37:4 alkenone to total C37 production (C37:4 percent) change from 14.5 to 48.6 percent and the abundance of C37:4 alkenone is increasing with decreasing salinity of lake water. For the salinity lake in land, we suggested the relative abundance of C37:4 alkenone in lake sediments may be a indicator of paleo-silinity; We have also found that Uk'37 values are weakly correlated with salinity and C37:4 percent changes, implying that potential minor contributions of temperature and salinity effects to C37:4 percent and Uk'37 respectively cannot be excluded in this study. However, since these contributions are weak, we suggest that the C37:4 percent proxy can be used to reconstruct paleo-salinity changes at a regional scale, especially in lake systems, while Uk'37 remains as a powerful tool for reconstructions of paleo-temperature changes in the lake systems.

Mapping saline groundwater beneath the Sea Galilee and its vicinity using time domain electromagnetic (TDEM) geophysical technique

USGS Publications Warehouse

Goldman, M.; Gvirtzman, H.; Hurwitz, S.

2004-01-01

An extensive time domain electromagnetic (TDEM) survey covering the Sea of Galilee with a dense grid of points has been recently carried out. A total of 269 offshore and 33 supplementary onshore TDEM soundings were performed along six N-S and ten W-E profiles and at selected points both offshore and onshore along the whole coastal line. The interpreted resistivities were calibrated with the direct salinity measurements in the Haon-2 borehole and relatively deep (5 m) cores taken from the lake bottom. It was found that resistivities below 1 ohm-m are solely indicative of groundwater salinity exceeding 10,000 mg Cl/l. Such low resistivities (high salinities) were detected at depths greater than 15 m below almost the entire bottom of the lake. At some parts of the lake, particularly in the south, the saline water was detected at shallower depths, sometimes at a few meters below the bottom. Relatively high resistivity (fresh groundwater) was found along the margins of the lake down to roughly 100 m, the maximum exploration depth of the system. The detected sharp lateral contrasts at the lake margin between high and low resistivities coincide with the faults separating the carbonate and clastic units, respectively. The geometry of the fresh/saline groundwater interface below the central part of the lake is very similar to the shape of the lake bottom, probably due to the diffusive salt transport from the bottom sediments to the lake water. The above geophysical observations suggest differentsalt transport mechanisms from the sediments to the central part of the lake (diffusion) and from regional aquifers to the margins of the lake (advection). ?? 2004 Science From Israel/LPPLtd.

Benthic infaunal community structuring in an acidified tropical estuarine system.

PubMed

Hossain, M Belal; Marshall, David J

2014-01-01

Recent studies suggest that increasing ocean acidification (OA) should have strong direct and indirect influences on marine invertebrates. While most theory and application for OA is based on relatively physically-stable oceanic ecological systems, less is known about the effects of acidification on nearshore and estuarine systems. Here, we investigated the structuring of a benthic infaunal community in a tropical estuarine system, along a steep salinity and pH gradient, arising largely from acid-sulphate groundwater inflows (Sungai Brunei Estuary, Borneo, July 2011- June 2012). Preliminary data indicate that sediment pore-water salinity (range: 8.07 - 29.6 psu) declined towards the mainland in correspondence with the above-sediment estuarine water salinity (range: 3.58 - 31.2 psu), whereas the pore-water pH (range: 6.47- 7.72) was generally lower and less variable than the estuarine water pH (range: 5.78- 8.3), along the estuary. Of the thirty six species (taxa) recorded, the polychaetes Neanthes sp., Onuphis conchylega, Nereididae sp. and the amphipod Corophiidae sp., were numerically dominant. Calcified microcrustaceans (e.g., Cyclopoida sp. and Corophiidae sp.) were abundant at all stations and there was no clear distinction in distribution pattern along the estuarine between calcified and non-calcified groups. Species richness increased seawards, though abundance (density) showed no distinct directional trend. Diversity indices were generally positively correlated (Spearman's rank correlation) with salinity and pH (p <0.05) and negatively with clay and organic matter, except for evenness values (p >0.05). Three faunistic assemblages were distinguished: (1) nereid-cyclopoid-sabellid, (2) corophiid-capitellid and (3) onuphid- nereid-capitellid. These respectively associated with lower salinity/pH and a muddy bottom, low salinity/pH and a sandy bottom, and high salinity/pH and a sandy bottom. However, CCA suggested that species distribution and community structuring is more strongly influenced by sediment particle characteristics than by the chemical properties of the water (pH and salinity). Infaunal estuarine communities, which are typically adapted to survive relatively acidic conditions, may be less exposed, less sensitive, and less vulnerable than epibenthic or pelagic communities to further acidification of above-sediment waters. These data question the extent to which all marine infaunal communities, including oceanic communities, are likely to be affected by future global CO2-driven acidification.

Temperature Data Assimilation with Salinity Corrections: Validation for the NSIPP Ocean Data Assimilation System in the Tropical Pacific Ocean, 1993-1998

NASA Technical Reports Server (NTRS)

Troccoli, Alberto; Rienecker, Michele M.; Keppenne, Christian L.; Johnson, Gregory C.

2003-01-01

The NASA Seasonal-to-Interannual Prediction Project (NSIPP) has developed an Ocean data assimilation system to initialize the quasi-isopycnal ocean model used in our experimental coupled-model forecast system. Initial tests of the system have focused on the assimilation of temperature profiles in an optimal interpolation framework. It is now recognized that correction of temperature only often introduces spurious water masses. The resulting density distribution can be statically unstable and also have a detrimental impact on the velocity distribution. Several simple schemes have been developed to try to correct these deficiencies. Here the salinity field is corrected by using a scheme which assumes that the temperature-salinity relationship of the model background is preserved during the assimilation. The scheme was first introduced for a zlevel model by Troccoli and Haines (1999). A large set of subsurface observations of salinity and temperature is used to cross-validate two data assimilation experiments run for the 6-year period 1993-1998. In these two experiments only subsurface temperature observations are used, but in one case the salinity field is also updated whenever temperature observations are available.

Effect of salinity on metal mobility in Sečovlje salina sediment (northern Adriatic, Slovenia)

NASA Astrophysics Data System (ADS)

Kovač, N.; Ramšak, T.; Glavaš, N.; Dolenec, M.; Rogan Šmuc, N.

2016-12-01

Saline sediment (saline healing mud or "fango") from the Sečovlje Salina (northern Adriatic, Slovenia) is traditionally used in the coastal health resorts as a virgin material for medical treatment, wellness and relax purposes. Therapeutic qualities of the healing mud depend on its mineralogical composition and physical, mineralogical, geochemical and biological properties. Their microbial and potentially toxic elements contamination are the most important features affecting user safety. However, the degree of metal toxicity (and its regulation) for natural healing mud is still under discussion. Therefore, the influence of the overlying water salinity on the mobility of heavy metals (and some other geochemical characteristic) was studied for saline sediments of the Sečovlje Salina. Experiments takes place in tanks under defined conditions i.e. at day (21 °C): night (16 °C) cycle for three months. Sediment was covered with water of different salinities (36, 155, 323 g NaCl L-1 and distillate water) and mixed/stirred every week during the experimental period. At the same time, the evaporated water was replaced with distilled water. The mud samples were analyzed, at the beginning and at the end of experiment, for mineral (XRD), elemental composition (ICP-MS) and organic content (% TOC, % TN). Geochemical analysis of the aqueous phase (content of cations and anions) have also been carried out in an accredited Canadian laboratory Actlabs (Activation Laboratories, Canada). Salinity and maturation of sediment does not significantly affect its mineral composition. The samples taken at the end of the experiment have higher percent of water but lower organic carbon concentration. Concentrations of investigated elements are comparable to that in surface sediments from Central Adriatic Sea. In the water phase, concentrations of most elements (As, Ba, Cu, Mo, Mn, Ni, Sr, Sb) rise from the beginning to the end of the experiment, whereas the metal (potentially toxic elements) decreasing trend in mud was observed at that time. These data contribute to the knowledge of natural healing muds and that of diagenetic processes on metals in hypersaline sediments.

Geomorphic field experiment to quantify grain size and biotic influence on riverbed sedimentation dynamics in a dry-season reservoir, Russian River, CA

NASA Astrophysics Data System (ADS)

Florsheim, J. L.; Ulrich, C.; Hubbard, S. S.; Borglin, S. E.; Rosenberry, D. O.

2013-12-01

An important problem in geomorphology is to differentiate between abiotic and biotic fine sediment deposition on coarse gravel river beds because of the potential for fine sediment to infiltrate and clog the pore space between gravel clasts. Infiltration of fines into gravel substrate is significant because it may reduce permeability; therefore, differentiation of abiotic vs. biotic sediment helps in understanding the causes of such changes. We conducted a geomorphic field experiment during May to November 2012 in the Russian River near Wohler, CA, to quantify biotic influence on riverbed sedimentation in a small temporary reservoir. The reservoir is formed upstream of a small dam inflated during the dry season to enhance water supply pumping from the aquifer below the channel; however, some flow is maintained in the reservoir to facilitate fish outmigration. In the Russian River field area, sediment transport dynamics during storm flows prior to dam inflation created an alternate bar-riffle complex with a coarser gravel surface layer over the relatively finer gravel subsurface. The objective of our work was to link grain size distribution and topographic variation to biotic and abiotic sediment deposition dynamics in this field setting where the summertime dam annually increases flow depth and inundates the bar surfaces. The field experiment investigated fine sediment deposition over the coarser surface sediment on two impounded bars upstream of the reservoir during an approximately five month period when the temporary dam was inflated. The approach included high resolution field surveys of topography, grain size sampling and sediment traps on channel bars, and laboratory analyses of grain size distributions and loss on ignition (LOI) to determine biotic content. Sediment traps were installed at six sites on bars to measure sediment deposited during the period of impoundment. Preliminary results show that fine sediment deposition occurred at all of the sample sites, and is spatially variable--likely influenced by topographic differences that moderate flow over the bars. Traps initially filled with coarse gravel from the bar's surface trapped more fine sediment than traps initially filled with material from the bar's subsurface sediment, suggesting that a gravel bar's armor layer may enhance the source of material available to infiltrate into the channel substrate. LOI analysis indicates that both surface and subsurface samples have organic content ranging between 2 and 4%, following winter storm flows prior to impoundment. In contrast, samples collected after the 5-month impoundment have higher organic content ranging between 5 and 11%. This work aids in differentiating between abiotic and biotic fine sediment deposition in order to understand their relative potential for clogging gravel substrate.

The role of zeta potential in the adhesion of E. coli to suspended intertidal sediments.

PubMed

Wyness, Adam J; Paterson, David M; Defew, Emma C; Stutter, Marc I; Avery, Lisa M

2018-05-29

The extent of pathogen transport to and within aquatic systems depends heavily on whether the bacterial cells are freely suspended or in association with suspended particles. The surface charge of both bacterial cells and suspended particles affects cell-particle adhesion and subsequent transport and exposure pathways through settling and resuspension cycles. This study investigated the adhesion of Faecal Indicator Organisms (FIOs) to natural suspended intertidal sediments over the salinity gradient encountered at the transition zone from freshwater to marine environments. Phenotypic characteristics of three E. coli strains, and the zeta potential (surface charge) of the E. coli strains and 3 physically different types of intertidal sediments was measured over a salinity gradient from 0 to 5 Practical Salinity Units (PSU). A batch adhesion microcosm experiment was constructed with each combination of E. coli strain, intertidal sediment and 0, 2, 3.5 and 5 PSU. The zeta potential profile of one E. coli strain had a low negative charge and did not change in response to an increase in salinity, and the remaining E. coli strains and the sediments exhibited a more negative charge that decreased with an increase in salinity. Strain type was the most important factor in explaining cell-particle adhesion, however adhesion was also dependant on sediment type and salinity (2, 3.5 PSU > 0, 5 PSU). Contrary to traditional colloidal (Derjaguin, Landau, Vervey, and Overbeek (DLVO)) theory, zeta potential of strain or sediment did not correlate with cell-particle adhesion. E. coli strain characteristics were the defining factor in cell-particle adhesion, implying that diverse strain-specific transport and exposure pathways may exist. Further research applying these findings on a catchment scale is necessary to elucidate these pathways in order to improve accuracy of FIO fate and transport models. Copyright © 2018 Elsevier Ltd. All rights reserved.

Estimating growth rates of uncultivated clades of archaea and bacteria in marine sediments

NASA Astrophysics Data System (ADS)

Lloyd, K. G.

2016-12-01

The vast majority of microbes present in marine sediments have never been cultivated in laboratory conditions. It is therefore difficult to estimate the growth rates of these organisms in situ. Quantitative PCR (qPCR) and 16S rRNA gene libraries from sediments below 10 cm show very little change in abundance of these organisms with depth or with redox conditions. Therefore, we hypothesized that uncultivated clades of bacteria and archaea that are ubiquitous in marine sediments, actually grow in the upper 10 cm of marine sediments. We collected sediment cores from the White Oak River estuary, sectioned them in 1 cm intervals, and examined the changes in abundance of uncultivated microbes with depth using 16S rRNA gene libraries and qPCR. We found that some of the key clades associated with the deep subsurface microbiome, such as Bathyarchaeota and MBG-D, increase in abundance with depth, demonstrating extremely slow growth in these shallow subsurface sediments.

Saline systems of the Great Plains of western Canada: an overview of the limnogeology and paleolimnology

PubMed Central

Last, William M; Ginn, Fawn M

2005-01-01

In much of the northern Great Plains, saline and hypersaline lacustrine brines are the only surface waters present. As a group, the lakes of this region are unique: there is no other area in the world that can match the concentration and diversity of saline lake environments exhibited in the prairie region of Canada and northern United States. The immense number of individual salt lakes and saline wetlands in this region of North America is staggering. Estimates vary from about one million to greater than 10 million, with densities in some areas being as high as 120 lakes/km2. Despite over a century of scientific investigation of these salt lakes, we have only in the last twenty years advanced far enough to appreciate the wide spectrum of lake types, water chemistries, and limnological processes that are operating in the modern settings. Hydrochemical data are available for about 800 of the lake brines in the region. Composition, textural, and geochemical information on the modern bottom sediments has been collected for just over 150 of these lakes. Characterization of the biological and ecological features of these lakes is based on even fewer investigations, and the stratigraphic records of only twenty basins have been examined. The lake waters show a considerable range in ionic composition and concentration. Early investigators, concentrating on the most saline brines, emphasized a strong predominance of Na+ and SO4-2 in the lakes. It is now realized, however, that not only is there a complete spectrum of salinities from less than 1 ppt TDS to nearly 400 ppt, but also virtually every water chemistry type is represented in lakes of the region. With such a vast array of compositions, it is difficult to generalize. Nonetheless, the paucity of Cl-rich lakes makes the northern Great Plains basins somewhat unusual compared with salt lakes in many other areas of the world (e.g., Australia, western United States). Compilations of the lake water chemistries show distinct spatial trends and regional variations controlled by groundwater input, climate, and geomorphology. Short-term temporal variations in the brine composition, which can have significant effects on the composition of the modern sediments, have also been well documented in several individual basins. From a sedimentological and mineralogical perspective, the wide range of water chemistries exhibited by the lakes leads to an unusually large diversity of modern sediment composition. Over 40 species of endogenic precipitates and authigenic minerals have been identified in the lacustrine sediments. The most common non-detrital components of the modern sediments include: calcium and calcium-magnesium carbonates (magnesian calcite, aragonite, dolomite), and sodium, magnesium, and sodium-magnesium sulfates (mirabilite, thenardite, bloedite, epsomite). Many of the basins whose brines have very high Mg/Ca ratios also have hydromagnesite, magnesite, and nesquehonite. Unlike salt lakes in many other areas of the world, halite, gypsum, and calcite are relatively rare endogenic precipitates in the Great Plains lakes. The detrital fraction of the lacustrine sediments is normally dominated by clay minerals, carbonate minerals, quartz, and feldspars. Sediment accumulation in these salt lakes is controlled and modified by a wide variety of physical, chemical, and biological processes. Although the details of these modern sedimentary processes can be exceedingly complex and difficult to discuss in isolation, in broad terms, the processes operating in the salt lakes of the Great Plains are ultimately controlled by three basic factors or conditions of the basin: (a) basin morphology; (b) basin hydrology; and (c) water salinity and composition. Combinations of these parameters interact to control nearly all aspects of modern sedimentation in these salt lakes and give rise to four 'end member' types of modern saline lacustrine settings in the Great Plains: (a) clastics-dominated playas; (b) salt-dominated playas; (c) deep water, non-stratified lakes; and (d) deep water, "permanently" stratified lakes. PMID:16297237

Comparative Study of Effects of CO 2 Concentration and pH on Microbial Communities from a Saline Aquifer, a Depleted Oil Reservoir, and a Freshwater Aquifer

DOE PAGES

Gulliver, Djuna M.; Lowry, Gregory V.; Gregory, Kelvin B.

2016-08-09

Injected CO 2 from geologic carbon storage is expected to impact the microbial communities of proposed storage sites, such as depleted oil reservoirs and deep saline aquifers, as well as overlying freshwater aquifers at risk of receiving leaking CO 2. Microbial community change in these subsurface sites may affect injectivity of CO 2, permanence of stored CO 2, and shallow subsurface water quality. The effect of CO 2 concentration on the microbial communities in fluid collected from a depleted oil reservoir and a freshwater aquifer was examined at subsurface pressures and temperatures. The community was exposed to 0%, 1%, 10%,more » and 100% pCO 2 for 56 days. Bacterial community structure was analyzed through 16S rRNA gene clone libraries, and total bacterial abundance was estimated through quantitative polymerase chain reaction. Changes in the microbial community observed in the depleted oil reservoir samples and freshwater samples were compared to previous results from CO 2-exposed deep saline aquifer fluids. Overall, results suggest that CO 2 exposure to microbial communities will result in pH-dependent population change, and the CO 2-selected microbial communities will vary among sites. In conclusion, this is the first study to compare the response of multiple subsurface microbial communities at conditions expected during geologic carbon storage, increasing the understanding of environmental drivers for microbial community changes in CO 2-exposed environments.« less

Comparative Study of Effects of CO 2 Concentration and pH on Microbial Communities from a Saline Aquifer, a Depleted Oil Reservoir, and a Freshwater Aquifer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna M.; Lowry, Gregory V.; Gregory, Kelvin B.

Injected CO 2 from geologic carbon storage is expected to impact the microbial communities of proposed storage sites, such as depleted oil reservoirs and deep saline aquifers, as well as overlying freshwater aquifers at risk of receiving leaking CO 2. Microbial community change in these subsurface sites may affect injectivity of CO 2, permanence of stored CO 2, and shallow subsurface water quality. The effect of CO 2 concentration on the microbial communities in fluid collected from a depleted oil reservoir and a freshwater aquifer was examined at subsurface pressures and temperatures. The community was exposed to 0%, 1%, 10%,more » and 100% pCO 2 for 56 days. Bacterial community structure was analyzed through 16S rRNA gene clone libraries, and total bacterial abundance was estimated through quantitative polymerase chain reaction. Changes in the microbial community observed in the depleted oil reservoir samples and freshwater samples were compared to previous results from CO 2-exposed deep saline aquifer fluids. Overall, results suggest that CO 2 exposure to microbial communities will result in pH-dependent population change, and the CO 2-selected microbial communities will vary among sites. In conclusion, this is the first study to compare the response of multiple subsurface microbial communities at conditions expected during geologic carbon storage, increasing the understanding of environmental drivers for microbial community changes in CO 2-exposed environments.« less

Path analyses of the influence of substrate composition on nematode numbers and on decomposition of stranded seaweed at an Antarctic coast

NASA Astrophysics Data System (ADS)

Alkemade, R.; Van Rijswijk, P.

Large amounts of seaweed are deposited along the coast of Admiralty Bay, King George Island, Antarctica. The stranded seaweed partly decomposes on the beach and supports populations of meiofauna species, mostly nematodes. The factors determining the number of nematodes found in the seaweed packages were studied. Seaweed/sediment samples were collected from different locations, along the coast near Arctowski station, covering gradients of salinity, elevation and proximity of Penguin rookeries. On the same locations decomposition rate was determined by means of permeable containers with seaweed material. Models, including the relations between location, seaweed and sediment characteristics, number of nematodes and decomposition rates, were postulated and verified using path analysis. The most plausible and significant models are presented. The number of nematodes was directly correlated with the height of the location, the carbon-to-nitrogen ratio, and the salinity of the sample. Nematode numbers were apparently indirectly dependent on sediment composition and water content. We hypothesize that the different influences of melt water and tidal water, which affect both salinity and water content of the deposits, are important phenomena underlying these results. Analysis of the relation between decomposition rate and abiotic, location-related characteristics showed that decomposition rate was dependent on the water content of the stranded seaweed and sediment composition. Decomposition rates were high on locations where water content of the deposits was high. There the running water from melt water run-off or from the surf probably increased weight losses of seaweed.

Distribution of macroalgae and sediment chlorophyll A along salinity and elevation gradients in Oregon tidal marshes

EPA Science Inventory

Algae contribute to trophic and biogeochemical processes in tidal wetlands. We investigated patterns of sediment pigment content and macroalgal abundance and diversity in marshes in four Oregon estuaries representing a variety of vegetation types, salinity regimes, and tidal ele...

ANME-2D Archaea Catalyze Methane Oxidation in Deep Subsurface Sediments Independent of Nitrate Reduction

NASA Astrophysics Data System (ADS)

Hernsdorf, A. W.; Amano, Y.; Suzuki, Y.; Ise, K.; Thomas, B. C.; Banfield, J. F.

2015-12-01

Terrestrial sediments are an important global reservoir for methane. Microorganisms in the deep subsurface play a critical role in the methane cycle, yet much remains to be learned about their diversity and metabolisms. To provide more comprehensive insight into the microbiology of the methane cycle in the deep subsurface, we conducted a genome-resolved study of samples collected from the Horonobe Underground Research Laboratory (HURL), Japan. Groundwater samples were obtained from three boreholes from a depth range of between 140 m and 250 m in two consecutive years. Groundwater was filtered and metagenomic DNA extracted and sequenced, and the sequence data assembled. Based on the sequences of phylogenetically informative genes on the assembled fragments, we detected a high degree of overlap in community composition across a vertical transect within one borehole at the two sampling times. However, there was comparatively little similarity observed among communities across boreholes. Spatial and temporal abundance patterns were used in combination with tetranucleotide signatures of assembled genome fragments to bin the data and reconstruct over 200 unique draft genomes, of which 137 are considered to be of high quality (>90% complete). The deepest samples from one borehole were highly dominated by an archaeon identified as ANME-2D; this organism was also present at lower abundance in all other samples from that borehole. Also abundant in these microbial communities were novel members of the Gammaproteobacteria, Saccharibacteria (TM7) and Tenericute phyla. Notably, a ~2 Mbp draft genome for the ANME-2D archaeon was reconstructed. As expected, the genome encodes all of the genes predicted to be involved in the reverse methanogenesis pathway. In contrast with the previously reported ANME2-D genome, the HURL ANME-2D genome lacks the capacity to reduce nitrate. However, we identified many multiheme cytochromes with closest similarity to those of the known Fe-reducing/oxidizing archaeon Ferroglobus placidus. Thus, we suggest that ANME2-D may couple methane oxidation to reduction of ferric iron minerals in the sediment and may be generally important as a link between the iron and methane cycles in deep subsurface environments. Such information has important implications for modeling the global carbon cycle.

HYDRODYNAMIC AND TRANSPORT MODELING STUDY IN A HIGHLY STRATIFIED ESTUARY

EPA Science Inventory

This paper presents the preliminary results of hydrodynamic and salinity predictions and the implications to an ongoing contaminated sediment transport and fate modeling effort in the Lower Duwamish Waterway (LDW), Seattle, Washington. The LDW is highly strati-fied when freshwate...

Impact of hydrogeological factors on groundwater salinization due to ocean-surge inundation

NASA Astrophysics Data System (ADS)

Yang, Jie; Zhang, Huichen; Yu, Xuan; Graf, Thomas; Michael, Holly A.

2018-01-01

Ocean surges cause seawater inundation of coastal inland areas. Subsequently, seawater infiltrates into coastal aquifers and threatens the fresh groundwater resource. The severity of resulting salinization can be affected by hydrogeological factors including aquifer properties and hydrologic conditions, however, little research has been done to assess these effects. To understand the impacts of hydrogeological factors on groundwater salinization, we numerically simulated an ocean-surge inundation event on a two-dimensional conceptual coastal aquifer using a coupled surface-subsurface approach. We varied model permeability (including anisotropy), inland hydraulic gradient, and recharge rate. Three salinization-assessment indicators were developed, based on flushing time, depth of salt penetration, and a combination of the two, weighted flushing time, with which the impact of hydrogeological factors on groundwater vulnerability to salinization were quantitatively assessed. The vulnerability of coastal aquifers increases with increasing isotropic permeability. Low horizontal permeability (kx) and high vertical permeability (kz) lead to high aquifer vulnerability, and high kx and low kz lead to low aquifer vulnerability. Vulnerability decreases with increasing groundwater hydraulic gradient and increasing recharge rate. Additionally, coastal aquifers with a low recharge rate (R ≤ 300 mm yr-1) may be highly vulnerable to ocean-surge inundation. This study shows how the newly introduced indicators can be used to quantitatively assess coastal aquifer vulnerability. The results are important for global vulnerability assessment of coastal aquifers to ocean-surge inundation.

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

PubMed

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K; Beyenal, Haluk

2012-11-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

PubMed Central

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S.; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K.

2012-01-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N′-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments. PMID:22961903

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, B.; McLean, Jeffrey S.

2012-11-07

A facultative iron-reducing (Fe(III)-reducing) Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes (Fe(III)-NTA and Fe(III)-citrate) but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 µM) of either of electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 µM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We found that Paenibacillus sp. 300A alsomore » could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ~7:3 in PIPES and ~1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.« less

Subsurface dolomite formation during post-depositional flow of sulphate-bearing fluids from underlying salt giants: Early Pliocene example at DSDP Leg 42A, Site 374, Ionian Abyssal Plain

NASA Astrophysics Data System (ADS)

McKenzie, Judith A.; Evans, Nick; Hodell, David; Aloisi, Giovanni; Vasconcelos, Crisogono

2017-04-01

Deciphering exact mechanisms for the formation of massive dolomite deposits has long been an enigma in sedimentary geology. The recognition that microbes can play a role in the dolomite precipitation process has added a new dimension to the study of the origin of dolomite formations in both shallow and deep-water environments. This scientific advance has evolved, particularly, through the investigation of dolomite-containing, organic-rich hemipelagic sediments cored on various continental margins during DSDP and ODP drilling campaigns, as well as intensive evaluations of modern hypersaline dolomite-precipitating environments with complementary culture experiments conducted in the laboratory. For example, the association of an active subsurface microbial community in contact with underlying brines of unknown origin leading to in situ dolomite precipitation has been observed in a Quaternary sequence of hemi-pelagic, organic carbon-rich sediments drilled on the Peru Margin, ODP Leg 201, Site 1229 (1). Specifically, it can be concluded that the long-term activity of subsurface microbes can be maintained by post-depositional flow of sulfate-bearing fluids from underlying large-scale evaporite deposits, or salt giants, promoting in situ dolomite precipitation. Another example of dolomite precipitation directly associated with the underlying Messinian salt giant was found at DSDP Leg 42A, Site 374 in the Ionian Abyssal Plain. Deep-sea drilling recovered a lowermost Pliocene sequence of diagenetically altered sediment (Unit II) separating the overlying Pliocene open-marine deposits (Unit I) and the underlying end Messinian dolomitic mudstone with gypsum layers (Unit III). The lower portion of this altered interval contained in Core 11, Section 2 (378.0 - 381.5 mbsf) comprises a dolomicrite with an unusual crystal morphology (2). The original interstitial water geochemical profiles indicate that a saline brine is diffusing upwards from below and into the dolomicrite sequence. There appears to be on-going bacterial sulfate reduction in this boundary zone between the evaporitic and normal pelagic sediments with a significant decrease in sulfate concentrations, whereas the chloride profile remains constant. It was concluded that the earliest Pliocene marine sediments of Unit II had been dolomitized after burial as a consequence of ionic migration across a steep Mg-concentration gradient (3). However, with the addition of a microbial factor into the study of the dolomite precipitation process, an alternate interpretation is possible. We propose that, at the location of DSDP Leg 42A, Site 374, modern subsurface dolomite precipitation is ongoing and the site is a "natural laboratory" in which to investigate the microbial phenomenon in the context of a giant evaporite deposit. This actualistic example may provide a new model for the origin of massive dolomite deposits associated with other salt giants in the rock record. (1) Meister, P., et al., 2007. Sedimentology, 54, 1007-1031. (2) Bernoulli, D. & Mélières, F., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 621-633. (3) McDuff, R.E., et al., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 561-568.

Climatic Controls on the Porewater Chemistry of Mid-Continental Wetlands

NASA Astrophysics Data System (ADS)

Levy, Zeno Francis

Wetlands develop where climate and physiography conspire to maintain saturated soils at the land surface, support diverse plant and animal communities, and serve as globally important sinks for atmospheric carbon. The chemistry of wetland porewaters impacts near-surface biological communities and subsurface biogeochemical processes that influence carbon cycling in the environment. Wetland porewater chemistry is a dynamic byproduct of complex hydrogeological processes that cause meteoric waters to enter groundwater systems (recharge) or groundwater to flow to the land surface (discharge). Changes in climate can alter subsurface hydraulic gradients that determine the recharge and discharge functions of wetlands, which in turn control the hydrogeochemical evolution of wetland porewaters. The climate of mid-continental North America is influenced by competing air masses with vastly different temperature and moisture contents originating from the Pacific Coast, the Gulf of Mexico, and the Arctic. The interactions of these air masses result in large dynamic shifts of climate regimes characterized by decadal-scale oscillations between periods of drought and heavy rain. Over the course of the 20th century, a shift occurred towards wetter climate in the mid-continental region. This dissertation examines the impact of this climate shift on the porewater chemistry of two very different wetland systems, located only 350 km apart: the Glacial Lake Agassiz Peatlands (GLAP) of northern Minnesota and the Cottonwood Lake Study Area (CLSA) of North Dakota. The former study site consists of a large (7,600 km2), circumboreal peatland that developed an extensive blanket of peat over the last 5000 years on a relatively flat glacial lake bed within a sub-humid to semi-arid climate gradient characterized by small annual atmospheric moisture surpluses and frequent droughts. The latter study site consists of a 0.92 km2 complex of small (meter-scale) "prairie pothole" wetlands located on a hummocky glacial stagnation moraine under semi-arid climate where wetlands frequently fill and dry with surface ponds over low-permeability glacial till in response to snowmelt runoff and evapotranspiration. Both sites have been the subject of long-term hydrological study since c. 1980 and are well-established examples of the sensitivity of wetland functions to changes in climate. The first chapter of this dissertation utilizes a semi-conservative tracer suite (pH, Ca, Mg, Sr, 87Sr/86Sr) to fingerprint discharge of calcareous groundwater to GLAP peat along a 6 km transect from a bog crest downslope to an internal fen water track and bog islands. However, stable isotopes of the peat porewaters (delta18O and delta 2H) show that the subsurface throughout the entire study area is currently flushed with recharge from the near surface peat. I hypothesize that back-diffusion of groundwater-derived solutes from the peat matrix to active pore-spaces has allowed the geochemical signal from paleo-hydrogeologic discharge to persist into the current regime of dilute recharge. This effect promotes methane generation in the peatland subsurface by allowing transport of labile carbon compounds from the land surface to depth while maintaining geochemical conditions (i.e. pH) in the deep peat favorable to biogenic methane production. The results of this study show that autogenic hydrogeochemical feedback mechanisms contribute to the resilience of peatlands systems and associated ecological functions against climate change. The second chapter of this dissertation consists of a detailed geoelectrical survey of a well-studied, closed-basin prairie wetland (P1) in the CLSA that has experienced record drought and heavy rains (i.e. deluge) during the late 20th century. Subsurface storage of sulfate (SO4) salts allows many such closed-basin prairie wetlands to maintain moderate surface water salinities (TDS from 1 to 10 g L-1) that influence communities of aquatic biota. I imaged saline lenses of sulfate-rich porewater (TDS > 10 g L-1) in wetland sediments beneath the bathymetric low of the wetland and within the currently ponded area along the shoreline of a prior pond stand. Analyses of long-term (1979-2014) groundwater and surface water levels in the wetland suggest that the saline lenses formed during paleo-droughts when the groundwater levels dropped below the wetland bed and are stable in the subsurface on at least centennial timescales. I hypothesize a "drought-induced recharge" mechanism by which wetlands maintain moderate surface water salinity by subsurface storage during droughts when the wetlands dry and intermittent runoff events flush surface salts down secondary porosity created by desiccation fractures and terrestrial plant roots. Drought-derived saline groundwater has the potential to increase wetland salinity during record wet climate conditions currently prevalent in the Prairie Pothole Region. The third chapter of this dissertation extends the findings of the second chapter by a detailed geochemical survey of wetland porewater, pond water, and upland groundwater in the P1 basin. (Abstract shortened by ProQuest.).

Use of sediment source fingerprinting to assess the role of subsurface erosion in the supply of fine sediment in a degraded catchment in the Eastern Cape, South Africa.

PubMed

Manjoro, Munyaradzi; Rowntree, Kate; Kakembo, Vincent; Foster, Ian; Collins, Adrian L

2017-06-01

Sediment source fingerprinting has been successfully deployed to provide information on the surface and subsurface sources of sediment in many catchments around the world. However, there is still scope to re-examine some of the major assumptions of the technique with reference to the number of fingerprint properties used in the model, the number of model iterations and the potential uncertainties of using more than one sediment core collected from the same floodplain sink. We investigated the role of subsurface erosion in the supply of fine sediment to two sediment cores collected from a floodplain in a small degraded catchment in the Eastern Cape, South Africa. The results showed that increasing the number of individual fingerprint properties in the composite signature did not improve the model goodness-of-fit. This is still a much debated issue in sediment source fingerprinting. To test the goodness-of-fit further, the number of model repeat iterations was increased from 5000 to 30,000. However, this did not reduce uncertainty ranges in modelled source proportions nor improve the model goodness-of-fit. The estimated sediment source contributions were not consistent with the available published data on erosion processes in the study catchment. The temporal pattern of sediment source contributions predicted for the two sediment cores was very different despite the cores being collected in close proximity from the same floodplain. This highlights some of the potential limitations associated with using floodplain cores to reconstruct catchment erosion processes and associated sediment source contributions. For the source tracing approach in general, the findings here suggest the need for further investigations into uncertainties related to the number of fingerprint properties included in un-mixing models. The findings support the current widespread use of ≤5000 model repeat iterations for estimating the key sources of sediment samples. Copyright © 2016 Elsevier Ltd. All rights reserved.

Remote sensing of subsurface water temperature by Raman scattering.

PubMed

Leonard, D A; Caputo, B; Hoge, F E

1979-06-01

The application of Raman scattering to remote sensing of subsurface water temperature and salinity is considered, and both theoretical and experimental aspects of the technique are discussed. Recent experimental field measurements obtained in coastal waters and on a trans-Atlantic/Mediterranean research cruise are correlated with theoretical expectations. It is concluded that the Raman technique for remote sensing of subsurface water temperature has been brought from theoretical and laboratory stages to the point where practical utilization can now be developed.

Hurricane-induced failure of low salinity wetlands

PubMed Central

Howes, Nick C.; FitzGerald, Duncan M.; Hughes, Zoe J.; Georgiou, Ioannis Y.; Kulp, Mark A.; Miner, Michael D.; Smith, Jane M.; Barras, John A.

2010-01-01

During the 2005 hurricane season, the storm surge and wave field associated with Hurricanes Katrina and Rita eroded 527 km2 of wetlands within the Louisiana coastal plain. Low salinity wetlands were preferentially eroded, while higher salinity wetlands remained robust and largely unchanged. Here we highlight geotechnical differences between the soil profiles of high and low salinity regimes, which are controlled by vegetation and result in differential erosion. In low salinity wetlands, a weak zone (shear strength 500–1450 Pa) was observed ∼30 cm below the marsh surface, coinciding with the base of rooting. High salinity wetlands had no such zone (shear strengths > 4500 Pa) and contained deeper rooting. Storm waves during Hurricane Katrina produced shear stresses between 425–3600 Pa, sufficient to cause widespread erosion of the low salinity wetlands. Vegetation in low salinity marshes is subject to shallower rooting and is susceptible to erosion during large magnitude storms; these conditions may be exacerbated by low inorganic sediment content and high nutrient inputs. The dramatic difference in resiliency of fresh versus more saline marshes suggests that the introduction of freshwater to marshes as part of restoration efforts may therefore weaken existing wetlands rendering them vulnerable to hurricanes. PMID:20660777

The impact of catchment source group classification on the accuracy of sediment fingerprinting outputs.

PubMed

Pulley, Simon; Foster, Ian; Collins, Adrian L

2017-06-01

The objective classification of sediment source groups is at present an under-investigated aspect of source tracing studies, which has the potential to statistically improve discrimination between sediment sources and reduce uncertainty. This paper investigates this potential using three different source group classification schemes. The first classification scheme was simple surface and subsurface groupings (Scheme 1). The tracer signatures were then used in a two-step cluster analysis to identify the sediment source groupings naturally defined by the tracer signatures (Scheme 2). The cluster source groups were then modified by splitting each one into a surface and subsurface component to suit catchment management goals (Scheme 3). The schemes were tested using artificial mixtures of sediment source samples. Controlled corruptions were made to some of the mixtures to mimic the potential causes of tracer non-conservatism present when using tracers in natural fluvial environments. It was determined how accurately the known proportions of sediment sources in the mixtures were identified after unmixing modelling using the three classification schemes. The cluster analysis derived source groups (2) significantly increased tracer variability ratios (inter-/intra-source group variability) (up to 2122%, median 194%) compared to the surface and subsurface groupings (1). As a result, the composition of the artificial mixtures was identified an average of 9.8% more accurately on the 0-100% contribution scale. It was found that the cluster groups could be reclassified into a surface and subsurface component (3) with no significant increase in composite uncertainty (a 0.1% increase over Scheme 2). The far smaller effects of simulated tracer non-conservatism for the cluster analysis based schemes (2 and 3) was primarily attributed to the increased inter-group variability producing a far larger sediment source signal that the non-conservatism noise (1). Modified cluster analysis based classification methods have the potential to reduce composite uncertainty significantly in future source tracing studies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Last Glacial Maximum Salinity Reconstruction

NASA Astrophysics Data System (ADS)

Homola, K.; Spivack, A. J.

2016-12-01

It has been previously demonstrated that salinity can be reconstructed from sediment porewater. The goal of our study is to reconstruct high precision salinity during the Last Glacial Maximum (LGM). Salinity is usually determined at high precision via conductivity, which requires a larger volume of water than can be extracted from a sediment core, or via chloride titration, which yields lower than ideal precision. It has been demonstrated for water column samples that high precision density measurements can be used to determine salinity at the precision of a conductivity measurement using the equation of state of seawater. However, water column seawater has a relatively constant composition, in contrast to porewater, where variations from standard seawater composition occur. These deviations, which affect the equation of state, must be corrected for through precise measurements of each ion's concentration and knowledge of apparent partial molar density in seawater. We have developed a density-based method for determining porewater salinity that requires only 5 mL of sample, achieving density precisions of 10-6 g/mL. We have applied this method to porewater samples extracted from long cores collected along a N-S transect across the western North Atlantic (R/V Knorr cruise KN223). Density was determined to a precision of 2.3x10-6 g/mL, which translates to salinity uncertainty of 0.002 gms/kg if the effect of differences in composition is well constrained. Concentrations of anions (Cl-, and SO4-2) and cations (Na+, Mg+, Ca+2, and K+) were measured. To correct salinities at the precision required to unravel LGM Meridional Overturning Circulation, our ion precisions must be better than 0.1% for SO4-/Cl- and Mg+/Na+, and 0.4% for Ca+/Na+, and K+/Na+. Alkalinity, pH and Dissolved Inorganic Carbon of the porewater were determined to precisions better than 4% when ratioed to Cl-, and used to calculate HCO3-, and CO3-2. Apparent partial molar densities in seawater were determined experimentally. We compare the high precision salinity profiles determined using our new method to profiles determined from the traditional chloride titrations of parallel samples. Our technique provides a more accurate reconstruction of past salinity, informing questions of water mass composition and distribution during the LGM.

Sediment storage quantification and postglacial evolution of an inner-alpine sedimentary basin (Gradenmoos, Schober Mountains, Austria)

NASA Astrophysics Data System (ADS)

Götz, J.; Buckel, J.; Otto, J. C.; Schrott, L.

2012-04-01

Knickpoints in longitudinal valley profiles of alpine headwater catchments can be frequently assigned to the lithological and tectonical setting, to damming effects through large (rockfall) deposits, or to the impact of Pleistocene glaciations causing overdeepened basins. As a consequence various sedimentary sinks developed, which frequently interrupt sediment flux in alpine drainage basins. Today these locations may represent landscape archives documenting a sedimentary history of great value for the understanding of alpine landscape evolution. The glacially overdeepened Gradenmoos basin at 1920 m a.s.l. (an alpine lake mire with adjacent floodplain deposits and surrounding slope storage landforms; approx. 4.1 km2) is the most pronounced sink in the studied Gradenbach catchment (32.5 km2). The basin is completely filled up with sediments delivered by mainly fluvial processes, debris flows, and rock falls, it is assumed to be deglaciated since Egesen times and it is expected to archive a continuous stratigraphy of postglacial sedimentation. As the analysis of denudation-accumulation-systems is generally based on back-calculation of stored sediment volumes to a specific sediment delivering area, most reliable results will be consequently obtained (1) if sediment output of the system can be neglected for the investigated period of time, (2) if - due to spatial scale - sediment storage can be assessed quantitatively with a high level of accuracy, and (3) if the sediment contributing area can be clearly delimited. All three aspects are considered to be fulfilled to a high degree within the Gradenmoos basin. Sediment storage is quantified using geophysical methods, core drillings and GIS modelling whereas postglacial reconstruction is based on radiocarbon dating and palynological analyses. Subject to variable subsurface conditions, different geophysical methods were applied to detect bedrock depth. Electrical resistivity surveying (2D/3D) was used most extensively as it delivered detailed and realistic subsurface models with low residual errors in the fine grained and water saturated central and distal part of the basin. With a lower data density, ground penetrating radar and refraction seismic supplied bedrock depths underneath adjacent debris and talus slope deposits. Additionally extracted sediment cores (up to 22 m depth) yielded a detailed stratigraphic record of the basin comprising a basal till layer underneath lake sediments (sandy-silty, partly varved), a sandy matrix with several oxidised layers in the upper sections, and layers of peat towards the surface. As bedrock was reached several times, core drilling further enabled to calibrate resistivity models. On the base of geophysical derived bedrock points, the shape of the assumed bedrock basin was modelled using a thin-plate-spline interpolation. Sediment volumes were calculated by subtracting the bedrock model from a surface DEM derived from terrestrial laser scanning. Since sediment delivering areas can be clearly assigned to single storage landform volumes, denudation rates could be calculated in detail and related to sedimentation rates obtained by radiocarbon dating results. An integrated analysis of surface, subsurface and temporal information finally yielded a model of postglacial basin evolution which will be discussed in a paraglacial context. This presentation is supported by the EUROCORES programme TOPO-EUROPE of the European Science Foundation.

Microbial monitoring during CO2 storage in deep subsurface saline aquifers in Ketzin, Germany

NASA Astrophysics Data System (ADS)

Wuerdemann, H.; Wandrey, M.; Fischer, S.; Zemke, K.; Let, D.; Zettlitzer, M.; Morozova, D.

2010-12-01

Investigations on subsurface saline aquifers have shown an active biosphere composed of diverse groups of microorganisms in the subsurface. Since microorganisms represent very effective geochemical catalysts, they may influence the process of CO2 storage significantly. In the frames of the EU Project CO2SINK a field laboratory to study CO2 storage into saline aquifer was operated. Our studies aim at monitoring of biological and biogeochemical processes and their impact on the technical effectiveness of CO2 storage technique. The interactions between microorganisms and the minerals of both the reservoir and the cap rock may cause changes to the structure and chemical composition of the rock formations, which may influence the reservoir permeability locally. In addition, precipitation and corrosion may be induced around the well affecting the casing and the casing cement. Therefore, analyses of the composition of microbial communities and its changes should contribute to an evaluation of the effectiveness and reliability of the long-term CO2 storage technique. In order to investigate processes in the deep biosphere caused by the injection of supercritical CO2, genetic fingerprinting (PCR SSCP Single-Strand-Conformation Polymorphism) and FISH (Fluorescence in situ Hybridisation) were used for identification and quantification of microorganisms. Although saline aquifers could be characterised as an extreme habitat for microorganisms due to reduced conditions, high pressure and salinity, a high number of diverse groups of microorganisms were detected with downhole sampling in the injection and observation wells at a depth of about 650m depth. Of great importance was the identification of the sulphate reducing bacteria, which are known to be involved in corrosion processes. Microbial monitoring during CO2 injection has shown that both quantity and diversity of microbial communities were strongly influenced by the CO2 injection. In addition, the indigenous microbial communities revealed a high adaptability to the changed environments after CO2 injection. In order to investigate processes in the rock substrate, long term CO2 exposure experiments on freshly drilled, pristine Ketzin reservoir core samples were accomplished for 24 months using sterile synthetic brine under in situ pressure and temperature conditions. The composition of the microbial community dominated by chemoorganotrophic bacteria and hydrogen oxidizing bacteria changed slightly under CO2 exposure. In addition, changes in porosities were observed with time. During the experiments porosity first increased due to mineral dissolution but then tend to decrease due to mineral precipitation. These mineralogical changes are consistent with changes in fluid composition during the course of the experiments that indicate notably increased K+, Ca2+, Mg2+, and SO4 2- concentrations. K+, Ca2+, Mg2+ concentrations exceeded the reservoir brine composition significantly and can be attributed to the CO2 exposure.

Mercury distribution in ancient and modern sediment of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C.H.; Pierce, D.E.; Leong, K.W.; Wang, F.F.H.

1975-01-01

Reconnaissance sampling of surface and subsurface sediment to a maximum depth of 80 m below the sea floor shows that typical values of 0.03 p.p.m. and anomalies of 0.2-1.3 p.p.m. mercury have been present in northeastern Bering Sea since Early Pliocene time. Values are highest in modern beach (maximum 1.3 and mean 0.22 p.p.m. Hg) and nearshore subsurface gravels (maximum 0.6 and mean 0.06 p.p.m. Hg) along the highly mineralized Seward Peninsula and in clayey silt rich in organic matter (maximum 0.16 and mean 0.10 p.p.m. Hg) throughout the region. Although gold mining may be partly responsible for high mercury levels in the modern beach near Nome, Alaska (maximum 0.45 p.p.m.), equally high or greater concentrations of mercury occur in buried Pleistocene sediments immediately offshore (maximum 0.6 p.p.m.) and in modern unpolluted beach sediments at Bluff (maximum 1.3 p.p.m.); this suggests that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The mercury content of offshore surface sediment, even adjacent to mercury-rich beaches, corresponds to that of unpolluted marine and fresh-water sediment elsewhere. The normal values that prevail offshore may be attributable to entrapment of mercury-bearing heavy minerals on beaches near sources and/or dilution effects of offshore sedimentation. The few minor anomalies offshore occur in glacial drift derived from mercury source regions of Chukotka (Siberia) and Seward Peninsula; Pleistocene shoreline processes have reworked the drift to concentrate the heavy metals. The distribution pattern of mercury indicates that particulate mercury-bearing minerals have not been widely dispersed from onland deposits in quantities sufficient to increase mercury levels above normal in offshore sediments of Bering Sea; however, it shows that natural sedimentary processes can concentrate this mercury in beaches of the coastal zone where there already is concern because of potential pollution from man's activities.

Spatial Trends and Variability of Vertical Accretion Rates in the Barataria Basin, Louisiana, U.S.A. using Pb-210 and Cs-137 radiochemistry

NASA Astrophysics Data System (ADS)

Shrull, S.; Wilson, C.; Snedden, G.; Bentley, S. J.

2017-12-01

Barataria Basin on the south Louisiana coast is experiencing some of the greatest amounts of coastal land loss in the United States with rates as high as 23.1 km2 lost per year. In an attempt to help slow or reverse land loss, millions of dollars are being spent to create sediment diversions to increase the amount of available inorganic sediments to these vulnerable coastal marsh areas. A better understanding of the spatial trends and patterns of background accretion rates needs to be established in order to effectively implement such structures. Core samples from 25 Coastwide Reference Monitoring System (CRMS) sites spanning inland freshwater to coastal saline areas within the basin were extracted, and using vertical accretion rates from Cs-137 & Pb-210 radionuclide detection, mineral versus organic sediment composition, grain size distribution, and spatial trends of bulk densities, the controls on the accretion rates of the marsh soils will be constrained. Initial rates show a range from 0.31 cm/year to 1.02 cm/year with the average being 0.79 cm/year. Preliminary results suggest that location and proximity to an inorganic sediment source (i.e. river/tributary or open water) have a stronger influence on vertical accretion rates than marsh classification and salinity, with no clear relationship between vertical accretion and salinity. Down-core sediment composition and bulk density analyses observed at a number of the sites likely suggest episodic sedimentation and show different vertical accretion rates through time. Frequency and length of inundation (i.e. hydroperiod), and land/marsh classification from the CRMS data set will be further investigated to constrain the spatial variability in vertical accretion for the basin.

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, Jim K.; Balkwill, David L.; Romine, Margaret F.

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteriamore » cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.« less

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

PubMed

Fredrickson, J K; Balkwill, D L; Romine, M F; Shi, T

1999-10-01

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

PubMed Central

Durbin, Alan M.; Teske, Andreas

2012-01-01

Examining the patterns of archaeal diversity in little-explored organic-lean marine subsurface sediments presents an opportunity to study the association of phylogenetic affiliation and habitat preference in uncultured marine Archaea. Here we have compiled and re-analyzed published archaeal 16S rRNA clone library datasets across a spectrum of sediment trophic states characterized by a wide range of terminal electron-accepting processes. Our results show that organic-lean marine sediments in deep marine basins and oligotrophic open ocean locations are inhabited by distinct lineages of archaea that are not found in the more frequently studied, organic-rich continental margin sediments. We hypothesize that different combinations of electron donor and acceptor concentrations along the organic-rich/organic-lean spectrum result in distinct archaeal communities, and propose an integrated classification of habitat characteristics and archaeal community structure. PMID:22666218

Significant contribution of Archaea to extant biomass in marine subsurface sediments.

PubMed

Lipp, Julius S; Morono, Yuki; Inagaki, Fumio; Hinrichs, Kai-Uwe

2008-08-21

Deep drilling into the marine sea floor has uncovered a vast sedimentary ecosystem of microbial cells. Extrapolation of direct counts of stained microbial cells to the total volume of habitable marine subsurface sediments suggests that between 56 Pg (ref. 1) and 303 Pg (ref. 3) of cellular carbon could be stored in this largely unexplored habitat. From recent studies using various culture-independent techniques, no clear picture has yet emerged as to whether Archaea or Bacteria are more abundant in this extensive ecosystem. Here we show that in subsurface sediments buried deeper than 1 m in a wide range of oceanographic settings at least 87% of intact polar membrane lipids, biomarkers for the presence of live cells, are attributable to archaeal membranes, suggesting that Archaea constitute a major fraction of the biomass. Results obtained from modified quantitative polymerase chain reaction and slot-blot hybridization protocols support the lipid-based evidence and indicate that these techniques have previously underestimated archaeal biomass. The lipid concentrations are proportional to those of total organic carbon. On the basis of this relationship, we derived an independent estimate of amounts of cellular carbon in the global marine subsurface biosphere. Our estimate of 90 Pg of cellular carbon is consistent, within an order of magnitude, with previous estimates, and underscores the importance of marine subsurface habitats for global biomass budgets.

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2009-11-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem.

Biomass measurement of methane forming bacteria in environmental samples

NASA Technical Reports Server (NTRS)

Martz, R. F.; Sebacher, D. I.; White, D. C.

1983-01-01

Methane-forming bacteria contain unusual phytanylglycerol ether phospholipids which can be extracted from the bacteria in sediments and assayed quantitatively by high performance liquid chromatography (HPLC). In this procedure the lipids were extracted, the phospholipids recovered, hydrolyzed, purified by thin layer chromatography, derivatized and assayed by HPLC. Ether lipids were recovered quantitatively from Methanobacterium thermoautotrophicum and sediments at levels as low as 8 x 10(-14) moles. In freshwater and marine sediments the flux of methane to the atmosphere and the methane levels in the pore water reflects the recovery of the phytanyl glycerol ether lipid 'signature'. The proportion of the ether phospholipid to the total recoverable phospholipid was highest in anaerobic digester sewage sludge and deeper subsurface freshwater sediment horizons.

Geophysical Monitoring of Coupled Microbial and Geochemical Processes During Stimulated Subsurface Bioremediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, Kenneth H.; Kemna, Andreas; Wilkins, Michael J.

2009-08-05

Understanding how microorganisms alter their physical and chemical environment during bioremediation is hindered by our inability to resolve subsurface microbial activity with high spatial resolution. Here we demonstrate the use of a minimally invasive geophysical technique to monitor stimulated microbial activity during acetate amendment in an aquifer near Rifle, Colorado. During electrical induced polarization (IP) measurements, spatiotemporal variations in the phase response between imposed electric current and the resultant electric field correlated with changes in groundwater geochemistry accompanying stimulated iron and sulfate reduction and sulfide mineral precipitation. The magnitude of the phase response varied with measurement frequency (0.125 and 1more » Hz) andwasdependent upon the dominant metabolic process. The spectral effect was corroborated using a biostimulated column experiment containing Rifle sediments and groundwater. Fluids and sediments recovered from regions exhibiting an anomalous phase response were enriched in Fe(II), dissolved sulfide, and cell-associated FeS nanoparticles. The accumulation of mineral precipitates and electroactive ions altered the ability of pore fluids to conduct electrical charge, accounting for the anomalous IP response and revealing the usefulness of multifrequency IP measurements for monitoring mineralogical and geochemical changes accompanying stimulated subsurface bioremediation.« less

Idaho National Laboratory Vadose Zone Research Park Geohydrological Monitoring Results

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kristine Baker

2006-01-01

Vadose zone lithology, hydrological characterization of interbed sediments, and hydrological data from subsurface monitoring of Idaho Nuclear Technology and Engineering Center wastewater infiltration are presented. Three-dimensional subsurface lithology of the vadose zone beneath the Vadose Zone Research Park is represented in a 2 dimensional (2 D) diagram showing interpolated lithology between monitoring wells. Laboratory-measured values for saturated hydraulic conductivity and porosity are given for three major interbeds, denoted as the B BC interbed (20 to 35 m bls), the C D interbed (40 to 45 m bls), and the DE 1 2 interbed (55 to 65 m bls), along withmore » an overall physical description of the sediments and geologic depositional environments. Pre-operational pore water pressure conditions are presented to show the presence and location of perched water zones before pond discharge at the New Percolation Ponds. Subsurface infiltration conditions during initial high-volume discharge are presented to show water arrival times and arrival sequences. Steady-state conditions are then presented to show formation and locations of perched water zones and recharge sources after several months of discharge to the New Percolation Ponds.« less

Sedimentary and geochemical signature of the 2016 Kaikōura Tsunami at Little Pigeon Bay: A depositional benchmark for the Banks Peninsula region, New Zealand

NASA Astrophysics Data System (ADS)

Williams, Shaun; Zhang, Tianran; Chagué, Catherine; Williams, James; Goff, James; Lane, Emily M.; Bind, Jochen; Qasim, Ilyas; Thomas, Kristie-Lee; Mueller, Christof; Hampton, Sam; Borella, Josh

2018-07-01

The 14 November 2016 Kaikōura Tsunami inundated Little Pigeon Bay in Banks Peninsula, New Zealand, and left a distinct sedimentary deposit, on the ground and within the cottage near the shore. Sedimentary (grain size) and geochemical (electrical conductivity and X-Ray Fluorescence) analyses on samples collected over successive field campaigns are used to characterize the deposits. Sediment distribution observed in the cottage in combination with flow direction indicators suggests that sediment and debris laid down within the building were predominantly the result of a single wave that had been channeled up the stream bed rather than from offshore. Salinity data indicated that the maximum tsunami-wetted and/or seawater-sprayed area extended 12.5 m farther inland than the maximum inundation distance inferred from the debris line observed a few days after the event. In addition, the salinity signature was short-lived. An overall inland waning of tsunami energy was indicated by the mean grain size and portable X-Ray Fluorescence elemental results. ITRAX data collected from three cores along an inland transect indicated a distinct elevated elemental signature at the surfaces of the cores, with an associated increase in magnetic susceptibility. Comparable signatures were also identified within subsurface stratigraphic sequences, and likely represent older tsunamis known to have inundated this bay as well as adjacent bays in Banks Peninsula. The sedimentary and geochemical signatures of the 2016 Kaikōura Tsunami at Little Pigeon Bay provide a modern benchmark that can be used to identify older tsunami deposits in the Banks Peninsula region.

Examining Submarine Ground-Water Discharge into Florida Bay by using 222Rn and Continuous Resistivity Profiling

USGS Publications Warehouse

Swarzenski, Peter; Reich, Chris; Rudnick, David

2009-01-01

Estimates of submarine ground-water discharge (SGD) into Florida Bay remain one of the least understood components of a regional water balance. To quantify the magnitude and seasonality of SGD into upper Florida Bay, research activities included the use of the natural geochemical tracer, 222Rn, to examine potential SGD hotspots (222Rn surveys) and to quantify the total (saline + fresh water component) SGD rates at select sites (222Rn time-series). To obtain a synoptic map of the 222Rn distribution within our study site in Florida Bay, we set up a flow-through system on a small boat that consisted of a Differential Global Positioning System, a calibrated YSI, Inc CTD sensor with a sampling rate of 0.5 min, and a submersible pump (z = 0.5 m) that continuously fed water into an air/water exchanger that was plumbed simultaneously into four RAD7 222Rn air monitors. To obtain local advective ground-water flux estimates, 222Rn time-series experiments were deployed at strategic positions across hydrologic and geologic gradients within our study site. These time-series stations consisted of a submersible pump, a Solinist DIVER (to record continuous CTD parameters) and two RAD7 222Rn air monitors plumbed into an air/water exchanger. Repeat time-series 222Rn measurements were conducted for 3-4 days across several tidal excursions. Radon was also measured in the air during each sampling campaign by a dedicated RAD7. We obtained ground-water discharge information by calculating a 222Rn mass balance that accounted for lateral and horizontal exchange, as well as an appropriate ground-water 222Rn end member activity. Another research component utilized marine continuous resistivity profiling (CRP) surveys to examine the subsurface salinity structure within Florida Bay sediments. This system consisted of an AGI SuperSting 8 channel receiver attached to a streamer cable that had two current (A,B) electrodes and nine potential electrodes that were spaced 10 m apart. A separate DGPS continuously sent position information to the SuperSting. Results indicate that the 222Rn maps provide a useful gauge of relative ground-water discharge into upper Florida Bay. The 222Rn time-series measurements provide a reasonable estimate of site- specific total (saline and fresh) ground-water discharge (mean = 12.5+-11.8 cm d-1), while the saline nature of the shallow ground-water at our study site, as evidenced by CPR results, indicates that most of this discharge must be recycled sea water. The CRP data show some interesting trends that appear to be consistent with subsurface geologic and hydrologic characterization. For example, some of the highest resistivity (electrical conductivity-1) values were recorded where one would expect a slight subsurface freshening (for example bayside Key Largo, or below the C111 canal).

Geochemical studies of backfill aggregates, lake sediment cores and the Hueco Bolson Aquifer

NASA Astrophysics Data System (ADS)

Thapalia, Anita

This dissertation comprises of three different researches that focuses on the application of geochemistry from aggregates, lake sediment cores and Hueco Bolson Aquifer. Each study is independent and presented in the publication format. The first chapter is already published and the second chapter is in revision phase. Overall, three studies measure the large scale (field) as well as bench scale (lab) water-rock interactions influenced by the climatic and anthropogenic factors spans from the field of environmental geology to civil engineering. The first chapter of this dissertation addresses the chemical evaluation of coarse aggregates from six different quarries in Texas. The goal of this work is to find out the best geochemical methods for assessing the corrosion potential of coarse aggregates prior to their use in mechanically stabilized earth walls. Electrochemical parameters help to define the corrosion potential of aggregates following two different leaching protocols. Testing the coarse and fine aggregates demonstrate the chemical difference due to size-related kinetic leaching effects. Field fines also show different chemistry than the bulk rock indicating the weathering impact on carbonate rocks. The second chapter investigates zinc (Zn) isotopic signatures from eight lake sediment cores collected both from pristine lakes and those impacted by urban anthropogenic contamination. Zinc from the natural weathering of rocks and anthropogenic atmospheric pollutants are transported to these lakes and the signatures are recorded in the sediments. Isotopic analysis of core samples provides the signature of anthropogenic contamination sources. Dated sediment core and isotopic analysis can identify Zn inputs that are correlated to the landuse and population change of the watersheds. Comparison of isotopic data from both pristine and urban lake sediment core also serves as an analog in other lake sediment cores in the world. The third chapter studies on Hueco Bolson Aquifer that an important sources of water in the El Paso/Cd. Juraez metroplex. To delineate the boundary between fresh and brackish water from the northern Hueco Bolson Aquifer, we utilize an integrative geochemical, geophysical, and sedimentological approach. The goal of this study is to use geophysical well-log analysis and the water chemical analysis for identifying the changes in the quality of the groundwater. A detailed microgravity survey is utilized to explore the subsurface geological structures that control the conduits and/or barriers of groundwater flow. A detailed geochemical analysis of aquifer samples provide salinity of groundwater that will complement to the subsurface structures obtained from the geophysical study. This fundamental research in developing methods from an integrated approach to estimate aquifer quality can be used as an analog for similar studies in other arid regions.

Characterization and quantification of suspended sediment sources to the Manawatu River, New Zealand.

PubMed

Vale, S S; Fuller, I C; Procter, J N; Basher, L R; Smith, I E

2016-02-01

Knowledge of sediment movement throughout a catchment environment is essential due to its influence on the character and form of our landscape relating to agricultural productivity and ecological health. Sediment fingerprinting is a well-used tool for evaluating sediment sources within a fluvial catchment but still faces areas of uncertainty for applications to large catchments that have a complex arrangement of sources. Sediment fingerprinting was applied to the Manawatu River Catchment to differentiate 8 geological and geomorphological sources. The source categories were Mudstone, Hill Subsurface, Hill Surface, Channel Bank, Mountain Range, Gravel Terrace, Loess and Limestone. Geochemical analysis was conducted using XRF and LA-ICP-MS. Geochemical concentrations were analysed using Discriminant Function Analysis and sediment un-mixing models. Two mixing models were used in conjunction with GRG non-linear and Evolutionary optimization methods for comparison. Discriminant Function Analysis required 16 variables to correctly classify 92.6% of sediment sources. Geological explanations were achieved for some of the variables selected, although there is a need for mineralogical information to confirm causes for the geochemical signatures. Consistent source estimates were achieved between models with optimization techniques providing globally optimal solutions for sediment quantification. Sediment sources was attributed primarily to Mudstone, ≈38-46%; followed by the Mountain Range, ≈15-18%; Hill Surface, ≈12-16%; Hill Subsurface, ≈9-11%; Loess, ≈9-15%; Gravel Terrace, ≈0-4%; Channel Bank, ≈0-5%; and Limestone, ≈0%. Sediment source apportionment fits with the conceptual understanding of the catchment which has recognized soft sedimentary mudstone to be highly susceptible to erosion. Inference of the processes responsible for sediment generation can be made for processes where there is a clear relationship with the geomorphology, but is problematic for processes which occur within multiple terrains. Copyright © 2015 Elsevier B.V. All rights reserved.

Active fungi amidst a marine subsurface RNA paleome

NASA Astrophysics Data System (ADS)

Orsi, W.; Biddle, J.; Edgcomb, V.

2012-12-01

The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Since extracellular DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA) is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA signatures by amplicon pyrosequencing, metazoan, plant, and diatom rRNA signatures were recovered from marine sediments up to 2.7 million years old, suggesting that rRNA may be much more stable than previously considered in the marine subsurface. This finding confirms the concept of a paleome, extending it to include rRNA. Within the same dataset, unique profiles of fungi were found across a range of marine subsurface provinces exhibiting statistically significant correlations with total organic carbon (TOC), sulfide, and dissolved inorganic carbon (DIC). Sequences from metazoans, plants and diatoms showed different correlation patterns, consistent with a depth-controlled paleome. The fungal correlations with geochemistry allow the inference that some fungi are active and adapted for survival in the marine subsurface. A metatranscriptomic analysis of fungal derived mRNA confirms that fungi are metabolically active and utilize a range of organic and inorganic substrates in the marine subsurface.

Application of RHIZON samplers to obtain high-resolution pore-fluid records during geochemical investigations of gas hydrate systems

USGS Publications Warehouse

Pohlman, John W.; Riedel, M; Waite, William F.; Rose, K.; Lapham, L.

2008-01-01

Obtaining accurate, high-resolution profiles of pore fluid constituents is critical for characterizing the subsurface geochemistry of hydrate-bearing sediments. Tightly-constrained downcore profiles provide clues about fluid sources, fluid flow, and the milieu of chemical and diagenetic reactions, all of which are used to interpret where and why gas and gas hydrate occur in the natural environment. Because a profile’s quality is only as good as the samples from which the data are obtained, a great deal of effort has been exerted to develop extraction systems suited to various sedimentary regimes. Pore water from deeply buried sediment recovered by scientific drilling is typically squeezed with a hydraulic press (Manheim, 1966); whereas pore water in near-surface, less consolidated sediment is more efficiently pushed from the sediment using compressed gas (Reeburgh, 1967) or centrifugation.

Annual sediment flux estimates in a tidal strait using surrogate measurements

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.

2006-01-01

Annual suspended-sediment flux estimates through Carquinez Strait (the seaward boundary of Suisun Bay, California) are provided based on surrogate measurements for advective, dispersive, and Stokes drift flux. The surrogates are landward watershed discharge, suspended-sediment concentration at one location in the Strait, and the longitudinal salinity gradient. The first two surrogates substitute for tidally averaged discharge and velocity-weighted suspended-sediment concentration in the Strait, thereby providing advective flux estimates, while Stokes drift is estimated with suspended-sediment concentration alone. Dispersive flux is estimated using the product of longitudinal salinity gradient and the root-mean-square value of velocity-weighted suspended-sediment concentration as an added surrogate variable. Cross-sectional measurements validated the use of surrogates during the monitoring period. During high freshwater flow advective and dispersive flux were in the seaward direction, while landward dispersive flux dominated and advective flux approached zero during low freshwater flow. Stokes drift flux was consistently in the landward direction. Wetter than average years led to net export from Suisun Bay, while dry years led to net sediment import. Relatively low watershed sediment fluxes to Suisun Bay contribute to net export during the wet season, while gravitational circulation in Carquinez Strait and higher suspended-sediment concentrations in San Pablo Bay (seaward end of Carquinez Strait) are responsible for the net import of sediment during the dry season. Annual predictions of suspended-sediment fluxes, using these methods, will allow for a sediment budget for Suisun Bay, which has implications for marsh restoration and nutrient/contaminant transport. These methods also provide a general framework for estimating sediment fluxes in estuarine environments, where temporal and spatial variability of transport are large. ?? 2006 Elsevier Ltd. All rights reserved.

Impacts of preferential flow on coastal groundwater-surface water interactions: The heterogeneous volcanic aquifer of Hawaii

NASA Astrophysics Data System (ADS)

Geng, X.; Kreyns, P.; Koneshloo, M.; Michael, H. A.

2017-12-01

Groundwater flow and salt transport processes are important for protection of coastal water resources and ecosystems. Geological heterogeneity has been recognized as a key factor affecting rates and patterns of groundwater flow and the evolution of subsurface salinity distributions in coastal aquifers. The hydrogeologic system of the volcanic Hawaiian Islands is characterized by lava flows that can form continuous, connected geologic structures in subsurface. Understanding the role of geological heterogeneity in aquifer salinization and water exchange between aquifers and the ocean is essential for effective assessment and management of water resources in the Hawaii islands. In this study, surface-based geostatistical techniques were adopted to generate geologically-realistic, statistically equivalent model realizations of the hydrogeologic system on the Big Island of Hawaii. The density-dependent groundwater flow and solute transport code SEAWAT was used to perform 3D simulations to investigate subsurface flow and salt transport through these random realizations. Flux across the aquifer-ocean interface, aquifer salinization, and groundwater flow pathways and associated transit times were quantified. Numerical simulations of groundwater pumping at various positions in the aquifers were also conducted, and associated impacts on saltwater intrusion rates were evaluated. Results indicate the impacts of continuous geologic features on large-scale groundwater processes in coastal aquifers.

Effects of structural marsh management and salinity on invertebrate prey of waterbirds in marsh ponds during winter on the Gulf Coast Chenier Plain

USGS Publications Warehouse

Bolduc, F.; Afton, A.D.

2003-01-01

Aquatic invertebrates are important food resources for wintering waterbirds, and prey selection generally is limited by prey size. Aquatic invertebrate communities are influenced by sediments and hydrologic characteristics of wetlands, which were affected by structural marsh management (levees, water-control structures and impoundments; SMM) and salinity on the Gulf Coast Chenier Plain of North America. Based on previous research, we tested general predictions that SMM reduces biomass of infaunal invertebrates and increases that of epifaunal invertebrates and those that tolerate low levels of dissolved oxygen (O2) and salinity. We also tested the general prediction that invertebrate biomass in freshwater, oligohaline, and mesohaline marshes are similar, except for taxa adapted to specific ranges of salinity. Finally, we investigated relationships among invertebrate biomass and sizes, sediment and hydrologic variables, and marsh types. Accordingly, we measured biomass of common invertebrate by three size classes (63 to 199 ??m, 200 to 999 ??m, and ???1000 ??m), sediment variables (carbon content, C:N ratio, hardness, particle size, and O, penetration), and hydrologic variables (salinity, water depth,temperature, 02, and turbidity) in ponds of impounded freshwater (IF), oligohaline (IO), mesohaline (IM), and unimpounded mesohaline (UM) marshes during winters 1997-1998 to 1999-2000 on Rockefeller State Wildlife Refuge, near Grand Chenier, Louisiana, USA. As predicted, an a priori multivariate analysis of variance (MANOVA) contrast indicated that biomass of an infaunal class of invertebrates (Nematoda, 63 to 199 ??m) was greater in UM marsh ponds than in those of IM marshes, and biomass of an epifaunal class of invertebrates (Ostracoda, 200 to 999 ??m) was greater in IM marsh ponds than in those of UM marshes. The observed reduction in Nematoda due to SMM also was consistent with the prediction that SMM reduces invertebrates that do not tolerate low salinity. Furthermore, as predicted, an a priori MANOVA contrast indicated that biomass of a single invertebrate class adapted to low salinity (Oligochaeta, 200 to 999 ??m) was greater in ponds of IF marshes than in those of IO and IM marshes. A canonical correspondence analysis indicated that variation in salinity and O2 penetration best explained differences among sites that maximized biomass of the common invertebrate classes. Salinity was positively correlated with the silt-clay fraction, O2, and O2 penetration, and negatively correlated with water depth, sediment hardness, carbon, and C:N. Nematoda, Foraminifera, and Copepoda generally were associated with UM marsh ponds and high salinity, whereas other invertebrate classes were distributed among impounded marsh ponds and associated with lower salinity. Our results suggest that SMM and salinity have relatively small effects on invertebrate prey of wintering waterbirds in marsh ponds because they affect biomass of Nematoda and Oligochaeta, and few waterbirds consume these invertebrates. ?? 2003, The Society of Wetland Scientists.

Role of subsurface ocean in decadal climate predictability over the South Atlantic.

PubMed

Morioka, Yushi; Doi, Takeshi; Storto, Andrea; Masina, Simona; Behera, Swadhin K

2018-06-04

Decadal climate predictability in the South Atlantic is explored by performing reforecast experiments using a coupled general circulation model with two initialization schemes; one is assimilated with observed sea surface temperature (SST) only, and the other is additionally assimilated with observed subsurface ocean temperature and salinity. The South Atlantic is known to undergo decadal variability exhibiting a meridional dipole of SST anomalies through variations in the subtropical high and ocean heat transport. Decadal reforecast experiments in which only the model SST is initialized with the observation do not predict well the observed decadal SST variability in the South Atlantic, while the other experiments in which the model SST and subsurface ocean are initialized with the observation skillfully predict the observed decadal SST variability, particularly in the Southeast Atlantic. In-depth analysis of upper-ocean heat content reveals that a significant improvement of zonal heat transport in the Southeast Atlantic leads to skillful prediction of decadal SST variability there. These results demonstrate potential roles of subsurface ocean assimilation in the skillful prediction of decadal climate variability over the South Atlantic.

Sedimentology of the saline lakes of the Cariboo Plateau, Interior British Columbia, Canada

NASA Astrophysics Data System (ADS)

Renaut, Robin W.; Long, Peter R.

1989-10-01

There are several hundred saline lakes in Interior British Columbia, including muddy siliciclastic playas, saline playas, perennial lakes (including meromictic sulphate lakes), and ephemeral lakes, some with permanent salts. The lake waters have highly variable compositions, with Na-CO 3-Cl, Na-CO 3-(SO 4)-Cl, Mg-Na-SO 4 and Na-Mg-SO 4, the dominant types of brine. On the Cariboo Plateau, where they are most abundant, the saline lakes are small, shallow, and occupy depressions within glacial and glacio-fluvial deposits. Most are groundwater-fed. The region is characterized by extremely cold winters and short hot summers. Dense coniferous forest mantles much of the plateau and surrounds most of the lakes. Most basins comprise three main subenvironments—hillslope, mudflat (saline and dry) and lake (ephemeral or perennial). Fluvial sediments are of little significance. Mudflats are primarily a zone of extensive interstitial carbonate precipitation from shallow groundwaters, including abundant magnesite and hydromagnesite. The amount of carbonate formed varies with groundwater composition. Some mudflats are carbonate-dominated; others are predominantly siliciclastic with only highly soluble interstitial salts forming. Sedimentary structures are disrupted by carbonate precipitation and displacive salt crystallization. Springs and ephemeral seepages are locally present. Microbial mats form extensively along many littoral zones and around springs; laminates are preserved in some cores. Efflorescent salt crusts cover saline mudflats around most lakes and playas. Subaqueous salts (including natron, epsomite, bloedite, mirabilite) are precipitated during late summer, autumn and winter in several hypersaline lakes, some by evaporative concentration, others by brine cooling and freeze-out. Several hypersaline, ephemeral lakes have an unusual "spotted" morphology, with hundreds of individual brine pools within carbonate-siliciclastic muds. Most recent sedimentation in the Cariboo lakes has been autochthonous, with a predominance of carbonates, evaporites and organic-rich muds. This reflects the dense vegetation in the catchment which has stabilized soils and limited clastic influx, the predominance of groundwater recharge, the lack of basin marginal relief, and the common occurrence of inflow waters with {( Ca + Mg) }/{( HCO 3 + CO 3) } near unity which provide abundant carbonate sediment.

Modern foraminiferal facies in a subtropical estuarine channel, Bertioga, São Paulo, Brazil

USGS Publications Warehouse

Eichler, P.P.B.; Eichler, B.B.; De Miranda, L. B.; Rodrigues, A.R.

2007-01-01

Numerical analyses of modern foraminiferal abundance and environmental data from the Bertioga Channel (Sa??o Paulo, Brazil) reveal multiple biofacies within an overall paralic setting. Despite its fisheries, mariculture and attraction to tourists, the environmental state of Bertioga Channel remains poorly studied. The present investigation is an attempt to partly fill this gap; the parameters examined include depth, salinity, temperature, organic carbon, sulfur content and bottom sediment type. Muddy sediments with high organic carbon content derived from land drainage are found in the inner parts of the channel, whereas sandy sediment dominates the areas adjacent to the Atlantic Ocean. In the eastern entrance to the channel, sandy sediment contain species of Rotaliida from Facies 1 (including Elphidium discoidale, Elphidium poeyanum, Hanzawaia boueana, Pararotalia cananeiaensis and Nonionella atlantica), reflecting normal marine salinity. Sediments with high percentages of silt and clay in polyhaline and eurybaline environments of the eastern part and Itapanhau?? River contain Facies 2, which includes Ammonia beccarii and Pararotalia cananeiaensis. In the western entrance and central, western and eastern parts, where salinities vary from 18 to 30 psu and the sediments contain both low and high organic carbon, the foraminifera from Facies 3 are dominated by Quinqueloculina milletti, Arenoparrella mexicana, Pararotalia cananeiaensis, Ammonia beccarii, Buliminella elegantissima, Elphidium sp., Elphidium excavatum, Elphidium gunteri and Elphidium poeyanum. In mesohaline and polyhaline waters of the central part, the organic-carbon-rich silt and clay contain Facies 4, which includes Ammonia beccarii, Pararotalia cananeiaensis, Elphidium excavatum and Elphidium sp. Most of organic-carbon-enriched, silty-clay substrates that are subject to the highest fresh-water discharge and high bottom temperatures support two different assemblages: one of mostly Rotaliina and the other mostly of Textulariida (Facies 5 and 6). Facies 5 includes Ammonia beecarii, Elphidium excavatum, Arenoparrella mexicana, Haplophragmoides wilberti, Siphotrochammina lobata, Trochammina inflata and Trochammina sp., all of which are typical of mesohaline sites (mainly Crumau?? and Trindade rivers), and Facies 6 includes Bolivina sp., Ammoastuta salsa, Arenoparrella mexicana, Haplophragmoides wilberti and Trochammina sp., all of which are typical of oligohaline and mesohaline mangrove fringes. The foraminiferal species from the present study are frequently found in paralic environments in Brazil, western Africa and other estuaries around the world.

Shifts in the community structure and activity of anaerobic ammonium oxidation bacteria along an estuarine salinity gradient

NASA Astrophysics Data System (ADS)

Zheng, Yanling; Jiang, Xiaofen; Hou, Lijun; Liu, Min; Lin, Xianbiao; Gao, Juan; Li, Xiaofei; Yin, Guoyu; Yu, Chendi; Wang, Rong

2016-06-01

Anaerobic ammonium oxidation (anammox) is a major microbial pathway for nitrogen (N) removal in estuarine and coastal environments. However, understanding of anammox bacterial dynamics and associations with anammox activity remains scarce along estuarine salinity gradient. In this study, the diversity, abundance, and activity of anammox bacteria, and their potential contributions to total N2 production in the sediments along the salinity gradient (0.1-33.8) of the Yangtze estuarine and coastal zone, were studied using 16S rRNA gene clone library, quantitative polymerase chain reaction assay, and isotope-tracing technique. Phylogenetic analysis showed a significant change in anammox bacterial community structure along the salinity gradient (P < 0.01), with the dominant genus shifting from Brocadia in the freshwater region to Scalindua in the open ocean. Anammox bacterial abundance ranged from 3.67 × 105 to 8.22 × 107 copies 16S rRNA gene g-1 and related significantly with salinity (P < 0.05). The anammox activity varied between 0.08 and 6.46 nmol N g-1 h-1 and related closely with anammox bacterial abundance (P < 0.01). Contributions of anammox activity to total N loss were highly variable along the salinity gradient, ranging from 5 to 77% and were significantly negatively correlated with salinity (P < 0.01). Sediment organic matter was also recognized as an important factor in controlling the relative role of anammox to total N2 production in the Yangtze estuarine and coastal zone. Overall, our data demonstrated a biogeographical distribution of anammox bacterial diversity, abundance, and activity along the estuarine salinity gradient and suggested that salinity is a major environmental control on anammox process in the estuarine and coastal ecosystems.

Exopolysaccharide production by a marine Pseudoalteromonas sp. strain isolated from Madeira Archipelago ocean sediments.

PubMed

Roca, Christophe; Lehmann, Mareen; Torres, Cristiana A V; Baptista, Sílvia; Gaudêncio, Susana P; Freitas, Filomena; Reis, Maria A M

2016-06-25

Exopolysaccharides (EPS) are polymers excreted by some microorganisms with interesting properties and used in many industrial applications. A new Pseudoalteromonas sp. strain, MD12-642, was isolated from marine sediments and cultivated in bioreactor in saline culture medium containing glucose as carbon source. Its ability to produce EPS under saline conditions was demonstrated reaching an EPS production of 4.4g/L within 17hours of cultivation, corresponding to a volumetric productivity of 0.25g/Lh, the highest value so far obtained for Pseudoalteromonas sp. strains. The compositional analysis of the EPS revealed the presence of galacturonic acid (41-42mol%), glucuronic acid (25-26mol%), rhamnose (16-22mol%) and glucosamine (12-16mol%) sugar residues. The polymer presents a high molecular weight (above 1000kDa). These results encourage the biotechnological exploitation of strain MD12-642 for the production of valuable EPS with unique composition, using saline by-products/wastes as feedstocks. Copyright © 2016 Elsevier B.V. All rights reserved.

Climatic variability in the eastern United States over the past millenium from Chesapeake Bay sediments

USGS Publications Warehouse

Cronin, T.; Willard, D.; Karlsen, A.; Ishman, S.; Verardo, S.; McGeehin, J.; Kerhin, R.; Holmes, C.; Colman, S.; Zimmerman, A.

2000-01-01

Salinity oscillations caused by multidecadal climatic variability had major impacts on the Chesapeake Bay estuarine ecosystem during the past 1000 yr. Microfossils from sediments dated by radiometry (14C, 137Cs, 210Pb) and pollen stratigraphy indicate that salinity in mesohaline regions oscillated 10-15 ppt during periods of extreme drought (low fresh-water discharge) and wet climate (high discharge). During the past 500 yr, 14 wet-dry cycles occurred, including sixteenth and early seventeenth century megadroughts that exceeded twentieth century droughts in their severity. These droughts correspond to extremely dry climate also recorded in North American tree-ring records and by early colonists. Wet periods occurred every ~60-70 yr, began abruptly, lasted <20 yr, and had mean annual rainfall ~25%-30% and fresh-water discharge ~40%-50% greater than during droughts. A shift toward wetter regional climate occurred in the early nineteenth century, lowering salinity and compounding the effects of agricultural land clearance on bay ecosystems.

Shallow groundwater and soil chemistry response to 3 years of subsurface drip irrigation using coalbed-methane-produced water

USGS Publications Warehouse

Bern, Carleton R.; Boehlke, Adam R.; Engle, Mark A.; Geboy, Nicholas J.; Schroeder, K.T.; Zupancic, J.W.

2013-01-01

Disposal of produced waters, pumped to the surface as part of coalbed methane (CBM) development, is a significant environmental issue in the Wyoming portion of the Powder River Basin, USA. High sodium adsorption ratios (SAR) of the waters could degrade agricultural land, especially if directly applied to the soil surface. One method of disposing of CBM water, while deriving beneficial use, is subsurface drip irrigation (SDI), where acidified CBM waters are applied to alfalfa fields year-round via tubing buried 0.92 m deep. Effects of the method were studied on an alluvial terrace with a relatively shallow depth to water table (∼3 m). Excess irrigation water caused the water table to rise, even temporarily reaching the depth of drip tubing. The rise corresponded to increased salinity in some monitoring wells. Three factors appeared to drive increased groundwater salinity: (1) CBM solutes, concentrated by evapotranspiration; (2) gypsum dissolution, apparently enhanced by cation exchange; and (3) dissolution of native Na–Mg–SO4 salts more soluble than gypsum. Irrigation with high SAR (∼24) water has increased soil saturated paste SAR up to 15 near the drip tubing. Importantly though, little change in SAR has occurred at the surface.

Shallow groundwater and soil chemistry response to 3 years of subsurface drip irrigation using coalbed-methane-produced water

NASA Astrophysics Data System (ADS)

Bern, C. R.; Boehlke, A. R.; Engle, M. A.; Geboy, N. J.; Schroeder, K. T.; Zupancic, J. W.

2013-12-01

Disposal of produced waters, pumped to the surface as part of coalbed methane (CBM) development, is a significant environmental issue in the Wyoming portion of the Powder River Basin, USA. High sodium adsorption ratios (SAR) of the waters could degrade agricultural land, especially if directly applied to the soil surface. One method of disposing of CBM water, while deriving beneficial use, is subsurface drip irrigation (SDI), where acidified CBM waters are applied to alfalfa fields year-round via tubing buried 0.92 m deep. Effects of the method were studied on an alluvial terrace with a relatively shallow depth to water table (˜3 m). Excess irrigation water caused the water table to rise, even temporarily reaching the depth of drip tubing. The rise corresponded to increased salinity in some monitoring wells. Three factors appeared to drive increased groundwater salinity: (1) CBM solutes, concentrated by evapotranspiration; (2) gypsum dissolution, apparently enhanced by cation exchange; and (3) dissolution of native Na-Mg-SO4 salts more soluble than gypsum. Irrigation with high SAR (˜24) water has increased soil saturated paste SAR up to 15 near the drip tubing. Importantly though, little change in SAR has occurred at the surface.

The influence of near-bed hydrodynamic conditions on cold-water corals in the Viosca Knoll area, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Mienis, F.; Duineveld, G. C. A.; Davies, A. J.; Ross, S. W.; Seim, H.; Bane, J.; van Weering, T. C. E.

2012-01-01

Near-bed hydrodynamic conditions were recorded for almost one year in the Viosca Knoll area (lease block 826), one of the most well-developed cold-water coral habitats in the Gulf of Mexico. Here, a reef-like cold-water coral ecosystem, dominated by the coral Lophelia pertusa, resembles coral habitats found off the southeastern US coast and the North East Atlantic. Two landers were deployed in the vicinity and outside of the coral habitat and measured multiple near-bed parameters, including temperature, salinity, current speed and direction and optical and acoustic backscatter. Additionally, the lander deployed closest to the coral area was equipped with a sediment trap that collected settling particles over the period of deployment at 27 day intervals. Long-term monitoring showed, that in general, environmental parameters, such as temperature (6.5-11.6 °C), salinity (34.95-35.4) and current speed (average 8 cm s -1, peak current speed up to 38 cm s -1) largely resembled conditions previously recorded within North East Atlantic coral habitats. Major differences between site VK 826 and coral areas in the NE Atlantic were the much higher particle load, and the origin of the particulate matter. Several significant events occurred during the deployment period beginning with an increase in current speed followed by a gradual increase in temperature and salinity, followed by a rapid decrease in temperature and salinity. Simultaneously with the decrease in temperature and salinity, the direction of the current changed from west to east and cold and less turbid water was transported upslope. The most prominent event occurred in July, when a westward flow lasted over 21 days. These events are consistent with bottom boundary layer dynamics influenced by friction (bottom Ekman layer). The Mississippi River discharges large quantities of sediment and dominates sedimentation regimes in the area. Furthermore, the Mississippi River disperses large amounts of terrestrial organic matter and nutrients, resulting in increased primary productivity, whereby marine organic matter is produced that will sink to the seafloor and can serve as food for the cold-water corals and associated species. As a result mass fluxes from the sediment trap were higher (1120-4479 mg m -2 day -1) than those observed in the North East Atlantic and were highest during periods of westward-flow, which corresponded to warm turbid water. During eastward-flow, colder and less turbid water was pushed upslope, resulting in lower mass fluxes. Trap samples had a low CaCO 3, high organic carbon content and high C/N ratios, suggesting a fluvial origin. The high sediment load in the water column can be a limiting factor for coral growth, especially since the corals can be smothered with sediment. However, eastward-flows provided periods of relatively clearer water that can remove sediment from the coral area and allow corals to expel sediment from their polyps. Around Viosca Knoll food supply comes from two possible sources. During April and June several fluorescence peaks were observed near the seabed, showing the arrival of phytodetritus in the area. Furthermore, a consistent diel vertical migration of zooplankton was observed that might provide an additional food source.

Entrainment and mixing of shelf/slope waters in the near-surface Gulf Stream

NASA Astrophysics Data System (ADS)

Lillibridge, J. L., III; Hitchcock, G.; Rossby, T.; Lessard, E.; Mork, M.; Golmen, L.

1990-08-01

An interdisciplinary study of the entrainment of shelf and slope waters in the Gulf Stream front was undertaken in October 1985 northeast of Cape Hatteras. Fifteen hydrographic transects of the Gulf Stream front and of the shelf water intrusion known as Ford water were completed in 2 1/2 days with a towed undulating profiler, the SeaSoar, equipped with a conductivity-temperature-depth probe and a fluorometer. Upstream sections within 50 km of the shelf break show entrainment of surface and subsurface waters along the northern edge of the high-velocity Gulf Stream. The low-salinity core, first observed at 70 m, is subducted to >100 m. The subsurface Ford water is also at a maximum in chlorophyll, fluorescence, and dissolved oxygen and contains a distinct diatom assemblage of nearshore species. Productivity rates in the Ford water may be equivalent to those in slope waters. Expendable current profilers yield an estimated transport for subsurface shelf waters of 1 to 5×105 m3 s-1 and indicate that vertical shear at the depth of maximum static stability is typically 2×10-2 s-1. A bulk Richardson number is estimated over vertical scales of several meters by combining SeaSoar density profiles with velocity shear from concurrent expendable current profiler deployments. The minimum values are generally >1, and only infrequently are they at or below the 0.25 threshold for shear instability. The presence of double-diffusive processes around the low-salinity core of Ford water is indicated by elevated conductivity Cox numbers. The stability parameter "Turner angle" shows that low-salinity Ford water and its associated T-S property front are sites of double-diffusive mixing, given general agreement between the distributions of Turner angle and Cox number. We conclude that double-diffusive processes are more important than shear flow instability in governing cross-isopycnal mixing. However, downstream transit times are so swift that no measurable change or decay occurs in the Ford water. This explains the occurrence of distinct shelf water phytoplankton species within the low-salinity waters downstream of Cape Hatteras.

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE PAGES

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly; ...

2016-05-10

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Microbially catalyzed nitrate-dependent metal/radionuclide oxidation in shallow subsurface sediments

NASA Astrophysics Data System (ADS)

Weber, K.; Healy, O.; Spanbauer, T. L.; Snow, D. D.

2011-12-01

Anaerobic, microbially catalyzed nitrate-dependent metal/radionuclide oxidation has been demonstrated in a variety of sediments, soils, and groundwater. To date, studies evaluating U bio-oxidation and mobilization have primarily focused on anthropogenically U contaminated sites. In the Platte River Basin U originating from weathering of uranium-rich igneous rocks in the Rocky Mountains was deposited in shallow alluvial sediments as insoluble reduced uranium minerals. These reduced U minerals are subject to reoxidation by available oxidants, such nitrate, in situ. Soluble uranium (U) from natural sources is a recognized contaminant in public water supplies throughout the state of Nebraska and Colorado. Here we evaluate the potential of anaerobic, nitrate-dependent microbially catalyzed metal/radionuclide oxidation in subsurface sediments near Alda, NE. Subsurface sediments and groundwater (20-64ft.) were collected from a shallow aquifer containing nitrate (from fertilizer) and natural iron and uranium. The reduction potential revealed a reduced environment and was confirmed by the presence of Fe(II) and U(IV) in sediments. Although sediments were reduced, nitrate persisted in the groundwater. Nitrate concentrations decreased, 38 mg/L to 30 mg/L, with increasing concentrations of Fe(II) and U(IV). Dissolved U, primarily as U(VI), increased with depth, 30.3 μg/L to 302 μg/L. Analysis of sequentially extracted U(VI) and U(IV) revealed that virtually all U in sediments existed as U(IV). The presence of U(IV) is consistent with reduced Fe (Fe(II)) and low reduction potential. The increase in aqueous U concentrations with depth suggests active U cycling may occur at this site. Tetravalent U (U(IV)) phases are stable in reduced environments, however the input of an oxidant such as oxygen or nitrate into these systems would result in oxidation. Thus co-occurrence of nitrate suggests that nitrate could be used by bacteria as a U(IV) oxidant. Most probable number enumeration of nitrate-dependent U(IV) oxidizing microorganisms demonstrated an abundant community ranging from 1.61x104 to 2.74x104 cells g-1 sediment. Enrichments initiated verified microbial U reduction and U oxidation coupled to nitrate reduction. Sediment slurries were serially diluted and incubated over a period of eight weeks and compared to uninoculated controls. Oxidation (0-4,554 μg/L) and reduction (0-55 μg/L) of U exceeded uninoculated controls further providing evidence of a U biogeochemical cycling in these subsurface sediments. The oxidation of U(IV) could contribute to U mobilization in the groundwater and result in decreased water quality. Not only could nitrate serve as an oxidant, but Fe(III) could also contribute to U mobilization. Nitrate-dependent Fe(II) oxidation is an environmentally ubiquitous process facilitated by a diversity of microorganisms. Additional research is necessary in order to establish a role of biogenic Fe(III) oxides in U geochemical cycling at this site. These microbially mediated processes could also have a confounding effect on uranium mobility in subsurface environments.

Summary of northern Atlantic coastal plain hydrology and its relation to disposal of high-level radioactive waste in buried crystalline rock; a preliminary appraisal

USGS Publications Warehouse

Lloyd, O.B.; Larson, J.D.; Davis, R.W.

1985-01-01

Interpretation of available hydrologic data suggests that some areas beneath the Coastal Plain in the States of Delaware, Maryland, New Jersey, North Carolina, and Virginia might have some potential for the disposal of nuclear waste in crystalline rock that is buried beneath the Coastal Plain sediments. The areas of major interest occur where the top of the basement rock lies between 1,000 and 4,000 feet below sea level, the aquifer(s) immediately above the basement rock are saturated with saline water, confining material overlies the saline water bearing aquifer(s), and groundwater flow in the saline water aquifer(s) can be established. Preliminary data on (1) the distribution and thickness of the lowermost aquifers and confining beds, (2) the distribution of hydraulic conductivity in the lowermost aquifers, (3) estimated hydraulic heads and inferred direction of lateral groundwater flow for 1980, and (4) the distribution of saline water and brine, indicate eastern parts of the study area relatively best meet most of the criteria proposed for sediments that would overlie any potential buried crystalline-rock disposal site.

Characterization and consequences of intermittent sediment oxygenation by macrofauna: interpretation of high-resolution data sets

NASA Astrophysics Data System (ADS)

Meile, C. D.; Dwyer, I.; Zhu, Q.; Polerecky, L.; Volkenborn, N.

2017-12-01

Mineralization of organic matter in marine sediments leads to the depletion of oxygen, while activities of infauna introduce oxygenated seawater to the subsurface. In permeable sediments solutes can be transported from animals and their burrows into the surrounding sediment through advection over several centimeters. The intermittency of pumping leads to a spatially heterogeneous distribution of oxidants, with the temporal dynamics depending on sediment reactivity and activity patterns of the macrofauna. Here, we present results from a series of experiments in which these dynamics are studied at high spatial and temporal resolution using planar optodes. From O2, pH and pCO2 optode data, we quantify rates of O2 consumption and dissolved inorganic carbon production, as well alkalinity dynamics, with millimeter-scale resolution. Simulating intermittent irrigation by imposed pumping patterns in thin aquaria, we derive porewater flow patterns, which together with the production and consumption rates cause the chemical distributions and the establishment of reaction fronts. Our analysis thus establishes a quantitative connection between the locally dynamic redox conditions relevant for biogeochemical transformations and macroscopic observations commonly made with sediment cores.

Seasonal variation in apparent conductivity and soil salinity at two Narragansett Bay salt marshes

EPA Science Inventory

Measurement of the apparent conductivity of salt marsh sediments using electromagnetic induction (EMI) is a rapid alternative to traditional methods of salinity determination that can be used to map soil salinity across a marsh surface. Soil salinity measures can provide informat...

Evaporitic sedimentation in the Southeastern Anatolian Foreland Basin: New insights on the Neotethys closure

NASA Astrophysics Data System (ADS)

Yeşilova, Çetin; Helvacı, Cahit; Carrillo, Emilio

2018-07-01

We integrate stratigraphic, petrographic and geochemical analysis of subsurface data (wells) together with field surveys to study the sedimentation of a marginal Miocene sub-basin of the Southeastern Anatolian Foreland Basin (SEAFB; SE Turkey). This sub-basin, located in the Batman-Siirt region, is characterized by the existence of evaporites (carbonates, sulphates and chlorides) and alluvial detritus which were divided in the following five lithostratigraphic members, from older to younger: Lower and Upper Yapılar; and Lower, Middle and Upper Sulha. These members deposited in an epicontinental mudflat during the Early Miocene. Both the bromine content and the sulphur and oxygen isotope composition (δ34SV-CDT and δ18OV-SMOW) of halite and sulphates samples, respectively, also suggest a marine origin of the precipitation brines. However, influence of geothermal fluids and dissolution-and-re-precipitation of evaporites from uplifted areas in these brines, such as the Early Miocene members and/or Triassic units, is interpreted. Comparing and integrating our results with data documented in previous works, it is here recognized that the depositional model of the studied sub-basin differs from that which explain the coeval sedimentation of units situated in the western part of the SEAFB. Moreover, our model shows some depositional and paleoenvironmental similarities with Miocene evaporites located in the Mesopotamian Foreland Basin. This work provides valuable insights on the Middle Miocene Salinity Crisis which is related to the evolution of the Neotethys closure.

High Levels of Sediment Contamination Have Little Influence on Estuarine Beach Fish Communities

PubMed Central

McKinley, Andrew C.; Dafforn, Katherine A.; Taylor, Matthew D.; Johnston, Emma L.

2011-01-01

While contaminants are predicted to have measurable impacts on fish assemblages, studies have rarely assessed this potential in the context of natural variability in physico-chemical conditions within and between estuaries. We investigated links between the distribution of sediment contamination (metals and PAHs), physico-chemical variables (pH, salinity, temperature, turbidity) and beach fish assemblages in estuarine environments. Fish communities were sampled using a beach seine within the inner and outer zones of six estuaries that were either heavily modified or relatively unmodified by urbanization and industrial activity. All sampling was replicated over two years with two periods sampled each year. Shannon diversity, biomass and abundance were all significantly higher in the inner zone of estuaries while fish were larger on average in the outer zone. Strong differences in community composition were also detected between the inner and outer zones. Few differences were detected between fish assemblages in heavily modified versus relatively unmodified estuaries despite high concentrations of sediment contaminants in the inner zones of modified estuaries that exceeded recognized sediment quality guidelines. Trends in species distributions, community composition, abundance, Shannon diversity, and average fish weight were strongly correlated to physico-chemical variables and showed a weaker relationship to sediment metal contamination. Sediment PAH concentrations were not significantly related to the fish assemblage. These findings suggest that variation in some physico-chemical factors (salinity, temperature, pH) or variables that co-vary with these factors (e.g., wave activity or grain size) have a much greater influence on this fish assemblage than anthropogenic stressors such as contamination. PMID:22039470

Arsenic speciation in wild marine organisms and a health risk assessment in a subtropical bay of China.

PubMed

Zhang, Wei; Guo, Zhiqiang; Song, Dongdong; Du, Sen; Zhang, Li

2018-06-01

The total arsenic (As) and As species were analyzed in 19 species of wild marine organisms collected from 12 locations in Daya Bay, China; additionally, both the levels of As in the seawater and sediments and the salinity were investigated. The greatest level of As was found in crabs (13.4-35.1 μg/g), followed by shrimps (8.52-27.6 μg/g), benthic fish (3.45-28.6 μg/g), and pelagic fish (1.22-5.23 μg/g). There were significantly positive correlations between the As concentrations in the benthic fish Callionymus richardsonii/shrimp Metapenaeopsis palmensis and those in sediments, indicating that As levels in them were highly dependent on those in the sediments. Arsenobetaine (AsB) (87.3-99.8%) was the most dominant form of As found in all marine organisms. In benthic fish and shrimp, the bioaccumulation of As, especially AsB, was positively correlated with the salinity of the seawater, indicating that the salinity could control the transfer of As. The calculated hazard quotients (HQs) of the inorganic As in the marine organisms were all <1; thus, there was no apparent health hazard through the consumption of wild marine organisms. Copyright © 2018 Elsevier B.V. All rights reserved.

A diatom record of climate and hydrology for the past 200 KA from Owens Lake, California with comparison to other Breat Basin records

USGS Publications Warehouse

Bradbury, J.P.

1997-01-01

Diatoms from lake sediments beneath Owens Lake playa, Inyo County, California, document a nearly continuous paleolimnological record of climate and hydrologic change since the penultimate glacial-interglacial cycle based on a chronology established by radiocarbon, tephrochronology, and paleomagnetic control. Freshwater planktic diatoms (especially species of Stephanodiscus), plagioclase feldspar-rich sediments with high magnetic susceptibility, and Juniperus-type pollen characterized the penultimate glaciation at Owens Lake. Saline diatoms dominated in the following interglacial period, and there are several episodes during which freshwater planktic diatoms became abundant between 100 and 50 ka that may represent interstadial climatic conditions. Saline diatoms fell to low values after 50 ka, but warm-season Aulacoseira species indicate episodes of significant summer precipitation in the hydrologic balance of Owens Lake prior to the last glacial maximum. By 25 ka, glacial environments were again characterized by abundant Juniperus, plagioclase feldspar, and Stephanodiscus species. Generally and Holocene climates were recorded in Owens Lake by short-term fluctuations of saline and freshwater diatoms, desiccation, and oolitic sediments barren of diatoms. Comparison to paleoclimate records both north and south of Owens Lake suggest a southerly displacement of storm tracks originating from the Aleutian Low during glacial episodes.

The role of uplift and erosion in the persistence of saline groundwater in the shallow subsurface

NASA Astrophysics Data System (ADS)

Yager, R. M.; McCoy, K. J.; Voss, C. I.; Sanford, W. E.; Winston, R. B.

2017-04-01

In many regions of the world, the shallow (<300 m) subsurface is replenished with meteoric recharge within a few centuries or millennia, but in some regions saline groundwater persists despite abundant rainfall. Analyses of the flushing rate of shallow groundwater usually consider the permeability and recharge rate and a static landscape. The influence of landscape evolution can become important over millions of years, however. Here we present numerical simulations of fluid flow and transport in the top 1 km of a sedimentary foreland basin dominated by aquitards, where the rate of uplift and erosion (20 m Ma-1) balances that of meteoric flushing. Paleozoic age saline groundwater and brine persist at shallow depths that might otherwise have contained potable water. Similar hydrogeologic conditions, and uplift and erosion rates, likely exist in many other regions of the world, where a moving landscape has probably never been considered as an important contributor to groundwater quality.

The role of uplift and erosion in the persistence of saline groundwater in the shallow subsurface

USGS Publications Warehouse

Yager, Richard M.; McCoy, Kurt J.; Voss, Clifford I.; Sanford, Ward E.; Winston, Richard B.

2017-01-01

In many regions of the world, the shallow (<300 m) subsurface is replenished with meteoric recharge within a few centuries or millennia, but in some regions saline groundwater persists despite abundant rainfall. Analyses of the flushing rate of shallow groundwater usually consider the permeability and recharge rate and a static landscape. The influence of landscape evolution can become important over millions of years, however. Here we present numerical simulations of fluid flow and transport in the top 1 km of a sedimentary foreland basin dominated by aquitards, where the rate of uplift and erosion (20 m Ma−1) balances that of meteoric flushing. Paleozoic age saline groundwater and brine persist at shallow depths that might otherwise have contained potable water. Similar hydrogeologic conditions, and uplift and erosion rates, likely exist in many other regions of the world, where a moving landscape has probably never been considered as an important contributor to groundwater quality.

Adsorption-desorption of oxytetracycline on marine sediments: Kinetics and influencing factors.

PubMed

Li, Jia; Zhang, Hua

2016-12-01

To reveal the kinetics and mechanisms of antibiotic adsorption/desorption processes, batch and stirred flow chamber (SFC) experiments were carried out with oxytetracycline (OTC) on two marine sediments. The OTC adsorption capacities of the marine sediments were relatively weak and related to their organic carbon (OC) and contents of fine particles. Sorption isotherms of OTC on marine sediment can be well described by both the Langmuir and Freundlich models. Langmuir adsorption maxima (q max ) and Freundlich distribution coefficients (K f ) increased with the decrease of salinity and pH, which indicated the importance of variable charged sites on sediment surfaces. A second order kinetic model successfully described adsorption and desorption kinetics of OTC and well reproduced the concentration change during stop-flow. The adsorption kinetic rates (k a ) for OTC under different experimental conditions ranged from 2.00 × 10 -4 to 1.97 × 10 -3  L (mg min) -1 . Results of SFC experiments indicated that diffusive mass transfer was the dominant mechanism of the time-dependent adsorption of OTC and its release from marine sediment was mildly hysteretic. The high desorption percentage (43-75% for LZB and 58-75% for BHB) implied that binding strength of OTC on two marine sediments was weak. In conclusion, marine sediment characteristics and environmental factors such as salinity, pH, and flow rate are critical factors determine extent of OTC sorption on marine sediment and need to be incorporated in modeling fate and transport of OTC in marine environment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Microbial abundance in the deep subsurface of the Chesapeake Bay impact crater: Relationship to lithology and impact processes

USGS Publications Warehouse

Cockell, Charles S.; Gronstal, Aaron L.; Voytek, Mary A.; Kirshtein, Julie D.; Finster, Kai; Sanford, Ward E.; Glamoclija, Mihaela; Gohn, Gregroy S.; Powars, David S.; Horton, J. Wright

2009-01-01

Asteroid and comet impact events are known to cause profound disruption to surface ecosystems. The aseptic collection of samples throughout a 1.76-km-deep set of cores recovered from the deep subsurface of the Chesapeake Bay impact structure has allowed the study of the subsurface biosphere in a region disrupted by an impactor. Microbiological enumerations suggest the presence of three major microbiological zones. The upper zone (127–867 m) is characterized by a logarithmic decline in microbial abundance from the surface through the postimpact section of Miocene to Upper Eocene marine sediments and across the transition into the upper layers of the impact tsunami resurge sediments and sediment megablocks. In the middle zone (867–1397 m) microbial abundances are below detection. This zone is predominantly quartz sand, primarily composed of boulders and blocks, and it may have been mostly sterilized by the thermal pulse delivered during impact. No samples were collected from the large granite block (1096–1371 m). The lowest zone (below 1397 m) of increasing microbial abundance coincides with a region of heavily impact-fractured, hydraulically conductive suevite and fractured schist. These zones correspond to lithologies influenced by impact processes. Our results yield insights into the influence of impacts on the deep subsurface biosphere.

Experimental measurements of the SP response to concentration and temperature gradients in sandstones with application to subsurface geophysical monitoring

NASA Astrophysics Data System (ADS)

Leinov, E.; Jackson, M. D.

2014-09-01

Exclusion-diffusion potentials arising from temperature gradients are widely neglected in self-potential (SP) surveys, despite the ubiquitous presence of temperature gradients in subsurface settings such as volcanoes and hot springs, geothermal fields, and oil reservoirs during production via water or steam injection. Likewise, with the exception of borehole SP logging, exclusion-diffusion potentials arising from concentration gradients are also neglected or, at best, it is assumed that the diffusion potential dominates. To better interpret these SP sources requires well-constrained measurements of the various coupling terms. We report measurements of thermoelectric and electrochemical exclusion-diffusion potentials across sandstones saturated with NaCl brine and find that electrode effects can dominate the measured voltage. After correcting for these, we find that Hittorf transport numbers are the same within experimental error regardless of whether ion transport occurs in response to temperature or concentration gradients over the range of NaCl concentration investigated that is typical of natural systems. Diffusion potentials dominate only if the pore throat radius is more than approximately 4000 times larger than the diffuse layer thickness. In fine-grained sandstones with small pore throat diameter, this condition is likely to be met only if the saturating brine is of relatively high salinity; thus, in many cases of interest to earth scientists, exclusion-diffusion potentials will comprise significant contributions from both ionic diffusion through, and ionic exclusion from, the pore space of the rock. However, in coarse-grained sandstones, or sandstones saturated with high-salinity brine, exclusion-diffusion potentials can be described using end-member models in which ionic exclusion is neglected. Exclusion-diffusion potentials in sandstones depend upon pore size and salinity in a complex way: they may be positive, negative, or zero depending upon sandstone rock texture (expressed here by the pore radius r) and salinity.

Pore-water and epibenthic exposures in contaminated sediments using embryos of two estuarine fish species

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jelinski, J.A.; Anderson, S.L.

1995-12-31

The authors` objectives were to determine the feasibility of using embryos of two fish species, Menidia beryllina and Atherinops affinis, in estuarine sediment toxicity tests at ambient temperatures and salinities, and to compare pore-water and sediment water interface corer (SWIC) exposure techniques using these same species. The ultimate goal is to determine whether these pore-water and SWIC methods can be used in in situ exposure studies. Sediment samples were collected at both a reference and contaminated site at the Mare Island Naval Shipyard in San Francisco Bay. Pore-water testes were conducted using methods developed in the laboratory, and SWIC testsmore » were conducted using a modification of B. Anderson et al. Salinity and temperature tolerance experiments revealed that M. beryllina embryos can tolerate temperatures between 160 C and 240 C and salinities of 10 ppt to 25 ppt, whereas A. affinis has a temperature range between 160 C and 200 C. Comparisons between pore-water and SWIC exposures at a reference site within MINSY showed no significant difference in hatching success. However, hatching success in SWIC exposures was significantly lower than pore-water exposures at a previously characterized contaminated site. In conclusion, both M. beryllina and A. affinis embryos may be useful for sediment and in situ toxicity testing in estuarine environments. Their wide temperature and salinity tolerances allow for minimal test manipulations, and M. beryllina showed excellent hatching success in reference sediments for both types of exposures.« less

A Review of distribution and quantity of lingering subsurface oil from the Exxon Valdez Oil Spill

NASA Astrophysics Data System (ADS)

Nixon, Zachary; Michel, Jacqueline

2018-01-01

Remaining lingering subsurface oil residues from the Exxon Valdez oil spill (EVOS) are, at present, patchily distributed across the geologically complex and spatially extensive shorelines of Prince William Sound and the Gulf of Alaska. We review and synthesize previous literature describing the causal geomorphic and physical mechanisms for persistence of oil in the intertidal subsurface sediments of these areas. We also summarize previous sampling and modeling efforts, and refine previously presented models with additional data to characterize the present-day linear and areal spatial extent, and quantity of lingering subsurface oil. In the weeks after the spill in March of 1989, approximately 17,750 t of oil were stranded along impacted shorelines, and by October of 1992, only 2% of the mass of spilled oil was estimated to remain in intertidal areas. We estimate that lingering subsurface residues, generally between 5 and 20 cm thick and sequestered below 10-20 cm of clean sediment, are present over 30 ha of intertidal area, along 11.4 km of shoreline, and represent approximately 227 t or 0.6% of the total mass of spilled oil. These residues are typically located in finer-grained sand and gravel sediments, often under an armor of cobble- or boulder-sized clasts, in areas with limited groundwater flow and porosity. Persistence of these residues is correlated with heavy initial oil loading together with localized sheltering from physical disturbance such as wave energy within the beach face. While no longer generally bioavailable and increasingly chemically weathered, present removal rates for these remaining subsurface oil residues have slowed to nearly zero. The only remaining plausible removal mechanisms will operate over time scales of decades.

Characterization and Modeling of Settling, Consolidation, and Suspension to Optimize Sediment Retention of Sediment Diversions for Coastal Restoration

NASA Astrophysics Data System (ADS)

Sha, X.; Xu, K.; Bentley, S. J.; Robichaux, P.

2016-02-01

Although many studies of sediment diversions have been conducted on the Mississippi Delta, relatively less attention has been paid to understanding sediment retention and basic cohesive sedimentation processes in receiving basins. Our research evaluates long-term (up to six months) sedimentation processes through various laboratory experiments, especially cohesive sediment settling, consolidation and resuspension and their impacts on sediment retention. Bulk sediment samples were collected from West Bay, near Head of Passes of the Mississippi Delta, and the Big Mar basin that receive water and sediment from the Caernarvon Diversion in the upper Breton Sound region of Louisiana, USA. A-230-cm tall settling column with nine sampling ports at 15 cm intervals was used to measure the consolidation for four initial sediment concentrations (10-120 kg m-3) with two salinities (1 ppt & 5 ppt). Samples of sediment slurry were taken from every port at different time intervals up to 15 days or longer (higher concentration needs longer time to consolidate) to record concentrations gravimetrically. A 200 cm long tube was connected to a 50 cm long core chamber to accumulate at least a 10 cm thick sediment column for erosion tests. A dual-core Gust Erosion Microcosm System was employed to measure time-series (0.5, 1, 2, 3, 4, 5, 6 months) erodibility at seven shear stress regimes (0.01-0.60 Pa). Our preliminary results show a significant decrease of erodibility with time and high concentration (120g/L). Salinity impacted on sediment behavior in consolidation experiments. Our study reveals that more enclosed receiving basins, intermittent openings of diversions, or reduced shear stress due to man-made structure all can potentially reduce cohesive sediment erosion in coastal Louisiana. Further results will be analyzed to determine the model constants. Consolidating rates and corresponding erosional changes will be determined to optimize sediment retention in coastal protection.

Interplay of diverse environmental settings and their influence on the plankton community off Myanmar during the Spring Intermonsoon

NASA Astrophysics Data System (ADS)

Jyothibabu, R.; Win, Ni Ni; Shenoy, D. M.; Swe, U. Tint; Pratik, M.; Thwin, Swe; Jagadeesan, L.

2014-11-01

The northern Andaman Sea including the Myanmar waters is one of the least studied regions of the northern Indian Ocean. The freshwater and suspended sediments carried by Ayeyawady/Irrawaddy, the peculiar surface circulation, coastline morphology and shallow bathymetry in the Gulf of Mottama facilitate several diverse environmental settings in the study region. In order to understand the environmental settings and their linkages to the plankton community in the study region, this paper combined in situ data of 'First India-Myanmar Joint Oceanographic Expedition' with satellite oceanography observations. The study period was the Spring Intermonsoon (March-May), which was characterized by high tidal activity in the Gulf of Mottama region (tidal height 6-8 m) causing strong tidal currents and re-suspension of sediments. The tidal currents and eastward advection of Ayeyawady influx caused the lowest salinity, highest concentration of nutrients, suspended sediments and chlorophyll a in the Gulf of Mottama region. Conversely, high salinity, highest temperature, lowest nutrients and suspended sediments prevalent in the offshore waters of the northern Andaman Sea induced a massive bloom of Trichodesmium erythraeum, which was mostly in the declining phase during the observation. The in situ and satellite remote sensing data clearly showed that the T. erythraeum bloom observed in the offshore waters was closely linked to a warm core eddy. The decomposition of the bloom favored swarms of siphonophores and hydromedusae through a trophic link involving copepods and appendicularians. Aided by satellite remote sensing data and multivariate statistical tools, five diverse environmental settings have been identified in the study domain. The analysis showed a close coupling between phytoplankton biomass and nutrients with their higher values in the Gulf of Mottama, off Rakhine, Ayeyawady and Thanintharyi region as compared to the offshore waters in the northern Andaman Sea. The zooplankton community dominated by copepods and chaetognaths preferred regions with high salinity, chlorophyll, deep mixed layer and low suspended sediments as existed off Rakhine, Ayeyawady and Thanintharyi regions. The study evidences, for the first time, the spatial segregation of environmental settings and its linkages to the plankton community off Myanmar during the Spring Intermonsoon.

Deep subsurface drip irrigation using coal-bed sodic water: part II. geochemistry

USGS Publications Warehouse

Bern, Carleton R.; Breit, George N.; Healy, Richard W.; Zupancic, John W.

2013-01-01

Waters with low salinity and high sodium adsorption ratios (SARs) present a challenge to irrigation because they degrade soil structure and infiltration capacity. In the Powder River Basin of Wyoming, such low salinity (electrical conductivity, EC 2.1 mS cm-1) and high-SAR (54) waters are co-produced with coal-bed methane and some are used for subsurface drip irrigation(SDI). The SDI system studied mixes sulfuric acid with irrigation water and applies water year-round via drip tubing buried 92 cm deep. After six years of irrigation, SAR values between 0 and 30 cm depth (0.5-1.2) are only slightly increased over non-irrigated soils (0.1-0.5). Only 8-15% of added Na has accumulated above the drip tubing. Sodicity has increased in soil surrounding the drip tubing, and geochemical simulations show that two pathways can generate sodic conditions. In soil between 45-cm depth and the drip tubing, Na from the irrigation water accumulates as evapotranspiration concentrates solutes. SAR values >12, measured by 1:1 water-soil extracts, are caused by concentration of solutes by factors up to 13. Low-EC (-1) is caused by rain and snowmelt flushing the soil and displacing ions in soil solution. Soil below the drip tubing experiences lower solute concentration factors (1-1.65) due to excess irrigation water and also contains relatively abundant native gypsum (2.4 ± 1.7 wt.%). Geochemical simulations show gypsum dissolution decreases soil-water SAR to 14 and decreasing EC in soil water to 3.2 mS cm-1. Increased sodicity in the subsurface, rather than the surface, indicates that deep SDI can be a viable means of irrigating with sodic waters.

Non-Destructive X-ray Computed Tomography (XCT) of Gas Hydrate Bearing Fractures in Marine Sediment

NASA Astrophysics Data System (ADS)

Oti, E.; Buchwalter, E.; Cook, A.; Crandall, D.

2017-12-01

Hydrate-filled fractures are found in many environments, both related to methane vents and constrained to lithologic layers; how hydrate filled fractures form in layered environments is not well understood. We focus on understanding hydrate origins and fracture formation by examining hydrate-bearing fractures in conventional cores taken from Gulf of Mexico sites from JIP Leg 1 and UT-GOM, Keathley Canyon 151. There are two main methane sources available for hydrate formation. The first is the hydrocarbon reservoir underlying the Gulf sediments. This reservoir formed when deeply buried organic matter of high molecular weight was exposed to high temperature and pressures and degraded. A second source is the biogenesis of organic material, which occurs when microbial activity breaks down organic materials. Biogenic methane is more enriched in lighter carbon isotopes as the reduction or fermentation reactions preferentially consume lighter carbon isotopes. As a result, we hypothesize that sediment surrounding biogenically derived methane will have heavier carbon isotopes when compared to non-host sediment, due to the consumption of the lighter carbon isotopes during methanogenesis. We use non-destructive X-ray Computed Tomography (XCT) scanning to visualize and identify hydrate-bearing fractures. The presence of hydrate fractures is further confirmed with a salinity analysis, as hydrate dissociation freshens the pore water and lowers the salinity. After hydrate fracture location is inferred, carbon isotope analysis is used to identify hydrocarbon source. XCT scans of Keathley Canyon core JIP-1 17H-4 revealed 10 total fractures, five of which XCT and salinity analysis indicated as formerly containing hydrate. All ten fractures, in addition to background sediment, underwent a carbon isotope analysis in which organic isotopes were measured. In the background sediment and the non hydrate-bearing fractures, DOC values were relatively light, with dC13 percentages ranging from -27.8% to -30.8%. In the five hydrate fracture regions, DOC was comparatively heavy, with DOC dC13 values ranging from -23.2% to -30.3%. These values suggest that biogenic methane was formed adjacent to the fracture and likely migrated into the hydrate filled fracture.

Halophilic Archaea determined from geothermal steam vent aerosols.

PubMed

Ellis, Dean G; Bizzoco, Richard W; Kelley, Scott T

2008-06-01

Hydrothermal vents, known as 'fumaroles', are ubiquitous features of geothermal areas. Although their geology has been extensively characterized, little is known about the subsurface microbial ecology of fumaroles largely because of the difficulty in collecting sufficient numbers of cells from boiling steam water for DNA extraction and culture isolation. Here we describe the first collection, molecular analysis and isolation of microbes from fumarole steam waters in Russia (Kamchatka) and the USA (Hawaii, New Mexico, California and Wyoming). Surprisingly, the steam vent waters from all the fumaroles contained halophilic Archaea closely related to the Haloarcula spp. found in non-geothermal salt mats, saline soils, brine pools and salt lakes around the world. Microscopic cell counting estimated the cell dispersal rate at approximately 1.6 x 10(9) cells year(-1) from a single fumarole. We also managed to enrich microbes in high-salt media from every vent sample, and to isolate Haloarcula from a Yellowstone vent in a 20% salt medium after a month-long incubation, demonstrating both salt tolerance and viability of cells collected from high-temperature steam. Laboratory tests determined that microbes enriched in salt media survived temperatures greater than 75 degrees C for between 5 and 30 min during the collection process. Hawaiian fumaroles proved to contain the greatest diversity of halophilic Archaea with four new lineages that may belong to uncultured haloarchaeal genera. This high diversity may have resulted from the leaching of salts and minerals through the highly porous volcanic rock, creating a chemically complex saline subsurface.

Organic carbon sources across salinity gradients in Chilean Fjords: Reloncaví Fjord ( 41°S) and Southern Patagonian ice fields area ( 48°S)

NASA Astrophysics Data System (ADS)

Placencia, Juan; Llanos, Gustavo; Contreras, Sergio

2017-04-01

The organic matter preserved in marine sediments contains contributions of allochthonous and autochthonous and variable source inputs. Allochthonous sources are terrestrial erosion (including anthropogenic material) of relatively labile and refractory material, while autochthonous sources including marine phytoplankton. In order to establish the sources of the organic matter (allochthonous/autochthonous) and how organic carbon is distributed along a salinity gradient, on this study we examined of organic Carbon/Nitrogen molar ratios (C:N), isotopic composition (δ13C) and n-alkanes (n-C24 to n-C34) in surface sediments from two continuous systems: river-fjord-ocean in Northern Patagonia (41°S-43°S), and glacier-fjord-ocean in central Patagonia (47°S-50°S). The continental inner fjord areas are characterized with sediment enriched in allochthonous organic carbon and high C:N (8-12) and low δ13C values (-23‰ to -26‰). Towards the Pacific Ocean, low C:N (6-7) and high δ13C values (-20‰ to -22‰) suggest prevalent autochthonous marine sources. Estuarine waters with salinity between 2 psu and 30 psu were associated with high C:N and low δ13C values together with odd over even long-chain n-alkane predominance (n-C31, n-C29 and n-C27) in surface sediments. All geochemical proxies suggest a great contribution of terrigenous input by glacier origin rivers, mainly from terrestrial plants in both areas. Our study provides a framework to guide future researches on environmental and climate change on these systems. This study was supported by the Chilean Navy's Hydrographic and Oceanographic Service, the Chilean National Oceanographic Committee through the Grants CONA C19F1308 and C20F1404, and the Research Office at Universidad Católica de la Ssma. Concepción.

Applications of electrical resistivity imaging for characterizing groundwater-surface water interactions from local to regional scales

NASA Astrophysics Data System (ADS)

Cardenas, M. B.; Befus, K. M.; Zamora, P. B.; Ong, J.; Zlotnik, V. A.; Cook, P. L.; Tait, D. R.; Erler, D.; Santos, I. R.; Siringan, F. P.

2012-12-01

Surface water (SW) and groundwater (GW) interact across multiple spatial and temporal scales and their interaction is important for ecological and biogeochemical functions. The mixing of GW and SW has been challenging to simultaneously map with sufficient detail and coverage. Fortunately, ambient differences in salinity of waters occupying geologic formations and sediment are an ideal target for electrical resistivity imaging (ERI). We present examples of the application of ERI for mapping GW discharge and for understanding GW-SW interactions at: (1) a large regulated river, (2) neighboring lakes with differing salinity, (3) fringing coral reefs and lagoons, (4) beaches, and (5) estuaries. In all these cases, the ER tomograms were critical for improving conceptual understanding of GW-SW interactions. At the Lower Colorado River in Austin, Texas (USA), time-lapse ERI was conducted across a 12-hour dam-release cycle when the river stage varied by 0.7 m. Using temporal variability in electrical resistivity (ER) signatures, we identified a shallow well-flushed hyporheic zone, a transition zone where SW and GW mix, and a stable deep zone hosting only GW. In alkaline lakes in the Nebraska Sand Hills (Nebraska, USA), ER surveys using boat-towed cables allowed for mapping the 3D electrical structure underneath the lake. The tomograms were used to distinguish flow-through lakes, which have decreasing subsurface ER from GW inflow to outflow area, from pure GW discharge lakes, which have uniformly stratified increasing-with-depth ER profiles. Moreover, GW plumes in both discharge and recharge zones were clearly outlined underneath the lake. More than 30 km of ER profiles collected via boat-towed surveys over a fringing coral reef in the Philippines identified areas of high ER within the reef that coincide with resistive zones in the seawater. Analysis of 222Rn of bottom waters and vertical conductivity-temperature-depth measurements show the persistence of fresh GW input into the ocean where low salinity and high 222Rn areas coincided with high ER areas. In Muri Lagoon in Rarotonga Island of the Cook Islands, boat-towed ER surveys similarly showed areas underneath the lagoon that have groundwater that is fresher than seawater. Likewise, there was 222Rn high concentrations throughout the lagoon. Closer to shore, ER surveys using fixed electrodes showed complex 3D mixing processes between seawater and terrestrial-sourced fresh groundwater in beach sediment. Lastly, both boat-towed and fixed surveys across the salt wedge of Werribee Estuary west of Melbourne, Australia, outlined the estuarine salt wedge and its relationship with and effect on fresh and nutrient-laden groundwater discharging to the estuary. The examples discussed illustrate that ERI is a powerful and convenient tool for mapping GW discharge and GW-SW interactions across different scales and diverse environments.

Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

NASA Astrophysics Data System (ADS)

Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

2015-12-01

IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are known thermophiles. Up until now, thermophiles and hyperthermophiles have been studied in cultured hydrothermal vent fluid samples, or have been identified from 16S rRNA taxonomic analyses. These recovered genes provide direct evidence for a pervasive subsurface hyperthermophilic biosphere in off-axis hydrothermal sediments.

Tillage impact on herbicide loss by surface runoff and lateral subsurface flow

USDA-ARS?s Scientific Manuscript database

There is worldwide interest in conservation tillage practices because they can reduce surface runoff, agrichemical, and sediment loss from farm fields. Since these practices typically increase infiltration, their use may increase subsurface transport of water-soluble contaminants. Thus, to assess lo...

SORPTION OF NONIONIC SURFACTANT OLIGOMERS TO SEDIMENT AND PCE DNAPL: EFFECTS ON PCE DISTRIBUTION BETWEEN WATER AND SEDIMENT. (R826650)

EPA Science Inventory

Introduction of surfactant mixtures to the subsurface for the purpose of
surfactant-enhanced aquifer remediation requires consideration of the effects of
surfactant sorption to sediment and nonaqueous phase liquids. These effects
include alteration of the solubiliz...

Impacts of flamingos on saline lake margin and shallow lacustrine sediments in the Kenya Rift Valley

NASA Astrophysics Data System (ADS)

Scott, Jennifer J.; Renaut, Robin W.; Owen, R. Bernhart

2012-11-01

Studies of modern, Holocene, and Pleistocene sediments around saline to hypersaline, alkaline Lake Bogoria and Lake Magadi show that evidence of flamingo activity in marginal areas of these lakes is nearly ubiquitous. Flamingos produce discrete structures such as webbed footprints (~ 9 cm long, ~ 11 cm wide) and nest mounds (~ 30 cm wide, ~ 20 cm high), and they also extensively rework sediments in delta front, delta plain, and shoreline areas. Large (~ 0.5-2 cm in diameter), pinched, 'bubble pores' and ped-like mud clumps are formed by the trampling and churning of wet clay-rich sediments in these settings. Flamingo nest mounds, although superficially similar to some thrombolite mounds, are typically internally structureless, unless formed on pre-existing sediments that preserve internal structures. The flamingo mounds consist of a dense, packed oval-shaped core, a surrounding 'body' of packed sediment, and an external layer with a ped-like texture of clumped mud. The nests may contain open holes from roots or feather shafts incorporated into the nest, and (or) burrows produced once the nests are abandoned. In areas with high densities of flamingos, lake margin sediments may be preferentially compacted, particularly at breeding sites, and become resistant to subaerial erosion and the effects of transgressive ravinement on time scales ranging from seasons to tens of thousands of years. The relatively well-compacted nest mounds and associated sediments also contribute to the stability of delta distributary channels during regressive-transgressive cycles, and can lead to the minor channelization of unconfined flows where currents are diverted around nest mounds. Pleistocene exhumed surfaces of relatively well-indurated lake margin sediments at Lake Bogoria and Lake Magadi that are interpreted as combined regressive and transgressive surfaces (flooding surface/sequence boundary) preserve evidence of flamingo activities, and are overlain by younger, porous lacustrine silts that preserve large bubble pores produced by flamingos.

Diversity and Distribution Characteristics of Viruses in Soils of a Marine-Terrestrial Ecotone in East China.

PubMed

Yu, Dan-Ting; Han, Li-Li; Zhang, Li-Mei; He, Ji-Zheng

2018-02-01

A substantial gap remains in our understanding of the abundance, diversity, and ecology of viruses in soil although some advances have been achieved in recent years. In this study, four soil samples according to the salinity gradient from shore to inland in East China have been characterized. Results showed that spherical virus particles represented the largest viral component in all of the four samples. The viromes had remarkably different taxonomic compositions, and most of the sequences were derived from single-stranded DNA viruses, especially from families Microviridae and Circoviridae. Compared with viromes from other aquatic and sediment samples, the community compositions of our four soil viromes resembled each other, meanwhile coastal sample virome closely congregated with sediment and hypersaline viromes, and high salinity paddy soil sample virome was similar with surface sediment virome. Phylogenetic analysis of functional genes showed that four viromes have high diversity of the subfamily Gokushovirinae in family Microviridae and most of Circoviridae replicase protein sequences grouped within the CRESS-DNA viruses. This work provided an initial outline of the viral communities in marine-terrestrial ecotone and will improve our understanding of the ecological functions of soil viruses.

Microbial communities and their predicted metabolic functions in a desiccating acid salt lake.

PubMed

Zaikova, Elena; Benison, Kathleen C; Mormile, Melanie R; Johnson, Sarah Stewart

2018-05-01

The waters of Lake Magic in Western Australia are among the most geochemically extreme on Earth. This ephemeral saline lake is characterized by pH as low as 1.6 salinity as high as 32% total dissolved solids, and unusually complex geochemistry, including extremely high concentrations of aluminum, silica, and iron. We examined the microbial composition and putative function in this extreme acid brine environment by analyzing lake water, groundwater, and sediment samples collected during the austral summer near peak evapoconcentration. Our results reveal that the lake water metagenome, surprisingly, was comprised of mostly eukaryote sequences, particularly fungi and to a lesser extent, green algae. Groundwater and sediment samples were dominated by acidophilic Firmicutes, with eukaryotic community members only detected at low abundances. The lake water bacterial community was less diverse than that in groundwater and sediment, and was overwhelmingly represented by a single OTU affiliated with Salinisphaera. Pathways associated with halotolerance were found in the metagenomes, as were genes associated with biosynthesis of protective carotenoids. During periods of complete desiccation of the lake, we hypothesize that dormancy and entrapment in fluid inclusions in halite crystals may increase long-term survival, leading to the resilience of complex eukaryotes in this extreme environment.

Chemical quality of surface waters and sedimentation in the Saline River basin, Kansas

USGS Publications Warehouse

Jordan, Paul Robert; Jones, B.F.; Petri, Lester R.

1964-01-01

This report gives the results of an investigation of the sediment and dissolved minerals that are transported by the Saline River and its tributaries. The Saline River basin is in western and central Kansas; it is long and narrow and covers 3,420 square miles of rolling plains, which is broken in some places by escarpments and small areas of badlands. In the western part the uppermost bedrock consists predominantly of calcareous elastic sedimentary rocks of continental origin of Pliocene age and in most places is covered by eolian deposits of Pleistocene and Recent age. In the central part the ex posed bedrock consists predominantly of calcareous marine sedimentary rocks of Late Cretaceous age. In the eastern part the exposed bedrock consists mainly of noncalcareous continental and littoral elastic sedimentary rocks of Early Cretaceous and Permian age. Fluvial deposits are in the valleys, and eolian materials are present over much of the uplands. Average precipitation increases rather uniformly from about 18 inches per year in the west to almost 28 inches per year in the east. Runoff is not affected by irrigation nor regulated by large structures, but it is closely related to precipitation. Average runoff increases from less than 0.2 inch per year in the west to more than 1.5 inches per year in the east. Aquifers of the flood-plain and terrace deposits and of the Cretaceous Dakota Sandstone are the major sources of ground-water accretion to the streams. In the upper reaches of the Saline River, the water is only slightly mineralized; during the period of record the specific conductance near Wakeeney never exceeded 750 micromhos per centimeter. In the lower reaches, however, the water is slightly mineralized during periods of high flow and is highly mineralized during periods of low flow; the specific conductance near Russell exceeded 1,500 micromhos per centimeter more than 80 percent of the time. Near Russell, near Wilson, and at Tescott the water is of the calcium bicarbonate type when the specific conductance is less than about 1,000 micromhos per centimeter, but it is of the sodium chloride type when the specific conductance is more than about 1,500 micromhos per centimeter. The water is off the calcium bicarbonate, sodium bicarbonate, or sodium chloride type when the conductance is between 1,000 and 1,500 micromhos per centimeter. Most of the increase in mineralization of the water is caused by inflow of highly mineralized ground water. The ground-water inflow was estimated to be 22 percent of the total streamflow at Tescott in 1948 and 60 percent in 1952. Mineralization increases and water quality deteriorates progressively downstream along nearly the entire Saline River, especially in the part of the area directly underlain by the Dakota Sandstone between the vicinities of Fairport and Wilson: sodium and chloride are the principal constituents of water contributed by the Dakota. The total percentage of the salt in the Saline River that comes from oil-field brines is considered to be small. The water in the upper Saline River is of good quality for domestic use except that it is hard; the water in the lower Saline River is of poor quality for domestic use because most of the time it is highly mineralized, is hard, and contains high concentrations of chloride and sulfate. In the upper reaches of the river, the water is of good quality for irrigation. In the lower reaches, if the water were impounded in a reservoir, it would be of good quality for irrigation during years of high flow and of very poor quality during years of low flow. The water in the lower reaches is of poor quality for industrial use because it is highly mineralized most of the tinge. Relations of suspended-sediment discharge to water discharge were used with the long-term streamflow duration curves to compute the long-term aver age suspended-sediment discharges and concentrations at five indications. Sediment discharge is closely related to runoff. S

30 CFR 250.906 - What must I do to obtain approval for the proposed site of my platform?

Code of Federal Regulations, 2010 CFR

2010-07-01

... seafloor sediments. (b) Geologic surveys. You must perform a geological survey relevant to the design and... seafloor subsidence. (c) Subsurface surveys. Depending upon the design and location of your proposed... proposed site of my platform? (a) Shallow hazards surveys. You must perform a high-resolution or acoustic...

Salinity shapes microbial diversity and community structure in surface sediments of the Qinghai-Tibetan Lakes.

PubMed

Yang, Jian; Ma, Li'an; Jiang, Hongchen; Wu, Geng; Dong, Hailiang

2016-04-26

Investigating microbial response to environmental variables is of great importance for understanding of microbial acclimatization and evolution in natural environments. However, little is known about how microbial communities responded to environmental factors (e.g. salinity, geographic distance) in lake surface sediments of the Qinghai-Tibetan Plateau (QTP). In this study, microbial diversity and community structure in the surface sediments of nine lakes on the QTP were investigated by using the Illumina Miseq sequencing technique and the resulting microbial data were statistically analyzed in combination with environmental variables. The results showed total microbial community of the studied lakes was significantly correlated (r = 0.631, P < 0.001) with lake salinity instead of geographic distance. This suggests that lake salinity is more important than geographic distance in shaping the microbial diversity and community structure in the studied samples. In addition, the abundant and rare taxa (OTUs with relative abundance higher than 1% and lower than 0.01% within one sample, respectively) were significantly (P < 0.05) correlated (r = 0.427 and 0.783, respectively) with salinity, suggesting rare taxa might be more sensitive to salinity than their abundant counterparts, thus cautions should be taken in future when evaluating microbial response (abundant vs. rare sub-communities) to environmental conditions.

Electrokinetic Transduction of Acoustic Waves In Ocean Sediments

DTIC Science & Technology

2002-09-30

acoustic —motion in ocean sediments. The Biot theory of poroelastic media captures much of the sediment physics left out by other models [2]. It fits...in subsurface acoustical imaging, Mine Counter- Measures, and Anti-Submarine Warfare. To obtain essential experimental data to support the modeling ...Electrokinetic Transduction of Acoustic Waves In Ocean Sediments Gareth I. Block Applied Research Laboratories, U.T. Austin P.O. Box 8029

Geophysical Assessment of the Control of a Jetty on a Barrier Beach and Estuary System

NASA Astrophysics Data System (ADS)

Ulrich, C.; Hubbard, S. S.; Peterson, J.; Blom, K.; Black, W.; Delaney, C.; Mendoza, J.

2014-12-01

An evaluation is underway at the Goat Rock State Park, located at the mouth of the Russian River near Jenner, CA, to quantify the influence of a man made jetty on the functioning of a barrier beach and associated implications for estuary fish habitat and flood control. Flow through the beach results from water level differences between the estuary and the ocean. When the estuary is closed or perched, one of the major sources of outflow from the lagoon is seepage flow through the barrier beach. The location and design of the jetty could be altering subsurface flow paths through the jetty and possibly impeding subsurface flow where the jetty is still intact. This will result in unnatural connectivity between the ocean and the estuary leading to atypical surface water elevations and possibly salinity imbalance. We are monitoring seepage through the jetty and beach berm with multiple surface and borehole geophysical methods, including: electrical resistivity (ERT), seismic refraction (SR), ground penetrating radar (GPR), and electromagnetic methods (EM). We use SR data to characterize deeper bedrock controls on beach barrier functioning; ERT and EM methods to characterize the beach sediment layers that could contribute to preferential flow paths during tide cycles in addition to preferential flow paths created by the jetty structure; time-lapse ERT and EM data to monitor moisture changes and mixing of saline and fresh water within the beach berm, and borehole ERT and GPR data to delineate the geometry of the (often buried) jetty. Preliminary ERT and EM results indicate two preferential flow paths through zones of missing jetty structure, while time-lapse borehole ERT data is expected to image saltwater flow impedance in zones of intact jetty structure. All data are being integrated with topography, tidal, borehole, and hydrological information and the results of the assessment will enable the Sonoma County Water Agency to develop the feasibility of alternatives to the existing jetty that may help achieve target estuarine water surface elevations.

Immobilization of U(VI) from Oxic Groundwater by Hanford 300 Area Sediments and Effects of Columbia River Water

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, Bin; Mishra, Bhoopesh

2012-09-23

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of:more » 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (~7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (~93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site.« less

Stability of Gas Hydrates on Continental Margins: Implications of Subsurface Fluid Flow

NASA Astrophysics Data System (ADS)

Nunn, J. A.

2008-12-01

Gas hydrates are found at or just below the sediment-ocean interface in continental margins settings throughout the world. They are also found on land in high latitude regions such as the north slope of Alaska. While gas hydrate occurrence is common, gas hydrates are stable under a fairly restricted range of temperatures and pressures. In a purely conductive thermal regime, near surface temperatures depend on basal heat flow, thermal conductivity of sediments, and temperature at the sediment-water or sediment-air interface. Thermal conductivity depends on porosity and sediment composition. Gas hydrates are most stable in areas of low heat flow and high thermal conductivity which produce low temperature gradients. Older margins with thin continental crust and coarse grained sediments would tend to be colder. Another potentially important control on subsurface temperatures is advective heat transport by recharge/discharge of groundwater. Upward fluid flow depresses temperature gradients over a purely conductive regime with the same heat flow which would make gas hydrates more stable. Downward fluid flow would have the opposite effect. However, regional scale fluid flow may substantially increase heat flow in discharge areas which would destabilize gas hydrates. For example, discharge of topographically driven groundwater along the coast in the Central North Slope of Alaska has increased surface heat flow in some areas by more than 50% over a purely conductive thermal regime. Fluid flow also alters the pressure regime which can affect gas hydrate stability. Modeling results suggest a positive feedback between gas hydrate formation/disassociation and fluid flow. Disassociation of gas hydrates or permafrost due to global warming could increase permeability. This could enhance fluid flow and associated heat transport causing a more rapid and/or more spatially extensive gas hydrate disassociation than predicted solely from conductive propagation of temporal changes in surface or water bottom temperature. Model results from both the North Slope of Alaska and the Gulf of Mexico are compared.

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

USGS Publications Warehouse

Krumholz, Lee R.; Elias, Dwayne A.; Suflita, Joseph M.

2003-01-01

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Use of constructed wetland systems with Arundo and Sarcocornia for polishing high salinity tannery wastewater.

PubMed

Calheiros, Cristina S C; Quitério, Paula V B; Silva, Gabriela; Crispim, Luís F C; Brix, Hans; Moura, Sandra C; Castro, Paula M L

2012-03-01

Treatment of tannery wastewater is problematic due to high and variable concentrations of complex pollutants often combined with high salinity levels. Two series of horizontal subsurface flow constructed wetlands (CWs) planted with Arundo donax and Sarcocornia fruticosa were set up after a conventional biological treatment system operating at a tannery site. The aim of the CWs was polishing organics and nitrogen from the high salinity effluent (2.2-6.6 g Cl(-) L(-1)). Both plant species established and grew well in the CW. Arundo, however, had more vigorous growth and a higher capacity to take up nutrients. The CWs were efficient in removing COD and BOD(5) with removal efficiencies varying between 51 and 80% for COD (inlet: 68-425 mg L(-1)) and between 53 and 90% for BOD(5) (inlet: 16-220 mg L(-1)). Mass removal rates were up to 615 kg COD ha(-1) d(-1) and 363 BOD(5) kg ha(-1) d(-1). Removal efficiencies were 40-93% for total P, 31-89% for NH(4)(+) and 41-90% for Total Kjeldahl Nitrogen. CW systems planted with salt tolerant plant species are a promising solution for polishing saline secondary effluent from the tannery industry to levels fulfilling the discharge standards. Copyright © 2011 Elsevier Ltd. All rights reserved.

Bathymetric controls on sediment transport in the Hudson River estuary: Lateral asymmetry and frontal trapping

USGS Publications Warehouse

Ralston, David K.; Geyer, W. Rockwell; Warner, John C.

2012-01-01

Analyses of field observations and numerical model results have identified that sediment transport in the Hudson River estuary is laterally segregated between channel and shoals, features frontal trapping at multiple locations along the estuary, and varies significantly over the spring-neap tidal cycle. Lateral gradients in depth, and therefore baroclinic pressure gradient and stratification, control the lateral distribution of sediment transport. Within the saline estuary, sediment fluxes are strongly landward in the channel and seaward on the shoals. At multiple locations, bottom salinity fronts form at bathymetric transitions in width or depth. Sediment convergences near the fronts create local maxima in suspended-sediment concentration and deposition, providing a general mechanism for creation of secondary estuarine turbidity maxima at bathymetric transitions. The lateral bathymetry also affects the spring-neap cycle of sediment suspension and deposition. In regions with broad, shallow shoals, the shoals are erosional and the channel is depositional during neap tides, with the opposite pattern during spring tides. Narrower, deeper shoals are depositional during neaps and erosional during springs. In each case, the lateral transfer is from regions of higher to lower bed stress, and depends on the elevation of the pycnocline relative to the bed. Collectively, the results indicate that lateral and along-channel gradients in bathymetry and thus stratification, bed stress, and sediment flux lead to an unsteady, heterogeneous distribution of sediment transport and trapping along the estuary rather than trapping solely at a turbidity maximum at the limit of the salinity intrusion.

The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions

PubMed Central

Bukin, Sergei V.; Pavlova, Olga N.; Manakov, Andrei Y.; Kostyreva, Elena A.; Chernitsyna, Svetlana M.; Mamaeva, Elena V.; Pogodaeva, Tatyana V.; Zemskaya, Tamara I.

2016-01-01

The ability to compare the composition and metabolic potential of microbial communities inhabiting the subsurface sediment in geographically distinct locations is one of the keys to understanding the evolution and function of the subsurface biosphere. Prospective areas for study of the subsurface biosphere are the sites of hydrocarbon discharges on the bottom of the Lake Baikal rift, where ascending fluxes of gas-saturated fluids and oil from deep layers of bottom sediments seep into near-surface sediment. The samples of surface sediments collected in the area of the Posolskaya Bank methane seep were cultured for 17 months under thermobaric conditions (80°C, 5 MPa) with the addition of complementary organic substrate, and a different composition for the gas phase. After incubation, the presence of intact cells of microorganisms, organic matter transformation and the formation of oil biomarkers was confirmed in the samples, with the addition of Baikal diatom alga Synedra acus detritus, and gas mixture CH4:H2:CO2. Taxonomic assignment of the 16S rRNA sequence data indicates that the predominant sequences in the enrichment were Sphingomonas (55.3%), Solirubrobacter (27.5%) and Arthrobacter (16.6%). At the same time, in heat-killed sediment and in sediment without any additional substrates, which were cultivated in a CH4 atmosphere, no geochemical changes were detected, nor the presence of intact cells and 16S rRNA sequences of Bacteria and Archaea. This data may suggest that the decomposition of organic matter under culturing conditions could be performed by microorganisms from low-temperature sediment layers. One possible explanation of this phenomenon is migration of the representatives of the deep thermophilic community through fault zones in the near surface sediment layers, together with gas-bearing fluids. PMID:27242716

The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions.

PubMed

Bukin, Sergei V; Pavlova, Olga N; Manakov, Andrei Y; Kostyreva, Elena A; Chernitsyna, Svetlana M; Mamaeva, Elena V; Pogodaeva, Tatyana V; Zemskaya, Tamara I

2016-01-01

The ability to compare the composition and metabolic potential of microbial communities inhabiting the subsurface sediment in geographically distinct locations is one of the keys to understanding the evolution and function of the subsurface biosphere. Prospective areas for study of the subsurface biosphere are the sites of hydrocarbon discharges on the bottom of the Lake Baikal rift, where ascending fluxes of gas-saturated fluids and oil from deep layers of bottom sediments seep into near-surface sediment. The samples of surface sediments collected in the area of the Posolskaya Bank methane seep were cultured for 17 months under thermobaric conditions (80°C, 5 MPa) with the addition of complementary organic substrate, and a different composition for the gas phase. After incubation, the presence of intact cells of microorganisms, organic matter transformation and the formation of oil biomarkers was confirmed in the samples, with the addition of Baikal diatom alga Synedra acus detritus, and gas mixture CH4:H2:CO2. Taxonomic assignment of the 16S rRNA sequence data indicates that the predominant sequences in the enrichment were Sphingomonas (55.3%), Solirubrobacter (27.5%) and Arthrobacter (16.6%). At the same time, in heat-killed sediment and in sediment without any additional substrates, which were cultivated in a CH4 atmosphere, no geochemical changes were detected, nor the presence of intact cells and 16S rRNA sequences of Bacteria and Archaea. This data may suggest that the decomposition of organic matter under culturing conditions could be performed by microorganisms from low-temperature sediment layers. One possible explanation of this phenomenon is migration of the representatives of the deep thermophilic community through fault zones in the near surface sediment layers, together with gas-bearing fluids.

Subsurface Nitrogen-Cycling Microbial Communities at Uranium Contaminated Sites in the Colorado River Basin

NASA Astrophysics Data System (ADS)

Cardarelli, E.; Bargar, J.; Williams, K. H.; Dam, W. L.; Francis, C.

2015-12-01

Throughout the Colorado River Basin (CRB), uranium (U) persists as a relic contaminant of former ore processing activities. Elevated solid-phase U levels exist in fine-grained, naturally-reduced zone (NRZ) sediments intermittently found within the subsurface floodplain alluvium of the following Department of Energy-Legacy Management sites: Rifle, CO; Naturita, CO; and Grand Junction, CO. Coupled with groundwater fluctuations that alter the subsurface redox conditions, previous evidence from Rifle, CO suggests this resupply of U may be controlled by microbially-produced nitrite and nitrate. Nitrification, the two-step process of archaeal and bacterial ammonia-oxidation followed by bacterial nitrite oxidation, generates nitrate under oxic conditions. Our hypothesis is that when elevated groundwater levels recede and the subsurface system becomes anoxic, the nitrate diffuses into the reduced interiors of the NRZ and stimulates denitrification, the stepwise anaerobic reduction of nitrate/nitrite to dinitrogen gas. Denitrification may then be coupled to the oxidation of sediment-bound U(IV) forming mobile U(VI), allowing it to resupply U into local groundwater supplies. A key step in substantiating this hypothesis is to demonstrate the presence of nitrogen-cycling organisms in U-contaminated, NRZ sediments from the upper CRB. Here we investigate how the diversity and abundances of nitrifying and denitrifying microbial populations change throughout the NRZs of the subsurface by using functional gene markers for ammonia-oxidation (amoA, encoding the α-subunit of ammonia monooxygenase) and denitrification (nirK, nirS, encoding nitrite reductase). Microbial diversity has been assessed via clone libraries, while abundances have been determined through quantitative polymerase chain reaction (qPCR), elucidating how relative numbers of nitrifiers (amoA) and denitrifiers (nirK, nirS) vary with depth, vary with location, and relate to uranium release within NRZs in sediment cores spanning the upper CRB. Early findings from Rifle, CO indicate elevated abundances of ammonia-oxidizers seem to correlate with elevated uranium concentrations emphasizing the critical need to understand how nitrogen-cycling organisms influence subsurface U redox chemistry and mobility.

Impact of glider data assimilation on the Monterey Bay model

NASA Astrophysics Data System (ADS)

Shulman, Igor; Rowley, Clark; Anderson, Stephanie; DeRada, Sergio; Kindle, John; Martin, Paul; Doyle, James; Cummings, James; Ramp, Steve; Chavez, Francisco; Fratantoni, David; Davis, Russ

2009-02-01

Glider observations were essential components of the observational program in the Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay area during summer of 2003. This paper is focused on the impact of the assimilation of glider temperature and salinity observations on the Navy Coastal Ocean Model (NCOM) predictions of surface and subsurface properties. The modeling system consists of an implementation of the NCOM model using a curvilinear, orthogonal grid with 1-4 km resolution, with finest resolution around the bay. The model receives open boundary conditions from a regional (9 km resolution) NCOM implementation for the California Current System, and surface fluxes from the Coupled Ocean-Atmosphere Mesoscale Prediction System (COAMPS) atmospheric model at 3 km resolution. The data assimilation component of the system is a version of the Navy Coupled Ocean Data Assimilation (NCODA) system, which is used for assimilation of the glider data into the NCOM model of the Monterey Bay area. The NCODA is a fully 3D multivariate optimum interpolation system that produces simultaneous analyses of temperature, salinity, geopotential, and vector velocity. Assimilation of glider data improves the surface temperature at the mooring locations for the NCOM model hindcast and nowcasts, and for the short-range (1-1.5 days) forecasts. It is shown that it is critical to have accurate atmospheric forcing for more extended forecasts. Assimilation of glider data provided better agreement with independent observations (for example, with aircraft measured SSTs) of the model-predicted and observed spatial distributions of surface temperature and salinity. Mooring observations of subsurface temperature and salinity show sharp changes in the thermocline and halocline depths during transitions from upwelling to relaxation and vice versa. The non-assimilative run also shows these transitions in subsurface temperature; but they are not as well defined. For salinity, the non-assimilative run significantly differs from the observations. However, the glider data assimilating run is able to show comparable results with observations of thermocline as well as halocline depths during upwelling and relaxation events in the Monterey Bay area. It is also shown that during the relaxation of wind, the data assimilative run has higher value of subsurface velocity complex correlation with observations than the non-assimilative run.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

USGS Publications Warehouse

Holmes, Dawn E.; O'Neil, Regina A.; Vrionis, Helen A.; N'Guessan, Lucie A.; Ortiz-Bernad, Irene; Larrahondo, Maria J.; Adams, Lorrie A.; Ward, Joy A.; Nicoll , Julie S.; Nevin, Kelly P.; Chavan, Milind A.; Johnson, Jessica P.; Long, Philip E.; Lovely, Derek R.

2007-01-01

There are distinct differences in the physiology of Geobacter species available in pure culture. Therefore, to understand the ecology of Geobacter species in subsurface environments, it is important to know which species predominate. Clone libraries were assembled with 16S rRNA genes and transcripts amplified from three subsurface environments in which Geobacter species are known to be important members of the microbial community: (1) a uranium-contaminated aquifer located in Rifle, CO, USA undergoing in situ bioremediation; (2) an acetate-impacted aquifer that serves as an analog for the long-term acetate amendments proposed for in situ uranium bioremediation and (3) a petroleum-contaminated aquifer in which Geobacter species play a role in the oxidation of aromatic hydrocarbons coupled with the reduction of Fe(III). The majority of Geobacteraceae 16S rRNA sequences found in these environments clustered in a phylogenetically coherent subsurface clade, which also contains a number of Geobacter species isolated from subsurface environments. Concatamers constructed with 43 Geobacter genes amplified from these sites also clustered within this subsurface clade. 16S rRNA transcript and gene sequences in the sediments and groundwater at the Rifle site were highly similar, suggesting that sampling groundwater via monitoring wells can recover the most active Geobacter species. These results suggest that further study of Geobacter species in the subsurface clade is necessary to accurately model the behavior of Geobacter species during subsurface bioremediation of metal and organic contaminants.

Microbial diversity in ultra-high-pressure rocks and fluids from the Chinese Continental Scientific Drilling Project in China.

PubMed

Zhang, Gengxin; Dong, Hailiang; Xu, Zhiqin; Zhao, Donggao; Zhang, Chuanlun

2005-06-01

Microbial communities in ultra-high-pressure (UHP) rocks and drilling fluids from the Chinese Continental Scientific Drilling Project were characterized. The rocks had a porosity of 1 to 3.5% and a permeability of approximately 0.5 mDarcy. Abundant fluid and gas inclusions were present in the minerals. The rocks contained significant amounts of Fe2O3, FeO, P2O5, and nitrate (3 to 16 ppm). Acridine orange direct counting and phospholipid fatty acid analysis indicated that the total counts in the rocks and the fluids were 5.2 x 10(3) to 2.4 x 10(4) cells/g and 3.5 x 10(8) to 4.2 x 10(9) cells/g, respectively. Enrichment assays resulted in successful growth of thermophilic and alkaliphilic bacteria from the fluids, and some of these bacteria reduced Fe(III) to magnetite. 16S rRNA gene analyses indicated that the rocks were dominated by sequences similar to sequences of Proteobacteria and that most organisms were related to nitrate reducers from a saline, alkaline, cold habitat; however, some phylotypes were either members of a novel lineage or closely related to uncultured clones. The bacterial communities in the fluids were more diverse and included Proteobacteria, Bacteroidetes, gram-positive bacteria, Planctomycetes, and Candidatus taxa. The archaeal diversity was lower, and most sequences were not related to any known cultivated species. Some archaeal sequences were 90 to 95% similar to sequences recovered from ocean sediments or other subsurface environments. Some archaeal sequences from the drilling fluids were >93% similar to sequences of Sulfolobus solfataricus, and the thermophilic nature was consistent with the in situ temperature. We inferred that the microbes in the UHP rocks reside in fluid and gas inclusions, whereas those in the drilling fluids may be derived from subsurface fluids.

Microbial Diversity in Ultra-High-Pressure Rocks and Fluids from the Chinese Continental Scientific Drilling Project in China

PubMed Central

Zhang, Gengxin; Dong, Hailiang; Xu, Zhiqin; Zhao, Donggao; Zhang, Chuanlun

2005-01-01

Microbial communities in ultra-high-pressure (UHP) rocks and drilling fluids from the Chinese Continental Scientific Drilling Project were characterized. The rocks had a porosity of 1 to 3.5% and a permeability of ∼0.5 mDarcy. Abundant fluid and gas inclusions were present in the minerals. The rocks contained significant amounts of Fe2O3, FeO, P2O5, and nitrate (3 to 16 ppm). Acridine orange direct counting and phospholipid fatty acid analysis indicated that the total counts in the rocks and the fluids were 5.2 × 103 to 2.4 × 104 cells/g and 3.5 × 108 to 4.2 × 109 cells/g, respectively. Enrichment assays resulted in successful growth of thermophilic and alkaliphilic bacteria from the fluids, and some of these bacteria reduced Fe(III) to magnetite. 16S rRNA gene analyses indicated that the rocks were dominated by sequences similar to sequences of Proteobacteria and that most organisms were related to nitrate reducers from a saline, alkaline, cold habitat; however, some phylotypes were either members of a novel lineage or closely related to uncultured clones. The bacterial communities in the fluids were more diverse and included Proteobacteria, Bacteroidetes, gram-positive bacteria, Planctomycetes, and Candidatus taxa. The archaeal diversity was lower, and most sequences were not related to any known cultivated species. Some archaeal sequences were 90 to 95% similar to sequences recovered from ocean sediments or other subsurface environments. Some archaeal sequences from the drilling fluids were >93% similar to sequences of Sulfolobus solfataricus, and the thermophilic nature was consistent with the in situ temperature. We inferred that the microbes in the UHP rocks reside in fluid and gas inclusions, whereas those in the drilling fluids may be derived from subsurface fluids. PMID:15933024

Observed Spatial and Temporal Variability of Subglacial Discharge-Driven Plumes in Greenland's Outlet Glacial Fjords

NASA Astrophysics Data System (ADS)

Sutherland, D.; Carroll, D.; Nash, J. D.; Shroyer, E.; Mickett, J.; Stearns, L. A.; Fried, M.; Bartholomaus, T.; Catania, G. A.

2015-12-01

Hydrographic and velocity observations in Greenland's outlet glacier fjords have revealed, unsurprisingly, a rich set of dynamics over a range of spatial and temporal scales. Through teasing apart the distinct processes that control circulation within these fjords, we are likely to better understand the impact of fjord circulation on modulating outlet glacier dynamics, and thus, changes in Greenland Ice Sheet mass balance. Here, we report on data from the summers of 2013-2015 in two neighboring fjords in the Uummannaq Bay region of west Greenland: Kangerlussuup Sermia (KS) and Rink Isbræ (RI). We find strong subglacial discharge driven plumes in both systems that evolve on synoptic and seasonal time scales, without the complicating presence of other circulation processes. The plumes both modify fjord water properties and respond to differences in ambient water properties, supporting the notion that a feedback exists between subglacial discharge plume circulation and water mass properties. This feedback between subglacial discharge and water properties potentially influences submarine melt rates at the glacier termini. Observed plume properties, including the vertical structure of velocity, and temperature and salinity anomalies, are compared favorably to model estimates. In KS, we find a near-surface intensified plume with high sediment content that slows and widens as it evolves downstream. In contrast, the plume in RI is entirely subsurface, ranging from 100-300 m depth at its core during summer, although it shows similar temperature, salinity, and optical backscatter signals to the KS plume. Importantly, the distinct vertical plume structures imprint on the overall water mass properties found in each fjord, raising the minimum temperatures by up to 1-2°C in the case of RI.

Two Fixed Ratio Dilutions for Soil Salinity Monitoring in Hypersaline Wetlands

PubMed Central

Herrero, Juan; Weindorf, David C.; Castañeda, Carmen

2015-01-01

Highly soluble salts are undesirable in agriculture because they reduce yields or the quality of most cash crops and can leak to surface or sub-surface waters. In some cases salinity can be associated with unique history, rarity, or special habitats protected by environmental laws. Yet in considering the measurement of soil salinity for long-term monitoring purposes, adequate methods are required. Both saturated paste extracts, intended for agriculture, and direct surface and/or porewater salinity measurement, used in inundated wetlands, are unsuited for hypersaline wetlands that often are only occasionally inundated. For these cases, we propose the use of 1:5 soil/water (weight/weight) extracts as the standard for expressing the electrical conductivity (EC) of such soils and for further salt determinations. We also propose checking for ion-pairing with a 1:10 or more diluted extract in hypersaline soils. As an illustration, we apply the two-dilutions approach to a set of 359 soil samples from saline wetlands ranging in ECe from 2.3 dS m-1 to 183.0 dS m-1. This easy procedure will be useful in survey campaigns and in the monitoring of soil salt content. PMID:26001130

Two fixed ratio dilutions for soil salinity monitoring in hypersaline wetlands.

PubMed

Herrero, Juan; Weindorf, David C; Castañeda, Carmen

2015-01-01

Highly soluble salts are undesirable in agriculture because they reduce yields or the quality of most cash crops and can leak to surface or sub-surface waters. In some cases salinity can be associated with unique history, rarity, or special habitats protected by environmental laws. Yet in considering the measurement of soil salinity for long-term monitoring purposes, adequate methods are required. Both saturated paste extracts, intended for agriculture, and direct surface and/or porewater salinity measurement, used in inundated wetlands, are unsuited for hypersaline wetlands that often are only occasionally inundated. For these cases, we propose the use of 1:5 soil/water (weight/weight) extracts as the standard for expressing the electrical conductivity (EC) of such soils and for further salt determinations. We also propose checking for ion-pairing with a 1:10 or more diluted extract in hypersaline soils. As an illustration, we apply the two-dilutions approach to a set of 359 soil samples from saline wetlands ranging in ECe from 2.3 dS m(-1) to 183.0 dS m(-1). This easy procedure will be useful in survey campaigns and in the monitoring of soil salt content.

Managing salinity in Upper Colorado River Basin streams: Selecting catchments for sediment control efforts using watershed characteristics and random forests models

USGS Publications Warehouse

Tillman, Fred; Anning, David W.; Heilman, Julian A.; Buto, Susan G.; Miller, Matthew P.

2018-01-01

Elevated concentrations of dissolved-solids (salinity) including calcium, sodium, sulfate, and chloride, among others, in the Colorado River cause substantial problems for its water users. Previous efforts to reduce dissolved solids in upper Colorado River basin (UCRB) streams often focused on reducing suspended-sediment transport to streams, but few studies have investigated the relationship between suspended sediment and salinity, or evaluated which watershed characteristics might be associated with this relationship. Are there catchment properties that may help in identifying areas where control of suspended sediment will also reduce salinity transport to streams? A random forests classification analysis was performed on topographic, climate, land cover, geology, rock chemistry, soil, and hydrologic information in 163 UCRB catchments. Two random forests models were developed in this study: one for exploring stream and catchment characteristics associated with stream sites where dissolved solids increase with increasing suspended-sediment concentration, and the other for predicting where these sites are located in unmonitored reaches. Results of variable importance from the exploratory random forests models indicate that no simple source, geochemical process, or transport mechanism can easily explain the relationship between dissolved solids and suspended sediment concentrations at UCRB monitoring sites. Among the most important watershed characteristics in both models were measures of soil hydraulic conductivity, soil erodibility, minimum catchment elevation, catchment area, and the silt component of soil in the catchment. Predictions at key locations in the basin were combined with observations from selected monitoring sites, and presented in map-form to give a complete understanding of where catchment sediment control practices would also benefit control of dissolved solids in streams.

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

PubMed Central

Green, Stefan J.; Prakash, Om; Jasrotia, Puja; Overholt, Will A.; Cardenas, Erick; Hubbard, Daniela; Tiedje, James M.; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.

2012-01-01

The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of rRNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure and that denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower-pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as the concentration of nitrogen species, oxygen level, and sampling season, did not appear to strongly influence the distribution of Rhodanobacter bacteria. The results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment. PMID:22179233

210Pb, 137Cs and 7Be in the sediments of coastal lakes on the polish coast: Implications for sedimentary processes.

PubMed

Woszczyk, Michał; Poręba, Grzegorz; Malinowski, Łukasz

2017-04-01

In this study we combined radioisotopes ( 210 Pb, 137 Cs and 7 Be) and hydrodynamic modeling to investigate sedimentary processes in three coastal lakes on the Polish Baltic coast. The research aimed at establishing the depth of sediment mixing and its effects on sediment geochemistry as well as showing the relationship between lake water salinity and radionuclide distribution in the sediment cores. We established that the intensity of mixing displayed appreciable variability throughout the lakes and the thickness of sediment mixing layer was between <2 and 22 cm. The mixing was primarily due to wind-induced waves. The vertical mixing was shown to shift sulfidation of the sediments towards deeper layers. We found that the distributions of radioisotopes, 137 Cs in particular, in the sediment cores from coastal lakes were strongly affected by the early diagenetic processes, which caused diffusive migration of radionuclides. The inventories of 210 Pb ex and 137 Cs in the lakes were positively related to salinity. The high inventories of both isotopes (3.2-10.9 kBq ·m -2 for 210 Pb ex and 3.0-6.0 kBq·m -2 for 137 Cs) in coastal lakes were explained by enhanced sedimentation within estuarine mixing zone and delivery of "additional" 210 Pb and 137 Cs to the lakes during saltwater ingressions. The results of this study have implications for the paleolimnology, sedimentology and biogeochemistry of coastal lakes. Copyright © 2017 Elsevier Ltd. All rights reserved.

Microbial oxidation and reduction of manganese: consequences in groundwater and applications.

PubMed

Gounot, A M

1994-08-01

In the natural environment, manganese is found as reduced soluble or adsorbed Mn(II) and insoluble Mn(III) and Mn(IV) oxides. Mn oxidation has been reported in various microorganisms. Several possible pathways, indirect or direct, have been proposed. A wider variety of Mn-reducing microorganisms, from highly aerobic to strictly anaerobic, has been described. The mechanisms of Mn reduction can be either an indirect process resulting from interactions with organic or inorganic compounds, or a direct enzymatic (electron-transfer) reaction. The role of microorganisms in Mn cycle is now well demonstrated by various methods in superficial natural environments, and research has been initiated on subsurface sediments. Observations in vivo (Rhône valley) and under in vitro suggested that bacterial activities are the main processes that promote manganese evolution and migration in shallow aquifers. After the building of hydroelectric dams, the stream of the Rhône was modified, giving rise to mud deposition on the bank. In the mud, bacteria are stimulated by the high organic content and consume oxygen. The redox potential drops. The manganese oxides previously formed under aerobic conditions are reduced and soluble manganese (Mn(II)) migrates into the aquifer. If the subsurface sediments are coarse-grained, the aquifer is well aerated, allowing the re-oxidation of Mn(II) by the oligotrophic attached bacteria in aquifer sediments. If the aquifer is confined, aeration is not sufficient for Mn-reoxidation. Mn(II) remains in a reduced state and migrates to the wells. Furthermore, the presence of organic matter in subsurface sediments results in the reduction of previously formed Mn oxides. Pseudo-amorphous manganese oxides, which were probably recently formed by bacteria, are more readily reduced than old crystalline manganese oxides. Although the concentrations of soluble manganese found in groundwaters are not toxic, it still is a problem since its oxidation results in darkening of water and plugging of pipes in drinking or industrial water systems. Soluble manganese can be removed from water by biological processes involving manganese-oxidizing bacteria, either in situ, or in sand filters after pumping. Various procedures are mentioned.

Lipid and DNA biomarker analyses of Narragansett Bay Sediments: Evaluating the UK'37 proxy in an Estuarine Environment

NASA Astrophysics Data System (ADS)

George, S. E.; Herbert, T.; Amaral-Zettler, L. A.; Richter, N.

2017-12-01

Long chain polyunsaturated alkenone (LCA) lipid biomarkers produced by haptophyte phytoplankton species within the Order Isochrysidales (Phylum Haptophyta) have proven exceptionally useful in paleotemperature studies by means of the Uk'37 and Uk37 indices. Two closely-related Group III haptophytes, Emiliania huxleyi and Gephyrocapsa oceanica are the primary alkenone synthesizers in the modern ocean, while freshwater systems host the distinct Group I phylotype, sometimes called the Greenland phylotype, in reference to the location of its original discovery. Group I haptophytes produce large quantities of the distinct C37:4 ketone, which acts as a chemical `fingerprint' in sediments. The utility of alkenones as a paleotemperature proxy in estuarine environments has remained largely untested, representing an under-utilized opportunity to construct high-resolution paleotemperature records from environments at the intersection of fluvial and marine systems. This uncertainty is due, in part, to the presence of multiple haptophyte groups in estuaries, resulting in a mixed alkenone signature. To determine the community composition of alkenone-producing haptophytes within Narragansett Bay, four geographically separated cores from within the Bay were analyzed for alkenones as well as haptophyte rRNA biomarker gene presence. Haptophyte rRNA genes (small and large subunit) were recovered from surface and near-subsurface samples, and in conjunction with alkenone profiles, reveal recent haptophyte community structure and alkenone production regimes throughout the Bay. A surprising result is the recovery of rRNA biomarker genes with a 100% match to the open-ocean alkenone producer E. huxleyi in locations away from large fresh water inputs to the Bay. Results of these analyses elucidate the effect of salinity and nutrient dynamics on alkenone-producing haptophyte communities and enhance applicability of long chain polyunsaturated alkenones as lipid biomarkers in estuarine environments. Future work will enhance Uk'37 analyses of Narragansett Bay sediments to better resolve historically and climatically significant events in the region, such as European settlement, the Industrial Revolution, and 20th century warming and eutrophication.

Butyltin sorption onto freshwater sediments: from batch experiments to the field values

NASA Astrophysics Data System (ADS)

Bancon-Montingy, C.; Aubert, G.; Chahinian, N.; Meyer, J.; Brunel, V.; Tournoud, M. G.

2009-04-01

Butyltins, and most particularly TBT were widely used by the industry in the 1970s and 1980s, namely as anti-fouling paints on ships. Although banned since 2003 in Europe, surveys still point out the presence of these compounds both in coastal and terrestrial environments. The resilience of organotin (OT) compounds can be explained by their high adsorption capacity. OTs can bond easily to particulate matter and "migrate" from the water column unto the sediments where their half-life can extend to a few decades. Consequently sediments can become important organotin stores and release OT compounds during dredging operations, storms, tides or floods. Studies on OT behavior in freshwater environments, mainly sediments, are scarce in the literature compared with marine sediments. However, it is known that sorption behaviour of organotin compounds on sediments is governed by the constituents of sediments, and the composition of interstitial water in the sediments and overlying water, i.e. grain size distribution, clay minerals, organic matter, iron, aluminium (hydr)oxides and carbonate in the sediments; salinity, ionic composition, and pH of interstitial water in the sediments and overlying water. The main objective of this work is to assess butyltin adsorption into the sediments of an intermittent river located in southern France: The Vène. Sediments were collected during high and low flow conditions and batch experiments were set up using "natural" and "crushed" sediments to assess the adsorption kinetics. Classical batch experiments and GC-ICP-MS analysis were carried out to measure the distribution coefficient (Kd). The influence of organic substances on sorption processes for organotin species was studied and the role of grain size distribution assessed by comparing natural and crushed sediments. The results indicated that organotin compounds are sorbed easily and quickly on freshwater sediments. The adsorption isotherm for butyltins follows the Freundlich equation which is used to describe the adsorption behaviour of non-polar organic matters. This is due to their organic substituent groups. The presence of organic matter modifies the sorption process: less OT is adsorbed onto the sediments. This leads to increased OT concentrations in solution and consequently a higher probability for assimilation by freshwater organisms. The comparison of our results to those reported in the literature for marine environments could not be carried out because of the wide differences in salinity and grain size distribution between the two environments.

Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments

PubMed Central

Martinez, Robert J.; Wu, Cindy H.; Beazley, Melanie J.; Andersen, Gary L.; Conrad, Mark E.; Hazen, Terry C.; Taillefert, Martial; Sobecky, Patricia A.

2014-01-01

Background Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. Methodology/Principal Findings Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC) Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P)] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P) and 20 day (G3P) amended treatments, maximum phosphate (PO4 3−) concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5) treatments and greatest with G3P (pH 6.8) treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%–50% and 3%–17% of total detected Archaea and Bacteria, respectively. Conclusions/Significance This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium, strategies that harness microbial phosphate metabolism to promote uranium phosphate precipitation could offer an alternative approach for in situ sequestration. PMID:24950228

Observations of seasonal exchange in the Celtic Sea slope region from underwater gilders

NASA Astrophysics Data System (ADS)

Porter, Marie; Inall, Mark; Smeed, David; Palmer, Matthew; Dumont, Estelle; Aleynik, Dmitry

2015-04-01

Between June 2012 and January 2013, four underwater gliders, profiling to a maximum depth of 1000m, occupied a transect between 47.6°N, 10.3°W and 48.4°N, 9.3°W, perpendicular to the Celtic Sea continental slope. Due to the significant and well-documented internal tide activity in this region and the relatively slow through-water speed of gliders it is first demonstrated that the chosen sampling methodology minimised aliasing of the internal tide. Gliders were flown along a repeat transect and care was taken to ensure that each location was sampled at a different phase of the tide on repeat occupations. Through monthly averaging of the transect data, the effects of the internal tide are minimised and the lower frequency processes made visible. In this presentation we highlight the importance of the lower frequency variability in contributing to cross-slope exchange. Analysis of monthly averaged glider transect data suggests two distinct regimes; 1) Summer, June - October, when the surface water was temperature stratified and, 2) Winter, from October to January, when the seasonal thermocline was mixed down to below the depth of the shelf break (200 m). During the stratified summer months a well-defined shelf break salinity front limits the exchange of water between the ocean and the shelf, preventing the spread of the more saline, sub-surface ocean water (centred at ~150m) onto the shelf. Nevertheless, some cross-slope flow is identified during these months: an intermediate depth salinity minimum (centred at ~600m) is observed to upwell (from 600m to 200-300m) up the slope, sometimes continuing onto the shelf. As the stratification is eroded during the winter months, subsurface upwelling switches to downwelling, and the intermediate depth salinity minimum (~600m) retreats away from the slope region removing it as a potential source of oceanic water on the shelf. Downwelling near to the slope does however allow for an intrusion of the shallower high salinity water onto the shelf reducing the control of the shelf break salinity front, although it has not been ascertained whether this extends further onto the shelf than the shelf break region.

Long-Term Effects of Dredging Operations Program: Assessing Bioaccumulation in Aquatic Organisms Exposed to Contaminated Sediments

DTIC Science & Technology

1991-07-01

negligible (Bradley and Sprague 1985). 49. Salinity has complex effects , both direct and indirect, on bioac- cumulation and bioavailability. Salinity ... salinity effect on bioaccumulation is present, it will usually be observed at < 1 part per thousand salinity ; increasing the salinity does not increase...the effect . 50. Increasing salinity tends to decrease the water solubility of neu- tral organic chemicals, and also decreases the concentration of both

Environmental controls on the speciation and distribution of mercury in surface sediments of a tropical estuary, India.

PubMed

Chakraborty, Parthasarathi; Babu, P V Raghunadh

2015-06-15

Distribution and speciation of mercury (Hg) in the sediments from a tropical estuary (Godavari estuary) was influenced by the changing physico-chemical parameters of the overlying water column. The sediments from the upstream and downstream of the estuary were uncontaminated but the sediments from the middle of the estuary were contaminated by Hg. The concentrations of Hg became considerably less during the monsoon and post monsoon period. Total Hg concentrations and its speciation (at the middle of the estuary) were dependent on the salinity of the overlying water column. However, salinity had little or no effect on Hg association with organic phases in the sediments at downstream. Increasing pH of the overlying water column corresponded with an increase in the total Hg content in the sediments. Total organic carbon in the sediments played an important role in controlling Hg partitioning in the system. Uncomplexed Hg binding ligands were available in the sediments. Copyright © 2015 Elsevier Ltd. All rights reserved.

Rates and extent of microbial debromination in the deep subseafloor biosphere

NASA Astrophysics Data System (ADS)

Berg, R. D.; Solomon, E. A.; Morris, R. M.

2013-12-01

Recent genomic and porewater geochemical data suggest that reductive dehalogenation of a wide range of halogenated organic compounds could represent an important energy source for deep subseafloor microbial communities. At continental slope sites worldwide, there is a remarkably linear relationship between porewater profiles of ammonium and bromide, indicating that the factors controlling the distribution and rates of dehalogenation have the potential to influence carbon and nitrogen cycling in the deep subsurface biosphere. Though this metabolic pathway could play an important role in the cycling of otherwise refractory pools of carbon and nitrogen in marine sediments and provide energy to microbial communities in the deep subsurface biosphere, the rates and extent of dehalogenation in marine sediments are poorly constrained. Here we report net reaction rate profiles of debromination activity in continental slope sediments, calculated from numerical modeling of porewater bromide profiles from several margins worldwide. The reaction rate profiles indicate three common zones of debromination activity in slope sediments: 1) low rates of debromination, and a potential bromine sink, in the upper sediment column correlating to the sulfate reduction zone, with net bromide removal rates from -3.6 x 10^-2 to -4.85 x 10^-1 μmol m^-2 yr^-1, 2) high rates of debromination from the sulfate-methane transition zone to ~40-100 mbsf, with net bromide release rates between 7.1 x 10^-2 to 3.9 x 10^-1 μmol m^-2 yr^-1, and 3) an inflection point at ~40-100 mbsf, below which net rates of debromination decrease by an order of magnitude and at several sites are indistinguishable from zero. These results indicate that dehalogenating activity is widely distributed in marine sediments, providing energy to fuel deep subseafloor microbial communities, with potentially important consequences for the global bromine and nitrogen cycles.

Shallow geology, sea-floor texture, and physiographic zones of Buzzards Bay, Massachusetts

USGS Publications Warehouse

Foster, David S.; Baldwin, Wayne E.; Barnhardt, Walter A.; Schwab, William C.; Ackerman, Seth D.; Andrews, Brian D.; Pendleton, Elizabeth A.

2015-01-07

Geologic, sediment texture, and physiographic zone maps characterize the sea floor of Buzzards Bay, Massachusetts. These maps were derived from interpretations of seismic-reflection profiles, high-resolution bathymetry, acoustic-backscatter intensity, bottom photographs, and surficial sediment samples. The interpretation of the seismic stratigraphy and mapping of glacial and Holocene marine units provided a foundation on which the surficial maps were created. This mapping is a result of a collaborative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to characterize the surface and subsurface geologic framework offshore of Massachusetts.

Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea.

PubMed

Swan, Brandon K; Ehrhardt, Christopher J; Reifel, Kristen M; Moreno, Lilliana I; Valentine, David L

2010-02-01

Sulfidic, anoxic sediments of the moderately hypersaline Salton Sea contain gradients in salinity and carbon that potentially structure the sedimentary microbial community. We investigated the abundance, community structure, and diversity of Bacteria and Archaea along these gradients to further distinguish the ecologies of these domains outside their established physiological range. Quantitative PCR was used to enumerate 16S rRNA gene abundances of Bacteria, Archaea, and Crenarchaeota. Community structure and diversity were evaluated by terminal restriction fragment length polymorphism (T-RFLP), quantitative analysis of gene (16S rRNA) frequencies of dominant microorganisms, and cloning and sequencing of 16S rRNA. Archaea were numerically dominant at all depths and exhibited a lesser response to environmental gradients than that of Bacteria. The relative abundance of Crenarchaeota was low (0.4 to 22%) at all depths but increased with decreased carbon content and increased salinity. Salinity structured the bacterial community but exerted no significant control on archaeal community structure, which was weakly correlated with total carbon. Partial sequencing of archaeal 16S rRNA genes retrieved from three sediment depths revealed diverse communities of Euryarchaeota and Crenarchaeota, many of which were affiliated with groups previously described from marine sediments. The abundance of these groups across all depths suggests that many putative marine archaeal groups can tolerate elevated salinity (5.0 to 11.8% [wt/vol]) and persist under the anaerobic conditions present in Salton Sea sediments. The differential response of archaeal and bacterial communities to salinity and carbon patterns is consistent with the hypothesis that adaptations to energy stress and availability distinguish the ecologies of these domains.

Borehole geophysical logs at Naval Weapons Industrial Reserve Plant, Dallas, Texas

USGS Publications Warehouse

Braun, Christopher L.; Anaya, Roberto; Kuniansky, Eve L.

2000-01-01

A shallow alluvial aquifer at the Naval Weapons Industrial Reserve Plant near Dallas, Texas, has been contaminated by organic solvents used in the fabrication and assembly of aircraft and aircraft parts. Natural gamma-ray and electromagnetic-induction borehole geophysical logs were obtained from 162 poly vinyl-chloride-cased wells at the plant and were integrated with existing lithologic data to improve site characterization of the subsurface alluvium. Software was developed for filtering and classifying the log data and for processing, analyzing, and creating graphical output of the digital data. The alluvium consists of mostly fine-grained low-permeability sediments; however for this study, the alluvium was classified into low, intermediate, and high clay-content sediments on the basis of the gamma-ray logs. The low clay-content sediments were interpreted as being relatively permeable, whereas the high clay-content sediments were interpreted as being relatively impermeable. Simple statistics were used to identify zones of potentially contaminated sediments on the basis of the gamma-ray log classifications and the electromagnetic-induction log conductivity data.

Faulting of gas-hydrate-bearing marine sediments - contribution to permeability

USGS Publications Warehouse

Dillon, William P.; Holbrook, W.S.; Drury, Rebecca; Gettrust, Joseph; Hutchinson, Deborah; Booth, James; Taylor, Michael

1997-01-01

Extensive faulting is observed in sediments containing high concentrations of methane hydrate off the southeastern coast of the United States. Faults that break the sea floor show evidence of both extension and shortening; mud diapirs are also present. The zone of recent faulting apparently extends from the ocean floor down to the base of gas-hydrate stability. We infer that the faulting resulted from excess pore pressure in gas trapped beneath the gas hydrate-beating layer and/or weakening and mobilization of sediments in the region just below the gas-hydrate stability zone. In addition to the zone of surface faults, we identified two buried zones of faulting, that may have similar origins. Subsurface faulted zones appear to act as gas traps.

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments▿ †

PubMed Central

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

2009-01-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem. PMID:19749069

Bacterial Diversity in the Soda Saline Crater Lake from Isabel Island, Mexico.

PubMed

Aguirre-Garrido, José Félix; Ramírez-Saad, Hugo César; Toro, Nicolás; Martínez-Abarca, Francisco

2016-01-01

Isabel Lake is a moderate saline soda crater lake located in Isabel Island in the eastern tropical Pacific coast of Mexico. Lake is mainly formed by rainfall and is strongly affected by evaporation and high input of nutrients derived from excretions of a large bird community inhabiting the island. So far, only the island macrobiota has been studied. The knowledge of the prokaryotic biota inhabiting the upper layers of this meromictic lake can give clues for the maintenance of this ecosystem. We assessed the diversity and composition of prokaryotic community in sediments and water of the lake by DGGE profiling, 16S rRNA gene amplicon pyrosequencing, and cultivation techniques. The bacterial community is largely dominated by halophilic and halotolerant microorganisms. Alpha diversity estimations reveal higher value in sediments than in water (P > 0.005). The lake water is dominated by γ-Proteobacteria belonging to four main families where Halomonadaceae presents the highest abundance. Aerobic, phototrophic, and halotolerant prokaryotes such as Cyanobacteria GPIIa, Halomonas, Alcanivorax, Idiomarina, and Cyclobacterium genera are commonly found. However, in sediment samples, Formosa, Muricauda, and Salegentibacter genera corresponding to Flavobacteriaceae family accounted for 15-20 % of the diversity. Heterotrophs like those involved in sulfur cycle, Desulfotignum, Desulfuromonas, Desulfofustis, and Desulfopila, appear to play an important role in sediments. Finally, a collection of aerobic halophilic bacterial isolates was created from these samples; members of the genus Halomonas were predominantly isolated from lake water. This study contributes to state the bacterial diversity present in this particular soda saline crater lake.

Fungal diversity from deep marine subsurface sediments (IODP 317, Canterbury Basin, New Zealand)

NASA Astrophysics Data System (ADS)

Redou, V.; Arzur, D.; Burgaud, G.; Barbier, G.

2012-12-01

Recent years have seen a growing interest regarding micro-eukaryotic communities in extreme environments as a third microbial domain after Bacteria and Archaea. However, knowledge is still scarce and the diversity of micro-eukaryotes in such environments remains hidden and their ecological role unknown. Our research program is based on the deep sedimentary layers of the Canterbury Basin in New Zealand (IODP 317) from the subsurface to the record depth of 1884 meters below seafloor. The objectives of our study are (i) to assess the genetic diversity of fungi in deep-sea sediments and (ii) identify the functional part in order to better understand the origin and the ecological role of fungal communities in this extreme ecosystem. Fingerprinting-based methods using capillary electrophoresis single-strand conformation polymorphism and denaturing high-performance liquid chromatography were used as a first step to raise our objectives. Molecular fungal diversity was assessed using amplification of ITS1 (Internal Transcribed Spacer 1) as a biomarker on 11 samples sediments from 3.76 to 1884 meters below seafloor. Fungal molecular signatures were detected throughout the sediment core. The phyla Ascomycota and Basidiomycota were revealed with DNA as well as cDNA. Most of the phylotypes are affiliated to environmental sequences and some to common fungal cultured species. The discovery of a present and metabolically active fungal component in this unique ecosystem allows some interesting first hypotheses that will be further combined to culture-based methods and deeper molecular methods (454 pyrosequencing) to highlight essential informations regarding physiology and ecological role of fungal communities in deep marine sediments.

Aromatic-degrading Sphingomonas isolates from the deep subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Romine, M.F.; Balkwill, D.L.

An obligately aerobic chemoheterotrophic bacterium (strain F199) previously isolated from Southeast Coastal Plain subsurface sediments and shown to degrade toluene, naphthalene, and other aromatic compounds was characterized by analysis of its 16S rRNA nucleotide base sequence and cellular lipid composition. Strain F199 contained 2-OH14:0 and 18:1{omega}7c as the predominant cellular fatty acids and sphingolipids that are characteristic of the genus Sphingomonas. Phylogenetic analysis of its 16SrRNA sequence indicated that F199 was most closely related to Sphingomonas capsulata among the bacteria currently in the Ribosomal Database. Five additional isolates from deep Southeast Coastal Plain sediments were determined by 16S rRNA sequencemore » analysis to be closely related to F199. These strains also contained characteristic sphingolipids. Four of these five strains could also grow on a broad range of aromatic compounds and could mineralize [{sup 14C}]toluene and [{sup 14C}]naphthalene. S. capsulata (ATCC 14666), Sphingomonas paucimobiolis (ATCC 29837), and one of the subsurface isolates were unable to grow on any of the aromatic compounds or mineralize toluene or naphthalene. These results indicate that bacteria within the genus Sphingomonas are present in Southeast Coastal Plain subsurface sediments and that the capacity for degrading a broad range of substituted aromatic compounds appears to be common among Sphingomonas species from this environment. 41 refs., 2 figs., 5 tabs.« less

High marsh foraminiferal assemblages' response to intra-decadal and multi-decadal precipitation variability, between 1934 and 2010 (Minho, NW Portugal)

NASA Astrophysics Data System (ADS)

Fatela, Francisco; Moreno, João; Leorri, Eduardo; Corbett, Reide

2014-10-01

Foraminiferal assemblages of Caminha tidal marshes have been studied since 2002 revealing a peculiar dominance of brackish species, such as Haplophragmoides manilaensis, Haplophragmoides wilberti, Haplophragmoides sp., Pseudothurammina limnetis and Trochamminita salsa/irregularis in the high marshes of the Minho and the Coura lower estuaries. The assemblage composition reflects low salinity conditions, despite the short distance to the estuarine mouth (~ 4 km). However, in May 2010, the presence of salt marsh species Trochammina inflata and Jadammina macrescens became very significant, likely a result of 5 consecutive dry years and a corresponding salinity rise in sediment pore water. Correspondence analysis (CA) groups the surface samples according to their marsh zone, showing a positive correlation with the submersion time of each sampling point. The brackish and normal salinity foraminiferal species appear separated in the CA. This observation was applied to the top 10 cm of a high marsh sediment core that corresponds to the period of instrumental record of precipitation and river flow in the Minho region. We found that river flow strongly correlates with precipitation in the Lima and Minho basins. The longer precipitation record was, therefore, used to interpret the foraminiferal assemblages' variability. Three main phases were distinguished along ca. 80 years of precipitation data: 1) negative anomalies from 1934 to 1957; 2) positive anomalies from 1958 to 1983; and 3) negative anomalies from 1984 to 2010. This last dryer period exhibits the precipitation maximum and the greatest amplitude of rainfall values. High marsh foraminifera reveals a fast response to these short-term shifts; low salinity species relative abundance increases when precipitation increases over several decades, as well as in the same decade, in the years of heavy rainfall of dryer periods. High marsh foraminifera records the increase of freshwater flooding and seepage by 1) decreasing abundance and 2) increasing the dominance of low salinity species. On the other hand, low precipitation over ca. 5 years increases the assemblage productivity and the relative abundance of normal salinity species. The positive correlation found between winter precipitation and the NAO winter index indicates that the Minho region is a part of the North Atlantic climate dynamics and demonstrates that the foraminiferal record from Caminha high marsh may be applied in high-resolution studies of SW Europe climate evolution.

Dynamics of phytoplankton productivity and exopolysaccharides (EPS and TEP) pools in the Seine Estuary (France, Normandy) over tidal cycles and over two contrasting seasons.

PubMed

Morelle, Jérôme; Schapira, Mathilde; Claquin, Pascal

2017-10-01

Exopolysaccharides (EPS) play an important role in the carbon flux and may be directly linked to phytoplankton and microphytobenthos production, most notably in estuarine systems. However the temporal and spatial dynamics of estuarine EPS are still not well understood, nor how primary productivity triggers this variability at these different scales. The aim of this study was to investigate the primary productivity of phytoplankton and EPS dynamics in the Seine estuary over a tidal cycle in three different haline zones over two contrasted seasons. The other objectives was to investigate the origin of pools of soluble carbohydrates (S-EPS) and transparent exopolymeric particles (TEP) in phytoplankton, microphytobenthos or other compartments. High frequency measurements of productivity were made in winter and summer 2015. Physical and chemical parameters, biomass and EPS were measured at hourly intervals in sub-surface waters and just above the water sediment-interface. Our results confirmed that high frequency measurements improve the accuracy of primary productivity estimations and associated carbon fluxes in estuaries. The photosynthetic parameters were shown to be strongly controlled by salinity and by the concentrations of suspended particle matter at the smallest temporal and at spatial scales. At these scales, our results showed an inverse relationship between EPS concentrations and biomass and productivity, and a positive relationship with sediment resuspension. Additionally, the distribution of EPS appears to be linked to hydrodynamics with the tide at daily scale and with the winter at seasonal scale. At spatial scale, the maximum turbidity zone played an important role in the distribution of TEP. Our results suggest that, in the Seine estuary, between 9% and 33% of the S-EPS pool in the water column can be attributed to phytoplankton excretion, while only 0.4%-1.6% (up to 6.14% in exceptional conditions) originates from the microphytobenthos compartments. Most EPS was attributed to remobilization of detrital carbon pools in the maximum turbidity zone and in the sediment or allochthonous origin. Copyright © 2017 Elsevier Ltd. All rights reserved.

Tropical North Atlantic subsurface temperature anomalies: evidence for AMOC variability across Dansgaard-Oscheger events?

NASA Astrophysics Data System (ADS)

Parker, A. O.; Schmidt, M. W.; Chang, P.

2013-12-01

A common mechanism often proposed to explain the abrupt climate events of Marine Isotope Stage 3 (MIS 3), known as Dansgaard-Oscheger (D-O) cycles, invokes variability in the strength of the Atlantic Meridional Overturning Circulation (AMOC). Although proxy evidence shows that D-O cycles resulted in large-scale changes in atmospheric circulation patterns around the planet, an understanding of how the AMOC varied across these events remains unclear. Coupled ocean-atmosphere models demonstrate that AMOC variability is linked to abrupt change in the tropical North Atlantic (TNA) through both oceanic and atmospheric processes. A reduction in AMOC causes a subsurface oceanic warming in the TNA as the western boundary current slows, allowing the warm salinity maximum waters to enter the deep tropics. Recently, Schmidt et al. (2012) identified an abrupt subsurface warming at the onset of AMOC slow down during both Heinrich 1 and the Younger Dryas, suggesting this signal may be a robust feature of AMOC variability in the TNA. In order to determine if AMOC variability was the driver of D-O cycles during MIS 3, we present new, high-resolution Mg/Ca and δ18O records from the near-surface dwelling planktonic foraminifera G. ruber and the lower-thermocline dwelling planktonic foraminifera G. crassaformis from 22 - 52 ka BP in southern Caribbean core VM12-107 (11.33oN, 66.63oW, 1079m depth). Sedimentation rates in VM12-107 average 24cm/kyr, providing high temporal resolution able to resolve millennial-scale events. The G. ruber δ18O record shows abrupt oscillations up to 1‰ as well as Mg/Ca-based SST changes of 1.5 - 2oC that are synchronous with some D-O cycles recorded in the Greenland ice cores. Given our ability to resolve D-O cycles in the planktonic record, we find that Mg/Ca ratios from G. crassaformis were, on average, 0.13 × 0.04 mmol/mol higher during stadials. This equates to a temperature increase during stadials of up to 1.5oC. These results imply that AMOC variability played an important role in at least some millennial-scale D-O cycles during MIS 3.

Wind-driven Sea-Ice Changes Intensify Subsurface Warm Water Intrusion into the West Antarctic Land Ice Front

NASA Astrophysics Data System (ADS)

Li, X.; Gille, S. T.; shang-Ping, X.; Xie, S. P.; Holland, D. M.; Holland, M. M.

2016-12-01

The climate change observed around Antarctica in recent decades is characterized by distinct zonally asymmetric patterns, with the strongest changes over West Antarctica. These changes are marked by strong land ice melting and sea ice redistribution around West Antarctica. This is associated with temperature and circulation anomalies in the ocean and atmosphere around the same area. In this study, we comprehensively examine the coherency between these changes using a combination of observations and numerical simulations. Results show that the atmospheric circulation changes distinctly drive the changes in ocean circulation and sea ice distribution. In addition, the atmospheric circulation induced sea ice changes play an important role in lifting the subsurface ocean temperature and salinity around the West Antarctica. During recent decades, the Amundsen Sea Low (ASL) has deepened, especially in austral autumn and winter. This deepened ASL has intensified the offshore wind near the coastal regions of the Ross Sea. Driven by these atmospheric changes, more sea ice has formed near West Antarctica in winter. In contrast, more sea ice melts during the summer. This strengthened sea ice seasonality has been observed and successfully reproduced in the model simulation. The wind-driven sea ice changes causes a surface freshening over the Ross and Amundsen Seas, with a subsurface salinity increase over the Ross Sea. The additional fresh/salt water fluxes thus further change the vertical distribution of salinity and strengthen the stratification in the Ross and Amundsen Seas. As a result of the above ice-ocean process, the mixed-layer depth around the Ross and Amundsen Seas shallows. By weakening the vertical heat transport near the surface layer, and inducing an upward movement of the circumpolar deep water (CDW), this process freshened and cooled the surface layer, while the salinity and temperature in the sub-surface ocean are increased, extending from 150 meters to >700 meters. Around the Amundsen Sea, warm water touches the continent, which could potentially contribute to the accelerated land ice melting over this area.

Spatial variation in armouring in a channel with high sediment supply

Treesearch

T. E. Lisle; M. A. Madej

1992-01-01

Abstract - Recent advances in our understanding of the origin and function of armouring in gravel-bed rivers have not addressed the role of non-uniformity and unsteadiness of flow. These flow attributes have important influences on both the surface and subsurface bed material size distributions which are observed at low flow, from which we commonly make inferences...

Ecological drivers and habitat associations of estuarine bivalves

PubMed Central

Tunberg, Björn G.; Johnston, Cora A.; Barshis, Daniel J.

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function. PMID:26587338

Ecological drivers and habitat associations of estuarine bivalves.

PubMed

McKeon, C Seabird; Tunberg, Björn G; Johnston, Cora A; Barshis, Daniel J

2015-01-01

Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. The greatest diversity was found in higher salinity euhaline sites, while the greatest abundance of individual bivalves was found in medium salinity mixohaline sites, the lowest diversity and abundances were found in the low salinity oligohaline sites, demonstrating a strong positive association between salinity and diversity/abundance. Water management decisions for the estuary should incorporate understanding of the role of salinity on bivalve diversity, abundance, and ecosystem function.

Biomarkers in Lake Van sediments reveal dry conditions in eastern Anatolia during 110.000-10.000 years B.P.

NASA Astrophysics Data System (ADS)

Randlett, Marie-Eve; Bechtel, Achim; van der Meer, Marcel T. J.; Peterse, Francien; Litt, Thomas; Pickarski, Nadine; Kwiecien, Ola; Stockhecke, Mona; Wehrli, Bernhard; Schubert, Carsten J.

2017-02-01

Lipid biomarkers were analyzed in Lake Van sediments covering the last 600 ka, with a focus on the period between 110 and 10 ka, when a broad maximum in pore water salinity as a relict from the past suggests dry conditions. The occurrence and distribution of biomarkers indicative for terrestrial plants (long-chain n-alkane C29), haptophyte algae (methyl alkenones C37) and halophilic archaea (archaeol) all point toward a dry climate in Lake Van region during this time interval. The hydrogen isotopic composition of C29 n-alkanes (δDC29) and C37 alkenones (δDC37) is enriched between MIS 4 and MIS 2, which is interpreted as a decrease in the regional ratio of precipitation to evaporation. Similarly, the low abundance of the acyclic glycerol dialkyl glycerol tetraether GDGT-0 relative to archaeol, quantified by the Archaeol and Caldarchaeol Ecometric (ACE) is assumed to reflect the presence of halophilic euryarchaeota adapted to high salinity water. The climate around Lake Van appears in phase with the Yammouneh basin 800 km southwest and Lake Urmia 250 km southeast of Lake Van over the last two glacial periods. The results highlight the potential of combining ACE, δDC29, and δDC37 for reconstructing salinity changes and regional precipitation to evaporation ratio from lake sediments.

Salinity of the Early and Middle Eocene Arctic Ocean From Oxygen Isotope Analysis of Fish Bone Carbonate

NASA Astrophysics Data System (ADS)

Waddell, L. M.; Moore, T. C.

2006-12-01

Plate tectonic reconstructions indicate that the Arctic was largely isolated from the world ocean during the early and middle Eocene, with exchange limited to shallow, and possibly intermittent, connections to the North Atlantic and Tethys (via the Turgay Strait). Relative isolation, combined with an intensification of the hydrologic cycle under an Eocene greenhouse climate, is suspected to have led to the development of a low- salinity surface water layer in the Arctic that could have affected deep and intermediate convection in the North Atlantic. Sediment cores recently recovered from the Lomonosov Ridge by the IODP 302 Arctic Coring Expedition (ACEX) allow for the first assessment of the salinity of the Arctic Ocean during the early and middle Eocene. Stable isotope analysis performed on the structural carbonate of fish bone apatite from ~30 samples between the ages of ~55 and ~44 myr yielded δ18O values between -6.84‰ and -2.96‰ VPDB, with a mean value of -4.89‰. From the δ18O values we calculate that the Arctic Ocean was probably brackish during most of the early and middle Eocene, with an average salinity of 19 to 24‰. Negative excursions in the δ18O record (<-6‰) indicate three events during which the salinity of the Arctic surface waters was severely lowered: the Paleocene Eocene Thermal Maximum (PETM), the Azolla event at ~49 Ma, and a third previously unidentified event at ~46 Ma. During the PETM, low salinities developed under conditions of increased regional precipitation and runoff associated with extreme high latitude warmth and possible tectonic uplift in the North Atlantic. During the other two low-salinity events, sea level was lowered by ~20-30 m, implying a possible severing of Arctic connections to the world ocean. The most positive δ18O value (-2.96‰) occurs at ~45 Ma, the age of the youngest dropstone discovered in the ACEX sediments, and may therefore correspond to a climatic cooling rather than a high salinity event.

Hydrothermal sediments are a source of water column Fe and Mn in the Bransfield Strait, Antarctica

NASA Astrophysics Data System (ADS)

Aquilina, Alfred; Homoky, William B.; Hawkes, Jeffrey A.; Lyons, Timothy W.; Mills, Rachel A.

2014-07-01

Short sediment cores were collected from ∼1100 m water depth at the top of Hook Ridge, a submarine volcanic edifice in the Central Basin of the Bransfield Strait, Antarctica, to assess Fe and Mn supply to the water column. Low-temperature hydrothermal fluids advect through these sediments and, in places, subsurface H2S is present at high enough concentrations to support abundant Sclerolinum sp., an infaunal tubeworm that hosts symbiotic thiotrophic bacteria. The water column is fully oxic, and oxygen penetration depths at all sites are 2-5 cmbsf. Pore water Fe and Mn content is high within the subsurface ferruginous zone (max. 565 μmol Fe L-1, >3-7 cmbsf)-14-18 times higher than values measured at a nearby, background site of equivalent water depth. Diffusion and advection of pore waters supply significant Fe and Mn to the surface sediment. Sequential extraction of the sediment demonstrates that there is a significant enrichment in a suite of reactive, authigenic Fe minerals in the upper 0-5 cm of sediment at one site characterised by weathered crusts at the seafloor. At a site with only minor authigenic mineral surface enrichment we infer that leakage of pore water Fe and Mn from the sediment leads to enriched total dissolvable Fe and Mn in bottom waters. An Eh sensor mounted on a towed package mapped a distinct Eh signature above this coring site which is dispersed over several km at the depth of Hook Ridge. We hypothesise that the main mechanism for Fe and Mn efflux from the sediment is breach of the surface oxic layer by the abundant Sclerolinum sp., along with episodic enhancements by physical mixing and resuspension of sediment in this dynamic volcanic environment. We propose that Hook Ridge sediments are an important source of Fe and Mn to the deep waters of the Central Basin in the Bransfield Strait, where concentrations are sustained by the benthic flux, and Fe is stabilised in the water column as either colloidal phases or ligand-bound dissolved species. Entrainment of this water mass into the Drake Passage and thereby the Antarctic Circumpolar Current could provide a significant metal source to this HNLC region of the Southern Ocean if mixing and upwelling occurs before removal of this metal pool to underlying sediments. Sediment-covered volcanic ridges are common within rifted margins and may play a previously overlooked role in the global Fe cycle.

Sediment dynamics in the lower Mekong River: Transition from tidal river to estuary

NASA Astrophysics Data System (ADS)

Nowacki, Daniel J.; Ogston, Andrea S.; Nittrouer, Charles A.; Fricke, Aaron T.; Van, Pham Dang Tri

2015-09-01

A better understanding of flow and sediment dynamics in the lowermost portions of large-tropical rivers is essential to constraining estimates of worldwide sediment delivery to the ocean. Flow velocity, salinity, and suspended-sediment concentration were measured for 25 h at three cross sections in the tidal Song Hau distributary of the Mekong River, Vietnam. Two campaigns took place during comparatively high-seasonal and low-seasonal discharge, and estuarine conditions varied dramatically between them. The system transitioned from a tidal river with ephemeral presence of a salt wedge during high flow to a partially mixed estuary during low flow. The changing freshwater input, sediment sources, and estuarine characteristics resulted in seaward sediment export during high flow and landward import during low flow. The Dinh An channel of the Song Hau distributary exported sediment to the coast at a rate of about 1 t s-1 during high flow and imported sediment in a spatially varying manner at approximately 0.3 t s-1 during low flow. Scaling these values results in a yearly Mekong sediment discharge estimate about 65% smaller than a generally accepted estimate of 110 Mt yr-1, although the limited temporal and spatial nature of this study implies a relatively high degree of uncertainty for the new estimate. Fluvial advection of sediment was primarily responsible for the high-flow sediment export. Exchange-flow and tidal processes, including local resuspension, were principally responsible for the low-flow import. The resulting bed-sediment grain size was coarser and more variable during high flow and finer during low, and the residual flow patterns support the maintenance of mid-channel islands. This article was corrected on 7 OCT 2015. See the end of the full text for details.

The hydrological response of a small catchment after the abandonment of terrace cultivation. A study case in northwestern Spain

NASA Astrophysics Data System (ADS)

Llorente-Adán, Jose A.; Lana-Renault, Noemí; Galilea, Ianire; Ruiz-Flaño, Purificacion

2015-04-01

Terrace construction for cultivation results in a complete transformation of the hillslopes to a series of flat sectors and almost vertical steps. This strategy, which involves a redistribution of soils and a re-organization of the drainage network, provides fertile soil over steep slopes, improves infiltration and controls overland flow under conditions of intense rainstorms. In Camero Viejo (north-western Iberian ranges) most of the hillslopes are occupied by terraced fields. During the XXth century, rural population declined and agricultural practices were abandoned. In this area, a small catchment (1.9 km2) was monitored in 2012 for studying how the abandonment of agricultural terraces affect water and sediment transfer from the hillslopes to the channels. Terraces occupy 40% of the catchment and are covered by sparse grass and shrubs. The equipment installed in the catchment registers continuously meteorological data, discharge and water table fluctuations. Data on suspended sediment transport is obtained by means of a rising-stage sampler. Here we present the hydrological results corresponding to the years 2012-13 and 2013-14. The hydrological response of the catchment was moderate (annual runoff coefficient < 0.20), which could be in part explained by the high evapotranspiration rates reported in the area. Lows flows were recorded in summer and autumn, when the water reserves of the catchment were dry, and high flows occurred from January, when the catchment became wetter. The shape of the hydrographs, with slow response times, moderate peakflows and long recession limbs suggested a large contribution of subsurface flow, probably favored by deep and well structured soils in the bench terraces. Soil saturation areas were not observed during the study period, suggesting that soil infiltration processes and subsurface flow are important, and that the drainage system of the terraces is probably well maintained. No suspended sediment has been collected so far, confirming the hypothesis that subsurface flow might be a dominant runoff generation process.

Estimating Surface/Subsurface Sediment Mixing in Karst Settings Using 7Be Isotopes

NASA Astrophysics Data System (ADS)

Wicks, C. M.; Paylor, R. L.; Bentley, S. J.

2018-03-01

This study shows that the cosmogenic radionuclide beryllium-7 can be used to track sediment movement through caves. The activities of beryllium-7 and cesium-137 were measured in two different karst settings at both surface and subsurface sites before and after storm runoff events. At one site, 7Be-enriched sediment was detected up to 1.5 km along a stream conduit after a moderate storm event; however, the activity of 137Cs was too variable to show a meaningful pattern. The percentages of surface sediment that was found ranged from 0 to 52% along the entire 3 km cave stream and from 33 to 52% along the upper 1.5 km. At the other site, as much as 96% of the sediment initially discharged at the spring during a storm event was fresh surface material that had traveled into and through the cave stream. Moreover, during the 4 day runoff event, approximately 23% of the total suspended sediment flux was estimated to originate from surface erosion with 78% being reworked sediment from within the cave. The data in this study show that cosmogenic radionuclides with multiyear half-lives are too long-lived to track sediment origins in the caves; whereas, 7Be with a 53.2 day half-life, can be used to track movement of sediment along cave streams.

Impact of abrupt deglacial climate change on tropical Atlantic subsurface temperatures

PubMed Central

Schmidt, Matthew W.; Chang, Ping; Hertzberg, Jennifer E.; Them, Theodore R.; Ji, Link; Otto-Bliesner, Bette L.

2012-01-01

Both instrumental data analyses and coupled ocean-atmosphere models indicate that Atlantic meridional overturning circulation (AMOC) variability is tightly linked to abrupt tropical North Atlantic (TNA) climate change through both atmospheric and oceanic processes. Although a slowdown of AMOC results in an atmospheric-induced surface cooling in the entire TNA, the subsurface experiences an even larger warming because of rapid reorganizations of ocean circulation patterns at intermediate water depths. Here, we reconstruct high-resolution temperature records using oxygen isotope values and Mg/Ca ratios in both surface- and subthermocline-dwelling planktonic foraminifera from a sediment core located in the TNA over the last 22 ky. Our results show significant changes in the vertical thermal gradient of the upper water column, with the warmest subsurface temperatures of the last deglacial transition corresponding to the onset of the Younger Dryas. Furthermore, we present new analyses of a climate model simulation forced with freshwater discharge into the North Atlantic under Last Glacial Maximum forcings and boundary conditions that reveal a maximum subsurface warming in the vicinity of the core site and a vertical thermal gradient change at the onset of AMOC weakening, consistent with the reconstructed record. Together, our proxy reconstructions and modeling results provide convincing evidence for a subsurface oceanic teleconnection linking high-latitude North Atlantic climate to the tropical Atlantic during periods of reduced AMOC across the last deglacial transition. PMID:22908256

Impact of abrupt deglacial climate change on tropical Atlantic subsurface temperatures.

PubMed

Schmidt, Matthew W; Chang, Ping; Hertzberg, Jennifer E; Them, Theodore R; Ji, Link; J, Link; Otto-Bliesner, Bette L

2012-09-04

Both instrumental data analyses and coupled ocean-atmosphere models indicate that Atlantic meridional overturning circulation (AMOC) variability is tightly linked to abrupt tropical North Atlantic (TNA) climate change through both atmospheric and oceanic processes. Although a slowdown of AMOC results in an atmospheric-induced surface cooling in the entire TNA, the subsurface experiences an even larger warming because of rapid reorganizations of ocean circulation patterns at intermediate water depths. Here, we reconstruct high-resolution temperature records using oxygen isotope values and Mg/Ca ratios in both surface- and subthermocline-dwelling planktonic foraminifera from a sediment core located in the TNA over the last 22 ky. Our results show significant changes in the vertical thermal gradient of the upper water column, with the warmest subsurface temperatures of the last deglacial transition corresponding to the onset of the Younger Dryas. Furthermore, we present new analyses of a climate model simulation forced with freshwater discharge into the North Atlantic under Last Glacial Maximum forcings and boundary conditions that reveal a maximum subsurface warming in the vicinity of the core site and a vertical thermal gradient change at the onset of AMOC weakening, consistent with the reconstructed record. Together, our proxy reconstructions and modeling results provide convincing evidence for a subsurface oceanic teleconnection linking high-latitude North Atlantic climate to the tropical Atlantic during periods of reduced AMOC across the last deglacial transition.

Phylogenetic Diversity of T4-Type Phages in Sediments from the Subtropical Pearl River Estuary

PubMed Central

He, Maoqiu; Cai, Lanlan; Zhang, Chuanlun; Jiao, Nianzhi; Zhang, Rui

2017-01-01

Viruses are an abundant and active component of marine sediments and play a significant role in microbial ecology and biogeochemical cycling at local and global scales. To obtain a better understanding of the ecological characteristics of the viriobenthos, the abundance and morphology of viruses and the diversity and community structure of T4-type phages were systematically investigated in the surface sediments of the subtropical Pearl River Estuary (PRE). Viral abundances ranged from 4.49 × 108 to 11.7 × 108 viruses/g and prokaryotic abundances ranged from 2.63 × 108 to 9.55 × 108 cells/g, and both decreased from freshwater to saltwater. Diverse viral morphotypes, including tailed, spherical, filamentous, and rod-shaped viruses, were observed using transmission electron microscopy. Analysis of the major capsid gene (g23) indicated that the sediment T4-type phages were highly diverse and, similar to the trend in viral abundances, their diversity decreased as the salinity increased. Phylogenetic analysis suggested that most of the g23 operational taxonomic units were affiliated with marine, paddy soil, and lake groups. The T4-type phage communities in freshwater and saltwater sediments showed obvious differences, which were related to changes in the Pearl River discharge. The results of this study demonstrated both allochthonous and autochthonous sources of the viral community in the PRE sediments and the movement of certain T4-type viral groups between the freshwater and saline water biomes. PMID:28572798

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balashov, Victor N.; Brantley, Susan L.; Guthrie, George D.

One idea for mitigating the increase in fossil- fuel generated carbon dioxide (CO 2) in the atmosphere is to inject CO 2 into subsurface saline sandstone reservoirs, thereby storing it in those geologic formations and out of the atmosphere.

CO2 leakage from carbon dioxide capture and storage (CCS) systems affects organic matter cycling in surface marine sediments.

PubMed

Rastelli, Eugenio; Corinaldesi, Cinzia; Dell'Anno, Antonio; Amaro, Teresa; Greco, Silvestro; Lo Martire, Marco; Carugati, Laura; Queirós, Ana M; Widdicombe, Stephen; Danovaro, Roberto

2016-12-01

Carbon dioxide capture and storage (CCS), involving the injection of CO 2 into the sub-seabed, is being promoted worldwide as a feasible option for reducing the anthropogenic CO 2 emissions into the atmosphere. However, the effects on the marine ecosystems of potential CO 2 leakages originating from these storage sites have only recently received scientific attention, and little information is available on the possible impacts of the resulting CO 2 -enriched seawater plumes on the surrounding benthic ecosystem. In the present study, we conducted a 20-weeks mesocosm experiment exposing coastal sediments to CO 2 -enriched seawater (at 5000 or 20,000 ppm), to test the effects on the microbial enzymatic activities responsible for the decomposition and turnover of the sedimentary organic matter in surface sediments down to 15 cm depth. Our results indicate that the exposure to high-CO 2 concentrations reduced significantly the enzymatic activities in the top 5 cm of sediments, but had no effects on subsurface sediment horizons (from 5 to 15 cm depth). In the surface sediments, both 5000 and 20,000 ppm CO 2 treatments determined a progressive decrease over time in the protein degradation (up to 80%). Conversely, the degradation rates of carbohydrates and organic phosphorous remained unaltered in the first 2 weeks, but decreased significantly (up to 50%) in the longer term when exposed at 20,000 ppm of CO 2 . Such effects were associated with a significant change in the composition of the biopolymeric carbon (due to the accumulation of proteins over time in sediments exposed to high-pCO 2 treatments), and a significant decrease (∼20-50% at 5000 and 20,000 ppm respectively) in nitrogen regeneration. We conclude that in areas immediately surrounding an active and long-lasting leak of CO 2 from CCS reservoirs, organic matter cycling would be significantly impacted in the surface sediment layers. The evidence of negligible impacts on the deeper sediments should be considered with caution and further investigated simulating the intrusion of CO 2 from a subsurface source, as occurring during real CO 2 leakages from CCS sites. Copyright © 2016 Elsevier Ltd. All rights reserved.

Evidence for sub-lacustrine volcanic activity in Lake Bolsena (central Italy) revealed by high resolution seismic data sets

NASA Astrophysics Data System (ADS)

Lindhorst, Katja; Krastel, Sebastian; Wagner, Bernd; Schuerer, Anke

2017-06-01

The Bolsena caldera that formed between 0.6 and 0.2 Ma has a well preserved structural rim, which makes it an ideal site to study the tectonic and volcanic evolution of calderas. However, the main area is covered by a 150 m deep lake which makes it rather difficult to investigate the subsurface structure directly. To overcome this problem new high resolution hydro-acoustic surveys using a multichannel reflection seismic system and a sediment echo-sounder system were conducted in September 2012. As space was limited we used a rowing boat towed by a rubber boat to handle a 36 m long and 24 channel streamer to receive seismic reflections produced using a Mini GI-Gun (0.25 l). The subsurface structure of Lake Bolsena was imaged up to a sediment depth of 190 m, which is estimated to have filled over a period of 333 kyrs. However, massive pyroclastic flow deposits found in the deeper parts of the basin indicate an initial infill of volcanic deposits from two adjacent younger calderas, the Latera (W) and Montefiascone (SE) calderas. Our data suggest that the caldera has a long history of active volcanism, because the lacustrine sediments show post-sedimentary influences of geothermal fluids. We mapped several mound structures at various stratigraphic depths. Two volcanic structures outcrop at the modern lake surface implying recent activity. One of these structures is hardly covered by sediments and has a crater-like feature in its summit. The other structure shows a pockmark-like depression on top. Another observable feature is a partially sediment filled crater located in the western part of the lake which further implies the existence of a magma chamber located beneath the Bolsena caldera. Since the late Pleistocene and Holocene, the sedimentation was mainly hemipelagic evidenced by a sediment drape of up to 10 m thick sediment drape on the uppermost sediments. Beneath the drape we found evidence for a distal tephra layer likely related to an explosive eruption from the Campanian Volcanic Province occurring as the Neapolitan Yellow Tuff. Our new geophysical data set is a valuable record with a potential to constrain the sedimentary and volcanic evolution of the Vulsini Volcanic District in areas that have not been assessed previously due to logistical challenges of conducting surveys in water-filled settings.

Contrasting styles of large-scale displacement of unconsolidated sand: examples from the early Jurassic Navajo Sandstone on the Colorado Plateau, USA

NASA Astrophysics Data System (ADS)

Bryant, Gerald

2015-04-01

Large-scale soft-sediment deformation features in the Navajo Sandstone have been a topic of interest for nearly 40 years, ever since they were first explored as a criterion for discriminating between marine and continental processes in the depositional environment. For much of this time, evidence for large-scale sediment displacements was commonly attributed to processes of mass wasting. That is, gravity-driven movements of surficial sand. These slope failures were attributed to the inherent susceptibility of dune sand responding to environmental triggers such as earthquakes, floods, impacts, and the differential loading associated with dune topography. During the last decade, a new wave of research is focusing on the event significance of deformation features in more detail, revealing a broad diversity of large-scale deformation morphologies. This research has led to a better appreciation of subsurface dynamics in the early Jurassic deformation events recorded in the Navajo Sandstone, including the important role of intrastratal sediment flow. This report documents two illustrative examples of large-scale sediment displacements represented in extensive outcrops of the Navajo Sandstone along the Utah/Arizona border. Architectural relationships in these outcrops provide definitive constraints that enable the recognition of a large-scale sediment outflow, at one location, and an equally large-scale subsurface flow at the other. At both sites, evidence for associated processes of liquefaction appear at depths of at least 40 m below the original depositional surface, which is nearly an order of magnitude greater than has commonly been reported from modern settings. The surficial, mass flow feature displays attributes that are consistent with much smaller-scale sediment eruptions (sand volcanoes) that are often documented from modern earthquake zones, including the development of hydraulic pressure from localized, subsurface liquefaction and the subsequent escape of fluidized sand toward the unconfined conditions of the surface. The origin of the forces that produced the lateral, subsurface movement of a large body of sand at the other site is not readily apparent. The various constraints on modeling the generation of the lateral force required to produce the observed displacement are considered here, along with photodocumentation of key outcrop relationships.

Sulfur and iron cycling in deep-subsurface, coal bed-containing sediments off Shimokita (Japan)

NASA Astrophysics Data System (ADS)

Riedinger, N.; Smirnoff, M. N.; Gilhooly, W.; Phillips, S. C.; Lyons, T. W.; 337 Scientific Party, I.

2013-12-01

The main goal of IODP Expedition 337 was the identification and characterization of the deep coal bed biosphere and hydrocarbon system off the Shimokita Peninsula (Japan) in the northwestern Pacific using the D/V Chikyu. To accomplish this scientific objective, it was also necessary to investigate the inorganic biogeochemistry in order to identify possible electron acceptors and bio-essential nutrients. These biogeochemical parameters greatly influence both, the composition and abundance of microbial communities as well as the organic carbon cycle. In turn, the microbially mediated carbon cycle influences the diagenetic reactions in the subsurface, thus, altering geochemical and physical characteristics of the material. Here we present results from metal and sulfur geochemical analyses from the deep-subsurface sediments (about 1250 to 2466 mbsf) at Site C0020 off Shimokita. The measured concentrations of acid volatile sulfur (AVS) as well as chromium reducible sulfur (CRS) reflect the alteration of iron oxides to iron sulfides and indicate that the main sulfur-bearing phase in the investigated sediments is pyrite. Concentrations of intermediate sulfur species are minor and occur mainly in the coal-bearing interval. Our data show that the uppermost sediments contain higher amounts of pyrite (up to 1.2 wt.%) with an average of 0.5 wt.% compared to the deeper deposits (below about 1800 mbsf), which show an average of 0.16 wt.%. In contrast, iron oxide concentrations are highest in the deeper sediment sections (up to 0.4%), where pyrite concentrations are low. The alteration of iron oxides to sulfides in theses lower section was probably governed by the amount of available sulfide in the pore water. The occurrence of (bio-)reactive iron phases in these deeply buried sediments has implications for the deep biosphere as those minerals have the potential to serve as electron acceptors during burial, including reactions involving deep sourced electron donors, such as hydrogen and methane - related to the coal bed as the potential source. Thus, the deep subsurface coal beds off Shimokita provide an ideal environment to investigate microbial and metal interactions under extreme conditions.

Geochemical and geophysical examination of submarine groundwater discharge and associated nutrient loading estimates into Lynch Cove, Hood Canal, WA

USGS Publications Warehouse

Swarzenski, P.W.; Simonds, F.W.; Paulson, A.J.; Kruse, S.; Reich, C.

2007-01-01

Geochemical tracer data (i.e., 222Rn and four naturally occurring Ra isotopes), electromagnetic (EM) seepage meter results, and high-resolution, stationary electrical resistivity images were used to examine the bi-directional (i.e., submarine groundwater discharge and recharge) exchange of a coastal aquifer with seawater. Our study site for these experiments was Lynch Cove, the terminus of Hood Canal, WA, where fjord-like conditions dramatically limit water column circulation that can lead to recurring summer-time hypoxic events. In such a system a precise nutrient budget may be particularly sensitive to groundwater-derived nutrient loading. Shore-perpendicular time-series subsurface resistivity profiles show clear, decimeter-scale tidal modulation of the coastal aquifer in response to large, regional hydraulic gradients, hydrologically transmissive glacial terrain, and large (4-5 m) tidal amplitudes. A 5-day 222Rn time-series shows a strong inverse covariance between 222Rn activities (0.5−29 dpm L-1) and water level fluctuations, and provides compelling evidence for tidally modulated exchange of groundwater across the sediment/water interface. Mean Rn-derived submarine groundwater discharge (SGD) rates of 85 ± 84 cm d-1 agree closely in the timing and magnitude with EM seepage meter results that showed discharge during low tide and recharge during high tide events. To evaluate the importance of fresh versus saline SGD, Rn-derived SGD rates (as a proxy of total SGD) were compared to excess 226Ra-derived SGD rates (as a proxy for the saline contribution of SGD). The calculated SGD rates, which include a significant (>80%) component of recycled seawater, are used to estimate associated nutrient (NH4+, Si, PO43-, NO3 + NO2, TDN) loads to Lynch Cove. The dissolved inorganic nitrogen (DIN = NH4 + NO2 + NO3) SGD loading estimate of 5.9 × 104 mol d-1 is 1−2 orders of magnitude larger than similar estimates derived from atmospheric deposition and surface water runoff, respectively.

Spatial Distribution of an Uranium-Respiring Betaproteobacterium at the Rifle, CO Field Research Site

PubMed Central

Koribanics, Nicole M.; Tuorto, Steven J.; Lopez-Chiaffarelli, Nora; McGuinness, Lora R.; Häggblom, Max M.; Williams, Kenneth H.; Long, Philip E.; Kerkhof, Lee J.

2015-01-01

The Department of Energy’s Integrated Field-Scale Subsurface Research Challenge Site (IFRC) at Rifle, Colorado was created to address the gaps in knowledge on the mechanisms and rates of U(VI) bioreduction in alluvial sediments. Previous studies at the Rifle IFRC have linked microbial processes to uranium immobilization during acetate amendment. Several key bacteria believed to be involved in radionuclide containment have been described; however, most of the evidence implicating uranium reduction with specific microbiota has been indirect. Here, we report on the cultivation of a microorganism from the Rifle IFRC that reduces uranium and appears to utilize it as a terminal electron acceptor for respiration with acetate as electron donor. Furthermore, this bacterium constitutes a significant proportion of the subsurface sediment community prior to biostimulation based on TRFLP profiling of 16S rRNA genes. 16S rRNA gene sequence analysis indicates that the microorganism is a betaproteobacterium with a high similarity to Burkholderia fungorum. This is, to our knowledge, the first report of a betaproteobacterium capable of uranium respiration. Our results indicate that this microorganism occurs commonly in alluvial sediments located between 3-6 m below ground surface at Rifle and may play a role in the initial reduction of uranium at the site. PMID:25874721

Spatial distribution of an uranium-respiring betaproteobacterium at the Rifle, CO field research site

DOE PAGES

Koribanics, Nicole M.; Tuorto, Steven J.; Lopez-Chiaffarelli, Nora; ...

2015-04-13

The Department of Energy’s Integrated Field-Scale Subsurface Research Challenge Site (IFRC) at Rifle, Colorado was created to address the gaps in knowledge on the mechanisms and rates of U(VI) bioreduction in alluvial sediments. Previous studies at the Rifle IFRC have linked microbial processes to uranium immobilization during acetate amendment. Several key bacteria believed to be involved in radionuclide containment have been described; however, most of the evidence implicating uranium reduction with specific microbiota has been indirect. Here, we report on the cultivation of a microorganism from the Rifle IFRC that reduces uranium and appears to utilize it as a terminalmore » electron acceptor for respiration with acetate as electron donor. Furthermore, this bacterium constitutes a significant proportion of the subsurface sediment community prior to biostimulation based on TRFLP profiling of 16S rRNA genes. 16S rRNA gene sequence analysis indicates that the microorganism is a betaproteobacterium with a high similarity to Burkholderia fungorum. This is, to our knowledge, the first report of a betaproteobacterium capable of uranium respiration. Our results indicate that this microorganism occurs commonly in alluvial sediments located between 3-6 m below ground surface at Rifle and may play a role in the initial reduction of uranium at the site.« less

MEASURING THE ACUTE TOXICITY OF ESTUARINE SEDIMENTS

EPA Science Inventory

Estuarine sediments frequently are repositories and sources of anthropogenic contaminants. Toxicity is one method of assessing the environmental quality of sediments, yet because of the extreme range of salinities that characterize estuaries few infaunal organisms have both the p...

MOBILIZATION AND CHARACTERIZATION OF COLLOIDS GENERATED FROM CEMENT LEACHATES MOVING THROUGH A SRS SANDY SEDIMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, D.; Roberts, K.; Kaplan, D.

Naturally occurring mobile colloids are ubiquitous and are involved in many important processes in the subsurface zone. For example, colloid generation and subsequent mobilization represent a possible mechanism for the transport of contaminants including radionuclides in the subsurface environments. For colloid-facilitated transport to be significant, three criteria must be met: (1) colloids must be generated; (2) contaminants must associate with the colloids preferentially to the immobile solid phase (aquifer); and (3) colloids must be transported through the groundwater or in subsurface environments - once these colloids start moving they become 'mobile colloids'. Although some experimental investigations of particle release inmore » natural porous media have been conducted, the detailed mechanisms of release and re-deposition of colloidal particles within natural porous media are poorly understood. Even though this vector of transport is known, the extent of its importance is not known yet. Colloid-facilitated transport of trace radionuclides has been observed in the field, thus demonstrating a possible radiological risk associated with the colloids. The objective of this study was to determine if cementitious leachate would promote the in situ mobilization of natural colloidal particles from a SRS sandy sediment. The intent was to determine whether cementitious surface or subsurface structure would create plumes that could produce conditions conducive to sediment dispersion and mobile colloid generation. Column studies were conducted and the cation chemistries of influents and effluents were analyzed by ICP-OES, while the mobilized colloids were characterized using XRD, SEM, EDX, PSD and Zeta potential. The mobilization mechanisms of colloids in a SRS sandy sediment by cement leachates were studied.« less

PROTOZOA IN SUBSURFACE SEDIMENTS FROM SITE CONTAMI- NATED WITH AVIATION GASOLINE OR JET FUEL

EPA Science Inventory

Numbers of protozoa in the subsurface of aviation gasoline and jet fuel spill areas at a Coast Guard base at Traverse City, Mich., were determined. Boreholes were drilled in an uncontaminated location, in contaminated but untreated parts of the fuel plumes, and in the aviation ga...

Influence Of pH On The Transport Of Nanoscale Zinc Oxide In Saturated Porous Media

EPA Science Inventory

Widespread use of nanoscale zinc oxide (nZnO) in various fields causes subsurface environment contamination. Even though the transport of dissolved zinc ions in subsurface environments such as soils and sediments has been widely studied, the transport mechanism of nZnO in such e...

Authigenic apatite and octacalcium phosphate formation due to adsorption-precipitation switching across estuarine salinity gradients

NASA Astrophysics Data System (ADS)

Oxmann, J. F.; Schwendenmann, L.

2015-02-01

Mechanisms governing phosphorus (P) speciation in coastal sediments remain largely unknown due to the diversity of coastal environments and poor analytical specificity for P phases. We investigated P speciation across salinity gradients comprising diverse ecosystems in a P-enriched estuary. To determine P load effects on P speciation we compared the high P site with a low P site. Octacalcium phosphate (OCP), authigenic apatite (carbonate fluorapatite, CFAP) and detrital apatite (fluorapatite) were quantitated in addition to Al/Fe-bound P (Al/Fe-P) and Ca-bound P (Ca-P). Gradients in sediment pH strongly affected P fractions across ecosystems and independent of the site-specific total P status. We found a pronounced switch from adsorbed Al/Fe-P to mineral Ca-P with decreasing acidity from land to sea. This switch occurred at near-neutral sediment pH and has possibly been enhanced by redox-driven phosphate desorption from iron oxyhydroxides. The seaward decline in Al/Fe-P was counterbalanced by the precipitation of Ca-P. Correspondingly, two location-dependent accumulation mechanisms occurred at the high P site due to the switch, leading to elevated Al/Fe-P at pH < 6.6 (landward; adsorption) and elevated Ca-P at pH > 6.6 (seaward; precipitation). Enhanced Ca-P precipitation by increased P loads was also evident from disproportional accumulation of metastable Ca-P (Ca-Pmeta) at the high P site. Here, sediments contained on average 6-fold higher Ca-Pmeta levels compared with the low P site, although these sediments contained only 2-fold more total Ca-P than the low P sediments. Phosphorus species distributions indicated that these elevated Ca-Pmeta levels resulted from transformation of fertilizer-derived Al/Fe-P to OCP and CFAP in nearshore areas. Formation of CFAP as well as its precursor, OCP, results in P retention in coastal zones and can thus lead to substantial inorganic P accumulation in response to anthropogenic P input.

Ancient ice islands in salt lakes of the Central Andes

USGS Publications Warehouse

Hurlbert, S.H.; Chang, Cecily C.Y.

1984-01-01

Massive blocks of freshwater ice and frozen sediments protrude from shallow, saline lakes in the Andes of southwestern Bolivia and northeastern Chile. These ice islands range up to 1.5 kilometers long, stand up to 7 meters above the water surface, and may extend out tens of meters and more beneath the unfrozen lake sediments. The upper surfaces of the islands are covered with dry white sediments, mostly aragonite or calcite. The ice blocks may have formed by freezing of the fresh pore water of lake sediments during the "little ice age." The largest blocks are melting rapidly because of possibly recent increases in geothermal heat flux through the lake bottom and undercutting by warm saline lake water during the summer.

Biodegradation of organic compounds in vadose zone and aquifer sediments.

PubMed Central

Konopka, A; Turco, R

1991-01-01

The microbial processes that occur in the subsurface under a typical Midwest agricultural soil were studied. A 26-m bore was installed in November of 1988 at a site of the Purdue University Agronomy Research Center. Aseptic collections of soil materials were made at 17 different depths. Physical analysis indicated that the site contained up to 14 different strata. The site materials were primarily glacial tills with a high carbonate content. The N, P, and organic C contents of sediments tended to decrease with depth. Ambient water content was generally less than the water content, which corresponds to a -0.3-bar equivalent. No pesticides were detected in the samples, and degradation of added 14C-labeled pesticides (atrazine and metolachlor) was not detected in slurry incubations of up to 128 days. The sorption of atrazine and metolachlor was correlated with the clay content of the sediments. Microbial biomass (determined by direct microscopic count, viable count, and phospholipid assay) in the tills was lower than in either the surface materials or the aquifer located at 25 m. The biodegradation of glucose and phenol occurred rapidly and without a lag in samples from the aquifer capillary fringe, saturated zone, and surface soils. In contrast, lag periods and smaller biodegradation rates were found in the till samples. Subsurface sediments are rich in microbial numbers and activity. The most active strata appear to be transmissive layers in the saturated zone. This implies that the availability of water may limit activity in the profile. PMID:1768098

Selenium and trace element mobility affected by periodic displacement of stratification in the Great Salt Lake, Utah

USGS Publications Warehouse

Beisner, K.; Naftz, D.L.; Johnson, W.P.; Diaz, X.

2009-01-01

The Great Salt Lake (GSL) is a unique ecosystem in which trace element activity cannot be characterized by standard geochemical parameters due to the high salinity. Movement of selenium and other trace elements present in the lake bed sediments of GSL may occur due to periodic stratification displacement events or lake bed exposure. The water column of GSL is complicated by the presence of a chemocline persistent over annual to decadal time scales. The water below the chemocline is referred to as the deep brine layer (DBL), has a high salinity (16.5 to 22.9%) and is anoxic. The upper brine layer (UBL) resides above the chemocline, has lower salinity (12.6 to 14.7%) and is oxic. Displacement of the DBL may involve trace element movement within the water column due to changes in redox potential. Evidence of stratification displacement in the water column has been observed at two fixed stations on the lake by monitoring vertical water temperature profiles with horizontal and vertical velocity profiles. Stratification displacement events occur over periods of 12 to 24 h and are associated with strong wind events that can produce seiches within the water column. In addition to displacement events, the DBL shrinks and expands in response to changes in the lake surface area over a period of months. Laboratory tests simulating the observed sediment re-suspension were conducted over daily, weekly and monthly time scales to understand the effect of placing anoxic bottom sediments in contact with oxic water, and the associated effect of trace element desorption and (or) dissolution. Results from the laboratory simulations indicate that a small percentage (1%) of selenium associated with anoxic bottom sediments is periodically solubilized into the UBL where it potentially can be incorporated into the biota utilizing the oxic part of GSL.

Benthic foraminifera as indicators of hydrologic and environmental conditions in the Ross Sea (Antarctica)

NASA Astrophysics Data System (ADS)

Bertoni, E.; Bertello, L.; Capotondi, L.; Bergami, C.; Giglio, F.; Ravaioli, M.; Rossi, C.; Ferretti, A.

2012-04-01

This study, present data on benthic foraminiferal assemblages from four box cores collected in different areas of the Ross Sea during the 2005 oceanographic cruise in the framework of the Italian Antarctic Research National Programme (PNRA). Based on magnetic susceptibility, biosiliceous content, and micropaleontological analysis, the sediment cores provide a record of glacial retreat and Holocene environmental changes in the Ross Sea during the last 11 kyr BP. Sediment lithologies range between diamicton to surficial diatomaceous mud, the intermediate levels being glacial-marine sediment. The sedimentary sections include diatomaceous glacial-marine deposit over transitional (proximal grounding zone) glacial-marine sediment. The study revealed that the Ross Sea contains typical Antarctic foraminifera fauna with the dominance of agglutinated taxa. Relatively elevated abundances, richness and diversity were common in the northernmost site, where the water column was characterized by relatively warmer intermediate waters and by the presence of the colder High Salinity Shelf Water (HSSW) occupying the deepest part of the basin. Here, the assemblage was dominated by Miliammina arenacea and the more abundant species were Trochammina quadricamerata and Lagenammina difflugiformis. In the southernmost site and in the eastern Ross Sea, richness and diversity were low and the most significant species were Trochammina sp., and Reophax sp. M. arenacea was ubiquitous in all the samples and sites, confirming its tolerance to cold corrosive bottom waters and salinity fluctuations as well as its uniquely high preservation potential. Moreover, elevated abundances, richness and diversity were common in the upper portion of the core which represents the youngest climatic phase characterized by the presence of some calcareous specimens too. This may indicate a deeper Carbonate Compensation Depth, probably due to relatively stable and warmer environmental conditions. Results document that diversity of benthic foraminifera, number of specimens and variations in test morphology are related to regional differences in water properties (temperature, salinity, carbonate chemistry).

Reactive iron and manganese in estuarine sediments of the Baltic Sea: Impacts of flocculation and redox shuttling

NASA Astrophysics Data System (ADS)

Jilbert, Tom; Tiihonen, Rosa; Myllykangas, Jukka-Pekka; Asmala, Eero; Hietanen, Susanna

2016-04-01

Iron (Fe) and manganese (Mn) play important roles in sedimentary carbon cycling in both freshwater and marine systems. Dissimilatory reduction of Fe and Mn oxides is known to be a major pathway of suboxic organic matter remineralization in surface sediments, while recent studies have shown that Fe and Mn oxides may be involved in the anaerobic oxidation of methane deeper in the sediment column (e.g., Egger et al., 2015). Estuaries are transitional environments, characterized by gradients of salinity and redox conditions which impact on the mobility of Fe and Mn. In turn, the distribution of Fe and Mn in estuarine sediments, and the role of the two metals in carbon cycling, is expected to be spatially heterogeneous. However, few studies have attempted to describe the sedimentary distribution of Fe and Mn in the context of processes occurring in the estuarine water column. In particular, salinity-driven flocculation and redox shuttling are two key processes whose relative impacts on sedimentary Fe and Mn have not been clearly demonstrated. In this study we investigated the coupled water column and sedimentary cycling of Fe and Mn along a 60km non-tidal estuarine transect in the Gulf of Finland, Baltic Sea. We show that riverine Fe entering the estuary as colloidal oxides associated with dissolved organic matter (DOM) is quickly flocculated and sedimented within 5 km of the river mouth, despite the shallow lateral salinity gradient. Sediments within this range are enriched in Fe (up to twice the regional average), principally in the form of crystalline Fe oxides as determined by sequential extractions. The high crystallinity implies relative maturity of the oxide mineralogy, likely due to sustained oxic conditions and long residence time in the river catchment. Despite the reducing conditions below the sediment-water interface, Fe is largely retained in the sediments close to the river mouth. In contrast, sedimentary Mn concentrations are highest in a deep silled basin more than 10km downstream. Throughout the estuary, Mn oxides are reductively dissolved shallower in the sediment column than Fe oxides, resulting in strong effluxes of dissolved Mn from the sediments. Subsequent oxidation of bottom water dissolved Mn to particulate oxides and lateral transport ("redox shuttling") account for the sedimentary Mn enrichments in the deep silled basin. Porewater data suggest that the heterogeneity of Fe and Mn availability in the estuarine sediments may influence the relative importance of the two metals for anaerobic oxidation of methane. Egger, M. et al., Environmental Science and Technology 49(1), 277-283, 2015.

Spatially Detailed Porosity Prediction From Airborne Electromagnetics and Sparse Borehole Fluid Sampling

NASA Astrophysics Data System (ADS)

Macnae, J.; Ley-Cooper, Y.

2009-05-01

Sub-surface porosity is of importance in estimating fluid contant and salt-load parameters for hydrological modelling. While sparse boreholes may adequately sample the depth to a sub-horizontal water-table and usually also adequately sample ground-water salinity, they do not provide adequate sampling of the spatial variations in porosity or hydraulic permeability caused by spatial variations in sedimentary and other geological processes.. We show in this presentation that spatially detailed porosity can be estimated by applying Archie's law to conductivity estimates from airborne electromagnetic surveys with interpolated ground-water conductivity values. The prediction was tested on data from the Chowilla flood plain in the Murray-Darling Basin of South Australia. A frequency domain, helicopter-borne electromagnetic system collected data at 6 frequencies and 3 to 4 m spacings on lines spaced 100 m apart. This data was transformed into conductivity-depth sections, from which a 3D bulk-conductivity map could be created with about 30 m spatial resolution and 2 to 5 m vertical depth resolution. For that portion of the volume below the interpolated water-table, we predicted porosity in each cell using Archie's law. Generally, predicted porosities were in the 30 to 50 % range, consistent with expectations for the partially consolidated sediments in the floodplain. Porosities were directly measured on core from eight boreholes in the area, and compared quite well with the predictions. The predicted porosity map was spatially consistent, and when combined with measured salinities in the ground water, was able to provide a detailed 3D map of salt-loads in the saturated zone, and as such contribute to a hazard assessment of the saline threat to the river.

Sediment transport and Hg recovery in Lavaca Bay, as evaluated from radionuclide and Hg distributions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Santschi, P.H.; Allison, M.A.; Asbill, S.

1999-02-01

Mercury was released in the late 1960s from a chloralkali facility managed by ALCOA and deposited into sediments of Lavaca Bay, TX. Sediments have recorded this event as a well-defined subsurface concentration maximum. Radionuclide, mercury, X-radiography, and grain size data from sediment cores taken in 1997 at 15 stations in Lavaca bay were used to assess sediment and Hg movements in the bay. Sediment accumulation rates were calculated from bomb fallout nuclide ({sup 137}Cs, {sup 239,240}Pu) peaks in 1963 and from the steady-state delivery of {sup 210}Pb from the atmosphere. Sedimentation rates are highest at near-shore sites near the ALCOAmore » facility and generally decrease away from shore. Sedimentation rates in some areas are likely influenced by anthropogenic activities such as dredging. Particle reworking, as assessed from {sup 7}Be measurements, is generally restricted to the upper 2--7 cm of sediments. Numerical simulations of Hg profiles using measured sedimentation and mixing parameters indicate that at most sites high remnant mercury concentrations at 15--60 cm depth cannot supply substantial amounts of Hg to surface sediments. Assuming no future Hg supplies, Hg concentrations in surface sediments are predicted to decrease exponentially with a recovery half-time of 4 {+-} 2 years.« less

Open inlet conversion: Water quality benefits of two designs

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for movement of sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine the reduction in drainage effluent total suspended sediment (TSS) and phosphorus (P) concentr...

Recruitment from an egg bank into the plankton in Baisha Bay, a mariculture base in Southern China

NASA Astrophysics Data System (ADS)

Wang, Qing; Luan, Lei-Lei; Chen, Liang-Dong; Yuan, Dan-Ni; Liu, Sheng; Hwang, Jiang-Shiou; Yang, Yu-Feng

2016-11-01

The potential recruitment of resting eggs of calanoid copepods and rotifers to planktonic populations was investigated in the surface and sub-surface sediments of three mariculture zones: an integrated seaweed Gracilaria lemaneiformis and shellfish cultivation area (G), a fish cultivation area (F), and a shellfish cultivation area (S), as well as the sediments of a nearby control sea area (C) in a mariculture base in Southern China. The potential recruitment of copepod and rotifer eggs in the sediments of C and G was significantly higher than in F and S. Potential recruitment in the sub-surface sediments of F and S was not observed, suggesting that fish and shellfish mariculture may be responsible for this decrease. The hatching success of resting eggs of copepods and rotifers was affected by mariculture type, and that large-scale seaweed cultivation may offset the adverse effect of fish and shellfish cultivation on the resting eggs if integrated cultivation is adopted.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

DOE PAGES

Castelle, Cindy J.; Hug, Laura A.; Wrighton, Kelly C.; ...

2013-08-27

Microorganisms in the subsurface represent a substantial but poorly understood component of the Earth’s biosphere. Subsurface environments are complex and difficult to characterize; thus, their microbiota have remained as a ‘dark matter’ of the carbon and other biogeochemical cycles. Here we deeply sequence two sediment-hosted microbial communities from an aquifer adjacent to the Colorado River, CO, USA. No single organism represents more than ~1% of either community. Remarkably, many bacteria and archaea in these communities are novel at the phylum level or belong to phyla lacking a sequenced representative. The dominant organism in deeper sediment, RBG-1, is a member ofmore » a new phylum. On the basis of its reconstructed complete genome, RBG-1 is metabolically versatile. Its wide respiration-based repertoire may enable it to respond to the fluctuating redox environment close to the water table. We document extraordinary microbial novelty and the importance of previously unknown lineages in sediment biogeochemical transformations.« less

Effect of dredge spoil deposition on fecal coliform counts in sediments at a disposal site.

PubMed Central

Babinchak, J A; Graikoski, J T; Dudley, S; Nitkowski, M F

1977-01-01

The most-probable-number of fecal coliforms in sediments was monitored at the New London dump site in Long Island Sound during the deposition of dredge spoil from the Thames River. Although the geometric mean for fecal coliforms at five stations in the river was 14,000/100 ml before dredging commenced, the deposition of this material did not increase the incidence of fecal coliforms at 17 spoil stations and 13 control stations in the disposal and surrounding areas. Fecal coliforms appear to occur only in the surface sediment material and are diluted by the subsurface material during the dredging operation. Fecal coliform analyses of bottom waters during high and low tides indicated that the flow of water from the Thames River played a major role in determining the most-probable-number of fecal coliforms in the sediments at the disposal site. PMID:329761

Immobilization of U(VI) from oxic groundwater by Hanford 300 Area sediments and effects of Columbia River water.

PubMed

Ahmed, Bulbul; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk

2012-09-01

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of: 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (∼7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (∼93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site. Copyright © 2012 Elsevier Ltd. All rights reserved.

Macrofaunal recolonization of copper-contaminated sediments in San Diego Bay.

PubMed

Neira, Carlos; Mendoza, Guillermo; Porrachia, Magali; Stransky, Chris; Levin, Lisa A

2015-12-30

Effects of Cu-loading on macrofaunal recolonization were examined in Shelter Island Yacht Basin (San Diego Bay, California). Sediments with high and low Cu levels were defaunated and Cu-spiked, translocated, and then placed back into the environment. These demonstrated that the alteration observed in benthic communities associated with Cu contamination occurs during initial recolonization. After a 3-month exposure to sediments with varying Cu levels, two primary colonizing communities were identified: (1) a "mouth assemblage" resembling adjacent background fauna associated with low-Cu levels that was more diverse and predominantly dominated by surface- and subsurface-deposit feeders, burrowers, and tube builders, and (2) a "head assemblage" resembling adjacent background fauna associated with high-Cu concentrations, with few dominant species and an increasing importance of carnivores and mobile epifauna. Cu loading can cause reduced biodiversity and lower structural complexity that may last several months if high concentrations persist, with a direct effect on community functioning. Copyright © 2015 Elsevier Ltd. All rights reserved.

Assessment of crude oil biodegradation in arctic seashore sediments: effects of temperature, salinity, and crude oil concentration.

PubMed

Sharma, Priyamvada; Schiewer, Silke

2016-08-01

The expected increase in offshore oil exploration and production in the Arctic may lead to crude oil spills along arctic shorelines. To evaluate the potential effectiveness of bioremediation to treat such spills, oil spill bioremediation in arctic sediments was simulated in laboratory microcosms containing beach sediments from Barrow (Alaska), spiked with North Slope Crude, and incubated at varying temperatures and salinities. Biodegradation was measured via respiration rates (CO2 production); volatilization was quantified by gas chromatography/mass spectrophotometry (GC/MS) analysis of hydrocarbons sorbed to activated carbon, and hydrocarbons remaining in the sediment were quantified by GC/flame ionization detector (FID). Higher temperature leads to increased biodegradation by naturally occurring microorganisms, while the release of volatile organic compounds was similar at both temperatures. Increased salinity had a small positive impact on crude oil removal. At higher crude oil dosages, volatilization increased, however CO2 production did not. While only a small percentage of crude oil was completely biodegraded, a larger percentage was volatilized within 6-9 weeks.

An analytical solution for predicting the transient seepage from a subsurface drainage system

NASA Astrophysics Data System (ADS)

Xin, Pei; Dan, Han-Cheng; Zhou, Tingzhang; Lu, Chunhui; Kong, Jun; Li, Ling

2016-05-01

Subsurface drainage systems have been widely used to deal with soil salinization and waterlogging problems around the world. In this paper, a mathematical model was introduced to quantify the transient behavior of the groundwater table and the seepage from a subsurface drainage system. Based on the assumption of a hydrostatic pressure distribution, the model considered the pore-water flow in both the phreatic and vadose soil zones. An approximate analytical solution for the model was derived to quantify the drainage of soils which were initially water-saturated. The analytical solution was validated against laboratory experiments and a 2-D Richards equation-based model, and found to predict well the transient water seepage from the subsurface drainage system. A saturated flow-based model was also tested and found to over-predict the time required for drainage and the total water seepage by nearly one order of magnitude, in comparison with the experimental results and the present analytical solution. During drainage, a vadose zone with a significant water storage capacity developed above the phreatic surface. A considerable amount of water still remained in the vadose zone at the steady state with the water table situated at the drain bottom. Sensitivity analyses demonstrated that effects of the vadose zone were intensified with an increased thickness of capillary fringe, capillary rise and/or burying depth of drains, in terms of the required drainage time and total water seepage. The analytical solution provides guidance for assessing the capillary effects on the effectiveness and efficiency of subsurface drainage systems for combating soil salinization and waterlogging problems.

Geomorphic factors related to the persistence of subsurface oil from the Exxon Valdez oil spill

USGS Publications Warehouse

Nixon, Zachary; Michel, Jacqueline; Hayes, Miles O.; Irvine, Gail V.; Short, Jeffrey

2013-01-01

Oil from the 1989 Exxon Valdez oil spill has persisted along shorelines of Prince William Sound, Alaska, for more than two decades as both surface and subsurface oil residues. To better understand the distribution of persistent subsurface oil and assess the potential need for further restoration, a thorough and quantitative understanding of the geomorphic factors controlling the presence or absence of subsurface oil is required. Data on oiling and geomorphic features were collected at 198 sites in Prince William Sound to identify and quantify the relationships among these geomorphic factors and the presence and absence of persistent subsurface oil. Geomorphic factors associated with the presence of subsurface oil were initial oil exposure, substrate permeability, topographic slope, low exposure to waves, armoring on gravel beaches, tombolos, natural breakwaters, and rubble accumulations. Geomorphic factors associated with the absence of subsurface oil were impermeable bedrock; platforms with thin sediment veneer; fine-grained, well-sorted gravel beaches with no armor; and low-permeability, raised bay-bottom beaches. Relationships were found between the geomorphic and physical site characteristics and the likelihood of encountering persistent subsurface oiling at those sites. There is quantitative evidence of more complex interactions between the overall wave energy incident at a site and the presence of fine-scale geomorphic features that may have provided smaller, local wave energy sheltering of oil. Similarly, these data provide evidence for interactions between the shoreline slope and the presence of angular rubble, with decreased likelihood for encountering subsurface oil at steeply sloped sites except at high-angle sheltered rubble shoreline locations. These results reinforce the idea that the interactions of beach permeability, stability, and site-specific wave exposure are key drivers for subsurface oil persistence in exposed and intermittently exposed mixed gravel beach and rocky shoreline environments.

Hydrology of the solid waste burial ground as related to potential migration of radionuclides, Idaho National Engineering Laboratory

USGS Publications Warehouse

Barraclough, Jack T.; Robertson, J.B.; Janzer, V.J.; Saindon, L.G.

1976-01-01

A study was made (1970-1974) to evaluate the geohydrologic and geochemical controls on subsurface migration of radionuclides from pits and trenches in the Idaho National Engineering Laboratory (INEL) solid waste burial ground and to determine the existence and extent of radionuclide migration from the burial ground. A total of about 1,700 sediment, rock, and water samples were collected from 10 observation wells drilled in and near the burial ground of Idaho National Engineering Laboratory, formerly the National Reactor Testing Station (NRTS). Within the burial ground area, the subsurface rocks are composed principally of basalt. Wind- and water-deposited sediments occur at the surface and in beds between the thicker basalt zones. Two principal sediment beds occur at about 110 feet and 240 feet below the land surface. The average thickness of the surficial sedimentary layer is about 15 feet while that of the two principal subsurface layers is 13 and 14 feet, respectively. The water table in the aquifer beneath the burial ground is at a depth of about 580 feet. Fission, activation, and transuranic elements were detected in some of the samples from the 110- and 240-foot sedimentary layers. (Woodard-USGS)

The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake

PubMed Central

Eichmiller, Jessica J.; Bajer, Przemyslaw G.; Sorensen, Peter W.

2014-01-01

Although environmental DNA (eDNA) has been used to infer the presence of rare aquatic species, many facets of this technique remain unresolved. In particular, the relationship between eDNA and fish distribution is not known. We examined the relationship between the distribution of fish and their eDNA (detection rate and concentration) in a lake. A quantitative PCR (qPCR) assay for a region within the cytochrome b gene of the common carp (Cyprinus carpio or ‘carp’), an ubiquitous invasive fish, was developed and used to measure eDNA in Lake Staring (MN, USA), in which both the density of carp and their distribution have been closely monitored for several years. Surface water, sub-surface water, and sediment were sampled from 22 locations in the lake, including areas frequently used by carp. In water, areas of high carp use had a higher rate of detection and concentration of eDNA, but there was no effect of fish use on sediment eDNA. The detection rate and concentration of eDNA in surface and sub-surface water were not significantly different (p≥0.5), indicating that eDNA did not accumulate in surface water. The detection rate followed the trend: high-use water > low-use water > sediment. The concentration of eDNA in sediment samples that were above the limit of detection were several orders of magnitude greater than water on a per mass basis, but a poor limit of detection led to low detection rates. The patchy distribution of eDNA in the water of our study lake suggests that the mechanisms that remove eDNA from the water column, such as decay and sedimentation, are rapid. Taken together, these results indicate that effective eDNA sampling methods should be informed by fish distribution, as eDNA concentration was shown to vary dramatically between samples taken less than 100 m apart. PMID:25383965

The relationship between the distribution of common carp and their environmental DNA in a small lake.

PubMed

Eichmiller, Jessica J; Bajer, Przemyslaw G; Sorensen, Peter W

2014-01-01

Although environmental DNA (eDNA) has been used to infer the presence of rare aquatic species, many facets of this technique remain unresolved. In particular, the relationship between eDNA and fish distribution is not known. We examined the relationship between the distribution of fish and their eDNA (detection rate and concentration) in a lake. A quantitative PCR (qPCR) assay for a region within the cytochrome b gene of the common carp (Cyprinus carpio or 'carp'), an ubiquitous invasive fish, was developed and used to measure eDNA in Lake Staring (MN, USA), in which both the density of carp and their distribution have been closely monitored for several years. Surface water, sub-surface water, and sediment were sampled from 22 locations in the lake, including areas frequently used by carp. In water, areas of high carp use had a higher rate of detection and concentration of eDNA, but there was no effect of fish use on sediment eDNA. The detection rate and concentration of eDNA in surface and sub-surface water were not significantly different (p≥0.5), indicating that eDNA did not accumulate in surface water. The detection rate followed the trend: high-use water > low-use water > sediment. The concentration of eDNA in sediment samples that were above the limit of detection were several orders of magnitude greater than water on a per mass basis, but a poor limit of detection led to low detection rates. The patchy distribution of eDNA in the water of our study lake suggests that the mechanisms that remove eDNA from the water column, such as decay and sedimentation, are rapid. Taken together, these results indicate that effective eDNA sampling methods should be informed by fish distribution, as eDNA concentration was shown to vary dramatically between samples taken less than 100 m apart.

Complex carbonate and clastic stratigraphy of the inner shelf off west-central Florida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Locker, S.D.; Doyle, L.J.; Hine, A.C.

1990-05-01

The near surface stratigraphy (< 30 m) of the inner shelf off the west coast of Florida was investigated using high-resolution seismic, side-scan sonar, and continuous underwater video camera coverage. The simultaneous operation of all three systems provided a unique opportunity to calibrate acoustic data with actual video images of the sea floor in a geologically complex area characterized by limestone dissolution structures, hard-bottom exposures, and overlain by a limited supply of terrigenous clastics. Three principle bottom types, grass, sand, and hard-bottom mapped using video and side-scan sonographs, show a correlation with two subsurface stratigraphic zones. The nearshore subsurface zonemore » extending to 6-7 m water depth is characterized by flat or rolling strata and sinkholes that increase in size (200-1,200 m in diameter) and become more numerous further offshore. This zone is truncated by a major erosional unconformity overlain by a thin (<3 m) sequence of Holocene sediment, which together form a terrace upon which the Anclote Key barrier island formed. The offshore subsurface zone (7-11 m water depth) exhibits irregular and discontinuous high-amplitude flat or inclined reflections and few sinkholes. Offshore, extensive hard-bottom exposures are common with discontinuous sediment that occur as lenses or sand waves. The complex stratigraphy of the west Florida shelf includes outcropping Neogene limestones that have undergone dissolution during sea level lowstands. Carbonates and clastics dispersed during multiple sea level changes overlie the Neogene limestones. Dissolution styles and erosional unconformities produced bedrock topography and now control modern geological and biological processes.« less

Heterotrophic potential of Atribacteria from deep marine Antarctic sediment

NASA Astrophysics Data System (ADS)

Carr, S. A.; Orcutt, B.; Mandernack, K. W.; Spear, J. R.

2015-12-01

Bacteria belonging to the newly classified candidate phylum "Atribacteria" (formerly referred to as "OP9" and "JS1") are common in anoxic methane-rich sediments. However, the metabolic functions and biogeochemical role of these microorganisms in the subsurface remains unrealized due to the lack of pure culture representatives. This study observed a steady increase of Atribacteria-related sequences with increasing sediment depth throughout the methane-rich zone of the Adélie Basin, Antarctica (according to a 16S rRNA gene survey). To explore the functional potential of Atribacteria in this basin, samples from various depths (14, 25 and 97 meters below seafloor), were subjected to metagenomic sequencing. Additionally, individual cells were separated from frozen, unpreserved sediment for whole genome amplification. The successful isolation and sequencing of a single-amplified Atribacteria genome from these unpreserved sediments demonstrates a future use of single cell techniques with previously collected and frozen sediments. Our resulting single-cell amplified genome, combined with metagenomic interpretations, provides our first insights to the functional potential of Atribacteria in deep subsurface settings. As observed for non-marine Atribacteria, genomic analyses suggest a heterotrophic metabolism, with Atribacteria potentially producing fermentation products such as acetate, ethanol and CO2. These products may in turn support methanogens within the sediment microbial community and explain the frequent occurrence of Atribacteria in anoxic methane-rich sediments.

Electromagnetic exploration in high-salinity groundwater zones: case studies from volcanic and soft sedimentary sites in coastal Japan

NASA Astrophysics Data System (ADS)

Suzuki, Koichi; Kusano, Yukiko; Ochi, Ryota; Nishiyama, Nariaki; Tokunaga, Tomochika; Tanaka, Kazuhiro

2017-01-01

Estimating the spatial distribution of groundwater salinity in coastal plain regions is becoming increasingly important for site characterisation and the prediction of hydrogeological environmental conditions resulting from radioactive waste disposal and underground CO2 storage. In previous studies of the freshwater-saltwater interface, electromagnetic methods were used for sites characterised by unconsolidated deposits or Neocene soft sedimentary rocks. However, investigating the freshwater-saltwater interface in hard rock sites (e.g. igneous areas) is more complex, with the permeability of the rocks greatly influenced by fractures. In this study, we investigated the distribution of high-salinity groundwater at two volcanic rock sites and one sedimentary rock site, each characterised by different hydrogeological features. Our investigations included (1) applying the controlled source audio-frequency magnetotelluric (CSAMT) method and (2) conducting laboratory tests to measure the electrical properties of rock core samples. We interpreted the 2D resistivity sections by referring to previous data on geology and geochemistry of groundwater. At the Tokusa site, an area of inland volcanic rocks, low resistivity zones were detected along a fault running through volcanic rocks and shallow sediments. The results suggest that fluids rise through the Tokusa-Jifuku Fault to penetrate shallow sediments in a direction parallel to the river, and some fluids are diluted by rainwater. At the Oki site, a volcanic island on a continental shelf, four resistivity zones (in upward succession: low, high, low and high) were detected. The results suggest that these four zones were formed during a transgression-regression cycle caused by the last glacial period. At the Saijo site, located on a coastal plain composed of thick sediments, we observed a deep low resistivity zone, indicative of fossil seawater remnant from a transgression after the last glacial period. The current coastal plain formed in historical times, following which fresh water penetrated the upper parts of the fossil seawater zone to form a freshwater aquifer ~200 m in thickness.

Multi-heme cytochromes provide a pathway for survival in energy-limited environments

PubMed Central

Deng, Xiao; Dohmae, Naoshi; Nealson, Kenneth H.; Hashimoto, Kazuhito; Okamoto, Akihiro

2018-01-01

Bacterial reduction of oxidized sulfur species (OSS) is critical for energy production in anaerobic marine subsurfaces. In organic-poor sediments, H2 has been considered as a major energy source for bacterial respiration. We identified outer-membrane cytochromes (OMCs) that are broadly conserved in sediment OSS-respiring bacteria and enable cells to directly use electrons from insoluble minerals via extracellular electron transport. Biochemical, transcriptomic, and microscopic analyses revealed that the identified OMCs were highly expressed on the surface of cells and nanofilaments in response to electron donor limitation. This electron uptake mechanism provides sufficient but minimum energy to drive the reduction of sulfate and other OSS. These results suggest a widespread mechanism for survival of OSS-respiring bacteria via electron uptake from solid minerals in energy-poor marine sediments. PMID:29464208

Episodic Salinization of Urban Rivers: Potential Impacts on Carbon, Cation, and Nutrient Fluxes

NASA Astrophysics Data System (ADS)

Haq, S.; Kaushal, S.

2017-12-01

Human dominated watersheds are subjected to an array of salt inputs (e.g. road salts), and in urban areas, infrastructure and impervious surfaces quickly drain applied road salts into the river channel. As a result, many streams experience episodic salinization over the course of hours to days following a snow event (e.g. road salt pulse), and long-term salinization over the course of seasons to decades. Salinization of streams can release contaminants (e.g. heavy metals), reduce biodiversity, and degrade drinking water quality. We investigated the water quality effects of episodic salinization in urban streams. Sediment and streamwater were incubated from twelve sites in the Baltimore-Washington Metropolitan Area under a range of sodium chloride treatments in a lab environment to mimic a vertical stream column with a sediment-water interface undergoing episodic salinization, and to characterize relationships between experimental salinization and nutrient/cation fluxes. Eight sites (Baltimore) exhibit a land use gradient and are routinely monitored within the Baltimore Ecosystem Study LTER project, and four sites (Washington DC) are suburban and offer a contrasting lithology and physiographic province. Our research suggests that salinization can mobilize total dissolved nitrogen, soluble reactive phosphorous, and base cations; potentially due to coupled biotic-abiotic processes, such as ion exchange, rapid nitrification, pH changes, and chloride-organic matter dispersal. The impact of salinization on dissolved inorganic and organic carbon varied between sites, potentially due to sediment composition, organic matter content, and ambient water quality. We contrasted the experimental results with measurements of salinization (specific conductance) and nutrients (nitrate) from real-time sensors operated by the US Geological Survey that encompass the same watersheds as our experimental sites. Sensor data was analyzed to provide insight on the timescales of salinity-nutrient interactions, and on underlying mechanisms and controls. The magnitude/frequency of salt pulses may increase in the future due to the interactive effect of climate change and urbanization. An improved understanding of the salinization-nutrients interactions is necessary to better manage aquatic resources.

Diffusivity of Carbon Dioxide in Aqueous Solutions under Geologic Carbon Sequestration Conditions.

PubMed

Perera, Pradeep N; Deng, Hang; Schuck, P James; Gilbert, Benjamin

2018-04-26

Accurate assessment of the long-term security of geologic carbon sequestration requires knowledge of the mobility of carbon dioxide in brines under pressure and temperature conditions that prevail in subsurface aquifers. Here, we report Raman spectroscopic measurements of the rate of CO 2 diffusion in water and brines as a function of pressure, salinity, and concentration of CO 2 . In pure water at 50 ± 2 °C and 90 ± 2 bar, we find the diffusion coefficient, D, to be (3.08 ± 0.03) × 10 -9 m 2 /s, a value that is consistent with a recent microfluidic study but lower than earlier PVT measurements. Under reservoir conditions, salinity affects the mobility of CO 2 significantly and D decreased by 45% for a 4 M solution of NaCl. We find significant differences of diffusivity of CO 2 in brines (0-4 M NaCl), in both the absolute values and the trend compared to the Stokes-Einstein prediction under our experimental conditions. We observe that D decreases significantly at the high CO 2 concentrations expected in subsurface aquifers (∼15% reduction at 0.55 mol/kg of CO 2 ) and provides an empirical correction to the commonly reported D values that assume a tracer concentration dependence on diffusivity.

Water Chemistry of Ephemeral Streams

Treesearch

J.L. Michael; W.P. Fowler; H.L. Gibbs; J.B. Fischer

1994-01-01

Four individual, but related, studies are currently being conducted to determine the effects of clearcut and seed tree reproduction cutting methods on stream chemistry, sedimentation, and bedload movement by monitoring herbicide and nutrient movement in stemflow, overland flow, streamflow, and zonal subsurface flow. Sediment movement is being quantified for...

Hyporheic zone as a bioreactor: sediment heterogeneity influencing biogeochemical processes

NASA Astrophysics Data System (ADS)

Perujo, Nuria; Romani, Anna M.; Sanchez-Vila, Xavier

2017-04-01

Mediterranean fluvial systems are characterized by frequent periods of low flow or even drought. During low flow periods, water from wastewater treatment plants (WWTPs) is proportionally large in fluvial systems. River water might be vertically transported through the hyporheic zone, and then porous medium acts as a complementary treatment system since, as water infiltrates, a suite of biogeochemical processes occurs. Subsurface sediment heterogeneity plays an important role since it influences the interstitial fluxes of the medium and drives biomass growing, determining biogeochemical reactions. In this study, WWTP water was continuously infiltrated for 3 months through two porous medium tanks: one consisting of 40 cm of fine sediment (homogeneous); and another comprised of two layers of different grain size sediments (heterogeneous), 20 cm of coarse sediment in the upper part and 20 cm of fine one in the bottom. Several hydrological, physicochemical and biological parameters were measured periodically (weekly at the start of the experiment and biweekly at the end). Analysed parameters include dissolved nitrogen, phosphorus, organic carbon, and oxygen all measured at the surface, and at 5, 20 and 40 cm depth. Variations in hydraulic conductivity with time were evaluated. Sediment samples were also analysed at three depths (surface, 20 and 40 cm) to determine bacterial density, chlorophyll content, extracellular polymeric substances, and biofilm function (extracellular enzyme activities and carbon substrate utilization profiles). Preliminary results suggest hydraulic conductivity to be the main driver of the differences in the biogeochemical processes occurring in the subsurface. At the heterogeneous tank, a low nutrient reduction throughout the whole medium is measured. In this medium, high hydraulic conductivity allows for a large amount of infiltrating water, but with a small residence time. Since some biological processes are largely time-dependent, small water residence time results in low nutrient reduction. Moreover, high nitrification and low ammonium concentration in the interface of the two grain-size layers are measured, probably related to high dissolved oxygen concentration at the coarse-fine sediment interface, further promoting accumulation of bacteria and algae. In contrast, the homogeneous tank shows low dissolved oxygen values and high denitrification in depth which could be related to lower overall hydraulic conductivity, as compared to the heterogeneous tank. The preliminary analysis of our results indicates a key role of hydraulic conductivity on biogeochemical processes in the porous medium but, at the same time that it is strongly interacting with sediment grain-size distribution and the development of biofilm. The final scope of this study is to know the interactions between physicochemical and biological components in sediments in order to understand in detail the biogeochemical processes occurring.

The occurrence and behavior of radium in saline formation water of the U.S. Gulf Coast region.

USGS Publications Warehouse

Kraemer, T.F.; Reid, D.F.

1984-01-01

Ra was measured in deep saline formation waters produced from a variety of US Gulf Coast subsurface environments, including oil and gas reservoirs, and water-producing geopressured aquifers. A strong positive correlation was found between formation-water salinity and Ra activity, resulting from the interaction of formation water with aquifer matrix. Ra isotopes enter the fluid phase after being produced by the decay of parent elements U and Th on and within the solid matrix. The processes believed to be primarily responsible for transfering Ra from matrix to formation water are chemical leaching and alpha -particle recoil. Factors controlling the observed salinity-Ra relationship may be one or a combination of the following: 1) ion exchange; 2) increased solubility of matrix silica surrounding Ra atoms, coupled with a salinity-controlled rate of re-equilibration of silica between solution and quartz grains; and 3) the equilibration of Ra in solution with detrital baryte within the aquifer. No difference was found in the brine-Ra relation in water produced from oil or gas wells and water produced from wells penetrating only water-bearing aquifers, although the relation was more highly correlated for water-bearing aquifers than hydrocarbon-containing reservoirs.-P.Br.

The occurrence and behavior of radium in saline formation water of the U.S. Gulf Coast region

USGS Publications Warehouse

Kraemer, T.F.; Reid, D.F.

1984-01-01

Radium has been measured in deep saline formation waters produced from a variety of U.S. Gulf Coast subsurface environments, including oil reservoirs, gas reservoirs and water-producing geopressured aquifers. A strong positive correlation has been found between formation-water salinity and Ra activity, resulting from the interaction of formation water with aquifer matrix. Ra isotopes enter the fluid phase after being produced by the decay of parent elements U and Th, which are located at sites on and within the solid matrix. Processes that are belived to be primarily responsible for transferring Ra from matrix to formation water are chemical leaching and alpha-particle recoil. Factors controlling the observed salinity-Ra relationship may be one or a combination of the following factors: (a) ion exchange; (b) increased solubility of matrix silica surrounding Ra atoms, coupled with a salinity-controlled rate of reequilibration of silica between solution and quartz grains; and (c) the equilibration of Ra in solution with detrial barite within the aquifer. No difference was found in the brine-Ra relation in water produced from oil or gas wells and water produced from wells penetrating only water-bearing aquifers, although the relation was more highly correlated for water-bearing aquifers than hydrocarbon-containing reservoirs. ?? 1984.

Relationship of subseafloor microbial diversity to sediment age and organic carbon content

NASA Astrophysics Data System (ADS)

Walsh, E. A.; Kirkpatrick, J. B.; Sogin, M. L.; D'Hondt, S. L.

2013-12-01

Our tag pyrosequencing investigation of four globally distant sites reveals sediment age and total organic carbon content to be significant components in understanding subseafloor diversity. Our sampling locations include two sites from high-productivity regions (Indian Ocean and Bering Sea) and two from moderate-productivity (eastern and central equatorial Pacific Ocean). Sediment from the high-productivity sites has much higher TOC than sediment from the moderate-productivity equatorial sites. We applied a high-resolution 16S V4-V6 tag pyrosequencing approach to 24 bacterial and 17 archaeal samples, totaling 602,502 reads. We identified1,291 archaeal and 15,910 bacterial OTUs (97%) from these reads. We analyzed bacterial samples from all four sites in addition to archaeal samples from our high productivity sites. These high productivity, high TOC sites have a pronounced methane-rich sulfate-free zone at depth from which archaea have been previously considered to dominate (Biddle et al., 2006). At all four locations, microbial diversity is highest near the seafloor and drops rapidly to low but stable values with increasing sediment depth. The depth at which diversity stabilizes varies greatly from site to site, but the age at which it stabilizes is relatively constant. At all four sites, diversity reaches low stable values a few hundred thousand years after sediment deposition. The sites with high total organic carbon (high productivity sites) generally exhibit higher diversity at each sediment age than the sites with lower total organic carbon (moderate-productivity sites). Archaeal diversity is lower than bacterial diversity at every sampled depth. Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sørensen, K.B., Anderson, R. et al. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. PNAS 103: 3846-3851.

Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline–Alkaline Soils

PubMed Central

Liu, Kaihui; Ding, Xiaowei; Tang, Xiaofei; Wang, Jianjun; Li, Wenjun; Yan, Qingyun; Liu, Zhenghua

2018-01-01

Understanding the effects of environmental factors on microbial communities is critical for microbial ecology, but it remains challenging. In this study, we examined the diversity (alpha diversity) and community compositions (beta diversity) of prokaryotes and fungi in hypersaline sediments and salinized soils from northern China. Environmental variables were highly correlated, but they differed significantly between the sediments and saline soils. The compositions of prokaryotic and fungal communities in the hypersaline sediments were different from those in adjacent saline–alkaline soils, indicating a habitat-specific microbial distribution pattern. The macroelements (S, P, K, Mg, and Fe) and Ca were, respectively, correlated closely with the alpha diversity of prokaryotes and fungi, while the macronutrients (e.g., Na, S, P, and Ca) were correlated with the prokaryotic and fungal beta-diversity (P ≤ 0.05). And, the nine microelements (e.g., Al, Ba, Co, Hg, and Mn) and micronutrients (Ba, Cd, and Sr) individually shaped the alpha diversity of prokaryotes and fungi, while the six microelements (e.g., As, Ba, Cr, and Ge) and only the trace elements (Cr and Cu), respectively, influenced the beta diversity of prokaryotes and fungi (P < 0.05). Variation-partitioning analysis (VPA) showed that environmental variables jointly explained 55.49% and 32.27% of the total variation for the prokaryotic and fungal communities, respectively. Together, our findings demonstrate that the diversity and community composition of the prokaryotes and fungi were driven by different macro and microelements in saline habitats, and that geochemical elements could more widely regulate the diversity and community composition of prokaryotes than these of fungi. PMID:29535703

Impact of CO 2 on the Evolution of Microbial Communities Exposed to Carbon Storage Conditions, Enhanced Oil Recovery, and CO 2 Leakage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna; Gregory, Kelvin B.; Lowry, Gregorgy V.

Geologic carbon storage (GCS) is a crucial part of a proposed mitigation strategy to reduce the anthropogenic carbon dioxide (CO 2) emissions to the atmosphere. During this process, CO 2 is injected as super critical carbon dioxide (SC-CO 2) in confined deep subsurface storage units, such as saline aquifers and depleted oil reservoirs. The deposition of vast amounts of CO 2 in subsurface geologic formations could unintentionally lead to CO 2 leakage into overlying freshwater aquifers. Introduction of CO 2 into these subsurface environments will greatly increase the CO 22 concentration and will create CO 2 concentration gradients that drivemore » changes in the microbial communities present. While it is expected that altered microbial communities will impact the biogeochemistry of the subsurface, there is no information available on how CO 2 gradients will impact these communities. The overarching goal of this project is to understand how CO 2 exposure will impact subsurface microbial communities at temperatures and pressures that are relevant to GCS and CO 2 leakage scenarios. To meet this goal, unfiltered, aqueous samples from a deep saline aquifer, a depleted oil reservoir, and a fresh water aquifer were exposed to varied concentrations of CO 2 at reservoir pressure and temperature. The microbial ecology of the samples was examined using molecular, DNA-based techniques. The results from these studies were also compared across the sites to determine any existing trends. Results reveal that increasing CO 2 leads to decreased DNA concentrations regardless of the site, suggesting that microbial processes will be significantly hindered or absent nearest the CO 2 injection/leakage plume where CO 2 concentrations are highest. At CO 2 exposures expected downgradient from the CO 2 plume, selected microorganisms emerged as dominant in the CO 2 exposed conditions. Results suggest that the altered microbial community was site specific and highly dependent on pH. The site-dependent results suggest a limited ability to predict the emerging dominant species for other CO 2 exposed environments. This study improves the understanding of how a subsurface microbial community may respond to conditions expected from GCS and CO 2 leakage. This is the first step for understanding how a CO 2-altered microbial community may impact injectivity, permanence of stored CO 2, and subsurface water quality. Future work with microbial communities from new subsurface sites would increase the current understanding of this project. Additionally, incorporation of metagenomic methods would increase understanding of potential microbial processes that may be prevalent in CO 2 exposed environments.« less

Impact of CO 2 on the Evolution of Microbial Communities Exposed to Carbon Storage Conditions, Enhanced Oil Recovery, and CO 2 Leakage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna M.; Gregory, Kelvin B.; Lowry, Gregory V.

Geologic carbon storage (GCS) is a crucial part of a proposed mitigation strategy to reduce the anthropogenic carbon dioxide (CO 2) emissions to the atmosphere. During this process, CO 2 is injected as super critical carbon dioxide (SC-CO 2) in confined deep subsurface storage units, such as saline aquifers and depleted oil reservoirs. The deposition of vast amounts of CO 2 in subsurface geologic formations could unintentionally lead to CO 2 leakage into overlying freshwater aquifers. Introduction of CO 2 into these subsurface environments will greatly increase the CO 2 concentration and will create CO 2 concentration gradients that drivemore » changes in the microbial communities present. While it is expected that altered microbial communities will impact the biogeochemistry of the subsurface, there is no information available on how CO 2 gradients will impact these communities. The overarching goal of this project is to understand how CO 2 exposure will impact subsurface microbial communities at temperatures and pressures that are relevant to GCS and CO 2 leakage scenarios. To meet this goal, unfiltered, aqueous samples from a deep saline aquifer, a depleted oil reservoir, and a fresh water aquifer were exposed to varied concentrations of CO 2 at reservoir pressure and temperature. The microbial ecology of the samples was examined using molecular, DNA-based techniques. The results from these studies were also compared across the sites to determine any existing trends. Results reveal that increasing CO 2 leads to decreased DNA concentrations regardless of the site, suggesting that microbial processes will be significantly hindered or absent nearest the CO 2 injection/leakage plume where CO 2 concentrations are highest. At CO 2 exposures expected downgradient from the CO 2 plume, selected microorganisms emerged as dominant in the CO 2 exposed conditions. Results suggest that the altered microbial community was site specific and highly dependent on pH. The site-dependent results suggest a limited ability to predict the emerging dominant species for other CO 2-exposed environments. This study improves the understanding of how a subsurface microbial community may respond to conditions expected from GCS and CO 2 leakage. This is the first step for understanding how a CO 2-altered microbial community may impact injectivity, permanence of stored CO 2, and subsurface water quality. Future work with microbial communities from new subsurface sites would increase the current understanding of this project. Additionally, incorporation of metagenomic methods would increase understanding of potential microbial processes that may be prevalent in CO 2 exposed environments.« less

Biogeochemistry of silica in Devils Lake: Implications for diatom preservation

USGS Publications Warehouse

Lent, R.M.; Lyons, B.

2001-01-01

Diatom-salinity records from sediment cores have been used to construct climate records of saline-lake basins. In many cases, this has been done without thorough understanding of the preservation potential of the diatoms in the sediments through time. The purpose of this study was to determine the biogeochemistry of silica in Devils Lake and evaluate the potential effects of silica cycling on diatom preservation. During the period of record, 1867-1999, lake levels have fluctuated from 427 m above sea level in 1940 to 441.1 m above sea level in 1999. The biogeochemistry of silica in Devils Lake is dominated by internal cycling. During the early 1990s when lake levels were relatively high, about 94% of the biogenic silica (BSi) produced in Devils Lake was recycled in the water column before burial. About 42% of the BSi that was incorporated in bottom sediments was dissolved and diffused back into the lake, and the remaining 58% was buried. Therefore, the BSi accumulation rate was about 3% of the BSi assimilation rate. Generally, the results obtained from this study are similar to those obtained from studies of the biogeochemistry of silica in large oligotrophic lakes and the open ocean where most of the BSi produced is recycled in surface water. During the mid 1960s when lake levels were relatively low, BSi assimilation and water-column dissolution rates were much higher than when lake levels were high. The BSi assimilation rate was as much as three times higher during low lake levels. Even with the much higher BSi assimilation rate, the BSi accumulation rate was about three times lower because the BSi water-column dissolution rate was more than 99% of the BSi assimilation rate compared to 94% during high lake levels. Variations in the biogeochemistry of silica with lake level have important implications for paleolimnologic studies. Increased BSi water-column dissolution during decreasing lake levels may alter the diatom-salinity record by selectively removing the less resistant diatoms. Also, BSi accumulation may be proportional to the amount of silica input from tributary sources. Therefore, BSi accumulation chronologies from sediment cores may be effective records of tributary inflow.

Hydrologic exchanges and baldcypress water use on deltaic hummocks, Louisiana, USA

USGS Publications Warehouse

Hsueh, Yu-Hsin; Chambers, Jim L.; Krauss, Ken W.; Allen, Scott T.; Keim, Richard F.

2016-01-01

Coastal forested hummocks support clusters of trees in the saltwater–freshwater transition zone. To examine how hummocks support trees in mesohaline sites that are beyond physiological limits of the trees, we used salinity and stable isotopes (2H and 18O) of water as tracers to understand water fluxes in hummocks and uptake by baldcypress (Taxodium distichum (L.) Rich.), which is the most abundant tree species in coastal freshwater forests of the southeastern U.S. Hummocks were always partially submerged and were completely submerged 1 to 8% of the time during the two studied growing seasons, in association with high water in the estuary. Salinity, δ18O, and δ2H varied more in the shallow open water than in groundwater. Surface water and shallow groundwater were similar to throughfall in isotopic composition, which suggested dominance by rainfall. Salinity of groundwater in hummocks increased with depth, was higher than in swales, and fluctuated little over time. Isotopic composition of xylem water in baldcypress was similar to the vadose zone and unlike other measured sources, indicating that trees preferentially use unsaturated hummock tops as refugia from higher salinity and saturated soil in swales and the lower portions of hummocks. Sustained upward gradients of salinity from groundwater to surface water and vadose water, and low variation in groundwater salinity and isotopic composition, suggested long residence time, limited exchange with surface water, and that the shallow subsurface of hummocks is characterized by episodic salinization and slow dilution.

Influence of Wetland and Channel Sediments on Strontium-90 Transport in the Borschi Stream, near Chernobyl

NASA Astrophysics Data System (ADS)

Freed, R.; Smith, L.; Bugai, D.

2001-12-01

In the Borschi watershed, 3 km south of the Chernobyl nuclear power plant, we have found the transfer of 90Sr in wetlands pore waters to surface waters and the subsequent flow of wetland surface waters to the stream, largely effect the concentration of 90Sr in the Borschi channel. In Borschi, we have observed that during most of the year, wetlands are the main source of 90Sr contributing to the Borschi stream and channel bottom sediments are a secondary source. Wetland pore waters have at least an order of magnitude higher concentration of 90Sr than all other surface and subsurface waters. Pore water data obtained using peepers shows the 90Sr diffusion gradient is high in near-surface wetland sediments while the 90Sr diffusion gradient is moderate to insignificant in near-surface channel sediments. Channel and wetland sediments are highly depleted in 90Sr compared with immobile nuclear fission products such as europium-154 and can account for all of the 90Sr removed by the stream since the accident. While channel sediments are largely depleted in exchangeable 90Sr, wetland sediments represent a large source of exchangeable 90Sr. Removal of 90Sr by the stream from the wetland and channel sediments is on the same order as mass loss by decay.

MORPHOLOGICAL AND CULTURAL COMPARISON OF MICROORGANISMS IN SURFACE SOIL AND SUBSURFACE SEDIMENTS AT A PRISTINE STUDY SITE IN OKLAHOMA (JOURNAL VERSION)

EPA Science Inventory

Surface-soil and subsurface microfloras at the site of a shallow aquifer in Oklahoma were examined and compared with respect to (1) total and viable cell numbers, (2) colony and cell types that grew on various plating media, (3) cell morphologies seen in flotation films stripped ...

Is Mars a habitable environment for extremophilic microorganisms from Earth?

NASA Astrophysics Data System (ADS)

Rettberg, Petra; Reitz, Guenther; Flemming, Hans-Curt; Bauermeister, Anja

In the last decades several sucessful space missions to our neighboring planet Mars have deepened our knowledge about its environmental conditions substantially. Orbiters with intruments for remote sensing and landers with sophisticated intruments for in situ investigations resulted in a better understanding of Mars’ radiation climate, atmospheric composition, geology, and mineralogy. Extensive regions of the surface of Mars are covered with sulfate- and ferric oxide-rich layered deposits. These sediments indicate the possible existence of aqueous, acidic environments on early Mars. Similar environments on Earth harbour a specialised community of microorganisms which are adapted to the local stress factors, e.g. low pH, high concentrations of heavy metal ions, oligotrophic conditions. Acidophilic iron-sulfur bacteria isolated from such habitats on Earth could be considered as model organisms for an important part of a potential extinct Martian ecosystem or an ecosystem which might even exist today in protected subsurface niches. Acidithiobacillus ferrooxidans was chosen as a model organism to study the ability of these bacteria to survive or grow under conditions resembling those on Mars. Stress conditions tested included desiccation, radiation, low temperatures, and high salinity. It was found that resistance to desiccation strongly depends on the mode of drying. Biofilms grown on membrane filters can tolerate longer periods of desiccation than planktonic cells dried without any added protectants, and drying under anaerobic conditions is more favourable to survival than drying in the presence of oxygen. Organic compounds such as trehalose and glycine betaine had a positive influence on survival after drying and freezing. A. ferrooxidans was shown to be sensitive to high salt concentrations, ionizing radiation, and UV radiation. However, the bacteria were able to utilize the iron minerals in Mars regolith mixtures as sole energy source. The survival and growth of A. ferrooxidans in a Mars subsurface simulation experiment could be demonstrated. Thus, from a geochemical perspective, these chemolithoautotrophic bacteria are relevant candidates for a hypothetical underground Martian food chain, despite their limited ability to tolerate the harsh physical conditions of the surface of Mars today.

Effects of substrate salinity on early seedling survival and growth of Scirpus robustus Pursh and Spartina alterniflora Loisel.

PubMed

Lewis, Michael A; Weber, David E

2002-02-01

Rooted aquatic plants are being used increasingly to test the toxicity of sediments. However, effects of naturally occurring substrate constituents on most potential test species are not well understood even though their effects could affect the test results. The objective of this study was to determine the effect of substrate salinity (NaCl) on early seedling survival and growth of the emergent macrophytes, Scirpus robustus Pursh and Spartina alterniflora Loisel. Results of four 21- and 28-day toxicity tests, conducted in an artificial sediment, indicated interspecific differences in NaCl sensitivity when based on changes in shoot, root and whole plant dry-weight biomass. Concentrations of 7.8 g NaCl/l and 19.2 g NaCl/l first reduced early seedling biomass of S. robustus and S. alterniflora (P<0.05), respectively, when compared to plants grown in sediment containing no measurable salinity. Seedling survival was not affected at average concentrations of 17.5 g NaCl/l or less for S. robustus and 22.3 g NaCl/l or less for S. alterniflora. The results indicate that substrate salinity is an important consideration in the selection of test species for laboratory phytotoxicity tests conducted with estuarine sediments, particularly if determination of chronic toxicity attributable to anthropogenic contamination is the primary objective.

Continuous resistivity profiling data from the Corsica River Estuary, Maryland

USGS Publications Warehouse

Cross, V.A.; Bratton, J.F.; Worley, C.R.; Crusius, John; Kroeger, K.D.

2011-01-01

Submarine groundwater discharge (SGD) into Maryland's Corsica River Estuary was investigated as part of a larger study to determine its importance in nutrient delivery to the Chesapeake Bay. The Corsica River Estuary represents a coastal lowland setting typical of much of the eastern bay. An interdisciplinary U.S. Geological Survey (USGS) science team conducted field operations in the lower estuary in April and May 2007. Resource managers are concerned about nutrients that are entering the estuary via SGD that may be contributing to eutrophication, harmful algal blooms, and fish kills. Techniques employed in the study included continuous resistivity profiling (CRP), piezometer sampling of submarine groundwater, and collection of a time series of radon tracer activity in surface water. A CRP system measures electrical resistivity of saturated subestuarine sediments to distinguish those bearing fresh water (high resistivity) from those with saline or brackish pore water (low resistivity). This report describes the collection and processing of CRP data and summarizes the results. Based on a grid of 67.6 kilometers of CRP data, low-salinity (high-resistivity) groundwater extended approximately 50-400 meters offshore from estuary shorelines at depths of 5 to >12 meters below the sediment surface, likely beneath a confining unit. A band of low-resistivity sediment detected along the axis of the estuary indicated the presence of a filled paleochannel containing brackish groundwater. The meandering paleochannel likely incised through the confining unit during periods of lower sea level, allowing the low-salinity groundwater plumes originating from land to mix with brackish subestuarine groundwater along the channel margins and to discharge. A better understanding of the spatial variability and geological controls of submarine groundwater flow beneath the Corsica River Estuary could lead to improved models and mitigation strategies for nutrient over-enrichment in the estuary and in other similar settings.

Comparison of CO2 trapping in highly heterogeneous reservoirs with Brooks-Corey and van Genuchten capillary pressure curves

NASA Astrophysics Data System (ADS)

Gershenzon, Naum; Soltanian, Mohamadreza; Ritzi, Robert, Jr.; Dominic, David

2015-04-01

Geological heterogeneities essentially affect the dynamics of a CO2 plume in subsurface environments. Recent studies have led to new conceptual and quantitative models for sedimentary architecture in fluvial deposits over a range of scales that are relevant to the performance of some deep saline reservoirs [1, 2]. Previously we showed how the dynamics of a CO2 plume, during and after injection, is influenced by the hierarchical and multi-scale stratal architecture in such reservoirs [3]. The results strongly suggest that representing these small scales (few cm in vertical direction and few meters in horizontal direction) features and representing how they are organized within a hierarchy of larger-scale features, is critical to understanding capillary trapping processes. The results also demonstrated the importance of using separate capillary pressure and relative permeability relationships for different textural facies types. Here we present the result of simulation of CO2 trapping in deep saline aquifers using two different conventional approaches, i.e. Brooks-Corey and van Genuchten, to capillary pressure. We showed that capillary trapping as well as dissolution rates are very different for the Brooks-Corey and van Genuchten approaches if reservoir consists from various species with different capillary pressure and relative permeability curves. We also found a dramatic difference in simulation time; using the van Genuchten approach improves convergence and thus reduces calculation time by one-two orders of magnitude. [1] Bridge, J.S. (2006), Fluvial facies models: Recent developments, in Facies Models Revisited, SEPM Spec. Publ., 84, edited by H. W. Posamentier and R. G. Walker, pp. 85-170, Soc. for Sediment. Geol. (SEPM), Tulsa, Okla [2] Ramanathan, R., A. Guin, R.W. Ritzi, D.F. Dominic, V.L. Freedman, T.D. Scheibe, and I.A. Lunt (2010), Simulating the heterogeneity in channel belt deposits: Part 1. A geometric-based methodology and code, Water Resources Research, v. 46, W04515. [3] Gershenzon N.I., M. Soltanian, R.W. Ritzi Jr., and D.F. Dominic (2014) Influence of small scale heterogeneity on CO2 trapping processes in deep saline aquifers, Energy Procedia, 59, 166 - 173.

Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N2

NASA Astrophysics Data System (ADS)

Newcomer, Michelle E.; Hubbard, Susan S.; Fleckenstein, Jan H.; Maier, Ulrich; Schmidt, Christian; Thullner, Martin; Ulrich, Craig; Flipo, Nicolas; Rubin, Yoram

2018-03-01

Rivers in climatic zones characterized by dry and wet seasons often experience periodic transitions between losing and gaining conditions across the river-aquifer continuum. Infiltration shifts can stimulate hyporheic microbial biomass growth and cycling of riverine carbon and nitrogen leading to major exports of biogenic CO2 and N2 to rivers. In this study, we develop and test a numerical model that simulates biological-physical feedback in the hyporheic zone. We used the model to explore different initial conditions in terms of dissolved organic carbon availability, sediment characteristics, and stochastic variability in aerobic and anaerobic conditions from water table fluctuations. Our results show that while highly losing rivers have greater hyporheic CO2 and N2 production, gaining rivers allowed the greatest fraction of CO2 and N2 production to return to the river. Hyporheic aerobic respiration and denitrification contributed 0.1-2 g/m2/d of CO2 and 0.01-0.2 g/m2/d of N2; however, the suite of potential microbial behaviors varied greatly among sediment characteristics. We found that losing rivers that consistently lacked an exit pathway can store up to 100% of the entering C/N as subsurface biomass and dissolved gas. Our results demonstrate the importance of subsurface feedbacks whereby microbes and hydrology jointly control fate of C and N and are strongly linked to wet-season control of initial sediment conditions and hydrologic control of seepage direction. These results provide a new understanding of hydrobiological and sediment-based controls on hyporheic zone respiration, including a new explanation for the occurrence of anoxic microzones and large denitrification rates in gravelly riverbeds.

Stimulation of Microbially Mediated Arsenic Release in Bangladesh Aquifers by Young Carbon Indicated by Radiocarbon Analysis of Sedimentary Bacterial Lipids.

PubMed

Whaley-Martin, K J; Mailloux, B J; van Geen, A; Bostick, B C; Silvern, R F; Kim, C; Ahmed, K M; Choudhury, I; Slater, G F

2016-07-19

The sources of reduced carbon driving the microbially mediated release of arsenic to shallow groundwater in Bangladesh remain poorly understood. Using radiocarbon analysis of phospholipid fatty acids (PLFAs) and potential carbon pools, the abundance and carbon sources of the active, sediment-associated, in situ bacterial communities inhabiting shallow aquifers (<30 m) at two sites in Araihazar, Bangladesh, were investigated. At both sites, sedimentary organic carbon (SOC) Δ(14)C signatures of -631 ± 54‰ (n = 12) were significantly depleted relative to dissolved inorganic carbon (DIC) of +24 ± 30‰ and dissolved organic carbon (DOC) of -230 ± 100‰. Sediment-associated PLFA Δ(14)C signatures (n = 10) at Site F (-167‰ to +20‰) and Site B (-163‰ to +21‰) were highly consistent and indicated utilization of carbon sources younger than the SOC, likely from the DOC pool. Sediment-associated PLFA Δ(14)C signatures were consistent with previously determined Δ(14)C signatures of microbial DNA sampled from groundwater at Site F indicating that the carbon source for these two components of the subsurface microbial community is consistent and is temporally stable over the two years between studies. These results demonstrate that the utilization of relatively young carbon sources by the subsurface microbial community occurs at sites with varying hydrology. Further they indicate that these young carbon sources drive the metabolism of the more abundant sediment-associated microbial communities that are presumably more capable of Fe reduction and associated release of As. This implies that an introduction of younger carbon to as of yet unaffected sediments (such as those comprising the deeper Pleistocene aquifer) could stimulate microbial communities and result in arsenic release.

Effect of Submarine Groundwater Discharge on Relict Arctic Submarine Permafrost and Gas Hydrate

NASA Astrophysics Data System (ADS)

Frederick, J. M.; Buffett, B. A.

2014-12-01

Permafrost-associated gas hydrate deposits exist at shallow depths within the sediments of the circum-Arctic continental shelves. Degradation of this shallow water reservoir has the potential to release large quantities of methane gas directly to the atmosphere. Gas hydrate stability and the permeability of the shelf sediments to gas migration is closely linked with submarine permafrost. Submarine permafrost extent depends on several factors, such as the lithology, sea level variations, mean annual air temperature, ocean bottom water temperature, geothermal heat flux, and the salinity of the pore water. The salinity of the pore water is especially relevant because it partially controls the freezing point for both ice and gas hydrate. Measurements of deep pore water salinity are few and far between, but show that deep off-shore sediments are fresh. Deep freshening has been attributed to large-scale topographically-driven submarine groundwater discharge, which introduces fresh terrestrial groundwater into deep marine sediments. We investigate the role of submarine ground water discharge on the salinity field and its effects on the seaward extent of relict submarine permafrost and gas hydrate stability on the Arctic shelf with a 2D shelf-scale model based on the finite volume method. The model tracks the evolution of the temperature, salinity, and pressure fields given imposed boundary conditions, with latent heat of water ice and hydrate formation included. The permeability structure of the sediments is coupled to changes in permafrost. Results show that pore fluid is strongly influenced by the permeability variations imposed by the overlying permafrost layer. Groundwater discharge tends to travel horizontally off-shore beneath the permafrost layer and the freshwater-saltwater interface location displays long timescale transient behavior that is dependent on the groundwater discharge strength. The seaward permafrost extent is in turn strongly influenced by the salinity field and location of the freshwater-saltwater transition. Our results suggest that the role of salt transport and its effect on permafrost evolution can provide context for the interpretation of recent permafrost maps and methane observations in the Arctic.

Mapping Erosion and Salinity Risk Categories Using GIS and the Rangeland Hydrology Erosion Model

USDA-ARS?s Scientific Manuscript database

Up to fifteen percent of rangelands in the state of Utah in the United States are classified as being in severely eroding condition. Some of these degraded lands are located on saline, erodible soils of the Mancos Shale formation. This results in a disproportionate contribution of sediment, salinity...

MICROBIAL DIVERSITY IN SURFACE SEDIMENTS: A COMPARISON OF TWO ESTUARINE CONTINUUMS

EPA Science Inventory

The microbial diversity in estuarine sediments of the Altamaha and Savannah Rivers in Georgia were compared temporally and spatially using phospholipid fatty acid (PLFA) analysis. Surface sediment samples collected along a salinity gradient were also analyzed for ATP, TOC, and C ...

Flow convergence caused by a salinity minimum in a tidal channel

USGS Publications Warehouse

Warner, John C.; Schoellhamer, David H.; Burau, Jon R.; Schladow, S. Geoffrey

2006-01-01

Residence times of dissolved substances and sedimentation rates in tidal channels are affected by residual (tidally averaged) circulation patterns. One influence on these circulation patterns is the longitudinal density gradient. In most estuaries the longitudinal density gradient typically maintains a constant direction. However, a junction of tidal channels can create a local reversal (change in sign) of the density gradient. This can occur due to a difference in the phase of tidal currents in each channel. In San Francisco Bay, the phasing of the currents at the junction of Mare Island Strait and Carquinez Strait produces a local salinity minimum in Mare Island Strait. At the location of a local salinity minimum the longitudinal density gradient reverses direction. This paper presents four numerical models that were used to investigate the circulation caused by the salinity minimum: (1) A simple one-dimensional (1D) finite difference model demonstrates that a local salinity minimum is advected into Mare Island Strait from the junction with Carquinez Strait during flood tide. (2) A three-dimensional (3D) hydrodynamic finite element model is used to compute the tidally averaged circulation in a channel that contains a salinity minimum (a change in the sign of the longitudinal density gradient) and compares that to a channel that contains a longitudinal density gradient in a constant direction. The tidally averaged circulation produced by the salinity minimum is characterized by converging flow at the bed and diverging flow at the surface, whereas the circulation produced by the constant direction gradient is characterized by converging flow at the bed and downstream surface currents. These velocity fields are used to drive both a particle tracking and a sediment transport model. (3) A particle tracking model demonstrates a 30 percent increase in the residence time of neutrally buoyant particles transported through the salinity minimum, as compared to transport through a constant direction density gradient. (4) A sediment transport model demonstrates increased deposition at the near-bed null point of the salinity minimum, as compared to the constant direction gradient null point. These results are corroborated by historically noted large sedimentation rates and a local maximum of selenium accumulation in clams at the null point in Mare Island Strait.

Teaching of the subject "density difference caused by salinity", one of the reasons that plays role in the occurrence of currents in straits, seas and oceans by the use of a teaching material

NASA Astrophysics Data System (ADS)

Gumussoy, Verim

2015-04-01

Large masses of moving water in seas and oceans are called currents. Root causes of currents are steady winds that occur due to the global atmospheric system and the density differences caused by different heat and salinity levels of water masses. Different feeding and evaporation characteristics of seas and oceans result in salinity and density levels. As a result, subsurface currents occur in straits where seas with different salinity and density levels meet and in the nearby seas. The Bosporus in Istanbul where I live and the school I am working at is has these subsurface currents. In the Black Sea where the rivers the Danube, Dnieper, Don, Yesilirmak, Kizilirmak and Sakarya flow into and the evaporation level is less due to the latitude effect, salinity level is less compared to Marmara and Aegean Seas. As Marmara Sea has higher salt amount than Black Sea, there is a great density difference between these two seas. Marmara Sea has a higher concentration of salt and therefore a higher density than Black Sea. And this leads to occurrence of subsurface currents in the Bosporus. I get my students to carry out a small demonstration to help them understand the occurrence of ocean currents and currents in the seas and the Bosporus by the use of a material. We need very simple materials to carry out this demonstration. These are an aquarium, a bowl, water, salt, dye and a mixer. The demonstration is carried out as follows: we put water, salt and dye in the bowl and mix it well. The salt will increase the density of the water and the dye will help distinguish the salty water. Then we put tap water half way to the aquarium and pour the mixture in the bowl to the aquarium slowly. As a result, the colored salty water sinks down due to its higher density, setting an example of a subsurface current. Natural events occur in very long periods by great dynamic systems, making understanding of them difficult. It is important to use different kinds of materials that address to different senses in geography lessons to promote effective and fun learning. Thus, geography lessons should be based on teaching principles such as 'from concrete to abstract' and 'from near-to-far' principles. Also, teaching methods such as visualization, simulation and experiment should be applied during the lessons. The use of this material will help students comprehend how subsurface currents in the straits, seas and oceans occur. By this simple experiment, students will be able to see what kind of a movement takes place under the Bosporus on which they travel by ferry and they will have the opportunity to carry it out themselves, making the lesson more fun.

Regional-scale drivers of marine nematode distribution in Southern Ocean continental shelf sediments

NASA Astrophysics Data System (ADS)

Hauquier, Freija; Verleyen, Elie; Tytgat, Bjorn; Vanreusel, Ann

2018-07-01

Many marine meiofauna taxa seem to possess cosmopolitan species distributions, despite their endobenthic lifestyle and restricted long-distance dispersal capacities. In light of this paradox we used a metacommunity framework to study spatial turnover in free-living nematode distribution and assess the importance of local environmental conditions in explaining differences between communities in surface and subsurface sediments of the Southern Ocean continental shelf. We analysed nematode community structure in two sediment layers (0-3 cm and 3-5 cm) of locations maximum 2400 km apart. We first focused on a subset of locations to evaluate whether the genus level is sufficiently taxonomically fine-grained to study large-scale patterns in nematode community structure. We subsequently used redundancy and variation partitioning analyses to quantify the unique and combined effects of local environmental conditions and spatial descriptors on genus-level community composition. Macroecological patterns in community structure were highly congruent at the genus and species level. Nematode community composition was highly divergent between both depth strata, likely as a result of local abiotic conditions. Variation in community structure between the different regions largely stemmed from turnover (i.e. genus/species replacement) rather than nestedness (i.e. genus/species loss). The level of turnover among communities increased with geographic distance and was more pronounced in subsurface layers compared to surface sediments. Variation partitioning analysis revealed that both environmental and spatial predictors significantly explained variation in community structure. Moreover, the shared fraction of both sets of variables was high, which suggested a substantial amount of spatially structured environmental variation. Additionally, the effect of space independent of environment was much higher than the effect of environment independent of space, which shows the importance of including spatial descriptors in meiofauna and nematode community ecology. Large-scale assessment of free-living nematode diversity and abundance in the Southern Ocean shelf zone revealed strong horizontal and vertical spatial structuring in response to local environmental conditions, in combination with (most likely) dispersal limitation.

Effect of growth conditions and staining procedure upon the subsurface transport and attachment behaviors of a groundwater protist

USGS Publications Warehouse

Harvey, R.W.; Mayberry, N.; Kinner, N.E.; Metge, D.W.; Novarino, F.

2002-01-01

The transport and attachment behaviors of Spumella guttula (Kent), a nanoflagellate (protist) found in contaminated and uncontaminated aquifer sediments in Cape Cod, Mass., were assessed in flowthrough and static columns and in a field injection-and-recovery transport experiment involving an array of multilevel samplers. Transport of S. guttula harvested from low-nutrient (10 mg of dissolved organic carbon per liter), slightly acidic, granular (porous) growth media was compared to earlier observations involving nanoflagellates grown in a traditional high-nutrient liquid broth. In contrast to the highly retarded (retardation factor of ???3) subsurface transport previously reported for S. guttula, the peak concentration of porous-medium-grown S. guttula traveled concomitantly with that of a conservative (bromide) tracer. About one-third of the porous-medium-grown nanoflagellates added to the aquifer were transported at least 2.8 m downgradient, compared to only ???2% of the broth-grown nanoflagellates. Flowthrough column studies revealed that a vital (hydroethidine [HE]) staining procedure resulted in considerably less attachment (more transport) of S. guttula in aquifer sediments than did a staining-and-fixation procedure involving 4???,6???-diamidino-2-phenylindole (DAPI) and glutaraldehyde. The calculated collision efficiency (???10-2. for porous-medium-grown, DAPI-stained nanoflagellates) was comparable to that observed earlier for the indigenous community of unattached ground-water bacteria that serve as prey. The attachment of HE-labeled S. guttula onto aquifer sediment grains was independent of pH (over the range from pH 3 to 9) suggesting a primary attachment mechanism that may be fundamentally different from that of their prey bacteria, which exhibit sharp decreases in fractional attachment with increasing pH. The high degree of mobility of S. guttula in the aquifer sediments has important ecological implications for the protistan community within the temporally changing plume of organic contaminants in the Cape Cod aquifer.

Diversity of Bacillus-like organisms isolated from deep-sea hypersaline anoxic sediments

PubMed Central

Sass, Andrea M; McKew, Boyd A; Sass, Henrik; Fichtel, Jörg; Timmis, Kenneth N; McGenity, Terry J

2008-01-01

Background The deep-sea, hypersaline anoxic brine lakes in the Mediterranean are among the most extreme environments on earth, and in one of them, the MgCl2-rich Discovery basin, the presence of active microbes is equivocal. However, thriving microbial communities have been detected especially in the chemocline between deep seawater and three NaCl-rich brine lakes, l'Atalante, Bannock and Urania. By contrast, the microbiota of these brine-lake sediments remains largely unexplored. Results Eighty nine isolates were obtained from the sediments of four deep-sea, hypersaline anoxic brine lakes in the Eastern Mediterranean Sea: l'Atalante, Bannock, Discovery and Urania basins. This culture collection was dominated by representatives of the genus Bacillus and close relatives (90% of all isolates) that were investigated further. Physiological characterization of representative strains revealed large versatility with respect to enzyme activities or substrate utilization. Two third of the isolates did not grow at in-situ salinities and were presumably present as endospores. This is supported by high numbers of endospores in Bannock, Discovery and Urania basins ranging from 3.8 × 105 to 1.2 × 106 g-1 dw sediment. However, the remaining isolates were highly halotolerant growing at salinities of up to 30% NaCl. Some of the novel isolates affiliating with the genus Pontibacillus grew well under anoxic conditions in sulfidic medium by fermentation or anaerobic respiration using dimethylsulfoxide or trimethylamine N-oxide as electron acceptor. Conclusion Some of the halophilic, facultatively anaerobic relatives of Bacillus appear well adapted to life in this hostile environment and suggest the presence of actively growing microbial communities in the NaCl-rich, deep-sea brine-lake sediments. PMID:18541011

Diagnostic applications of an optoelectronic device for high temporal resolution of erythrocyte sedimentation (ESR-graphy)

NASA Astrophysics Data System (ADS)

Voeikov, Vladimir L.; Buravleva, Ekaterina; Bulargina, Yulia; Gurfinkel, Youri I.

2001-10-01

An automatic device for high-temporal resolution of the process of erythrocytes sedimentation in blood was designed. The position of the boundary between red blood and plasma is registered each 30 sec in several pipettes simultaneously with +/- 10 mkm precision. Data are processed by a PC and presented as velocity-time curves (ESR-grams) and the curves describing time evolution of the boundary position. ESR-grams demonstrate non-monotonous character of erythrocytes sedimentation in blood. Blood of particular donor being in a stable physiological state taken on different days is characterized by similar ESR-grams. Pathological deviations from a normal physiological state are reflected in the shortening of duration of each process stage and increasing of average sedimentation rate. Intravenous infusion of some medical preparations may lead either to improving (prolonging of macrokinetic stages, decreasing of sedimentation rate), or to worsening of studied parameters depending on an individual. The low extent of blood dilution with saline in vitro lead as a rule to decreasing of sedimentation rate and improving of microkinetic parameters of the process. Adding of highly diluted hydrogen peroxide to blood samples of patients resulted in the improving of sedimentation kinetics. ESR-graphy may widen opportunities of practical medicine in diagnostics, prognostics and drug therapy.

Nutrient Enrichment Increases Mortality of Mangroves

PubMed Central

Lovelock, Catherine E.; Ball, Marilyn C.; Martin, Katherine C.; C. Feller, Ilka

2009-01-01

Nutrient enrichment of the coastal zone places intense pressure on marine communities. Previous studies have shown that growth of intertidal mangrove forests is accelerated with enhanced nutrient availability. However, nutrient enrichment favours growth of shoots relative to roots, thus enhancing growth rates but increasing vulnerability to environmental stresses that adversely affect plant water relations. Two such stresses are high salinity and low humidity, both of which require greater investment in roots to meet the demands for water by the shoots. Here we present data from a global network of sites that documents enhanced mortality of mangroves with experimental nutrient enrichment at sites where high sediment salinity was coincident with low rainfall and low humidity. Thus the benefits of increased mangrove growth in response to coastal eutrophication is offset by the costs of decreased resilience due to mortality during drought, with mortality increasing with soil water salinity along climatic gradients. PMID:19440554

Nutrient enrichment increases mortality of mangroves.

PubMed

Lovelock, Catherine E; Ball, Marilyn C; Martin, Katherine C; C Feller, Ilka

2009-01-01

Nutrient enrichment of the coastal zone places intense pressure on marine communities. Previous studies have shown that growth of intertidal mangrove forests is accelerated with enhanced nutrient availability. However, nutrient enrichment favours growth of shoots relative to roots, thus enhancing growth rates but increasing vulnerability to environmental stresses that adversely affect plant water relations. Two such stresses are high salinity and low humidity, both of which require greater investment in roots to meet the demands for water by the shoots. Here we present data from a global network of sites that documents enhanced mortality of mangroves with experimental nutrient enrichment at sites where high sediment salinity was coincident with low rainfall and low humidity. Thus the benefits of increased mangrove growth in response to coastal eutrophication is offset by the costs of decreased resilience due to mortality during drought, with mortality increasing with soil water salinity along climatic gradients.

Using UAVSAR Interferometry to Quantify the Geometry and Sediment Flux of Slow-moving Landslides in the Eel River Catchment, Northern California

NASA Astrophysics Data System (ADS)

Handwerger, A. L.; Huang, M. H.; Booth, A. M.; Fielding, E. J.

2017-12-01

Slow-moving, deep-seated landslides are highly erosive features that can remain active for periods of decades to centuries, playing a major role in landscape evolution. In the Eel River catchment, Northern California, slow-moving landslides are the primary contributor of sediment to the channel network, delivering >50% of the regional sediment flux despite occupying <10% of the landscape. While detailed, regional-scale measurements of surface kinematics can be made using remote sensing data like interferometric synthetic aperture radar (InSAR) or pixel tracking with SAR or optical images, subsurface measurements including landslide thickness are sparse. As a result, thickness estimates are often approximated from topographic data and globally-derived volume-area scaling relationships that may under- or over-predict landslide volumes by up to an order of magnitude at specific field sites. Furthermore, these relationships assume that the thickness is constant along the entire landslide body. To improve our measurements of landslide volume and kinematics we use repeat-pass InSAR from the NASA/JPL UAVSAR airborne radar acquired with 4 different look directions to quantify 3D surface displacements of 20 landslides across a 550 km2 area. We apply mass conservation techniques to 1) invert for landslide thickness and 2) solve for landslide rheology (i.e. depth-averaged velocity), which enables us to better constrain both volume and sediment flux. Our preliminary results indicate that the landslide thickness is highly variable with changes up to tens of meters along the landslide body. We also find that the landslides have a power law rheology with a plug-flow vertical velocity profile. Estimates of sediment flux contributed by individual landslides ranges from 103 to 104 m3/yr. The application of UAVSAR data represents a major advance from previous InSAR studies in this region and provides one of the first datasets containing 3D displacement measurements for multiple landslides occurring under nearly identical environmental conditions. Future work is aimed at using these subsurface and kinematic data to calculate landslide erosion rates and regional sediment flux and to better understand the controls on landslide dynamics over short- and long-timescales.

Mercury bioaccumulation in aquatic biota along a salinity gradient in the Saint John River estuary.

PubMed

Reinhart, Bethany L; Kidd, Karen A; Curry, R Allen; O'Driscoll, Nelson J; Pavey, Scott A

2018-06-01

Although estuaries are critical habitats for many aquatic species, the spatial trends of toxic methylmercury (MeHg) in biota from fresh to marine waters are poorly understood. Our objective was to determine if MeHg concentrations in biota changed along a salinity gradient in an estuary. Fourspine Stickleback (Apeltes quadracus), invertebrates (snails, amphipods, and chironomids), sediments, and water were collected from ten sites along the Saint John River estuary, New Brunswick, Canada in 2015 and 2016, with salinities ranging from 0.06 to 6.96. Total mercury (proxy for MeHg) was measured in whole fish and MeHg was measured in a subset of fish, pooled invertebrates, sediments, and water. Stable sulfur (δ 34 S), carbon (δ 13 C), and nitrogen (δ 15 N) isotope values were measured to assess energy sources (S, C) and relative trophic level (N). There were increases in biotic δ 13 C and δ 34 S from fresh to more saline sites and these measures were correlated with salinity. Though aqueous MeHg was higher at the freshwater than more saline sites, only chironomid MeHg increased significantly with salinity. In the Saint John River estuary, there was little evidence that MeHg and its associated risks increased along a salinity gradient. Copyright © 2018. Published by Elsevier B.V.

Determination of the dissolved anion composition of ancient lakes from fossil ostracodes.

USGS Publications Warehouse

Forester, R.M.

1986-01-01

The mineralogy of evaporite and other precipitated minerals has provided traditional sources of information about the major dissolved ion composition of ancient lakes. The paleocompositional resolving power of these methods is generally greatest in high-salinity lakes. Ostracodes live in dilute saline lakes where a species occurrence is determined by the relative proportions of the lake's major dissolved anions, so that each species describes specific areas on an anion trilinear diagram. The upper salinity tolerance of each species depends upon the types of major anions in solution and is therefore anion-specific. Knowledge about both anion and anion-salinity tolerances of an ostracode may ultimately provide a means of estimating absolute anion concentrations in paleolakes. Because ostracodes are common fossils in lake sediments, they provide an important new source of original paleocompositional information suitable for many geologic, climatic, geochemical, and paleontologic studies. -from Author

Do peat amendments to oil sands wet sediments affect Carex aquatilis biomass for reclamation success?

PubMed

Roy, Marie-Claude; Mollard, Federico P O; Foote, A Lee

2014-06-15

The oil sands industries of Alberta (Canada) have reclamation objectives to return the mined landscape to equivalent pre-disturbance land capability. Industrial operators are charged with reclaiming a vast landscape of newly exposed sediments on saline-sodic marine-shales sediments. Incorporated in these sediments are by-products resulting from bitumen extraction (consolidated tailings (CT), tailings-sand (TS), and oil sands processed water (OSPW)). A sedge community dominated by Carex aquatilis was identified as a desirable and representative late-succession community for wet-meadow zones of oil sands-created marshes. However, the physical and chemical conditions, including high salinity and low nutrient content of CT and TS sediments suppress plant growth and performance. We experimentally tested the response of C. aquatilis to amendments with peat-mineral-mix (PM) on oil sand sediments (CT and TS). In a two factorial design experiment, we also tested the effects of OSPW on C. aquatilis. We assessed survival, below- and aboveground biomass, and physiology (chlorophyll a fluorescence). We demonstrated that PM amendments to oil sands sediments significantly increased C. aquatilis survival as well as below and aboveground biomass. The use of OSPW significantly reduced C. aquatilis belowground biomass and affected its physiological performance. Due to its tolerance and performance, we verified that C. aquatilis was a good candidate for use in reclaiming the wet-meadow zones of oil sands-created marshes. Ultimately, amending CT and TS with PM expedited the reclamation of the wetland to a C. aquatilis-community which was similar in gross structure to undisturbed wetlands of the region. Copyright © 2014 Elsevier Ltd. All rights reserved.

The present environmental scenario of the Nador Lagoon (Morocco).

PubMed

Ruiz, F; Abad, M; Olías, M; Galán, E; González, I; Aguilá, E; Hamoumi, N; Pulido, I; Cantano, M

2006-10-01

In this paper, we present a multivariate approach (waters, sediments, microfauna) concerning the environmental state of the Nador Lagoon (NE Morocco). The normal water quality parameters (salinity, pH, nutrients) of the dominant marine flows are altered by local fecal water effluents, urban discharges, sewages derived from a water treatment station, and residues originated in a slaughterhouse. The geochemical analyses carried out in surficial sediment samples show very high concentrations of all metals studied near an old iron mine and moderate contents between Nador and its treatment station. Ostracods are good bioindicators of these environmental impacts, with the presence of a highly brackish assemblage in the quieter, more confined areas or the appearance of opportunistic species under hypoxic conditions. In addition, these microcrustaceans are absent in polluted bottom sediments or areas with high hydrodynamic gradients, whereas they decrease in both density and diversity if the subaerial exposure increases.

Microcosm studies of subsurface PAH-degrading bacteria from a former manufactured gas plant

NASA Astrophysics Data System (ADS)

Durant, Neal D.; Wilson, Liza P.; Bouwer, Edward J.

1995-01-01

A study was conducted to evaluate the potential for natural in situ biodegradation of polycyclic aromatic hydrocarbons (PAH's) in the subsurface at the site of a former manufactured gas plant. Fifty-seven samples of unconsolidated subsurface sediments were aseptically obtained from five boreholes across the site. Bacteria capable of aerobically degrading PAH's without an acclimation period were detected throughout shallow (2.7 m) and deep (24.7 m) areas of the subsurface in both relatively clean (<20 μg L -1 naphthalene) and contaminated (4400 μg L -1 naphthalene) zones. Significant ( p < 0.05) quantities of naphthalene (8±3% to 43±7%) and/or phenanthrene (3±1% to 31±3%) were mineralized in sediment-groundwater microcosms during 4 weeks of aerobic incubation at 22°C. Three samples out of 11 were able to aerobically mineralize significant quantities of benzene (6±2% to 24±1%). Of 11 samples tested for anaerobic mineralization, naphthalene biodegradation (7±1% to 13±2%) in the presence of N03 was observed in two samples. Compound removals were first order with respect to substrate concentration during the first 10-15 days of incubation. Compound biodegradation plateaued in the later stages of incubation (15-40 days), most likely from diminishing bioavailability and nutrient and oxygen depletion. Population densities in the sediments were typically low, with viable aerobic counts ranging from 0 to 10 5 CFU gdw -1, viable anaerobic counts ranging from 0 to 104 CFU gdw -1, and total counts (AODC) usually 10-fold greater than viable counts. Total counts exhibited a strong ( p < 0.01) positive correlation with sample grain size. Viable aerobic and anaerobic populations commonly occurred in the same sample, suggesting the presence of facultative anaerobes. Bacteria were metabolically active in samples from groundwaters with low pH (3.7) and high naphthalene concentrations (11,000 μg L -1). Data from these enumeration and microcosm studies suggest that natural in situ biodegradation is occurring at the site.

Recent experimental data may point to a greater role for osmotic pressures in the subsurface

USGS Publications Warehouse

Neuzil, C.E.; Provost, A.M.

2009-01-01

Uncertainty about the origin of anomalous fluid pressures in certain geologic settings has caused researchers to take a second look at osmosis, or flow driven by chemical potential differences, as a pressure‐generating process in the subsurface. Interest in geological osmosis has also increased because of an in situ experiment by Neuzil (2000) suggesting that Pierre Shale could generate large osmotic pressures when highly compacted. In the last few years, additional laboratory and in situ experiments have greatly increased the number of data on osmotic properties of argillaceous formations, but they have not been systematically examined. In this paper we compile these data and explore their implications for osmotic pressure generation in subsurface systems. Rather than base our analysis on osmotic efficiencies, which depend strongly on concentration, we calculated values of a quantity we term osmotic specific surface area (Aso) that, in principle, is a property of the porous medium only. The Aso values are consistent with a surprisingly broad spectrum of osmotic behavior in argillaceous formations, and all the formations tested exhibited at least a modest ability to generate osmotic pressure. It appears possible that under appropriate conditions some formations can be highly effective osmotic membranes able to generate osmotic pressures exceeding 30 MPa (3 km of head) at porosities as high as ∼0.1 and pressures exceeding 10 MPa at porosities as high as ∼0.2. These findings are difficult to reconcile with the lack of compelling field evidence for osmotic pressures, and we propose three explanations for the disparity: (1) Our analysis is flawed and argillaceous formations are less effective osmotic membranes than it suggests; (2) the necessary subsurface conditions, significant salinity differences within intact argillaceous formations, are rare; or (3) osmotic pressures are unlikely to be detected and are not recognized when encountered. The last possibility, that osmotic pressures routinely escape detection or are attributed to other mechanisms, has important implications for understanding subsurface flow regimes.

Targeting sediment management strategies using sediment quantification and fingerprinting methods

NASA Astrophysics Data System (ADS)

Sherriff, Sophie; Rowan, John; Fenton, Owen; Jordan, Phil; hUallacháin, Daire Ó.

2016-04-01

Cost-effective sediment management is required to reduce excessive delivery of fine sediment due to intensive land uses such as agriculture, resulting in the degradation of aquatic ecosystems. Prioritising measures to mitigate dominant sediment sources is, however, challenging, as sediment loss risk is spatially and temporally variable between and within catchments. Fluctuations in sediment supply from potential sources result from variations in land uses resulting in increased erodibility where ground cover is low (e.g., cultivated, poached and compacted soils), and physical catchment characteristics controlling hydrological connectivity and transport pathways (surface and/or sub-surface). Sediment fingerprinting is an evidence-based management tool to identify sources of in-stream sediments at the catchment scale. Potential sediment sources are related to a river sediment sample, comprising a mixture of source sediments, using natural physico-chemical characteristics (or 'tracers'), and contributions are statistically un-mixed. Suspended sediment data were collected over two years at the outlet of three intensive agricultural catchments (approximately 10 km2) in Ireland. Dominant catchment characteristics were grassland on poorly-drained soils, arable on well-drained soils and arable on moderately-drained soils. High-resolution (10-min) calibrated turbidity-based suspended sediment and discharge data were combined to quantify yield. In-stream sediment samples (for fingerprinting analysis) were collected at six to twelve week intervals, using time-integrated sediment samplers. Potential sources, including stream channel banks, ditches, arable and grassland field topsoils, damaged road verges and tracks were sampled, oven-dried (<40oC) and sieved (125 microns). Soil and sediment samples were analysed for mineral magnetics, geochemistry and radionuclide tracers, particle size distribution and soil organic carbon. Tracer data were corrected to account for particle size and organic matter selectivity processes. Contributions from potential sources type groups (channel - ditches and stream banks, roads - road verges and tracks, fields - grassland and arable topsoils) were statistically un-mixed using FR2000, an uncertainty-inclusive algorithm, and combined with sediment yield data. Results showed sediment contributions from channel, field and road groups were 70%, 25% and 5% in the poorly-drained catchment, 59%, 22% and 19% in the well-drained catchment, and 17%, 74% and 9% in the moderately-drained catchment. Higher channel contributions in the poorly-drained catchment were attributed to bank erosion accelerated by the rapid diversion of surface runoff into channels, facilitated by surface and sub-surface artificial drainage networks, and bank seepage from lateral pressure gradients due to confined groundwater. Despite the greatest proportion of arable soils in the well-drained catchment, this source was frequently hydrologically disconnected as well-drained soils largely infiltrated rainfall and prevented surface soil erosion. Periods of high and intense rainfall were associated with greater proportions of field losses in the well-drained catchment likely due to infiltration exceeding the saturated hydraulic conductivity of soils and establishment of surface hydrological connectivity. Losses from field topsoils dominated in the moderately-drained catchment as antecedent soil wetness maintained surface flow pathways and coincided with low groundcover on arable soils. For cost-effective management of sediment pressures to aquatic ecosystems, catchment specific variations in sediment sources must be considered.

Climate variability in an estuary: Effects of riverflow on San Francisco Bay

USGS Publications Warehouse

Peterson, David H.; Cayan, Daniel R.; Festa, John F.; Nichols, Frederic H.; Walters, Roy A.; Slack, James V.; Hager, Stephen E.; Schemel, Laurence E.; Peterson, David H.

1989-01-01

A simple conceptual model of estuarine variability in the context of climate forcing has been formulated using up to 65 years of estimated mean-monthly delta flow, the cumulative freshwater flow to San Francisco Bay from the Sacramento-San Joaquin River, and salinity observations near the mouth, head, mid-estuary, and coastal ocean. Variations in delta flow, the principal source of variability in the bay, originate from anomalous changes in northern and central California streamflow, much of which is linked to anomalous winter sea level pressure (“CPA”) in the eastern Pacific. In years when CPA is strongly negative, precipitation in the watershed is heavy, delta flow is high, and the bay's salinity is low; similarly, when CPA is strongly positive, precipitation is light, delta flow is low, and the bay's salinity is high. Thus the pattern of temporal variability in atmospheric pressure anomalies is reflected in the streamflow, then in delta flow, then in estuarine variability. Estuarine salinity can be characterized by river to ocean patterns in annual cycles of salinity in relation to delta flow. Salinity (total dissolved solids) data from the relatively pristine mountain streams of the Sierra Nevada show that for a given flow, one observes higher salinities during the rise in winter flow than on the decline. Salinity at locations throughout San Francisco Bay estuary are also higher during the rise in winter flow than the decline (because it takes a finite time for salinity to fully respond to changes in freshwater flow). In the coastal ocean, however, the annual pattern of sea surface salinity is reversed: lower salinities during the rise in winter flow than on the decline due to effects associated with spring upwelling. Delta flow in spring masks these effects of coastal upwelling on estuarine salinity, including near the mouth of the estuary and, in fact, explains in a statistical sense 86 percent of the variance in salinity at the mouth of the estuary. Some of the variations in residual salinity in the bay not explained by delta flow appear to correlate with variability in coastal ocean properties. Interestingly CPA correlates also with anomalous sea surface salinity in the coastal ocean adjacent to the bay, especially in spring (albeit through a different mechanism than streamflow). For instance, when the atmospheric pressure anomaly as indicated for streamflow is high, the coastal ocean upper-layer Ekman transport is probably in the offshore direction resultingin higher sea surface salinities along the coast (with a phase lag). This circulation corresponds, in direction, to density driven estuarine circulation. In contrast a low atmospheric pressure regime leads to an onshore surface transport, and therefore opposes estuarine circulation. The influence of variations in delta flow on estuarine/phytoplankton/biochemical dynamics can be illustrated with numerical simulation models. For example, when riverflow is high the resulting low estuarine water residence time limits phytoplankton biomass and the observed effects of phytoplankton productivity on estuarine biochemistry are minimal. When riverflow is low but suspended sediment concentrations are high, light becomes a more important factor limiting phytoplankton biomass than residence time and effects of phytoplankton productivity on estuarine biochemistry are also minimal. When both riverflow and suspended sediment concentrations are low, phytoplankton biomass increases and phytoplankton productivity emerges as a major control on estuarine biochemistry: phytoplankton activity draws down and maintains very low ambient concentrations of dissolved silica and partial pressures of carbon dioxide (shifting pH to higher values). However, after an extended period of very low delta flow the major controls on estuarine biochemistry appear to change, possibly because benthic exchange processes (both sources and sinks) strengthen as salinity rises and benthic filter-feeding invertebrates migrate upstream with increasing salinity.

Feeding a subsurface biosphere: radiolysis and abiogenic energy sources

NASA Astrophysics Data System (ADS)

Onstott, T.

Noble gas analyses of ground water collected from the deep, fractured, basaltic andesite and quartzite Archean strata in South Africa suggest subsurface residence times ranging from tens to hundreds of millions of years. Hydraulically isolated compartments of highly saline water contain hundreds of μM concentrations of gas comprised primarily of C1-4 hydrocarbons, H2 and He, with minor Ar and N .2 Carbon and hydrogen isotopic analyses of the hydrocarbons suggest an abiogenic origin com atible with surface catalysed reductive assimilation (i.e. Fischer-Tropschp synthesis). H2 and He data suggest that the H2 is generated by subsurface radiolysis of water. One sample of a saline, isolated water/gas pocket agrees exactly with that predicted by radioactive decay of U, Th, K in the host rock and indicates a subsurface H2 production rate of 0.1 to 1 nM/yr. Other samples yielded less H2 than predicted and require a sink for this H2 . Possible sinks include microbial H2 oxidation and abiotic formation of hydrocarbons at rates slightly less than the H2 production rate. Highly diffusive H2 is essential for life in deep subsurface environments where only trace amounts of organic carbon exist. Lithoautotrophic microbes can acquire energy from the redox reactions involving H2 with other electron acceptors (Fe3 +, SO4 2 - or CO2 ), to synthesis organic carbon and can be fully independent of solar-driven photosynthesis. The microbial abundance in many of these ground water samples, however, is below our detection limit (<5000 cells/ml). This contrasts with shallow sedimentary aquifers where H2 levels of tens of nM are regulated by the coexistence of autotrophs/lithotrophs and heterotrophs for maximum efficiency of H2 utilization. The excessive H2 found in deep crustal environments implies that these microbial ecosystems are electron-acceptor and or substrate limited. The oxidants generated by water radiolysis interact with the reduced solid phases in the rock matrix, e.g. pyrite, producing potential electron acceptors, e.g. Fe3 +, that may be readily available for consumption by microbial communities than H . Nitrogen doesn't appear to be2 limited, because ammonia concentrations range upwards to tens of μM, but its origin remains a mystery. The unused H2 , CH4 and He continue to migrate upward to shallow aquifers. Microbial H2 oxidation may dominate over Fischer-Tropsch reactions in crustal environments where formation temperatures are <120o C; and vice versa for deeper crustal environments. This H2 cycle should be present on extraterrestrial bodies, producing potential chemical energy and crustal scale diffusive fluxes from the interaction subsurface ice/water and radiogenic decay.

Survival and development of horseshoe crab (Limulus polyphemus) embryos and larvae in hypersaline conditions.

PubMed

Ehlinger, Gretchen S; Tankersley, Richard A

2004-04-01

The horseshoe crab Limulus polyphemus spawns in the mid- to upper intertidal zone where females deposit eggs in nests below the sediment surface. Although adult crabs generally inhabit subtidal regions of estuaries with salinities from 5 to 34 ppt, developing embryos and larvae within nests are often exposed to more extreme conditions of salinity and temperature during summer spawning periods. To test whether these conditions have a negative impact on early development and survival, we determined development time, survival, and molt cycle duration for L. polyphemus embryos and larvae raised at 20 combinations of salinity (range: 30-60 ppt) and temperature (range: 25-40 degrees C). Additionally, the effect of hyperosmotic and hypoosmotic shock on the osmolarity of the perivitelline fluid of embryos was determined at salinities between 5 and 90 ppt. The embryos completed their development and molted at salinities below 60 ppt, yet failed to develop at temperatures of 35 degrees C or higher. Larval survival was high at salinities of 10-70 ppt but declined significantly at more extreme salinities (i.e., 5, 80, and 90 ppt). Perivitelline fluid remained nearly isoosmotic over the range of salinities tested. Results indicate that temperature and salinity influence the rate of crab development, but only the extremes of these conditions have an effect on survival.

Algae Reefs in Shark Bay, Western Australia, Australia

NASA Technical Reports Server (NTRS)

1990-01-01

Numerous algae reefs are seen in Shark Bay, Western Australia, Australia (26.0S, 113.5E) especially in the southern portions of the bay. The south end is more saline because tidal flow in and out of the bay is restricted by sediment deposited at the north and central end of the bay opposite the mouth of the Wooramel River. This extremely arid region produces little sediment runoff so that the waters are very clear, saline and rich in algae.

A foraminiferal δ(18)O record covering the last 2,200 years.

PubMed

Taricco, Carla; Alessio, Silvia; Rubinetti, Sara; Vivaldo, Gianna; Mancuso, Salvatore

2016-06-21

Thanks to the precise core dating and the high sedimentation rate of the drilling site (Gallipoli Terrace, Ionian Sea) we were able to measure a foraminiferal δ(18)O series covering the last 2,200 years with a time resolution shorter than 4 years. In order to support the quality of this data-set we link the δ(18)O values measured in the foraminifera shells to temperature and salinity measurements available for the last thirty years covered by the core. Moreover, we describe in detail the dating procedures based on the presence of volcanic markers along the core and on the measurement of (210)Pb and (137)Cs activity in the most recent sediment layers. The high time resolution allows for detecting a δ(18)O decennial-scale oscillation, together with centennial and multicentennial components. Due to the dependence of foraminiferal δ(18)O on environmental conditions, these oscillations can provide information about temperature and salinity variations in past millennia. The strategic location of the drilling area makes this record a unique tool for climate and oceanographic studies of the Central Mediterranean.

Microbial diversity in Cenozoic sediments recovered from the Lomonosov Ridge in the Central Arctic basin.

PubMed

Forschner, Stephanie R; Sheffer, Roberta; Rowley, David C; Smith, David C

2009-03-01

The current understanding of microbes inhabiting deeply buried marine sediments is based largely on samples collected from continental shelves in tropical and temperate latitudes. The geographical range of marine subsurface coring was expanded during the Integrated Ocean Drilling Program Arctic Coring Expedition (IODP ACEX). This expedition to the ice-covered central Arctic Ocean successfully cored the entire 428 m sediment stack on the Lomonosov Ridge during August and September 2004. The recovered cores vary from siliciclastic sediment low in organic carbon (< 0.2%) to organic rich ( approximately 3%) black sediments that rapidly accumulated in the early middle Eocene. Three geochemical environments were characterized based on chemical analyses of porewater: an upper ammonium oxidation zone, a carbonate dissolution zone and a deep (> 200 m below sea floor) sulfate reduction zone. The diversity of microbes within each zone was assessed using 16S rRNA phylogenetic markers. Bacterial 16S rRNA genes were successfully amplified from each of the biogeochemical zones, while archaea was only amplified from the deep sulfate reduction zone. The microbial communities at each zone are phylogenetically different and are most closely related to those from other deep subsurface environments.

Diagnosis of In Situ Metabolic State and Rates of Microbial Metabolism During In Situ Uranium Bioremediation with Molecular Techniques

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lovley, Derek R.

2012-11-28

The goal of these projects was to develop molecule tools to tract the metabolic activity and physiological status of microorganisms during in situ uranium bioremediation. Such information is important in able to design improved bioremediation strategies. As summarized below, the research was highly successful with new strategies developed for estimating in situ rates of metabolism and diagnosing the physiological status of the predominant subsurface microorganisms. This is a first not only for groundwater bioremediation studies, but also for subsurface microbiology in general. The tools and approaches developed in these studies should be applicable to the study of microbial communities inmore » a diversity of soils and sediments.« less

Strong sorption of PCBs to nanoplastics, microplastics, carbon nanotubes, and fullerenes.

PubMed

Velzeboer, I; Kwadijk, C J A F; Koelmans, A A

2014-05-06

The presence of microplastic and carbon-based nanoparticles in the environment may have implications for the fate and effects of traditional hydrophobic chemicals. Here we present parameters for the sorption of 17 CB congeners to 10-180 μm sized polyethylene (micro-PE), 70 nm polystyrene (nano-PS), multiwalled carbon nanotubes (MWCNT), fullerene (C60), and a natural sediment in the environmentally relevant 10(-5)-10(-1) μg L(-1) concentration range. Effects of salinity and sediment organic matter fouling were assessed by measuring the isotherms in fresh- and seawater, with and without sediment present. Sorption to the "bulk" sorbents sediment organic matter (OM) and micro-PE occurred through linear hydrophobic partitioning with OM and micro-PE having similar sorption affinity. Sorption to MWCNT and nano-PS was nonlinear. PCB sorption to MWCNT and C60 was 3-4 orders of magnitude stronger than to OM and micro-PE. Sorption to nano-PS was 1-2 orders of magnitude stronger than to micro-PE, which was attributed to the higher aromaticity and surface-volume ratio of nano-PS. Organic matter effects varied among sorbents, with the largest OM fouling effect observed for the high surface sorbents MWCNT and nano-PS. Salinity decreased sorption for sediment and MWCNT but increased sorption for the polymers nano-PS and micro-PE. The exceptionally strong sorption of (planar) PCBs to C60, MWCNT, and nano-PS may imply increased hazards upon membrane transfer of these particles.

Soil characteristics of sediment-amended baldcypress (Taxodium distichum) swamps of coastal Louisiana

USGS Publications Warehouse

Jiang, Ming; Middleton, Beth A.

2011-01-01

Amendments of sediment from dredging activities have played an important role in raising the elevation of sinking coastal wetlands. This study compared the soil characteristics of sediment- amended coastal swamps in the Barataria Preserve unit of Jean Lafitte National Historical Park and Preserve with natural swamps along Bayou des Familles. The sandy sediment amendments used in the coastal forests had different soil texture and characteristics than the more organic soils of the natural swamps. Three years after the application of these sediments on the sediment-amended swamps, dewatering and compaction of the sediment had occurred but the sediment still had high salinity and bulk density, and low organic matter content. The two sediment-amended swamps differed from each other in that Site 1 had a higher elevation (mean = 25 cm higher) and drier soil than Site 2. The effects of sediment in coastal forested wetlands require separate consideration from studies of salt marshes, e.g., the weight of the sediment might damage tree roots, or the amendments might influence soil stability during storms in a different way. Generally, this study suggests that shallower depths of sediment are more likely to yield environments beneficial to these sinking baldcypress swamps in coastal Louisiana.

Hydrocarbon composition and concentrations in the Gulf of Mexico sediments in the 3 years following the Macondo well blowout.

PubMed

Babcock-Adams, Lydia; Chanton, Jeffrey P; Joye, Samantha B; Medeiros, Patricia M

2017-10-01

In April of 2010, the Macondo well blowout in the northern Gulf of Mexico resulted in an unprecedented release of oil into the water column at a depth of approximately 1500 m. A time series of surface and subsurface sediment samples were collected to the northwest of the well from 2010 to 2013 for molecular biomarker and bulk carbon isotopic analyses. While no clear trend was observed in subsurface sediments, surface sediments (0-3 cm) showed a clear pattern with total concentrations of n-alkanes, unresolved complex mixture (UCM), and petroleum biomarkers (terpanes, hopanes, steranes) increasing from May to September 2010, peaking in late November 2010, and strongly decreasing in the subsequent years. The peak in hydrocarbon concentrations were corroborated by higher organic carbon contents, more depleted Δ 14 C values and biomarker ratios similar to those of the initial MC252 crude oil reported in the literature. These results indicate that at least part of oil discharged from the accident sedimented to the seafloor in subsequent months, resulting in an apparent accumulation of hydrocarbons on the seabed by the end of 2010. Sediment resuspension and transport or biodegradation may account for the decrease in sedimented oil quantities in the years following the Macondo well spill. Copyright © 2017 Elsevier Ltd. All rights reserved.

Suspended-sediment dynamics in the tidal reach of a San Francisco Bay tributary

USGS Publications Warehouse

Shellenbarger, Gregory; Downing-Kunz, Maureen; Schoellhamer, David H.

2015-01-01

To better understand suspended-sediment transport in a tidal slough adjacent to a large wetland restoration project, we deployed continuously-measuring temperature, salinity, depth, turbidity, and velocity sensors since 2010, and added a dissolved-oxygen sensor in 2012, at a near-bottom location in Alviso Slough (Alviso, California USA). Alviso Slough is the downstream reach of the Guadalupe River and flows into the far southern end of San Francisco Bay. River flow is influenced by the Mediterranean climate, with high flows correlated to episodic winter storms (~85 m3 s-1) and low base flow during the summer (~0.85 m3 s-1). Storms and associated runoff have the greatest influence on sediment flux. Strong spring tides promote upstream sediment flux and weak neap tides have only a small net flux. During neap tides, stratification likely suppresses sediment transport during weaker flood and ebb tides.

Controlling effects of mesoscale eddies on thermohaline structure and in situ chlorophyll distribution in the western North Pacific

NASA Astrophysics Data System (ADS)

Gao, Wei; Wang, Zhenyan; Zhang, Kainan

2017-11-01

Based on the conductivity, temperature and depth (CTD) data collected at 93 hydrographic stations during a marine cruise and on contemporary satellite altimeter observations, a series of eddies have been observed passing over the stratified upper water of the Parece Vela Basin. The results from hydrographic measurements and in situ chlorophyll fluorescence measurements have revealed that these eddies exerted significant controlling effects on the thermohaline structure and chlorophyll distribution, especially on the prevalent subsurface chlorophyll maximum layer (SCML). Based on these observations and particulate beam attenuation coefficient (cp) data, the in situ phytoplankton bloom around the pycnocline can be largely attributable to the formation of a well-developed SCML in the studied system. The uplift of the cold subsurface water within the cyclone, shoaling the pycnocline to a shallower layer, resulted in a low-temperature anomaly and different salinity anomalies at different depths. This uplift in the cyclone further caused the SCML to appear at a shallower depth with a higher in situ chlorophyll concentration than that in the normal domain. Conversely, the sinking of the warm surface water to the subsurface layer within the anticyclone depressed the pycnocline to a deeper layer and generated a high-temperature anomaly and opposite salinity anomalies compared with the cyclone. The sinking of the pycnocline within the anticyclone considerably influenced the characteristics of the SCML, which had a deeper depth and a lower in situ chlorophyll concentration than that of the normal sea. This study contributes rare quasi-synchronous CTD observations capturing mesoscale eddies and provides valuable descriptions of the variations in the SCML under the influence of mesoscale eddies based on in situ optical measurements from the seldom-discussed western North Pacific.

Chemistry and Environments of Dolomitization —A Reappraisal

NASA Astrophysics Data System (ADS)

Machel, Hans-G.; Mountjoy, Eric W.

1986-05-01

Dolomitization of calcium carbonate can best be expressed by mass transfer reactions that allow for volume gain, preservation, or loss during the replacement process. Experimental data, as well as textures and porosities of natural dolomites, indicate that these reactions must include CO 32- and/or HCO 3- supplied by the solution to the reaction site. Since dolomite formation is thermodynamically favoured in solutions of (a) low Ca 2+/Mg 2+ ratios, (b) low Ca 2+/CO 32- (or Ca 2+/HCO 3-) ratios, and (c) high temperatures, the thermodynamic stability for the system calcite-dolomite-water is best represented in a diagram with these three parameters as axes. Kinetic considerations favour dolomitization under the same conditions, and additionally at low as well as at high salinities. If thermodynamic and kinetic considerations are combined, the following conditions and environments are considered chemically conducive to dolomitization: (1) environments of any salinity above thermodynamic and kinetic saturation with respect to dolomite (i.e. freshwater/seawater mixing zones, normal saline to hypersaline subtidal environments, hypersaline supratidal environments, schizohaline environments); (2) alkaline environments (i.e. those under the influence of bacterial reduction and/or fermentation processes, or with high input of alkaline continental groundwaters); and (3) many environments with temperatures greater than about 50°C (subsurface and hydrothermal environments). Whether or not massive, replacive dolostones are formed in these environments depends on a sufficient supply of magnesium, and thus on hydrologic parameters. Most massive dolostones, particularly those consisting of shallowing-upward cycles and capped by regional unconformities, have been interpreted to be formed according to either the freshwater/seawater mixing model or the sabkha with reflux model. However, close examination of natural mixing zones and exposed evaporitic environments reveals that the amounts of dolomite formed are small and texturally different from the massive, replacive dolostones commonly inferred to have been formed in these environments. Many shallowing-upward sequences are devoid of dolomite. It is therefore suggested that massive, replacive dolomitization during exposure is rare, if not impossible. Rather, only small quantities of dolomite (cement or replacement) are formed which may act as nuclei for later subsurface dolomitization. Alternatively, large-scale dolomitization may take place in shallow subtidal environments of moderate to strong hypersalinity. The integration of stratigraphic, petrographic, geochemical, and hydrological parameters suggests that the only environments capable of forming massive, replacive dolostones on a large scale are shallow, hypersaline subtidal environments and certain subsurface environments.

Fern Spore Longevity in Saline Water: Can Sea Bottom Sediments Maintain a Viable Spore Bank?

PubMed Central

de Groot, G. Arjen; During, Heinjo

2013-01-01

Freshwater and marine sediments often harbor reservoirs of plant diaspores, from which germination and establishment may occur whenever the sediment falls dry. Therewith, they form valuable records of historical inter- and intraspecific diversity, and are increasingly exploited to facilitate diversity establishment in new or restored nature areas. Yet, while ferns may constitute a considerable part of a vegetation’s diversity and sediments are known to contain fern spores, little is known about their longevity, which may suffer from inundation and - in sea bottoms - salt stress. We tested the potential of ferns to establish from a sea or lake bottom, using experimental studies on spore survival and gametophyte formation, as well as a spore bank analysis on sediments from a former Dutch inland sea. Our experimental results revealed clear differences among species. For Asplenium scolopendrium and Gymnocarpium dryopteris, spore germination was not affected by inundated storage alone, but decreased with rising salt concentrations. In contrast, for Asplenium trichomanes subsp. quadrivalens germination decreased following inundation, but not in response to salt. Germination rates decreased with time of storage in saline water. Smaller and less viable gametophytes were produced when saline storage lasted for a year. Effects on germination and gametophyte development clearly differed among genotypes of A. scolopendrium. Spore bank analyses detected no viable spores in marine sediment layers. Only two very small gametophytes (identified as Thelypteris palustris via DNA barcoding) emerged from freshwater sediments. Both died before maturation. We conclude that marine, and likely even freshwater sediments, will generally be of little value for long-term storage of fern diversity. The development of any fern vegetation on a former sea floor will depend heavily on the deposition of spores onto the drained land by natural or artificial means of dispersal. PMID:24223951

Evolution of Planetary Ice-Ocean Systems: Effects of Salinity

NASA Astrophysics Data System (ADS)

Allu Peddinti, D.; McNamara, A. K.

2015-12-01

Planetary oceanography is enjoying renewed attention thanks to not only the detection of several exoplanetary ocean worlds but also due to the expanding family of ocean worlds within our own star system. Our solar system is now believed to host about nine ocean worlds including Earth, some dwarf planets and few moons of Jupiter and Saturn. Amongst them, Europa, like Earth is thought to have an ice Ih-liquid water system. However, the thickness of the Europan ice-ocean system is much larger than that of the Earth. The evolution of this system would determine the individual thicknesses of the ice shell and the ocean. In turn, these thicknesses can alter the course of evolution of the system. In a pure H2O system, the thickness of the ice shell would govern if heat loss occurs entirely by conduction or if the shell begins to convect as it attains a threshold thickness. This switch between conduction-convection regimes could determine the longevity of the subsurface ocean and hence define the astrobiological potential of the planetary body at any given time. In reality, however, the system is not pure water ice. The detected induced magnetic field infers a saline ocean layer. Salts are expected to act as an anti-freeze allowing a subsurface ocean to persist over long periods but the amount of salts would determine the extent of that effect. In our current study, we use geodynamic models to examine the effect of salinity on the evolution of ice-ocean system. An initial ocean with different salinities is allowed to evolve. The effect of salinity on thickness of the two layers at any time is examined. We also track how salinity controls the switch between conductive-convective modes. The study shows that for a given time period, larger salinities can maintain a thick vigorously convecting ocean while the smaller salinities behave similar to a pure H2O system leading to a thick convecting ice-shell. A range of salinities identified can potentially predict the current state and possibly the intermediate states of the ice-ocean system as it evolved over time. This could help constrain the endogenic contribution of salts to the surface chemistry.

Briefing on geological sequestration

EPA Science Inventory

Geological sequestration (GS) is generally recognized as the injection and long-term (e.g., hundreds to thousands of years) trapping of gaseous, liquid or supercritical carbon dioxide (CO2) in subsurface media – primarily saline formations, depleted or nearly depleted oil and gas...

Exploring Genomic Diversity Using Metagenomics of Deep-Sea Subsurface Microbes from the Louisville Seamount and the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Tully, B. J.; Sylvan, J. B.; Heidelberg, J. F.; Huber, J. A.

2014-12-01

There are many limitations involved with sampling microbial diversity from deep-sea subsurface environments, ranging from physical sample collection, low microbial biomass, culturing at in situ conditions, and inefficient nucleic acid extractions. As such, we are continually modifying our methods to obtain better results and expanding what we know about microbes in these environments. Here we present analysis of metagenomes sequences from samples collected from 120 m within the Louisville Seamount and from the top 5-10cm of the sediment in the center of the south Pacific gyre (SPG). Both systems are low biomass with ~102 and ~104 cells per cm3 for Louisville Seamount samples analyzed and the SPG sediment, respectively. The Louisville Seamount represents the first in situ subseafloor basalt and the SPG sediments represent the first in situ low biomass sediment microbial metagenomes. Both of these environments, subseafloor basalt and sediments underlying oligotrophic ocean gyres, represent large provinces of the seafloor environment that remain understudied. Despite the low biomass and DNA generated from these samples, we have generated 16 near complete genomes (5 from Louisville and 11 from the SPG) from the two metagenomic datasets. These genomes are estimated to be between 51-100% complete and span a range of phylogenetic groups, including the Proteobacteria, Actinobacteria, Firmicutes, Chloroflexi, and unclassified bacterial groups. With these genomes, we have assessed potential functional capabilities of these organisms and performed a comparative analysis between the environmental genomes and previously sequenced relatives to determine possible adaptations that may elucidate survival mechanisms for these low energy environments. These methods illustrate a baseline analysis that can be applied to future metagenomic deep-sea subsurface datasets and will help to further our understanding of microbiology within these environments.

Hydrogeochemical zonation in intertidal salt marsh sediments: evidence of positive plant-soil feedback?

NASA Astrophysics Data System (ADS)

Moffett, K. B.; Dittmar, J.; Seyfferth, A.; Fendorf, S.; Gorelick, S.

2012-12-01

Surface and subsurface environments are linked by the biogeochemical activity in near-surface sediment and by the hydrological fluxes that mobilize its reagents and products. A particularly dynamic and interesting setting to study near-surface hydrogeochemistry is the intertidal zone. Here, the very strong tidal hydraulic forcing is often thought to dominate water and solute transport. However, we demonstrated the importance of two additional subsurface drivers: groundwater flow and plant root water uptake. A high-resolution, coupled surface water-groundwater model of an intertidal salt marsh in San Francisco Bay, CA showed that these three drivers vary over different spatial scales: tidal flooding varies over 10's of meters; groundwater flow varies over meters, particularly within channel banks; and plant root water uptake varies in 3D at the sub-meter scale. Expanding on this third driver, we investigated whether the spatial variations in soil-water-plant hydraulic interactions that occur due to vegetation zonation also cause distinct geochemical zonation in salt marsh sediment pore waters. The existence of such geochemical zonation was verified and mapped by detailed field observations of the chemical composition of sediments, pore waters, surface waters, and vegetation. The field data and the coupled hydrologic model were then further analyzed to evaluate potential causal mechanisms for the geochemical zonation, including testing the hypothesis that the vegetation affects pore water geochemistry via a positive feedback beneficial to itself. If further supported by future studies, this geochemical feedback may complement known physical ecosystem engineering mechanisms to help stabilize and organize intertidal wetlands.

Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sobecky, Patricia A.

2015-04-06

In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Areamore » 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.« less

Population dynamics and antimicrobial susceptibility of Aeromonas spp. along a salinity gradient in an urban estuary in Northeastern Brazil.

PubMed

Silva, Camila Magalhães; Evangelista-Barreto, Norma Suely; Vieira, Regine Helena Silva Dos Fernandes; Mendonça, Kamila Vieira; Sousa, Oscarina Viana de

2014-12-15

The main objective of this study was to quantify population and identify culturable species of Aeromonas in sediment and surface water collected along a salinity gradient in an urban estuary in Northeastern Brazil. Thirty sediment samples and 30 water samples were collected from 3 sampling locations (A, B and C) between October 2007 and April 2008. The Aeromonas count was 10-7050CFU/mL (A), 25-38,500CFU/mL (B) and<10CFU/mL (C) for water samples, and ∼100-37,500CFU/g (A), 1200-43,500CFU/g (B) and<10CFU/g (C) for sediment samples. Five species (Aeromonas caviae, A. sobria, A. trota, A. salmonicida and A. allosaccharophila) were identified among 41 isolates. All strains were sensitive to chloramphenicol and ceftriaxone, whereas 33 (80, 4%) strains were resistant to at least 2 of the 9 antibiotics tested. Resistance to erythromycin was mostly plasmidial. In conclusion, due to pollution, the Cocó River is contaminated by pathogenic strains of Aeromonas spp. with a high incidence of antibacterial resistance, posing a serious risk to human health. Copyright © 2014 Elsevier Ltd. All rights reserved.

Use of borehole geophysical logs for improved site characterization at Naval Weapons Industrial Reserve Plant, Dallas, Texas

USGS Publications Warehouse

Anaya, Roberto; Braun, Christopher L.; Kuniansky, Eve L.

2000-01-01

A shallow alluvial aquifer at the Naval Weapons Industrial Reserve Plant near Dallas, Texas, has been contaminated by organic solvents used in the fabrication and assembly of aircraft and aircraft parts. Natural gamma-ray and electromagnetic-induction log data collected during 1997 from 162 wells were integrated with existing lithologic and cone-penetrometer test log data to improve characterization of the subsurface alluvium at the site. The alluvium, consisting of mostly fine-grained, low-permeability sediments, was classified into low, intermediate, and high clay-content sediments on the basis of the gamma-ray logs. Low clay-content sediments were interpreted as being relatively permeable, whereas high clay-content sediments were interpreted as being relatively impermeable. Gamma-ray logs, cone-penetrometer test logs, and electromagnetic-induction logs were used to develop a series of intersecting sections to delineate the spatial distribution of low, intermediate, and high clay-content sediments and to delineate zones of potentially contaminated sediments. The sections indicate three major sedimentary units in the shallow alluvial aquifer at NWIRP. The lower unit consists of relatively permeable, low clay-content sediments and is absent over the southeastern and northwestern part of the site. Permeable zones in the complex, discontinuous middle unit are present mostly in the western part of the site. In the eastern and southeastern part of the site, the upper unit has been eroded away and replaced by fill material. Zones of potentially contaminated sediments are generally within the uppermost clay layer or fill material. In addition, the zones tend to be local occurrences.

Physical, chemical, and mineralogical data from surficial deposits, groundwater levels, and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada

USGS Publications Warehouse

Goldstein, Harland L.; Breit, George N.; Yount, James C.; Reynolds, Richard L.; Reheis, Marith C.; Skipp, Gary L.; Fisher, Eric M.; Lamothe, Paul J.

2011-01-01

This report presents data and describes the methods used to determine the physical attributes, as well as the chemical and mineralogical composition of surficial deposits; groundwater levels; and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada. The results support studies that examine (1) the interaction between groundwater and the ground surface, and the transport of solutes through the unsaturated zone; (2) the potential for the accumulation of metals and metalloids in surface crusts; (3) emission of dust from metal-rich salt crust; and (4) the effects of metal-rich dusts on human and ecosystem health. The evaporation of shallow (<3 to 4 m) groundwater in saline, arid environments commonly results in the accumulation of salt in the subsurface and (or) the formation of salt crusts at the ground surface. Ground-surface characteristics such as hardness, electrical conductivity, and mineralogy depend on the types and forms of these salt crusts. In the study area, salt crusts range from hard and bedded to soft and loose (Reynolds and others, 2009). Depending on various factors such as the depth and composition of groundwater and sediment characteristics of the unsaturated zone, salt crusts may accumulate relatively high contents of trace elements. Soft, loose salt crusts are highly vulnerable to wind erosion and transport. These vulnerable crusts, which may contain high contents of potentially toxic trace elements, can travel as atmospheric dust and affect human and ecosystem health at local to regional scales.

The role of subsurface flow in hillslope and streambank erosion: A review of status and research needs

USDA-ARS?s Scientific Manuscript database

Sediment is the most common cause of stream impairment. Great progress has been made in understanding processes of soil erosion due to surface runoff and incorporating these in prediction technologies. However, in many landscapes the dominant source of sediment is derived from mass wasting of hillsl...

Effect of alternative surface inlet designs on sediment and phosphorus drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, T; Fredrickson, Jim K.; Balkwill, David L.

Several strains of Sphingomonas isolated from deep Atlantic coastal plain aquifers at the US Department of Energy Savannah River Site (SRS) near Aiken, SC were shown to degrade a variety of aromatic hydrocarbons in a liquid culture medium. Sphingomonas aromaticivorans strain B0695 was the most versatile of the five strains examined. This strain was able to degrade acenaphthene, anthracene, phenanthrene, 2,3-benzofluorene, 2-methyl naphthalene, 2,3-dimethylnaphthalene, and fluoranthene in the presence of 400 mg l(-1) Tween 80. Studies involving microcosms composed of aquifer sediments showed that S. aromaticivorans B0695 could degrade phenanthrene effectively in sterile sediment and could enhance the rate atmore » which this compound was degraded in nonsterile sediment. These findings indicate that it may be feasible to carry out (or, at least, to enhance) in situ bioremediation of phenanthrene-contaminated soils and subsurface environments with S. aromaticivorans B0695. In contrast, stra in B0695 was unable to degrade fluoranthene in microcosms containing aquifer sediments, even though it readily degraded this polynuclear aromatic hydrocarbon (PAH) in a defined liquid growth medium.« less

Single cell genomic study of Dehalococcoidites in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Spormann, A. M.

2013-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites Dhc were originally discovered as the key microorganisms mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene. Molecular and genomic studies on their key enzymes for energy conservation, reductive dehalogenases rdh, have provided evidence for ubiquitous horizontal gene transfer. A pioneering study by Futagami et al. discovered novel putative rdh phylotypes in sediments from the Pacific, revealing an unknown and surprising abundance of rdh genes in pristine habitats. The frequent detection of Dhc-related 16S rRNA genes from these environments implied the occurrence of dissimilatory dehalorespiration in marine subsurface sediments, however, pristine Dhc could never be linked to this activity. Despite being ubiquitous in those environments, metabolic life style or ecological function of Dhc in the absence of anthropogenic contaminants is still completely unknown. We therefore analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site by a single cell genomic (SGC) approach. We present for the first time data on three single Dhc cells, helping to elucidate their role in the poorly understood oligotrophic marine sub-surface environment.

Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments

PubMed Central

Lenstra, Wytze; Jong, Dirk; Meysman, Filip J. R.; Sapart, Célia J.; van der Veen, Carina; Röckmann, Thomas; Gonzalez, Santiago; Slomp, Caroline P.

2016-01-01

Globally, the methane (CH4) efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings, however, pore water CH4 is found throughout the sulfate-bearing zone, indicating an apparently inefficient oxidation barrier for CH4. Here we demonstrate that rapid sediment accumulation can explain this limited capacity for CH4 removal in coastal sediments. In a saline coastal reservoir (Lake Grevelingen, The Netherlands), we observed high diffusive CH4 effluxes from the sediment into the overlying water column (0.2–0.8 mol m-2 yr-1) during multiple years. Linear pore water CH4 profiles and the absence of an isotopic enrichment commonly associated with CH4 oxidation in a zone with high rates of sulfate reduction (50–170 nmol cm-3 d-1) both suggest that CH4 is bypassing the zone of sulfate reduction. We propose that the rapid sediment accumulation at this site (~ 13 cm yr-1) reduces the residence time of the CH4 oxidizing microorganisms in the sulfate/methane transition zone (< 5 years), thus making it difficult for these slow growing methanotrophic communities to build-up sufficient biomass to efficiently remove pore water CH4. In addition, our results indicate that the high input of organic matter (~ 91 mol C m-2 yr-1) allows for the co-occurrence of different dissimilatory respiration processes, such as (acetotrophic) methanogenesis and sulfate reduction in the surface sediments by providing abundant substrate. We conclude that anthropogenic eutrophication and rapid sediment accumulation likely increase the release of CH4 from coastal sediments. PMID:27560511

Sediment carbon fate in phreatic karst (Part 1): Conceptual model development

NASA Astrophysics Data System (ADS)

Husic, A.; Fox, J.; Agouridis, C.; Currens, J.; Ford, W.; Taylor, C.

2017-06-01

Recent research has paid increased attention to quantifying the fate of carbon pools within fluvial networks, but few, if any, studies consider the fate of sediment organic carbon in fluviokarst systems despite that karst landscapes cover 12% of the earth's land surface. The authors develop a conceptual model of sediment carbon fate in karst terrain with specific emphasis upon phreatic karst conduits, i.e., those located below the groundwater table that have the potential to trap surface-derived sediment and turnover carbon. To assist with their conceptual model development, the authors study a phreatic system and apply a mixture of methods traditional and novel to karst studies, including electrical resistivity imaging, well drilling, instantaneous velocimetry, dye tracing, stage recording, discrete and continuous sediment and water quality sampling, and elemental and stable carbon isotope fingerprinting. Results show that the sediment transport carrying capacity of the phreatic karst water is orders of magnitude less than surface streams during storm-activated periods promoting deposition of fine sediments in the phreatic karst. However, the sediment transport carrying capacity is sustained long after the hydrologic event has ended leading to sediment resuspension and prolonged transport. The surficial fine grained laminae occurs in the subsurface karst system; but unlike surface streams, the light-limited conditions of the subsurface karst promotes constant heterotrophy leading to carbon turnover. The coupling of the hydrological processes leads to a conceptual model that frames phreatic karst as a biologically active conveyor of sediment carbon that recharges degraded organic carbon back to surface streams. For example, fluvial sediment is estimated to lose 30% of its organic carbon by mass during a one year temporary residence within the phreatic karst. It is recommended that scientists consider karst pathways when attempting to estimate organic matter stocks and carbon transformation in fluvial networks.

Biotransformation at 10 C of di-n-butyl phthalate in subsurface microcosms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chauret, C.; Inniss, W.E.; Mayfield, C.I.

1996-09-01

Di-n-butyl phthalate (DBP) was found to be transformed by microorganisms under aerobic and anaerobic conditions at 10 C in microcosms simulating the Canadian Forces Base (CFB) Borden subsurface environment. Biotransformation of DBP was observed under aerobic, nitrate-reducing, Fe(III)-reducing, and sulfate-reducing conditions. The biotransformation of DBP in the microcosms was significantly decrease3d as the redox potential was lowered, especially under sulfate-reducing conditions. However, other factors such as nutrient depletion and buildup of toxic intermediates could have affected the biotransformation rates. The highest DBP biotransformation rate (0.57 {micro}g DBP{center_dot}g sediment{sup {minus}1}{center_dot}day{sup {minus}1}) was under sulfate-reducing conditions. Biotransformation of DBP at 10 Cmore » was significantly enhanced by the addition of 10 mM NaNO{sub 3} suggesting that both the addition of nitrate and high redox conditions favor its biotransformation in subsurface environments.« less

Effect of subsurface drainage on runoff and sediment yield from an agricultural watershed in western Oregon, U.S.A.

NASA Astrophysics Data System (ADS)

Istok, J. D.; Kling, G. F.

1983-09-01

Rainfall, watershed runoff and suspended-sediment concentrations for three small watersheds (0.46, 1.4 and 6.0 ha in size) were measured continuously for four winter rainfall seasons. The watersheds were fall-planted to winter wheat and were located on the hilly western margins of the Willamette Valley, Oregon. Following two rainfall seasons of data collection, a subsurface drainage system (consisting of a patterned arrangement of 10-cm plastic tubing at a depth of 1.0 m and a spacing of 12 m) was installed on the 1.4-ha watershed (watershed 2). Perched water tables were lowered and seepage was reduced on watershed 2 following the installation of the drainage system. The reductions were quantified with a water-table index (cumulative integrated excess). Watershed runoff and sediment yield from watershed 2 were decreased by ˜65 and ˜55%, respectively. These reductions were estimated from double mass curves and by statistical regression on a set of hydrograph variables. Maximum flow and average flow rates were decreased and the time from the beginning of a storm to the peak flow (lag time) increased. It is concluded that subsurface drainage can be an effective management practice for erosion control in western Oregon.

Where the oil from surface and subsurface plumes deposited during/after Deepwater Horizon oil spill?

NASA Astrophysics Data System (ADS)

Yan, B.

2016-02-01

The Deepwater Horizon (DwH) oil spill released an estimated 4.9 million barrels (about 200 million gallons) of crude oil into the Gulf of Mexico between April 20, 2010 and July 15, 2010. Though Valentine et al. has linked the elevated oil components in some sediments with the subsurface plume, the sites with fallout from the ocean surface plume has not been identified. This piece of information is critical not only for a comprehensive scientific understanding of the ecosystem response and fate of spill-related pollutants, but also for litigation purposes and future spill response and restoration planning. In this study we focus on testing the hypothesis that marine snow from the surface plume were deposited on the sea floor over a broad area. To do so, we use publicly available data generated as part of the ongoing Natural Resource Damage Assessment (NRDA) process to assess the spatial distribution of petroleum hydrocarbons in the water column and deep-ocean sediments of the Gulf of Mexico. Sensitive hydrocarbon markers are used to differentiate hydrocarbons from surface plume, deep subsurface plume, and in-situ burning. Preliminary results suggest the overlapping but different falling sites of these plumes and the sedimentation process was controlled by various biological, chemical, and physical factors.

Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments.

PubMed

Wang, Yanping; Wiatrowski, Heather A; John, Ria; Lin, Chu-Ching; Young, Lily Y; Kerkhof, Lee J; Yee, Nathan; Barkay, Tamar

2013-02-01

The contamination of groundwater with mercury (Hg) is an increasing problem worldwide. Yet, little is known about the interactions of Hg with microorganisms and their processes in subsurface environments. We tested the impact of Hg on denitrification in nitrate reducing enrichment cultures derived from subsurface sediments from the Oak Ridge Integrated Field Research Challenge site, where nitrate is a major contaminant and where bioremediation efforts are in progress. We observed an inverse relationship between Hg concentrations and onset and rates of denitrification in nitrate enrichment cultures containing between 53 and 1.1 μM of inorganic Hg; higher Hg concentrations increasingly extended the time to onset of denitrification and inhibited denitrification rates. Microbial community complexity, as indicated by terminal restriction fragment length polymorphism (tRFLP) analysis of the 16S rRNA genes, declined with increasing Hg concentrations; at the 312 nM Hg treatment, a single tRFLP peak was detected representing a culture of Bradyrhizobium sp. that possessed the merA gene indicating a potential for Hg reduction. A culture identified as Bradyrhizobium sp. strain FRC01 with an identical 16S rRNA sequence to that of the enriched peak in the tRFLP patterns, reduced Hg(II) to Hg(0) and carried merA whose amino acid sequence has 97 % identity to merA from the Proteobacteria and Firmicutes. This study demonstrates that in subsurface sediment incubations, Hg may inhibit denitrification and that inhibition may be alleviated when Hg resistant denitrifying Bradyrhizobium spp. detoxify Hg by its reduction to the volatile elemental form.

Millennial-Scale Variability in the Indian Monsoon and Links to Ocean Circulation

NASA Astrophysics Data System (ADS)

DeLong, K. A.; Came, R. E.; Johnson, J. E.; Giosan, L.

2014-12-01

Millennial-scale variability in the Indian monsoon was temporally linked to changes in global ocean circulation during the last glacial period, as evidenced by planktic-benthic foraminiferal stable isotope and trace element results from an intermediate depth sediment core from the northwestern Bay of Bengal. Paired planktic foraminiferal Mg/Ca and δ18Oc constrain sea surface temperatures and isolate millennial-scale variations in the δ18O of surface waters (δ18Osw), which resulted from changes in river runoff in the northwestern Bay. Concurrently with low δ18Osw events, benthic foraminiferal δ13C decreased, suggesting an increased influence of an aged water mass at this intermediate depth site during the low salinity events. Benthic foraminiferal Cd/Ca results support the identification of this water mass as aged Glacial Antarctic Intermediate Water (GAAIW). Lagged correlation analysis (r= 0.41) indicates that changes in subsurface properties led changes in surface properties by an average of 380 years. The implication is that Southern Hemisphere climate exerted a controlling influence on the Indian monsoon during the last glacial period.

Low-temperature, mineral-catalyzed air oxidation: a possible new pathway for PAH stabilization in sediments and soils.

PubMed

Ghislain, Thierry; Faure, Pierre; Biache, Coralie; Michels, Raymond

2010-11-15

Reactivity of polycyclic aromatic hydrocarbons (PAHs) in the subsurface is of importance to environmental assessment, as they constitute a highly toxic hazard. Understanding their reactivity in the long term in natural recovering systems is thus a key issue. This article describes an experimental investigation on the air oxidation of fluoranthene (a PAH abundant in natural systems polluted by industrial coal use) at 100°C on different mineral substrates commonly found in soils and sediments (quartz sand, limestone, and clay). Results demonstrate that fluoranthene is readily oxidized in the presence of limestone and clay, leading to the formation of high molecular weight compounds and a carbonaceous residue as end product especially for clay experiments. As demonstrated elsewhere, the experimental conditions used permitted the reproduction of the geochemical pathway of organic matter observed under natural conditions. It is therefore suggested that low-temperature, mineral-catalyzed air oxidation is a mechanism relevant to the stabilization of PAHs in sediments and soils.

Low pCO2 under sea-ice melt in the Canada Basin of the western Arctic Ocean

NASA Astrophysics Data System (ADS)

Kosugi, Naohiro; Sasano, Daisuke; Ishii, Masao; Nishino, Shigeto; Uchida, Hiroshi; Yoshikawa-Inoue, Hisayuki

2017-12-01

In September 2013, we observed an expanse of surface water with low CO2 partial pressure (pCO2sea) (< 200 µatm) in the Chukchi Sea of the western Arctic Ocean. The large undersaturation of CO2 in this region was the result of massive primary production after the sea-ice retreat in June and July. In the surface of the Canada Basin, salinity was low (< 27) and pCO2sea was closer to the air-sea CO2 equilibrium (˜ 360 µatm). From the relationships between salinity and total alkalinity, we confirmed that the low salinity in the Canada Basin was due to the larger fraction of meltwater input (˜ 0.16) rather than the riverine discharge (˜ 0.1). Such an increase in pCO2sea was not so clear in the coastal region near Point Barrow, where the fraction of riverine discharge was larger than that of sea-ice melt. We also identified low pCO2sea (< 250 µatm) in the depth of 30-50 m under the halocline of the Canada Basin. This subsurface low pCO2sea was attributed to the advection of Pacific-origin water, in which dissolved inorganic carbon is relatively low, through the Chukchi Sea where net primary production is high. Oxygen supersaturation (> 20 µmol kg-1) in the subsurface low pCO2sea layer in the Canada Basin indicated significant net primary production undersea and/or in preformed condition. If these low pCO2sea layers surface by wind mixing, they will act as additional CO2 sinks; however, this is unlikely because intensification of stratification by sea-ice melt inhibits mixing across the halocline.

What Controls Sediment Retention in an Emerging Delta?

NASA Astrophysics Data System (ADS)

Keogh, M.; Kolker, A.

2016-12-01

What controls sediment retention in an emerging delta? Here, we examine the effects of river discharge and flow velocity on sediment retention rate, using a developing crevasse splay in the Lower Mississippi Delta as a study location. With a controlled discharge that ranges from 28 to 280 m3/s, Davis Pond Freshwater Diversion connects the Mississippi River to the adjacent wetland, allowing river water, sediment, and nutrients to flow into the marsh. Although Davis Pond was primarily designed to regulate salinity within Barataria Basin rather than to build land, a new crevasse splay has recently emerged at the mouth of the diversion's outfall channel. Short (5 cm) sediment cores were collected at 22 locations around the Davis Pond receiving basin in spring 2015, fall 2015, and spring 2016. All cores were analyzed for sediment geotechnical parameters including organic content, bulk density, and grain size. Sediment input into the receiving basin was calculated using a ratings curve. Activity of the radioisotope beryllium-7 was used to calculate rates of sediment accumulation and retention. We find that while sediment input is greater during high flow, rate of retention is greater during low flow. This is likely due to the increase in flow velocity that accompanies high discharge, which retains sediment in suspension and leads to more throughput of material. Furthermore, the diversion operation regime of sustained low flow punctuated by short-duration high discharge events has increased soil bulk density, mineral sediment accumulation, and marsh platform elevation. River diversions such as Davis Pond mimic the land-building processes of natural crevasse splays and provide a promising method to restore deltaic wetlands worldwide.

Shallow geology, sea-floor texture, and physiographic zones of Vineyard and western Nantucket Sounds, Massachusetts

USGS Publications Warehouse

Baldwin, Wayne E.; Foster, David S.; Pendleton, Elizabeth A.; Barnhardt, Walter A.; Schwab, William C.; Andrews, Brian D.; Ackerman, Seth D.

2016-09-02

Geologic, sediment texture, and physiographic zone maps characterize the sea floor of Vineyard and western Nantucket Sounds, Massachusetts. These maps were derived from interpretations of seismic-reflection profiles, high-resolution bathymetry, acoustic-backscatter intensity, bottom photographs/video, and surficial sediment samples collected within the 494-square-kilometer study area. Interpretations of seismic stratigraphy and mapping of glacial and Holocene marine units provided a foundation on which the surficial maps were created. This mapping is a result of a collaborative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to characterize the surface and subsurface geologic framework offshore of Massachusetts.

Subsurface North Atlantic warming as a trigger of rapid cooling events: evidences from the Early Pleistocene (MIS 31-19)

NASA Astrophysics Data System (ADS)

Hernández-Almeida, I.; Sierro, F.-J.; Cacho, I.; Flores, J.-A.

2014-10-01

Subsurface water column dynamics in the subpolar North Atlantic were reconstructed in order to improve the understanding of the cause of abrupt IRD events during cold periods of the Early Pleistocene. We used Mg / Ca-based temperatures of deep-dwelling (Neogloboquadrina pachyderma sinistral) planktonic foraminifera and paired Mg / Ca-δ18O measurements to estimate the subsurface temperatures and δ18O of seawater at Site U1314. Carbon isotopes on benthic and planktonic foraminifera from the same site provide information about the ventilation and water column nutrient gradient. Mg / Ca-based temperatures and δ18O of seawater suggest increased temperatures and salinities during ice-rafting, likely due to enhanced northward subsurface transport of subtropical waters during periods of AMOC reduction. Planktonic carbon isotopes support this suggestion, showing coincident increased subsurface ventilation during deposition of ice-rafted detritus (IRD). Warm waters accumulated at subsurface would result in basal warming and break-up of ice-shelves, leading to massive iceberg discharges in the North Atlantic. Release of heat and salt stored at subsurface would help to restart the AMOC. This mechanism is in agreement with modelling and proxy studies that observe a subsurface warming in the North Atlantic in response to AMOC slowdown during the MIS3.

Briefing on geological sequestration (Tulsa)

EPA Science Inventory

Geological sequestration (GS) is generally recognized as the injection and long-term (e.g., hundreds to thousands of years) trapping of gaseous, liquid or supercritical carbon dioxide (CO2) in subsurface media – primarily saline formations, depleted or nearly depleted oil and gas...

Offsetting Water Requirements and Stress with Enhanced Water Recovery from CO 2 Storage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hunter, Kelsey Anne; Middleton, Richard

2016-08-03

These are the slides from a presentation at the Mickey Leland Energy Fellowship Forum. The following topics are discussed: motivation, Saline Aquifer Storage, Subsurface Flow, Baseline No Brine Production, Ongoing Work, and the accompanying data visualizations.

The effects of salinity on nitrification using halophilic nitrifiers in a Sequencing Batch Reactor treating hypersaline wastewater.

PubMed

Cui, You-Wei; Zhang, Hong-Yu; Ding, Jie-Ran; Peng, Yong-Zhen

2016-04-25

With annual increases in the generation and use of saline wastewater, the need to avoid environmental problems such as eutrophication is critical. A previous study identified ways to start up a halophilic sludge domesticated from estuarine sediments to remove nitrogen from wastewater with a salinity of 30 g/L. This investigation expands that work to explore the impact of salinity on nitrogen removal. This study demonstrated that the mixed halophilic consortia removed nitrogen from wastewater with a salinity of 30-85 g/L. A kinetic analysis showed that halophilic nitrifiers selected based on hypersalinity were characterized by low Ks, μmax and specific ammonium oxidization rates. This explains the decrease in ammonium removal efficiency in the high salinity operational phases. Salinity inhibited ammonia oxidizing bacteria (AOB) activity, as well as the number of dominant AOB, but did not significantly affect the AOB dominant species. Three most dominant AOB lineages in the halophilic sludge were Nitrosomonas marina, Nitrosomonas europaea, and Nitrosococcus mobilis. Nitrosomonas europaea and Nitrosococcus mobilis were mainly affected by salinity, while nitrite accumulation and ammonia loading played the key role in determining the abundance of Nitrosococcus mobilis and Nitrosococcus europaea. The study contributes insights about shifts in halophilic nitrifying bacterial populations.

The effects of salinity on nitrification using halophilic nitrifiers in a Sequencing Batch Reactor treating hypersaline wastewater

PubMed Central

Cui, You-Wei; Zhang, Hong-Yu; Ding, Jie-Ran; Peng, Yong-Zhen

2016-01-01

With annual increases in the generation and use of saline wastewater, the need to avoid environmental problems such as eutrophication is critical. A previous study identified ways to start up a halophilic sludge domesticated from estuarine sediments to remove nitrogen from wastewater with a salinity of 30 g/L. This investigation expands that work to explore the impact of salinity on nitrogen removal. This study demonstrated that the mixed halophilic consortia removed nitrogen from wastewater with a salinity of 30–85 g/L. A kinetic analysis showed that halophilic nitrifiers selected based on hypersalinity were characterized by low Ks, μmax and specific ammonium oxidization rates. This explains the decrease in ammonium removal efficiency in the high salinity operational phases. Salinity inhibited ammonia oxidizing bacteria (AOB) activity, as well as the number of dominant AOB, but did not significantly affect the AOB dominant species. Three most dominant AOB lineages in the halophilic sludge were Nitrosomonas marina, Nitrosomonas europaea, and Nitrosococcus mobilis. Nitrosomonas europaea and Nitrosococcus mobilis were mainly affected by salinity, while nitrite accumulation and ammonia loading played the key role in determining the abundance of Nitrosococcus mobilis and Nitrosococcus europaea. The study contributes insights about shifts in halophilic nitrifying bacterial populations. PMID:27109617

Effects of salinity and particle concentration on sediment hydrodynamics and critical bed-shear-stress for erosion of fine grained sediments used in wetland restoration projects

NASA Astrophysics Data System (ADS)

Ghose-Hajra, M.; McCorquodale, A.; Mattson, G.; Jerolleman, D.; Filostrat, J.

2015-03-01

Sea-level rise, the increasing number and intensity of storms, oil and groundwater extraction, and coastal land subsidence are putting people and property at risk along Louisiana's coast, with major implications for human safety and economic health of coastal areas. A major goal towards re-establishing a healthy and sustainable coastal ecosystem has been to rebuild Louisiana's disappearing wetlands with fine grained sediments that are dredged or diverted from nearby rivers, channels and lakes to build land in open water areas. A thorough geo-hydrodynamic characterization of the deposited sediments is important in the correct design and a more realistic outcome assessment of the long-term performance measures for ongoing coastal restoration projects. This paper evaluates the effects of salinity and solid particle concentration on the re-suspension characteristics of fine-grained dredged sediments obtained from multiple geographic locations along the Gulf coast. The critical bed-shear-stress for erosion has been evaluated as a function of sedimentation time. The sediment hydrodynamic properties obtained from the laboratory testing were used in a numerical coastal sediment distribution model to aid in evaluating sediment diversions from the Mississippi River into Breton Sound and Barataria Bay.

Field Evidence for Magnetite Formation by a Methanogenic Microbial Community

NASA Astrophysics Data System (ADS)

Rossbach, S.; Beaver, C. L.; Williams, A.; Atekwana, E. A.; Slater, L. D.; Ntarlagiannis, D.; Lund, A.

2015-12-01

The aged, subsurface petroleum spill in Bemidji, Minnesota, has been surveyed with magnetic susceptibility (MS) measurements. High MS values were found in the free-product phase around the fluctuating water table. Although we had hypothesized that high MS values are related to the occurrence of the mineral magnetite resulting from the activity of iron-reducing bacteria, our microbial analysis pointed to the presence of a methanogenic microbial community at the locations and depths of the highest MS values. Here, we report on a more detailed microbial analysis based on high-throughput sequencing of the 16S rRNA gene of sediment samples from four consecutive years. In addition, we provide geochemical data (FeII/FeIII concentrations) to refine our conceptual model of methanogenic hydrocarbon degradation at aged petroleum spills and demonstrate that the microbial induced changes of sediment properties can be monitored with MS. The methanogenic microbial community at the Bemidji site consisted mainly of the syntrophic, hydrocarbon-degrading Smithella and the hydrogenotrophic, methane-generating Methanoregula. There is growing evidence in the literature that not only Bacteria, but also some methanogenic Archaea are able to reduce iron. In fact, a recent study reported that the methanogen Methanosarcina thermophila produced magnetite during the reduction of ferrihydrite in a laboratory experiment when hydrogen was present. Therefore, our finding of high MS values and the presence of magnetite in the methanogenic zone of an aged, subsurface petroleum spill could very well be the first field evidence for magnetite formation during methanogenic hydrocarbon degradation.

Geoelectrical monitoring of simulated subsurface leakage to support high-hazard nuclear decommissioning at the Sellafield Site, UK.

PubMed

Kuras, Oliver; Wilkinson, Paul B; Meldrum, Philip I; Oxby, Lucy S; Uhlemann, Sebastian; Chambers, Jonathan E; Binley, Andrew; Graham, James; Smith, Nicholas T; Atherton, Nick

2016-10-01

A full-scale field experiment applying 4D (3D time-lapse) cross-borehole Electrical Resistivity Tomography (ERT) to the monitoring of simulated subsurface leakage was undertaken at a legacy nuclear waste silo at the Sellafield Site, UK. The experiment constituted the first application of geoelectrical monitoring in support of decommissioning work at a UK nuclear licensed site. Images of resistivity changes occurring since a baseline date prior to the simulated leaks revealed likely preferential pathways of silo liquor simulant flow in the vadose zone and upper groundwater system. Geophysical evidence was found to be compatible with historic contamination detected in permeable facies in sediment cores retrieved from the ERT boreholes. Results indicate that laterally discontinuous till units forming localized hydraulic barriers substantially affect flow patterns and contaminant transport in the shallow subsurface at Sellafield. We conclude that only geophysical imaging of the kind presented here has the potential to provide the detailed spatial and temporal information at the (sub-)meter scale needed to reduce the uncertainty in models of subsurface processes at nuclear sites. Copyright © 2016 British Geological Survey, NERC. Published by Elsevier B.V. All rights reserved.