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Sample records for histology-equivalent sectioning laser-scanning

  1. Multicolor immunophenotyping of tissue sections by laser scanning cytometry (LSC)

    NASA Astrophysics Data System (ADS)

    Tarnok, Attila; Gerstner, Andreas O.; Lenz, Dominik; Osmancik, Pavel; Schneider, Peter; Trumpfheller, Christine; Racz, Pal; Tenner-Racz, Klara

    2002-05-01

    In lymphatic organs the quantitative analysis of the spatial distribution of leukocytes would give relevant information about alterations during diseases (leukemia, HIV, AIDS) and their therapeutic regimen. Analysis of them in solid tissues is difficult to perform but would yield important data in a variety of clinical and experimental settings. We have developed an automated analysis method for LSC suitable for archived or fresh biopsy material of human lymph nodes and tonsils. Sections are stained with PI for DNA and up to three antigens using direct or indirect immunofluorescence staining. Measurement is triggered on DNA-fluorescence (Argon Laser). Due to the heterogeneity in cell density measurements are repeatedly performed at different threshold levels (low threshold: regions of low cellular density, germinal centers; high threshold: dense regions, mantle zone). Data are acquired by single- (Ar) or dual-laser excitation (Ar-HeNe) in order to determine data from single- (FITC), up to triple-staining (FITC/PE-Cy5/APC). Percentage and cellular density of cell-subsets is quantified in different structural regions of the specimen. Comparison with manual analysis of identical specimens showed very good correlation. With LSC a semi-automated operator-independent and immunophenotyping of lymphatic tissues with simultaneously up to four antibodies is possible. This technique should yield new insight into processes during diseases and should help to quantify the success of therapeutic interventions.

  2. Automatic Extraction of Tunnel Lining Cross-Sections from Terrestrial Laser Scanning Point Clouds

    PubMed Central

    Cheng, Yun-Jian; Qiu, Wenge; Lei, Jin

    2016-01-01

    Tunnel lining (bare-lining) cross-sections play an important role in analyzing deformations of tunnel linings. The goal of this paper is to develop an automatic method for extracting bare-lining cross-sections from terrestrial laser scanning (TLS) point clouds. First, the combination of a 2D projection strategy and angle criterion is used for tunnel boundary point detection, from which we estimate the two boundary lines in the X-Y plane. The initial direction of the cross-sectional plane is defined to be orthogonal to one of the two boundary lines. In order to compute the final cross-sectional plane, the direction is adjusted twice with the total least squares method and Rodrigues’ rotation formula, respectively. The projection of nearby points is made onto the adjusted plane to generate tunnel cross-sections. Finally, we present a filtering algorithm (similar to the idea of the morphological erosion) to remove the non-lining points in the cross-section. The proposed method was implemented on railway tunnel data collected in Sichuan, China. Compared with an existing method of cross-sectional extraction, the proposed method can offer high accuracy and more reliable cross-sectional modeling. We also evaluated Type I and Type II errors of the proposed filter, at the same time, which gave suggestions on the parameter selection of the filter. PMID:27782063

  3. Automatic Extraction of Tunnel Lining Cross-Sections from Terrestrial Laser Scanning Point Clouds.

    PubMed

    Cheng, Yun-Jian; Qiu, Wenge; Lei, Jin

    2016-10-06

    Tunnel lining (bare-lining) cross-sections play an important role in analyzing deformations of tunnel linings. The goal of this paper is to develop an automatic method for extracting bare-lining cross-sections from terrestrial laser scanning (TLS) point clouds. First, the combination of a 2D projection strategy and angle criterion is used for tunnel boundary point detection, from which we estimate the two boundary lines in the X-Y plane. The initial direction of the cross-sectional plane is defined to be orthogonal to one of the two boundary lines. In order to compute the final cross-sectional plane, the direction is adjusted twice with the total least squares method and Rodrigues' rotation formula, respectively. The projection of nearby points is made onto the adjusted plane to generate tunnel cross-sections. Finally, we present a filtering algorithm (similar to the idea of the morphological erosion) to remove the non-lining points in the cross-section. The proposed method was implemented on railway tunnel data collected in Sichuan, China. Compared with an existing method of cross-sectional extraction, the proposed method can offer high accuracy and more reliable cross-sectional modeling. We also evaluated Type I and Type II errors of the proposed filter, at the same time, which gave suggestions on the parameter selection of the filter.

  4. Laser scanning confocal microscopy: history, applications, and related optical sectioning techniques.

    PubMed

    Paddock, Stephen W; Eliceiri, Kevin W

    2014-01-01

    Confocal microscopy is an established light microscopical technique for imaging fluorescently labeled specimens with significant three-dimensional structure. Applications of confocal microscopy in the biomedical sciences include the imaging of the spatial distribution of macromolecules in either fixed or living cells, the automated collection of 3D data, the imaging of multiple labeled specimens and the measurement of physiological events in living cells. The laser scanning confocal microscope continues to be chosen for most routine work although a number of instruments have been developed for more specific applications. Significant improvements have been made to all areas of the confocal approach, not only to the instruments themselves, but also to the protocols of specimen preparation, to the analysis, the display, the reproduction, sharing and management of confocal images using bioinformatics techniques.

  5. 3D imaging of cement-based materials at submicron resolution by combining laser scanning confocal microscopy with serial sectioning.

    PubMed

    Yio, M H N; Mac, M J; Wong, H S; Buenfeld, N R

    2015-05-01

    In this paper, we present a new method to reconstruct large volumes of nontransparent porous materials at submicron resolution. The proposed method combines fluorescence laser scanning confocal microscopy with serial sectioning to produce a series of overlapping confocal z-stacks, which are then aligned and stitched based on phase correlation. The method can be extended in the XY plane to further increase the overall image volume. Resolution of the reconstructed image volume does not degrade with increase in sample size. We have used the method to image cementitious materials, hardened cement paste and concrete and the results obtained show that the method is reliable. Possible applications of the method such as three-dimensional characterization of the pores and microcracks in hardened concrete, three-dimensional particle shape characterization of cementitious materials and three-dimensional characterization of other porous materials such as rocks and bioceramics are discussed.

  6. In vivo imaging flow cytometry based on laser scanning two-photon microscopy at kHz cross-sectional frame rate

    NASA Astrophysics Data System (ADS)

    Kong, Lingjie; Tang, Jianyong; Cui, Meng

    2016-03-01

    In vivo flow cytometry has found numerous applications in biology and pharmacology. However, conventional cytometry does not provide the detailed morphological information that is needed to fully determine the phenotype of individual circulating cells. Imaging cytometry, capable of visualizing the morphology and dynamics of the circulating cells at high spatiotemporal resolution, is highly desired. Current wide-field based image cytometers are limited in the imaging depth and provide only two-dimensional resolution. For deep tissue imaging, laser scanning two-photon fluorescence microscopy (TPM) is widely adopted. However, for applications in flow cytometry, the axial scanning speed of current TPMs is inadequate to provide high-speed cross-sectional imaging of vasculature. We have integrated an optical phase-locked ultrasound lens into a standard TPM and achieved microsecond-scale axial scanning. With a galvo scanner for transverse scanning, we achieved kHz cross-sectional frame rate. Here we report its applications for in vivo deformability cytometry and in vivo imaging flow cytometry, and demonstrate the capability of imaging dynamical morphologies of flowing cells, distinguishing cells and cellular clusters, and simultaneously quantifying different cell populations based on their fluorescent labels.

  7. Underwater laser scanning system

    NASA Astrophysics Data System (ADS)

    Austin, Roswell W.; Duntley, Seibert Q.; Ensminger, Richard L.; Petzold, Theodore J.; Smith, Raymond C.

    1991-12-01

    A system is described that produces high quality images through turbid waters by means of time encoded reflected light transmitted by scattering. The system consists of a compact battery operated laser scanning unit that scans the underwater scene with the laser beam in a manner similar to a television raster. Light reflected from any object in the scene varies in accordance with the reflectance of the minute spot being illuminated. This time varying intensity (TVI) signal is transmitted through the water to a remote receiver by both scattered and unscattered light where the received signal may be stored and/or displayed. The underwater laser scanning unit can be moved freely about the field of interest by scuba diver or ROV, unencumbered by entangling umbilicals, and can send real-time images over distances of 15 to 20 attenuation lengths to observers in a shirt-sleeve environment for critical viewing on an image display monitor. This previously undescribed system was developed in the early 1970s for proof of concept tests and used technology that is now 18 or more years old. The physical principles and the experimental hardware are described and examples are given of images providing exquisite detail that were made in an experimental tank together with some images obtained in ocean trials.

  8. Digital laser scanning fundus camera.

    PubMed

    Plesch, A; Klingbeil, U; Bille, J

    1987-04-15

    Imaging and documentation of the human retina for clinical diagnostics are conventionally achieved by classical optical methods. We designed a digital laser scanning fundus camera. The optoelectronical instrument is based on scanning laser illumination of the retina and a modified video imaging procedure. It is coupled to a digital image buffer and a microcomputer for image storage and processing. Aside from its high sensitivity the LSF incorporates new ophthalmic imaging methods like polarization differential contrast. We give design considerations as well as a description of the instrument and its performance.

  9. Differential Multiphoton Laser Scanning Microscopy

    SciTech Connect

    Field, Jeffrey J.; Sheetz, Kraig E.; Chandler, Eric V.; Hoover, Erich E.; Young, Michael D.; Ding, Shi-you; Sylvester, Anne W.; Kleinfeld, David; Squier, Jeff A.

    2012-01-01

    Multifocal multiphoton laser scanning microscopy (mfMPLSM) in the biological and medical sciences has the potential to become a ubiquitous tool for obtaining high-resolution images at video rates. While current implementations of mfMPLSM achieve very high frame rates, they are limited in their applicability to essentially those biological samples that exhibit little or no scattering. In this paper, we report on a method for mfMPLSM in which whole-field detection with a single detector, rather than detection with a matrix of detectors, such as a charge-coupled device (CCD) camera, is implemented. This advance makes mfMPLSM fully compatible for use in imaging through scattering media. Further, we demonstrate that this method makes it possible to simultaneously obtain multiple images and view differences in excitation parameters in a single scan of the specimen.

  10. A New Multichannel Spectral Imaging Laser Scanning Confocal Microscope

    PubMed Central

    Zhang, Yunhai; Hu, Bian; Dai, Yakang; Yang, Haomin; Huang, Wei; Xue, Xiaojun; Li, Fazhi; Zhang, Xin; Jiang, Chenyu; Gao, Fei; Chang, Jian

    2013-01-01

    We have developed a new multichannel spectral imaging laser scanning confocal microscope for effective detection of multiple fluorescent labeling in the research of biological tissues. In this paper, the design and key technologies of the system are introduced. Representative results on confocal imaging, 3-dimensional sectioning imaging, and spectral imaging are demonstrated. The results indicated that the system is applicable to multiple fluorescent labeling in biological experiments. PMID:23585775

  11. Multiplatform Mobile Laser Scanning: Usability and Performance

    PubMed Central

    Kukko, Antero; Kaartinen, Harri; Hyyppä, Juha; Chen, Yuwei

    2012-01-01

    Mobile laser scanning is an emerging technology capable of capturing three-dimensional data from surrounding objects. With state-of-the-art sensors, the achieved point clouds capture object details with good accuracy and precision. Many of the applications involve civil engineering in urban areas, as well as traffic and other urban planning, all of which serve to make 3D city modeling probably the fastest growing market segment in this field. This article outlines multiplatform mobile laser scanning solutions such as vehicle- and trolley-operated urban area data acquisition, and boat-mounted equipment for fluvial environments. Moreover, we introduce a novel backpack version of mobile laser scanning equipment for surveying applications in the field of natural sciences where the requirements include precision and mobility in variable terrain conditions. In addition to presenting a technical description of the systems, we discuss the performance of the solutions in the light of various applications in the fields of urban mapping and modeling, fluvial geomorphology, snow-cover characterization, precision agriculture, and in monitoring the effects of climate change on permafrost landforms. The data performance of the mobile laser scanning approach is described by the results of an evaluation of the ROAMER on a permanent MLS test field. Furthermore, an in situ accuracy assessment using a field of spherical 3D targets for the newly-introduced Akhka backpack system is conducted and reported on.

  12. The design of laser scanning galvanometer system

    NASA Astrophysics Data System (ADS)

    Sun, Xiaoling; Zhou, Bin; Xie, Weihao; Zhang, Yuangeng

    2015-02-01

    In this paper, we designed the laser scanning galvanometer system according to our requirements. Based on scanning range of our laser scanning galvanometer system, the design parameters of this system were optimized. During this work, we focused on the design of the f-θ field lens. An optical system of patent lens in the optical manual book, which had three glasses structure, was used in our designs. Combining the aberration theory, the aberration corrections and image quality evaluations were finished using Code V optical design software. An optimum f-θ field lens was designed, which had focal length of 434 mm, pupil diameter of 30 mm, scanning range of 160 mm × 160 mm, and half field angle of 18°×18°. At the last, we studied the influences of temperature changes on our system.

  13. Terrestrial laser scanning in forest inventories

    NASA Astrophysics Data System (ADS)

    Liang, Xinlian; Kankare, Ville; Hyyppä, Juha; Wang, Yunsheng; Kukko, Antero; Haggrén, Henrik; Yu, Xiaowei; Kaartinen, Harri; Jaakkola, Anttoni; Guan, Fengying; Holopainen, Markus; Vastaranta, Mikko

    2016-05-01

    Decision making on forest resources relies on the precise information that is collected using inventory. There are many different kinds of forest inventory techniques that can be applied depending on the goal, scale, resources and the required accuracy. Most of the forest inventories are based on field sample. Therefore, the accuracy of the forest inventories depends on the quality and quantity of the field sample. Conventionally, field sample has been measured using simple tools. When map is required, remote sensing materials are needed. Terrestrial laser scanning (TLS) provides a measurement technique that can acquire millimeter-level of detail from the surrounding area, which allows rapid, automatic and periodical estimates of many important forest inventory attributes. It is expected that TLS will be operationally used in forest inventories as soon as the appropriate software becomes available, best practices become known and general knowledge of these findings becomes more wide spread. Meanwhile, mobile laser scanning, personal laser scanning, and image-based point clouds became capable of capturing similar terrestrial point cloud data as TLS. This paper reviews the advances of applying TLS in forest inventories, discusses its properties with reference to other related techniques and discusses the future prospects of this technique.

  14. Photodynamic therapy with laser scanning mode of tumor irradiation

    NASA Astrophysics Data System (ADS)

    Chepurna, Oksana; Shton, Irina; Kholin, Vladimir; Voytsehovich, Valerii; Popov, Viacheslav; Pavlov, Sergii; Gamaleia, Nikolai; Wójcik, Waldemar; Zhassandykyzy, Maral

    2015-12-01

    In this study we propose a new version of photodynamic therapy performed by laser scanning. The method consists in tumor treatment by a light beam of a small cross section which incrementally moves through the chosen area with a defined delay at each point and repetitively re-scans a zone starting from the initial position. Experimental evaluation of the method in vitro on murine tumor model showed that despite the dose, applied by scanning irradiation mode, was 400 times lower, the tumor inhibition rate conceded to attained with continuous irradiation mode by only 20%.

  15. [Application of confocal laser scanning microscope in forensic pathology].

    PubMed

    Zhuo, Luo; Hu, Le-Sheng; Zhou, Lan; Zheng, Na; Liang, Man; Yang, Fan; Liu, Liang

    2009-12-01

    Confocal laser scanning microscopy(CLSM) is a new technique for microscopic imaging, which can collect the transverse section image of the samples and produce three-dimensional reconstruction and present higher spatial resolution than the conventional light microscope. As a precision instrument for the microscopic image, it plays an important role in forensic pathology. The article reviews the recent research achievements from sudden cardiac death, bullet wound and nervous system damage, etc, and explores the potential applications of the forensic pathology research and forensic practice.

  16. Colonization of potato rhizosphere by GFP-tagged Bacillus subtilis MB73/2, Pseudomonas sp. P482 and Ochrobactrum sp. A44 shown on large sections of roots using enrichment sample preparation and confocal laser scanning microscopy.

    PubMed

    Krzyzanowska, Dorota; Obuchowski, Michal; Bikowski, Mariusz; Rychlowski, Michal; Jafra, Sylwia

    2012-12-18

    The ability to colonize the host plants' rhizospheres is a crucial feature to study in the case of Plant Growth Promoting Rhizobacteria (PGPRs) with potential agricultural applications. In this work, we have created GFP-tagged derivatives of three candidate PGPRs: Bacillus subtilis MB73/2, Pseudomonas sp. P482 and Ochrobactrum sp. A44. The presence of these strains in the rhizosphere of soil-grown potato (Solanum tuberosum L.) was detected with a classical fluorescence microscope and a confocal laser scanning microscope (CLSM). In this work, we have used a broad-field-of-view CLMS device, dedicated to in vivo analysis of macroscopic objects, equipped with an automated optical zoom system and tunable excitation and detection spectra. We show that features of this type of CLSM microscopes make them particularly well suited to study root colonization by microorganisms. To facilitate the detection of small and scattered bacterial populations, we have developed a fast and user-friendly enrichment method for root sample preparation. The described method, thanks to the in situ formation of mini-colonies, enables visualization of bacterial colonization sites on large root fragments. This approach can be easily modified to study colonization patterns of other fluorescently tagged strains. Additionally, dilution plating of the root extracts was performed to estimate the cell number of MB73/2, P482 and A44 in the rhizosphere of the inoculated plants.

  17. Colonization of Potato Rhizosphere by GFP-Tagged Bacillus subtilis MB73/2, Pseudomonas sp. P482 and Ochrobactrum sp. A44 Shown on Large Sections of Roots Using Enrichment Sample Preparation and Confocal Laser Scanning Microscopy

    PubMed Central

    Krzyzanowska, Dorota; Obuchowski, Michal; Bikowski, Mariusz; Rychlowski, Michal; Jafra, Sylwia

    2012-01-01

    The ability to colonize the host plants’ rhizospheres is a crucial feature to study in the case of Plant Growth Promoting Rhizobacteria (PGPRs) with potential agricultural applications. In this work, we have created GFP-tagged derivatives of three candidate PGPRs: Bacillus subtilis MB73/2, Pseudomonas sp. P482 and Ochrobactrum sp. A44. The presence of these strains in the rhizosphere of soil-grown potato (Solanum tuberosum L.) was detected with a classical fluorescence microscope and a confocal laser scanning microscope (CLSM). In this work, we have used a broad-field-of-view CLMS device, dedicated to in vivo analysis of macroscopic objects, equipped with an automated optical zoom system and tunable excitation and detection spectra. We show that features of this type of CLSM microscopes make them particularly well suited to study root colonization by microorganisms. To facilitate the detection of small and scattered bacterial populations, we have developed a fast and user-friendly enrichment method for root sample preparation. The described method, thanks to the in situ formation of mini-colonies, enables visualization of bacterial colonization sites on large root fragments. This approach can be easily modified to study colonization patterns of other fluorescently tagged strains. Additionally, dilution plating of the root extracts was performed to estimate the cell number of MB73/2, P482 and A44 in the rhizosphere of the inoculated plants. PMID:23250280

  18. Two-Photon Laser Scanning Microscopy

    NASA Astrophysics Data System (ADS)

    Nimmerjahn, A.; Theer, P.; Helmchen, F.

    Since its inception more than 15 years ago, two-photon laser scanning microscopy (2PLSM) has found widespread use in biological and medical research. Two-photon microscopy is based on simultaneous absorption of two photons by fluorophores and subsequent fluorescence emission, a process which under normal illumination conditions is highly improbable. Theoretically described around 1930 by Maria Göppert-Mayer [1], the first experimental demonstration of two-photon excitation had to await the invention of the laser, which produced sufficiently high light intensities to observe two-photon absorption events [2]. Only after the development of ultrafast lasers providing subpicosecond light pulses with high peak power intensities, however, two-photon-excited fluorescence became practical in a laser-scanning microscope [3]. Since then 2PLSM has developed into the method of choice for high-resolution imaging in living animals (reviewed in [4,5]). One of the main reasons is the low sensitivity of 2PLSM to light scattering, which enables imaging relatively deep inside biological tissue and direct observation of the dynamic behavior of cells in their native environment. In this chapter, we introduce the physical principles governing 2PLSM and briefly describe the key instrument components. We give an overview of fluorescence labeling techniques and how they are combined with 2PLSM for functional imaging and photomanipulation in living tissue. Finally, we discuss limitations and provide some future perspectives.

  19. Mobile Laser Scanning for Indoor Modelling

    NASA Astrophysics Data System (ADS)

    Thomson, C.; Apostolopoulos, G.; Backes, D.; Boehm, J.

    2013-10-01

    The process of capturing and modelling buildings has gained increased focus in recent years with the rise of Building Information Modelling (BIM). At the heart of BIM is a process change for the construction and facilities management industries whereby a BIM aids more collaborative working through better information exchange, and as a part of the process Geomatic/Land Surveyors are not immune from the changes. Terrestrial laser scanning has been proscribed as the preferred method for rapidly capturing buildings for BIM geometry. This is a process change from a traditional measured building survey just with a total station and is aided by the increasing acceptance of point cloud data being integrated with parametric building models in BIM tools such as Autodesk Revit or Bentley Architecture. Pilot projects carried out previously by the authors to investigate the geometry capture and modelling of BIM confirmed the view of others that the process of data capture with static laser scan setups is slow and very involved requiring at least two people for efficiency. Indoor Mobile Mapping Systems (IMMS) present a possible solution to these issues especially in time saved. Therefore this paper investigates their application as a capture device for BIM geometry creation over traditional static methods through a fit-for-purpose test.

  20. Two-Photon Laser Scanning Microscopy

    NASA Astrophysics Data System (ADS)

    Nimmerjahn, A.; Theer, P.; Helmchen, F.

    Since its inception more than 15 years ago, two-photon laser scanning microscopy (2PLSM) has found widespread use in biological and medical research. Two-photon microscopy is based on simultaneous absorption of two photons by fluorophores and subsequent fluorescence emission, a process which under normal illumination conditions is highly improbable. Theoretically described around 1930 by Maria Göppert-Mayer [1], the first experimental demonstration of two-photon excitation had to await the invention of the laser, which produced sufficiently high light intensities to observe two-photon absorption events [2]. Only after the development of ultrafast lasers providing subpicosecond light pulses with high peak power intensities, however, two-photon-excited fluorescence became practical in a laser-scanning microscope [3]. Since then 2PLSM has developed into the method of choice for high-resolution imaging in living animals (reviewed in [4,5]). One of the main reasons is the low sensitivity of 2PLSM to light scattering, which enables imaging relatively deep inside biological tissue and direct observation of the dynamic behavior of cells in their native environment. In this chapter, we introduce the physical principles governing 2PLSM and briefly describe the key instrument components. We give an overview of fluorescence labeling techniques and how they are combined with 2PLSM for functional imaging and photomanipulation in living tissue. Finally, we discuss limitations and provide some future perspectives.

  1. Extraction of power lines from mobile laser scanning data

    NASA Astrophysics Data System (ADS)

    Xiang, Qing; Li, Jonathan; Wen, Chenglu; Huang, Pengdi

    2016-03-01

    Modern urban life is becoming increasingly more dependent on reliable electric power supply. Since power outages cause substantial financial losses to producers, distributors and consumers of electric power, it is in the common interest to minimize failures of power lines. In order to detect defects as early as possible and to plan efficiently the maintenance activities, distribution networks are regularly inspected. Carrying out foot patrols or climbing the structures to visually inspect transmission lines and aerial surveys (e.g., digital imaging or most recent airborne laser scanning (ALS) are the two most commonly used methods of power line inspection. Although much faster in comparison to the foot patrol inspection, aerial inspection is more expensive and usually less accurate, in complex urban areas particularly. This paper presents a scientific work that is done in the use of mobile laser scanning (MLS) point clouds for automated extraction of power lines. In the proposed method, 2D power lines are extracted using Hough transform in the projected XOY plane and the 3D power line points are visualized after the point searching. Filtering based on an elevation threshold is applied, which is combined with the vehicle's trajectory in the horizontal section.

  2. Three-Dimensional Laser Scanning for Geometry Documentation and Construction Management of Highway Tunnels during Excavation

    PubMed Central

    Gikas, Vassilis

    2012-01-01

    Driven by progress in sensor technology, computer software and data processing capabilities, terrestrial laser scanning has recently proved a revolutionary technique for high accuracy, 3D mapping and documentation of physical scenarios and man-made structures. Particularly, this is of great importance in the underground space and tunnel construction environment as surveying engineering operations have a great impact on both technical and economic aspects of a project. This paper discusses the use and explores the potential of laser scanning technology to accurately track excavation and construction activities of highway tunnels. It provides a detailed overview of the static laser scanning method, its principles of operation and applications for tunnel construction operations. Also, it discusses the planning, execution, data processing and analysis phases of laser scanning activities, with emphasis given on geo-referencing, mesh model generation and cross-section extraction. Specific case studies are considered based on two construction sites in Greece. Particularly, the potential of the method is examined for checking the tunnel profile, producing volume computations and validating the smoothness/thickness of shotcrete layers at an excavation stage and during the completion of excavation support and primary lining. An additional example of the use of the method in the geometric documentation of the concrete lining formwork is examined and comparisons against dimensional tolerances are examined. Experimental comparisons and analyses of the laser scanning method against conventional surveying techniques are also considered. PMID:23112655

  3. Three-dimensional laser scanning for geometry documentation and construction management of highway tunnels during excavation.

    PubMed

    Gikas, Vassilis

    2012-01-01

    Driven by progress in sensor technology, computer software and data processing capabilities, terrestrial laser scanning has recently proved a revolutionary technique for high accuracy, 3D mapping and documentation of physical scenarios and man-made structures. Particularly, this is of great importance in the underground space and tunnel construction environment as surveying engineering operations have a great impact on both technical and economic aspects of a project. This paper discusses the use and explores the potential of laser scanning technology to accurately track excavation and construction activities of highway tunnels. It provides a detailed overview of the static laser scanning method, its principles of operation and applications for tunnel construction operations. Also, it discusses the planning, execution, data processing and analysis phases of laser scanning activities, with emphasis given on geo-referencing, mesh model generation and cross-section extraction. Specific case studies are considered based on two construction sites in Greece. Particularly, the potential of the method is examined for checking the tunnel profile, producing volume computations and validating the smoothness/thickness of shotcrete layers at an excavation stage and during the completion of excavation support and primary lining. An additional example of the use of the method in the geometric documentation of the concrete lining formwork is examined and comparisons against dimensional tolerances are examined. Experimental comparisons and analyses of the laser scanning method against conventional surveying techniques are also considered.

  4. Terrestrial Laser Scanning for Vegetation Sampling

    PubMed Central

    Richardson, Jeffrey J; Moskal, L. Monika; Bakker, Jonathan D.

    2014-01-01

    We developed new vegetation indices utilizing terrestrial laser scanning (TLS) to quantify the three-dimensional spatial configuration of plant communities. These indices leverage the novelty of TLS data and rely on the spatially biased arrangement of a TLS point cloud. We calculated these indices from TLS data acquired within an existing long term manipulation of forest structure in Central Oregon, USA, and used these data to test for differences in vegetation structure. Results provided quantitative evidence of a significant difference in vegetation density due to thinning and burning, and a marginally significant difference in vegetation patchiness due to grazing. A comparison to traditional field sampling highlighted the novelty of the TLS based method. By creating a linkage between traditional field sampling and landscape ecology, these indices enable field investigations of fine-scale spatial patterns. Applications include experimental assessment, long-term monitoring, and habitat characterization. PMID:25353981

  5. Slate characterization using 3D laser scanning

    NASA Astrophysics Data System (ADS)

    López, M.; Taboada, J.; Martínez, J.; Matías, J. M.; Vilán, J. A.

    2012-12-01

    Quality control is a necessary component of the slate slab manufacturing process so as to evaluate defects as defined by the current standard for slate. Quality control has traditionally been performed manually by an expert in the field, with the consequent human subjectivity. We studied the feasibility of using a 3D laser scanner to measure slate slabs and analyze possible defects that would lead to the rejection of slabs for particular industrial processes. The application requires slate characterization to be performed in real time and thereby requires a short computation time. We describe an optimized calibration method based on Tsai's approach that reduces calculation complexity and cost in this key 3D laser scanning stage. Configured and implemented for slate slab characterization, the system produces the required information in real time during the production process.

  6. Confocal laser scanning microscopy of apoptosis in organogenesis-stage mouse embryos

    EPA Science Inventory

    Confocal laser scanning microscopy combined with a vital stain has been used to study apoptosis in organogenesis-stage mouse embryos. In order to achieve optical sectioning through embryos, it was necessary to use low power objectives and to prepare the sample appropriately. Mous...

  7. Confocal laser scanning microscopy of apoptosis in organogenesis-stage mouse embryos

    EPA Science Inventory

    Confocal laser scanning microscopy combined with a vital stain has been used to study apoptosis in organogenesis-stage mouse embryos. In order to achieve optical sectioning through embryos, it was necessary to use low power objectives and to prepare the sample appropriately. Mous...

  8. Automatic change detection using mobile laser scanning

    NASA Astrophysics Data System (ADS)

    Hebel, M.; Hammer, M.; Gordon, M.; Arens, M.

    2014-10-01

    Automatic change detection in 3D environments requires the comparison of multi-temporal data. By comparing current data with past data of the same area, changes can be automatically detected and identified. Volumetric changes in the scene hint at suspicious activities like the movement of military vehicles, the application of camouflage nets, or the placement of IEDs, etc. In contrast to broad research activities in remote sensing with optical cameras, this paper addresses the topic using 3D data acquired by mobile laser scanning (MLS). We present a framework for immediate comparison of current MLS data to given 3D reference data. Our method extends the concept of occupancy grids known from robot mapping, which incorporates the sensor positions in the processing of the 3D point clouds. This allows extracting the information that is included in the data acquisition geometry. For each single range measurement, it becomes apparent that an object reflects laser pulses in the measured range distance, i.e., space is occupied at that 3D position. In addition, it is obvious that space is empty along the line of sight between sensor and the reflecting object. Everywhere else, the occupancy of space remains unknown. This approach handles occlusions and changes implicitly, such that the latter are identifiable by conflicts of empty space and occupied space. The presented concept of change detection has been successfully validated in experiments with recorded MLS data streams. Results are shown for test sites at which MLS data were acquired at different time intervals.

  9. Quality Analysis and Correction of Mobile Backpack Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Rönnholm, P.; Liang, X.; Kukko, A.; Jaakkola, A.; Hyyppä, J.

    2016-06-01

    Backpack laser scanning systems have emerged recently enabling fast data collection and flexibility to make measurements also in areas that cannot be reached with, for example, vehicle-based laser scanners. Backpack laser scanning systems have been developed both for indoor and outdoor use. We have developed a quality analysis process in which the quality of backpack laser scanning data is evaluated in the forest environment. The reference data was collected with an unmanned aerial vehicle (UAV) laser scanning system. The workflow included noise filtering, division of data into smaller patches, ground point extraction, ground data decimation, and ICP registration. As a result, we managed to observe the misalignments of backpack laser scanning data for 97 patches each including data from circa 10 seconds period of time. This evaluation revealed initial average misalignments of 0.227 m, 0.073 and -0.083 in the easting, northing and elevation directions, respectively. Furthermore, backpack data was corrected according to the ICP registration results. Our correction algorithm utilized the time-based linear transformation of backpack laser scanning point clouds. After the correction of data, the ICP registration was run again. This revealed remaining misalignments between the corrected backpack laser scanning data and the original UAV data. We found average misalignments of 0.084, 0.020 and -0.005 meters in the easting, northing and elevation directions, respectively.

  10. CONFOCAL LASER SCANNING MICROSCOPY OF APOPTOSIS IN WHOLE MOUSE OVARIES

    EPA Science Inventory

    Confocal Laser Scanning Microscopy of Apoptosis in Whole Mouse Ovaries. Robert M. Zucker Susan C. Jeffay and Sally D. Perreault Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Protection Agency, Research Triangle...

  11. CONFOCAL LASER SCANNING MICROSCOPY OF APOPTOSIS IN WHOLE MOUSE OVARIES

    EPA Science Inventory

    Confocal Laser Scanning Microscopy of Apoptosis in Whole Mouse Ovaries. Robert M. Zucker Susan C. Jeffay and Sally D. Perreault Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Protection Agency, Research Triangle...

  12. Terrestrial Laser Scanning Applications in Paleoseismology (Invited)

    NASA Astrophysics Data System (ADS)

    Arrowsmith, R.; Haddad, D. E.; Akciz, S. O.; Oldow, J. S.; Mauer, J.; Rhodes, D. D.

    2009-12-01

    Essential information about past earthquakes includes their locations, ages, and magnitudes. Documentation requires high accuracy three-dimensional measurements. We present three examples of recent earthquake geology research using terrestrial laser scanning (TLS): 1) the stratigraphic record and age of earthquakes along the south-central San Andreas Fault at Bidart, 2) geomorphic modification of surface rupture from the 1992 M7.3 Landers, California earthquake, and 3) negative indications of strong ground motion from precariously balanced rocks (PBRs) in an area of relative low seismicity in central Arizona. Sedimentary structures and earthquake-related features exposed in excavations are documented with mosaic photography, a time consuming process. Even carefully prepared mosaics have geometric errors due to edge matching, camera distortion, and non-planar walls. Instead of using photomosaics, we recently scanned the walls of 1-m wide trenches with short range TLS. We projected the resulting point cloud colored by photography acquired by the scanner to vertical planes representing the walls. With only a small overlap between adjacent co-registered scans, the orthophotos have sufficient resolution and superior geometric accuracy compared to the photomosaics. We have monitored the erosional modifications of a prominent ~1-m high fault scarp that formed in the 1992 Landers earthquake. Our repeated observations include photography and topographic survey. In 2008, we scanned the site and co-registered the scans and the prior surveys to document the geometry of the fault scarp. By subtracting the current topography from surface models based on prior surveys, we measured the erosion along the scarp. The largest changes are in the narrow knick channels that cross the scarp at the lower end of 104 m2 drainage basins. The knickpoints are a few 10s of cm wide, ~1 m deep, and a few m long. Separated abruptly from the knickpoint moving upstream, a ~10 m reach of the channel

  13. Reservoir shore development in long range terrestrial laser scanning monitoring.

    NASA Astrophysics Data System (ADS)

    Kaczmarek, Halina

    2016-04-01

    Shore zones of reservoirs are in most cases very active, getting transformed as a result of coastal processes and mass movements initiated on the slopes surrounding the reservoir. From the point of view of the users of water reservoirs shore recession strongly undesirable as it causes destruction to infrastructure and buildings located in the immediate vicinity of the reservoir. For this reason, reservoir shores require continuous geodetic monitoring. Fast and accurate geodetic measurements covering shore sections several kilometers long, often in poorly accessible areas, are available using long range terrestrial laser scanning (TLS). The possibilities of using long range terrestrial laser scanning are shown on the example of the reservoir Jeziorsko on the Warta River (Central Poland). This reservoir, created in the years 1986-1992, is a typical retention reservoir, the annual fluctuations of which reach 5 m. Depending on the water level its surface area ranges from 42.3 to 19.6 km2. The width of the reservoir is 2.5 km. The total shore length of the reservoir, developed in Quaternary till and sand-till sediments, is 44.3 km, including 30.1 km of the unreinforced shore. Out of the unreinforced shore 27% is subject to coastal erosion. The cliff heights vary from a few cm to 12.5 meters, and the current rate of the cliff recession ranges from 0 to 1.12 m/y. The study used a terrestrial long range laser scanner Riegl VZ-4000 of a range of up to 4000 m. It enabled conducting the measurements of the cliff recession from the opposite shore of the reservoir, with an angular resolution of 0.002°, which gives about 50 measurement points per 1 m2. The measurements were carried out in the years 2014-2015, twice a year, in early spring before high water level, and in late autumn at a dropping water level. This allowed the separation of the impact of coastal processes and frost weathering on the cliff recession and their quantitative determination. The size and nature of

  14. Noninvasive multiphoton imaging of cardiovascular structures using NIR femtosecond laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Schenke-Layland, Katja; Riemann, Iris; Stock, Ulrich A.; Konig, Karsten

    2004-07-01

    Near infrared (NIR) femtosecond laser scanning microscopy represents a novel and very promising medical diagnostic imaging technology for non-invasive cross-sectional analysis of living biological tissues. In this study multiphoton imaging has been performed to analyze the structural features of extracellular matrix (ECM) components, e.g. collagen and elastin, of living pulmonary and aortic heart valves. High-resolution autofluorescence and second harmonic generation (SHG) images of collagenous and elastic fibers were demonstrated using multifluorophore, multiphoton excitation at two different wavelengths and non-invasive optical sectioning, without the need of embedding or staining. The quality of the resulting three-dimensional images allowed exact differentiation of the ECM components. These experimental results indicated that NIR femtosecond laser scanning microscopy may prove to be a useful tool for the non-destructive monitoring and characterization of cardiovascular structures.

  15. Managing multiple image stacks from confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Zerbe, Joerg; Goetze, Christian H.; Zuschratter, Werner

    1999-05-01

    A major goal in neuroanatomy is to obtain precise information about the functional organization of neuronal assemblies and their interconnections. Therefore, the analysis of histological sections frequently requires high resolution images in combination with an overview about the structure. To overcome this conflict we have previously introduced a software for the automatic acquisition of multiple image stacks (3D-MISA) in confocal laser scanning microscopy. Here, we describe a Windows NT based software for fast and easy navigation through the multiple images stacks (MIS-browser), the visualization of individual channels and layers and the selection of user defined subregions. In addition, the MIS browser provides useful tools for the visualization and evaluation of the datavolume, as for instance brightness and contrast corrections of individual layers and channels. Moreover, it includes a maximum intensity projection, panning and zoom in/out functions within selected channels or focal planes (x/y) and tracking along the z-axis. The import module accepts any tiff-format and reconstructs the original image arrangement after the user has defined the sequence of images in x/y and z and the number of channels. The implemented export module allows storage of user defined subregions (new single image stacks) for further 3D-reconstruction and evaluation.

  16. Laser scanning cytometry: principles and applications-an update.

    PubMed

    Pozarowski, Piotr; Holden, Elena; Darzynkiewicz, Zbigniew

    2013-01-01

    Laser scanning cytometer (LSC) is the microscope-based cytofluorometer that offers a plethora of unique analytical capabilities, not provided by flow cytometry (FCM). This review describes attributes of LSC and covers its numerous applications derived from plentitude of the parameters that can be measured. Among many LSC applications the following are emphasized: (a) assessment of chromatin condensation to identify mitotic, apoptotic cells, or senescent cells; (b) detection of nuclear or mitochondrial translocation of critical factors such as NF-κB, p53, or Bax; (c) semi-automatic scoring of micronuclei in mutagenicity assays; (d) analysis of fluorescence in situ hybridization (FISH) and use of the FISH analysis attribute to measure other punctuate fluorescence patterns such as γH2AX foci or receptor clustering; (e) enumeration and morphometry of nucleoli and other cell organelles; (f) analysis of progeny of individual cells in clonogenicity assay; (g) cell immunophenotyping; (h) imaging, visual examination, or sequential analysis using different probes of the same cells upon their relocation; (i) in situ enzyme kinetics, drug uptake, and other time-resolved processes; (j) analysis of tissue section architecture using fluorescent and chromogenic probes; (k) application for hypocellular samples (needle aspirate, spinal fluid, etc.); and (l) other clinical applications. Advantages and limitations of LSC are discussed and compared with FCM.

  17. Efficient terrestrial laser scan segmentation exploiting data structure

    NASA Astrophysics Data System (ADS)

    Mahmoudabadi, Hamid; Olsen, Michael J.; Todorovic, Sinisa

    2016-09-01

    New technologies such as lidar enable the rapid collection of massive datasets to model a 3D scene as a point cloud. However, while hardware technology continues to advance, processing 3D point clouds into informative models remains complex and time consuming. A common approach to increase processing efficiently is to segment the point cloud into smaller sections. This paper proposes a novel approach for point cloud segmentation using computer vision algorithms to analyze panoramic representations of individual laser scans. These panoramas can be quickly created using an inherent neighborhood structure that is established during the scanning process, which scans at fixed angular increments in a cylindrical or spherical coordinate system. In the proposed approach, a selected image segmentation algorithm is applied on several input layers exploiting this angular structure including laser intensity, range, normal vectors, and color information. These segments are then mapped back to the 3D point cloud so that modeling can be completed more efficiently. This approach does not depend on pre-defined mathematical models and consequently setting parameters for them. Unlike common geometrical point cloud segmentation methods, the proposed method employs the colorimetric and intensity data as another source of information. The proposed algorithm is demonstrated on several datasets encompassing variety of scenes and objects. Results show a very high perceptual (visual) level of segmentation and thereby the feasibility of the proposed algorithm. The proposed method is also more efficient compared to Random Sample Consensus (RANSAC), which is a common approach for point cloud segmentation.

  18. Laser scanning saturated structured illumination microscopy based on phase modulation

    NASA Astrophysics Data System (ADS)

    Huang, Yujia; Zhu, Dazhao; Jin, Luhong; Kuang, Cuifang; Xu, Yingke; Liu, Xu

    2017-08-01

    Wide-field saturated structured illumination microscopy has not been widely used due to the requirement of high laser power. We propose a novel method called laser scanning saturated structured illumination microscopy (LS-SSIM), which introduces high order of harmonics frequency and greatly reduces the required laser power for SSIM imaging. To accomplish that, an excitation PSF with two peaks is generated and scanned along different directions on the sample. Raw images are recorded cumulatively by a CCD detector and then reconstructed to form a high-resolution image with extended optical transfer function (OTF). Our theoretical analysis and simulation results show that LS-SSIM method reaches a resolution of 0.16 λ, equivalent to 2.7-fold resolution than conventional wide-field microscopy. In addition, LS-SSIM greatly improves the optical sectioning capability of conventional wide-field illumination system by diminishing our-of-focus light. Furthermore, this modality has the advantage of implementation in multi-photon microscopy with point scanning excitation to image samples in greater depths.

  19. An Automated Road Roughness Detection from Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Kumar, P.; Angelats, E.

    2017-05-01

    Rough roads influence the safety of the road users as accident rate increases with increasing unevenness of the road surface. Road roughness regions are required to be efficiently detected and located in order to ensure their maintenance. Mobile Laser Scanning (MLS) systems provide a rapid and cost-effective alternative by providing accurate and dense point cloud data along route corridor. In this paper, an automated algorithm is presented for detecting road roughness from MLS data. The presented algorithm is based on interpolating smooth intensity raster surface from LiDAR point cloud data using point thinning process. The interpolated surface is further processed using morphological and multi-level Otsu thresholding operations to identify candidate road roughness regions. The candidate regions are finally filtered based on spatial density and standard deviation of elevation criteria to detect the roughness along the road surface. The test results of road roughness detection algorithm on two road sections are presented. The developed approach can be used to provide comprehensive information to road authorities in order to schedule maintenance and ensure maximum safety conditions for road users.

  20. Stereo vision based hand-held laser scanning system design

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Xu, Jun; Wang, Jinming

    2011-11-01

    Although 3D scanning system is used more and more broadly in many fields, such computer animate, computer aided design, digital museums, and so on, a convenient scanning device is expansive for most people to afford. In another hand, imaging devices are becoming cheaper, a stereo vision system with two video cameras cost little. In this paper, a hand held laser scanning system is design based on stereo vision principle. The two video cameras are fixed tighter, and are all calibrated in advance. The scanned object attached with some coded markers is in front of the stereo system, and can be changed its position and direction freely upon the need of scanning. When scanning, the operator swept a line laser source, and projected it on the object. At the same time, the stereo vision system captured the projected lines, and reconstructed their 3D shapes. The code markers are used to translate the coordinate system between scanned points under different view. Two methods are used to get more accurate results. One is to use NURBS curves to interpolate the sections of the laser lines to obtain accurate central points, and a thin plate spline is used to approximate the central points, and so, an exact laser central line is got, which guards an accurate correspondence between tow cameras. Another way is to incorporate the constraint of laser swept plane on the reconstructed 3D curves by a PCA (Principle Component Analysis) algorithm, and more accurate results are obtained. Some examples are given to verify the system.

  1. Super-Resolution Laser Scanning Microscopy through Spatiotemporal Modulation

    PubMed Central

    Lu, Ju; Min, Wei; Conchello, José-Angel; Xie, Xiaoliang Sunney; Lichtman, Jeff W.

    2009-01-01

    Super-resolution optical microscopy has attracted great interest among researchers in many fields, especially in biology where the scale of physical structures and molecular processes fall below the diffraction limit of resolution for light. As one of the emerging techniques, structured illumination microscopy can double the resolution by shifting unresolvable spatial frequencies into the pass-band of the microscope through spatial frequency mixing with a wide-field structured illumination pattern. However, such a wide-field scheme typically can only image optically thin samples and is incompatible with multiphoton processes such as two-photon fluorescence, which require point scanning with a focused laser beam. Here, we propose two new super-resolution schemes for laser scanning microscopy by generalizing the concept of a spatially nonuniform imaging system. One scheme, scanning patterned illumination (SPIN) microscopy, employs modulation of the excitation combined with temporally cumulative imaging by a nondescanned array detector. The other scheme, scanning patterned detection (SPADE) microscopy, utilizes detection modulation together with spatially cumulative imaging, in this case by a nondescanned single-element detector. When combined with multiphoton excitation, both schemes can image thick samples with three-dimensional optical sectioning and much improved resolution. PMID:19743870

  2. Confocal laser scanning microscopy in study of bone calcification

    NASA Astrophysics Data System (ADS)

    Nishikawa, Tetsunari; Kokubu, Mayu; Kato, Hirohito; Imai, Koichi; Tanaka, Akio

    2012-12-01

    Bone regeneration in mandible and maxillae after extraction of teeth or tumor resection and the use of rough surface implants in bone induction must be investigated to elucidate the mechanism of calcification. The calcified tissues are subjected to chemical decalcification or physical grinding to observe their microscopic features with light microscopy and transmission electron microscopy where the microscopic tissue morphology is significantly altered. We investigated the usefulness of confocal laser scanning microscopy (CLSM) for this purpose. After staggering the time of administration of calcein and alizarin red to experimental rats and dogs, rat alveolar bone and dog femur grafted with coral as scaffold or dental implants were observed with CLSM. In rat alveolar bone, the calcification of newly-formed bone and net-like canaliculi was observed at the mesial bone from the roots progressed at the rate of 15 μm/day. In dog femur grafted with coral, newly-formed bones along the space of coral were observed in an orderly manner. In dog femur with dental implants, after 8 weeks, newly-formed bone proceeded along the rough surface of the implants. CLSM produced high-magnification images of newly-formed bone and thin sections were not needed.

  3. Ultrafast pulse-pair control in multiphoton fluorescence laser-scanning microscopy.

    PubMed

    De, Arijit Kumar; Goswami, Debabrata

    2009-01-01

    In multiphoton fluorescence laser-scanning microscopy, ultrafast laser pulses [i.e., light pulses having pulse width sections of common fluorophores. Because of the broad overlapping two-photon absorption spectra of fluorophores and the large spectral bandwidth of a short pulse, simultaneous excitation of many fluorophores is common, which justifies a persistent demand for selective excitation of individual fluorophores. We describe the use of pulse-pair excitation with possibilities of controlling molecular fluorescence in laser-scanning microscopy and compare it with coherent control using pulse sequence [De and Goswami, "Coherent control in multiphoton fluorescence imaging," Proc. SPIE 7183, 71832B (2009)].

  4. Application of in vivo laser scanning microscope in dermatology

    NASA Astrophysics Data System (ADS)

    Lademann, Juergen; Richter, H.; Otberg, N.; Lawrenz, F.; Blume-Peytavi, U.; Sterry, W.

    2003-10-01

    The state of the art of in-vivo and in-vitro penetration measurements of topically applied substances is described. Only optical techniques represent online measuring methods based on the absorption or scattering properties of the topically applied substances. Laser scanning microscopy (LSM) has become a promising method for investigations in dermatology and skin physiology, after it was possible to analyze the skin surface on any body side in-vivo. In the present paper the application of a dermatological laser scanning microscope for penetration and distribution measurements of topically applied substances is described. The intercellular and follicular penetration pathways were studied.

  5. Two-Photon Laser Scanning Stereomicroscopy for Fast Volumetric Imaging

    PubMed Central

    Yang, Yanlong; Yao, Baoli; Lei, Ming; Dan, Dan; Li, Runze; Horn, Mark Van; Chen, Xun; Li, Yang; Ye, Tong

    2016-01-01

    Bessel beams have been successfully used in two-photon laser scanning fluorescence microscopy to extend the depth of field (EDF), which makes it possible to observe fast events volumetrically. However, the depth information is lost due to integration of fluorescence signals along the propagation direction. We describe the design and implementation of two-photon lasers scanning stereomicroscopy, which allows viewing dynamic processes in three-dimensional (3D) space stereoscopically in real-time with shutter glasses at the speed of 1.4 volumes per second. The depth information can be appreciated by human visual system or be recovered with correspondence algorithms for some cases. PMID:27997624

  6. Laser scanning cytometry as a tool for biomarker validation

    NASA Astrophysics Data System (ADS)

    Mittag, Anja; Füldner, Christiane; Lehmann, Jörg; Tarnok, Attila

    2013-03-01

    Biomarkers are essential for diagnosis, prognosis, and therapy. As diverse is the range of diseases the broad is the range of biomarkers and the material used for analysis. Whereas body fluids can be relatively easily obtained and analyzed, the investigation of tissue is in most cases more complicated. The same applies for the screening and the evaluation of new biomarkers and the estimation of the binding of biomarkers found in animal models which need to be transferred into applications in humans. The latter in particular is difficult if it recognizes proteins or cells in tissue. A better way to find suitable cellular biomarkers for immunoscintigraphy or PET analyses may be therefore the in situ analysis of the cells in the respective tissue. In this study we present a method for biomarker validation using Laser Scanning Cytometry which allows the emulation of future in vivo analysis. The biomarker validation is exemplarily shown for rheumatoid arthritis (RA) on synovial membrane. Cryosections were scanned and analyzed by phantom contouring. Adequate statistical methods allowed the identification of suitable markers and combinations. The fluorescence analysis of the phantoms allowed the discrimination between synovial membrane of RA patients and non-RA control sections by using median fluorescence intensity and the "affected area". As intensity and area are relevant parameters of in vivo imaging (e.g. PET scan) too, the presented method allows emulation of a probable outcome of in vivo imaging, i.e. the binding of the target protein and hence, the validation of the potential of the respective biomarker.

  7. Laser-scanning techniques for rapid ballistics identification

    NASA Technical Reports Server (NTRS)

    Woodburgy, R. C.; Nakich, R. B.

    1974-01-01

    Two different laser-scanning methods may be utilized. In each case scanned cylindrical bullet surface is displayed ""unwrapped'' on oscilloscope screen. Bullets are compared by photographing each display and superimposing negatives of two images. With some modifications bullets can be scanned and compared by superimposing images on screen of dual-beam oscilloscope.

  8. CONFOCAL LASER SCANNING MICROSCOPY OF RAT FOLLICLE DEVELOPMENT

    EPA Science Inventory

    This study used confocal laser scanning microscopy (CLSM) to study follicular development in millimeter pieces of rat ovary. To use this technology, it is essential to stain the tissue before laser excitation with the confocal microscope. Various fluorescent stains (Yo-Pro, Bo-Pr...

  9. FOOD SURFACE TEXTURE MEASUREMENT USING REFLECTIVE CONFOCAL LASER SCANNING MICROSCOPY

    USDA-ARS?s Scientific Manuscript database

    Confocal laser scanning microscopy (CLSM) was used in the reflection mode to characterize the surface texture (roughness) of sliced food surfaces. Sandpapers of grit size between 150 and 600 were used as the height reference to standardize the CLSM hardware settings. Sandpaper particle sizes were v...

  10. CONFOCAL LASER SCANNING MICROSCOPY OF RAT FOLLICLE DEVELOPMENT

    EPA Science Inventory

    This study used confocal laser scanning microscopy (CLSM) to study follicular development in millimeter pieces of rat ovary. To use this technology, it is essential to stain the tissue before laser excitation with the confocal microscope. Various fluorescent stains (Yo-Pro, Bo-Pr...

  11. Intersecting kink bands quantified by laser scanning and differential geometry

    NASA Astrophysics Data System (ADS)

    Dunham, R. E.; Crider, J. G.

    2010-12-01

    Microtopography derived from laser scanning is expressed by DEMs that can be analyzed using differential geometry. We apply this technique to rock hand samples containing intersecting kink bands in order to quantitatively describe the shape of a folded surface and understand the localization of strain in deformed rocks. This study is the first to apply laser scanning and geometric curvature analysis to intersecting kink bands in order to better describe the variation of kink band geometries and intersections in plan view and to evaluate relationships between different kink band parameters. A complex set of monoclinal contractional kink bands is well exposed in outcrops of the Darrington Phyllite on Samish Island, northwestern Washington, which provide a three-dimensional view of kink band geometries. Kink bands in cross section have straight, parallel boundaries that deform a well-defined foliation; in plan view, however, kink band hinges curve and anastomose across the foliation surface, and adjacent bands commonly intersect. Three types of intersections are common: crossing (X), bifurcating (Y), and obliquely truncating (λ); many kink bands also taper out along strike. Geometric curvature analyses were performed on millimeter-resolution DEMs of hand samples containing intersecting kink bands. Maps of different curvature parameters (e.g. mean curvature, geologic curvature) clearly outline kink bands in the samples and illuminate the behavior of kink band hinges in each type of intersection. In X-type intersections, curvature increases where two hinges of similar kink sense cross (i.e. anticlinal/anticlinal hinges), increasing strain; where two hinges of opposing sense cross (anticlinal/synclinal), curvature decreases and the surface is effectively unfolded. In Y-type intersections, a single parent band widens and splits into two equally narrow daughter bands, and new inner hinges are nucleated below the bifurcation point. The two daughter bands accommodate

  12. Epiphany sealer penetration into dentinal tubules: Confocal laser scanning microscopic study.

    PubMed

    Ravi, S V; Nageswar, Rao; Swapna, Honwad; Sreekant, Puthalath; Ranjith, Madhavan; Mahidhar, Surabhi

    2014-03-01

    The aim of the following study was to evaluate the percentage and average depth of epiphany sealer penetration into dentinal tubules among the coronal, middle and apical thirds of the root using the confocal laser scanning microscopy (CLSM). A total of 10 maxillary central incisors were prepared and obturated with Resilon-Epiphany system. Sealer was mixed with fluorescent rhodamine B isothiyocyanate dye for visibility under confocal microscope. Teeth were cross-sectioned into coronal, middle and apical sections-2 mm thick. Sections were observed under CLSM. Images were analyzed for percentage and average depth of sealer penetration into dentinal tubules using the lasso tool in Adobe Photoshop CS3 (Adobe systems incorporated, San jose, CA) and laser scanning microscopy (LSM 5) image analyzer. One-way analysis of variance with Student Neuman Keuls post hoc tests, Kruskal-Wallis test and Wilcoxon signed-rank post hoc tests. The results showed that a higher percentage of sealer penetration in coronal section-89.23%, followed by middle section-84.19% and the apical section-64.9%. Average depth of sealer penetration for coronal section was 526.02 μm, middle-385.26 μm and apical-193.49 μm. Study concluded that there was higher epiphany sealer penetration seen in coronal followed by middle and least at apical third of the roots.

  13. Optimal lens design and use in laser-scanning microscopy

    PubMed Central

    Negrean, Adrian; Mansvelder, Huibert D.

    2014-01-01

    In laser-scanning microscopy often an off-the-shelf achromatic doublet is used as a scan lens which can reduce the available diffraction-limited field-of-view (FOV) by a factor of 3 and introduce chromatic aberrations that are scan angle dependent. Here we present several simple lens designs of superior quality that fully make use of high-NA low-magnification objectives, offering diffraction-limited imaging over a large FOV and wavelength range. We constructed a two-photon laser-scanning microscope with optimized custom lenses which had a near diffraction limit point-spread-function (PSF) with less than 3.6% variation over a 400 µm FOV and less than 0.5 µm lateral color between 750 and 1050 nm. PMID:24877017

  14. Semantic Labelling of Road Furniture in Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Li, F.; Oude Elberink, S.; Vosselman, G.

    2017-09-01

    Road furniture semantic labelling is vital for large scale mapping and autonomous driving systems. Much research has been investigated on road furniture interpretation in both 2D images and 3D point clouds. Precise interpretation of road furniture in mobile laser scanning data still remains unexplored. In this paper, a novel method is proposed to interpret road furniture based on their logical relations and functionalities. Our work represents the most detailed interpretation of road furniture in mobile laser scanning data. 93.3 % of poles are correctly extracted and all of them are correctly recognised. 94.3 % of street light heads are detected and 76.9 % of them are correctly identified. Despite errors arising from the recognition of other components, our framework provides a promising solution to automatically map road furniture at a detailed level in urban environments.

  15. A synthetic covariance matrix for monitoring by terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Kauker, Stephanie; Schwieger, Volker

    2017-06-01

    Modelling correlations within laser scanning point clouds can be achieved by using synthetic covariance matrices. These are based on the elementary error model which contains different groups of correlations: non-correlating, functional correlating and stochastic correlating. By applying the elementary error model on terrestrial laser scanning several groups of error sources should be considered: instrumental, atmospheric and object based. This contribution presents calculations for the Leica HDS 7000. The determined variances and the spatial correlations of the points are estimated and discussed. Hereby, the mean standard deviation of the point cloud is up to 0.6 mm and the mean correlation is about 0.6 with respect to 5 m scanning range. The change of these numerical values compared to previous publications as Kauker and Schwieger [17] is mainly caused by the complete consideration of the object related error sources.

  16. Superconducting Magnet System for a Low Temperature Laser Scanning Microscope

    DTIC Science & Technology

    2006-09-22

    Our initial studies with the LTLSM bought with this equipment grant show that the intragrain critical current density crosses over with the...SUBTITLE 5a. CONTRACT NUMBER Superconducting Magnet System for a Low Temperature Laser Scanning Microscope 5b. GRANT NUMBER FA9550-05-1-0425 5c...ADDRESS(ES) 8. PERFORMING ORGANIZATION REPORT NUMBER Applied Superconductivity Center 1500 Engineering Drive University of Wisconsin -Madison Room 909

  17. Software for visualization, analysis, and manipulation of laser scan images

    NASA Astrophysics Data System (ADS)

    Burnsides, Dennis B.

    1997-03-01

    The recent introduction of laser surface scanning to scientific applications presents a challenge to computer scientists and engineers. Full utilization of this two- dimensional (2-D) and three-dimensional (3-D) data requires advances in techniques and methods for data processing and visualization. This paper explores the development of software to support the visualization, analysis and manipulation of laser scan images. Specific examples presented are from on-going efforts at the Air Force Computerized Anthropometric Research and Design (CARD) Laboratory.

  18. Flow cytometry and laser scanning cytometry, a comparison of techniques.

    PubMed

    Mach, William J; Thimmesch, Amanda R; Orr, James A; Slusser, Joyce G; Pierce, Janet D

    2010-08-01

    Flow and laser scanning cytometry are used extensively in research and clinical settings. These techniques provide clinicians and scientists information about cell functioning in a variety of health and disease states. An in-depth knowledge and understanding of cytometry techniques can enhance interpretation of current research findings. Our goal with this review is to reacquaint clinicians and scientists with information concerning differences between flow and laser scanning cytometry by comparing their capabilities and applications. A Pubmed abstract search was conducted for articles on research, reviews and current texts relating to origins and use of flow and laser scanning cytometry. Attention was given to studies describing application of these techniques in the clinical setting. Both techniques exploit interactions between the physical properties of light. Data are immediately and automatically acquired; they are distinctly different. Flow cytometry provides valuable rapid information about a wide variety of cellular or particle characteristics. This technique does not provide the scanned high resolution image analysis needed for investigators to localize areas of interest within the cell for quantification. Flow cytometry requires that the sample contain a large amount disaggregated, single, suspended cells. Laser scanning cytometry is slide-based and does not require as large of a sample. The tissue sample is affixed to a slide allowing repeated sample analyses. These cytometry techniques are used in the clinical setting to understand pathophysiological derangements associated with many diseases; cardiovascular disease, diabetes, acute lung injury, hemorrhagic shock, surgery, cancer and Alzheimer's disease. Understanding the differences between FCM and LSCM can assist investigators in planning and design of their research or clinical testing. Researchers and clinicians optimize these technique capabilities with the cellular characteristics they wish to

  19. Control Measurements of Crane Rails Performed by Terrestrial Laser Scanning

    PubMed Central

    Kregar, Klemen; Možina, Jan; Ambrožič, Tomaž; Kogoj, Dušan; Marjetič, Aleš; Štebe, Gašper; Savšek, Simona

    2017-01-01

    This article presents a method for measuring the geometry of crane rails with terrestrial laser scanning (TLS). Two sets of crane rails were divided into segments, their planes were adjusted, and the characteristic rail lines were defined. We used their profiles to define the positional and altitude deviations of the rails, the span and height difference between the two rails, and we also verified that they complied with the Eurocode 3 standard. We tested the method on crane rails at the hydroelectric power plant in Krško and the thermal power plant in Brestanica. We used two scanning techniques: “pure” TLS (Riegel VZ-400) and “hybrid” TLS (Leica MS50) scanning. This article’s original contribution lies in the detailed presentation of the computations used to define the characteristic lines of the rails without using the numeric procedures from existing software packages. We also analysed the influence of segment length and point density on the rail geometry results, and compared the two laser scanning techniques. We also compared the results obtained by terrestrial laser scanning with the results obtained from the classic polar method, which served as a reference point for its precision. PMID:28726755

  20. Control Measurements of Crane Rails Performed by Terrestrial Laser Scanning.

    PubMed

    Kregar, Klemen; Možina, Jan; Ambrožič, Tomaž; Kogoj, Dušan; Marjetič, Aleš; Štebe, Gašper; Savšek, Simona

    2017-07-20

    This article presents a method for measuring the geometry of crane rails with terrestrial laser scanning (TLS). Two sets of crane rails were divided into segments, their planes were adjusted, and the characteristic rail lines were defined. We used their profiles to define the positional and altitude deviations of the rails, the span and height difference between the two rails, and we also verified that they complied with the Eurocode 3 standard. We tested the method on crane rails at the hydroelectric power plant in Krško and the thermal power plant in Brestanica. We used two scanning techniques: "pure" TLS (Riegel VZ-400) and "hybrid" TLS (Leica MS50) scanning. This article's original contribution lies in the detailed presentation of the computations used to define the characteristic lines of the rails without using the numeric procedures from existing software packages. We also analysed the influence of segment length and point density on the rail geometry results, and compared the two laser scanning techniques. We also compared the results obtained by terrestrial laser scanning with the results obtained from the classic polar method, which served as a reference point for its precision.

  1. Clinical applications of in vivo fluorescence confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Oh, Chilhwan; Park, Sangyong; Kim, Junhyung; Ha, Seunghan; Park, Gyuman; Lee, Gunwoo; Lee, Onseok; Chun, Byungseon; Gweon, Daegab

    2008-02-01

    Living skin for basic and clinical research can be evaluated by Confocal Laser Scanning Microscope (CLSM) non-invasively. CLSM imaging system can achieve skin image its native state either "in vivo" or "fresh biopsy (ex vivo)" without fixation, sectioning and staining that is necessary for routine histology. This study examines the potential fluorescent CLSM with a various exogenous fluorescent contrast agent, to provide with more resolution images in skin. In addition, in vivo fluorescent CLSM researchers will be extended a range of potential clinical application. The prototype of our CLSM system has been developed by Prof. Gweon's group. The operating parameters are composed of some units, such as illuminated wavelength 488 nm, argon illumination power up to 20mW on the skin, objective lens, 0.9NA oil immersion, axial resolution 1.0μm, field of view 200μm x 100μm (lateral resolution , 0.3μm). In human volunteer, fluorescein sodium was administrated topically and intradermally. Animal studies were done in GFP transgenic mouse, IRC mouse and pig skin. For imaging of animal skin, fluorescein sodium, acridine orange, and curcumine were used for fluorescein contrast agent. We also used the GFP transgenic mouse for fluorescein CLSM imaging. In intact skin, absorption of fluorescein sodium by individual corneocyte and hair. Intradermal administrated the fluorescein sodium, distinct outline of keratinocyte cell border could be seen. Curcumin is a yellow food dye that has similar fluorescent properties to fluorescein sodium. Acridin Orange can be highlight nuclei in viable keratinocyte. In vivo CLSM of transgenic GFP mouse enable on in vivo, high resolution view of GFP expressing skin tissue. GFP signals are brightest in corneocyte, kertinocyte, hair and eccrine gland. In intact skin, absorption of fluorescein sodium by individual corneocyte and hair. Intradermal administrated the fluorescein sodium, distinct outline of keratinocyte cell border could be seen. In

  2. Modelling Braided River Morphodynamics With Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Brasington, J.; Wheaton, J. M.; Vericat, D.; Hodge, R.

    2007-12-01

    Advances in topographic survey and terrain modelling have enabled a revolution in the study in the fluvial morphodynamics in the last decade. Prior to the advent of electronic tacheometry in the 1990s, the analysis of channel dynamics was typically inferred from a combination of cross-section surveys and planform mapping. Distributed surveys acquired with GPS or EDMs enabled this analysis to be dimensionally extended and the pattern and magnitude morphodynamics elucidated in 3D; in particular through DTM differencing. Continuing developments in survey technology are now posed to reset this field once again. Now no longer confined to the laboratory, ruggedized laser scanners are capable of acquiring between 4-50,000 observations per second, at ranges exceeding 100 m. This latest development creates the potential for typical reach-scale (1-10 km) topographic datasets to rise in size by 7 orders of magnitude (hundreds to billions of points) in the coming years. Terrestrial Laser Scanning (TLS) offers a wealth of opportunities to better monitor fluvial systems; improving models of cut-and-fill, roughness and enhancing the prospect for ever more detailed parameterizations for fluid models. While this technology enables the creation of 'virtual facsimiles' of landscapes, the demands of storing, processing and modelling geomorphological products from such data requires a wholesale reappraisal of our data management and modelling methods. Here we outline a field-to-product methodology for TLS of fluvial systems using data from two annual surveys of a 1 km reach of the River Feshie, Scotland. These surveys delivered 3D point cloud datasets, incorporating over 200 million xyz observations, with median spatial densities of over 1000 pts/m2. The surveys were fixed to a GPS-based control network, including over 200 coincident tie- points to register multiple setups to a global coordinate system (RMS errors 0.002-0.011 m). Modelling reach-scale geometries from such dense point

  3. Transmissive liquid-crystal device correcting primary coma aberration and astigmatism in laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2016-03-01

    Laser scanning microscopy allows 3D cross-sectional imaging inside biospecimens. However, certain aberrations produced can degrade the quality of the resulting images. We previously reported a transmissive liquid-crystal device that could compensate for the predominant spherical aberrations during the observations, particularly in deep regions of the samples. The device, inserted between the objective lens and the microscope revolver, improved the image quality of fixed-mouse-brain slices that were observed using two-photon excitation laser scanning microscopy, which was originally degraded by spherical aberration. In this study, we developed a transmissive device that corrects primary coma aberration and astigmatism, motivated by the fact that these asymmetric aberrations can also often considerably deteriorate image quality, even near the sample surface. The device's performance was evaluated by observing fluorescent beads using single-photon excitation laser scanning microscopy. The fluorescence intensity in the image of the bead under a cover slip tilted in the y-direction was increased by 1.5 times after correction by the device. Furthermore, the y- and z-widths of the imaged bead were reduced to 66% and 65%, respectively. On the other hand, for the imaged bead sucked into a glass capillary in the longitudinal x-direction, correction with the device increased the fluorescence intensity by 2.2 times compared to that of the aberrated image. In addition, the x-, y-, and z-widths of the bead image were reduced to 75%, 53%, and 40%, respectively. Our device successfully corrected several asymmetric aberrations to improve the fluorescent signal and spatial resolution, and might be useful for observing various biospecimens.

  4. Visualization and quantification of dentin structure using confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Kimura, Yuichi; Wilder-Smith, Petra B.; Krasieva, Tatiana B.; Arrastia-Jitosho, Anna-Marie A.; Liaw, Lih-Huei L.; Matsumoto, Koukichi

    1997-07-01

    Dentin was visualized using a new fluorescence technique and confocal laser scanning microscopy. Thirty extracted human teeth showing no clinical signs of caries were investigated. All teeth were horizontally sectioned to approximately 200 micrometers thickness and sections were subjected to different pretreatment conditions as follows: vacuum only, ultrasonication only, sodium hypochlorite only, sodium hypochlorite and vacuum, sodium hypochlorite and ultrasonication, and a combination of sodium hypochlorite, vacuum, and ultrasonication. Some samples were left untreated to serve as control. Following pretreatment, rhodamine 123 fluorescent dye was used for staining at concentrations ranging from 10-3 to 10-7 M for 1 to 24 h at pH 6.0, 6.5, or 7.4. Optical staining occurred at pH 7.4 and concentrations >= 10-5 M over 3 h or longer. Surface images obtained using confocal laser scanning microscopy were similar to those observed by scanning electron microscopy without the need for sample- altering conventional scanning electron microscope preparation techniques. Subsurface imaging to a depth of approximately 60 micrometers was achieved using confocal laser microscope techniques. This fluorescence technique offers a useful new alternative for visualization and quantification of dentin.

  5. Automatic road edge detection from Mobile Laser Scanning (MLS)

    NASA Astrophysics Data System (ADS)

    Cabo, Carlos; García-Cortés, Silverio; Menéndez-Díaz, Agustín.; Ordoñez, Celestino

    2016-11-01

    In this article we present an algorithm for automatic road edge detection from MLS (Mobile Laser Scanning) data. The method takes advantage of linear structures derived from MLS point clouds. These lines are extracted from the point cloud and grouped following geometric restrictions. Then, the outlines of the groups are extracted as road edges. Finally, a moving window filter is applied to those points in order to remove outliers and delineate the road edge. The method was tested on an 800m stretch of road, and the results were checked through visual inspection. Correctness and completeness were 99.1% and 97.5%, respectively.

  6. Optics designs and system MTF for laser scanning displays

    NASA Astrophysics Data System (ADS)

    Urey, Hakan; Nestorovic, Ned; Ng, Baldwin S.; Gross, Abraham A.

    1999-07-01

    The Virtual Retinal DisplayTM (VRDTM) technology is a new display technology being developed at Microvision Inc. The displayed image is scanned onto the viewer's retina using low- power red, green, and blue light sources. Microvision's proprietary miniaturized scanner designs make VRD system very well suited for head-mounted displays. In this paper we discuss some of the advantages of the VRD technology, various ocular designs for HMD and other applications, and details of constructing a system MTF budget for laser scanning systems that includes electronics, modulators, scanners, and optics.

  7. Registration Procedures for Terrestrial Laser Scanning in Geomorphologic Studies

    NASA Astrophysics Data System (ADS)

    Collins, B. D.; Kayen, R.; Minasian, D.

    2006-12-01

    Terrestrial based laser scanning, from either vehicle or tripod mounts allows the collection of geomorphologic data at previously unprecedented detail and volume. However, despite the ease of collecting this data in many settings, post-processing datasets collected without laser-visible reflectors within individual scans can lead to difficulties in both registration and georeferencing procedures. We have been actively involved in gathering data sets from a number of different environments and have been developing various techniques to post-process the data using surface registration methods. These methods use the point cloud or model surface to find a best-fit of the three-dimensional terrain. Recently, we have collected laser scan data of levee breaches in New Orleans following Hurricane Katrina, a glacial cirque basin in the Canadian Rockies, a deep-seated landslide mass in Ventura County, California, rapidly evolving coastal bluffs in Central California, and sand bars and archeological sites in Grand Canyon National Park, Arizona. In each of these projects, setting up accurately surveyed reflectors was impractical due to the locations dynamic and fairly inaccessible setting. Robust surface registration procedures were therefore needed to provide accurate terrain models. We have used laser scanning results from these projects to assess the efficiency of the various post- processing methodologies for obtaining final registered and georeferenced point clouds and surface models. We compared registration results obtained both with and without accurate GPS coordinates for the laser scanner origin (Ventura and coastal landslides), use of a supporting total station unit (Grand Canyon), and collection of DGPS data on targets imaged in the LIDAR data after the scanning process (Katrina Levees). In many of these settings, the model fit improved by four times, from a root mean square error of 20 cm to 5cm when accurately surveyed coordinates were utilized for the laser scan

  8. Smart laser scanning sampling head design for image acquisition applications.

    PubMed

    Amin, M Junaid; Riza, Nabeel A

    2013-07-10

    A smart laser scanning sampling head design is presented using an electronically controlled variable focal length lens to achieve the smallest sampling laser spot possible at target plane distances reaching 8 m. A proof-of-concept experiment is conducted using a 10 mW red 633 nm laser coupled with beam conditioning optics that includes an electromagnetically actuated deformable membrane liquid lens to demonstrate sampling laser spot radii under 1 mm over a target range of 20-800 cm. Applications for the proposed sampling head are diverse and include laser machining and component inspection.

  9. Monitoring stream bluff erosion using repeat terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Neitzel, G.; Gran, K. B.

    2012-12-01

    Terrestrial laser scanning (TLS) technology provides high-resolution topographic data that can be used to detect geomorphic change in fluvial environments. In this study, we utilize successive terrestrial laser scans to investigate the relationship between peak flow rates and stream bluff erosion in the Amity Creek watershed in Duluth, Minnesota. We also combine TLS scan results with bluff inventories from airborne lidar to estimate the volume of sediment erosion from bluffs in the watershed, which is an important source of fine sediment contributing to the creek's turbidity impairment. We selected nine study bluffs to conduct terrestrial laser scans on after all significant flood events over a two-year time period. The study employs a Faro Focus 3D phase-shift laser to collect data. Post-processing of the TLS-point cloud data sets involves: (1) removal of vegetation and objects other than the erosional surface of interest; (2) decimation of the point cloud in PC Tools and extraction of zmin values to produce a data set manageable in GIS; (3) creation of a bare earth digital elevation model (DEM) for each set of scans using ArcMap; and (4) utilization of Geomorphic Change Detection (GCD) software to generate DEMs of Difference (DODs) from subsequent terrestrial laser scans. Preliminary results from three flooding events indicate significant erosional activity at all field sites. Slumps were observed at two bluffs following spring melt and freeze/thaw cycling. Two major precipitation events in late spring and early summer provided a unique opportunity to observe the impact of extreme high flow events on bluff erosion throughout the watershed using TLS technology. 4.75 inches of intermittent rain over a six-day period in late May 2012 (May 23-28) resulted in slumping at many bluffs and one major failure. The ≥100-year flood that occurred on June 19-20 (7.25 inches), 2012 was powerful enough to induce considerable channel change. Slumps occurred at six study sites

  10. Laser-scanning Doppler photoacoustic microscopy based on temporal correlation

    NASA Astrophysics Data System (ADS)

    Song, Wei; Liu, Wenzhong; Zhang, Hao F.

    2013-05-01

    We present a methodology to measure absolute flow velocity using laser-scanning photoacoustic microscopy. To obtain the Doppler angle, the angle between ultrasonic detection axis and flow direction, we extracted the distances between the transducer and three adjacent scanning points along the flow and repeatedly applied the law of cosines. To measure flow velocity along the ultrasonic detection axis, we calculated the time shift between two consecutive photoacoustic waves at the same scanning point, then converted the time shift to velocity according to the sound velocity and time interval between two laser illuminations. We verified our method by imaging flow phantoms.

  11. Visualisation of urban airborne laser scanning data with occlusion images

    NASA Astrophysics Data System (ADS)

    Hinks, Tommy; Carr, Hamish; Gharibi, Hamid; Laefer, Debra F.

    2015-06-01

    Airborne Laser Scanning (ALS) was introduced to provide rapid, high resolution scans of landforms for computational processing. More recently, ALS has been adapted for scanning urban areas. The greater complexity of urban scenes necessitates the development of novel methods to exploit urban ALS to best advantage. This paper presents occlusion images: a novel technique that exploits the geometric complexity of the urban environment to improve visualisation of small details for better feature recognition. The algorithm is based on an inversion of traditional occlusion techniques.

  12. Automating laser scanning of 3D surfaces for reverse engineering

    NASA Astrophysics Data System (ADS)

    Chan, Vincent H.; Bradley, Colin H.; Vickers, Geoffrey W.

    1997-12-01

    Application of current 3-D laser scanning systems to reverse engineering is limited by two obstacles. The meticulous guidance of the laser scanner over the surface of the object being scanned and the segmentation of the cloud data which is collected by the laser scanner. Presently, both obstacles are being manually solved. The guidance of the laser scanning sensor at the correct surface to sensor distance is dependent on operator judgement and the segmentation of the collected data is reliant on the user to manually define surface boundaries on a computer screen. By applying a 2-D CCD camera, both of these problems can be resolved. Depth information on the location of the object surface can be derived from a pair of stereo images from the CCD camera. Using this depth information, the scanner path can be automatically calculated. Segmentation of the object surface can be accomplished by employing a Kohonen neural network into the CCD image. Successful segmentation of the image is conditional on the locations selected to start neural nodes as well as the prevention of the neuron connectors from bleeding onto neighboring patches. Thus the CCD camera allows for the automatic path planning of the laser scanner as well as the segmentation of the surface into patches defined along its natural boundaries.

  13. Land-Based Mobile Laser Scanning Systems: a Review

    NASA Astrophysics Data System (ADS)

    Puente, I.; González-Jorge, H.; Arias, P.; Armesto, J.

    2011-09-01

    Mobile mapping has been using various photogrammetric techniques for many years. In recent years, there has been an increase in the number of mobile mapping systems using laser scanners available in the market, partially because of the improvement in GNSS/INS performance for direct georeferencing. In this article, some of the most important land-based mobile laser scanning (MLS) systems are reviewed. Firstly, the main characteristics of MLS systems vs. airborne (ALS) and terrestrial laser scanning (TLS) systems are compared. Secondly, a short overview of the mobile mapping technology is also provided so that the reader can fully grasp the complexity and operation of these devices. As we put forward in this paper, a comparison of different systems is briefly carried out regarding specifications provided by the manufacturers. Focuses on the current research are also addressed with emphasis on the practical applications of these systems. Most of them have been utilized for data collection on road infrastructures or building façades. This article shows that MLS technology is nowadays well established and proven, since the demand has grown to the point that there are several systems suppliers offering their products to satisfy this particular market.

  14. Ta Keo Temple Reconstruction Based on Terrestrial Laser Scanning Technology

    NASA Astrophysics Data System (ADS)

    Xi, X.; Wang, C.; Wan, Y. P.; Khuon, K. N.

    2015-08-01

    Ta Keo temple is one of the very famous temple complex of Angkor Wat in northwestern Cambodia. It has been suffering massive collapse and other serious damages in recent years. Nowadays, Terrestrial Laser Scanning(TLS) technology is considered as a wellestablished resource for heritage documentation and protection (Lerma et al, 2008; Reshetyuk, 2009). This paper used TLS to reconstruct Ta Keo Temple. Firstly, we acquired 71 scanning stations of points cloud data with high density and high accuracy, and over one thousand images with high spatial resolution about the temple. Secondly, the raw points cloud data were denoised, reduced and managed efficiently, and registrated using an adjusted ICP algorithm. Thirdly, a triangulation method was used to model most objects. At last, we mapped the texture data into the digital model and a 3-D model of Ta Keo with high accuracy was achieved. The authors focus on large object reconstruction by TLS technology, and pay much attention to the scanning design, multi-station data and the whole project's data registration, and texture mapping and so on. The research result will be useful for Ta Keo restoration, reconstruction and protection. Also, it is a good reference source for large complex buildings reconstruction when using terrestrial laser scanning technology.

  15. Categorisation of full waveform data provided by laser scanning devices

    NASA Astrophysics Data System (ADS)

    Ullrich, Andreas; Pfennigbauer, Martin

    2011-11-01

    In 2004, a laser scanner device for commercial airborne laser scanning applications, the RIEGL LMS-Q560, was introduced to the market, making use of a radical alternative approach to the traditional analogue signal detection and processing schemes found in LIDAR instruments so far: digitizing the echo signals received by the instrument for every laser pulse and analysing these echo signals off-line in a so-called full waveform analysis in order to retrieve almost all information contained in the echo signal using transparent algorithms adaptable to specific applications. In the field of laser scanning the somewhat unspecific term "full waveform data" has since been established. We attempt a categorisation of the different types of the full waveform data found in the market. We discuss the challenges in echo digitization and waveform analysis from an instrument designer's point of view and we will address the benefits to be gained by using this technique, especially with respect to the so-called multi-target capability of pulsed time-of-flight LIDAR instruments.

  16. Ligand-Receptor Binding Measured by Laser-Scanning Imaging

    NASA Astrophysics Data System (ADS)

    Zuck, Paul; Lao, Zhege; Skwish, Stephen; Fraser Glickman, J.; Yang, Ke; Burbaum, Jonathan; Inglese, James

    1999-09-01

    This report describes the integration of laser-scanning fluorometric cytometry and nonseparation ligand-binding techniques to provide new assay methods adaptable to miniaturization and high-throughput screening. Receptor-bound, cyanine dye-labeled ligands, [Cy]ligands, were discriminated from those free in solution by measuring the accumulated fluorescence associated with a receptor-containing particle. To illustrate the various binding formats accommodated by this technique, saturation- and competition-binding analyses were performed with [Cy]ligands and their cognate receptors expressed in CHO cells or as fusion proteins coated on polystyrene microspheres. We have successfully applied this technique to the analysis of G protein-coupled receptors, cytokine receptors, and SH2 domains. Multiparameter readouts from ligands labeled separately with Cy5 and Cy5.5 demonstrate the simultaneous analysis of two target receptors in a single well. In addition, laser-scanning cytometry has been used to assay enzymes such as phosphatases and in the development of single-step fluorescent immunoassays.

  17. Automatic Indoor Building Reconstruction from Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Xie, L.; Wang, R.

    2017-09-01

    Indoor reconstruction from point clouds is a hot topic in photogrammetry, computer vision and computer graphics. Reconstructing indoor scene from point clouds is challenging due to complex room floorplan and line-of-sight occlusions. Most of existing methods deal with stationary terrestrial laser scanning point clouds or RGB-D point clouds. In this paper, we propose an automatic method for reconstructing indoor 3D building models from mobile laser scanning point clouds. The method includes 2D floorplan generation, 3D building modeling, door detection and room segmentation. The main idea behind our approach is to separate wall structure into two different types as the inner wall and the outer wall based on the observation of point distribution. Then we utilize a graph cut based optimization method to solve the labeling problem and generate the 2D floorplan based on the optimization result. Subsequently, we leverage an ?-shape based method to detect the doors on the 2D projected point clouds and utilize the floorplan to segment the individual room. The experiments show that this door detection method can achieve a recognition rate at 97% and the room segmentation method can attain the correct segmentation results. We also evaluate the reconstruction accuracy on the synthetic data, which indicates the accuracy of our method is comparable to the state-of-the art.

  18. Wedge-Filtering of Geomorphologic Terrestrial Laser Scan Data

    PubMed Central

    Panholzer, Helmut; Prokop, Alexander

    2013-01-01

    Terrestrial laser scanning is of increasing importance for surveying and hazard assessments. Digital terrain models are generated using the resultant data to analyze surface processes. In order to determine the terrain surface as precisely as possible, it is often necessary to filter out points that do not represent the terrain surface. Examples are vegetation, vehicles, and animals. Filtering in mountainous terrain is more difficult than in other topography types. Here, existing automatic filtering solutions are not acceptable, because they are usually designed for airborne scan data. The present article describes a method specifically suitable for filtering terrestrial laser scanning data. This method is based on the direct line of sight between the scanner and the measured point and the assumption that no other surface point can be located in the area above this connection line. This assumption is only true for terrestrial laser data, but not for airborne data. We present a comparison of the wedge filtering to a modified inverse distance filtering method (IDWMO) filtered point cloud data. Both methods use manually filtered surfaces as reference. The comparison shows that the mean error and root–mean-square-error (RSME) between the results and the manually filtered surface of the two methods are similar. A significantly higher number of points of the terrain surface could be preserved, however, using the wedge-filtering approach. Therefore, we suggest that wedge-filtering should be integrated as a further parameter into already existing filtering processes, but is not suited as a standalone solution so far. PMID:23429548

  19. A semi-automatic 3D laser scan system design

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Pan, Ming; Zhang, Xiangwei

    2009-11-01

    Digital 3D models are now used everywhere, from traditional fields of industrial design, artistic design, to heritage conservation. Although laser scan is very useful to get densely samples of the objects, nowadays, such an instrument is expensive and always need to be connected to a computer with stable power supply, which prevent it from usage for fieldworks. In this paper, a new semi-automatic 3D laser scan method is proposed using two line laser sources. The planes projected from the laser sources are orthogonal, one of which is fixed relative to the camera, and the other can be rotated along a settled axis. Before scanning, the system must be calibrated, from which the parameters of the camera, the position of the fixed laser plane and the settled axis are introduced. In scanning process, the fixed laser plane and the camera form a conventional structured light system, and the 3d positions of the intersection curves of the fixed laser plane with the object can be computed. The other laser plane is rotated manually or mechanically, and its position can be determined from the cross point intersecting with the fixed laser plane on the object, so the coordinates of sweeping points can be obtained. The new system can be used without a computer (The data can be processed later), which make it suitable for fieldworks. A scanning case is given in the end.

  20. Visualization of microcrack anisotropy in granite affected by afault zone, using confocal laser scanning microscope

    SciTech Connect

    Onishi, Celia T.; Shimizu, Ichiko

    2004-01-02

    Brittle deformation in granite can generate a fracture system with different patterns. Detailed fracture analyses at both macroscopic and microscopic scales, together with physical property data from a drill-core, are used to classify the effects of reverse fault deformation in four domains: (1) undeformed granite, (2) fractured granite with cataclastic seams, (3) fractured granite from the damage zone, and (4) foliated cataclasite from the core of the fault. Intact samples from two orthogonal directions, horizontal (H) and vertical (V), from the four domains indicate a developing fracture anisotropy toward the fault, which is highly developed in the damage zone. As a specific illustration of this phenomenon, resin impregnation, using a confocal laser scanning microscope (CLSM) technique is applied to visualize the fracture anisotropy developed in the Toki Granite, Japan. As a result, microcrack networks have been observed to develop in H sections and elongate open cracks in V sections, suggesting that flow pathways can be determined by deformation.

  1. Computer-Assisted Laser Scanning and Video Microscopy for Analysis of Cryptosporidium parvum Oocysts in Soil, Sediment, and Feces

    PubMed Central

    Anguish, L. J.; Ghiorse, W. C.

    1997-01-01

    A computer-assisted laser scanning microscope equipped for confocal laser scanning and color video microscopy was used to examine Cryptosporidium parvum oocysts in two agricultural soils, a barnyard sediment, and calf fecal samples. An agar smear technique was developed for enumerating oocysts in soil and barnyard sediment samples. Enhanced counting efficiency and sensitivity (detection limit, 5.2 x 10(sup2) oocysts(middot)g [dry weight](sup-1)) were achieved by using a semiautomatic counting procedure and confocal laser scanning microscopy to enumerate immunostained oocysts and fragments of oocysts in the barnyard sediment. An agarose-acridine orange mounting procedure was developed for high-resolution confocal optical sectioning of oocysts in soil. Stereo images of serial optical sections revealed the three-dimensional spatial relationships between immunostained oocysts and the acridine orange-stained soil matrix material. In these hydrated, pyrophosphate-dispersed soil preparations, oocysts were not found to be attached to soil particles. A fluorogenic dye permeability assay for oocyst viability (A. T. Campbell, L. J. Robertson, and H. V. Smith, Appl. Environ. Microbiol. 58:3488-3493, 1992) was modified by adding an immunostaining step after application of the fluorogenic dyes propidium iodide and 4(prm1),6-diamidino-2-phenylindole. Comparison of conventional color epifluorescence and differential interference contrast images on one video monitor with comparable black-and-white laser-scanned confocal images on a second monitor allowed for efficient location and interpretation of fluorescently stained oocysts in the soil matrix. This multi-imaging procedure facilitated the interpretation of the viability assay results by overcoming the uncertainties caused by matrix interference and background fluorescence. PMID:16535523

  2. Laser-scanning photoacoustic microscopy with ultrasonic phased array transducer.

    PubMed

    Zheng, Fan; Zhang, Xiangyang; Chiu, Chi Tat; Zhou, Bill L; Shung, K Kirk; Zhang, Hao F; Jiao, Shuliang

    2012-11-01

    In this paper, we report our latest progress on proving the concept that ultrasonic phased array can improve the detection sensitivity and field of view (FOV) in laser-scanning photoacoustic microscopy (LS-PAM). A LS-PAM system with a one-dimensional (1D) ultrasonic phased array was built for the experiments. The 1D phased array transducer consists of 64 active elements with an overall active dimension of 3.2 mm × 2 mm. The system was tested on imaging phantom and mouse ear in vivo. Experiments showed a 15 dB increase of the signal-to-noise ratio (SNR) when beamforming was employed compared to the images acquired with each single element. The experimental results demonstrated that ultrasonic phased array can be a better candidate for LS-PAM in high sensitivity applications like ophthalmic imaging.

  3. Quantitative single-molecule imaging by confocal laser scanning microscopy.

    PubMed

    Vukojevic, Vladana; Heidkamp, Marcus; Ming, Yu; Johansson, Björn; Terenius, Lars; Rigler, Rudolf

    2008-11-25

    A new approach to quantitative single-molecule imaging by confocal laser scanning microscopy (CLSM) is presented. It relies on fluorescence intensity distribution to analyze the molecular occurrence statistics captured by digital imaging and enables direct determination of the number of fluorescent molecules and their diffusion rates without resorting to temporal or spatial autocorrelation analyses. Digital images of fluorescent molecules were recorded by using fast scanning and avalanche photodiode detectors. In this way the signal-to-background ratio was significantly improved, enabling direct quantitative imaging by CLSM. The potential of the proposed approach is demonstrated by using standard solutions of fluorescent dyes, fluorescently labeled DNA molecules, quantum dots, and the Enhanced Green Fluorescent Protein in solution and in live cells. The method was verified by using fluorescence correlation spectroscopy. The relevance for biological applications, in particular, for live cell imaging, is discussed.

  4. Classification of Mobile Laser Scanning Point Clouds from Height Features

    NASA Astrophysics Data System (ADS)

    Zheng, M.; Lemmens, M.; van Oosterom, P.

    2017-09-01

    The demand for 3D maps of cities and road networks is steadily growing and mobile laser scanning (MLS) systems are often the preferred geo-data acquisition method for capturing such scenes. Because MLS systems are mounted on cars or vans they can acquire billions of points of road scenes within a few hours of survey. Manual processing of point clouds is labour intensive and thus time consuming and expensive. Hence, the need for rapid and automated methods for 3D mapping of dense point clouds is growing exponentially. The last five years the research on automated 3D mapping of MLS data has tremendously intensified. In this paper, we present our work on automated classification of MLS point clouds. In the present stage of the research we exploited three features - two height components and one reflectance value, and achieved an overall accuracy of 73 %, which is really encouraging for further refining our approach.

  5. Adaptive optics for confocal laser scanning microscopy with adjustable pinhole

    NASA Astrophysics Data System (ADS)

    Yoo, Han Woong; van Royen, Martin E.; van Cappellen, Wiggert A.; Houtsmuller, Adriaan B.; Verhaegen, Michel; Schitter, Georg

    2016-04-01

    The pinhole plays an important role in confocal laser scanning microscopy (CLSM) for adaptive optics (AO) as well as in imaging, where the size of the pinhole denotes a trade-off between out-of-focus rejection and wavefront distortion. This contribution proposes an AO system for a commercial CLSM with an adjustable square pinhole to cope with such a trade-off. The proposed adjustable pinhole enables to calibrate the AO system and to evaluate the imaging performance. Experimental results with fluorescence beads on the coverslip and at a depth of 40 μm in the human hepatocellular carcinoma cell spheroid demonstrate that the proposed AO system can improve the image quality by the proposed calibration method. The proposed pinhole intensity ratio also indicates the image improvement by the AO correction in intensity as well as resolution.

  6. Road Orthophoto/dtm Generation from Mobile Laser Scanning

    NASA Astrophysics Data System (ADS)

    Vallet, B.; Papelard, J.-P.

    2015-08-01

    This paper proposes a pipeline to produce road orthophoto and DTM from Mobile Laser Scanning (MLS). For the ortho, modern laser scanners provide a reflectance information allowing for high quality grayscale images, at a much finer resolution than aerial photography can offer. For DTM, MLS offers a much higher accuracy and density than aerial products. This increased precision and resolution leverages new applications for both ortho and DEM. The first task is to filter ground vs non ground, then an interpolation is conducted to build image tiles from the filtered points. Finally, multiple layers are registered and blended to allow for seamless fusion. Our proposed approach achieves high quality products and scaling up is demonstrated.

  7. 2-photon laser scanning microscopy on native human cartilage

    NASA Astrophysics Data System (ADS)

    Martini, Joerg; Toensing, Katja; Dickob, Michael; Anselmetti, Dario

    2005-08-01

    Native hyaline cartilage from a human knee joint was directly investigated with laser scanning microscopy via 2-photon autofluorescence excitation with no additional staining or labelling protocols in a nondestructive and sterile manner. Using a femtosecond, near-infrared (NIR) Ti:Sa laser for 2-photon excitation and a dedicated NIR long distance objective, autofluorescence imaging and measurements of the extracellular matrix (ECM) tissue with incorporated chondrocytes were possible with a penetration depth of up to 460 μm inside the sample. Via spectral autofluorescence separation these experiments allowed the discrimination of chondrocytes from the ECM and therefore an estimate of chondrocytic cell density within the cartilage tissue to approximately 0.2-2•107cm3. Furthermore, a comparison of the relative autofluorescence signals between nonarthritic and arthritic cartilage tissue exhibited distinct differences in tissue morphology. As these morphological findings are in keeping with the macroscopic diagnosis, our measurement has the potential of being used in future diagnostic applications.

  8. Point-to-plane registration of terrestrial laser scans

    NASA Astrophysics Data System (ADS)

    Grant, Darion; Bethel, James; Crawford, Melba

    2012-08-01

    The registration of pairs of Terrestrial Laser Scanning data (TLS) is an integral precursor to 3D data analysis. Of specific interest in this research work is the class of approaches that is considered to be fine registration and which does not require any targets or tie points. This paper presents a pairwise fine registration approach called P2P that is formulated using the General Least Squares adjustment model. Given some initial registration parameters, the proposed P2P approach utilizes the scanned points and estimated planar features of both scans, along with their stochastic properties. These quantities are used to determine the optimum registration parameters in the least squares sense. The proposed P2P approach was tested on both simulated and real TLS data, and experimental results showed it to be four times more accurate than the registration approach of Chen and Medioni (1991).

  9. Non-Contact Measurement Using A Laser Scanning Probe

    NASA Astrophysics Data System (ADS)

    Modjarrad, Amir

    1989-03-01

    Traditional high accuracy touch-trigger probing can now be complemented by high speed, non-contact, profile scanning to give another "dimension" to the three-dimensional Co-ordinate Measuring Machines (CMMs). Some of the features of a specially developed laser scanning probe together with the trade-offs involved in the design of inspection systems that use triangulation are examined. Applications of such a laser probe on CMMs are numerous since high speed scanning allows inspection of many different components and surfaces. For example, car body panels, tyre moulds, aircraft wing skins, turbine blades, wax and clay models, plastics, etc. Other applications include in-process surveillance in manufacturing and food processing, robotics vision and many others. Some of these applications are discussed and practical examples, case studies and experimental results are given with particular reference to use on CMMs. In conclusion, future developments and market trends in high speed non-contact measurement are discussed.

  10. Laser-scanning photoacoustic microscopy with ultrasonic phased array transducer

    PubMed Central

    Zheng, Fan; Zhang, Xiangyang; Chiu, Chi Tat; Zhou, Bill L.; Shung, K. Kirk; Zhang, Hao F.; Jiao, Shuliang

    2012-01-01

    In this paper, we report our latest progress on proving the concept that ultrasonic phased array can improve the detection sensitivity and field of view (FOV) in laser-scanning photoacoustic microscopy (LS-PAM). A LS-PAM system with a one-dimensional (1D) ultrasonic phased array was built for the experiments. The 1D phased array transducer consists of 64 active elements with an overall active dimension of 3.2 mm × 2 mm. The system was tested on imaging phantom and mouse ear in vivo. Experiments showed a 15 dB increase of the signal-to-noise ratio (SNR) when beamforming was employed compared to the images acquired with each single element. The experimental results demonstrated that ultrasonic phased array can be a better candidate for LS-PAM in high sensitivity applications like ophthalmic imaging. PMID:23162708

  11. Airborne Laser Scanning and Image Processing Techniques for Archaeological Prospection

    NASA Astrophysics Data System (ADS)

    Faltýnová, M.; Nový, P.

    2014-06-01

    Aerial photography was, for decades, an invaluable tool for archaeological prospection, in spite of the limitation of this method to deforested areas. The airborne laser scanning (ALS) method can be nowadays used to map complex areas and suitable complement earlier findings. This article describes visualization and image processing methods that can be applied on digital terrain models (DTMs) to highlight objects hidden in the landscape. Thanks to the analysis of visualized DTM it is possible to understand the landscape evolution including the differentiation between natural processes and human interventions. Different visualization methods were applied on a case study area. A system of parallel tracks hidden in a forest and its surroundings - part of old route called "Devil's Furrow" near the town of Sázava was chosen. The whole area around well known part of Devil's Furrow has not been prospected systematically yet. The data from the airborne laser scanning acquired by the Czech Office for Surveying, Mapping and Cadastre was used. The average density of the point cloud was approximately 1 point/m2 The goal of the project was to visualize the utmost smallest terrain discontinuities, e.g. tracks and erosion furrows, which some were not wholly preserved. Generally we were interested in objects that are clearly not visible in DTMs displayed in the form of shaded relief. Some of the typical visualization methods were tested (shaded relief, aspect and slope image). To get better results we applied image-processing methods that were successfully used on aerial photographs or hyperspectral images in the past. The usage of different visualization techniques on one site allowed us to verify the natural character of the southern part of Devil's Furrow and find formations up to now hidden in the forests.

  12. Test field for airborne laser scanning in Finland

    NASA Astrophysics Data System (ADS)

    Ahokas, E.; Kaartinen, H.; Kukko, A.; Litkey, P.

    2014-11-01

    Airborne laser scanning (ALS) is a widely spread operational measurement tool for obtaining 3D coordinates of the ground surface. There is a need for calibrating the ALS system and a test field for ALS was established at the end of 2013. The test field is situated in the city of Lahti, about 100 km to the north of Helsinki. The size of the area is approximately 3.5 km × 3.2 km. Reference data was collected with a mobile laser scanning (MLS) system assembled on a car roof. Some streets were measured both ways and most of them in one driving direction only. The MLS system of the Finnish Geodetic Institute (FGI) consists of a navigation system (NovAtel SPAN GNSS-IMU) and a laser scanner (FARO Focus3D 120). In addition to the MLS measurements more than 800 reference points were measured using a Trimble R8 VRS-GNSS system. Reference points are along the streets, on parking lots, and white pedestrian crossing line corners which can be used as reference targets. The National Land Survey of Finland has already used this test field this spring for calibrating their Leica ALS-70 scanner. Especially it was easier to determine the encoder scale factor parameter using this test field. Accuracy analysis of the MLS points showed that the point height RMSE is 2.8 cm and standard deviation is 2.6 cm. Our purpose is to measure both more MLS data and more reference points in the test field area to get a better spatial coverage. Calibration flight heights are planned to be 1000 m and 2500 m above ground level. A cross pattern, southwest-northeast and northwest-southeast, will be flown both in opposite directions.

  13. Urban Tree Classification Using Full-Waveform Airborne Laser Scanning

    NASA Astrophysics Data System (ADS)

    Koma, Zs.; Koenig, K.; Höfle, B.

    2016-06-01

    Vegetation mapping in urban environments plays an important role in biological research and urban management. Airborne laser scanning provides detailed 3D geodata, which allows to classify single trees into different taxa. Until now, research dealing with tree classification focused on forest environments. This study investigates the object-based classification of urban trees at taxonomic family level, using full-waveform airborne laser scanning data captured in the city centre of Vienna (Austria). The data set is characterised by a variety of taxa, including deciduous trees (beeches, mallows, plane trees and soapberries) and the coniferous pine species. A workflow for tree object classification is presented using geometric and radiometric features. The derived features are related to point density, crown shape and radiometric characteristics. For the derivation of crown features, a prior detection of the crown base is performed. The effects of interfering objects (e.g. fences and cars which are typical in urban areas) on the feature characteristics and the subsequent classification accuracy are investigated. The applicability of the features is evaluated by Random Forest classification and exploratory analysis. The most reliable classification is achieved by using the combination of geometric and radiometric features, resulting in 87.5% overall accuracy. By using radiometric features only, a reliable classification with accuracy of 86.3% can be achieved. The influence of interfering objects on feature characteristics is identified, in particular for the radiometric features. The results indicate the potential of using radiometric features in urban tree classification and show its limitations due to anthropogenic influences at the same time.

  14. Ocular mucin visualization by confocal laser scanning microscopy.

    PubMed

    Peral, Assumpta; Pintor, Jesús

    2008-05-01

    To describe a new method of visualizing human conjunctiva goblet cell mucin secretion by using a combination of impression cytology and laser scanning microscopy. By assembling a Z-stack of confocal microscopy images taken from human impression cytology samples, we obtained 3-dimensional information about the release and spread of goblet cell secretions above the conjunctival surface. After reconstruction and rendering of these images, analysis of the shape and spreading characteristics of the mucins permitted definition of the following parameters related to goblet cell secretion: mucin cloud height as the height of the top of the cloudlike mucin structure visible above the goblet cell opening and spread mucin thickness, which is the thickness of the mucin layer distributed over the surface of the conjunctiva. Several impression cytology samples of control and muco-deficient patients have been analyzed through the confocal laser scanning technique, and significant differences between these groups were found. Mucin cloud height and spread mucin thickness values for controls were 8.81 +/- 4.00 and 2.77 +/- 1.00 microm, respectively (n = 25). These values decreased by approximately 70% and 40%, respectively, for moderately mucodeficient subjects and by 84% and 48% for those with severe mucodeficiency. Classifying those individuals having mucin-related pathology may thus be possible on the basis of application of these techniques. In summary, we present a method of objectively identifying those individuals with problems associated with either a lack of mucins or a reduction in the distribution of these proteins over the ocular surface.

  15. Cell depth imaging by point laser scanning fluorescence microscopy with an optical disk pickup head

    NASA Astrophysics Data System (ADS)

    Tsai, Rung-Ywan; Chen, Jung-Po; Lee, Yuan-Chin; Chiang, Hung-Chih; Cheng, Chih-Ming; Huang, Chun-Chieh; Huang, Tai-Ting; Cheng, Chung-Ta; Tiao, Golden

    2015-09-01

    A compact, cost-effective, and position-addressable digital laser scanning microscopy (DLSM) instrument is made using a commercially available Blu-ray disc read-only memory (BD-ROM) pickup head. Fluorescent cell images captured by DLSM have resolutions of 0.38 µm. Because of the position-addressable function, multispectral fluorescence cell images are captured using the same sample slide with different excitation laser sources. Specially designed objective lenses with the same working distance as the image-capturing beam are used for the different excitation laser sources. By accurately controlling the tilting angles of the sample slide or by moving the collimator lens of the image-capturing beam, the fluorescence cell images along different depth positions of the sample are obtained. Thus, z-section images with micrometer-depth resolutions are achievable.

  16. A line segment based registration method for Terrestrial Laser Scanning point cloud data

    NASA Astrophysics Data System (ADS)

    Cheng, Jun; Cheng, Ming; Lin, Yangbin; Wang, Cheng

    2016-03-01

    This paper proposed a 3d line segment based registration method for terrestrial laser scanning (TLS) data. The 3D line segment is adopted to describe the point cloud data and reduce geometric complexity. After that, we introduce a framework for registration. We demonstrate the accuracy of our method for rigid transformations in the presence of terrestrial laser scanning point cloud.

  17. Estimation of big sagebrush leaf area index with terrestrial laser scanning

    USDA-ARS?s Scientific Manuscript database

    A remote-sensing technique is need to bridge the gap between airborne laser scanning (ALS) and ground-based field techniques for accurately assessing leaf area index (LAI) in sparsely vegetated landscapes like sagebrush steppe. Terrestrial laser scanning (TLS) was used to measure structural variable...

  18. Comparison of micro-computed tomography and laser scanning for reverse engineering orthopaedic component geometries.

    PubMed

    Teeter, Matthew G; Brophy, Paul; Naudie, Douglas D R; Holdsworth, David W

    2012-03-01

    A significant amount of research has been undertaken to evaluate the function of implanted joint replacement components. Many of these studies require the acquisition of an accurate three-dimensional geometric model of the various implant components, using methods such as micro-computed tomography or laser scanning. The purpose of this study was to compare micro-computed tomography and laser scanning for obtaining component geometries. Five never-implanted polyethylene tibial inserts of one type were scanned with both micro-computed tomography and laser scanning to determine the repeatability of each method and measured for any deviations between the geometries acquired from the different scans. Overall, good agreement was found between the micro-computed tomography and laser scans, to within 71 microm on average. Micro-computed tomography was found to have superior repeatability to laser scanning (mean of 1 microm for micro-computed tomography versus 19 microm for laser scans). Micro-computed tomography may be preferred for visualizing small surface features, whereas laser scanning may be preferred for acquiring the geometry of metal objects to avoid computed tomography artifacts. In conclusion, the choice of micro-computed tomography versus laser scanning for acquiring orthopaedic component geometries will likely involve considerations of user preference, the specific application the scan will be used for, and the availability of each system.

  19. The potential of UAV laser scanning in forest inventories

    NASA Astrophysics Data System (ADS)

    Wang, Di; Hollaus, Markus; Pfeifer, Norbert; Bronner, Günther

    2017-04-01

    Forest management, harvest operation, ecological conservation and relevant decision making need information from inventories. Conventionally, forest inventories were carried out mainly from field measurements with simple tools, and from field samples. Several vital tree attributes such as diameter at breast height (DBH), tree height, and species were collected at individual tree level. Various other attributes then can be inferred. For example, stem curve (i.e., taper function) can be interpolated by mathematical functions. The relation of different components of trees is often estimated by allometric functions based on DBH, tree height or other parameters of interest. In addition, these attributes are often aggregated to plot-level. For deriving taper functions for individual plots the required field measurements would be too expensive and therefore, the available taper functions are based on few sample trees. Recent advancements of remote sensing techniques, especially terrestrial laser scanning (TLS) showed promising potential in forest inventories. It acquires millions of 3D points, which enables fast determination of forest attributes in an automatic manner. Some additional attributes that cannot be directly measured in traditional field inventories such as stem curve and volume, even ecologically related parameters such as leaf area index (LAI) can be estimated with high precision. The deficiencies of the employment of TLS in forests include limited terrain accessibility, area coverage, and visibility in top canopy layer. On the other hand, the next geospatial frontier, UAV-borne Laser Scanning (ULS) is emerging as a candidate for forest inventories. The high density and accuracy of ULS data enable the modeling of individual tree with fine details up to branch level. In addition to its plot or transect level coverage, it achieves a high level of completeness with respect to the top canopy layer. Therefore, it generates a high potential especially in

  20. New potentials of laser scanning in landslide hazard assessments

    NASA Astrophysics Data System (ADS)

    Bell, Rainer; Petschko, Helene

    2010-05-01

    The increasing availability of airborne (ALS) and terrestrial (TLS) laser scanning data in geomorphological studies has started to lead to a "revolution in geomorphology". Laser scanning data offers new details not only on vegetation surface but also on earth surface and subsequently provides new insights into geomorphological forms and respective past and present processes which created these forms. Within this study, mainly the potential of ALS in regional landslide hazard assessments is addressed. The starting point for each regional landslide hazard assessment should be an excellent landslide inventory, which often is not available at the beginning of such an assessment. Usually, landslide inventories were set up by e.g. field mapping, digitizing of landslide information from geological or geomorphological maps or interpretation of aerial photos. High resolution digital terrain models (DTM) derived from ALS provide new and excellent data sources for more efficiently mapping landslides. Very accurate landslide inventories can be mapped regarding especially the location and completeness of landslides by analysing ALS DTM's. However, there are quite some limitations involved, since past landslides might be invisible in the DTM due to natural erosion or human impact. Other landslides might be too young to be captured in the DTM. New challenges arise if the study area gets too large. Quite often, resources on time and manpower are limited so that not all landslides can be mapped. Thus, new strategies for efficient landslide mapping and preparation of sufficient complete inventories must be developed beside activities to automate landslide mapping from DTM's. Since landslide structures are modified over time, relative age might be estimated from the freshness of the structures itself. However, these are strongly dependent on the type of land use. Whereas they are preserved under forest, they change more rapidly e.g. in agricultural areas. The challenge is, if the age

  1. Forest structure analysis combining laser scanning with digital airborne photogrammetry

    NASA Astrophysics Data System (ADS)

    Lissak, Candide; Onda, Yuichi; Kato, Hiroaki

    2017-04-01

    The interest of Light Detection and Ranging (LiDAR) for vegetation structure analysis has been demonstrated in several research context. Indeed, airborne or ground Lidar surveys can provide detailed three-dimensional data of the forest structure from understorey forest to the canopy. To characterize at different timescale the vegetation components in dense cedar forests we can combine several sources point clouds from Lidar survey and photogrammetry data. For our study, Terrestrial Laser Scanning (TLS-Leica ScanStation C10 processed with Cyclone software) have been lead in three forest areas (≈ 200m2 each zone) mainly composed of japanese cedar (Japonica cryptomeria), in the region of Fukushima (Japan). The study areas are characterized by various vegetation densities. For the 3 areas, Terrestrial laser scanning has been performed from several location points and several heights. Various floors shootings (ground, 4m, 6m and 18m high) were able with the use of a several meters high tower implanted to study the canopy evolution following the Fukushima Daiishi nuclear power plant accident. The combination of all scanners provides a very dense 3D point cloud of ground and canopy structure (average 300 000 000 points). For the Tochigi forest area, a first test of a low-cost Unmanned Aerial Vehicle (UAV) photogrammetry has been lead and calibrated by ground GPS measurements to determine the coordinates of points. TLS combined to UAV photogrammetry make it possible to obtain information on vertical and horizontal structure of the Tochigi forest. This combination of technologies will allow the forest structure mapping, morphometry analysis and the assessment of biomass volume evolution from multi-temporal point clouds. In our research, we used a low-cost UAV 3 Advanced (200 m2 cover, 1300 pictures...). Data processing were performed using PotoScan Pro software to obtain a very dense point clouds to combine to TLS data set. This low-cost UAV photogrammetry data has been

  2. Three-dimensional imaging of interphase cell nuclei with laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Boecker, Wilfried; Radtke, Thomas; Streffer, Christian

    1998-10-01

    During the past decade 3D image processing has become an important key component in biological research mainly due to two different developments. The first is based on an optical instrument, the so-called confocal laser scanning microscope, allowing optical sectioning of the biological specimen. The second is a biological preparatory method, the so-called FISH-technique (Fluorescence-In-Situ- Hybridization), allowing labeling of certain cellular and sub-cellular compartments with highly specific fluorescent dyes. Both methods make it possible to investigate the 3D biological framework within cells and nuclei. Image acquisition with confocal laser scanning microscopy must deal with different limits of resolution along and across the optical axis. Although lateral resolution is about 0.7 times better than in non-confocal arrangements, axial resolution is more than 3 - 4 times poorer than that of the lateral (depending on the pinhole size). For 3D reconstruction it is desirable to improve axial resolution in order to provide nearly identical image information across the 3D specimen space. This presentation will give an overview of some of the most popular restoration and deblurring algorithms used in 3D image microscopy. After 3D image restoration, segmentation of certain details of the cell structure is usually the next step in image processing. We compared two different kinds of algorithms for segmentation of chromosome territories in interphase cell nuclei. One is based on Mathematical Morphology, the other on Split & Merge methods. The segmented image regions provided the basis for chromosome domain reconstruction as well as for regional localization for subsequent quantitative measurements. As a result the chromatin density within certain chromosome domains as well as some terminal DNA sequences (telomere signals) could be measured.

  3. Laser Scanning in Engineering Surveying: Methods of Measurement and Modeling of Structures

    NASA Astrophysics Data System (ADS)

    Lenda, Grzegorz; Uznański, Andrzej; Strach, Michał; Lewińska, Paulina

    2016-06-01

    The study is devoted to the uses of laser scanning in the field of engineering surveying. It is currently one of the main trends of research which is developed at the Department of Engineering Surveying and Civil Engineering at the Faculty of Mining Surveying and Environmental Engineering of AGH University of Science and Technology in Krakow. They mainly relate to the issues associated with tower and shell structures, infrastructure of rail routes, or development of digital elevation models for a wide range of applications. These issues often require the use of a variety of scanning techniques (stationary, mobile), but the differences also regard the planning of measurement stations and methods of merging point clouds. Significant differences appear during the analysis of point clouds, especially when modeling objects. Analysis of the selected parameters is already possible basing on ad hoc measurements carried out on a point cloud. However, only the construction of three-dimensional models provides complete information about the shape of structures, allows to perform the analysis in any place and reduces the amount of the stored data. Some structures can be modeled in the form of simple axes, sections, or solids, for others it becomes necessary to create sophisticated models of surfaces, depicting local deformations. The examples selected for the study allow to assess the scope of measurement and office work for a variety of uses related to the issue set forth in the title of this study. Additionally, the latest, forward-looking technology was presented - laser scanning performed from Unmanned Aerial Vehicles (drones). Currently, it is basically in the prototype phase, but it might be expected to make a significant progress in numerous applications in the field of engineering surveying.

  4. Multispectral Analysis of Indigenous Rock Art Using Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Skoog, B.; Helmholz, P.; Belton, D.

    2016-06-01

    Multispectral analysis is a widely used technique in the photogrammetric and remote sensing industry. The use of Terrestrial Laser Scanning (TLS) in combination with imagery is becoming increasingly common, with its applications spreading to a wider range of fields. Both systems benefit from being a non-contact technique that can be used to accurately capture data regarding the target surface. Although multispectral analysis is actively performed within the spatial sciences field, its extent of application within an archaeological context has been limited. This study effectively aims to apply the multispectral techniques commonly used, to a remote Indigenous site that contains an extensive gallery of aging rock art. The ultimate goal for this research is the development of a systematic procedure that could be applied to numerous similar sites for the purpose of heritage preservation and research. The study consisted of extensive data capture of the rock art gallery using two different TLS systems and a digital SLR camera. The data was combined into a common 2D reference frame that allowed for standard image processing to be applied. An unsupervised k-means classifier was applied to the multiband images to detect the different types of rock art present. The result was unsatisfactory as the subsequent classification accuracy was relatively low. The procedure and technique does however show potential and further testing with different classification algorithms could possibly improve the result significantly.

  5. Digital image enhancement for in vivo laser scanning microscopy.

    PubMed

    Gruber, Martin J; Wackernagel, Alexandra; Richtig, Erika; Koller, Silvia; Kerl, Helmut; Smolle, Josef

    2005-11-01

    In vivo confocal laser scanning microscopy (CLSM) is a new method that provides skin images in horizontal plane at a level of resolution that allows to view microanatomic structures. This study examines whether certain digital image-processing steps can increase the visibility of various structures in CLSM. Fifty images were taken from normal skin of 25 probands, and 39 image enhancement procedures were created. Eight procedures that seemed to provide some quality enhancement were deliberately selected for further evaluation. Subsequently, a collection of random pairs of the original image and an image submitted to any of the eight selected procedures was rated by five independent observers. In three of the eight procedures tested, the modified image was significantly preferred to the original image (chi2-test,: P< or =0.001). In particular, smoothing, shading correction, delineate and grey-level normalization in various combinations were helpful in showing the characteristic honeycomb pattern, pigmented basal cell layer, cell borders and the nuclei more clearly. Digital image processing may help to increase visibility of in vivo CLSM images.

  6. Multispectral Airborne Laser Scanning for Automated Map Updating

    NASA Astrophysics Data System (ADS)

    Matikainen, Leena; Hyyppä, Juha; Litkey, Paula

    2016-06-01

    During the last 20 years, airborne laser scanning (ALS), often combined with multispectral information from aerial images, has shown its high feasibility for automated mapping processes. Recently, the first multispectral airborne laser scanners have been launched, and multispectral information is for the first time directly available for 3D ALS point clouds. This article discusses the potential of this new single-sensor technology in map updating, especially in automated object detection and change detection. For our study, Optech Titan multispectral ALS data over a suburban area in Finland were acquired. Results from a random forests analysis suggest that the multispectral intensity information is useful for land cover classification, also when considering ground surface objects and classes, such as roads. An out-of-bag estimate for classification error was about 3% for separating classes asphalt, gravel, rocky areas and low vegetation from each other. For buildings and trees, it was under 1%. According to feature importance analyses, multispectral features based on several channels were more useful that those based on one channel. Automatic change detection utilizing the new multispectral ALS data, an old digital surface model (DSM) and old building vectors was also demonstrated. Overall, our first analyses suggest that the new data are very promising for further increasing the automation level in mapping. The multispectral ALS technology is independent of external illumination conditions, and intensity images produced from the data do not include shadows. These are significant advantages when the development of automated classification and change detection procedures is considered.

  7. Footprint Map Partitioning Using Airborne Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Xiong, B.; Oude Elberink, S.; Vosselman, G.

    2016-06-01

    Nowadays many cities and countries are creating their 3D building models for a better daily management and smarter decision making. The newly created 3D models are required to be consistent with existing 2D footprint maps. Thereby the 2D maps are usually combined with height data for the task of 3D reconstruction. Many buildings are often composed by parts that are discontinuous over height. Building parts can be reconstructed independently and combined into a complete building. Therefore, most of the state-of-the-art work on 3D building reconstruction first decomposes a footprint map into parts. However, those works usually change the footprint maps for easier partitioning and cannot detect building parts that are fully inside the footprint polygon. In order to solve those problems, we introduce two methodologies, one more dependent on height data, and the other one more dependent on footprints. We also experimentally evaluate the two methodologies and compare their advantages and disadvantages. The experiments use Airborne Laser Scanning (ALS) data and two vector maps, one with 1:10,000 scale and another one with 1:500 scale.

  8. Intracellular phthalocyanine localization: confocal laser scanning microscopy studies

    NASA Astrophysics Data System (ADS)

    Chernyaeva, Elena B.; Greve, Jan; de Grooth, Bart G.; Van Leeuwen, A. G.

    1994-02-01

    Phthalocyanines (Pc) are promising second-generation photosensitizers for the photodynamic therapy (PDT) of cancer. We report on the tetrasulfonated aluminum phthalocyanine (AlPcS4) localization in cultured Chinese hamster lung cells studied by means of confocal laser scanning microscopy (CLSM). In these cells AlPcS4 was found in granules surrounding Golgi apparatus and in the peripheral cytoplasmic region. Peripheral Pc-containing granules partially coincided with the acidic cellular compartments. The effect of irradiation with light on Pc intracellular distribution was also studied. In the Pc-free medium disruption of some Pc- containing granules was observed followed by appearance of Pc fluorescence in the cell plasma membrane, the nuclear envelope, and the near-nuclear region. When cells were irradiated in the presence of Pc in external medium a drastic increase of membrane permeability to Pc was observed, followed by Pc binding the cell plasma membrane, nuclear envelope, and some structures in the cytoplasm. Diffusive Pc fluorescence in the nucleus was also observed. The implication of observed Pc redistribution caused by irradiation with light for the PDT protocol is discussed.

  9. Pedestrian Detection by Laser Scanning and Depth Imagery

    NASA Astrophysics Data System (ADS)

    Barsi, A.; Lovas, T.; Molnar, B.; Somogyi, A.; Igazvolgyi, Z.

    2016-06-01

    Pedestrian flow is much less regulated and controlled compared to vehicle traffic. Estimating flow parameters would support many safety, security or commercial applications. Current paper discusses a method that enables acquiring information on pedestrian movements without disturbing and changing their motion. Profile laser scanner and depth camera have been applied to capture the geometry of the moving people as time series. Procedures have been developed to derive complex flow parameters, such as count, volume, walking direction and velocity from laser scanned point clouds. Since no images are captured from the faces of pedestrians, no privacy issues raised. The paper includes accuracy analysis of the estimated parameters based on video footage as reference. Due to the dense point clouds, detailed geometry analysis has been conducted to obtain the height and shoulder width of pedestrians and to detect whether luggage has been carried or not. The derived parameters support safety (e.g. detecting critical pedestrian density in mass events), security (e.g. detecting prohibited baggage in endangered areas) and commercial applications (e.g. counting pedestrians at all entrances/exits of a shopping mall).

  10. Quantification of telomere length by FISH and laser scanning cytometry

    NASA Astrophysics Data System (ADS)

    Mahoney, John E.; Sahin, Ergun; Jaskelioff, Mariela; Chin, Lynda; DePinho, Ronald A.; Protopopov, Alexei I.

    2008-02-01

    Telomeres play a critical role in the maintenance of chromosomal stability. Telomere erosion, coupled with loss of DNA damage checkpoint function, results in genomic instability that promotes the development of cancer. The critical role of telomere dynamics in cancer has motivated the development of technologies designed to monitor telomere reserves in a highly quantitative and high-throughput manner in humans and model organisms. To this end, we have adapted and modified two established technologies, telomere-FISH and laser scanning cytometry. Specifically, we have produced a number of enhancements to the iCys LSC (CompuCyte) package including software updates, use of 60X dry objectives, and increased spatial resolution by 0.2 um size of stage steps. In addition, the 633 nm HeNe laser was replaced with a 532 nm green diode laser to better match the viewing options. Utilization of telomere-deficient mouse cells with short dysfunctional telomeres and matched telomerase reconstituted cultures demonstrated significantly higher mean integral specific fluorescence values for mTR transfectants relative to empty vector controls: 4.485M vs. 1.362M (p<0.0001). Histograms of average telomere intensities for individual cells were obtained and demonstrated intercellular heterogeneity in telomere lengths. The validation of the approach derives from a strong correlation between iCys LSC values and Southern blotting. This validated method greatly increases our experimental throughput and objectivity.

  11. Applications of confocal laser scanning microscopy to dental bonding.

    PubMed

    Pioch, T; Stotz, S; Staehle, H J; Duschner, H

    1997-11-01

    The introduction of confocal laser scanning microscopy (CLSM) has provided a valuable new technique for the visualization of bonding structures such as a hybrid layer in dentin (Watson, 1989, 1991). In the case of seven commercially-available dentin bonding systems, it could be demonstrated that the CLSM renders considerably more detailed information than the SEM because of its non-destructive nature and because of the possibility of a distinction between components of bonding agents. With most of the bonding systems, measurements of the thickness of the hybrid layer could be carried out when the primer component was labeled with rhodamine B. It was found that this thickness is significantly increased by increases in etching time and only slightly decreased by increases in the drying time of the dentin and of the primer. When rhodamine B was used for dye penetration tests on four different dentin bonding systems, a leakage within the demineralized zone in the dentin was found in each of the specimens. This structure appears similar to that which Sano et al. (1995) called "nanoleakage". The amount of nanoleakage could not be measured by this method. In the case of enamel or ceramic bonding, a penetration zone was found which corresponded to the etching patterns found in enamel and ceramics, respectively. We conclude that CLSM can offer a wealth of new information about bonding morphology and, therefore, should be used in addition to conventional methods so that the maximum information can be obtained.

  12. Use of laser scanning cytometry to study tumor microenvironment.

    PubMed

    Mocellin, S; Wang, E; Panelli, M; Rossi, C R; Marincola, F M

    2003-04-01

    The study of phenomena occurring in the tumor microenvironment is a challenging task because of technical difficulties, particularly when dealing with hypocellular specimens. Laser scanning cytometry (LSC) is a new laboratory technology that has been recently introduced to overcome the limitations of other traditional technologies. By combining the properties and the advantages of flow cytometry (FC) and immunohistochemistry (IHC), LSC allows the investigator to obtain objective information on DNA content, protein expression and cellular localization is combination with morphological features. It has been already shown that LSC results are reliable compared to more traditional technologies, and its implementation in the clinical routine is under way. Its use in oncology, which is rapidly expanding, spans from apoptosis analysis to DNA content quantitation and tumor cell phenotyping. Here we describe the technology underlying this novel fluorescence-based device, review its use in oncology by dissecting the phenomena occurring in the tumor microenvironment and propose its application for the immunological follow-up of malignant lesions undergoing immunotherapeutic manipulation.

  13. Hierarchical extraction of urban objects from mobile laser scanning data

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Dong, Zhen; Zhao, Gang; Dai, Wenxia

    2015-01-01

    Point clouds collected in urban scenes contain a huge number of points (e.g., billions), numerous objects with significant size variability, complex and incomplete structures, and variable point densities, raising great challenges for the automated extraction of urban objects in the field of photogrammetry, computer vision, and robotics. This paper addresses these challenges by proposing an automated method to extract urban objects robustly and efficiently. The proposed method generates multi-scale supervoxels from 3D point clouds using the point attributes (e.g., colors, intensities) and spatial distances between points, and then segments the supervoxels rather than individual points by combining graph based segmentation with multiple cues (e.g., principal direction, colors) of the supervoxels. The proposed method defines a set of rules for merging segments into meaningful units according to types of urban objects and forms the semantic knowledge of urban objects for the classification of objects. Finally, the proposed method extracts and classifies urban objects in a hierarchical order ranked by the saliency of the segments. Experiments show that the proposed method is efficient and robust for extracting buildings, streetlamps, trees, telegraph poles, traffic signs, cars, and enclosures from mobile laser scanning (MLS) point clouds, with an overall accuracy of 92.3%.

  14. Laser-scan cytometry: a new tool for clinical diagnostics

    NASA Astrophysics Data System (ADS)

    Maerz, Holger K.; Baumgartner, Adolf; Hambsch, Joerg; Hennig, Bert; Nuesse, Michael; Schmid, Thomas; Schneider, Peter; Zotz, Rainer; Tarnok, Attila

    1999-04-01

    The common usage of flow cytometry (FCM) in research and clinical diagnostic is limited by the lack visualizing the fluorescence labelled cells. The Laser Scanning Cytometer (LSC) enables multicolor cytometric measurements on a slide featuring relocation of single cells for further investigation via brightfield and fluorescence microscopy. Additionally, it is possible to capture these images for documentation. In a FISH application, the LSC was successfully used for automated scoring techniqeus for evaluating the frequency of aneuploid sperm in humans and mice. In just 30 minutes, we were able to acquire more than 15,000 sperms, a task which normally takes more than a day. After relocation, genetic defects were identified and confirmed via fluorescence microscopy. In an on going study, we investigate via the LSC the remain of a new radiopaque material for high resolution echocardiography in the blood circulation. At first the result exhibited that the radiopaque material is endocysed by leukocytes just after application but is still detectable via echocardiography for up to 40 minutes. In conclusion, with the additional data acquisition by the LSC, it is possible to perform further detailed information from very small samples. Therefore, we are working up to now on developing new methods to introduce the LSC in our clinical diagnostic of neonates undergoing cardiac surgery.

  15. Three-dimensional dental cast analyzing system using laser scanning.

    PubMed

    Kuroda, T; Motohashi, N; Tominaga, R; Iwata, K

    1996-10-01

    The purpose of this article is to introduce the outline of our newly developed three-dimensional dental cast analyzing system with laser scanning, and its preliminary clinical applications. The system is composed of a measuring device with a slit-ray laser projector and two sets of coupled charged devised video cameras, an image processing unit, a 16-bit personal computer as a controller, and an engineering workstation as a post processor. The dental cast is projected and scanned with a slit-ray laser beam. The raster coordinates of the target are determined with an image processor. Triangulation is applied to determine the location of each point. Generation of three-dimensional graphics of the dental cast takes approximately 40 minutes. About 90,000 sets of X, Y, Z coordinates are stored in the main memory of the microcomputer. The measurement error is less than 0.05 mm. Besides the conventional linear and angular measurements of the dental cast, we are also able to demonstrate the size of the palatal surface area and the volume of the oral cavity. The advantage of this system is that it facilitates the otherwise complicated and time-consuming mock surgery necessary for treatment planning in orthognathic surgery.

  16. Flow cytometric and laser scanning microscopic approaches in epigenetics research.

    PubMed

    Szekvolgyi, Lorant; Imre, Laszlo; Minh, Doan Xuan Quang; Hegedus, Eva; Bacso, Zsolt; Szabo, Gabor

    2009-01-01

    Our understanding of epigenetics has been transformed in recent years by the advance of technological possibilities based primarily on a powerful tool, chromatin immunoprecipitation (ChIP). However, in many cases, the detection of epigenetic changes requires methods providing a high-throughput (HTP) platform. Cytometry has opened a novel approach for the quantitative measurement of molecules, including PCR products, anchored to appropriately addressed microbeads (Pataki et al. 2005. Cytometry 68, 45-52). Here we show selected examples for the utility of two different cytometry-based platforms of epigenetic analysis: ChIP-on-beads, a flow-cytometric test of local histone modifications (Szekvolgyi et al. 2006. Cytometry 69, 1086-1091), and the laser scanning cytometry-based measurement of global epigenetic modifications that might help predict clinical behavior in different pathological conditions. We anticipate that such alternative tools may shortly become indispensable in clinical practice, translating the systematic screening of epigenetic tags from basic research into routine diagnostics of HTP demand.

  17. Laser Scanning System for Pressure and Temperature Paints

    NASA Technical Reports Server (NTRS)

    Sullivan, John

    1997-01-01

    Acquiring pressure maps of aerodynamic surfaces is very important for improving and validating the performance of aerospace vehicles. Traditional pressure measurements are taken with pressure taps embedded in the model surface that are connected to transducers. While pressure taps allow highly accurate measurements to be acquired, they do have several drawbacks. Pressure taps do not give good spatial resolution due to the need for individual pressure tubes, compounded by limited space available inside models. Also, building a model proves very costly if taps are needed because of the large amount of labor necessary to drill, connect and test each one. The typical cost to install one tap is about $200. Recently, a new method for measuring pressure on aerodynamic surfaces has been developed utilizing a technology known as pressure sensitive paints (PSP). Using PSP, pressure distributions can be acquired optically with high spatial resolution and simple model preparation. Flow structures can be easily visualized using PSP, but are missed using low spatial resolution arrays of pressure taps. PSP even allows pressure distributions to be found on rotating machinery where previously this has been extremely difficult or even impossible. The goal of this research is to develop a laser scanning system for use with pressure sensitive paints that allows accurate pressure measurements to be obtained on various aerodynamic surfaces ranging from wind tunnel models to high speed jet engine compressor blades.

  18. Electrostatically driven micromirrors for a miniaturized confocal laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Hofmann, Ulrich; Muehlmann, Sascha; Witt, Martin; Doerschel, Klaus; Schuetz, Rijk; Wagner, Bernd

    1999-09-01

    A compact two-mirror microscanner has been fabricated to build the central part of a miniaturized confocal laser scanning microscope. This microscope shall be mounted at the tip of an endoscope to provide high resolution imaging for medical diagnostics. In order to achieve a resolution of 500 X 500 image elements large scan angles and also large mirror dimensions have to be realized within a spatially strong limited housing. While bulk silicon technology on the one hand enables fabrication of micromirrors with nearly ideal elastical behavior, those actuators on the other hand often are too fragile for a lot of applications. This paper describes the design, fabrication and assembling of electrostatically driven torsional micromirrors that meet the requirements of fast two-dimensional scanning with high angular precision over large scan angles, compact design and also high shock resistance. This is achieved with the combination of bulk silicon technology with metal surface micromachining. Besides medical diagnostics these microscanners can be used in a wider range of applications such as displays, two-dimensional barcode scanning, multiplexing of fiber optics, etc.

  19. Multi-Pass Approach for Mobile Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Nolan, J.; Eckels, R.; Evers, M.; Singh, R.; Olsen, M. J.

    2015-08-01

    Mobile Terrestrial Laser Scanning (MTLS) has been utilised for an increasing number of corridor surveys. Current MTLS surveys require that many targets be placed along the corridor to monitor the MTLS trajectory's accuracy. These targets enable surveyors to directly evaluate the magnitude of GNSS errors at regular intervals and can also be used to adjust the trajectory to the survey control. However, this "Multi-Target" approach (MTA) is an onerous task that can significantly reduce efficiency. It also is inconvenient to the travelling public, as lanes are often blocked and traffic slowed to permit surveyors to work safely along the road corridor. This paper introduces a "Multi-Pass" approach (MPA), which minimises the number of targets required for monitoring the GNSS-controlled trajectory while still maintaining strict engineering accuracies. MPA uses the power of multiple, independent MTLS passes with different GNSS constellations to generate a "Control Polyline" from the point cloud for the corridor. The Control Polyline can be considered as a statistically valid survey measurement and be incorporated in a network adjustment to strengthen a control network by identifying outliers. Results from a test survey at the MTLS course maintained by the Oregon Department of Transportation illustrate the effectiveness of this approach.

  20. Quantifying Snow Volume Uncertainty from Repeat Terrestrial Laser Scanning Observations

    NASA Astrophysics Data System (ADS)

    Gadomski, P. J.; Hartzell, P. J.; Finnegan, D. C.; Glennie, C. L.; Deems, J. S.

    2014-12-01

    Terrestrial laser scanning (TLS) systems are capable of providing rapid, high density, 3D topographic measurements of snow surfaces from increasing standoff distances. By differencing snow surface with snow free measurements within a common scene, snow depths and volumes can be estimated. These data can support operational water management decision-making when combined with measured or modeled snow densities to estimate basin water content, evaluate in-situ data, or drive operational hydrologic models. In addition, change maps from differential TLS scans can also be used to support avalanche control operations to quantify loading patterns for both pre-control planning and post-control assessment. However, while methods for computing volume from TLS point cloud data are well documented, a rigorous quantification of the volumetric uncertainty has yet to be presented. Using repeat TLS data collected at the Arapahoe Basin Ski Area in Summit County, Colorado, we demonstrate the propagation of TLS point measurement and cloud registration uncertainties into 3D covariance matrices at the point level. The point covariances are then propagated through a volume computation to arrive at a single volume uncertainty value. Results from two volume computation methods are compared and the influence of data voids produced by occlusions examined.

  1. Clustering of Multispectral Airborne Laser Scanning Data Using Gaussian Decomposition

    NASA Astrophysics Data System (ADS)

    Morsy, S.; Shaker, A.; El-Rabbany, A.

    2017-09-01

    With the evolution of the LiDAR technology, multispectral airborne laser scanning systems are currently available. The first operational multispectral airborne LiDAR sensor, the Optech Titan, acquires LiDAR point clouds at three different wavelengths (1.550, 1.064, 0.532 μm), allowing the acquisition of different spectral information of land surface. Consequently, the recent studies are devoted to use the radiometric information (i.e., intensity) of the LiDAR data along with the geometric information (e.g., height) for classification purposes. In this study, a data clustering method, based on Gaussian decomposition, is presented. First, a ground filtering mechanism is applied to separate non-ground from ground points. Then, three normalized difference vegetation indices (NDVIs) are computed for both non-ground and ground points, followed by histograms construction from each NDVI. The Gaussian function model is used to decompose the histograms into a number of Gaussian components. The maximum likelihood estimate of the Gaussian components is then optimized using Expectation - Maximization algorithm. The intersection points of the adjacent Gaussian components are subsequently used as threshold values, whereas different classes can be clustered. This method is used to classify the terrain of an urban area in Oshawa, Ontario, Canada, into four main classes, namely roofs, trees, asphalt and grass. It is shown that the proposed method has achieved an overall accuracy up to 95.1 % using different NDVIs.

  2. Filtering method for 3D laser scanning point cloud

    NASA Astrophysics Data System (ADS)

    Liu, Da; Wang, Li; Hao, Yuncai; Zhang, Jun

    2015-10-01

    In recent years, with the rapid development of the hardware and software of the three-dimensional model acquisition, three-dimensional laser scanning technology is utilized in various aspects, especially in space exploration. The point cloud filter is very important before using the data. In the paper, considering both the processing quality and computing speed, an improved mean-shift point cloud filter method is proposed. Firstly, by analyze the relevance of the normal vector between the upcoming processing point and the near points, the iterative neighborhood of the mean-shift is selected dynamically, then the high frequency noise is constrained. Secondly, considering the normal vector of the processing point, the normal vector is updated. Finally, updated position is calculated for each point, then each point is moved in the normal vector according to the updated position. The experimental results show that the large features are retained, at the same time, the small sharp features are also existed for different size and shape of objects, so the target feature information is protected precisely. The computational complexity of the proposed method is not high, it can bring high precision results with fast speed, so it is very suitable for space application. It can also be utilized in civil, such as large object measurement, industrial measurement, car navigation etc. In the future, filter with the help of point strength will be further exploited.

  3. Detection of windthrown trees using airborne laser scanning

    NASA Astrophysics Data System (ADS)

    Nyström, Mattias; Holmgren, Johan; Fransson, Johan E. S.; Olsson, Håkan

    2014-08-01

    In this study, a method has been developed for the detection of windthrown trees under a forest canopy, using the difference between two elevation models created from the same high density (65 points/m2) airborne laser scanning data. The difference image showing objects near the ground was created by subtracting a standard digital elevation model (DEM) from a more detailed DEM created using an active surface algorithm. Template matching was used to automatically detect windthrown trees in the difference image. The 54 ha study area is located in hemi-boreal forest in southern Sweden (Lat. 58°29‧ N, Long. 13°38‧ E) and is dominated by Norway spruce (Picea abies) with 3.5% deciduous species (mostly birch) and 1.7% Scots pine (Pinus sylvestris). The result was evaluated using 651 field measured windthrown trees. At individual tree level, the detection rate was 38% with a commission error of 36%. Much higher detection rates were obtained for taller trees; 89% of the trees taller than 27 m were detected. For pine the individual tree detection rate was 82%, most likely due to the more easily visible stem and lack of branches. When aggregating the results to 40 m square grid cells, at least one tree was detected in 77% of the grid cells which according to the field measurements contained one or more windthrown trees.

  4. Systematic Effects in Laser Scanning and Visualization by Confidence Regions

    NASA Astrophysics Data System (ADS)

    Koch, Karl-Rudolf; Brockmann, Jan Martin

    2016-12-01

    A new method for dealing with systematic effects in laser scanning and visualizing them by confidence regions is derived. The standard deviations of the systematic effects are obtained by repeatedly measuring three-dimensional coordinates by the laser scanner. In addition, autocovariance and cross-covariance functions are computed by the repeated measurements and give the correlations of the systematic effects. The normal distribution for the measurements and the multivariate uniform distribution for the systematic effects are applied to generate random variates for the measurements and random variates for the measurements plus systematic effects. Monte Carlo estimates of the expectations and the covariance matrix of the measurements with systematic effects are computed. The densities for the confidence ellipsoid for the measurements and the confidence region for the measurements with systematic effects are obtained by relative frequencies. They only depend on the size of the rectangular volume elements for which the densities are determined. The problem of sorting the densities is solved by sorting distances together with the densities. This allows a visualization of the confidence ellipsoid for the measurements and the confidence region for the measurements with systematic effects.

  5. Laser Scanning System for Pressure and Temperature Paints

    NASA Technical Reports Server (NTRS)

    Sullivan, John

    1997-01-01

    Acquiring pressure maps of aerodynamic surfaces is very important for improving and validating the performance of aerospace vehicles. Traditional pressure measurements are taken with pressure taps embedded in the model surface that are connected to transducers. While pressure taps allow highly accurate measurements to be acquired, they do have several drawbacks. Pressure taps do not give good spatial resolution due to the need for individual pressure tubes, compounded by limited space available inside models. Also, building a model proves very costly if taps are needed because of the large amount of labor necessary to drill, connect and test each one. The typical cost to install one tap is about $200. Recently, a new method for measuring pressure on aerodynamic surfaces has been developed utilizing a technology known as pressure sensitive paints (PSP). Using PSP, pressure distributions can be acquired optically with high spatial resolution and simple model preparation. Flow structures can be easily visualized using PSP, but are missed using low spatial resolution arrays of pressure taps. PSP even allows pressure distributions to be found on rotating machinery where previously this has been extremely difficult or even impossible. The goal of this research is to develop a laser scanning system for use with pressure sensitive paints that allows accurate pressure measurements to be obtained on various aerodynamic surfaces ranging from wind tunnel models to high speed jet engine compressor blades.

  6. Automatic Extraction of Road Markings from Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Ma, H.; Pei, Z.; Wei, Z.; Zhong, R.

    2017-09-01

    Road markings as critical feature in high-defination maps, which are Advanced Driver Assistance System (ADAS) and self-driving technology required, have important functions in providing guidance and information to moving cars. Mobile laser scanning (MLS) system is an effective way to obtain the 3D information of the road surface, including road markings, at highway speeds and at less than traditional survey costs. This paper presents a novel method to automatically extract road markings from MLS point clouds. Ground points are first filtered from raw input point clouds using neighborhood elevation consistency method. The basic assumption of the method is that the road surface is smooth. Points with small elevation-difference between neighborhood are considered to be ground points. Then ground points are partitioned into a set of profiles according to trajectory data. The intensity histogram of points in each profile is generated to find intensity jumps in certain threshold which inversely to laser distance. The separated points are used as seed points to region grow based on intensity so as to obtain road mark of integrity. We use the point cloud template-matching method to refine the road marking candidates via removing the noise clusters with low correlation coefficient. During experiment with a MLS point set of about 2 kilometres in a city center, our method provides a promising solution to the road markings extraction from MLS data.

  7. Semiquantitative confocal laser scanning microscopy applied to marine invertebrate ecotoxicology.

    PubMed

    Chandler, G Thomas; Volz, David C

    2004-01-01

    Confocal laser scanning microscopy (CLSM) represents a powerful, but largely unexplored ecotoxicologic tool for rapidly assessing in vivo effects of toxicants on marine invertebrate embryo quality and development. We describe here a new semiquantitative CLSM approach for assessing relative yolk quantity in marine invertebrate embryos (harpacticoid copepods) produced by parents reared from hatching to adult in the polycylic aromatic hydrocarbon chrysene. This method is based on fluorogenic labeling of embryo yolk and subsequent statistical analysis of areal pixel intensities over multiple Z-series using a general linear model (GLM)-nested analysis of variance. The fluorescent yolk-labeling method described here was able to detect statistically significant differences in yolk concentrations in marine copepod (Amphiascus tenuiremis) eggs or embryos from females exposed to ultraviolet light and chrysene-contaminated sediments. Yolk intensities in embryos from females cultured throughout their life cycles in clean sediments were statistically identical with or without UV exposure. In contrast, yolk intensities in embryos of females cultured throughout their life cycle in chrysene-contaminated sediments were significantly higher in the non-UV-exposed treatment with chrysene at 2500 ng/g sediment (65.7% higher) and the UV-exposed treatment with chrysene at 500 ng/g sediment (76.6% higher).

  8. Street environment change detection from mobile laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Xiao, Wen; Vallet, Bruno; Brédif, Mathieu; Paparoditis, Nicolas

    2015-09-01

    Mobile laser scanning (MLS) has become a popular technique for road inventory, building modelling, infrastructure management, mobility assessment, etc. Meanwhile, due to the high mobility of MLS systems, it is easy to revisit interested areas. However, change detection using MLS data of street environment has seldom been studied. In this paper, an approach that combines occupancy grids and a distance-based method for change detection from MLS point clouds is proposed. Unlike conventional occupancy grids, our occupancy-based method models space based on scanning rays and local point distributions in 3D without voxelization. A local cylindrical reference frame is presented for the interpolation of occupancy between rays according to the scanning geometry. The Dempster-Shafer theory (DST) is utilized for both intra-data evidence fusion and inter-data consistency assessment. Occupancy of reference point cloud is fused at the location of target points and then the consistency is evaluated directly on the points. A point-to-triangle (PTT) distance-based method is combined to improve the occupancy-based method. Because it is robust to penetrable objects, e.g. vegetation, which cause self-conflicts when modelling occupancy. The combined method tackles irregular point density and occlusion problems, also eliminates false detections on penetrable objects.

  9. Laser scanning dental probe for endodontic root canal treatment

    NASA Astrophysics Data System (ADS)

    Blank, Molly A. B.; Friedrich, Michal; Hamilton, Jeffrey D.; Lee, Peggy; Berg, Joel; Seibel, Eric J.

    2011-03-01

    Complications that arise during endodontic procedures pose serious threats to the long-term integrity and health of the tooth. Potential complexities of root canals include residual pulpal tissue, cracks, mesial-buccal 2 and accessory canals. In the case of a failed root canal, a successful apicoectomy can be jeopardized by isthmuses, accessory canals, and root microfracture. Confirming diagnosis using a small imaging probe would allow proper treatment and prevent retreatment of endodontic procedures. An ultrathin and flexible laser scanning endoscope of 1.2 to 1.6mm outer diameter was used in vitro to image extracted teeth with varied root configurations. Teeth were opened using a conventional bur and high speed drill. Imaging within the opened access cavity clarified the location of the roots where canal filing would initiate. Although radiographs are commonly used to determine the root canal size, position, and shape, the limited 2D image perspective leaves ambiguity that could be clarified if used in conjunction with a direct visual imaging tool. Direct visualization may avoid difficulties in locating the root canal and reduce the number of radiographs needed. A transillumination imaging device with the separated illumination and light collection functions rendered cracks visible in the prepared teeth that were otherwise indiscernible using reflected visible light. Our work demonstrates that a small diameter endoscope with high spatial resolution may significantly increase the efficiency and success of endodontic procedures.

  10. Automatic analysis for neuron by confocal laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Satou, Kouhei; Aoki, Yoshimitsu; Mataga, Nobuko; Hensh, Takao K.; Taki, Katuhiko

    2005-12-01

    The aim of this study is to develop a system that recognizes both the macro- and microscopic configurations of nerve cells and automatically performs the necessary 3-D measurements and functional classification of spines. The acquisition of 3-D images of cranial nerves has been enabled by the use of a confocal laser scanning microscope, although the highly accurate 3-D measurements of the microscopic structures of cranial nerves and their classification based on their configurations have not yet been accomplished. In this study, in order to obtain highly accurate measurements of the microscopic structures of cranial nerves, existing positions of spines were predicted by the 2-D image processing of tomographic images. Next, based on the positions that were predicted on the 2-D images, the positions and configurations of the spines were determined more accurately by 3-D image processing of the volume data. We report the successful construction of an automatic analysis system that uses a coarse-to-fine technique to analyze the microscopic structures of cranial nerves with high speed and accuracy by combining 2-D and 3-D image analyses.

  11. Tree height growth measurement with single-scan airborne, static terrestrial and mobile laser scanning.

    PubMed

    Lin, Yi; Hyyppä, Juha; Kukko, Antero; Jaakkola, Anttoni; Kaartinen, Harri

    2012-01-01

    This study explores the feasibility of applying single-scan airborne, static terrestrial and mobile laser scanning for improving the accuracy of tree height growth measurement. Specifically, compared to the traditional works on forest growth inventory with airborne laser scanning, two issues are regarded: "Can the new technique characterize the height growth for each individual tree?" and "Can this technique refine the minimum growth-discernable temporal interval further?" To solve these two puzzles, the sampling principles of the three laser scanning modes were first examined, and their error sources against the task of tree-top capturing were also analyzed. Next, the three-year growths of 58 Nordic maple trees (Crimson King) for test were intermittently surveyed with one type of laser scanning each time and then analyzed by statistics. The evaluations show that the height growth of each individual tree still cannot be reliably characterized even by single-scan terrestrial laser scanning, and statistical analysis is necessary in this scenario. After Gaussian regression, it is found that the minimum temporal interval with distinguishable tree height growths can be refined into one month based on terrestrial laser scanning, far better than the two years deduced in the previous works based on airborne laser scanning. The associated mean growth was detected to be about 0.12 m. Moreover, the parameter of tree height generally under-estimated by airborne and even mobile laser scanning can be relatively revised by means of introducing static terrestrial laser scanning data. Overall, the effectiveness of the proposed technique is primarily validated.

  12. Modeling Mediterranean forest structure using airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Bottalico, Francesca; Chirici, Gherardo; Giannini, Raffaello; Mele, Salvatore; Mura, Matteo; Puxeddu, Michele; McRoberts, Ronald E.; Valbuena, Ruben; Travaglini, Davide

    2017-05-01

    The conservation of biological diversity is recognized as a fundamental component of sustainable development, and forests contribute greatly to its preservation. Structural complexity increases the potential biological diversity of a forest by creating multiple niches that can host a wide variety of species. To facilitate greater understanding of the contributions of forest structure to forest biological diversity, we modeled relationships between 14 forest structure variables and airborne laser scanning (ALS) data for two Italian study areas representing two common Mediterranean forests, conifer plantations and coppice oaks subjected to irregular intervals of unplanned and non-standard silvicultural interventions. The objectives were twofold: (i) to compare model prediction accuracies when using two types of ALS metrics, echo-based metrics and canopy height model (CHM)-based metrics, and (ii) to construct inferences in the form of confidence intervals for large area structural complexity parameters. Our results showed that the effects of the two study areas on accuracies were greater than the effects of the two types of ALS metrics. In particular, accuracies were less for the more complex study area in terms of species composition and forest structure. However, accuracies achieved using the echo-based metrics were only slightly greater than when using the CHM-based metrics, thus demonstrating that both options yield reliable and comparable results. Accuracies were greatest for dominant height (Hd) (R2 = 0.91; RMSE% = 8.2%) and mean height weighted by basal area (R2 = 0.83; RMSE% = 10.5%) when using the echo-based metrics, 99th percentile of the echo height distribution and interquantile distance. For the forested area, the generalized regression (GREG) estimate of mean Hd was similar to the simple random sampling (SRS) estimate, 15.5 m for GREG and 16.2 m SRS. Further, the GREG estimator with standard error of 0.10 m was considerable more precise than the SRS

  13. Tree classification with fused mobile laser scanning and hyperspectral data.

    PubMed

    Puttonen, Eetu; Jaakkola, Anttoni; Litkey, Paula; Hyyppä, Juha

    2011-01-01

    Mobile Laser Scanning data were collected simultaneously with hyperspectral data using the Finnish Geodetic Institute Sensei system. The data were tested for tree species classification. The test area was an urban garden in the City of Espoo, Finland. Point clouds representing 168 individual tree specimens of 23 tree species were determined manually. The classification of the trees was done using first only the spatial data from point clouds, then with only the spectral data obtained with a spectrometer, and finally with the combined spatial and hyperspectral data from both sensors. Two classification tests were performed: the separation of coniferous and deciduous trees, and the identification of individual tree species. All determined tree specimens were used in distinguishing coniferous and deciduous trees. A subset of 133 trees and 10 tree species was used in the tree species classification. The best classification results for the fused data were 95.8% for the separation of the coniferous and deciduous classes. The best overall tree species classification succeeded with 83.5% accuracy for the best tested fused data feature combination. The respective results for paired structural features derived from the laser point cloud were 90.5% for the separation of the coniferous and deciduous classes and 65.4% for the species classification. Classification accuracies with paired hyperspectral reflectance value data were 90.5% for the separation of coniferous and deciduous classes and 62.4% for different species. The results are among the first of their kind and they show that mobile collected fused data outperformed single-sensor data in both classification tests and by a significant margin.

  14. Antecedents of two-photon excitation laser scanning microscopy.

    PubMed

    Masters, Barry R; So, Peter T C

    2004-01-01

    In 1931, Maria Göppert-Mayer published her doctoral dissertation on the theory of two-photon quantum transitions (two-photon absorption and emission) in atoms. This report describes and analyzes the theoretical and experimental work on nonlinear optics, in particular two-photon excitation processes, that occurred between 1931 and the experimental implementation of two-photon excitation microscopy by the group of Webb in 1990. In addition to Maria Göppert-Mayer's theoretical work, the invention of the laser has a key role in the development of two-photon microscopy. Nonlinear effects were previously observed in different frequency domains (low-frequency electric and magnetic fields and magnetization), but the high electric field strength afforded by lasers was necessary to demonstrate many nonlinear effects in the optical frequency range. In 1978, the first high-resolution nonlinear microscope with depth resolution was described by the Oxford group. Sheppard and Kompfner published a study in Applied Optics describing microscopic imaging based on second-harmonic generation. In their report, they further proposed that other nonlinear optical effects, such as two-photon fluorescence, could also be applied. However, the developments in the field of nonlinear optical stalled due to a lack of a suitable laser source. This obstacle was removed with the advent of femtosecond lasers in the 1980s. In 1990, the seminal study of Denk, Strickler, and Webb on two-photon laser scanning fluorescence microscopy was published in Science. Their paper clearly demonstrated the capability of two-photon excitation microscopy for biology, and it served to convince a wide audience of scientists of the potential capability of the technique.

  15. Tree Classification with Fused Mobile Laser Scanning and Hyperspectral Data

    PubMed Central

    Puttonen, Eetu; Jaakkola, Anttoni; Litkey, Paula; Hyyppä, Juha

    2011-01-01

    Mobile Laser Scanning data were collected simultaneously with hyperspectral data using the Finnish Geodetic Institute Sensei system. The data were tested for tree species classification. The test area was an urban garden in the City of Espoo, Finland. Point clouds representing 168 individual tree specimens of 23 tree species were determined manually. The classification of the trees was done using first only the spatial data from point clouds, then with only the spectral data obtained with a spectrometer, and finally with the combined spatial and hyperspectral data from both sensors. Two classification tests were performed: the separation of coniferous and deciduous trees, and the identification of individual tree species. All determined tree specimens were used in distinguishing coniferous and deciduous trees. A subset of 133 trees and 10 tree species was used in the tree species classification. The best classification results for the fused data were 95.8% for the separation of the coniferous and deciduous classes. The best overall tree species classification succeeded with 83.5% accuracy for the best tested fused data feature combination. The respective results for paired structural features derived from the laser point cloud were 90.5% for the separation of the coniferous and deciduous classes and 65.4% for the species classification. Classification accuracies with paired hyperspectral reflectance value data were 90.5% for the separation of coniferous and deciduous classes and 62.4% for different species. The results are among the first of their kind and they show that mobile collected fused data outperformed single-sensor data in both classification tests and by a significant margin. PMID:22163894

  16. Evaluation of Terrestrial Laser Scanning for Rice Growth Monitoring

    NASA Astrophysics Data System (ADS)

    Tilly, N.; Hoffmeister, D.; Liang, H.; Cao, Q.; Liu, Y.; Lenz-Wiedemann, V.; Miao, Y.; Bareth, G.

    2012-08-01

    The rapidly growing world population and the resulting pressure on the efficiency of agriculture require a sustainable development of intensive field management with regard to natural resources. In this context, the use of non-destructive remote sensing technologies to monitor status and change detection of plant growth is in the focus of research and application. In this contribution, we evaluate the applicability of multitemporal terrestrial laser scanning (TLS) for rice growth monitoring. The test sites are located around Jiansanjiang in Heilongjiang Province in the far northeast of China. The focus of the field experiment was on different nitrogen fertilizer inputs during the growing period in 2011. To realize the monitoring approach, three campaigns were carried out during the vegetative stage of rice plants. For all campaigns the terrestrial laser scanner Riegl VZ-1000 was used. The achieved knowledge can be described in two parts. First, for each date the variability of plant height and biomass is detectable for the whole experiment field and - more important - between the plots. Furthermore, differences in height and biomass related to edge effects can be investigated for every single plot. The spatial distribution is visualized by Crop Surface Models (CSM), which are digital surface models with a high resolution and accuracy achieved by the interpolation of the 3D point clouds. Secondly, the multitemporal surveying approach enables the monitoring of the growth rate of the rice plants. Additionally, it is possible to detect and analyze as well the spatial distribution of the changes by comparing the CSMs. Our results show that TLS is a suitable and promising method for rice growth monitoring. Furthermore, the contemporaneous surveying with other sensors enables us to validate our measurements and bares opportunities for further enhancements.

  17. The use of laser scanning confocal microscopy (LSCM) in materials science.

    PubMed

    Hovis, D B; Heuer, A H

    2010-12-01

    Laser scanning confocal microscopes are essential and ubiquitous tools in the biological, biochemical and biomedical sciences, and play a similar role to scanning electron microscopes in materials science. However, modern laser scanning confocal microscopes have a number of advantages for the study of materials, in addition to their obvious uses for high resolution reflected and transmitted light optical microscopy. In this paper, we provide several examples that exploit the laser scanning confocal microscope's capabilities of pseudo-infinite depth of field imaging, topographic imaging, photo-stimulated luminescence imaging and Raman spectroscopic imaging. © 2010 The Authors Journal of Microscopy © 2010 The Royal Microscopical Society.

  18. CONFOCAL LASER SCANNING MICROSCOPY OF APOPTOSIS IN WHOLE MOUSE AND RAT OVARIES

    EPA Science Inventory

    Confocal Laser Scanning Microscopy of Apoptosis in Whole Mouse and Rat Ovaries. Robert M. Zucker Susan C. Jeffay and Sally D. Perreault Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Protection Agency, Research ...

  19. CONFOCAL LASER SCANNING MICROSCOPY OF APOPTOSIS IN WHOLE MOUSE AND RAT OVARIES

    EPA Science Inventory

    Confocal Laser Scanning Microscopy of Apoptosis in Whole Mouse and Rat Ovaries. Robert M. Zucker Susan C. Jeffay and Sally D. Perreault Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Protection Agency, Research ...

  20. Development of an Online Archive for Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Crosby, Christopher; Lowry, Ben; McWhirter, Jeff; Phillips, David; Meertens, Chuck

    2013-04-01

    The UNAVCO Geodetic Imaging program provides terrestrial laser scanning (TLS) support to the Earth science research community through a TLS instrumentation pool of five scanners, field engineering, data processing, and technical training. As part of this community TLS support role, UNAVCO is responsible for generation of level one (L1) TLS data products and TLS data archive and access. A UNAVCO-organized and US National Science Foundation-funded TLS community workshop held October 2011 in Boulder, Colorado defined many of the challenges and requirements a TLS data archive and access system must address. TLS data acquisition presents unique challenges for metadata, provenance capture, and data archive. TLS datasets are often large and level zero (L0 - raw) data are stored in a variety of proprietary formats, requiring conversion and standardization for access and exchange. Due to the wide range of scientific and engineering objectives that motivate TLS data collection, field methods and collection techniques vary greatly and must be thoroughly documented in project metadata. These challenges make data and metadata capture, preservation, and provenance important objectives for an online TLS archive. To address these challenges, UNAVCO is developing a TLS archive based on the open source RAMADDA platform (http://ramadda.org). The UNAVCO TLS archive will provide online archive of L0 and L1 data products, capture field metadata and data processing workflows for provenance, and store original georeferencing information. In addition, the TLS repository provides on-demand services for simple point cloud visualization, data sub-setting and thinning, and file format (e.g., LAS, ASCII, proprietary) data conversion. The system also offers automation of RINEX processing of GPS data, OPUS and CSRS submission and solution ingestion, and generation of control point lists to streamline georeferencing of TLS point cloud data. Georeferencing metadata and GPS file provenance are

  1. Estimation of terracing characteristics from airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Kokalj, Žiga

    2015-04-01

    Agricultural terraces are a fundamental morphological form of the Slovenian landscape. They are present in all of its diverse geographical regions, from Mediterranean and Dinaric hills and plateaus, Alpine mountains and plains, to Pannonian hills. New systematic research based on mapping aerial orthophotos and historical maps revealed previously unrecorded distribution and extent of terracing. However, the extensive overgrowing of the Slovenian countryside in the past century, when forest cover has grown from 40% to more than 60%, hid many of the terraces under a thick forest canopy. This is especially true for the higher and more remote areas where unfavourable natural conditions have coupled with depopulation processes. In such conditions, the only reasonable technique to observe cultural terraces and other remains of past human activities over large areas is airborne laser scanning. With the country-wide airborne lidar data becoming available, many new possibilities for discovery as well as quantitative analyses are becoming available. We explored manual and semiautomatic approaches to obtain terracing characteristics around representative villages of diverse landscape types. Individual terraces can be described with several attributes, such as riser slope gradient, riser height, tread area, length and width, ratio of length and width, altitude, location of the terrace in the thermal band, distance to the settlement, number and type of trees, distance between trees, and number of vineyard rows. Such characteristics can be derived manually, which can be painstakingly slow, but with relative precisions reaching the order of centimetres and decimetres, or semiautomatically, which is much faster, but with worse precision levels, mainly due to various outliers and errors in processing. The success of attribute derivation is highly dependent on raw lidar data acquisition parameters and processing. Manual interpretation has a distinct advantage of the possibility to

  2. Geodetic Imaging of Marsh Surface Elevation with Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Nguyen, C. T.; Starek, M. J.; Gibeaut, J. C.; Lord, A.

    2015-12-01

    The resilience of marshes to a rising sea is dependent on their elevation response. Given the level of precision required to measure minute changes in marsh elevation over time, survey methods have to be adapted to minimize impacts to the sediment surface. Current approaches include Surface Elevation Tables (SETs), which are used to monitor wetland surface change with respect to an in situ vertical benchmark. Although SETs have been proven as an effective technique to track subtle sedimentation rates (< 1 cm/year), they provide a single-point measurement construed to a location with limited to no information on the spatial pattern in marsh elevation response away from the measurement site. Terrestrial Laser Scanning (TLS) offers potential for high definition monitoring of marsh surface evolution. However, several challenges must be overcome in the application of the technology for geodetic imaging of marsh surfaces. These challenges include surface occlusion by dense vegetation, error propagation due to scan co-registration and referencing across time, impacts of scan angle, and filtering of non-ground points. Researchers at Texas A&M University-Corpus Christi conducted a field-survey of a marsh within the Grand Bay National Estuarine Research Reserve using TLS and RTK GPS for comparison. Grand Bay in Mississippi USA is one of the most biologically productive estuarine ecosystems in the Gulf of Mexico. The study region is covered by dense and tall saw-grass that makes it a challenging environment for bare-earth mapping. For this survey, a Riegl VZ-400 TLS (1550 nm wavelength) was utilized. The system is capable of recording multiple returns per a transmitted pulse (up to 15) and provides full-waveform output for signal post-processing to extract returns. The objectives of the study are twofold: 1) examine impacts of TLS survey design, scan angle and scan density on marsh elevation mapping; 2) assess the capabilities of multiple-echo and full-waveform TLS data to

  3. Image enhancement with two-photon laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Wang, Chun-Ming

    1998-07-01

    Although confocal microscopy provides an efficient means of fluorescence imaging, many obstacles including extensive photobleaching and limited penetration depths limit its application. Emergence of two-photon laser scanning microscopy (TPLSM), with limited excitation volume, successfully overcomes those difficulties. Not only is TPLSM shown to have much less photobleaching and better penetration depths than CLSM, but also it is capable of doing UV imaging without using special UV optical elements. Several different aspects of TPLSM are discussed in the dissertation. The progress of 3-D fluorescence microscopy, a historical retrospective of two-photon excitation, the physics of two-photon excitation and our instrument setup are discussed in the first chapter. In chapter II, a qualitative and quantitative confirmation of two-photon excitation, optical transfer efficiency, point spread function and resolution, signal-to-noise ratio, and two-photon excitation spectrum are presented. Chapter III shows the comparison between TPLSM and CLSM. Although CLSM has slightly better resolution than TPLSM, TPLSM has much less photobleaching and toxicity, greater penetration depth, less signal cross talk, and better signal collecting efficiency. Image deconvolution techniques with CLSM and TPLSM are discussed in chapter IV. Using this image processing methods and acquired PSF, we improved the resolution of CLSM and TPLSM dramatically. These deblurring techniques were applied to study the positions of proteins in the pre- and postsynaptic compartments of rat hippocampal culture cells. The improved resolution enabled us to distinguish the positions of Synapsin I, CaM Kinase II, and PSD-95, which could only be done with electron microscopy before. In chapter V, image degradation due to brain tissue scattering is discussed. Emission signals with long wavelengths were shown to have better resolution and image contrast because of less tissue scattering. This result shows the necessity

  4. Mapping Inhibitory Neuronal Circuits by Laser Scanning Photostimulation

    PubMed Central

    Ikrar, Taruna; Olivas, Nicholas D.; Shi, Yulin; Xu, Xiangmin

    2011-01-01

    Inhibitory neurons are crucial to cortical function. They comprise about 20% of the entire cortical neuronal population and can be further subdivided into diverse subtypes based on their immunochemical, morphological, and physiological properties1-4. Although previous research has revealed much about intrinsic properties of individual types of inhibitory neurons, knowledge about their local circuit connections is still relatively limited3,5,6. Given that each individual neuron's function is shaped by its excitatory and inhibitory synaptic input within cortical circuits, we have been using laser scanning photostimulation (LSPS) to map local circuit connections to specific inhibitory cell types. Compared to conventional electrical stimulation or glutamate puff stimulation, LSPS has unique advantages allowing for extensive mapping and quantitative analysis of local functional inputs to individually recorded neurons3,7-9. Laser photostimulation via glutamate uncaging selectively activates neurons perisomatically, without activating axons of passage or distal dendrites, which ensures a sub-laminar mapping resolution. The sensitivity and efficiency of LSPS for mapping inputs from many stimulation sites over a large region are well suited for cortical circuit analysis. Here we introduce the technique of LSPS combined with whole-cell patch clamping for local inhibitory circuit mapping. Targeted recordings of specific inhibitory cell types are facilitated by use of transgenic mice expressing green fluorescent proteins (GFP) in limited inhibitory neuron populations in the cortex3,10, which enables consistent sampling of the targeted cell types and unambiguous identification of the cell types recorded. As for LSPS mapping, we outline the system instrumentation, describe the experimental procedure and data acquisition, and present examples of circuit mapping in mouse primary somatosensory cortex. As illustrated in our experiments, caged glutamate is activated in a spatially

  5. Diffusion of photoacid generators by laser scanning confocal microscopy

    NASA Astrophysics Data System (ADS)

    Zhang, Ping L.; Webber, Stephen E.; Mendenhall, J.; Byers, Jeffrey D.; Chao, Keith K.

    1998-06-01

    Diffusion of the photogenerated acid during the period of time between exposure and development can cause contrast loss and ultimately loss of the latent image. This is especially relevant for chemically amplified photoresists that require a post-exposure baking step, which in turn facilitates acid diffusion due to the high temperature normally employed. It is thus important to develop techniques with good spatial resolution to monitor the photogeneration of acid. More precisely, we need techniques that provide two distinct types of information: spatial resolution on various length scales within the surface layer and also sufficient depth resolution so that one can observe the transition from very surface layer to bulk structure in the polymer blend coated on silicon substrate. Herein laser scanning confocal microscopy is used to evaluate the resist for the first time. We report the use of the confocal microscopy to map the pag/dye distribution in PHS matrices, with both reflectance images and fluorescence images. A laser beam is focused onto a small 3D volume element, termed a voxel. It is typically 200 nm X 200 nm laterally and 800 nm axially. The illuminated voxel is viewed such that only signals emanating from this voxel are detected, i.e., signal from outside the probed voxel is not detected. By adjusting the vertical position of the laser focal point, the voxel can be moved to the designated lateral plane to produce an image. Contrast caused by topology difference between the exposed and unexposed area can be eliminated. Bis-p-butylphenyl iodonium triflat (7% of polyhydroxystyrene) is used as photoacid generators. 5% - 18% (by weight, PHS Mn equals 13 k) resist in PGMEA solution is spin cast onto the treated quartz disk with thickness of 1.4 micrometers , 5 micrometers space/10 micrometers pitch chrome mask is used to generate the pattern with mercury DUV illumination. Fluoresceinamine, the pH-sensitive dye, is also used to enhance the contrast of

  6. Terrestrial Laser Scanning for Coastal Geomorphologic Research in Western Greece

    NASA Astrophysics Data System (ADS)

    Hoffmeister, D.; Tilly, N.; Curdt, C.; Aasen, H.; Ntageretzis, K.; Hadler, H.; Willershäuser, T.; Vött, A.; Bareth, G.

    2012-07-01

    We used terrestrial laser scanning (TLS) for (i) accurate volume estimations of dislocated boulders moved by high-energy impacts and for (ii) monitoring of annual coastal changes. In this contribution, we present three selected sites in Western Greece that were surveyed during a time span of four years (2008-2011). The Riegl LMS-Z420i laser scanner was used in combination with a precise DGPS system (Topcon HiPer Pro). Each scan position and a further target were recorded for georeferencing and merging of the point clouds. For the annual detection of changes, reference points for the base station of the DGPS system were marked. Our studies show that TLS is capable to accurately estimate volumes of boulders, which were dislocated and deposited inland from the littoral zone. The mass of each boulder was calculated from this 3D-reconstructed volume and according density data. The masses turned out to be considerably smaller than common estimated masses based on tape-measurements and according density approximations. The accurate mass data was incorporated into wave transport equations, which estimate wave velocities of high-energy impacts. As expected, these show smaller wave velocities, due to the incorporated smaller mass. Furthermore, TLS is capable to monitor annual changes on coastal areas. The changes are detected by comparing high resolution digital elevation models from every year. On a beach site, larger areas of sea-weed and sandy sediments are eroded. In contrast, bigger gravel with 30-50 cm diameter was accumulated. At the other area with bigger boulders and a different coastal configuration only slightly differences were detectable. In low-lying coastal areas and along recent beaches, post-processing of point clouds turned out to be more difficult, due to noise effects by water and shadowing effects. However, our studies show that the application of TLS in different littoral settings is an appropriate and promising tool. The combination of both instruments

  7. Determination of Percent Body Fat Using 3D Whole Body Laser Scanning: A Preliminary Investigation

    DTIC Science & Technology

    2006-11-01

    circumferences, 3D whole body laser scans and DEXA scans were performed on fifty-one men and women age 18-62. Mean percent body fat was not statistically...3D whole body laser scan , and DEXA scan to measure individuals during a one hour measurement session. 1 Report Documentation Page Form...underwent a 6 minute whole body DEXA scan using a GE Lunar Prodigy DEXA scanner running software version 7.53. Percent body fat was calculated from the

  8. Mobile 3D laser scanning technology application in the surveying of urban underground rail transit

    NASA Astrophysics Data System (ADS)

    Han, Youmei; Yang, Bogang; Zhen, Yinan

    2016-11-01

    Mobile 3D laser scanning technology is one hot kind of digital earth technology. 3D completion surveying is relative new concept in surveying and mapping. A kind of mobile 3D laser scanning system was developed for the urban underground rail 3D completion surveying. According to the characteristics of underground rail environment and the characters of the mobile laser scanning system, it designed a suitable test scheme to improving the accuracy of this kind of mobile laser scanning system when it worked under no GPS signal environment. Then it completed the application of this technology in the No.15 rail 3D completion surveying. Meanwhile a set of production process was made for the 3D completion surveying based on this kind of mobile 3D laser scanning technology. These products were also proved the efficiency of the new technology in the rail 3D completion surveying. Using mobile 3D laser scanning technology to complete underground rail completion surveying has been the first time in China until now. It can provide a reference for 3D measurement of rail completion surveying or the 3D completion surveying of other areas.

  9. Stop-and-go mode: sensor manipulation as essential as sensor development in terrestrial laser scanning.

    PubMed

    Lin, Yi; Hyyppä, Juha; Kukko, Antero

    2013-06-25

    This study was dedicated to illustrating the significance of sensor manipulation in the case of terrestrial laser scanning, which is a field now in quick development. In fact, this quickness was mainly rooted in the emergence of new sensors with better performance, while the implications of sensor manipulation have not been fully recognized by the whole community. For this technical gap, the stop-and-go mapping mode can be reckoned as one of the potential solution plans. Stop-and-go was first proposed to handle the low efficiency of traditional static terrestrial laser scanning, and then, it was re-emphasized to improve the stability of sample collections for the state-of-the-art technology of mobile laser scanning. This work reviewed the previous efforts of trying the stop-and-go mode for improving the performance of static and mobile terrestrial laser scanning and generalized their principles respectively. This work also analyzed its advantages compared to the fully-static and fully-kinematic terrestrial laser scanning, and suggested the plans with more automatic measures for raising the efficacy of terrestrial laser scanning. Overall, this literature review indicated that the stop-and-go mapping mode as a case with generic sense can verify the presumption of sensor manipulation as essential as sensor development.

  10. Stop-and-Go Mode: Sensor Manipulation as Essential as Sensor Development in Terrestrial Laser Scanning

    PubMed Central

    Lin, Yi; Hyyppä, Juha; Kukko, Antero

    2013-01-01

    This study was dedicated to illustrating the significance of sensor manipulation in the case of terrestrial laser scanning, which is a field now in quick development. In fact, this quickness was mainly rooted in the emergence of new sensors with better performance, while the implications of sensor manipulation have not been fully recognized by the whole community. For this technical gap, the stop-and-go mapping mode can be reckoned as one of the potential solution plans. Stop-and-go was first proposed to handle the low efficiency of traditional static terrestrial laser scanning, and then, it was re-emphasized to improve the stability of sample collections for the state-of-the-art technology of mobile laser scanning. This work reviewed the previous efforts of trying the stop-and-go mode for improving the performance of static and mobile terrestrial laser scanning and generalized their principles respectively. This work also analyzed its advantages compared to the fully-static and fully-kinematic terrestrial laser scanning, and suggested the plans with more automatic measures for raising the efficacy of terrestrial laser scanning. Overall, this literature review indicated that the stop-and-go mapping mode as a case with generic sense can verify the presumption of sensor manipulation as essential as sensor development. PMID:23799493

  11. Laser scanning microscopy of broad freezing interfaces with applications to biological cells

    NASA Astrophysics Data System (ADS)

    Neils, Christopher Martin

    2000-09-01

    A new, vertical cryostage was used for microscopic observation of broad-front freezing in aqueous solutions. This cryostage complements traditional studies of cell behavior and interface morphology in cryobiology. Traditional systems directionally solidify thin samples perpendicular to the optical axis. Thin samples confer thermal and optical advantages for video brightfield microscopy. However, sample thickness can affect the interface morphology. In the new cryostage, ice propagates parallel to the microscope optical axis. The sample cup is 1 cm tall and 1.5 cm in diameter, with insulated sides and a nitrogen-cooled base to freeze the solution upward. The top of the solution is warmed passively through a cover glass or immersion objective. The freezing solutions contain dilute fluorescein dye, which is visible where it is concentrated by exclusion from the ice. The stage is mounted on a confocal laser-scanning microscope, and thermal control and image capture routines are centralized in a LabView user interface. Filtered water, physiological saline, 9.5% glycerol, and 10% glycerol with PBS were frozen at rates between -2°C/min and -10°C/min and sequential images at one plane were captured. Images distinctly revealed a lamellar interface but could not resolve 3-D morphology. The average lamellar spacing was quantified using image analysis. Physiological saline was frozen in flat glass capillary tubes with 0.05 to 0.4 mm path length, mounted vertically to observe internal ice in cross-section. Lamellae were randomly oriented with respect to the glass, suggesting caution when measuring dendrite spacing in a horizontal cryostage. No correlation between capillary size and lamellar spacing was noted. Cell monolayers and synthetic membranes were mounted horizontally to let a well-developed ice front approach the layer broadly. In transparent membranes, ice-membrane interaction was visible until ice grew over and obscured the membrane. The vertical cryostage improved

  12. Railway Tunnel Clearance Inspection Method Based on 3D Point Cloud from Mobile Laser Scanning.

    PubMed

    Zhou, Yuhui; Wang, Shaohua; Mei, Xi; Yin, Wangling; Lin, Chunfeng; Hu, Qingwu; Mao, Qingzhou

    2017-09-07

    Railway tunnel clearance is directly related to the safe operation of trains and upgrading of freight capacity. As more and more railway are put into operation and the operation is continuously becoming faster, the railway tunnel clearance inspection should be more precise and efficient. In view of the problems existing in traditional tunnel clearance inspection methods, such as low density, slow speed and a lot of manual operations, this paper proposes a tunnel clearance inspection approach based on 3D point clouds obtained by a mobile laser scanning system (MLS). First, a dynamic coordinate system for railway tunnel clearance inspection has been proposed. A rail line extraction algorithm based on 3D linear fitting is implemented from the segmented point cloud to establish a dynamic clearance coordinate system. Second, a method to seamlessly connect all rail segments based on the railway clearance restrictions, and a seamless rail alignment is formed sequentially from the middle tunnel section to both ends. Finally, based on the rail alignment and the track clearance coordinate system, different types of clearance frames are introduced for intrusion operation with the tunnel section to realize the tunnel clearance inspection. By taking the Shuanghekou Tunnel of the Chengdu-Kunming Railway as an example, when the clearance inspection is carried out by the method mentioned herein, its precision can reach 0.03 m, and difference types of clearances can be effectively calculated. This method has a wide application prospects.

  13. Railway Tunnel Clearance Inspection Method Based on 3D Point Cloud from Mobile Laser Scanning

    PubMed Central

    Zhou, Yuhui; Wang, Shaohua; Mei, Xi; Yin, Wangling; Lin, Chunfeng; Mao, Qingzhou

    2017-01-01

    Railway tunnel clearance is directly related to the safe operation of trains and upgrading of freight capacity. As more and more railway are put into operation and the operation is continuously becoming faster, the railway tunnel clearance inspection should be more precise and efficient. In view of the problems existing in traditional tunnel clearance inspection methods, such as low density, slow speed and a lot of manual operations, this paper proposes a tunnel clearance inspection approach based on 3D point clouds obtained by a mobile laser scanning system (MLS). First, a dynamic coordinate system for railway tunnel clearance inspection has been proposed. A rail line extraction algorithm based on 3D linear fitting is implemented from the segmented point cloud to establish a dynamic clearance coordinate system. Second, a method to seamlessly connect all rail segments based on the railway clearance restrictions, and a seamless rail alignment is formed sequentially from the middle tunnel section to both ends. Finally, based on the rail alignment and the track clearance coordinate system, different types of clearance frames are introduced for intrusion operation with the tunnel section to realize the tunnel clearance inspection. By taking the Shuanghekou Tunnel of the Chengdu–Kunming Railway as an example, when the clearance inspection is carried out by the method mentioned herein, its precision can reach 0.03 m, and difference types of clearances can be effectively calculated. This method has a wide application prospects. PMID:28880232

  14. Three-dimensional imaging of the intact mouse cochlea by fluorescent laser scanning confocal microscopy

    PubMed Central

    MacDonald, Glen H.; Rubel, Edwin W

    2008-01-01

    The complex anatomy of the mammalian cochlea is most readily understood by representation in three-dimensions. However, the cochlea is often sectioned to minimize the effects of its anatomic complexity and optical properties on image acquisition by light microscopy. We have found that optical aberrations present in the decalcified cochlea can be greatly reduced by dehydration through graded ethanols followed by clearing with a mixture of 5 parts methyl salicylate and 3 parts benzyl benzoate (MSBB). Clearing the cochlea with MSBB enables acquisition of high-resolution images with multiple fluorescent labels, through the full volume of the cochlea by laser scanning confocal microscopy. The resulting images are readily applicable to three-dimensional morphometric analysis and volumetric visualizations. This method promises to be particularly useful for three-dimensional characterization of anatomy, innervation and expression of genes or proteins in the many new animal models of hearing and balance generated by genetic manipulation. Furthermore, the MSBB is compatible with most non-protein fluorophores used for histological labeling, and may be removed with traditional transitional solvents to allow subsequent epoxy embedding for sectioning. PMID:18573326

  15. Processing of airborne laser scanning data to generate accurate DTM for floodplain wetland

    NASA Astrophysics Data System (ADS)

    Szporak-Wasilewska, Sylwia; Mirosław-Świątek, Dorota; Grygoruk, Mateusz; Michałowski, Robert; Kardel, Ignacy

    2015-10-01

    Structure of the floodplain, especially its topography and vegetation, influences the overland flow and dynamics of floods which are key factors shaping ecosystems in surface water-fed wetlands. Therefore elaboration of the digital terrain model (DTM) of a high spatial accuracy is crucial in hydrodynamic flow modelling in river valleys. In this study the research was conducted in the unique Central European complex of fens and marshes - the Lower Biebrza river valley. The area is represented mainly by peat ecosystems which according to EU Water Framework Directive (WFD) are called "water-dependent ecosystems". Development of accurate DTM in these areas which are overgrown by dense wetland vegetation consisting of alder forest, willow shrubs, reed, sedges and grass is very difficult, therefore to represent terrain in high accuracy the airborne laser scanning data (ALS) with scanning density of 4 points/m2 was used and the correction of the "vegetation effect" on DTM was executed. This correction was performed utilizing remotely sensed images, topographical survey using the Real Time Kinematic positioning and vegetation height measurements. In order to classify different types of vegetation within research area the object based image analysis (OBIA) was used. OBIA allowed partitioning remotely sensed imagery into meaningful image-objects, and assessing their characteristics through spatial and spectral scale. The final maps of vegetation patches that include attributes of vegetation height and vegetation spectral properties, utilized both the laser scanning data and the vegetation indices developed on the basis of airborne and satellite imagery. This data was used in process of segmentation, attribution and classification. Several different vegetation indices were tested to distinguish different types of vegetation in wetland area. The OBIA classification allowed correction of the "vegetation effect" on DTM. The final digital terrain model was compared and examined

  16. Application of resistivity image profiling method and laser scanning to monitor landside

    NASA Astrophysics Data System (ADS)

    Liu, H.; Yang, C.

    2007-12-01

    Taiwan, located at the Western Pacific, bears the threats from both typhoons and earthquakes. The 921 earthquake resulted in the unstable ground so that typhoons or torrential rain could cause serious disasters. Currently, the hazard mitigation is the target of the authorities. However, using the traditional approaches not only wastes a lot of time but also is ineffectively. The deformation of slope terrain is detected by physical measured instrument traditionally. Collecting deformation data of tiltmeter and piezometer inner well drilling. A few of wells are limited by terrain and cost. The wells can not cover all landslide area. The results of analysis data are debated. The collapse slope once has more probabilistic collapse. Particularly designing engineering against natural calamities with debated conclusion and the rebuilt slope will be instable. This paper demonstrates the possibility of using resistivity image profiling method (RIP) and 3d laser scanning to monitor a landside at No.3 freeway of 85 km in Taiwan. The slope was rebuilt by grid-beam engineering, spraying concrete engineering and cut-slope engineering. The first, exploring underground substance by resistivity image profiling method . To obtain the destructive sliding position of slope, the range of slope with the same sliding position and groundwater data. Time-lapse RIP sections for different time period also indicate that the obvious resistivity change zones were limited under a strongest topography change surface.Fitting 3d laser scanner on suitable site for scanning research target. To analyze overlay scanning data by correcting the cloud-points with the different periods. The study utilizes the 3d scanning technology and geoelectric resistivity technology to obtain analysis information of slope probability and terrain deformation trend. The way of detecting deformation of rebuilt slope that combines RIP and 3D laser scanner is overall technology. The RIP detects the sensitive area of

  17. a New Approach for Segmentation-Based Texturing of Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Lari, Z.; Habib, A.

    2015-02-01

    In recent years, laser scanning systems have been recognized as a fast and accurate technology for the acquisition of high density spatial data. The advent of these systems has reduced the cost and increased the availability of accurate 3D data for mapping, modelling, and monitoring applications. The original laser scanning data does not explicitly provide meaningful information about the characteristics of the scanned surfaces. Therefore, reliable processing procedures are applied for information extraction from these datasets. However, the derived surfaces through laser scanning data processing cannot be effectively interpreted due to the lack of spectral information. To resolve this problem, a new texturing procedure is introduced in this paper to improve the interpretability of laser scanning-derived surfaces using spectral information from overlapping imagery. In this texturing approach, individual planar regions, derived through a laser scanning data segmentation procedure, are textured using the available imagery. This texturing approach, which aims to overcome the computational inefficiency of the previously-developed point-based texturing techniques, is implemented in three steps. In the first step, the visibility of the segmented planar regions in the available imagery is checked and a list of appropriate images for texturing each planar region is established. An occlusion detection procedure is then performed to identify the parts of the segmented regions which are occluding/being occluded by other regions in the field of view of the utilized images. In the second step, visible parts of planar regions are decomposed into parts which should be textured using individual images. Finally, a rendering procedure is performed to texture these parts using available images. Experimental results from real laser scanning dataset and overlapping imagery demonstrate the feasibility of the proposed approach for texturing laser scanning-derived surfaces using images.

  18. Modeling streamflow from coupled airborne laser scanning and acoustic Doppler current profiler data

    USGS Publications Warehouse

    Norris, Lam; Kean, Jason W.; Lyon, Steve

    2016-01-01

    The rating curve enables the translation of water depth into stream discharge through a reference cross-section. This study investigates coupling national scale airborne laser scanning (ALS) and acoustic Doppler current profiler (ADCP) bathymetric survey data for generating stream rating curves. A digital terrain model was defined from these data and applied in a physically based 1-D hydraulic model to generate rating curves for a regularly monitored location in northern Sweden. Analysis of the ALS data showed that overestimation of the streambank elevation could be adjusted with a root mean square error (RMSE) block adjustment using a higher accuracy manual topographic survey. The results of our study demonstrate that the rating curve generated from the vertically corrected ALS data combined with ADCP data had lower errors (RMSE = 0.79 m3/s) than the empirical rating curve (RMSE = 1.13 m3/s) when compared to streamflow measurements. We consider these findings encouraging as hydrometric agencies can potentially leverage national-scale ALS and ADCP instrumentation to reduce the cost and effort required for maintaining and establishing rating curves at gauging station sites similar to the Röån River.

  19. The application of dermal papillary rings in dermatology by in vivo confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Xiang, W. Z.; Xu, A. E.; Xu, J.; Bi, Z. G.; Shang, Y. B.; Ren, Q. S.

    2010-08-01

    Confocal laser scanning microscopy (CLSM) allows noninvasive visualization of human skin in vivo, without needing to fix or section the tissue. Melanocytes and pigmented keratinocytes at the level of the basal layer form bright dermal papillary rings which are readily amenable to identify in confocal images. Our purpose was to explore the role of dermal papillary rings in assessment of lesion location, the diagnosis, differential diagnosis of lesions and assessment of therapeutic efficacy by in vivo CLSM. Seventy-one patients were imaged with the VivaScope 1500 reflectance confocal microscope provided by Lucid, Inc. The results indicate that dermal papillary rings can assess the location of lesion; the application of dermal papillary rings can provide diagnostic support and differential diagnosis for vitiligo, nevus depigmentosus, tinea versicolor, halo nevus, common nevi, and assess the therapeutic efficacy of NBUVB phototherapy plus topical 0.1 percent tacrolimus ointment for vitiligo. In conclusion, our findings indicate that the dermal papillary rings play an important role in the assessment the location of lesion, diagnosis, differential diagnosis of lesions and assessment of therapeutic efficacy by in vivo CLSM. CLSM may be a promising tool for noninvasive examination in dermatology. However, larger studies are needed to expand the application of dermal papillary rings in dermatology.

  20. Confocal laser scanning microscopic investigation of ultrasonic, sonic, and rotary sealer placement techniques

    PubMed Central

    Nikhil, Vineeta; Singh, Renuka

    2013-01-01

    Background: Sealers are used to attain an impervious seal between the core material and root canal walls. Aim: To compare the depth and percentage of sealer penetration with three different placement techniques using confocal laser scanning microscopy as the evaluative tool. Materials and Methods: Root canals of 30 single-rooted teeth were prepared to a size of F3 and AH plus sealer with Rhodamine B was applied with Ultlrasonic file (Gr-1), lentulospiral (Gr-2), and Endoactivator (Gr-3). Canals were obturated with gutta-percha. The roots were sectioned at the 3 and 6-mm levels from the apical foramen and were examined on a confocal microscope. Results: A statistical significant differences among Gr-1, Gr-2, and Gr-3 were found at the 3 and 6-mm level (P < 0.05; ANOVA-Tukey tests) for the depth and percentage of sealer penetration except for Gr-1 and Gr-2 at 3-mm level. Gr-1 showed maximum mean depth of penetration (810 μm) and maximum mean percentage of sealer penetration (64.5) while Gr-3 showed minimum mean depth of penetration (112.7 μm) and minimum mean percentage of sealer penetration (26.7). Conclusion: Depth and percentage of penetration of sealer is influenced by the type of placement technique and by the root canal level with penetration decreasing apically. PMID:23956528

  1. Evaluation of confocal laser scanning microscopy for enumeration of virus-like particles in aquatic systems.

    PubMed

    Peduzzi, Peter; Agis, Martin; Luef, Birgit

    2013-07-01

    Abundances of virus-like particles (VLPs, mostly bacteriophages) are high in aquatic environments; therefore, techniques for precise enumeration are essential in ecological monitoring. VLPs were determined after staining with SYBR Gold by conventional epifluorescence microscopy and compared to enumerations performed by confocal laser scanning microscopy (CLSM). In order to assess the potential of CLSM for viral direct counts (VDCs), we processed samples from different freshwater and marine systems. Optical sectioning by CLSM and production of an overlay picture of multiple scans enables the often uneven whole investigated filter area to be brought to the plane of focus. This allows for subsequent image analysis of digitally created high-quality images. Another advantage using the CLSM was that the short spot excitation of the stain via laser beam minimized fading of the stain. The VDC results show that there is no significant difference between the two methods. Regarding the known difficulties of viral abundance estimates on particulate material, CLSM was further applied to enumerate VLPs on a small set of marine transparent exopolymeric particles sampled from the Atlantic Ocean. Our data suggest that CLSM is a useful tool to count viruses in water samples as well as attached to certain types of aquatic aggregates.

  2. Three-dimensional imaging of porous media using confocal laser scanning microscopy.

    PubMed

    Shah, S M; Crawshaw, J P; Boek, E S

    2017-02-01

    In the last decade, imaging techniques capable of reconstructing three-dimensional (3-D) pore-scale model have played a pivotal role in the study of fluid flow through complex porous media. In this study, we present advances in the application of confocal laser scanning microscopy (CLSM) to image, reconstruct and characterize complex porous geological materials with hydrocarbon reservoir and CO2 storage potential. CLSM has a unique capability of producing 3-D thin optical sections of a material, with a wide field of view and submicron resolution in the lateral and axial planes. However, CLSM is limited in the depth (z-dimension) that can be imaged in porous materials. In this study, we introduce a 'grind and slice' technique to overcome this limitation. We discuss the practical and technical aspects of the confocal imaging technique with application to complex rock samples including Mt. Gambier and Ketton carbonates. We then describe the complete workflow of image processing to filtering and segmenting the raw 3-D confocal volumetric data into pores and grains. Finally, we use the resulting 3-D pore-scale binarized confocal data obtained to quantitatively determine petrophysical pore-scale properties such as total porosity, macro- and microporosity and single-phase permeability using lattice Boltzmann (LB) simulations, validated by experiments. © 2016 The Authors Journal of Microscopy © 2016 Royal Microscopical Society.

  3. Coupling airborne laser scanning and acoustic Doppler current profiler data to model stream rating curves

    NASA Astrophysics Data System (ADS)

    Lam, N.; Lyon, S. W.; Kean, J. W.

    2015-12-01

    The rating curve enables the translation of water depth into discharge through a reference cross section. Errors in estimating stream channel geometry can therefore result in increased discharge uncertainty. This study investigates coupling national-scale airborne laser scanning (ALS) and acoustic Doppler current profiler (ADCP) bathymetric survey data for generating stream rating curves. Specifically, stream channel geometries were generated from coupled ALS and ADCP scanning data collected for a well-monitored site located in northern Sweden. These data were used to define the hydraulic geometry required by a physically-based 1-D hydraulic model. The results of our study demonstrate that the effects of potential scanning data errors on the model generated rating curve were less than the uncertainties due to stream gauging measurements and empirical rating curve fitting. Further analysis of the ALS data showed that an overestimation of the streambank elevation (the main scanning data error) was primarily due to vegetation that could be adjusted for through a root-mean-square-error bias correction. We consider these findings encouraging as hydrometric agencies can potentially leverage national-scale ALS and ADCP instrumentation to reduce the cost and effort required for maintaining and establish rating curves at gauging stations.

  4. Geoarchaeological site documentation and analysis of 3D data derived by terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Hoffmeister, D.; Zellmann, S.; Kindermann, K.; Pastoors, A.; Lang, U.; Bubenzer, O.; Weniger, G.-C.; Bareth, G.

    2014-05-01

    Terrestrial laser scanning was conducted to document and analyse sites of geoarchaeological interest in Jordan, Egypt and Spain. In those cases, the terrestrial laser scanner LMS-Z420i from Riegl was used in combination with an accurate RTK-GPS for georeferencing of the point clouds. Additionally, local surveying networks were integrated by established transformations and used for indirect registration purposes. All data were integrated in a workflow that involves different software and according results. The derived data were used for the documentation of the sites by accurate plans and cross-sections. Furthermore, the 3D data were analysed for geoarchaeological research problems, such as volumetric determinations, the ceiling thickness of a cave and lighting simulations based on path tracing. The method was reliable in harsh environmental conditions, but the weight of the instrument, the measuring time and the minimum measurement distance were a drawback. However, generally an accurate documentation of the sites was possible. Overall, the integration in a 3D GIS is easily possible by the accurate georeference of the derived data. In addition, local survey results are also implemented by the established transformations. Enhanced analyses based on the derived 3D data shows promising results.

  5. Fluorescent human lung macrophages analyzed by spectral confocal laser scanning microscopy and multispectral cytometry.

    PubMed

    Pauly, John L; Allison, Erin M; Hurley, Edward L; Nwogu, Chukwumere E; Wallace, Paul K; Paszkiewicz, Geraldine M

    2005-06-01

    Numerous highly fluorescent macrophages (MPhi), designated "smoker cells," exist in the lungs of smokers and subjects who have quit smoking within 5 years. The brightly fluorescent MPhi, however, are not present in the lungs of never smokers. Some investigators have speculated that the intense fluorescence of the MPhi is due to smoke-induced changes in the autofluorescence of naturally occurring (i.e., endogenous) compounds (e.g., NADP). In contrast, other researchers have theorized that the fluorescence is due to the uptake of tobacco smoke particulates (i.e., "tar"). Studies reported herein were undertaken to test the hypothesis that the origin of the MPhi fluorescence could be profiled with the novel technologies afforded by spectral confocal laser scanning microscopy (sCLSM) and multispectral cytometry (MSC). To this end, spectral emissions were obtained by sCLSM of optical sections of live MPhi isolated from fresh surgically excised human lung tissue and in air-dried lung tissue imprints. Confirmation of spectral profiles of these single cell observations was obtained in population studies with the use of high-throughput MSC in which multispectral analyses were performed with three different lasers. Proof of concept experiments demonstrated that relatively nonfluorescent MPhi from the lungs of nonsmokers became fluorescent upon short-term ex vivo exposure to tobacco smoke tar. Summarily, the studies reported herein document that the fluorescence of human lung MPhi is due to tobacco tar. Copyright (c) 2005 Wiley-Liss, Inc.

  6. Visualization and quantification of healthy and carious dentin structure using confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Kimura, Yuichi; Wilder-Smith, Petra B. B.; Krasieva, Tatiana B.; Arrastia-Jitosho, Anna-Marie A.; Liaw, Lih-Huei L.; Matsumoto, Koukichi; Berns, Michael W.

    1996-04-01

    In this study, a fluorescence technique was developed for visualization of dentin using confocal laser scanning microscopy (CLSM). Eighteen extracted human teeth were used: 13 showing no clinical signs of caries and 5 with visually apparent decay. Preliminary study: All teeth were horizontally sectioned to approx. 200 micrometers thickness and pre-treated as follows: no pretreatment; vacuum only; ultrasonication only; sodium hypochlorite (NaOCl) only; vacuum and NaOCl; ultrasonication and NaOCl; or vacuum, ultrasonication and NaOCl. Samples were stained with Rhodamine 123 fluorescent dye at a concentration of 10-5 M in phosphate buffer saline for 1 to 24 hours. Caries study: Dentin surfaces, some with pre-existing caries, were visualized using CLSM. Most dentin tubules in sound dentin appeared open using CLSM, but most dentin tubules in carious dentin appeared closed or narrowed. Surface images obtained using CLSM were similar to those seen by SEM, but additional subsurface imaging was possible using CLSM at depth intervals of 1 micrometers to a depth of 30 - 50 micrometers . This technique shows good potential for non-invasive surface and subsurface imaging of dentin structures.

  7. Automated quantification of distributed landslide movement using circular tree trunks extracted from terrestrial laser scan data

    NASA Astrophysics Data System (ADS)

    Conner, Jeremy C.; Olsen, Michael J.

    2014-06-01

    This manuscript presents a novel algorithm to automatically detect landslide movement in a forested area using displacements of tree trunks distributed across the landslide surveyed repeatedly using terrestrial laser scanning (TLS). Common landslide monitoring techniques include: inclinometers, global position system (GPS), and interferometric synthetic aperture radar (InSAR). While these techniques provide valuable data for monitoring landslides, they can be difficult to apply with adequate spatial or temporal resolution needed to understand complex landslides, specifically in forested environments. Comparison of the center coordinates (determined via least-squares fit of the TLS data) of a cross section of the tree trunk between consecutive surveys enable quantification of landslide movement rates, which can be used to analyze patterns of landslide displacement. The capabilities of this new methodology were tested through a case-study analyzing the Johnson Creek Landslide, a complex, quick moving coastal landslide, which has proven difficult to monitor using other techniques. A parametric analysis of fitting thresholds was also conducted to determine the reliability of tree trunk displacements calculated and the number of features that were extracted. The optimal parameters in selecting trees for movement analysis were found to be less than 1.5 cm for the RMS residuals of the circle fit and less than 1.0 cm for the difference in the calculated tree radii between epochs.

  8. Development of a high speed laser scanning confocal microscope with an acquisition rate up to 200 frames per second.

    PubMed

    Choi, S; Kim, P; Boutilier, R; Kim, M Y; Lee, Y J; Lee, H

    2013-10-07

    There has been an increasing interest for observing fast biological phenomena such as cell movements in circulations and action potentials. The laser scanning confocal microscopy offers a good spatial resolution and optical sectioning ability to observe various in vivo animal models. We developed a high speed laser scanning confocal microscope capable of acquiring 512 by 512 pixel images at 200 fps (frames per second). We have incorporated a fast rotating polygonal scanning mirror with 128 facets for the X-axis scanner. In order to increase the throughput of the Y-axis scanner, we applied a bi-directional scanning method for vertical scanning. This made it possible to scan along the Y-axis two times during each scanner motion cycle. For the image acquisition, we used a custom photomultiplier tube amplifier with a broad frequency band. In addition, custom imaging software was written for the new microscope. In order to verify the acquisition speed of the developed confocal microscope, a resolution target moving at a series of constant speeds and a sedated mouse with slight movements due to heartbeats were observed. By comparing successive frames, the frame acquisition speeds were calculated.

  9. Reliable fusion of knee bone laser scans to establish ground truth for cartilage thickness measurement

    NASA Astrophysics Data System (ADS)

    Chang, Ming-Ching; Trinh, Nhon H.; Fleming, Braden C.; Kimia, Benjamin B.

    2010-03-01

    We are interested in establishing ground truth data for validating morphology measurements of human knee cartilage from MR imaging. One promising approach is to compare the high-accuracy 3D laser scans of dissected cadaver knees before and after the dissolution of their cartilage. This requires an accurate and reliable method to fuse the individual laser scans from multiple views of the cadaver knees. Unfortunately existing methods using Iterative Closest Point (ICP) algorithm from off-the-shell packages often yield unreliable fusion results. We identify two major sources of variation: (i) the noise in depth measurements of the laser scans is significantly high and (ii) the use of point-to-point correspondence in ICP is not suitable due to sampling variation in the laser scans. We resolve the first problem by performing adaptive Gaussian smoothing on each individual laser scans prior to the fusion. For the second problem, we construct a surface mesh from the point cloud of each scan and adopt a point-to-mesh ICP scheme for pairwise alignment. The complete surface mesh is constructed by fusing all the scans in the order maximizing mutual overlaps. In experiments on 6 repeated scanning trials of a cadaver knee, our approach reduced the alignment error of point-to-point ICP by 30% and reduced coefficient of variation (CV) of cartilage thickness measurements from 5% down to 1.4%, significantly improving the method's repeatability.

  10. Deformation Monitoring of Motorway Underpasses Using Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Puente, I.; González-Jorge, H.; Riveiro, B.; Arias, P.

    2012-07-01

    voussoirs ranging between 1 mm and 5 mm. These deformations are under the tolerances predicted by the structure and confirm the success in the construction works developed. The laser scanning and the post-processing algorithms here developed appear as an easy methodology to make deformation monitoring of underpass structures and guarantee the load capacity of the structure.

  11. Assessment of DNA replication in central nervous system by Laser Scanning Cytometry

    NASA Astrophysics Data System (ADS)

    Lenz, Dominik; Mosch, Birgit; Bocsi, Jozsef; Arendt, Thomas; Tárnok, Attila

    2004-07-01

    μIn neurons of patients with Alzheimers's disease (AD) signs of cell cycle re-entry as well as polyploidy have been reported1, 2, indicating that the entire or a part of the genome of the neurons is duplicated before its death but mitosis is not initiated so that the cellular DNA content remains tetraploid. It was concluded, that this imbalance is the direct cause of the neuronal loss in AD3. Manual counting of polyploidal cells is possible but time consuming and possibly statistically insufficient. The aim of this study was to develop an automated method that detects the neuronal DNA content abnormalities with Laser Scanning Cytometry (LSC).Frozen sections of formalin-fixed brain tissue of AD patients and control subjects were labelled with anti-cyclin B and anti-NeuN antibodies. Immunolabelling was performed using Cy5- and Cy2-conjugated secondary antibodies and biotin streptavidin or tyramid signal amplification. In the end sections of 20m thickness were incubated with propidium iodide (PI) (50μg/ml) and covered on slides. For analysis by the LSC PI was used as trigger. Cells identified as neurons by NeuN expression were analyzed for cyclin B expression. Per specimen data of at least 10,000 neurons were acquired. In the frozen brain sections an automated quantification of the amount of nuclear DNA is possible with LSC. The DNA ploidy as well as the cell cycle distribution can be analyzed. A high number of neurons can be scanned and the duration of measuring is shorter than a manual examination. The amount of DNA is sufficiently represented by the PI fluorescence to be able to distinguish between eu- and polyploid neurons.

  12. Terrestrial laser scanning used to detect asymmetries in boat hulls

    NASA Astrophysics Data System (ADS)

    Roca-Pardiñas, Javier; López-Alvarez, Francisco; Ordóñez, Celestino; Menéndez, Agustín; Bernardo-Sánchez, Antonio

    2012-01-01

    We describe a methodology for identifying asymmetries in boat hull sections reconstructed from point clouds captured using a terrestrial laser scanner (TLS). A surface was first fit to the point cloud using a nonparametric regression method that permitted the construction of a continuous smooth surface. Asymmetries in cross-sections of the surface were identified using a bootstrap resampling technique that took into account uncertainty in the coordinates of the scanned points. Each reconstructed section was analyzed to check, for a given level of significance, that it was within the confidence interval for the theoretical symmetrical section. The method was applied to the study of asymmetries in a medium-sized yacht. Identified were differences of up to 5 cm between the real and theoretical sections in some parts of the hull.

  13. Plot-scale soil loss estimation with laser scanning and photogrammetry methods

    NASA Astrophysics Data System (ADS)

    Szabó, Boglárka; Szabó, Judit; Jakab, Gergely; Centeri, Csaba; Szalai, Zoltán; Somogyi, Árpád; Barsi, Árpád

    2017-04-01

    Structure from Motion (SfM) is an automatic feature-matching algorithm, which nowadays is widely used tool in photogrammetry for geoscience applications. SfM method and parallel terrestrial laser scanning measurements are widespread and they can be well accomplished for quantitative soil erosion measurements as well. Therefore, our main scope was soil erosion characterization quantitatively and qualitatively, 3D visualization and morphological characterization of soil-erosion-dynamics. During the rainfall simulation, the surface had been measured and compared before and after the rainfall event by photogrammetry (SfM - Structure from Motion) and laser scanning (TLS - Terrestrial Laser Scanning) methods. The validation of the given results had been done by the caught runoff and the measured soil-loss value. During the laboratory experiment, the applied rainfall had 40 mm/h rainfall intensity. The size of the plot was 0.5 m2. The laser scanning had been implemented with Faro Focus 3D 120 S type equipment, while the SfM shooting had been carried out by 2 piece SJCAM SJ4000+ type, 12 MP resolution and 4K action cams. The photo-reconstruction had been made with Agisoft Photoscan software, while evaluation of the resulted point-cloud from laser scanning and photogrammetry had been implemented partly in CloudCompare and partly in ArcGIS. The resulted models and the calculated surface changes didn't prove to be suitable for estimating soil-loss, only for the detection of changes in the vertical surface. The laser scanning resulted a quite precise surface model, while the SfM method is affected by errors at the surface model due to other factors. The method needs more adequate technical laboratory preparation.

  14. Automated laser registration in image-guided surgery: evaluation of the correlation between laser scan resolution and navigation accuracy.

    PubMed

    Marmulla, R; Lüth, T; Mühling, J; Hassfeld, S

    2004-10-01

    Markerless patient registration based on the facial skin surface makes logistics prior to image-guided surgery much easier, as it is not necessary to place and measure registration markers. A laser scan registration of the surgical site takes the place of conventional marker-based registration. In a clinical study, the stability and accuracy of markerless patient registration was evaluated in 12 patients. Intraoral titanium markers served as targets for the infrared-pointer of the navigation system in order to check the accuracy of the markerless registration process. The correlation between laser scan resolution and navigation accuracy was checked using seven different laser scan resolutions (a cloud of 300,000 laser scan points down to 3750 laser scan points of the surgical site). The markerless patient registration was successful as long as high laser scan resolution was used (30,000 laser scan points and more): the titanium markers were detected with a mean deviation of 1.1 +/- 0.2 mm. Low resolution laser scans (6000 laser scan points of the surgical site and less) revealed inaccuracies up to 6 mm.

  15. Reversible patterning of poly(methylmethacrylate) doped with disperse Red 1 by laser scanning

    SciTech Connect

    Tuma, J.; Lyutakov, O.; Huttel, I.; Slepicka, P.; Svorcik, V.

    2013-09-07

    Thin poly(methylmethacrylate) films doped by or covalently attached to disperse Red 1 acrylate (DR1) were patterned by laser scanning and simultaneous sample movement in confocal microscope. In both cases, periodical structure due to Marangoni effect is created. Modified polymers surfaces were analyzed by FTIR spectroscopy, X-ray photoelectron spectroscopy, and atomic force microscopy. After first stage of patterning, second stage with sample movement in perpendicular direction was applied. Depending on the method of DR1 dotation fishnet structure is obtained or pattern structure disappears. In the latter case, reversibility of pattern formation and erasure by laser scanning was studied.

  16. A single-photon counting detector for increased sensitivity in two-photon laser scanning microscopy

    PubMed Central

    Benninger, Richard K.P.; Ashby, William J.; Ring, Elisabeth A.; Piston, David W.

    2009-01-01

    We present the use and characterization of a photon counting detector for increased sensitivity at low signal levels in fluorescence laser scanning microscopy (LSM). Conventional LSM PMT detectors utilize analog current integration and thus suffer from excessive noise at low signal levels, introduced during current measurement. In this letter we describe the implementation of a fast single-photon counting (SPC) detector on a conventional two-photon laser scanning microscope and detail its use in imaging low fluorescence intensities. We show that for a low photon flux, the SPC detector is shot-noise limited and thus provides increased detection sensitivity compared to analog current integration. PMID:19079484

  17. Lateral resolution enhancement of laser scanning microscopy by a higher-order radially polarized mode beam

    NASA Astrophysics Data System (ADS)

    Kozawa, Yuichi; Hibi, Terumasa; Sato, Aya; Horanai, Hibiki; Kurihara, Makoto; Hashimoto, Nobuyuki; Yokoyama, Hiroyuki; Nemoto, Tomomi; Sato, Shunichi

    2011-08-01

    We demonstrate that the lateral resolution of confocal laser scanning microscopy is dramatically improved by a higher-order radially polarized (HRP) beam with six concentric rings. This beam was generated simply by inserting liquid crystal devices in front of an objective lens. An HRP beam visualized aggregated 0.17 μm beads individually and is also applicable to biological imaging. This method can extend the capability of conventional laser scanning microscopes without modification of the system, with the exception of the addition of the liquid crystal devices in the optical path.

  18. Quantification of retinal pigment epithelial phenotypic variation using laser scanning cytometry

    PubMed Central

    Fujikawa, A.; Oltjen, S.L.; Smit-McBride, Z.; Braunschweig, D.

    2010-01-01

    Purpose Quantifying phenotypic variation at the level of protein expression (variegation) within populations of retinal pigment epithelium (RPE) cells may be important in the study of pathologies associated with this variation. The lack of quantitative methods for examining single cells, however, and the variable presence of pigment and/or lipofuscin complicate this experimental goal. We have applied the technique of laser scanning cytometry (LSC) to paraffin sections of mouse and human eyes to evaluate the utility of LSC for these measurements. Methods Mouse eyes were perfusion fixed in 4% paraformaldehyde and embedded in paraffin. Postmortem human eyes were fixed and dissected to obtain a 9-mm punch, which was then embedded in paraffin. A laser scanning cytometer equipped with violet, argon, and helium-neon lasers and the detectors for blue, green, and long red were used to record the fluorescence of each individual cell at all three wavelengths. Raw data were recorded and processed using the WinCyte software. Individual nuclei were identified by the fluorescence of the 4’,6-diamidino-2-phenylindole (DAPI) nuclear counterstain. Next, RPE cells were uniquely identified in the green channel using an anti-retinal pigment epithelium-specific protein 65 kDa (anti-RPE65) monoclonal antibody with an Alexa Fluor 488-labeled secondary antibody. Mn-superoxide dismutase (MnSOD) was quantified in the long-red channel using an anti-MnSOD antibody and an Alexa Fluor 647-labeled secondary antibody. MnSOD+ and RPE65+ cells exhibited peaks in the plot of fluorescence intensity versus cell number, which could be characterized by the mean fluorescence intensity (MFI), the coefficient of variation (CV), and the percentage of total RPE cells that were also labeled for MnSOD. Results RPE cells can be uniquely identified in human and mouse paraffin sections by immunolabeling with anti-RPE65 antibody. A second antigen, such as MnSOD, can then be probed only within this set of RPE

  19. Delineating Beach and Dune Morphology from Massive Terrestrial Laser Scanning Data Using the Generic Mapping Tools

    NASA Astrophysics Data System (ADS)

    Zhou, X.; Wang, G.; Yan, B.; Kearns, T.

    2016-12-01

    Terrestrial laser scanning (TLS) techniques have been proven to be efficient tools to collect three-dimensional high-density and high-accuracy point clouds for coastal research and resource management. However, the processing and presenting of massive TLS data is always a challenge for research when targeting a large area with high-resolution. This article introduces a workflow using shell-scripting techniques to chain together tools from the Generic Mapping Tools (GMT), Geographic Resources Analysis Support System (GRASS), and other command-based open-source utilities for automating TLS data processing. TLS point clouds acquired in the beach and dune area near Freeport, Texas in May 2015 were used for the case study. Shell scripts for rotating the coordinate system, removing anomalous points, assessing data quality, generating high-accuracy bare-earth DEMs, and quantifying beach and sand dune features (shoreline, cross-dune section, dune ridge, toe, and volume) are presented in this article. According to this investigation, the accuracy of the laser measurements (distance from the scanner to the targets) is within a couple of centimeters. However, the positional accuracy of TLS points with respect to a global coordinate system is about 5 cm, which is dominated by the accuracy of GPS solutions for obtaining the positions of the scanner and reflector. The accuracy of TLS-derived bare-earth DEM is primarily determined by the size of grid cells and roughness of the terrain surface for the case study. A DEM with grid cells of 4m x 1m (shoreline by cross-shore) provides a suitable spatial resolution and accuracy for deriving major beach and dune features.

  20. Local intracellular ion measurements with luminescent indicators using confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Opitz, N.; Merten, E.; Acker, H.

    1995-09-01

    Ion sensitive fluoroprobes such as BCECF (pH) and FURA-II (Ca2+) are frequently used indicators for determination of ion activities in single cells and subcellular compartments, e.g. by video enhanced or video intensified microscopy. Moreover, using confocal laser scanning microscopy (CLSM) with its inherent potential for noninvasive optical sectioning of cells and tissues and subsequent 3D image reconstruction, intracellular ion topographies can be monitored via pseudocolor encoded ratio imaging from pixel to pixel enabling in vivo measurements of dynamic intracellular processes. Regardless of the degree of spatial resolution, reliable qualtitative determinations essentially depend on accurate calibration of the intracellularly entrapped fluoroprobe. Calibration is either established on the basis of a whole cell or within a more or less extended subcellular compartment and the characteristics are displayed as concentration encoded pseudocolor bar within the image frame. This calibration is assumed to be valid for other cellular compartments and, in case of ion imaging, it is even thought to be valid for every single pixel of the complete pixel field. However, the assumption of a topographically invariant intracellular calibration requires a reliable behavior of the intracellularly applied indicator. This intracellular integrity of the dyes often does not seem to exist since intracellular calibration curves considerably deviate from in vitro calibration characteristics. Deviations may be due to intracellular interactions of indicator molecules with cytoplasmic macromolecules, e.g. proteins, resulting in spectral distortions and/or sensitivity deficits as demonstrated by the indicators BCECF and FURA-RED (a FURA-II analogue) or to intracellular redistribution of the indicator as exemplified by pH measurements using carboxy-SNARF-1. Consequences of these investigations as well as further potential interferences are discussed with special respect to ion imaging

  1. Imaging of oxidative stress at subcellular level by confocal laser scanning microscopy after fluorescent derivatization of cellular carbonyls.

    PubMed Central

    Pompella, A.; Comporti, M.

    1993-01-01

    Confocal laser scanning fluorescence microscopy plus image videoanalysis was used to visualize the tissue areas and the subcellular sites first involved by oxidative stress and lipid peroxidation, in the well-established experimental model of lipid peroxidation induced by haloalkane intoxication in the liver cell. The fluorescent reagent 3-hydroxy-2-naphthoic acid hydrazide was employed to derivativize the carbonyl functions originating from the lipoperoxidative process in situ, in liver cryostat sections from in vivo intoxicated rats, as well as in isolated hepatocytes exposed in vitro to the pro-oxidant action of haloalkanes. The results obtained indicate that: 1) the detection of fluorescent derivatives of carbonyls indeed offers a gain in sensitivity, 2) haloalkane-induced lipid peroxidation in hepatocytes primarily involves the perinuclear endoplasmic reticulum, whereas the plasma membrane and the nuclear compartment are unaffected, and 3) lipid peroxidation also induces an increase of liver autofluorescence. Images Figure 2 Figure 4 PMID:8494040

  2. Penetration of tamoxifen citrate loaded ethosomes and liposomes across human skin: a comparative study with confocal laser scanning microscopy.

    PubMed

    Sarwa, Khomendra K; Suresh, Preeti K; Rudrapal, Mithun; Verma, Vinod K

    2014-01-01

    In the present study, ethosomal and liposomal formulations containing tamoxifen citrate were prepared and evaluated for their penetration properties in human cadaver skin using Franz diffusion cell and confocal laser scanning microscope (CLSM). The results clearly revealed that ethosomal vesicles showed a better drug permeation profile than that of liposomal vesicles. In addition, low fluorescence intensity in CLSM was recorded with liposomes as compared to ethosomes, indicating lower cumulative amount of drug permeation from liposomal vesicles. Furthermore, CLSM showed uniform fluorescence intensity across the entire depth of skin in ethosomal treatment, indicating high penetrability of ethosomal vesicles through human cadaver skin. In contrast, low penetrability of conventional liposomal vesicles was recorded as penetration was limited to the 7(th) section (i.e. upper epidermis layer) of skin as evident from visualization of intact liposomal vesicles in CLSM.

  3. Recommendations for the design and the installation of large laser scanning microscopy systems

    NASA Astrophysics Data System (ADS)

    Helm, P. Johannes

    2012-03-01

    Laser Scanning Microscopy (LSM) has since the inventions of the Confocal Scanning Laser Microscope (CLSM) and the Multi Photon Laser Scanning Microscope (MPLSM) developed into an essential tool in contemporary life science and material science. The market provides an increasing number of turn-key and hands-off commercial LSM systems, un-problematic to purchase, set up and integrate even into minor research groups. However, the successful definition, financing, acquisition, installation and effective use of one or more large laser scanning microscopy systems, possibly of core facility character, often requires major efforts by senior staff members of large academic or industrial units. Here, a set of recommendations is presented, which are helpful during the process of establishing large systems for confocal or non-linear laser scanning microscopy as an effective operational resource in the scientific or industrial production process. Besides the description of technical difficulties and possible pitfalls, the article also illuminates some seemingly "less scientific" processes, i.e. the definition of specific laboratory demands, advertisement of the intention to purchase one or more large systems, evaluation of quotations, establishment of contracts and preparation of the local environment and laboratory infrastructure.

  4. Initial Tests and Accuracy Assesment of a Compact Mobile Laser Scanning System

    NASA Astrophysics Data System (ADS)

    Julge, K.; Ellmann, A.; Vajakas, T.; Kolka, R.

    2016-06-01

    Mobile laser scanning (MLS) is a faster and cost-effective alternative to static laser scanning, even though there is a slight trade-off in accuracy. This contribution describes a compact mobile laser scanning system mounted on a vehicle. The technical parameters of the used system components, i.e. a small LIDAR sensor Velodyne VLP-16 and a dual antenna GNSS/INS system Advanced Navigation Spatial Dual, are reviewed, along with the integration of these components for spatial data acquisition. Calculation principles of 3D coordinates from the real-time data of all the involved sensors are discussed. The field tests were carried out in a controlled environment of a parking lot and at different velocities. Experiments were carried out to test the ability of the GNSS/INS system to cope with difficult conditions, e.g. sudden movements due to cornering or swerving. The accuracy of the resulting MLS point cloud is evaluated with respect to high-accuracy static terrestrial laser scanning data. Problems regarding combining LIDAR, GNSS and INS sensors are outlined, as well as the initial accuracy assessments. Initial tests revealed errors related to insufficient quality of inertial data and a need for the trajectory post-processing calculations. Although this study was carried out while the system was mounted on a car, there is potential for operating the system on an unmanned aerial vehicle, all-terrain vehicle or in a backpack mode due to its relatively compact size.

  5. MAMMALIAN APOPTOSIS IN WHOLE NEONATAL OVARIES USING CONFOCAL LASER SCANNING MICROSCOPY

    EPA Science Inventory

    MAMMALIAN APOPTOSIS IN WHOLE NEONATAL OVARIES USING CONFOCAL LASER SCANNING MICROSCOPY

    Robert M. Zucker Susan C. Jeffery and Sally D. Perreault

    Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Prot...

  6. An attempt of the metadata standard creation for the technology of mobile laser scanning in Poland

    NASA Astrophysics Data System (ADS)

    Falkowski, P.; Parzyński, Z.; Uchański, J.; Uchański, Ł.

    2011-12-01

    Authors of the paper are presenting the attempt of the metadata standard creation for the technology of Mobile Laser Scanning. The research leading to the result presented in the publication was based on practical aspects of works realized within the usage of Mobile Laser Scanning measurements on the territory of Poland and theoretical issues concerned at Warsaw University of Technology in the area of metadata and standard creation. Usage of Mobile Laser Scanning gives the great advantage of acquisition impressive sets of data in short period of time finding their potential in the fields heritage preservation, architecture, deformation monitoring and industrial applications. In relation to the variety of applications and elements which needs to be concerned as the crucial parts of data sets like precise characteristic of the quality of acquired data authors attempt to create a metadata standard enabling potential prioritization and selection of data into normative which could in the future became a basis for regular normative creation considering this sort of measurements. Until now no sort of Laser Scanning tools has received its own standard despite the fact it is getting more and more necessary also by the fact of its growing popularization and variety of usage in different fields of life.

  7. MAMMALIAN APOPTOSIS IN WHOLE NEONATAL OVARIES USING CONFOCAL LASER SCANNING MICROSCOPY

    EPA Science Inventory

    MAMMALIAN APOPTOSIS IN WHOLE NEONATAL OVARIES USING CONFOCAL LASER SCANNING MICROSCOPY

    Robert M. Zucker Susan C. Jeffery and Sally D. Perreault

    Reproductive Toxicology Division, National Health and Environmental Effects Research Laboratory, U.S. Environmental Prot...

  8. Orientation of airborne laser scanning point clouds with multi-view, multi-scale image blocks.

    PubMed

    Rönnholm, Petri; Hyyppä, Hannu; Hyyppä, Juha; Haggrén, Henrik

    2009-01-01

    Comprehensive 3D modeling of our environment requires integration of terrestrial and airborne data, which is collected, preferably, using laser scanning and photogrammetric methods. However, integration of these multi-source data requires accurate relative orientations. In this article, two methods for solving relative orientation problems are presented. The first method includes registration by minimizing the distances between of an airborne laser point cloud and a 3D model. The 3D model was derived from photogrammetric measurements and terrestrial laser scanning points. The first method was used as a reference and for validation. Having completed registration in the object space, the relative orientation between images and laser point cloud is known. The second method utilizes an interactive orientation method between a multi-scale image block and a laser point cloud. The multi-scale image block includes both aerial and terrestrial images. Experiments with the multi-scale image block revealed that the accuracy of a relative orientation increased when more images were included in the block. The orientations of the first and second methods were compared. The comparison showed that correct rotations were the most difficult to detect accurately by using the interactive method. Because the interactive method forces laser scanning data to fit with the images, inaccurate rotations cause corresponding shifts to image positions. However, in a test case, in which the orientation differences included only shifts, the interactive method could solve the relative orientation of an aerial image and airborne laser scanning data repeatedly within a couple of centimeters.

  9. a Study about Terrestrial Laser Scanning for Reconstruction of Precast Concrete to Support Qlassic Assessment

    NASA Astrophysics Data System (ADS)

    Aziz, M. A.; Idris, K. M.; Majid, Z.; Ariff, M. F. M.; Yusoff, A. R.; Luh, L. C.; Abbas, M. A.; Chong, A. K.

    2016-09-01

    Nowadays, terrestrial laser scanning shows the potential to improve construction productivity by measuring the objects changes using real-time applications. This paper presents the process of implementation of an efficient framework for precast concrete using terrestrial laser scanning that enables contractors to acquire accurate data and support Quality Assessment System in Construction (QLASSIC). Leica Scanstation C10, black/white target, Autodesk Revit and Cyclone software were used in this study. The results were compared with the dimensional of based model precast concrete given by the company as a reference with the AutoDesk Revit model from the terrestrial laser scanning data and conventional method (measuring tape). To support QLASSIC, the tolerance dimensions of cast in-situ & precast elements is +10mm / -5mm. The results showed that the root mean square error for a Revit model is 2.972mm while using measuring tape is 13.687mm. The accuracy showed that terrestrial laser scanning has an advantage in construction jobs to support QLASSIC.

  10. Accuracy of laser-scanned models compared to plaster models and cone-beam computed tomography.

    PubMed

    Kim, Jooseong; Heo, Giseon; Lagravère, Manuel O

    2014-05-01

    To compare the accuracy of measurements obtained from the three-dimensional (3D) laser scans to those taken from the cone-beam computed tomography (CBCT) scans and those obtained from plaster models. Eighteen different measurements, encompassing mesiodistal width of teeth and both maxillary and mandibular arch length and width, were selected using various landmarks. CBCT scans and plaster models were prepared from 60 patients. Plaster models were scanned using the Ortho Insight 3D laser scanner, and the selected landmarks were measured using its software. CBCT scans were imported and analyzed using the Avizo software, and the 26 landmarks corresponding to the selected measurements were located and recorded. The plaster models were also measured using a digital caliper. Descriptive statistics and intraclass correlation coefficient (ICC) were used to analyze the data. The ICC result showed that the values obtained by the three different methods were highly correlated in all measurements, all having correlations>0.808. When checking the differences between values and methods, the largest mean difference found was 0.59 mm±0.38 mm. In conclusion, plaster models, CBCT models, and laser-scanned models are three different diagnostic records, each with its own advantages and disadvantages. The present results showed that the laser-scanned models are highly accurate to plaster models and CBCT scans. This gives general clinicians an alternative to take into consideration the advantages of laser-scanned models over plaster models and CBCT reconstructions.

  11. RAYSAW: a log sawing simulator for 3D laser-scanned hardwood logs

    Treesearch

    R. Edward. Thomas

    2013-01-01

    Laser scanning of hardwood logs provides detailed high-resolution imagery of log surfaces. Characteristics such as sweep, taper, and crook, as well as most surface defects, are visible to the eye in the scan data. In addition, models have been developed that predict interior knot size and position based on external defect information. Computerized processing of...

  12. D Model of AL Zubarah Fortress in Qatar - Terrestrial Laser Scanning VS. Dense Image Matching

    NASA Astrophysics Data System (ADS)

    Kersten, T.; Mechelke, K.; Maziull, L.

    2015-02-01

    In September 2011 the fortress Al Zubarah, built in 1938 as a typical Arabic fortress and restored in 1987 as a museum, was recorded by the HafenCity University Hamburg using terrestrial laser scanning with the IMAGER 5006h and digital photogrammetry for the Qatar Museum Authority within the framework of the Qatar Islamic Archaeology and Heritage Project. One goal of the object recording was to provide detailed 2D/3D documentation of the fortress. This was used to complete specific detailed restoration work in the recent years. From the registered laser scanning point clouds several cuttings and 2D plans were generated as well as a 3D surface model by triangle meshing. Additionally, point clouds and surface models were automatically generated from digital imagery from a Nikon D70 using the open-source software Bundler/PMVS2, free software VisualSFM, Autodesk Web Service 123D Catch beta, and low-cost software Agisoft PhotoScan. These outputs were compared with the results from terrestrial laser scanning. The point clouds and surface models derived from imagery could not achieve the same quality of geometrical accuracy as laser scanning (i.e. 1-2 cm).

  13. Orientation of Airborne Laser Scanning Point Clouds with Multi-View, Multi-Scale Image Blocks

    PubMed Central

    Rönnholm, Petri; Hyyppä, Hannu; Hyyppä, Juha; Haggrén, Henrik

    2009-01-01

    Comprehensive 3D modeling of our environment requires integration of terrestrial and airborne data, which is collected, preferably, using laser scanning and photogrammetric methods. However, integration of these multi-source data requires accurate relative orientations. In this article, two methods for solving relative orientation problems are presented. The first method includes registration by minimizing the distances between of an airborne laser point cloud and a 3D model. The 3D model was derived from photogrammetric measurements and terrestrial laser scanning points. The first method was used as a reference and for validation. Having completed registration in the object space, the relative orientation between images and laser point cloud is known. The second method utilizes an interactive orientation method between a multi-scale image block and a laser point cloud. The multi-scale image block includes both aerial and terrestrial images. Experiments with the multi-scale image block revealed that the accuracy of a relative orientation increased when more images were included in the block. The orientations of the first and second methods were compared. The comparison showed that correct rotations were the most difficult to detect accurately by using the interactive method. Because the interactive method forces laser scanning data to fit with the images, inaccurate rotations cause corresponding shifts to image positions. However, in a test case, in which the orientation differences included only shifts, the interactive method could solve the relative orientation of an aerial image and airborne laser scanning data repeatedly within a couple of centimeters. PMID:22454569

  14. Evaluation of a laser scanning sensor for variable-rate tree sprayer development

    USDA-ARS?s Scientific Manuscript database

    Accurate canopy measurement capabilities are prerequisites to automate variable-rate sprayers. A 270° radial range laser scanning sensor was tested for its scanning accuracy to detect tree canopy profiles. Signals from the laser sensor and a ground speed sensor were processed with an embedded comput...

  15. QUANTITATIVE ASSESSMENT OF BETA CELL APOPTOSIS AND CELL COMPOSITION OF ISOLATED, UNDISRUPTED HUMAN ISLETS BY LASER SCANNING CYTOMETRY

    PubMed Central

    Todorov, Ivan; Nair, Indu; Avakian-Mansoorian, Alina; Rawson, Jeffrey; Omori, Keiko; Ito, Taihei; Valiente, Luis; Iglesias-Meza, Itzia; Orr, Chris; Shiang, Keh D.; Ferreri, Kevin; Al-Abdullah, Ismail H.; Mullen, Yoko; Kandeel, Fouad

    2010-01-01

    Background Assays for assessing human islet cell quality which provide results prior to transplantation would be very beneficial to improving outcomes for islet transplantation therapy. Parameters such as percent beta cell apoptosis and cell composition are found to vary markedly between different islet preparations, and may serve as markers of islet quality. We have developed fluorescence-based assays using laser scanning cytometry (LSC) for assessing beta cell apoptosis and islet cell composition on serial sections of intact isolated islets. Methods Isolated human islets were fixed in formalin and embedded in paraffin. Serial sections were immunostained for the pancreatic hormones, acinar and ductal cell markers. DNA fragmentation was used to label apoptotic cells. Stained cells were quantified using an iCys laser scanning cytometer. Results Islet preparations from 102 human pancreatic islet isolations were analyzed. For the whole set of islet preparations we found a mean islet cell composition of 54.5±1.2% insulin positive; 33.9±1.2% glucagon; 12.1±0.7% somatostatin and 1.5±0.2% pancreatic polypeptide positive cells. The apoptotic beta cells were 2.85±0.4% with a range of 0.27% to 18.3%. The percentage of apoptotic beta cells correlated well (p<0.0001, n=59) with results obtained in vivo by transplantation of the corresponding islets in diabetic NODscid mice. Conclusions The analysis of whole, non-dissociated islets for cell composition and beta cell apoptosis using LSC is giving reliable and reproducible results and could be done both before islet transplantation, as well as on preserved cell blocks at any future time. Thus, they can be a powerful tool for islet quality assessment. PMID:20697327

  16. Laser Scanning for 3D Object Characterization: Infrastructure for Exploration and Analysis of Vegetation Signatures

    NASA Astrophysics Data System (ADS)

    Koenig, K.; Höfle, B.

    2012-04-01

    Mapping and characterization of the three-dimensional nature of vegetation is increasingly gaining in importance. Deeper insight is required for e.g. forest management, biodiversity assessment, habitat analysis, precision agriculture, renewable energy production or the analysis of interaction between biosphere and atmosphere. However the potential of 3D vegetation characterization has not been exploited so far and new technologies are needed. Laser scanning has evolved into the state-of-the-art technology for highly accurate 3D data acquisition. By now several studies indicated a high value of 3D vegetation description by using laser data. The laser sensors provide a detailed geometric presentation (geometric information) of scanned objects as well as a full profile of laser energy that was scattered back to the sensor (radiometric information). In order to exploit the full potential of these datasets, profound knowledge on laser scanning technology for data acquisition, geoinformation technology for data analysis and object of interest (e.g. vegetation) for data interpretation have to be joined. A signature database is a collection of signatures of reference vegetation objects acquired under known conditions and sensor parameters and can be used to improve information extraction from unclassified vegetation datasets. Different vegetation elements (leaves, branches, etc.) at different heights above ground with different geometric composition contribute to the overall description (i.e. signature) of the scanned object. The developed tools allow analyzing tree objects according to single features (e.g. echo width and signal amplitude) and to any relation of features and derived statistical values (e.g. ratio of laser point attributes). For example, a single backscatter cross section value does not allow for tree species determination, whereas the average echo width per tree segment can give good estimates. Statistical values and/or distributions (e.g. Gaussian

  17. Three-dimensional visualization and quantitation of fibrin in solid tumors by confocal laser scanning microscopy.

    PubMed

    Biggerstaff, J; Amirkhosravi, A; Francis, J L

    1997-10-01

    Fibrin forms part of the stroma essential for growth of solid tumors. Anticoagulants reduce primary tumor growth and tumor metastasis in murine and some human tumors. These effects may be partly mediated by reduction of intra-tumor fibrin, although there are no quantitative data to support this hypothesis. We therefore evaluated the effect of warfarin on fibrin deposition in a subcutaneously (s.c.) implanted murine tumor using confocal laser scanning microscopy (CLSM). AJ mice received no treatment (n = 6) or sodium warfarin (3.5 mg/L in drinking water, n = 5). All animals received 2 x 10(6) syngeneic Neuro2a neuroblastoma cells s.c. After 14 days, primary tumors were excised and placed in liquid nitrogen. Warfarin treatment resulted in a small, but significant (P < 0.05), decrease in wet tumor weight. Frozen sections (20 microns) were incubated with goat anti-mouse fibrin(ogen) or normal goat serum (isotypic control) and stained with FITC-conjugated rabbit anti-goat antibody. Using a Multiprobe 2001 CLSM (Molecular Dynamics, Sunnyvale, CA), 20 serial optical sections were taken from five, randomly chosen, high power fields (60x objective) for each slide. A threshold excluded all fluorescence except that from structural components within the tumor stroma (fibrin). The volume of fibrin in each section series was determined, and the percentage of tumor volume occupied by fibrin calculated. Intra- and inter-assay variation were assessed on serial frozen tumor sections from an untreated animal. The percentage fibrin volume was not significantly different among or within experiments, indicating that the procedure was reproducible. In controls, the median (range) volume occupied by fibrin was 8.1% (2.4-22.3%), whereas in anticoagulated animals, this was reduced to 3.7% (0.4-14.0%; P < 0.001). This is the first quantitative demonstration that warfarin reduces fibrin deposition in solid tumors. We conclude that three-dimensional CLSM is useful for the quantitation of

  18. Laser scanning measurements on trees for logging harvesting operations.

    PubMed

    Zheng, Yili; Liu, Jinhao; Wang, Dian; Yang, Ruixi

    2012-01-01

    Logging harvesters represent a set of high-performance modern forestry machinery, which can finish a series of continuous operations such as felling, delimbing, peeling, bucking and so forth with human intervention. It is found by experiment that during the process of the alignment of the harvesting head to capture the trunk, the operator needs a lot of observation, judgment and repeated operations, which lead to the time and fuel losses. In order to improve the operation efficiency and reduce the operating costs, the point clouds for standing trees are collected with a low-cost 2D laser scanner. A cluster extracting algorithm and filtering algorithm are used to classify each trunk from the point cloud. On the assumption that every cross section of the target trunk is approximate a standard circle and combining the information of an Attitude and Heading Reference System, the radii and center locations of the trunks in the scanning range are calculated by the Fletcher-Reeves conjugate gradient algorithm. The method is validated through experiments in an aspen forest, and the optimized calculation time consumption is compared with the previous work of other researchers. Moreover, the implementation of the calculation result for automotive capturing trunks by the harvesting head during the logging operation is discussed in particular.

  19. Laser Scanning Measurements on Trees for Logging Harvesting Operations

    PubMed Central

    Zheng, Yili; Liu, Jinhao; Wang, Dian; Yang, Ruixi

    2012-01-01

    Logging harvesters represent a set of high-performance modern forestry machinery, which can finish a series of continuous operations such as felling, delimbing, peeling, bucking and so forth with human intervention. It is found by experiment that during the process of the alignment of the harvesting head to capture the trunk, the operator needs a lot of observation, judgment and repeated operations, which lead to the time and fuel losses. In order to improve the operation efficiency and reduce the operating costs, the point clouds for standing trees are collected with a low-cost 2D laser scanner. A cluster extracting algorithm and filtering algorithm are used to classify each trunk from the point cloud. On the assumption that every cross section of the target trunk is approximate a standard circle and combining the information of an Attitude and Heading Reference System, the radii and center locations of the trunks in the scanning range are calculated by the Fletcher-Reeves conjugate gradient algorithm. The method is validated through experiments in an aspen forest, and the optimized calculation time consumption is compared with the previous work of other researchers. Moreover, the implementation of the calculation result for automotive capturing trunks by the harvesting head during the logging operation is discussed in particular. PMID:23012543

  20. Shining new light on braided rivers: capturing grain-to-reach scale morphodynamics with terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Brasington, J.; Williams, R. D.; Vericat, D.; Hicks, M.; Goodsell, B.

    2011-12-01

    The last decade has witnessed a technological revolution in the acquisition of geospatial data. These developments have profound implications for the practice of river science, creating a step-change in the dimensionality, resolution and precision of measurement of fluvial forms and processes. The pace of change has been remarkable; typical datasets of channel geometry have grown from cross-sections containing a few hundred survey observations, to airborne lidar surveys incorporating millions of points. With wide-area terrestrial laser scans comprising tens of billions observations now set to emerge, our data perspectives have been expanded by seven orders of magnitude. Such rapid modernization brings with it new challenges and necessitates the development of novel data management strategies, original algorithms to process dense 3d data, higher dimensional spatial metrics and innovative simulation methods to make optimal use of this rich vein of information. In this paper we describe a field-to-product methodology which aims to address these challenges and has been used to generate an unparalleled dataset capturing the morphological evolution of a labile gravel-bed braided river through a continuous sequence of floods between Oct 2009 and May 2010. These data were generated using a data-fusion approach that combines close-range terrestrial laser scanning with bathymetric data derived from non-metric aerial photography. Surveys were acquired over a 2.5 x 0.7 km reach of the Rees River; a piedmont braided system draining a highland catchment of Southern Alps of NZ. During a 10 month field campaign through the summer flood season, this study reach was resurveyed systematically after each competent flood event. Multi-scale DEMs were derived that capture the spatial distribution of facies and morphological changes at high precision. Results indicate that over 80% of the reach was subject to significant erosion or deposition, with a complex pattern of response to the

  1. Graph Structure-Based Simultaneous Localization and Mapping Using a Hybrid Method of 2D Laser Scan and Monocular Camera Image in Environments with Laser Scan Ambiguity

    PubMed Central

    Oh, Taekjun; Lee, Donghwa; Kim, Hyungjin; Myung, Hyun

    2015-01-01

    Localization is an essential issue for robot navigation, allowing the robot to perform tasks autonomously. However, in environments with laser scan ambiguity, such as long corridors, the conventional SLAM (simultaneous localization and mapping) algorithms exploiting a laser scanner may not estimate the robot pose robustly. To resolve this problem, we propose a novel localization approach based on a hybrid method incorporating a 2D laser scanner and a monocular camera in the framework of a graph structure-based SLAM. 3D coordinates of image feature points are acquired through the hybrid method, with the assumption that the wall is normal to the ground and vertically flat. However, this assumption can be relieved, because the subsequent feature matching process rejects the outliers on an inclined or non-flat wall. Through graph optimization with constraints generated by the hybrid method, the final robot pose is estimated. To verify the effectiveness of the proposed method, real experiments were conducted in an indoor environment with a long corridor. The experimental results were compared with those of the conventional GMappingapproach. The results demonstrate that it is possible to localize the robot in environments with laser scan ambiguity in real time, and the performance of the proposed method is superior to that of the conventional approach. PMID:26151203

  2. Graph Structure-Based Simultaneous Localization and Mapping Using a Hybrid Method of 2D Laser Scan and Monocular Camera Image in Environments with Laser Scan Ambiguity.

    PubMed

    Oh, Taekjun; Lee, Donghwa; Kim, Hyungjin; Myung, Hyun

    2015-07-03

    Localization is an essential issue for robot navigation, allowing the robot to perform tasks autonomously. However, in environments with laser scan ambiguity, such as long corridors, the conventional SLAM (simultaneous localization and mapping) algorithms exploiting a laser scanner may not estimate the robot pose robustly. To resolve this problem, we propose a novel localization approach based on a hybrid method incorporating a 2D laser scanner and a monocular camera in the framework of a graph structure-based SLAM. 3D coordinates of image feature points are acquired through the hybrid method, with the assumption that the wall is normal to the ground and vertically flat. However, this assumption can be relieved, because the subsequent feature matching process rejects the outliers on an inclined or non-flat wall. Through graph optimization with constraints generated by the hybrid method, the final robot pose is estimated. To verify the effectiveness of the proposed method, real experiments were conducted in an indoor environment with a long corridor. The experimental results were compared with those of the conventional GMappingapproach. The results demonstrate that it is possible to localize the robot in environments with laser scan ambiguity in real time, and the performance of the proposed method is superior to that of the conventional approach.

  3. Ultrasonic enrichment of microspheres for ultrasensitive biomedical analysis in confocal laser-scanning fluorescence detection

    NASA Astrophysics Data System (ADS)

    Wiklund, M.; Toivonen, J.; Tirri, M.; Hänninen, P.; Hertz, H. M.

    2004-07-01

    An ultrasonic particle concentrator based on a standing-wave hemispherical resonator is combined with confocal laser-scanning fluorescence detection. The goal is to perform ultrasensitive biomedical analysis by concentration of biologically active microspheres. The standing-wave resonator consists of a 4 MHz focusing ultrasonic transducer combined with the optically transparent plastic bottom of a disposable 96-well microplate platform. The ultrasonic particle concentrator collects suspended microspheres into dense, single-layer aggregates at well-defined positions in the sample vessel of the microplate, and the fluorescence from the aggregates is detected by the confocal laser-scanning system. The biochemical properties of the system are investigated using a microsphere-based human thyroid stimulating hormone assay.

  4. In vivo visualization of microneedle conduits in human skin using laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Bal, S.; Kruithof, A. C.; Liebl, H.; Tomerius, M.; Bouwstra, J.; Lademann, J.; Meinke, M.

    2010-03-01

    Solid microneedles enhance the penetration of drugs into the viable skin but little is known about the geometry of the conduits in vivo. Therefore, laser scanning microscopy was used to visualize the conduits of a microneedle system with needles at a length of 300 μm in 6 healthy subjects over a period of time. The model drug, a fluorescent dye was applied before and after piercing. Laser scanning microscopy was evaluated as being an excellent method to monitor the geometry and closure of the conduits over time. The used microneedle system was evaluated as suitable to enhance the transport of model drugs into the viable epidermis without bleeding and a short closure time of the conduits at the skin surface.

  5. Embedding complementary imaging data in laser scanning microscopy micrographs by reversible watermarking.

    PubMed

    Dragoi, Ioan-Catalin; Stanciu, Stefan G; Hristu, Radu; Coanda, Henri-George; Tranca, Denis E; Popescu, Marius; Coltuc, Dinu

    2016-04-01

    Complementary laser scanning microscopy micrographs are considered as pairs consisting in a master image (MI) and a slave image (SI), the latter with potential for facilitating the interpretation of the MI. We propose a strategy based on reversible watermarking for embedding a lossy compressed version of the SI into the MI. The use of reversible watermarking ensures the exact recovery of the host image. By storing and/or transmitting the watermarked MI in a single file, the information contained in both images that constitute the pair is made available to a potential end-user, which simplifies data association and transfer. Examples are presented using support images collected by two complementary techniques, confocal scanning laser microscopy and transmission laser scanning microscopy, on Hematoxylin and Eosin stained tissue fragments. A strategy for minimizing the watermarking distortions of the MI, while preserving the content of the SI, is discussed in detail.

  6. Embedding complementary imaging data in laser scanning microscopy micrographs by reversible watermarking

    PubMed Central

    Dragoi, Ioan-Catalin; Stanciu, Stefan G.; Hristu, Radu; Coanda, Henri-George; Tranca, Denis E.; Popescu, Marius; Coltuc, Dinu

    2016-01-01

    Complementary laser scanning microscopy micrographs are considered as pairs consisting in a master image (MI) and a slave image (SI), the latter with potential for facilitating the interpretation of the MI. We propose a strategy based on reversible watermarking for embedding a lossy compressed version of the SI into the MI. The use of reversible watermarking ensures the exact recovery of the host image. By storing and/or transmitting the watermarked MI in a single file, the information contained in both images that constitute the pair is made available to a potential end-user, which simplifies data association and transfer. Examples are presented using support images collected by two complementary techniques, confocal scanning laser microscopy and transmission laser scanning microscopy, on Hematoxylin and Eosin stained tissue fragments. A strategy for minimizing the watermarking distortions of the MI, while preserving the content of the SI, is discussed in detail. PMID:27446641

  7. Standalone Terrestrial Laser Scanning for Efficiently Capturing Aec Buildings for As-Built Bim

    NASA Astrophysics Data System (ADS)

    Bassier, M.; Vergauwen, M.; Van Genechten, B.

    2016-06-01

    With the increasing popularity of as-built building models for the architectural, engineering and construction (AEC) industry, the demand for highly accurate and dense point cloud data is rising. The current data acquisition methods are labour intensive and time consuming. In order to compete with indoor mobile mapping systems (IMMS), surveyors are now opting to use terrestrial laser scanning as a standalone solution. However, there is uncertainty about the accuracy of this approach. The emphasis of this paper is to determine the scope for which terrestrial laser scanners can be used without additional control. Multiple real life test cases are evaluated in order to identify the boundaries of this technique. Furthermore, this research presents a mathematical prediction model that provides an indication of the data accuracy given the project dimensions. This will enable surveyors to make informed discussions about the employability of terrestrial laser scanning without additional control in mid to large-scale projects.

  8. A multiphoton laser scanning microscope setup for transcranial in vivo brain imaging on mice

    NASA Astrophysics Data System (ADS)

    Nase, Gabriele; Helm, P. Johannes; Reppen, Trond; Ottersen, Ole Petter

    2005-12-01

    We describe a multiphoton laser scanning microscope setup for transcranial in vivo brain imaging in mice. The modular system is based on a modified industrial standard Confocal Scanning Laser Microscope (CSLM) and is assembled mainly from commercially available components. A special multifunctional stage, which is optimized for both laser scanning microscopic observation and preparative animal surgery, has been developed and built. The detection unit includes a highly efficient photomultiplier tube installed in a Peltier-cooled thermal box shielding the detector from changes in room temperature and from distortions caused by external electromagnetic fields. The images are recorded using a 12-bit analog-to-digital converter. Depending on the characteristics of the staining, individual nerve cells can be imaged down to at least 100μm below the intact cranium and down to at least 200μm below the opened cranium.

  9. Automated planimetric quality control in high accuracy airborne laser scanning surveys

    NASA Astrophysics Data System (ADS)

    Vosselman, George

    2012-11-01

    With the increasing point densities of airborne laser scanning surveys, the applications of the generated point clouds have evolved from the production of digital terrain models to 3D modelling of a wide variety of objects. Likewise in quality control procedures criteria for height accuracy are extended with measures to describe the planimetric accuracy. This paper introduces a measure for the potential accuracy of outlining objects in a point cloud. It describes how this accuracy can be verified with the use of ridge lines of gable roofs in strip overlaps. Because of the high accuracy of modern laser scanning surveys, the influence of roof tiles onto the estimation of ridge lines is explicitly modelled. New selection criteria are introduced that allow an automated, reliable and accurate extraction of ridge lines from point clouds. The applicability of the procedure is demonstrated in a pilot project in an area covering 100,000 ha with around 20 billion points.

  10. An entropy-based filtering approach for airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Zeng, Zhe; Wan, Jiaxin; Liu, Hui

    2016-03-01

    Parameter-tuning is a challenging task when generating digital terrain models from airborne laser scanning (light detection and ranging, LiDAR) data. To address this issue, this paper presents a filtering method for near-infrared laser scanning data that exploits the principle of entropy maximization as the optimization objective. The proposed approach generates ground elevation of point cloud by constructing a triangulated irregular network, calculates the entropy of the elevation from different parts, and automatically separates ground and non-ground points by the principle of entropy maximization. Experimental results from different ground surfaces show that the proposed entropy-based filtering method can effectively extract bare-earth points from the point cloud without adjusting thresholds.

  11. Impact of spatial correlations on the surface estimation based on terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Jurek, Tobias; Kuhlmann, Heiner; Holst, Christoph

    2017-09-01

    In terms of high precision requested deformation analyses, evaluating laser scan data requires the exact knowledge of the functional and stochastic model. If this is not given, a parameter estimation leads to insufficient results. Simulating a laser scanning scene provides the knowledge of the exact functional model of the surface. Thus, it is possible to investigate the impact of neglecting spatial correlations in the stochastic model. Here, this impact is quantified through statistical analysis. The correlation function, the number of scanning points and the ratio of colored noise in the measurements determine the covariances in the simulated observations. It is shown that even for short correlation lengths of less than 10 cm and a low ratio of colored noise the global test as well as the parameter test are rejected. This indicates a bias and inconsistency in the parameter estimation. These results are transferable to similar tasks of laser scanner based surface approximation.

  12. New method for sperm evaluation by 3-dimensional laser scanning microscopy in different laboratory animal species.

    PubMed

    Weber, Klaus; Waletzky, Alexander; Fendl, Diana; Ordóñez, Patricia; Takawale, Pradeep; Hein, Felix; Riedel, Wolfram; König, Andres; Kunze, Marc; Leoni, Anne-Laure; Rivera, Javier; Quirici, Roberto; Romano, Ivano; Paepke, Susanne; Okazaki, Yoshimasa; Hardisty, Jerry F

    2014-01-01

    Sperm analysis is one of the end points in reproductive toxicology studies. Different methods for quantitative sperm analysis have been described. For qualitative morphological sperm analysis, either such techniques or smears of sperm and histological sperm staging are in use. Any of these methods provides morphological results on a light microscopy level. Laser scanning microscopy is a technique using a focused laser for scanning an object. The Olympus 3D Laser Scanning Microscope LEXT OLS4000 with optional possibilities of differential interference contrast provides a microscopic method for visualizing microasperities, which are far beyond the resolving power of a typical light or laser microscope. This technique was applied to sperm of mice, rats, rabbits, and cynomolgus monkeys at magnifications up to ×17 090. The obtained images are comparable to those of a scanning electron microscope under relatively low-power magnifications. Measurements on sperm parameters were taken by an integrated image analysis software tool. Abnormalities were easily detectable.

  13. An Automatic Algorithm for Minimizing Anomalies and Discrepancies in Point Clouds Acquired by Laser Scanning Technique

    NASA Astrophysics Data System (ADS)

    Bordin, Fabiane; Gonzaga, Luiz, Jr.; Galhardo Muller, Fabricio; Veronez, Mauricio Roberto; Scaioni, Marco

    2016-06-01

    Laser scanning technique from airborne and land platforms has been largely used for collecting 3D data in large volumes in the field of geosciences. Furthermore, the laser pulse intensity has been widely exploited to analyze and classify rocks and biomass, and for carbon storage estimation. In general, a laser beam is emitted, collides with targets and only a percentage of emitted beam returns according to intrinsic properties of each target. Also, due interferences and partial collisions, the laser return intensity can be incorrect, introducing serious errors in classification and/or estimation processes. To address this problem and avoid misclassification and estimation errors, we have proposed a new algorithm to correct return intensity for laser scanning sensors. Different case studies have been used to evaluate and validated proposed approach.

  14. Medical applications of three-dimensional and four-dimensional laser scanning of facial morphology

    NASA Astrophysics Data System (ADS)

    Sadler, Lewis L.; Chen, Xiaoming; Figueroa, Alvaro A.; Aduss, Howard

    1991-04-01

    Two-degrees offreedom laser scanning devices offer the advantage ofspeed in data acquisition over three-degrees offreedom devices. Data acquisition on patients especially children requires speed in data gathering instantaneous verification ofdata integrity and more than two degrees offreedom to adequately describe morphology. A technique to generate a pseudo-third degree of freedom scan will be presented. An additional benefit of the technique is the ability to compare data acquired at different times.

  15. UNDERSTANDING THE EFFECTS OF SURFACTANT ADDITION ON RHEOLOGY USING LASER SCANNING CONFOCAL MICROSCOPY

    SciTech Connect

    White, T

    2007-05-08

    The effectiveness of three dispersants to modify rheology was examined using rheology measurements and laser scanning confocal microscopy (LSCM) in simulated waste solutions. All of the dispersants lowered the yield stress of the slurries below the baseline samples. The rheology curves were fitted reasonably to a Bingham Plastic model. The three-dimensional LSCM images of simulants showed distinct aggregates were greatly reduced after the addition of dispersants leading to a lowering of the yield stress of the simulated waste slurry solutions.

  16. Automatic concrete cracks detection and mapping of terrestrial laser scan data

    NASA Astrophysics Data System (ADS)

    Rabah, Mostafa; Elhattab, Ahmed; Fayad, Atef

    2013-12-01

    Terrestrial laser scanning has become one of the standard technologies for object acquisition in surveying engineering. The high spatial resolution of imaging and the excellent capability of measuring the 3D space by laser scanning bear a great potential if combined for both data acquisition and data compilation. Automatic crack detection from concrete surface images is very effective for nondestructive testing. The crack information can be used to decide the appropriate rehabilitation method to fix the cracked structures and prevent any catastrophic failure. In practice, cracks on concrete surfaces are traced manually for diagnosis. On the other hand, automatic crack detection is highly desirable for efficient and objective crack assessment. The current paper submits a method for automatic concrete cracks detection and mapping from the data that was obtained during laser scanning survey. The method of cracks detection and mapping is achieved by three steps, namely the step of shading correction in the original image, step of crack detection and finally step of crack mapping and processing steps. The detected crack is defined in a pixel coordinate system. To remap the crack into the referred coordinate system, a reverse engineering is used. This is achieved by a hybrid concept of terrestrial laser-scanner point clouds and the corresponding camera image, i.e. a conversion from the pixel coordinate system to the terrestrial laser-scanner or global coordinate system. The results of the experiment show that the mean differences between terrestrial laser scan and the total station are about 30.5, 16.4 and 14.3 mms in x, y and z direction, respectively.

  17. An automated method to register airborne and terrestrial laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Zang, Yufu; Dong, Zhen; Huang, Ronggang

    2015-11-01

    Laser scanning techniques have been widely used to capture three-dimensional (3D) point clouds of various scenes (e.g. urban scenes). In particular, airborne laser scanning (ALS) and mobile laser scanning (MLS), terrestrial laser scanning (TLS) are effective to capture point clouds from top or side view. Registering the complimentary point clouds captured by ALS and MLS/TLS provides an aligned data source for many purposes (e.g. 3D reconstruction). Among these MLS can be directly geo-referenced to ALS according to the equipped position systems. For small scanning areas or dense building areas, TLS is used instead of MLS. However, registering ALS and TLS datasets suffers from poor automation and robustness because of few overlapping areas and sparse corresponding geometric features. A robust method for the registration of TLS and ALS datasets is proposed, which has four key steps. (1) extracts building outlines from TLS and ALS data sets independently; (2) obtains the potential matching pairs of outlines according to the geometric constraints between building outlines; (3) constructs the Laplacian matrices of the extracted building outlines to model the topology between the geometric features; (4) calculates the correlation coefficients of the extracted geometric features by decomposing the Laplacian matrices into the spectral space, providing correspondences between the extracted features for coarse registration. Finally, the multi-line adjustment strategy is employed for the fine registration. The robustness and accuracy of the proposed method are verified using field data, demonstrating a reliable and stable solution to accurately register ALS and TLS datasets.

  18. SAR Satellite Images and Terrestrial Laser Scanning in Forest Damages Mapping in Finland

    NASA Astrophysics Data System (ADS)

    Karjalainen, Mika; Kaasalainen, Sanna; Hyyppa, Juha; Holopainen, Markus; Lyytikainen-Saarenmaa, Paivi; Krooks, Anssi; Jaakkola, Anttoni

    2010-12-01

    Forests are of high importance for the Finnish economy and environment. Forests inventories should not only provide information about the volume of growing stock, but also about the health status of forests, which is an indicator of the annual growth of forests and Carbon balance. One of the forest damage types is defoliation, which causes forest growth reduction and consequently potentially economical losses to the forest owners, but can be seen as an environmental indicator also. For example, in the past ten years, extensive and persistent needle defoliation caused by insects has been observed in the areas of Palokangas and Outokumpu in Eastern Finland. It is expected that the insect outbreaks are becoming more common and new species of insects may be spreading out in Finland due to the climate warming. Traditionally the intensity of needle defoliation has been estimated using visual observations, which are prone to errors and their areal extent is limited. Therefore, remote sensing can be seen as a potential tool for mapping defoliation. In this study, both Terrestrial Laser Scanning data and SAR satellite images have been exploited. On the one hand, Terrestrial Laser Scanning provides means to rapidly and objectively measure critical forest related information. On the other hand, SAR satellite images enable wide-area mapping and constant monitoring, which would be impossible in Finland using optical satellite images due to the cloudiness. The fusion of Laser scanning and SAR information could make a difference in forest health mapping. In this paper, preliminary results of the estimation of the needle defoliation intensity based on Terrestrial Laser Scanning and ERS and Envisat SAR (non-interferometric) satellite data are presented.

  19. [In vivo imaging of the conjunctival epithelium using confocal laser scanning microscopy].

    PubMed

    Rath, R; Stave, J; Guthoff, R; Giebel, J; Tost, F

    2006-05-01

    In various ocular diseases, cytomorphological findings of the ocular surface are an essential component of clinical diagnostics. When evaluating the conjunctival epithelium, minimally invasive acquisition of biomaterial is necessary for lab and technical processing and in vitro histological examination. To examine corneal structures in vivo, confocal laser scanning microscopy is a successful standard method. Our aim was to employ in vivo confocal laser scanning microscopy also for examining the conjunctival epithelium. Results were analyzed and compared with cytomorphological findings of impression cytology. Accordingly, the basic features of conjunctival in vivo examination using RLSM were described and defined. In vivo images were analyzed and compared with impression cytological slide preparations (n=110) of 23 healthy test persons. Examination was standardized. Finally, the confocal laser scan images were compared to the impression cytological patterns. Due to the distribution of reflectors (pixel brightness), diagnostic analysis of important morphological structures (cell nucleus, cytoplasm, nucleus/plasma relation) of the conjunctiva is possible. Secretory cells of the epithelium (goblet cells) can be easily recognized by their size. Highly reflective pixels depict cell walls or wide intercellular spaces with high contrast. The in vivo investigation of important anatomical and morphological structures of the conjunctival epithelium is possible using RLSM. The distribution pattern of goblet cell pixel brightness may correlate with various secretion contents or suggest distinct, recognizable, functional conditions (hypo- or hypersecretion).

  20. Roof Modelling Potential of Unmanned Air Vehicle Point Clouds with Respect to Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Karakis, Serkan; Gunes Sefercik, Umut; Atalay, Can

    2016-07-01

    In parallel with the improvement of laser scanning technologies, dense point clouds which provide the detailed description of terrain and non-terrain objects became indispensable for remotely-sensed data users. Owing to the large demand, besides laser scanning, point clouds were started to achieve using photogrammetric images. Unmanned air vehicle (UAV) images are one of the most preferred data for creating dense point clouds by the advantage of low cost, rapid and periodically gain. In this study, we tried to assess the roof modelling potential of UAV point clouds by comparing three dimensional (3D) roof models produced from UAV and terrestrial laser scanning (TLS) point clouds. In the study, very popular low cost action camera SJ4000 and Faro Laser Scanner Focus3D X 330 were used to provide point clouds and the roof of Bulent Ecevit University Civil Aviation Academy building was utilized. For the validation of horizontal and vertical geolocation accuracies, standard deviation was used as the main indicator. The visual results demonstrated that UAV roof model is almost coherent with TLS roof model after the filtering-based refinement on noisy pixels and systematic bias correction. Moreover, the horizontal geolocation accuracy is approx. |5cm| both in X and Y directions and bias corrected vertical geolocation accuracy is approx. 17cm for zero roof slope.

  1. 3D laser scanning and modelling of the Dhow heritage for the Qatar National Museum

    NASA Astrophysics Data System (ADS)

    Wetherelt, A.; Cooper, J. P.; Zazzaro, C.

    2014-08-01

    Curating boats can be difficult. They are complex structures, often demanding to conserve whether in or out of the water; they are usually large, difficult to move on land, and demanding of gallery space. Communicating life on board to a visiting public in the terra firma context of a museum can be difficult. Boats in their native environment are inherently dynamic artifacts. In a museum they can be static and divorced from the maritime context that might inspire engagement. New technologies offer new approaches to these problems. 3D laser scanning and digital modeling offers museums a multifaceted means of recording, monitoring, studying and communicating watercraft in their care. In this paper we describe the application of 3D laser scanning and subsequent digital modeling. Laser scans were further developed using computer-generated imagery (CGI) modeling techniques to produce photorealistic 3D digital models for development into interactive, media-based museum displays. The scans were also used to generate 2D naval lines and orthographic drawings as a lasting curatorial record of the dhows held by the National Museum of Qatar.

  2. Analysis of Terrestrial Laser Scanning and Photogrammetry Data for Documentation of Historical Artifacts

    NASA Astrophysics Data System (ADS)

    Kuçak, R. A.; Kiliç, F.; Kisa, A.

    2016-10-01

    Historical artifacts living from the past until today exposed to many destructions non-naturally or naturally. For this reason, The protection and documentation studies of Cultural Heritage to inform the next generations are accelerating day by day in the whole world. The preservation of historical artifacts using advanced 3D measurement technologies becomes an efficient tool for mapping solutions. There are many methods for documentation and restoration of historic structures. In addition to traditional methods such as simple hand measurement and tachometry, terrestrial laser scanning is rapidly becoming one of the most commonly used techniques due to its completeness, accuracy and fastness characteristics. This study evaluates terrestrial laser scanning(TLS) technology and photogrammetry for documenting the historical artifacts facade data in 3D Environment. PhotoModeler software developed by Eos System was preferred for Photogrammetric method. Leica HDS 6000 laser scanner developed by Leica Geosystems and Cyclone software which is the laser data evaluation software belonging to the company is preferred for Terrestrial Laser Scanning method. Taking into account the results obtained with this software product is intended to provide a contribution to the studies for the documentation of cultural heritage.

  3. Terrestrial laser scanning to model sunlight irradiance on cadavers under conditions of natural decomposition.

    PubMed

    Bucheli, Sibyl Rae; Pan, Zhigang; Glennie, Craig L; Lynne, Aaron M; Haarman, Daniel P; Hill, John M

    2014-07-01

    Human decomposition is a dynamic process that is influenced by both abiotic and biotic factors. Measuring these influences, in particular abiotic factors, on the decomposition process is often a challenge for scientists. Recently, researchers have turned to the use of advanced remote sensing technologies in forensic investigations. In this study, a new methodology is described that utilizes precise 3D images captured using terrestrial laser scanning (TLS) to calculate total solar irradiance on a cadaver in a partially forested environment. To test this new measurement approach under actual field conditions, three cadavers were placed in an outdoor environment to decompose. Laser scans were taken the day of placement and used to calculate the total solar irradiance at time points of 24 h, 1 week, and 1 month from placement. The results show that as time progresses, different cadavers at the field site and different areas of the same cadaver receive varying amounts of solar irradiance. The modeling based on these laser scans can be used to create predictive images of solar irradiance that may provide researchers with a new tool to help quantitatively assess the effect of solar irradiance on a cadaver ecosystem.

  4. Pixel Bleeding Correction in Laser Scanning Luminescence Imaging Demonstrated Using Optically Stimulated Luminescence.

    PubMed

    Yukihara, Eduardo G; Ahmed, Md Foiez

    2015-12-01

    This paper describes and investigates the performance of an algorithm to correct for "pixel bleeding" caused by slow luminescence centers in laser scanning imaging (e.g., X-ray imaging using photostimulable phosphors and 2D dosimetry using optically stimulated luminescence). The algorithm is based on a deconvolution procedure that takes into account the lifetime of the slow luminescence center and is further constrained by the detection of fast and slow luminescence centers and combining rows scanned in opposite directions. The algorithm was tested using simulated data and demonstrated experimentally by applying it to image reconstruction of two types of Al2O3 X-ray detector films ( Al2O3:C and Al2O3 :C,Mg), whose use in 2D dosimetry in conjunction with laser-scanning readout has so far been prevented by slow luminescence centers (F-centers, 35 ms lifetime). We show that the algorithm allows the readout of Al2O3 film detectors 300-500 times faster than generally allowed considering the lifetime of the main luminescence centers. By relaxing the stringent requirements on the detector's luminescence lifetime, the algorithm opens the possibility of using new materials in 2D dosimetry as well as other laser scanning applications, such as X-ray imaging using storage phosphors and scanning confocal microscopy, although the effect of the noise introduced must be investigated for each specific application.

  5. Compensation of temporal and spatial dispersion for multiphoton acousto-optic laser-scanning microscopy

    NASA Astrophysics Data System (ADS)

    Iyer, Vijay; Saggau, Peter

    2003-10-01

    In laser-scanning microscopy, acousto-optic (AO) deflection provides a means to quickly position a laser beam to random locations throughout the field-of-view. Compared to conventional laser-scanning using galvanometer-driven mirrors, this approach increases the frame rate and signal-to-noise ratio, and reduces time spent illuminating sites of no interest. However, random-access AO scanning has not yet been combined with multi-photon microscopy, primarily because the femtosecond laser pulses employed are subject to significant amounts of both spatial and temporal dispersion upon propagation through common AO materials. Left uncompensated, spatial dispersion reduces the microscope"s spatial resolution while temporal dispersion reduces the multi-photon excitation efficacy. In previous work, we have demonstrated, 1) the efficacy of a single diffraction grating scheme which reduces the spatial dispersion at least 3-fold throughout the field-of-view, and 2) the use of a novel stacked-prism pre-chirper for compensating the temporal dispersion of a pair of AODs using a shorter mechanical path length (2-4X) than standard prism-pair arrangements. In this work, we demonstrate for the first time the use of these compensation approaches with a custom-made large-area slow-shear TeO2 AOD specifically suited for the development of a high-resolution 2-D random-access AO scanning multi-photon laser-scanning microscope (AO-MPLSM).

  6. Resolution and contrast enhancement in laser scanning microscopy using dark beam imaging.

    PubMed

    Dehez, Harold; Piché, Michel; De Koninck, Yves

    2013-07-01

    Laser scanning microscopy allows for three-dimensional imaging of cells with molecular specific labeling. However the spatial resolution of optical microscopy is fundamentally limited by the diffraction of light. In the last two decades many techniques have been introduced to enhance the resolution of laser scanning microscopes. However most of these techniques impose strong constraints on the specimen or rely on complex optical systems. These constraints limit the applicability of resolution improvement to various imaging modalities and sample types. To overcome these limitations, we introduce here a novel approach, which we called Switching LAser Mode (SLAM) microscopy, to enhance resolution and contrast in laser scanning microscopy. SLAM microscopy relies on subtracting images obtained with dark and bright modes, and exploits the smaller dimensions of the dark spot of the azimuthally polarized TE 01 mode. With this approach, resolution is improved by a factor of two in confocal microscopy. The technique is not based on complex nonlinear processes and thus requires laser power similar to that used in conventional imaging, minimizing photo-damage. The flexibility of the approach enables retrofitting in commercial confocal and two-photon microscopes and opens avenues for resolution enhancement in fluorescence-independent microscopy.

  7. Comparison of a novel surface laser scanning anthropometric technique to traditional methods for facial parameter measurements.

    PubMed

    Joe, Paula S; Ito, Yasushi; Shih, Alan M; Oestenstad, Riedar K; Lungu, Claudiu T

    2012-01-01

    This study was designed to determine if three-dimensional (3D) laser scanning techniques could be used to collect accurate anthropometric measurements, compared with traditional methods. The use of an alternative 3D method would allow for quick collection of data that could be used to change the parameters used for facepiece design, improving fit and protection for a wider variety of faces. In our study, 10 facial dimensions were collected using both the traditional calipers and tape method and a Konica-Minolta Vivid9i laser scanner. Scans were combined using RapidForm XOR software to create a single complete facial geometry of the subject as a triangulated surface with an associated texture image from which to obtain measurements. A paired t-test was performed on subject means in each measurement by method. Nine subjects were used in this study: five males (one African-American and four Caucasian females) and four females displaying a range of facial dimensions. Five measurements showed significant differences (p<0.05), with most accounted for by subject movements or amended by scanning technique modifications. Laser scanning measurements showed high precision and accuracy when compared with traditional methods. Significant differences found can be very small changes in measurements and are unlikely to present a practical difference. The laser scanning technique demonstrated reliable and quick anthropometric data collection for use in future projects in redesigning respirators.

  8. Multiparameter Correction Intensity of Terrestrial Laser Scanning Data as AN Input for Rock Surface Modelling

    NASA Astrophysics Data System (ADS)

    Paleček, V.; Kubíček, P.

    2016-06-01

    A large increase in the creation of 3D models of objects all around us can be observed in the last few years; thanks to the help of the rapid development of new advanced technologies for spatial data collection and robust software tools. A new commercially available airborne laser scanning data in Czech Republic, provided in the form of the Digital terrain model of the fifth generation as irregularly spaced points, enable locating the majority of rock formations. However, the positional and height accuracy of this type of landforms can reach huge errors in some cases. Therefore, it is necessary to start mapping using terrestrial laser scanning with the possibility of adding a point cloud data derived from ground or aerial photogrammetry. Intensity correction and noise removal is usually based on the distance between measured objects and the laser scanner, the incidence angle of the beam or on the radiometric and topographic characteristics of measured objects. This contribution represents the major undesirable effects that affect the quality of acquisition and processing of laser scanning data. Likewise there is introduced solutions to some of these problems.

  9. Decision model in the laser scanning system for pavement crack detection

    NASA Astrophysics Data System (ADS)

    Sun, Xiaoming; Huang, Jianping; Liu, Wanyu

    2011-12-01

    Pavement crack detection plays an important role in the pavement maintaining and management. Recently, the laser scanning technique for pavement crack detection becomes more and more popular due to its ability of discriminating dark areas, which are not caused by pavement distress such as tire marks, oil spills, and shadows. However, this technique still bears some errors for pavement crack recognition errors, thus in the present work, the factors contributed to these errors in laser scanning system are first analyzed, and then a decision model for the laser scanning pavement crack detection system based on the hypothesis test is proposed. Experimental analyses and results show that this model not only allows us to build the relationship between the contribution factors and crack detection accuracy and to provide the criteria to compare the detection accuracy for the different roads, but also can be used to judge whether the crack exists with a reasonable number of deformed light stripes. Therefore, the proposed decision model can provide guidance on the pavement crack detection and has a practical value.

  10. A large-field polarisation-resolved laser scanning microscope: applications to CARS imaging.

    PubMed

    DE Vito, G; Canta, A; Marmiroli, P; Piazza, V

    2015-11-01

    Laser-scanning imaging techniques are frequently used to probe the molecule spatial orientation in a sample of interest by exploiting selection rules depending on the polarisation of the excitation light. For the successful implementation of these techniques the precise control of the polarisation at the sample level is of fundamental importance. Polarisation distortions induced by the optical elements are often the main limitation factor for the maximum size of the field-of-view in polarisation-resolved (PR) laser-scanning microscopy, since for large scanning angles the polarisation distortions may mask the real sample structure. Here we shall demonstrate the implementation of large-field-of-view PR microscopy and show PR CARS imaging of mouse spinal cord thanks to a careful design of the laser-beam optical path. We shall show that this design leads to strongly suppressed distortions and quantify their effects on the final images. Although the focus of this work is on CARS imaging, we stress that the approaches described here can be successfully applied to a wide range of PR laser-scanning techniques.

  11. Terrestrial Laser Scanning for Measuring Stream Bank Erosion within Legacy Sediments: Data Processing and Analysis Methods

    NASA Astrophysics Data System (ADS)

    Starek, M. J.; Mitasova, H.; Wegmann, K. W.

    2011-12-01

    Land clearing for agricultural purposes following European settlement of America resulted in upland erosion rates 50-400 times above long-term geologic rates in much of the North Carolina Piedmont region. A considerable amount of the eroded sediment was subsequently aggraded on floodplains and impounded in the slackwater ponds behind milldams. This trapped "legacy" sediment is commonly mistaken for natural floodplain deposition and has remained largely unrecognized as a potential source of accelerated sediment erosion contributing to modern water quality impairment. In this study, terrestrial laser scanning (TLS) is utilized to monitor stream bank evolution along a reach that has breached a former millpond. Due to the unique surface geometry and orientation of the stream bank, vegetation occlusion, and true 3D structure of the point cloud, a systematic data processing approach is implemented to compute the change in sediment volume between repeat TLS surveys. The processing approach consists of the following four steps: 1) segmentation of the stream bank point cloud; 2) transformation of the point cloud such that the xy plane is parallel to the trend of the bank; 3) filter vegetation by selecting local lowest point within a grid cell; 4) smooth high frequency noise 5) generate bare earth digital elevation model (DEM). From the DEMs, change in volume was quantified for a 13 m x 3.5 m section of the stream bank providing an estimate on erosion rates and slumping between surveys. The major mechanisms for the observed changes are freeze-thaw events and fluvial entrainment. To evaluate the surface evolution between the distinct sedimentary layers (legacy vs non-legacy) that comprise the stream bank, elevation change is modeled as a continuous trivariate function z = f(x,y,t) where x,y is horizontal location, t is time, and z is a first-surface referenced elevation. Hence, z=0 for all x,y at t=0, time of first survey. The filtered, transformed, and first

  12. Laser scanning methods and a phase comparison, modulated laser range finder for terrain sensing on a Mars roving vehicle. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Herb, G. T.

    1973-01-01

    Two areas of a laser range finder for a Mars roving vehicle are investigated: (1) laser scanning systems, and (2) range finder methods and implementation. Several ways of rapidly scanning a laser are studied. Two digital deflectors and a matrix of laser diodes, are found to be acceptable. A complete range finder scanning system of high accuracy is proposed. The problem of incident laser spot distortion on the terrain is discussed. The instrumentation for a phase comparison, modulated laser range finder is developed and sections of it are tested.

  13. The applicability of hematoxylin-eosin staining plus fluorescence or confocal laser scanning microscopy to the study of elastic fibers in cartilages.

    PubMed

    de Carvalho, H F; Taboga, S R

    1996-11-01

    This study focuses on the use of hematoxylin-eosin staining plus fluorescence microscopy for the investigation of elastic fibers in some elastic cartilages. We have observed that elastic fibers are consistently imaged by the proposed procedure and the resolution attained is similar to that obtained with the classical Weigert's fuchsin-resorcin. The results also demonstrate that elastin autofluorescence gives little or no contribution to the final fluorescence and that the use of the confocal laser scanning microscope adds to the resolution, permits the use of thicker sections and reveals of minute structural at features. We conclude that this is a relevant tool in elastin research.

  14. A study on snow distribution in high elevations above the forest line using airborne laser scanning

    NASA Astrophysics Data System (ADS)

    Nishihara, T.; Tanise, A.

    2016-12-01

    In cold and snowy regions, the snowmelt water is essential to meet the water demand. It is very important to estimate snow depth distribution in mountain regions as accurately as possible. However at high elevations above the forest line, it is particularly difficult to set snow survey points according to the risk of avalanches. In recent years, the acquisition of high-density three-dimensional spatial data for wide areas has become possible by using airborne laser scanning. We conducted airborne laser scanning twice, in 2012 and in 2015, to measure the snow depth in the same range in mountainous regions. A purpose of the study was how wind affects the snow depth distribution at high elevations based on measurements done for two years in the same range.The surveys were conducted in the Chubetsu Dam basin. It's located in Hokkaido, northern part of Japan. The range of airborne laser scanning was 10km2 and at elevations between 1,100m and 2,300m. The forest line in the survey area is at the elevation of about 1,450m. The airborne laser scanning was conducted from September 22 to 25, 2009 (during the snow-free period), on March 10, 2012 and on March 27, 2015 (during the snowy period). The snow depth was calculated as the difference between the elevation in the period with snow and that in the period without snow.The snow depth distribution is strongly affected by wind at higher elevations above the forest line. To analyze how wind affects snow depth distribution, we divided a forest area and a high-elevation area into 16 orientation zones each, and we calculated the average snow depth for each zone. The snow depth is nearly evenly distributed in the forest area in 2012 and 2015. In contrast, the snow depth distribution above the forest line shows greater snow depths in the ranges between northeast and southeast than in the ranges between northwest and southwest in 2012 and 2015. Strong winds that can transport snow tend to be westerly when winter storms occur on the

  15. Combining laser scan and photogrammetry for 3D object modeling using a single digital camera

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Zhang, Hong; Zhang, Xiangwei

    2009-07-01

    In the fields of industrial design, artistic design and heritage conservation, physical objects are usually digitalized by reverse engineering through some 3D scanning methods. Laser scan and photogrammetry are two main methods to be used. For laser scan, a video camera and a laser source are necessary, and for photogrammetry, a digital still camera with high resolution pixels is indispensable. In some 3D modeling tasks, two methods are often integrated to get satisfactory results. Although many research works have been done on how to combine the results of the two methods, no work has been reported to design an integrated device at low cost. In this paper, a new 3D scan system combining laser scan and photogrammetry using a single consumer digital camera is proposed. Nowadays there are many consumer digital cameras, such as Canon EOS 5D Mark II, they usually have features of more than 10M pixels still photo recording and full 1080p HD movie recording, so a integrated scan system can be designed using such a camera. A square plate glued with coded marks is used to place the 3d objects, and two straight wood rulers also glued with coded marks can be laid on the plate freely. In the photogrammetry module, the coded marks on the plate make up a world coordinate and can be used as control network to calibrate the camera, and the planes of two rulers can also be determined. The feature points of the object and the rough volume representation from the silhouettes can be obtained in this module. In the laser scan module, a hand-held line laser is used to scan the object, and the two straight rulers are used as reference planes to determine the position of the laser. The laser scan results in dense points cloud which can be aligned together automatically through calibrated camera parameters. The final complete digital model is obtained through a new a patchwise energy functional method by fusion of the feature points, rough volume and the dense points cloud. The design

  16. Three-Dimensional Digital Documentation of Heritage Sites Using Terrestrial Laser Scanning and Unmanned Aerial Vehicle Photogrammetry

    NASA Astrophysics Data System (ADS)

    Jo, Y. H.; Kim, J. Y.

    2017-08-01

    Three-dimensional digital documentation is an important technique for the maintenance and monitoring of cultural heritage sites. This study focuses on the three-dimensional digital documentation of the Magoksa Temple, Republic of Korea, using a combination of terrestrial laser scanning and unmanned aerial vehicle (UAV) photogrammetry. Terrestrial laser scanning mostly acquired the vertical geometry of the buildings. In addition, the digital orthoimage produced by UAV photogrammetry had higher horizontal data acquisition rate than that produced by terrestrial laser scanning. Thus, the scanning and UAV photogrammetry were merged by matching 20 corresponding points and an absolute coordinate system was established using seven ground control points. The final, complete threedimensional shape had perfect horizontal and vertical geometries. This study demonstrates the potential of integrating terrestrial laser scanning and UAV photogrammetry for three-dimensional digital documentation. This new technique is expected to contribute to the three-dimensional digital documentation and spatial analysis of cultural heritage sites.

  17. Ship Maintenance Processes with Collaborative Product Lifecycle Management and 3D Terrestrial Laser Scanning Tools: Reducing Costs and Increasing Productivity

    DTIC Science & Technology

    2012-04-30

    approach that incorporates the 3D terrestrial laser scanning (3D TLS) and collaborative product lifecycle management (collab- PLM ) tool suite. Results...incorporated into final implementation of the 3D TLS and collab- PLM tools. 15. SUBJECT TERMS 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF...terrestrial laser scanning (3D TLS) and collaborative product lifecycle management (collab- PLM ) tool suite. Results suggest that when the SHIPMAIN process

  18. Large volume reconstruction from laser scanning microscopy using micro-CT as a template for deformation compensation

    NASA Astrophysics Data System (ADS)

    Subramanian, A.; Krol, A.; Poddar, A. H.; Price, R. L.; Swarnkar, R.; Feiglin, D. H.

    2007-03-01

    In biomedical research, there is an increased need for reconstruction of large soft tissue volumes (e.g. whole organs) at the microscopic scale from images obtained using laser scanning microscopy (LSM) with fluorescent dyes targeting selected cellular features. However, LSM allows reconstruction of volumes not exceeding a few hundred ım in size and most LSM procedures require physical sectioning of soft tissue resulting in tissue deformation. Micro-CT (μCT) can provide deformation free tomographic image of the whole tissue volume before sectioning. Even though, the spatial resolution of μCT is around 5 μm and its contrast resolution is poor, it could provide information on external and internal interfaces of the investigated volume and therefore could be used as a template in the volume reconstruction from a very large number of LSM images. Here we present a method for accurate 3D reconstruction of the murine heart from large number of images obtained using confocal LSM. The volume is reconstructed in the following steps: (i) Montage synthesis of individual LSM images to form a set of aligned optical planes within given physical section; (ii) Image enhancement and segmentation to correct for non-uniform illumination and noise; (iii) Volume matching of a synthesized physical section to a corresponding sub-volume of μCT (iv) Affine registration of the physical section to the selected μCT sub-volume. We observe correct gross alignment of the physical sections. However, many sections still exhibit local misalignment that could be only corrected via local nonrigid registration to μCT template and we plan to do it in the future.

  19. Comparison of calcium imaging in dorsal root ganglion neurons by using laser scanning confocal and two-photon microscopy

    NASA Astrophysics Data System (ADS)

    Huang, Yimei; Yang, Hongqin; Chen, Jiangxu; Shen, Xiuqiu; Zheng, Liqin; Wang, Yuhua; Xie, Shusen

    2012-03-01

    As one of the most important second messengers, calcium in nerve cells plays a critical role in neuronal processes, including excitability, neurotransmitter release, synaptic plasticity. Modulation of the calcium concentration is an important means of regulating diverse neuronal functions. To evaluate the role of calcium, quantitative measurement of cytosolic free calcium concentrations is necessary. There are several optical techniques that are available for measurement of calcium in live cells. Laser scanning confocal microscopy and two-photon microscopy are two prevalent techniques for their advantage in spatial resolution. In this paper, calcium in dorsal root ganglion neurons was imaged by laser scanning confocal microscopy and two-photon microscopy with Fluo-3, a calcium specific fluorescence probe. Both of spatial resolution and photobleaching, two common limitations of optical image modality, were compared between laser scanning confocal microscopy and two-photon microscopy, respectively. Three dimension images showed that laser scanning confocal microscopy and two-photon microscopy had not only similar lateral resolution but also parallel vertical resolution. However, Laser scanning confocal microscopy had an advantage over the two-photon microcopy in photobleaching. These results indicated that laser scanning confocal microscopy was more suitable than two-photon microscopy to be applied in imaging calcium in dorsal root ganglion neurons with Fluo-3.

  20. Terrestrial laser scanning for high resolution cyclostratigraphy of chert in pelagic limestone series

    NASA Astrophysics Data System (ADS)

    Penasa, L.; Franceschi, M.; Preto, N.

    2012-04-01

    We here propose the use of terrestrial laser scanning (TLS) for the mapping of chert on natural outcrops and for rapid extraction of its distribution along stratigraphic sections. The technique permits rapid production of high-definition time series for cyclostratigraphic analysis. Chert, sometimes referred to as flint, is a widespread component of sedimentary successions. It is often found in deep water and pelagic sediments and is constituted by cryptocrystalline varieties of quartz. It is generally accepted that the origin of chert is principally biogenic; it derives from the slow alteration, through a process called maturation, of opaline organic components as tests and spicules under the influence of pore waters. Most often, chert forms nodules of various size, or more or less continuous layers. Its color shows strong variability (white, red, gray, black). Although it could record paleoceanographic and climatic changes because of its biogenic nature, the cyclostratigraphic study of chert is largely neglected. This is mainly due to the difficulty of logging it. Hand logging is time consuming, but also, because of nodules' highly variable shape, lateral variability of chert abundance is large. Photographic image-processing techniques could help in principle, but they become difficult to use when chert has a color similar to that of the host rock. Chert is easily detectable in TLS generated images because of its very low reflectivity at infrared (IR) wavelengths, also where the color of chert in visible light is close to that of the host rock. Thus, TLS data can be used to map the distribution of chert on an outcrop, and to compute its abundance along a stratigraphic section. The ultimate result of such data processing, for which a suite of original procedures was implemented, is a stratigraphic log that is suitable for time series analysis. A section in the early Cretaceous Maiolica Formation of Central Italy (Gubbio) was considered as preliminary case study for

  1. CdSe/CdS-quantum rods: fluorescent probes for in vivo two-photon laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Dimitrijevic, Jelena; Krapf, Lisa; Wolter, Christopher; Schmidtke, Christian; Merkl, Jan-Philip; Jochum, Tobias; Kornowski, Andreas; Schüth, Anna; Gebert, Andreas; Hüttmann, Gereon; Vossmeyer, Tobias; Weller, Horst

    2014-08-01

    CdSe/CdS-Quantum-dots-quantum-rods (QDQRs) with an aspect ratio of ~6 are prepared via the seeded growth method, encapsulated within a shell of crosslinked poly(isoprene)-block-poly(ethylene glycol) (PI-b-PEG) diblock copolymer, and transferred from the organic phase into aqueous media. Their photoluminescence quantum yield (PLQY) of 78% is not compromised by the phase transfer. Within a period of two months the PLQY of QDQRs in aqueous solution at neutral pH decreases only slightly (to ~65%). The two-photon (TP) action cross sections of QDQRs (~105 GM) are two orders of magnitude higher than those of CdSe/CdS/ZnS-core/shell/shell quantum dots (QDs, ~103 GM) with comparable diameter (~5 nm). After applying PI-b-PEG encapsulated QDQRs onto the small intestinal mucosa of mice in vivo, their strong red fluorescence can easily be observed by two-photon laser scanning microscopy (TPLSM) and clearly distinguished from autofluorescent background. Our results demonstrate that PI-b-PEG encapsulated CdSe/CdS-QDQRs are excellent probes for studying the uptake and fate of nanoparticles by two-photon imaging techniques in vivo.CdSe/CdS-Quantum-dots-quantum-rods (QDQRs) with an aspect ratio of ~6 are prepared via the seeded growth method, encapsulated within a shell of crosslinked poly(isoprene)-block-poly(ethylene glycol) (PI-b-PEG) diblock copolymer, and transferred from the organic phase into aqueous media. Their photoluminescence quantum yield (PLQY) of 78% is not compromised by the phase transfer. Within a period of two months the PLQY of QDQRs in aqueous solution at neutral pH decreases only slightly (to ~65%). The two-photon (TP) action cross sections of QDQRs (~105 GM) are two orders of magnitude higher than those of CdSe/CdS/ZnS-core/shell/shell quantum dots (QDs, ~103 GM) with comparable diameter (~5 nm). After applying PI-b-PEG encapsulated QDQRs onto the small intestinal mucosa of mice in vivo, their strong red fluorescence can easily be observed by two-photon laser

  2. Improving peatland erosion rate measurements through the use of terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Grayson, R.; Holden, J.; Jones, R.; Lloyd, A.

    2013-12-01

    Globally peatlands account for 30-50% of all carbon stored within soils (Holden, 2005). Within the UK they represent the single largest terrestrial carbon store, with blanket bogs covering roughly 7.5% (Tallis et al., 1997); unfortunately these upland blanket bogs are often found in a degraded state. The amount of carbon being lost to erosional processes in peatlands is poorly constrained, with estimates typically being based on traditional low-tech methods. Erosion pins have been the primary method for measuring erosion rates in peatlands; however their use is prone to error due to the depth of peat and its high water content which allows both horizontal and vertical movement through time. Erosion pins can only realistically be used over a relatively small area and assume erosion remains constant between pins making any upscaling problematic. Therefore, innovative methods are required to improve estimates of peatland erosion that are capable of increasing both spatial coverage and accuracy. Terrestrial laser scanning is increasingly being used by geomorphologists to produce highly detailed 3D topographic maps. A pilot study was undertaken to assess the ability of terrestrial laser scanning to measure erosion rates within peatlands and to identify any obstacles that may need to be overcome. An actively eroding blanket bog in northern England was chosen as the test site with surveys being carried out before and after winter as active erosion is most likely during winter months. Erosion measurements were also made using erosion pins to allow comparisons between the two methods. Terrestrial laser scanning was not only found to offer vastly improved spatial coverage compared with erosion pins but was also able to provide data at a much higher resolution. Erosion rates calculated using erosion pins were significantly higher than the average rate calculated using terrestrial laser scanning (-35mm compared to +2.5mm), this overestimation by the erosion pins primarily

  3. Extraction of Forest Roads from Full-waveform Airborne Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Djuricic, Ana; Hollaus, Markus

    2013-04-01

    The knowledge about the position of forest roads is important for the management and protection of forests. Most often this information is not available on a digital form so that it can be integrated into a GIS to use it e.g. for routing applications or to plan harvesting activities. Furthermore, the available information about forest roads is often not up-to-date. The extraction of forest roads from remote sensing data i.e. aerial photographs is often limited due to the visibility of the terrain within a forest. The increasing availability of airborne laser scanning (ALS) data has changed this situation during the last years. As an active measurement system ALS provide geometric information from the forest floor as well as the forest canopy. Additionally, the new generation of ALS sensors, the so-called full-waveform sensors provide in addition to the geometric information (i.e. 3D position, echo width) radiometric information (i.e. backscatter cross section) about the backscattering objects, which are excellent data sources to describe the terrain surface within a forest. Thus the aim of this study is to develop a semi-automatic method to extract the position of forest roads from full-waveform ALS data. Based on the 3D point cloud different raster layers were derived such as the digital terrain model (DTM), the slope, the backscatter cross section, different roughness parameters (i.e. echo width, standard deviation of plane fitting residuals of terrain points), the vertical component of the surface normals and the normalized digital surface model (nDSM), which represents the object height above the natural ground. The developed workflow classifies each input raster separately into the classes roads and non-roads. Morphological operations were applied on the classified raster datasets to smooth the outline of the extracted roads and to remove any small gaps in the detected roads. Several raster outputs were combined and used further for additional GIS analysis and

  4. Gravel transport by ice in a subarctic river from accurate laser scanning

    NASA Astrophysics Data System (ADS)

    Lotsari, Eliisa; Wang, Yunsheng; Kaartinen, Harri; Jaakkola, Anttoni; Kukko, Antero; Vaaja, Matti; Hyyppä, Hannu; Hyyppä, Juha; Alho, Petteri

    2015-10-01

    For decades the importance of ice and the effects of cold-region processes on river channel morphology have been discussed, with a general consensus as to their importance emerging only recently. River ice cover, anchor ice, frazil ice, and ice jams may not only scour the channel bed and banks but also pick up, transport, and deposit fine sediments and gravels during winter, especially during the spring ice breakup period. However, knowledge of the interactions between coarse sediment transport and ice processes remains insufficient, particularly in rockier river reaches, with a lack of accurate and sufficiently extensive data hindering their quantification. The aim of this study was to quantify and analyse the impact of river ice on gravel transport in a subarctic river during one winter via the acquisition of laser scanning data for the river channel and ice surface. Terrestrial and mobile laser scanning were performed in 2012-2013 on the Tana River in northern Finland. Both of these techniques are considered accurate and applicable for detecting elevation and volumetric changes in river bed, defining gravel clast sizes, and detecting the movement of individual clasts. More importantly, ice surface, thickness, and decay during spring were also captured via laser scanning. In the winter of 2012-2013, a period characterised by an absence of ice jams and mid-winter ice-decay periods, with spring ice breakup discharges close to average yearly conditions, ice had the most significant role, greater than that of flowing water, in erosion and transport of coarse sediment from the channel bed and gently sloping banks. Changes in river bed elevation and volume were recorded throughout the study site, and erosion predominated. In addition to broader scale erosion, the movement of single clasts up to 2 m in size occurred. However, the observed overall channel change patterns did not coincide with the areas of fastest ice decay. The obtained results could also be applied to

  5. The Benefits of Terrestrial Laser Scanning and Hyperspectral Data Fusion Products

    NASA Astrophysics Data System (ADS)

    Buckley, S. J.; Kurz, T. H.; Schneider, D.

    2012-10-01

    Close range hyperspectral imaging is a developing method for the analysis and identification of material composition in many applications, such as in within the earth sciences. Using compact imaging devices in the field allows near-vertical topography to be imaged, thus bypassing the key limitations of viewing angle and resolution that preclude the use of airborne and spaceborne platforms. Terrestrial laser scanning allows 3D topography to be captured with high precision and spatial resolution. The combination of 3D geometry from laser scanning, and material properties from hyperspectral imaging allows new fusion products to be created, adding new information for solving application problems. This paper highlights the advantages of terrestrial lidar and hyperspectral integration, focussing on the qualitative and quantitative aspects, with examples from a geological field application. Accurate co-registration of the two data types is required. This allows 2D pixels to be linked to the 3D lidar geometry, giving increased quantitative analysis as classified material vectors are projected to 3D space for calculation of areas and examination of spatial relationships. User interpretation of hyperspectral results in a spatially-meaningful manner is facilitated using visual methods that combine the geometric and mineralogical products in a 3D environment. Point cloud classification and the use of photorealistic modelling enhance qualitative validation and interpretation, and allow image registration accuracy to be checked. A method for texture mapping of lidar meshes with multiple image textures, both conventional digital photos and hyperspectral results, is described. The integration of terrestrial laser scanning and hyperspectral imaging is a valuable means of providing new analysis methods, suitable for many applications requiring linked geometric and chemical information.

  6. Analysis of Mobile Laser Scanning Data and Multi-View Image Reconstruction

    NASA Astrophysics Data System (ADS)

    Briese, C.; Zach, G.; Verhoeven, G.; Ressl, C.; Ullrich, A.; Studnicka, N.; Doneus, M.

    2012-07-01

    The combination of laser scanning (LS, active, direct 3D measurement of the object surface) and photogrammetry (high geometric and radiometric resolution) is widely applied for object reconstruction (e.g. architecture, topography, monitoring, archaeology). Usually the results are a coloured point cloud or a textured mesh. The geometry is typically generated from the laser scanning point cloud and the radiometric information is the result of image acquisition. In the last years, next to significant developments in static (terrestrial LS) and kinematic LS (airborne and mobile LS) hardware and software, research in computer vision and photogrammetry lead to advanced automated procedures in image orientation and image matching. These methods allow a highly automated generation of 3D geometry just based on image data. Founded on advanced feature detector techniques (like SIFT (Scale Invariant Feature Transform)) very robust techniques for image orientation were established (cf. Bundler). In a subsequent step, dense multi-view stereo reconstruction algorithms allow the generation of very dense 3D point clouds that represent the scene geometry (cf. Patch-based Multi-View Stereo (PMVS2)). Within this paper the usage of mobile laser scanning (MLS) and simultaneously acquired image data for an advanced integrated scene reconstruction is studied. For the analysis the geometry of a scene is generated by both techniques independently. Then, the paper focuses on the quality assessment of both techniques. This includes a quality analysis of the individual surface models and a comparison of the direct georeferencing of the images using positional and orientation data of the on board GNSS-INS system and the indirect georeferencing of the imagery by automatic image orientation. For the practical evaluation a dataset from an archaeological monument is utilised. Based on the gained knowledge a discussion of the results is provided and a future strategy for the integration of both

  7. Tree-centric mapping of forest carbon density from airborne laser scanning and hyperspectral data.

    PubMed

    Dalponte, Michele; Coomes, David A

    2016-10-01

    Forests are a major component of the global carbon cycle, and accurate estimation of forest carbon stocks and fluxes is important in the context of anthropogenic global change. Airborne laser scanning (ALS) data sets are increasingly recognized as outstanding data sources for high-fidelity mapping of carbon stocks at regional scales.We develop a tree-centric approach to carbon mapping, based on identifying individual tree crowns (ITCs) and species from airborne remote sensing data, from which individual tree carbon stocks are calculated. We identify ITCs from the laser scanning point cloud using a region-growing algorithm and identifying species from airborne hyperspectral data by machine learning. For each detected tree, we predict stem diameter from its height and crown-width estimate. From that point on, we use well-established approaches developed for field-based inventories: above-ground biomasses of trees are estimated using published allometries and summed within plots to estimate carbon density.We show this approach is highly reliable: tests in the Italian Alps demonstrated a close relationship between field- and ALS-based estimates of carbon stocks (r(2) = 0·98). Small trees are invisible from the air, and a correction factor is required to accommodate this effect.An advantage of the tree-centric approach over existing area-based methods is that it can produce maps at any scale and is fundamentally based on field-based inventory methods, making it intuitive and transparent. Airborne laser scanning, hyperspectral sensing and computational power are all advancing rapidly, making it increasingly feasible to use ITC approaches for effective mapping of forest carbon density also inside wider carbon mapping programs like REDD++.

  8. A Survey Study of the Blast Furnace at Kuangshan Village Using 3D Laser Scanning

    NASA Astrophysics Data System (ADS)

    Wang, Jin; Huang, Xing; Qian, Wei

    2017-01-01

    The blast furnace from the Northern Song Dynasty at Kuangshan Village is the tallest blast furnace that remains from ancient China. Previous studies have assumed that the furnace had a closed mouth. In this paper, a three-dimensional (3D) model of the blast furnace is constructed using 3D laser scanning technology, and accurate profile data are obtained using software. It is shown that the furnace throat is smaller than had been previously thought and that the furnace mouth is of the open type. This new furnace profile constitutes a discovery in the history of iron-smelting technology.

  9. Low temperature laser scanning microscopy of a superconducting radio-frequency cavity

    DOE PAGES

    Ciovati, G.; Anlage, Steven M.; Baldwin, C.; ...

    2012-03-16

    An apparatus was created to obtain, for the first time, 2D maps of the surface resistance of the inner surface of an operating superconducting radio-frequency niobium cavity by a low-temperature laser scanning microscopy technique. This allows identifying non-uniformities of the surface resistance with a spatial resolution of about one order of magnitude better than with earlier methods. A signal-to-noise ratio of about 10 dB was obtained with 240 mW laser power and 1 Hz modulation frequency. The various components of the apparatus, the experimental procedure and results are discussed in details in this contribution.

  10. Development of a photothermal double beam laser scanning system in biopharmaceutical applications

    NASA Astrophysics Data System (ADS)

    Faubel, W.; Gotter, B.; Heißler, St.; Schlegel, M.; Neubert, R. H. H.

    2010-03-01

    Photothermal beam deflection (PDS) has been applied to obtain information regarding the penetration of methylorange (MO) and ditranol (DI) into artificial membranes. The measurable depth range is 56 μm. Photothermal beam deflection allows on the one hand depth resolved investigations by the use of a frequency modulation of the excitation beam to reach deeper regions even in opaque sample, and on the other hand lateral imaging. To explore the potential use of a novel photothermal double beam laser scanning system, measurements in drug delivery analysis have been used for depth profiling and imaging into an artificial membrane, which represents stratum corneum or bovine hoof, appropriately.

  11. Applying RANSAC Algorithm for Fitting Scanning Strips from Airborne Laser Scanning

    NASA Astrophysics Data System (ADS)

    Błaszczak-Bąk, Wioleta; Janicka, Joanna; Sobieraj-Żłobińska, Anna

    2016-12-01

    During the development of the data acquired by airborne laser scanning the important issue is the fitting and georeferencing of ALS point clouds by means of the tie surfaces and the reference planes. The process of scanning strips adjustment is based on mutual integration of point clouds (scanning strips) and their adaptation to the reference planes. In simultaneous adjustment all strips are combined into one geometrically coherent block, to which the coordinates are given. In the process of determining discrepancies between scanning strips it is important to determine the correct size of the shifts (offsets). Authors propose to do this by using RANSAC algorithm.

  12. Re-description of Craspodema reflectans (Nematoda, Cyatholaimidae) using confocal laser scanning microscopy.

    PubMed

    Semprucci, Federica; Burattini, Sabrina

    2015-06-12

    Craspodema reflectans, erected by Gerlach 1964, is here re-described from some specimens recently found in the Maldivian archipelago and the implication of the new findings for the taxonomy of the Craspodema genus is discussed. Accordingly, an emended diagnosis of Craspodema genus and C. reflectans species are proposed. New data are also provided with the aid of the confocal laser scanning microscopy, using the natural fluorescence of the nematodes. The approach described here lays new foundations for the study of Museum collection material and it may be decisive for capture of new morphological details.

  13. Imaging Single ZnO Vertical Nanowire Laser Cavities using UV-Laser Scanning Confocal Microscopy

    SciTech Connect

    Gargas, D.J.; Toimil-Molares, M.E.; Yang, P.

    2008-11-17

    We report the fabrication and optical characterization of individual ZnO vertical nanowire laser cavities. Dilute nanowire arrays with interwire spacing>10 ?m were produced by a modified chemical vapor transport (CVT) method yielding an ideal platform for single nanowire imaging and spectroscopy. Lasing characteristics of a single vertical nanowire are presented, as well as high-resolution photoluminescence imaging by UV-laser scanning confocal microscopy. In addition, three-dimensional (3D) mapping of the photoluminescence emission performed in both planar and vertical dimensions demonstrates height-selective imaging useful for vertical nanowires and heteronanostructures emerging in the field of optoelectronics and nanophotonics.

  14. Automatic Geo-Referencing Mobile Laser Scanning Data to Uav Images

    NASA Astrophysics Data System (ADS)

    Gao, Y.; Huang, X.; Zhang, F.; Fu, Z.; Yang, C.

    2015-08-01

    In this paper, a framework for adjusting mobile laser scanning point cloud data to improve the accuracy is proposed by integrating high resolution UAV images and MLS. First, aerial triangulated images with a few high accuracy ground control points are taken as control information. Then, a hierarchical strategy is proposed for robust pairwise registration of feature points between point cloud and images, so as to find the deviation of the point cloud. In the next step, a shape-preserving piecewise cubic interpolating method is employed to fit the time dependent error model of the trajectory. Finally, experiments are given to prove the effectiveness of proposed framework.

  15. Use of Terrestrial Laser Scanning Technology for Long Term High Precision Deformation Monitoring

    PubMed Central

    Vezočnik, Rok; Ambrožič, Tomaž; Sterle, Oskar; Bilban, Gregor; Pfeifer, Norbert; Stopar, Bojan

    2009-01-01

    The paper presents a new methodology for high precision monitoring of deformations with a long term perspective using terrestrial laser scanning technology. In order to solve the problem of a stable reference system and to assure the high quality of possible position changes of point clouds, scanning is integrated with two complementary surveying techniques, i.e., high quality static GNSS positioning and precise tacheometry. The case study object where the proposed methodology was tested is a high pressure underground pipeline situated in an area which is geologically unstable. PMID:22303152

  16. Image distortion and its correction in linear galvanometric mirrors-based laser-scanning microscopy

    NASA Astrophysics Data System (ADS)

    Wang, Wenbo; Wu, Zhenguo; Zeng, Haishan

    2015-05-01

    To simplify imaging focusing and calibration tasks, a laser-scanning microscope needs to scan at a moderate frame rate. The inertia of a galvanometric scanner leads to time delays when following external commands, which subsequently introduces image distortions that deteriorate as scan frequency increases. Sinusoidal and triangular waveforms were examined as fast axis driving patterns. The interplay among driving pattern, frequency, sampling rate, phase shift, linear scanning range, and their effect on reconstructed images was discussed. Utilizing position feedback from the linear galvo scanners, the effect of response time could be automatically compensated in real time. Precompensated triangular driving waveform offered the least amount of image distortion.

  17. Confocal laser scanning microscopy of porcine skin: implications for human wound healing studies

    PubMed Central

    VARDAXIS, N. J.; BRANS, T. A.; BOON, M. E.; KREIS, R. W.; MARRES, L. M.

    1997-01-01

    The structure of porcine skin as examined by light microscopy is reviewed and its similarities to and differences from human skin are highlighted. Special imaging techniques and staining procedures are described and their use in gathering morphological information in porcine skin is discussed. Confocal laser scanning microscopy (CLSM) was employed to examine the structure of porcine skin and the findings are presented as an adjunct to the information already available in the literature. It is concluded that CLSM provides valuable additional morphological information to material examined by conventional microscopy and is useful for wound healing studies in the porcine model. PMID:9183682

  18. In vivo measurements of skin barrier: comparison of different methods and advantages of laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Patzelt, A.; Sterry, W.; Lademann, J.

    2010-12-01

    A major function of the skin is to provide a protective barrier at the interface between external environment and the organism. For skin barrier measurement, a multiplicity of methods is available. As standard methods, the determination of the transepidermal water loss (TEWL) as well as the measurement of the stratum corneum hydration, are widely accepted, although they offer some obvious disadvantages such as increased interference liability. Recently, new optical and spectroscopic methods have been introduced to investigate skin barrier properties in vivo. Especially, laser scanning microscopy has been shown to represent an excellent tool to study skin barrier integrity in many areas of relevance such as cosmetology, occupation, diseased skin, and wound healing.

  19. Low-cost laser scanning photoacoustic microscopy system with a pulsed laser diode excitation source

    NASA Astrophysics Data System (ADS)

    Erfanzadeh, Mohsen; Zhu, Quing

    2017-03-01

    We present a low-cost laser scanning photoacoustic microscopy system with a pulsed laser diode as the excitation source. The system utilizes a 905 nm pulsed laser diode with 120 ns pulse width and 1 KHz repetition rate. No averaging is performed in data acquisition, resulting in a short image acquisition time. The maximum field of view is 4.6 mm × 3.7 mm and the lateral resolution is 71 μm. Images of human hairs and mouse ear are presented to demonstrate the feasibility of the system in imaging biological tissue.

  20. Terrestrial Laser Scanning Cultural Heritage preservation in case of natural hazards

    NASA Astrophysics Data System (ADS)

    Kordic, B.; Medak, D.; Pribicevic, B.

    2009-04-01

    Croatian Adriatic coast and the City of Zagreb area are hazardous with respect to earthquake occurance. These areas are rich with cultural monuments, buildings, sculptures... Accurate 3D documentation is needed for reconstruction in case of damage caused by natural disasters like earthquake, landslide ,fire... The technology of terestrial laser scanning is a promising method for providing exact 3D models of cultural heritage. Meshes, point-clouds and models should be collected and constructed. Georeferenced models can be used for tourism as a basis for virtual worlds available both in the WWW or on DVD-s...

  1. Documenting Bronze Age Akrotiri on Thera Using Laser Scanning, Image-Based Modelling and Geophysical Prospection

    NASA Astrophysics Data System (ADS)

    Trinks, I.; Wallner, M.; Kucera, M.; Verhoeven, G.; Torrejón Valdelomar, J.; Löcker, K.; Nau, E.; Sevara, C.; Aldrian, L.; Neubauer, E.; Klein, M.

    2017-02-01

    The excavated architecture of the exceptional prehistoric site of Akrotiri on the Greek island of Thera/Santorini is endangered by gradual decay, damage due to accidents, and seismic shocks, being located on an active volcano in an earthquake-prone area. Therefore, in 2013 and 2014 a digital documentation project has been conducted with support of the National Geographic Society in order to generate a detailed digital model of Akrotiri's architecture using terrestrial laser scanning and image-based modeling. Additionally, non-invasive geophysical prospection has been tested in order to investigate its potential to explore and map yet buried archaeological remains. This article describes the project and the generated results.

  2. On-line monitoring of quality by laser scanning on rolled aluminum

    NASA Astrophysics Data System (ADS)

    Schmiedl, Roland; Maneke, Gerd; Benninghoff, Heinz-Juergen

    1993-12-01

    On-line inspection of fast moving surfaces is one of the domains of laser scanning methods, especially whenever extremely small flaws are to be monitored on high quality products. Results of surface inspection on rolled aluminum based on several years' experience with several generations of inspection equipment are presented. Surface texture and characteristics of aluminum flaws require a problem related design of the laser scanner hardware for operation in the environment of a rolling mill plant. Fast intelligent data processing develops the inspection equipment to the center part of a plant-wide quality concept that strongly supports the idea of producing quality instead of only selecting quality.

  3. Monitoring gully change: A comparison of airborne and terrestrial laser scanning using a case study from Aratula, Queensland

    NASA Astrophysics Data System (ADS)

    Goodwin, Nicholas R.; Armston, John D.; Muir, Jasmine; Stiller, Issac

    2017-04-01

    Airborne laser scanning (ALS) and terrestrial laser scanning (TLS) technologies capture spatially detailed estimates of surface topography and when collected multi-temporally can be used to assess geomorphic change. The sensitivity and repeatability of ALS measurements to characterise geomorphic change in topographically complex environments such as gullies; however, remains an area lacking quantitative research. In this study, we captured coincident ALS and TLS datasets to assess their ability and synergies to detect geomorphic change for a gully located in Aratula, southeast Queensland, Australia. We initially used the higher spatial density and ranging accuracy of TLS to provide an assessment of the Digital Elevation Models (DEM) derived from ALS within a gully environment. Results indicated mean residual errors of 0.13 and 0.09 m along with standard deviation (SD) of residual errors of 0.20 and 0.16 m using pixel sizes of 0.5 and 1.0 m, respectively. The positive mean residual errors confirm that TLS data consistently detected deeper sections of the gully than ALS. We also compared the repeatability of ALS and TLS for characterising gully morphology. This indicated that the sensitivity to detect change using ALS is substantially lower than TLS, as expected, and that the ALS survey characteristics influence the ability to detect change. Notably, we found that using one ALS transect (mean density of 5 points / m2) as opposed to three transects increased the SD of residual error by approximately 30%. The supplied classification of ALS ground points was also demonstrated to misclassify gully features as non-ground, with minimum elevation filtering found to provide a more accurate DEM of the gully. The number and placement of terrestrial laser scans were also found to influence the derived DEMs. Furthermore, we applied change detection using two ALS data captures over a four year period and four TLS field surveys over an eight month period. This demonstrated that

  4. Voxel-Based Approach for Estimating Urban Tree Volume from Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Vonderach, C.; Voegtle, T.; Adler, P.

    2012-07-01

    The importance of single trees and the determination of related parameters has been recognized in recent years, e.g. for forest inventories or management. For urban areas an increasing interest in the data acquisition of trees can be observed concerning aspects like urban climate, CO2 balance, and environmental protection. Urban trees differ significantly from natural systems with regard to the site conditions (e.g. technogenic soils, contaminants, lower groundwater level, regular disturbance), climate (increased temperature, reduced humidity) and species composition and arrangement (habitus and health status) and therefore allometric relations cannot be transferred from natural sites to urban areas. To overcome this problem an extended approach was developed for a fast and non-destructive extraction of branch volume, DBH (diameter at breast height) and height of single trees from point clouds of terrestrial laser scanning (TLS). For data acquisition, the trees were scanned with highest scan resolution from several (up to five) positions located around the tree. The resulting point clouds (20 to 60 million points) are analysed with an algorithm based on voxel (volume elements) structure, leading to an appropriate data reduction. In a first step, two kinds of noise reduction are carried out: the elimination of isolated voxels as well as voxels with marginal point density. To obtain correct volume estimates, the voxels inside the stem and branches (interior voxels) where voxels contain no laser points must be regarded. For this filling process, an easy and robust approach was developed based on a layer-wise (horizontal layers of the voxel structure) intersection of four orthogonal viewing directions. However, this procedure also generates several erroneous "phantom" voxels, which have to be eliminated. For this purpose the previous approach was extended by a special region growing algorithm. In a final step the volume is determined layer-wise based on the extracted

  5. Semi-automated extraction and delineation of 3D roads of street scene from mobile laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Fang, Lina; Li, Jonathan

    2013-05-01

    Accurate 3D road information is important for applications such as road maintenance and virtual 3D modeling. Mobile laser scanning (MLS) is an efficient technique for capturing dense point clouds that can be used to construct detailed road models for large areas. This paper presents a method for extracting and delineating roads from large-scale MLS point clouds. The proposed method partitions MLS point clouds into a set of consecutive "scanning lines", which each consists of a road cross section. A moving window operator is used to filter out non-ground points line by line, and curb points are detected based on curb patterns. The detected curb points are tracked and refined so that they are both globally consistent and locally similar. To evaluate the validity of the proposed method, experiments were conducted using two types of street-scene point clouds captured by Optech's Lynx Mobile Mapper System. The completeness, correctness, and quality of the extracted roads are over 94.42%, 91.13%, and 91.3%, respectively, which proves the proposed method is a promising solution for extracting 3D roads from MLS point clouds.

  6. 3D Imaging of Porous Media Using Laser Scanning Confocal Microscopy with Application to Microscale Transport Processes

    SciTech Connect

    Fredrich, J.T.

    1999-02-10

    We present advances in the application of laser scanning confocal microscopy (LSCM) to image, reconstruct, and characterize statistically the microgeometry of porous geologic and engineering materials. We discuss technical and practical aspects of this imaging technique, including both its advantages and limitations. Confocal imaging can be used to optically section a material, with sub-micron resolution possible in the lateral and axial planes. The resultant volumetric image data, consisting of fluorescence intensities for typically {approximately}50 million voxels in XYZ space, can be used to reconstruct the three-dimensional structure of the two-phase medium. We present several examples of this application, including studying pore geometry in sandstone, characterizing brittle failure processes in low-porosity rock deformed under triaxial loading conditions in the laboratory, and analyzing the microstructure of porous ceramic insulations. We then describe approaches to extract statistical microgeometric descriptions from volumetric image data, and present results derived from confocal volumetric data sets. Finally, we develop the use of confocal image data to automatically generate a three-dimensional mesh for numerical pore-scale flow simulations.

  7. New bone formation and microstructure assessed by combination of confocal laser scanning microscopy and differential interference contrast microscopy.

    PubMed

    Yang, Xiaohong; Qin, Ling; Liang, Weiguo; Wang, Wen; Tan, Jianrong; Liang, Peihong; Xu, Jiake; Li, Siming; Cui, Shuliang

    2014-03-01

    Bone is a mineralized connective tissue that is continuously and microstructurally remodeled. Altered bone formation and microstructure arise in pathological bone conditions such as osteoporosis, osteonecrosis, fracture repair, and Paget disease of bone. A proper and objective assessment of bone formation and microstructure will provide insight into the understanding of bone pathogenesis and remodeling. Here, new bone formation ex vitro and its microstructure were evaluated in in vivo multiple sequential polychrome-labeled samples using confocal laser scanning microscopy (CLSM), which generated clearer and more reliable images of thick bone sections than conventional fluorescence microscopy (CFM). Intriguingly, fine details of the bone microstructural features, including the mineralization fronts, quiescent versus active osteons, and Volkmann's channel, were elucidated using CLSM, which defines the relationship between morphological changes and function, when combined with differential interference contrast microscopy. Furthermore, CLSM provided objective evaluations of bone formation, such as the ratio of labeled areas of new bone formation in a rabbit model when compared with CFM. Altogether, new bone formation and its microstructure can be evaluated more adequately using a combination of CLSM and DIC microscopies.

  8. Laser-scanned fluorescence of nonlased/normal, lased/normal, nonlased/carious, and lased/carious enamel

    NASA Astrophysics Data System (ADS)

    Zakariasen, Kenneth L.; Barron, Joseph R.; Paton, Barry E.

    1992-06-01

    Research has shown that low levels of CO2 laser irradiation raise enamel resistance to sub-surface demineralization. Additionally, laser scanned fluorescence analysis of enamel, as well a laser and white light reflection studies, have potential for both clinical diagnosis and comparative research investigations of the caries process. This study was designed to compare laser fluorescence and laser/white light reflection of (1) non-lased/normal with lased/normal enamel and (2) non-lased/normal with non-lased/carious and lased/carious enamel. Specimens were buccal surfaces of extracted third molars, coated with acid resistant varnish except for either two or three 2.25 mm2 windows (two window specimens: non-lased/normal, lased/normal--three window specimens: non-lased/normal, non-lased carious, lased/carious). Teeth exhibiting carious windows were immersed in a demineralizing solution for twelve days. Non-carious windows were covered with wax during immersion. Following immersion, the wax was removed, and fluorescence and laser/white light reflection analyses were performed on all windows utilizing a custom scanning laser fluorescence spectrometer which focuses light from a 25 mWatt He-Cd laser at 442 nm through an objective lens onto a cross-section >= 3 (mu) in diameter. For laser/white light reflection analyses, reflected light intensities were measured. A HeNe laser was used for laser light reflection studies. Following analyses, the teeth are sectioned bucco-lingually into 80 micrometers sections, examined under polarized light microscopy, and the lesions photographed. This permits comparison between fluorescence/reflected light values and the visualized decalcification areas for each section, and thus comparisons between various enamel treatments and normal enamel. The enamel specimens are currently being analyzed.

  9. Remodelling of the palatal dome following rapid maxillary expansion (RME): laser scan-quantifications during a low growth period.

    PubMed

    Muchitsch, A P; Winsauer, H; Wendl, B; Pichelmayer, M; Kuljuh, E; Szalay, A; Muchitsch, M

    2012-02-01

    To evaluate changes in the palatal vault after rapid maxillary expansion (RME) with bonded splint appliances. The sample comprised 24 children (12 boys and 12 girls) with mixed dentition (mean age 8.3 years; range 6.4-10.4 years). Following expansion, the splint appliance was used as a retainer for 6 months and then removed. Study casts were taken before RME (T0) and when the appliance was removed (T1). Then, 3D laser scans were taken to build complete 3D jaw models. Frontal cross sections were constructed at 53-63, 55-65 and 16-26, exported as coordinates, and finite element calculated to quantify their area, width and height. Maxillary length was also determined. Paired t-tests indicated statistically significant increases in the average palatal width (T1-T0=6.53-6.79 mm) and cross-sectional area (T1-T0=20.39-21.39 mm2) after RME (p<0.001). However, small but statistically significant reductions were observed in palatal height (T1-T0=-0.49 mm, only at 55-65; p<0.001) and length (T1-T0=-0.54 mm; p<0.01). Linear regression analysis showed statistically significant (p<0.001) direct correlations between the widths and respective cross-sectional areas. Age did not influence any measurement. The reliability of the measurements was examined with an intraclass correlation coefficient (ICC). We found an ICC>0.99 (p<0.001) for all tested parameters. Rapid maxillary expansion distinctly increased mean palatal widths and cross-sectional areas. However, palatal height (55-65) and maxillary length decreased to a small extent. © 2012 John Wiley & Sons A/S.

  10. Tissomics: two- and three-dimensional distribution of nuclei in brain tissue using laser scanning cytometry (LSC)

    NASA Astrophysics Data System (ADS)

    Lenz, Domnik; Mittag, Anja; Mosch, Birgit; Bocsi, Jozsef; Arendt, Thomas; Tarnok, Attila

    2005-03-01

    Automated quantitative (i.e. stochiometric) analysis of tissues is of eminent importance in the understanding of all interactions between cells in their natural environment. In tissue cytometry a solid trigger is necessary in order to unequivocally differentiate between cellular and non-cellular events. This can be best performed by nuclear staining. Aim of this study was to analyze a brain tissue section by laser scanning cytometry (LSC) in order to depict the threedimensional distribution of nuclei in the tissue. To this end the section was measured in several foci and different nuclei detected in several depths of the tissue were assigned to the respective layer. Frozen sections of formalin-fixed rat or human brain tissue (120μm thickness) were incubated with propidiumiodide (PI) (50μg/ml) and covered on slides. For analysis by the LSC propidiumiodide was used as trigger. After a first analysis focussed on the top of the tissue, the focus was adjusted in 30μm steps deeper into the tissue. Per analysis data of at least 50,000 cells were acquired. After finishing measurements from all depths of the field were merged, i.e. data were combined into a composite data file. With the special features of the LSC it was possible to develop a method depicting the threedimensional distribution of the nuclei in solid tissue sections. LSC can be useful tool for this relatively new field of solid tissue cytometry termed tissomics. After evaluation of methods like this, so far not available data can be analysed for diagnostic purposes. By these studies we intend to demonstrate the power of the LSC for the routine pathological use. This should add up to the bright versatility of applications for the LSC as a cytometric instrument suitable for high throughput and high content analysis.

  11. D Documentation of a Historical Monument Using Terrestrial Laser Scanning Case Study: Byzantine Water Cistern, Istanbul

    NASA Astrophysics Data System (ADS)

    Temizer, T.; Nemli, G.; Ekizce, E.; Ekizce, A.; Demir, S.; Bayram, B.; Askin, F. H.; Cobanoglu, A. V.; Yilmaz, H. F.

    2013-07-01

    3D modelling of architectural structures for monitoring, conservation and restoration alterations in heritage sites has special challenges for data acquisition and processing. The accuracy of created 3D model is very important. In general, because of the complexity of the structures, 3D modelling can be time consuming and may include some difficulties. 3D terrestrial laser scanning technique is a reliable and advantageous method for reconstruction and conservation of monuments. This technique is commonly acknowledged due to its accuracy, speed and flexibility. Terrestrial laser scanners can be used for documentation of the cultural heritage for the future. But it is also important to understand the capabilities and right conditions of use and limitations of this technology. Istanbul is a rich city with cultural monuments, buildings and cultural heritage. The presented study consists of documentation of a Byzantine water cistern situated underground the court of Sarnicli Han building. The cistern which represents a very good living example of its period has been modelled in 3D by using terrestrial laser scanning technology and the accuracy assessment of this modelling is examined.

  12. Infrared testing for engine blades crack defects with laser scanning automatic heat loading

    NASA Astrophysics Data System (ADS)

    Bai, Fengming; Song, Nuan; Wang, Lixiao

    2008-12-01

    In this paper, automatic scanning infrared laser nondestructive testing methods, such as aero-engine blades crack detection of defects; Use of thermal heating differential equations and leaves the surface temperature distribution in the infrared detection system to allow resolution under discussion laser scanning heating infrared detection engine blades crack defects. The method can be nondestructive testing of metal parts of the internal defects, such as micro-cracks, loose, porosity and so on, like the thin parts more effective. First introduced in the infrared detection system works as using laser scans of the work piece to be seized automatic heating pretreatment, to detect internal defects part of the nature and characteristics of purpose. The paper also build a two-dimensional analysis model of detected objects because of defective parts and non-defective parts of the geometry and physical properties of heat there is an obvious difference in surface temperature caused by the different response, therefore, can discuss affect of the temperature distribution of information, to determine the appropriate method. Discuss and analysis interaction between the loading heat flux density, length and depth of defects, and do some heat transfer analysis to measured the surface temperature distribution. Through load a constant heat flow to blades, the infrared detection system can obtain the surface temperature field of existence the temperature difference, which blades cracks determine the existence and its location.

  13. 3D modelling of facade features on large sites acquired by vehicle based laser scanning

    NASA Astrophysics Data System (ADS)

    Boulaassal, H.; Landes, T.; Grussenmeyer, P.

    2011-12-01

    Mobile mapping laser scanning systems have become more and more widespread for the acquisition of millions of 3D points on large and geometrically complex urban sites. Vehicle-based Laser Scanning (VLS) systems travel many kilometers while acquiring raw point clouds which are registered in real time in a common coordinate system. Improvements of the acquisition steps as well as the automatic processing of the collected point clouds are still a conundrum for researchers. This paper shows some results obtained by application, on mobile laser scanner data, of segmentation and reconstruction algorithms intended initially to generate individual vector facade models using stationary Terrestrial Laser Scanner (TLS) data. The operating algorithms are adapted so as to take into account characteristics of VLS data. The intrinsic geometry of a point cloud as well as the relative geometry between registered point clouds are different from that obtained by a static TLS. The amount of data provided by this acquisition technique is another issue. Such particularities should be taken into consideration while processing this type of point clouds. The segmentation of VLS data is carried out based on an adaptation of RANSAC algorithm. Edge points of each element are extracted by applying a second algorithm. Afterwards, the vector models of each facade element are reconstructed. In order to validate the results, large samples with different characteristics have been introduced in the developed processing chain. The limitations as well as the capabilities of each process will be emphasized in terms of geometry and processing time.

  14. Point-based and model-based geolocation analysis of airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Sefercik, Umut Gunes; Buyuksalih, Gurcan; Jacobsen, Karsten; Alkan, Mehmet

    2017-01-01

    Airborne laser scanning (ALS) is one of the most effective remote sensing technologies providing precise three-dimensional (3-D) dense point clouds. A large-size ALS digital surface model (DSM) covering the whole Istanbul province was analyzed by point-based and model-based comprehensive statistical approaches. Point-based analysis was performed using checkpoints on flat areas. Model-based approaches were implemented in two steps as strip to strip comparing overlapping ALS DSMs individually in three subareas and comparing the merged ALS DSMs with terrestrial laser scanning (TLS) DSMs in four other subareas. In the model-based approach, the standard deviation of height and normalized median absolute deviation were used as the accuracy indicators combined with the dependency of terrain inclination. The results demonstrate that terrain roughness has a strong impact on the vertical accuracy of ALS DSMs. From the relative horizontal shifts determined and partially improved by merging the overlapping strips and comparison of the ALS, and the TLS, data were found not to be negligible. The analysis of ALS DSM in relation to TLS DSM allowed us to determine the characteristics of the DSM in detail.

  15. Effective Detection of Sub-Surface Archeological Features from Laser Scanning Point Clouds and Imagery Data

    NASA Astrophysics Data System (ADS)

    Fryskowska, A.; Kedzierski, M.; Walczykowski, P.; Wierzbicki, D.; Delis, P.; Lada, A.

    2017-08-01

    The archaeological heritage is non-renewable, and any invasive research or other actions leading to the intervention of mechanical or chemical into the ground lead to the destruction of the archaeological site in whole or in part. For this reason, modern archeology is looking for alternative methods of non-destructive and non-invasive methods of new objects identification. The concept of aerial archeology is relation between the presence of the archaeological site in the particular localization, and the phenomena that in the same place can be observed on the terrain surface form airborne platform. One of the most appreciated, moreover, extremely precise, methods of such measurements is airborne laser scanning. In research airborne laser scanning point cloud with a density of 5 points/sq. m was used. Additionally unmanned aerial vehicle imagery data was acquired. Test area is located in central Europe. The preliminary verification of potentially microstructures localization was the creation of digital terrain and surface models. These models gave an information about the differences in elevation, as well as regular shapes and sizes that can be related to the former settlement/sub-surface feature. The paper presents the results of the detection of potentially sub-surface microstructure fields in the forestry area.

  16. A vision-based system for fast and accurate laser scanning in robot-assisted phonomicrosurgery.

    PubMed

    Dagnino, Giulio; Mattos, Leonardo S; Caldwell, Darwin G

    2015-02-01

    Surgical quality in phonomicrosurgery can be improved by open-loop laser control (e.g., high-speed scanning capabilities) with a robust and accurate closed-loop visual servoing systems. A new vision-based system for laser scanning control during robot-assisted phonomicrosurgery was developed and tested. Laser scanning was accomplished with a dual control strategy, which adds a vision-based trajectory correction phase to a fast open-loop laser controller. The system is designed to eliminate open-loop aiming errors caused by system calibration limitations and by the unpredictable topology of real targets. Evaluation of the new system was performed using CO(2) laser cutting trials on artificial targets and ex-vivo tissue. This system produced accuracy values corresponding to pixel resolution even when smoke created by the laser-target interaction clutters the camera view. In realistic test scenarios, trajectory following RMS errors were reduced by almost 80 % with respect to open-loop system performances, reaching mean error values around 30 μ m and maximum observed errors in the order of 60 μ m. A new vision-based laser microsurgical control system was shown to be effective and promising with significant positive potential impact on the safety and quality of laser microsurgeries.

  17. A study on 8 beam laser diode to adopt laser scanning unit

    NASA Astrophysics Data System (ADS)

    Song, Dae-Gwon; Park, Jong-Keun; Park, Jung-Hyun; Choi, An-Sik; Kim, Tae-Kyung

    2011-03-01

    In this paper, next generation 780nm monolithic individually addressable 8 beam diode laser with 10mW optical power for laser scanning unit were developed. Beam to beam spacing is 30μm and air bridge interconnection process was developed for individual operations. Measured average values of threshold current(Ith), operating current(Iop), operating voltage(Vop), slope efficiency(SE), horizontal beam divergence(FFH), vertical beam divergence(FFV), and peak wavelength(λ) from 5 specimens are 14.91mA, 28.79mA, 1.91V, 0.72mW/mA, 8.28°, 31.89°, and 785.67nm respectively. Major electro-optic parameters from 8 emitters are within 3% variation for each device. Also we measured power droop that had a strong influence on printing image at 600Hz with duty 10% and 90% and we can obtained droop rate within 2% in each channel at room temperature and 10mW power. From 500Hr reliability life test result at 70°C, we obtained Iop variation within 1% in each channel with 10mw power. From the experimental measurement results, we can assure that the developed 8 beam diode laser is suitable optical source for high speed laser scanning unit in multi-function printing system and laser beam printers.

  18. Application of laser scan microscopy in vivo for wound healing characterization

    NASA Astrophysics Data System (ADS)

    Czaika, V.; Alborova, A.; Sterry, W.; Lademann, J.; Koch, S.

    2010-09-01

    Considering the advancing age of the population, wound healing disturbances are becoming increasingly important in clinical routine. The development of wound healing creams and lotions as well as therapy control require an objective evaluation of the wound healing process, which represents the destruction of the barrier. Therefore, transepidermal water loss measurements are often carried out. These measurements have the disadvantage that they are disturbed by the interstitial fluid, which is located on the surface of chronic wounds and also by water components of the creams and lotions. Additionally, the TEWL measurements are very sensitive to temperature changes and to the anxiety of the volunteers. In the present study, in vivo laser scanning microscopy was used to analyze the reepithelialization and barrier recovery of standardized wounds produced by the suction blister technique. It was demonstrated that this non-invasive, on-line spectroscopic method allows the evaluation of the wound healing process, without any disturbances. It was found that the wound healing starts not only from the edges of the wound, but also out of the hair follicles. The in vivo laser scanning microscopy is well suited to evaluate the efficacy of wound healing creams and for therapy control.

  19. Bore-Sight Calibration of Multiple Laser Range Finders for Kinematic 3D Laser Scanning Systems.

    PubMed

    Jung, Jaehoon; Kim, Jeonghyun; Yoon, Sanghyun; Kim, Sangmin; Cho, Hyoungsig; Kim, Changjae; Heo, Joon

    2015-05-04

    The Simultaneous Localization and Mapping (SLAM) technique has been used for autonomous navigation of mobile systems; now, its applications have been extended to 3D data acquisition of indoor environments. In order to reconstruct 3D scenes of indoor space, the kinematic 3D laser scanning system, developed herein, carries three laser range finders (LRFs): one is mounted horizontally for system-position correction and the other two are mounted vertically to collect 3D point-cloud data of the surrounding environment along the system's trajectory. However, the kinematic laser scanning results can be impaired by errors resulting from sensor misalignment. In the present study, the bore-sight calibration of multiple LRF sensors was performed using a specially designed double-deck calibration facility, which is composed of two half-circle-shaped aluminum frames. Moreover, in order to automatically achieve point-to-point correspondences between a scan point and the target center, a V-shaped target was designed as well. The bore-sight calibration parameters were estimated by a constrained least squares method, which iteratively minimizes the weighted sum of squares of residuals while constraining some highly-correlated parameters. The calibration performance was analyzed by means of a correlation matrix. After calibration, the visual inspection of mapped data and residual calculation confirmed the effectiveness of the proposed calibration approach.

  20. Entropy-Based Registration of Point Clouds Using Terrestrial Laser Scanning and Smartphone GPS

    PubMed Central

    Chen, Maolin; Wang, Siying; Wang, Mingwei; Wan, Youchuan; He, Peipei

    2017-01-01

    Automatic registration of terrestrial laser scanning point clouds is a crucial but unresolved topic that is of great interest in many domains. This study combines terrestrial laser scanner with a smartphone for the coarse registration of leveled point clouds with small roll and pitch angles and height differences, which is a novel sensor combination mode for terrestrial laser scanning. The approximate distance between two neighboring scan positions is firstly calculated with smartphone GPS coordinates. Then, 2D distribution entropy is used to measure the distribution coherence between the two scans and search for the optimal initial transformation parameters. To this end, we propose a method called Iterative Minimum Entropy (IME) to correct initial transformation parameters based on two criteria: the difference between the average and minimum entropy and the deviation from the minimum entropy to the expected entropy. Finally, the presented method is evaluated using two data sets that contain tens of millions of points from panoramic and non-panoramic, vegetation-dominated and building-dominated cases and can achieve high accuracy and efficiency. PMID:28117693

  1. Effects of scanning orientation on outlier formation in 3D laser scanning of reflective surfaces

    NASA Astrophysics Data System (ADS)

    Wang, Yutao; Feng, Hsi-Yung

    2016-06-01

    Inspecting objects with reflective surfaces using 3D laser scanning is a demanded but challenging part inspection task due to undesirable specular reflections, which produce extensive outliers in the scanned point cloud. These outliers need to be removed in order to alleviate subsequent data processing issues. Many existing automatic outlier removal methods do not detect outliers according to the outlier formation properties. As a result, these methods only offer limited capabilities in removing extensive and complex outliers from scanning objects with reflective surfaces. This paper reports an empirical study which experimentally investigates the outlier formation characteristics in relation to the scanning orientation of the laser probe. The objective is to characterize the scanning orientation effects on outlier formation in order to facilitate the development of an effective outlier detection and removal method. Such an experimental investigation was hardly done before. It has been found in this work that scanning orientation can directly affect outlier extensity and occurrence in 3D laser scanning. A general guidance on proper scan path planning can then be provided with an aim to reduce the occurrence of outliers. Further, the observed dependency of outlier formation on scanning orientation can be exploited to facilitate effective and automatic outlier detection and removal.

  2. Feasibility of Machine Learning Methods for Separating Wood and Leaf Points from Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Wang, D.; Hollaus, M.; Pfeifer, N.

    2017-09-01

    Classification of wood and leaf components of trees is an essential prerequisite for deriving vital tree attributes, such as wood mass, leaf area index (LAI) and woody-to-total area. Laser scanning emerges to be a promising solution for such a request. Intensity based approaches are widely proposed, as different components of a tree can feature discriminatory optical properties at the operating wavelengths of a sensor system. For geometry based methods, machine learning algorithms are often used to separate wood and leaf points, by providing proper training samples. However, it remains unclear how the chosen machine learning classifier and features used would influence classification results. To this purpose, we compare four popular machine learning classifiers, namely Support Vector Machine (SVM), Na¨ıve Bayes (NB), Random Forest (RF), and Gaussian Mixture Model (GMM), for separating wood and leaf points from terrestrial laser scanning (TLS) data. Two trees, an Erytrophleum fordii and a Betula pendula (silver birch) are used to test the impacts from classifier, feature set, and training samples. Our results showed that RF is the best model in terms of accuracy, and local density related features are important. Experimental results confirmed the feasibility of machine learning algorithms for the reliable classification of wood and leaf points. It is also noted that our studies are based on isolated trees. Further tests should be performed on more tree species and data from more complex environments.

  3. Benchmarking the Performance of Mobile Laser Scanning Systems Using a Permanent Test Field

    PubMed Central

    Kaartinen, Harri; Hyyppä, Juha; Kukko, Antero; Jaakkola, Anttoni; Hyyppä, Hannu

    2012-01-01

    The performance of various mobile laser scanning systems was tested on an established urban test field. The test was connected to the European Spatial Data Research (EuroSDR) project “Mobile Mapping—Road Environment Mapping Using Mobile Laser Scanning”. Several commercial and research systems collected laser point cloud data on the same test field. The system comparisons focused on planimetric and elevation errors using a filtered digital elevation model, poles, and building corners as the reference objects. The results revealed the high quality of the point clouds generated by all of the tested systems under good GNSS conditions. With all professional systems properly calibrated, the elevation accuracy was better than 3.5 cm up to a range of 35 m. The best system achieved a planimetric accuracy of 2.5 cm over a range of 45 m. The planimetric errors increased as a function of range, but moderately so if the system was properly calibrated. The main focus on mobile laser scanning development in the near future should be on the improvement of the trajectory solution, especially under non-ideal conditions, using both improvements in hardware and software. Test fields are relatively easy to implement in built environments and they are feasible for verifying and comparing the performance of different systems and also for improving system calibration to achieve optimum quality.

  4. Evaluation of the surface roughness of compomer by laser scanning microscopy.

    PubMed

    Abu-Bakr, N; Han, L; Okamoto, A; Iwaku, M

    2001-06-01

    The purpose of this study was to evaluate the effect of alcoholic and low pH soft drinks on the surface roughness of compomer restorative materials. There were five tested materials and four immersion media. Specimens were immersed in test solutions for a 10-day period at a temperature of 37 degrees C. Measurement of the surface texture was carried out using a laser scanning microscope (a non-contact laser stylus tracing method). This was also used to produce the Laser Scanning Microscope Image (LSM Image). Specimens immersed in orange juice and whisky displayed higher values for Ra & Rz than specimens immersed in soft drinks and deionized water. LSM Image showed a difference between the control and the examined side, especially for specimens immersed in low pH soft drinks this could be due to the erosive effect of the media. Alcoholic and low pH soft drinks caused deterioration of the materials surface, which may lead to a clinically detectable rough and dull surface.

  5. Measuring calcium levels in Saprolegnia ferax using the two-photon laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Lilje, Osu

    2003-07-01

    xThe genus Saprolegnia in the phylum Oomycetes contains a number of parasitic species that can cause a range of important animal diseases. The aim of this study was to measure the calcium gradient, one of the growth regulating mechanisms, in Saprolegnia ferax. The two-photon laser scanning microscope allowed for detailed physiological measurements of calcium levels along the fungus-like hyphae of S.ferax. Calcium concentration was determined by making ratiometric calculation of emission levels of the calcium-sensitive fluorochrome Indo-1 at 485nm to 405nm. The calculated values were compared to the intracellular calibration values. The advantage of the two-photon laser scanning microscope is that it allows minor changes in concentration to be detected in highly localized regions of the hyphae. The technique used in this study minimized background and autofluorescence and therefore allowed for more accurate changes in intracellular Ca2+ concentration to be detected. The calcium concentration at the hyphal tip and 5, 10 and 40μm distal to the tip were calculated to be 65, 17, 38 and 20nM respectively, confirming other studies that suggest a tip-high calcium gradient.

  6. Entropy-Based Registration of Point Clouds Using Terrestrial Laser Scanning and Smartphone GPS.

    PubMed

    Chen, Maolin; Wang, Siying; Wang, Mingwei; Wan, Youchuan; He, Peipei

    2017-01-20

    Automatic registration of terrestrial laser scanning point clouds is a crucial but unresolved topic that is of great interest in many domains. This study combines terrestrial laser scanner with a smartphone for the coarse registration of leveled point clouds with small roll and pitch angles and height differences, which is a novel sensor combination mode for terrestrial laser scanning. The approximate distance between two neighboring scan positions is firstly calculated with smartphone GPS coordinates. Then, 2D distribution entropy is used to measure the distribution coherence between the two scans and search for the optimal initial transformation parameters. To this end, we propose a method called Iterative Minimum Entropy (IME) to correct initial transformation parameters based on two criteria: the difference between the average and minimum entropy and the deviation from the minimum entropy to the expected entropy. Finally, the presented method is evaluated using two data sets that contain tens of millions of points from panoramic and non-panoramic, vegetation-dominated and building-dominated cases and can achieve high accuracy and efficiency.

  7. Laser Scanning of a Monolithic Column during Processing in Middle Egypt

    NASA Astrophysics Data System (ADS)

    Ajioka, O.; Hori, Y.

    2011-09-01

    From ancient quarries around Akoris in Middle Egypt, which belong to the Ptolemaic and Roman periods, the stone blocks could be carried to the working area located in the outside of the city. Those blocks included a giant monolithic column measured approximately 14m in length, which had been cracked for reasons unknown and must have contributed to disuse of monolith. The first deal is a comparison of plans drawn by the point clouds by laser scanning with those coming from plane-tabling, which had been one of popular methods for measuring in the last century. This part shows how the laser scanning technology is useful in far better measuring and documentation of the site. The second discuss is about a detailed assessment of the procedure of processing through the observation of chisel marks and the detail analysis about the 3 dimensional data. In the result, we are succeed to show the restoration of the procedure of the proceedings using guidelines and a wooden curve since we concentrate attention on the point of abstracting the centre line and shaving the surface into the round shape.

  8. LIDAR and Ins Fusion in Periods of GPS Outages for Mobile Laser Scanning Mapping Systems

    NASA Astrophysics Data System (ADS)

    Klein, I.; Filin, S.

    2011-09-01

    Mobile laser scanning systems are becoming an increasingly popular means to obtain 3D coverage on a large scale. To perform the mapping, the exact position of the vehicle must be known throughout the trajectory. Exact position is achieved via integration of Global Positioning Systems (GPS) and Inertial Navigation Systems (INS). Yet, in urban environments, cases of complete or even partial GPS outages may occur leaving the navigation solution to rely only on the INS. The INS navigation solution degrades with time as the Inertial Measurement Unit (IMU) measurements contains noise, which permeates into the navigation equations. Degradation of the position determination leads to loss of data in such segments. To circumvent such drift and its effects, we propose fusing INS with lidar data by using building edges. This detection of edges is then translated into position data, which is used as an aiding to the INS. It thereby enables the determination of the vehicle position with a satisfactory level accuracy, sufficient to perform the laser-scanning based mapping in those outage periods.

  9. Bore-Sight Calibration of Multiple Laser Range Finders for Kinematic 3D Laser Scanning Systems

    PubMed Central

    Jung, Jaehoon; Kim, Jeonghyun; Yoon, Sanghyun; Kim, Sangmin; Cho, Hyoungsig; Kim, Changjae; Heo, Joon

    2015-01-01

    The Simultaneous Localization and Mapping (SLAM) technique has been used for autonomous navigation of mobile systems; now, its applications have been extended to 3D data acquisition of indoor environments. In order to reconstruct 3D scenes of indoor space, the kinematic 3D laser scanning system, developed herein, carries three laser range finders (LRFs): one is mounted horizontally for system-position correction and the other two are mounted vertically to collect 3D point-cloud data of the surrounding environment along the system’s trajectory. However, the kinematic laser scanning results can be impaired by errors resulting from sensor misalignment. In the present study, the bore-sight calibration of multiple LRF sensors was performed using a specially designed double-deck calibration facility, which is composed of two half-circle-shaped aluminum frames. Moreover, in order to automatically achieve point-to-point correspondences between a scan point and the target center, a V-shaped target was designed as well. The bore-sight calibration parameters were estimated by a constrained least squares method, which iteratively minimizes the weighted sum of squares of residuals while constraining some highly-correlated parameters. The calibration performance was analyzed by means of a correlation matrix. After calibration, the visual inspection of mapped data and residual calculation confirmed the effectiveness of the proposed calibration approach. PMID:25946627

  10. Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images

    PubMed Central

    BAJCSY, P.; LEE, S-C.; LIN, A.; FOLBERG, R.

    2006-01-01

    Summary The distribution of looping patterns of laminin in uveal melanomas and other tumours has been associated with adverse outcome. Moreover, these patterns are generated by highly invasive tumour cells through the process of vasculogenic mimicry and are not therefore blood vessels. Nevertheless, these extravascular matrix patterns conduct plasma. The three-dimensional (3D) configuration of these laminin-rich patterns compared with blood vessels has been the subject of speculation and intensive investigation. We have developed a method for the 3D reconstruction of volume for these extravascular matrix proteins from serial paraffin sections cut at 4 μm thicknesses and stained with a fluorescently labelled antibody to laminin (Maniotis et al., 2002). Each section was examined via confocal laser-scanning focal microscopy (CLSM) and 13 images were recorded in the Z-dimension for each slide. The input CLSM imagery is composed of a set of 3D subvolumes (stacks of 2D images) acquired at multiple confocal depths, from a sequence of consecutive slides. Steps for automated reconstruction included (1) unsupervised methods for selecting an image frame from a subvolume based on entropy and contrast criteria, (2) a fully automated registration technique for image alignment and (3) an improved histogram equalization method that compensates for spatially varying image intensities in CLSM imagery due to photo-bleaching. We compared image alignment accuracy of a fully automated method with registration accuracy achieved by human subjects using a manual method. Automated 3D volume reconstruction was found to provide significant improvement in accuracy, consistency of results and performance time for CLSM images acquired from serial paraffin sections. PMID:16438687

  11. Robust statistical approaches for local planar surface fitting in 3D laser scanning data

    NASA Astrophysics Data System (ADS)

    Nurunnabi, Abdul; Belton, David; West, Geoff

    2014-10-01

    This paper proposes robust methods for local planar surface fitting in 3D laser scanning data. Searching through the literature revealed that many authors frequently used Least Squares (LS) and Principal Component Analysis (PCA) for point cloud processing without any treatment of outliers. It is known that LS and PCA are sensitive to outliers and can give inconsistent and misleading estimates. RANdom SAmple Consensus (RANSAC) is one of the most well-known robust methods used for model fitting when noise and/or outliers are present. We concentrate on the recently introduced Deterministic Minimum Covariance Determinant estimator and robust PCA, and propose two variants of statistically robust algorithms for fitting planar surfaces to 3D laser scanning point cloud data. The performance of the proposed robust methods is demonstrated by qualitative and quantitative analysis through several synthetic and mobile laser scanning 3D data sets for different applications. Using simulated data, and comparisons with LS, PCA, RANSAC, variants of RANSAC and other robust statistical methods, we demonstrate that the new algorithms are significantly more efficient, faster, and produce more accurate fits and robust local statistics (e.g. surface normals), necessary for many point cloud processing tasks. Consider one example data set used consisting of 100 points with 20% outliers representing a plane. The proposed methods called DetRD-PCA and DetRPCA, produce bias angles (angle between the fitted planes with and without outliers) of 0.20° and 0.24° respectively, whereas LS, PCA and RANSAC produce worse bias angles of 52.49°, 39.55° and 0.79° respectively. In terms of speed, DetRD-PCA takes 0.033 s on average for fitting a plane, which is approximately 6.5, 25.4 and 25.8 times faster than RANSAC, and two other robust statistical methods, respectively. The estimated robust surface normals and curvatures from the new methods have been used for plane fitting, sharp feature

  12. Laser Scanning for the definition of high resolution topography in the Apuan Alps (IT) marble district

    NASA Astrophysics Data System (ADS)

    Riccucci, Silvia; Salvini, Riccardo; Francioni, Mirko

    2010-05-01

    The present paper describes the results of five laser scanning surveys performed by a Leica™ ScanStation2 with the aim of producing an high definition topography of a quarry, at the scale of 1:1,000. The project comes from a joint research carried out by the Authors in collaboration with the Local Sanitary Unit Agency (ASL n.1) of Massa and Carrara (IT). The main objective of this work has been the survey of both the exploited quarry walls and the upper residual and natural slopes. The area of interest is characterized by several quarry fronts which develop to variable and alternate directions to create very evident rock spurs, from NW-SE to NE-SW trending for a total wideness of about 2 hectares. Moreover, the quarry walls are sub-vertical and sometimes overhang by a total height of 100 m in respect to the quarry floor. Differential GPS and orthometric correction have been applied in order to co-register and to georeference the five point clouds; for these purposes a series of optical targets have been measured using a Laser Total Station. The subsequent phase has been the mesh construction and editing, from which a topographic map, 25 cm equidistance contours lines, has been created. The planimetric map shows the position and the geometry of crests, banks, escarpments, walls and all others exploitation features and the characteristics of the upper natural slopes. Morphological profiles along the maximum slope have been realized in order to better plan the future extractive activities according to the regional law. In order to make easier the prospective observation of detailed and overall areas, 3D views of multi-directional orientation have been realized. The produced data has been published by using the free LeicaTM TruView plug-in for Internet Explorer in a way to easily view the photographs and to measure the laser scan point clouds. Processing results have highlighted the higher spatial resolution of data coming from laser scanning in respect to the

  13. Gravity combined with laser-scan in Grotta Gigante: a benchmark cave for gravity studies

    NASA Astrophysics Data System (ADS)

    Pivetta, Tommaso; Braitenberg, Carla

    2014-05-01

    Laser scanning has become one of the most important topographic techniques in the last decades, due to its ability to reconstruct complex surfaces with high resolution and precision and due to its fast acquisition time. Recently a laser-scan survey has been acquired (Fingolo et al., 2011) in the "Grotta Gigante" cave near Trieste, Italy, the biggest cave worldwide according to the Guinness Awards. In this paper this survey is used to obtain a 3D discretization of the cave with prisms. Then through this new model, with the densities derived from campaign measurements, the exact gravimetric effect of the structure was computed (Nagy et al., 2000) and compared with the gravity observation at the surface. The transition from the cloud of laser-scan points to the prism model was carried out by different computer elaborations; first of all the reduction of the data density through an averaging process that allows to pass from over 10000 points/m2 to less than 10points/m2. Then the whole dataset was filtered from the outliers by the means of a simple quadratic surface that fit the data (Turner, 1999). The reduced data points should be divided into the 2 surfaces of top and bottom, that are used to define the prisms. This step was performed using the local regression method (Loess) to calculate a surface located halfway between top and bottom points. Once the top and bottom interfaces were obtained it was possible to get the final prism representation and calculate the gravity signal. The observed Bouguer field is explained very well by our model and the residuals are used to evaluate possible secondary caves. The final prism model together with the gravity database on surface and inside the cave form a perfect benchmark to test forward and inverse potential field algorithms. References Fingolo M., Facco L., Ceccato A., Breganze C., Paganini P., Cezza M., Grotta Gigante di Trieste. Tra realtà virtuale e rilievi 3D ad alta risoluzione, Veneto Geologi, 75, pp.21-25, 2011

  14. Capturing and modelling high-complex alluvial topography with UAS-borne laser scanning

    NASA Astrophysics Data System (ADS)

    Mandlburger, Gottfried; Wieser, Martin; Pfennigbauer, Martin

    2015-04-01

    Due to fluvial activity alluvial forests are zones of highest complexity and relief energy. Alluvial forests are dominated by new and pristine channels in consequence of current and historic flood events. Apart from topographic features, the vegetation structure is typically very complex featuring, both, dense under story as well as high trees. Furthermore, deadwood and debris carried from upstream during periods of high discharge within the river channel are deposited in these areas. Therefore, precise modelling of the micro relief of alluvial forests using standard tools like Airborne Laser Scanning (ALS) is hardly feasible. Terrestrial Laser Scanning (TLS), in turn, is very time consuming for capturing larger areas as many scan positions are necessary for obtaining complete coverage due to view occlusions in the forest. In the recent past, the technological development of Unmanned Arial Systems (UAS) has reached a level that light-weight survey-grade laser scanners can be operated from these platforms. For capturing alluvial topography this could bridge the gap between ALS and TLS in terms of providing a very detailed description of the topography and the vegetation structure due to the achievable very high point density of >100 points per m2. In our contribution we demonstrate the feasibility to apply UAS-borne laser scanning for capturing and modelling the complex topography of the study area Neubacher Au, an alluvial forest at the pre-alpine River Pielach (Lower Austria). The area was captured with Riegl's VUX-1 compact time-of-flight laser scanner mounted on a RiCopter (X-8 array octocopter). The scanner features an effective scan rate of 500 kHz and was flown in 50-100 m above ground. At this flying height the laser footprint is 25-50 mm allowing mapping of very small surface details. Furthermore, online waveform processing of the backscattered laser energy enables the retrieval of multiple targets for single laser shots resulting in a dense point cloud of

  15. Concomitant use of Congo red staining and confocal laser scanning microscopy to detect amyloidosis in oral biopsy: A clinicopathological study of 16 patients.

    PubMed

    Scivetti, Michele; Favia, Gianfranco; Fatone, Laura; Maiorano, Eugenio; Crincoli, Vito

    2016-01-01

    Twenty oral biopsies from 16 patients were analyzed both by traditional microscopy and by confocal laser scanning microscopy. Using conventional histopathological techniques, the diagnosis of amyloidosis was confirmed only in 15 biopsies. Using confocal laser scanning microscopy, amyloid deposits were detected in all of the samples. The current study shows that confocal laser scanning analysis helps to identify minimal amyloid deposits that could be overlooked using traditional microscopy, thus raising the sensitivity of oral biopsy up to 100%.

  16. The reality of virtual anthropology: Comparing digitizer and laser scan data collection methods for the quantitative assessment of the cranium.

    PubMed

    Algee-Hewitt, Bridget F B; Wheat, Amber D

    2016-05-01

    The use of geometric morphometry to study cranial variation has steadily grown in appeal over the past decade in biological anthropology. Publication trends suggest that the most popular methods for three-dimensional data acquisition involve landmark-based coordinate data collection using a digitizer. Newer laser scan approaches are seeing increasing use, owing to the benefits that densely sampled data offer. While both of these methods have their utility, research that investigates their compatibility is lacking. The purpose of this project is to compare, quantitatively, craniometrics collected with a digitizer against data extracted from laser scans using the same individuals and laboratory conditions. Three-dimensional (x,y,z) coordinates and traditional inter-landmark distances (ILDs) were obtained with a Microscribe digitizer and 360° color models produced from NextEngine laser scans for 38 adult crania representing five cemeteries from the ADBOU skeletal collection in Denmark. Variance-based tests were performed to evaluate the disagreement between data collected with a digitizer and from laser scan models. Consideration was given to differences among landmarks by type, between ILDs calculated from landmark coordinates, and in morphology for the cemetery populations. Further, the reliability of laser scan data collection was assessed by intra-observer error tests. Researchers should be aware of the potential error associated with the use of Types II and III landmarks and the limitations on reliability imposed by object-to-scanner placement. This project reveals how laser scans can provide a valuable digital archive of cranial material that can be reasonably exploited for the "virtual" collection of coordinates and the calculation of ILDs. © 2015 Wiley Periodicals, Inc.

  17. Application of a hybrid 3D-2D laser scanning system to the characterization of slate slabs.

    PubMed

    López, Marcos; Martínez, Javier; Matías, José María; Vilán, José Antonio; Taboada, Javier

    2010-01-01

    Dimensional control based on 3D laser scanning techniques is widely used in practice. We describe the application of a hybrid 3D-2D laser scanning system to the characterization of slate slabs with structural defects that are difficult for the human eye to characterize objectively. Our study is based on automating the process using a 3D laser scanner and a 2D camera. Our results demonstrate that the application of this hybrid system optimally characterizes slate slabs in terms of the defects described by the Spanish UNE-EN 12326-1 standard.

  18. Application of a Hybrid 3D-2D Laser Scanning System to the Characterization of Slate Slabs

    PubMed Central

    López, Marcos; Martínez, Javier; Matías, José María; Vilán, José Antonio; Taboada, Javier

    2010-01-01

    Dimensional control based on 3D laser scanning techniques is widely used in practice. We describe the application of a hybrid 3D-2D laser scanning system to the characterization of slate slabs with structural defects that are difficult for the human eye to characterize objectively. Our study is based on automating the process using a 3D laser scanner and a 2D camera. Our results demonstrate that the application of this hybrid system optimally characterizes slate slabs in terms of the defects described by the Spanish UNE-EN 12326-1 standard. PMID:22219696

  19. Application of laser scanning technique in earthquake protection of Istanbul's historical heritage buildings

    NASA Astrophysics Data System (ADS)

    Çaktı, Eser; Ercan, Tülay; Dar, Emrullah

    2017-04-01

    Istanbul's vast historical and cultural heritage is under constant threat of earthquakes. Historical records report repeated damages to the city's landmark buildings. Our efforts towards earthquake protection of several buildings in Istanbul involve earthquake monitoring via structural health monitoring systems, linear and non-linear structural modelling and analysis in search of past and future earthquake performance, shake-table testing of scaled models and non-destructive testing. More recently we have been using laser technology in monitoring structural deformations and damage in five monumental buildings which are Hagia Sophia Museum and Fatih, Sultanahmet, Süleymaniye and Mihrimah Sultan Mosques. This presentation is about these efforts with special emphasis on the use of laser scanning in monitoring of edifices.

  20. Trypan blue as a fluorochrome for confocal laser scanning microscopy of arbuscular mycorrhizae in three mangroves.

    PubMed

    Kumar, T; Majumdar, A; Das, P; Sarafis, V; Ghose, M

    2008-06-01

    Roots of three mangroves, Acanthus ilicifolius, Ceriops tagal and Excoecaria agallocha, collected from forests of the Sundarbans of India were stained with trypan blue to observe arbuscular mycorrhizal colonization. Spores of arbuscular mycorrhizal fungi isolated from rhizospheric soil, collected together with the root samples, also were stained for testing the suitability of the dye as a fluorochrome. Confocal laser scanning microscopy images were constructed. A. ilicifolius and E. agallocha exhibited "Arum" type colonization with highly branched arbuscules, whereas C. tagal showed "Paris" type association with clumped and collapsed arbuscules. We demonstrated that trypan blue is a suitable fluorochrome for staining arbuscular mycorrhizal fungal spores, fungal hyphae, arbuscules and vesicles, which presumably have a considerable amount of surface chitin. It appears that as the integration of chitin into the fungal cell wall changes, its accessibility to trypan blue dye also changes.

  1. Adaptive optics loop for en-face optical coherence tomography and laser scanning confocal microscopy

    NASA Astrophysics Data System (ADS)

    Tuohy, Simon; Bradu, Adrian; Harms, Fabrice; Chateau, Nicolas; Podoleanu, Adrian G.

    2008-09-01

    The capabilities of a novel deformable mirror and wave-front sensor combination to correct aberrations in microscopy are analyzed. The deformable mirror, (Mirao52-D, Imagine Eyes) is incorporated with a Shack-Hartmann sensor (HASO, Imagine Optic) within a complex imaging system able to produce simultaneous en-face Optical Coherence Tomography and Laser Scanning Confocal Microscopy images as well as B-scan OCT images. A large angle imaging along one of the scanning directions is demonstrated using the AO loop to correct for the interface optics aberration. The image is split into three panels, and each panel is imaged using its own set of corrections. The three images are subsequently collaged into a final image and preliminary promising results are presented.

  2. An alternative method of promoter assessment by confocal laser scanning microscopy.

    PubMed

    Sahoo, Dipak K; Ranjan, Rajiv; Kumar, Deepak; Kumar, Alok; Sahoo, Bhabani S; Raha, Sumita; Maiti, Indu B; Dey, Nrisingha

    2009-10-01

    A rapid and useful method of promoter activity analysis using techniques of confocal laser scanning microscopy (CLSM) is described in the present study. The activities of some pararetroviral promoters such as CaMV35S (Cauliflower mosaic virus), FMVSgt3 (Figwort mosaic virus sub-genomic transcript) and MMVFLt12 (Mirabilis mosaic virus full-length transcript) coupled to GFP (green fluorescent protein) and GUS (beta-glucuronidase) reporter genes were determined simultaneously by the CLSM technique and other available conventional methods for reporter gene assay based on relevant biochemical and molecular approaches. Consistent and comparable results obtained by CLSM as well as by other conventional assay methods confirm the effectiveness of the CLSM approach for assessment of promoter activity. Hence the CLSM method can be suggested as an alternative way for promoter analysis on the basis of high throughput.

  3. 3-D reconstruction of neurons from multichannel confocal laser scanning image series.

    PubMed

    Wouterlood, Floris G

    2005-08-01

    A confocal laser scanning microscope (CLSM) collects information from a thin, focal plane and ignores out-of-focus information. The operator configures separate channels (laser, filters, detector settings) for each fluorochrome used in a particular experiment. Then, 3-D reconstructions are made from Z-series of confocal images: one series per channel. Channel signal separation is extremely important and measures to avoid bleaching are vital. Post-acquisition deconvolution of the image series is then performed to increase resolution. In the 3-D reconstruction program described in this unit, reconstructions can be inspected in real time from any viewing angle. By altering viewing angles and by switching channels off and on, the spatial relationship of 3-D-reconstructed structures with respect to structures seen in other channels can be studied. Since each brand of CLSM, computer program, and 3-D reconstruction package has its own proprietary set of procedures, a general approach is provided wherever possible.

  4. The Use of Computer Vision Algorithms for Automatic Orientation of Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Markiewicz, Jakub Stefan

    2016-06-01

    The paper presents analysis of the orientation of terrestrial laser scanning (TLS) data. In the proposed data processing methodology, point clouds are considered as panoramic images enriched by the depth map. Computer vision (CV) algorithms are used for orientation, which are applied for testing the correctness of the detection of tie points and time of computations, and for assessing difficulties in their implementation. The BRISK, FASRT, MSER, SIFT, SURF, ASIFT and CenSurE algorithms are used to search for key-points. The source data are point clouds acquired using a Z+F 5006h terrestrial laser scanner on the ruins of Iłża Castle, Poland. Algorithms allowing combination of the photogrammetric and CV approaches are also presented.

  5. Low cost and compact nonlinear (SHG/TPE) laser scanning endoscope for bio-medical application

    NASA Astrophysics Data System (ADS)

    Liu, Jiayun; Lim, Ken Choong; Li, Hao; Seck, Hon Luen; Yu, Xia; Kok, Shaw Wei; Zhang, Ying

    2015-03-01

    Two-photon fluorescence (TPE) and second harmonic generation (SHG) can been used to extract biological information from tissues at the molecular level, which is blind to traditional microscopes. Through these two image contrast mechanisms, a nonlinear laser scanning endoscope (NLSE) is able to image tissue cells and the extra cellular matrix (ECM) through a special fiber and miniaturized scanner without the requirement of poisonous chemical staining. Therefore, NLSE reserves high potential for in-vivo pathological study and disease diagnosis. However, the high cost and bulky size of a NLSE system has become one of the major issues preventing this technology from practical clinical operation. In this paper, we report a fiber laser based multi-modality NLSE system with compact size and low cost, ideal for in-vivo applications in clinical environments. The demonstration of the developed NLSE nonlinear imaging capability on different bio-structures in liver, retina and skin are also presented.

  6. Confocal laser scanning microscopy detection of chlorophylls and carotenoids in chloroplasts and chromoplasts of tomato fruit.

    PubMed

    D'Andrea, Lucio; Amenós, Montse; Rodríguez-Concepción, Manuel

    2014-01-01

    Plant cells are unique among eukaryotic cells because of the presence of plastids, including chloroplasts and chromoplasts. Chloroplasts are found in green tissues and harbor the photosynthetic machinery (including chlorophyll molecules), while chromoplasts are present in non-photosynthetic tissues and accumulate large amounts of carotenoids. During tomato fruit development, chloroplasts are converted into chromoplasts that accumulate high levels of lycopene, a linear carotenoid responsible for the characteristic red color of ripe fruit. Here, we describe a simple and fast method to detect both types of fully differentiated plastids (chloroplasts and chromoplasts), as well as intermediate stages, in fresh tomato fruits. The method is based on the differential autofluorescence of chlorophylls and carotenoids (lycopene) detected by Confocal Laser Scanning Microscopy.

  7. Single Tree Detection from Airborne Laser Scanning Data Using a Marked Point Process Based Method

    NASA Astrophysics Data System (ADS)

    Zhang, J.; Sohn, G.; Brédif, M.

    2013-05-01

    Tree detection and reconstruction is of great interest in large-scale city modelling. In this paper, we present a marked point process model to detect single trees from airborne laser scanning (ALS) data. We consider single trees in ALS recovered canopy height model (CHM) as a realization of point process of circles. Unlike traditional marked point process, we sample the model in a constraint configuration space by making use of image process techniques. A Gibbs energy is defined on the model, containing a data term which judge the fitness of the model with respect to the data, and prior term which incorporate the prior knowledge of object layouts. We search the optimal configuration through a steepest gradient descent algorithm. The presented hybrid framework was test on three forest plots and experiments show the effectiveness of the proposed method.

  8. Characterization of acoustic lenses with the Foucault test by confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Ahmed Mohamed, E. T.; Abdelrahman, A.; Pluta, M.; Grill, W.

    2010-03-01

    In this work, the Foucault knife-edge test, which has traditionally been known as the classic test for optical imaging devices, is used to characterize an acoustic lens for operation at 1.2 GHz. A confocal laser scanning microscope (CLSM) was used as the illumination and detection device utilizing its pinhole instead of the classical knife edge that is normally employed in the Foucault test. Information about the geometrical characteristics, such as the half opening angle of the acoustic lens, were determined as well as the quality of the calotte of the lens used for focusing. The smallest focal spot size that could be achieved with the examined lens employed as a spherical reflector was found to be about 1 μm. By comparison to the idealized resolution a degradation of about a factor of 2 can be deduced. This limits the actual quality of the acoustic focus.

  9. Evaluation of the Cytotoxic Behavior of Fungal Extracellular Synthesized Ag Nanoparticles Using Confocal Laser Scanning Microscope

    PubMed Central

    Salaheldin, Taher A.; Husseiny, Sherif M.; Al-Enizi, Abdullah M.; Elzatahry, Ahmed; Cowley, Alan H.

    2016-01-01

    Silver nanoparticles have been synthesized by subjecting a reaction medium to a Fusarium oxysporum biomass at 28 °C for 96 h. The biosynthesized Ag nanoparticles were characterized on the basis of their anticipated peak at 405 nm using UV-Vis-NIR spectroscopy. Structural confirmation was evident from the characteristic X-ray diffraction (XRD) pattern, high-resolution transmission electron Microscopy (HRTEM) and the particle size analyzer. The Ag nanoparticles were of dimension 40 ± 5 nm and spherical in shape. The study mainly focused on using the confocal laser scanning microscope (CLSM) to examine the cytotoxic activities of fungal synthesized Ag nanoparticles on a human breast carcinoma cell line MCF7 cell, which featured remarkable vacuolation, thus indicating a potent cytotoxic activity. PMID:26950118

  10. Parallel deconvolution of large 3D images obtained by confocal laser scanning microscopy.

    PubMed

    Pawliczek, Piotr; Romanowska-Pawliczek, Anna; Soltys, Zbigniew

    2010-03-01

    Various deconvolution algorithms are often used for restoration of digital images. Image deconvolution is especially needed for the correction of three-dimensional images obtained by confocal laser scanning microscopy. Such images suffer from distortions, particularly in the Z dimension. As a result, reliable automatic segmentation of these images may be difficult or even impossible. Effective deconvolution algorithms are memory-intensive and time-consuming. In this work, we propose a parallel version of the well-known Richardson-Lucy deconvolution algorithm developed for a system with distributed memory and implemented with the use of Message Passing Interface (MPI). It enables significantly more rapid deconvolution of two-dimensional and three-dimensional images by efficiently splitting the computation across multiple computers. The implementation of this algorithm can be used on professional clusters provided by computing centers as well as on simple networks of ordinary PC machines.

  11. Using Mobile Laser Scanning Data for Features Extraction of High Accuracy Driving Maps

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Liu, Yuan; Liang, Fuxun; Dong, Zhen

    2016-06-01

    High Accuracy Driving Maps (HADMs) are the core component of Intelligent Drive Assistant Systems (IDAS), which can effectively reduce the traffic accidents due to human error and provide more comfortable driving experiences. Vehicle-based mobile laser scanning (MLS) systems provide an efficient solution to rapidly capture three-dimensional (3D) point clouds of road environments with high flexibility and precision. This paper proposes a novel method to extract road features (e.g., road surfaces, road boundaries, road markings, buildings, guardrails, street lamps, traffic signs, roadside-trees, power lines, vehicles and so on) for HADMs in highway environment. Quantitative evaluations show that the proposed algorithm attains an average precision and recall in terms of 90.6% and 91.2% in extracting road features. Results demonstrate the efficiencies and feasibilities of the proposed method for extraction of road features for HADMs.

  12. In vivo observation of papillae of the human tongue using confocal laser scanning microscopy.

    PubMed

    Just, Tino; Stave, Joachim; Pau, Hans Wilhelm; Guthoff, Rudolf

    2005-01-01

    The aim of this investigation was to visualize the epithelial structures of the tongue using confocal laser scanning microscopy (LSM). The human tongue epithelium of 28 healthy subjects, aged 21-67 years, mean age 38 years, 14 women and 14 men, was examined in vivo by LSM. Using LSM, a combination of the Heidelberg Retina Tomograph HRT II and the Rostock Cornea Module, up to 800-fold magnifications were obtained. On the tongue surface both filiform and fungiform papillae and their taste pores were easily identified. The epithelium of the tongue with its subcellular structures could be observed up to a depth of 50 microm, cellular structures up to 150 microm and subepithelial vessels up to 300 microm. Additionally the papillary crests and blood flow were visible. Confocal LSM seems suitable for noninvasive in vivo examination of the tongue. The hydraulic z scan, the manual start setting and the measurement of the depth allow a clear classification of the observed structures.

  13. Correlation-based technique for automated tunable diode laser scan stabilization

    NASA Technical Reports Server (NTRS)

    May, Randy D.

    1992-01-01

    A software-based method for real-time, active stabilization of tunable diode laser spectral scans is described. The procedure is suitable for use with field and laboratory instrumentation where automated, unattended spectrometer operation is required. An autocorrelation of two high-resolution reference gas infrared spectra is computed at regular intervals, and the location of the maximum value of the autocorrelation provides the relative abscissa shift between the spectra. Small adjustments to the laser scan parameters are thereby made to ensure that drifts in the laser output frequency are tracked and compensated. Calculations required for stabilization of a 512-point spectrum can be completed in under 25 ms using an inexpensive, moderate-speed, array processor installed in a PC.

  14. Static terrestrial laser scanning of juvenile understory trees for field phenotyping

    NASA Astrophysics Data System (ADS)

    Wang, Huanhuan; Lin, Yi

    2014-11-01

    This study was to attempt the cutting-edge 3D remote sensing technique of static terrestrial laser scanning (TLS) for parametric 3D reconstruction of juvenile understory trees. The data for test was collected with a Leica HDS6100 TLS system in a single-scan way. The geometrical structures of juvenile understory trees are extracted by model fitting. Cones are used to model trunks and branches. Principal component analysis (PCA) is adopted to calculate their major axes. Coordinate transformation and orthogonal projection are used to estimate the parameters of the cones. Then, AutoCAD is utilized to simulate the morphological characteristics of the understory trees, and to add secondary branches and leaves in a random way. Comparison of the reference values and the estimated values gives the regression equation and shows that the proposed algorithm of extracting parameters is credible. The results have basically verified the applicability of TLS for field phenotyping of juvenile understory trees.

  15. The Opals Data Manager - Efficient Data Management for Processing Large Airborne Laser Scanning Projects

    NASA Astrophysics Data System (ADS)

    Otepka, J.; Mandlburger, G.; Karel, W.

    2012-07-01

    The fast measurement rate of today's Airborne Laser Scanners results in billions of points for single ALS projects. Efficient algorithms and data management methods are, therefore, a precondition for successful project handling. The software package OPALS (Orientation and Processing of Airborne Laser Scanning data) was especially designed to meet those criteria. Central core of the package is the OPALS Data Manager (ODM). It provides both, fast spatial access to huge point clouds, as well as a flexible attribute schema to store additional point related quantities. Concepts of the spatial data organization and implementation details about the attribute handling are presented. Additionally, design rationales of the ODM, its file format and the system performance are described.

  16. Geometric validation of a mobile laser scanning system for urban applications

    NASA Astrophysics Data System (ADS)

    Guan, Haiyan; Li, Jonathan; Yu, Yongtao; Liu, Yan

    2016-03-01

    Mobile laser scanning (MLS) technologies have been actively studied and implemented over the past decade, as their application fields are rapidly expanding and extending beyond conventional topographic mapping. Trimble's MX-8, as one of the MLS systems in the current market, generates rich survey-grade laser and image data for urban surveying. The objective of this study is to evaluate whether Trimble MX-8 MLS data satisfies the accuracy requirements of urban surveying. According to the formula of geo-referencing, accuracies of navigation solution and laser scanner determines the accuracy of the collected LiDAR point clouds. Two test sites were selected to test the performance of Trimble MX-8. Those extensive tests confirm that Trimble MX-8 offers a very promising tool to survey complex urban areas.

  17. Further study of trichosanthin's effect on mouse embryos with confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Xu, Hui; Zhang, Chunyang; Ma, Hui; Chen, Die Yan

    2001-09-01

    Trichosanthin(TCS), a ribosome inactivating protein extracted from the root tuber of a traditional Chinese medicine herb Tian Huo Fen(THF), possessed abortifacient, anti-tumor and anti-human immunodeficiency virus(HIV) activities. For centuries in China, THF has been used as an effective folk medicine to terminate early and midtrimester pregnancies and to treat ectopic pregnancies, hydatidiform moles and trophoblastic tumor. We observed the changes in reactive oxygen species and intracellular calcium in mouse embryos induced by TCS with confocal laser scanning microscopy in combination with the fluorescene diacetate (DCFHDA) and Fluo-3-AM. The results indicated that TCS induced increase in intracellular calcium and production of reactive oxygen species in mouse embryos , and TCS inhibited the development of mouse embryos effectively. Mouse embryos of different developmental stages before implantation are used in the experiments. This provides new insight into mechanism for abortifacient activity of TCS.

  18. A handheld laser scanning confocal reflectance imaging–confocal Raman microspectroscopy system

    PubMed Central

    Patil, Chetan A.; Arrasmith, Christopher L.; Mackanos, Mark A.; Dickensheets, David L.; Mahadevan-Jansen, Anita

    2012-01-01

    Confocal reflectance microscopy and confocal Raman spectroscopy have shown potential for non-destructive analysis of samples at micron-scale resolutions. Current studies utilizing these techniques often employ large bench-top microscopes, and are not suited for use outside of laboratory settings. We have developed a microscope which combines laser scanning confocal reflectance imaging and confocal Raman spectroscopy into a compact handheld probe that is capable of high-resolution imaging and spectroscopy in a variety of settings. The compact size of the probe is largely due to the use of a MEMS mirror for beam scanning. The probe is capable of axial resolutions of up to 4 μm for the confocal imaging channel and 10 μm for the confocal Raman spectroscopy channel. Here, we report instrument design, characterize optical performance, and provide images and spectra from normal skin to demonstrate the instrument’s capabilities for clinical diagnostics. PMID:22435097

  19. Pharmaceutical applications of confocal laser scanning microscopy: the physical characterisation of pharmaceutical systems.

    PubMed

    Pygall, Samuel R; Whetstone, Joanne; Timmins, Peter; Melia, Colin D

    2007-12-10

    The application of confocal laser scanning microscopy (CLSM) to the physicochemical characterisation of pharmaceutical systems is not as widespread as its application within the field of cell biology. However, methods have been developed to exploit the imaging capabilities of CLSM to study a wide range of pharmaceutical systems, including phase-separated polymers, colloidal systems, microspheres, pellets, tablets, film coatings, hydrophilic matrices, and chromatographic stationary phases. Additionally, methods to measure diffusion in gels, bioadhesives, and for monitoring microenvironmental pH change within dosage forms have been utilised. CLSM has also been used in the study of the physical interaction of dosage forms with biological barriers such as the eye, skin and intestinal epithelia, and in particular, to determine the effectiveness of a plethora of pharmaceutical systems to deliver drugs through these barriers. In the future, there is continuing scope for wider exploitation of existing techniques, and continuing advancements in instrumentation.

  20. Design and development of multi functional confocal laser scanning microscope with UV / VIS laser source

    NASA Astrophysics Data System (ADS)

    Kanai, Yoshikazu; Kanzaki, Yousuke; Wakaki, Moriaki; Takeyama, Norihide

    2005-08-01

    A high resolution Confocal Laser Scanning Microscope (CLSM) with UV / VIS light sources was developed as the first step of multi-functional microscope. The optical system is designed to optimize for both UV and VIS wavelengths. An UV laser is used to achieve higher resolution, and a VIS is for multi functions. A new objective lens specialized for this application was designed and fabricated. Specification of the lens and the optical system is NA:0.95, EFL:2.5mm, WD:1.5mm, Resolution:160nm and achromatic for two wavelengths of UV 325.0nm / VIS 632.8nm. Several specimens were characterized to check the performance of the system. Some optical materials under study were measured for evaluation, and interesting results could be obtained. Multi-functional measurements are being planed as a next step. This system will help the research of nano-structures, photonic-crystals and biology.

  1. Photoacoustic signal simulation and detection optimization based on laser-scanning optical-resolution photoacoustic microscopy

    NASA Astrophysics Data System (ADS)

    Li, Lin; Du, Yi; Zhao, Qingliang; Li, Qian; Chai, Xinyu; Zhou, Chuanqing

    2014-11-01

    Laser-scanning optical-resolution photoacoustic microscopy (LSOR-PAM) has a high application potential in ophthalmology and other clinical fields because of its high resolution and imaging speed. The stationary unfocused ultrasonic transducer of this system decides the efficiency and field of view (FOV) of photoacoustic signal detection, but the refraction and attenuation of laser generated photoacoustic signal in different tissue mediums will cause signal strength and direction distribution uneven. In this study, we simulated the photoacoustic signal propagation and detection in compound medium models with different tissue parameters using k-space method based on LSOR-PAM imaging principle. The results show a distance related signal strength attenuation and FOV changes related to transducer angle. Our study provides a method for photoacoustic signal detection optimization for different complex tissue structure with LSOR-PAM.

  2. Blue-laser scanned imaging system using positioning marks formed on an optical disk substrate

    NASA Astrophysics Data System (ADS)

    Shima, Takayuki; Wang, Xiaomin; Shiramizu, Hideyuki; Fujimaki, Makoto; Awazu, Koichi; Ohki, Yoshimichi

    2017-05-01

    We improved the optical disk-based imaging system to make more precise images at low cost for safety enhancement applications to observe and detect micrometer-order hazardous substances collected on a large-area surface. An optical disk substrate with positioning marks is prepared, and a signal processor is developed to automatically construct an image using the marks. We successfully obtained an image of Escherichia coli dispersed on an optical disk sample surface with a laser-scanning interval of 0.40 µm in the optical disk’s radial direction; this interval is reduced from the 0.74 and 1.36 µm intervals demonstrated in our previous papers.

  3. Fast 3D visualization of endogenous brain signals with high-sensitivity laser scanning photothermal microscopy

    PubMed Central

    Miyazaki, Jun; Iida, Tadatsune; Tanaka, Shinji; Hayashi-Takagi, Akiko; Kasai, Haruo; Okabe, Shigeo; Kobayashi, Takayoshi

    2016-01-01

    A fast, high-sensitivity photothermal microscope was developed by implementing a spatially segmented balanced detection scheme into a laser scanning microscope. We confirmed a 4.9 times improvement in signal-to-noise ratio in the spatially segmented balanced detection compared with that of conventional detection. The system demonstrated simultaneous bi-modal photothermal and confocal fluorescence imaging of transgenic mouse brain tissue with a pixel dwell time of 20 μs. The fluorescence image visualized neurons expressing yellow fluorescence proteins, while the photothermal signal detected endogenous chromophores in the mouse brain, allowing 3D visualization of the distribution of various features such as blood cells and fine structures probably due to lipids. This imaging modality was constructed using compact and cost-effective laser diodes, and will thus be widely useful in the life and medical sciences. PMID:27231615

  4. Spatiotemporal Rank Filtering Improves Image Quality Compared to Frame Averaging in 2-Photon Laser Scanning Microscopy

    PubMed Central

    Pinkard, Henry; Corbin, Kaitlin; Krummel, Matthew F.

    2016-01-01

    Live imaging of biological specimens using optical microscopy is limited by tradeoffs between spatial and temporal resolution, depth into intact samples, and phototoxicity. Two-photon laser scanning microscopy (2P-LSM), the gold standard for imaging turbid samples in vivo, has conventionally constructed images with sufficient signal-to-noise ratio (SNR) generated by sequential raster scans of the focal plane and temporal integration of the collected signals. Here, we describe spatiotemporal rank filtering, a nonlinear alternative to temporal integration, which makes more efficient use of collected photons by selectively reducing noise in 2P-LSM images during acquisition. This results in much higher SNR while preserving image edges and fine details. Practically, this allows for at least a four fold decrease in collection times, a substantial improvement for time-course imaging in biological systems. PMID:26938064

  5. Spatiotemporal Rank Filtering Improves Image Quality Compared to Frame Averaging in 2-Photon Laser Scanning Microscopy.

    PubMed

    Pinkard, Henry; Corbin, Kaitlin; Krummel, Matthew F

    2016-01-01

    Live imaging of biological specimens using optical microscopy is limited by tradeoffs between spatial and temporal resolution, depth into intact samples, and phototoxicity. Two-photon laser scanning microscopy (2P-LSM), the gold standard for imaging turbid samples in vivo, has conventionally constructed images with sufficient signal-to-noise ratio (SNR) generated by sequential raster scans of the focal plane and temporal integration of the collected signals. Here, we describe spatiotemporal rank filtering, a nonlinear alternative to temporal integration, which makes more efficient use of collected photons by selectively reducing noise in 2P-LSM images during acquisition. This results in much higher SNR while preserving image edges and fine details. Practically, this allows for at least a four fold decrease in collection times, a substantial improvement for time-course imaging in biological systems.

  6. Building Facade Documentation Using Laser Scanning and Photogrammetry and Data Implementation Into Bim

    NASA Astrophysics Data System (ADS)

    Faltýnová, M.; Matoušková, E.; Šedina, J.; Pavelka, K.

    2016-06-01

    A project started last year called MORE-CONNECT, which focuses on the renovation of buildings (especially building facades) using prefabricated elements. The aim of this project is to create a competitive solution consisting of a technology and processes which enable fast, cost-effective renovation with minimal difficulties to inhabitants. Significant cost savings in renovation costs lies in the usage of prefabricated elements and the reduction of construction works on site. The precision of the prefabricated element depends on the precision of the construction, project and building documentation. This article offers an overview of the possible methods for building documentation and spatial data transfer into BIM (Building Information Modelling) software. The description of methods focuses on laser scanning and photogrammetry (including RPAS based), its advantages, disadvantages and limitations according to the documented building, level of renovation, situation on site etc. The next part involves spatial data transfer into BIM software. A proposed solution is tested in a case study.

  7. Automated matching of multiple terrestrial laser scans for stem mapping without the use of artificial references

    NASA Astrophysics Data System (ADS)

    Liu, Jingbin; Liang, Xinlian; Hyyppä, Juha; Yu, Xiaowei; Lehtomäki, Matti; Pyörälä, Jiri; Zhu, Lingli; Wang, Yunsheng; Chen, Ruizhi

    2017-04-01

    Terrestrial laser scanning has been widely used to analyze the 3D structure of a forest in detail and to generate data at the level of a reference plot for forest inventories without destructive measurements. Multi-scan terrestrial laser scanning is more commonly applied to collect plot-level data so that all of the stems can be detected and analyzed. However, it is necessary to match the point clouds of multiple scans to yield a point cloud with automated processing. Mismatches between datasets will lead to errors during the processing of multi-scan data. Classic registration methods based on flat surfaces cannot be directly applied in forest environments; therefore, artificial reference objects have conventionally been used to assist with scan matching. The use of artificial references requires additional labor and expertise, as well as greatly increasing the cost. In this study, we present an automated processing method for plot-level stem mapping that matches multiple scans without artificial references. In contrast to previous studies, the registration method developed in this study exploits the natural geometric characteristics among a set of tree stems in a plot and combines the point clouds of multiple scans into a unified coordinate system. Integrating multiple scans improves the overall performance of stem mapping in terms of the correctness of tree detection, as well as the bias and the root-mean-square errors of forest attributes such as diameter at breast height and tree height. In addition, the automated processing method makes stem mapping more reliable and consistent among plots, reduces the costs associated with plot-based stem mapping, and enhances the efficiency.

  8. Large-field-of-view laser-scanning OR-PAM using a fibre optic sensor

    NASA Astrophysics Data System (ADS)

    Allen, T. J.; Zhang, E.; Beard, P. C.

    2015-03-01

    Laser-Scanning-Optical-Resolution Photoacoustic Microscopy (LSOR-PAM) requires an ultrasound detector with a low noise equivalent pressure (NEP) and a large angular detection aperture in order to image a large field of view (FOV). It is however challenging to meet these requirements when using piezoelectric receivers since using a small sensing element size (<100μm) in order to achieve a large angular detection aperture will inevitability reduce the sensitivity of the detector as it scales with decreasing element size. Fibre optic ultrasound sensors based on a Fabry Perot cavity do not suffer from this limitation and can provide high detection sensitivity (NEP<0.1kPa over a 20 MHz measurement bandwidth) with a large angular detection aperture due to their small active element size (~10μm). A LSOR-PAM system was developed and combined with this type of fibre optic ultrasound sensor. A set of phantom studies were undertaken. The first study demonstrated that a high resolution image over a large field of view (Ø11mm) could be obtained with a sampledetector separation of only 1.6mm. In the second study, a 12μm diameter tube filled with methylene blue whose absorption coefficient was similar to that of blood was visualised demonstrating that the fibre optic sensor could provide sufficient SNR for in-vivo microvascular OR-PAM imaging. These preliminary results suggest that the fibre optic sensor has the potential to outperform piezoelectric detectors for Laser-Scanning Optical Resolution Photoacoustic Microscopy (LSOR-PAM).

  9. Keypoint-based 4-Points Congruent Sets - Automated marker-less registration of laser scans

    NASA Astrophysics Data System (ADS)

    Theiler, Pascal Willy; Wegner, Jan Dirk; Schindler, Konrad

    2014-10-01

    We propose a method to automatically register two point clouds acquired with a terrestrial laser scanner without placing any markers in the scene. What makes this task challenging are the strongly varying point densities caused by the line-of-sight measurement principle, and the huge amount of data. The first property leads to low point densities in potential overlap areas with scans taken from different viewpoints while the latter calls for highly efficient methods in terms of runtime and memory requirements. A crucial yet largely unsolved step is the initial coarse alignment of two scans without any simplifying assumptions, that is, point clouds are given in arbitrary local coordinates and no knowledge about their relative orientation is available. Once coarse alignment has been solved, scans can easily be fine-registered with standard methods like least-squares surface or Iterative Closest Point matching. In order to drastically thin out the original point clouds while retaining characteristic features, we resort to extracting 3D keypoints. Such clouds of keypoints, which can be viewed as a sparse but nevertheless discriminative representation of the original scans, are then used as input to a very efficient matching method originally developed in computer graphics, called 4-Points Congruent Sets (4PCS) algorithm. We adapt the 4PCS matching approach to better suit the characteristics of laser scans. The resulting Keypoint-based 4-Points Congruent Sets (K-4PCS) method is extensively evaluated on challenging indoor and outdoor scans. Beyond the evaluation on real terrestrial laser scans, we also perform experiments with simulated indoor scenes, paying particular attention to the sensitivity of the approach with respect to highly symmetric scenes.

  10. Geodetic Laser Scanning: Refractive Optics Offer Wide Variety of Scan Patterns

    NASA Astrophysics Data System (ADS)

    Carter, W. E.; Shrestha, R. L.; Slatton, C. K.; Shrestha, K. Y.; Cossio, T.

    2005-12-01

    Most commercial geodetic laser mapping instruments use reflective element scanners, often a single nutating or oscillating mirror, and sometimes dual axis units, to create a specific pattern of laser spots on the surface being mapped. The user may be able to set the scanning speed (scan lines per second) and field of coverage (range of scan angles), but the basic pattern of points sampled is fixed. Engineers developing scanners for a surprisingly diverse set of applications, ranging from bar code scanning, to compensating for image motion in astronomical telescopes, to scanning spectrometers, have increasingly turned to refractive scanners-most particularly to scanners that utilize "Risley prisms." Samuel Doty Risley (1845-1920), an ophthalmologist, invented an optometer that contained a pair of thin prisms that rotated in opposite directions about their optical axes to change the convergence of light rays from a single source. He used his optometer measure the visual acuity of patients eyes, as a function of distance. In this original application, both prisms were driven by a common gear assembly, which resulted in a nearly linear scan line. But if the prisms are driven independently in both direction and angular speed, a wide variety of scan patterns can be generated. The University of Florida is developing, a photon counting geodetic laser scanning instrument that will use a Risley prism scanner. The scanner, being built by Sigma Space Inc., will be capable of producing nearly linear scan lines (saw tooth pattern from moving platform), circular scans lines (helical pattern from a moving platform) and any number of rosette scan patterns that are particularly interesting for fixed ground based work. The flexibility provided by the scanner offers the possibility of using the same sensor for airborne and ground based geodetic laser scanning. Examples of the scanner patterns and the initial results from laboratory and early field tests will be presented.

  11. Robust Locally Weighted Regression For Ground Surface Extraction In Mobile Laser Scanning 3D Data

    NASA Astrophysics Data System (ADS)

    Nurunnabi, A.; West, G.; Belton, D.

    2013-10-01

    A new robust way for ground surface extraction from mobile laser scanning 3D point cloud data is proposed in this paper. Fitting polynomials along 2D/3D points is one of the well-known methods for filtering ground points, but it is evident that unorganized point clouds consist of multiple complex structures by nature so it is not suitable for fitting a parametric global model. The aim of this research is to develop and implement an algorithm to classify ground and non-ground points based on statistically robust locally weighted regression which fits a regression surface (line in 2D) by fitting without any predefined global functional relation among the variables of interest. Afterwards, the z (elevation)-values are robustly down weighted based on the residuals for the fitted points. The new set of down weighted z-values along with x (or y) values are used to get a new fit of the (lower) surface (line). The process of fitting and down-weighting continues until the difference between two consecutive fits is insignificant. Then the final fit represents the ground level of the given point cloud and the ground surface points can be extracted. The performance of the new method has been demonstrated through vehicle based mobile laser scanning 3D point cloud data from urban areas which include different problematic objects such as short walls, large buildings, electric poles, sign posts and cars. The method has potential in areas like building/construction footprint determination, 3D city modelling, corridor mapping and asset management.

  12. Feature-Based Laser Scan Matching and Its Application for Indoor Mapping

    PubMed Central

    Li, Jiayuan; Zhong, Ruofei; Hu, Qingwu; Ai, Mingyao

    2016-01-01

    Scan matching, an approach to recover the relative position and orientation of two laser scans, is a very important technique for indoor positioning and indoor modeling. The iterative closest point (ICP) algorithm and its variants are the most well-known techniques for such a problem. However, ICP algorithms rely highly on the initial guess of the relative transformation, which will reduce its power for practical applications. In this paper, an initial-free 2D laser scan matching method based on point and line features is proposed. We carefully design a framework for the detection of point and line feature correspondences. First, distinct feature points are detected based on an extended 1D SIFT, and line features are extracted via a modified Split-and-Merge algorithm. In this stage, we also give an effective strategy for discarding unreliable features. The point and line features are then described by a distance histogram; the pairs achieving best matching scores are accepted as potential correct correspondences. The histogram cluster technique is adapted to filter outliers and provide an accurate initial value of the rigid transformation. We also proposed a new relative pose estimation method that is robust to outliers. We use the lq-norm (0 < q < 1) metric in this approach, in contrast to classic optimization methods whose cost function is based on the l2-norm of residuals. Extensive experiments on real data demonstrate that the proposed method is almost as accurate as ICPs and is initial free. We also show that our scan matching method can be integrated into a simultaneous localization and mapping (SLAM) system for indoor mapping. PMID:27517932

  13. Fluorescence liftime imaging (FLIM) using ps-pulsed diode lasers in laser scanning microscopes

    NASA Astrophysics Data System (ADS)

    Ruck, Angelika C.; Dolp, Frank; Happ, Claudia; Steiner, Rudolf; Beil, Michael

    2003-06-01

    A setup consisting on a laser scanning microscope equipped with appropriate detection units was developed for time-resolved intracellular fluorescence spectroscopy and fluorescence lifetime imaging (FLIM) for on-line detection of structural changes of various biomolecules. Short-pulsed excitation was performed with a diode laser which emits pulses at 398 nm with 70 ps duration. The laser was coupled to the laser scanning microscope. For time resolved spectroscopy a setup consisting of an Czerny Turner spectrometer and a MCP-gated and -intensified CCD camera was used. Time-gated spectra within the cells were acquired by placing the laser beam in "spot scan" mode. In addition, a time-correlated single photon counting module was used to determine the fluorescence lifetime from single spots and to record lifetime images (τ-mapping). The time-resolved fluorescence characteristics of 5-ALA (5-aminolevulinic-acid), as well as 5-ALAhe (5-aminolevulinic-acid-hexylester)- induced protoporphyrine IX (PPIX) were investigated before and during PDT with subcellular resolution. For cells which were incubated with 5-ALA, a component with a fluorescence lifetime of about 7 ns was correlated with a structured fluorescence, which probably coincides with mitochondria, whereas a shorter lifetime was found in the cytoplasm. In the case of 5-ALAhe the lifetime of PPIX was longer, which could be due to different localization. During PDT the component with the longer lifetime completely vanished, whereas the shorter liftime was retained. It seems that FLIM is a valuable method to selectively identify and localize the photodynamically active photosensitizer.

  14. Street-side vehicle detection, classification and change detection using mobile laser scanning data

    NASA Astrophysics Data System (ADS)

    Xiao, Wen; Vallet, Bruno; Schindler, Konrad; Paparoditis, Nicolas

    2016-04-01

    Statistics on street-side car parks, e.g. occupancy rates, parked vehicle types, parking durations, are of great importance for urban planning and policy making. Related studies, e.g. vehicle detection and classification, mostly focus on static images or video. Whereas mobile laser scanning (MLS) systems are increasingly utilized for urban street environment perception due to their direct 3D information acquisition, high accuracy and movability. In this paper, we design a complete system for car park monitoring, including vehicle recognition, localization, classification and change detection, from laser scanning point clouds. The experimental data are acquired by an MLS system using high frequency laser scanner which scans the streets vertically along the system's moving trajectory. The point clouds are firstly classified as ground, building façade, and street objects which are then segmented using state-of-the-art methods. Each segment is treated as an object hypothesis, and its geometric features are extracted. Moreover, a deformable vehicle model is fitted to each object. By fitting an explicit model to the vehicle points, detailed information, such as precise position and orientation, can be obtained. The model parameters are also treated as vehicle features. Together with the geometric features, they are applied to a supervised learning procedure for vehicle or non-vehicle recognition. The classes of detected vehicles are also investigated. Whether vehicles have changed across two datasets acquired at different times is detected to estimate the durations. Here, vehicles are trained pair-wisely. Two same or different vehicles are paired up as training samples. As a result, the vehicle recognition, classification and change detection accuracies are 95.9%, 86.0% and 98.7%, respectively. Vehicle modelling improves not only the recognition rate, but also the localization precision compared to bounding boxes.

  15. CD87-positive tumor cells in bone marrow aspirates identified by confocal laser scanning fluorescence microscopy.

    PubMed

    Noack, F; Helmecke, D; Rosenberg, R; Thorban, S; Nekarda, H; Fink, U; Lewald, J; Stich, M; Schutze, K; Harbeck, N; Magdolen, V; Graeff, H; Schmitt, M

    1999-10-01

    Dissemination of single tumor cells to the bone marrow is a common event in cancer. The clinical significance of cytokeratin-positive cells detected in the bone marrow of cancer patients is still a matter of debate. In gastric cancer, overexpression of the receptor (uPAR or CD87) for the serine protease urokinase-type plasminogen activator (uPA) in disseminated cancer cells indicates shorter survival of cancer patients. A new immunofluorescence approach, applying confocal laser scanning microscopy, is introduced to locate CD87 antigen in cytokeratin-positive tumor cells and to quantify the CD87 antigen by consecutive scanning. At first, cytokeratin 8/18/19-positive carcinoma cells are identified at excitation wavelength 488 nm using monoclonal antibody A45B/B3 to the cytokeratins and goat anti-mouse IgG labeled with the fluorochrome Alexa488. Next, CD87 in tumor cells is identified by chicken antibody HU277 to the uPA-receptor and goat anti-chicken IgY labeled with fluorochrome Alexa568 (excitation wavelength 568 nm) and the fluorescence signal quantified on a single cell basis using fluorescently labeled latex beads as the fluorescence reference. From 16 patients with gastric or esophageal carcinoma, bone marrow aspirates were obtained, stained for cytokeratins and CD87 and then subjected to laser scanning fluorescence microscopy. Three of six gastric cancer patients had tumor cells present in the bone marrow of which 2 stained for CD87. Three of ten esophageal carcinoma patients had tumor cells in the bone marrow, all three samples stained for CD87. CD87-positive tumor cells were also dissected from stained bone marrow aspirates by laser microdissection microscope to allow analysis of single cells at the gene level.

  16. Automatic Feature Detection, Description and Matching from Mobile Laser Scanning Data and Aerial Imagery

    NASA Astrophysics Data System (ADS)

    Hussnain, Zille; Oude Elberink, Sander; Vosselman, George

    2016-06-01

    In mobile laser scanning systems, the platform's position is measured by GNSS and IMU, which is often not reliable in urban areas. Consequently, derived Mobile Laser Scanning Point Cloud (MLSPC) lacks expected positioning reliability and accuracy. Many of the current solutions are either semi-automatic or unable to achieve pixel level accuracy. We propose an automatic feature extraction method which involves utilizing corresponding aerial images as a reference data set. The proposed method comprise three steps; image feature detection, description and matching between corresponding patches of nadir aerial and MLSPC ortho images. In the data pre-processing step the MLSPC is patch-wise cropped and converted to ortho images. Furthermore, each aerial image patch covering the area of the corresponding MLSPC patch is also cropped from the aerial image. For feature detection, we implemented an adaptive variant of Harris-operator to automatically detect corner feature points on the vertices of road markings. In feature description phase, we used the LATCH binary descriptor, which is robust to data from different sensors. For descriptor matching, we developed an outlier filtering technique, which exploits the arrangements of relative Euclidean-distances and angles between corresponding sets of feature points. We found that the positioning accuracy of the computed correspondence has achieved the pixel level accuracy, where the image resolution is 12cm. Furthermore, the developed approach is reliable when enough road markings are available in the data sets. We conclude that, in urban areas, the developed approach can reliably extract features necessary to improve the MLSPC accuracy to pixel level.

  17. Augmenting comprehension of geological relationships by integrating 3D laser scanned hand samples within a GIS environment

    NASA Astrophysics Data System (ADS)

    Harvey, A. S.; Fotopoulos, G.; Hall, B.; Amolins, K.

    2017-06-01

    Geological observations can be made on multiple scales, including micro- (e.g. thin section), meso- (e.g. hand-sized to outcrop) and macro- (e.g. outcrop and larger) scales. Types of meso-scale samples include, but are not limited to, rocks (including drill cores), minerals, and fossils. The spatial relationship among samples paired with physical (e.g. granulometric composition, density, roughness) and chemical (e.g. mineralogical and isotopic composition) properties can aid in interpreting geological settings, such as paleo-environmental and formational conditions as well as geomorphological history. Field samples are collected along traverses in the area of interest based on characteristic representativeness of a region, predetermined rate of sampling, and/or uniqueness. The location of a sample can provide relative context in seeking out additional key samples. Beyond labelling and recording of geospatial coordinates for samples, further analysis of physical and chemical properties may be conducted in the field and laboratory. The main motivation for this paper is to present a workflow for the digital preservation of samples (via 3D laser scanning) paired with the development of cyber infrastructure, which offers geoscientists and engineers the opportunity to access an increasingly diverse worldwide collection of digital Earth materials. This paper describes a Web-based graphical user interface developed using Web AppBuilder for ArcGIS for digitized meso-scale 3D scans of geological samples to be viewed alongside the macro-scale environment. Over 100 samples of virtual rocks, minerals and fossils populate the developed geological database and are linked explicitly with their associated attributes, characteristic properties, and location. Applications of this new Web-based geological visualization paradigm in the geosciences demonstrate the utility of such a tool in an age of increasing global data sharing.

  18. Adhesion of rice flour-based batter to chicken drumsticks evaluated by laser scanning confocal microscopy and texture analysis.

    PubMed

    Mukprasirt, A; Herald, T J; Boyle, D L; Rausch, K D

    2000-09-01

    The convenience and appeal of battered or breaded products have resulted in a sales increase of 100% since 1980. Because of the rapid growth of the Asian-American population and increasing consumption of rice and rice products, rice flour is a logical alternative for wheat flour in traditional batter formulation. The effects of ingredients used in rice flour-based batters on adhesion characteristic for deep-fat fried chicken drumsticks were studied by laser scanning confocal microscopy (LSCM) and texture analysis. Raw chicken drumsticks were predusted with egg albumin powder before dipping into batters prepared from combinations of rice flour, yellow corn flour, oxidized cornstarch, methylcellulose, or xanthan gum. The drumsticks were fried at 175+/-5 C until the internal temperature reached at least 71 C. For LSCM, samples were fixed overnight and were sectioned by vibratome (200 microm) before viewing. Batter adhesion was determined using an attachment specifically designed for chicken drumsticks. Microstructural analysis showed that batter formulated with a 50:50 mixture of rice and corn flours adhered better to drumsticks than batter with other rice flour ratios. Xanthan gum (0.2%) or methylcellulose (0.3%) alone had poor adhesion to chicken skin. However, when combined with other ingredients, xanthan gum increased the amount of batter pick-up before frying by increasing viscosity. Egg albumin significantly facilitated batter adhesion. The results from texture analysis supported the microstructural studies. As rice flour ratio increased from 50 to 70%, the binding force decreased. Rice flour showed potential as an alternative to wheat flour for batter formulas when the appropriate levels of oxidized starch, xanthan gum, and methylcellulose were included in the formulation.

  19. Terrestrial laser scanning and pin meter measurements for erosion and roughness assessment in boreal peatland forest ditches

    NASA Astrophysics Data System (ADS)

    Stenberg, Leena; Tuukkanen, Tapio; Finér, Leena; Marttila, Hannu; Piirainen, Sirpa; Kløve, Bjørn; Koivusalo, Harri

    2016-04-01

    Drainage and the maintenance of drainage ditches in peatland forests increase erosion and sediment load reducing water quality downstream. The understanding of the sediment source area processes requires reliable methods for topographical change detection in the peatland forest ditches. The objective of this study was to quantify erosion and changes in surface roughness with two different methods: terrestrial laser scanning (TLS) and manual pin meter measurements. Two newly cleaned boreal peatland forest ditches were studied, one peat ditch and one with exposed till soil under the thin peat layer. The topographies of a 4-meter-long section of the ditches were measured sequentially during the 11-20 months study period. In the ditch with thin peat layer, erosion estimates were quite similar with both methods. However, in the peat ditch the erosion measured with the pin meter considerably exceeded the results provided by TLS. Surface roughness indicated by the TLS data was greater than the surface roughness calculated from the pin meter data. According to both methods, surface roughness increased more at the ditch with thin peat layer. Both methods could be adopted to measure erosion and surface roughness in peatland forest conditions. However, the methods had difficulties to distinguish the bed of the peat ditch. TLS encountered problems to detect dark peat soil bed under shallow layer of humic ditch water resulting in no-data areas at the bed of the ditch. Pin meter device was able to measure under the water but the soft peat bed increased the uncertainty of the measurements.

  20. Penetrability of AH plus and MTA fillapex after endodontic treatment and retreatment: a confocal laser scanning microscopy study.

    PubMed

    Kok, Daniela; Rosa, Ricardo Abreu da; Barreto, Mirela Sangoi; Busanello, Fernanda Hoffmann; Santini, Manuela Favarin; Pereira, Jefferson Ricardo; Só, Marcus Vinícius Reis

    2014-06-01

    The aim of the study was to assess the penetrability of two endodontic sealers (AH Plus and MTA Fillapex) into dentinal tubules, submitted to endodontic treatment and subsequently to endodontic retreatment. Thirty ex vivo incisors were prepared using ProTaper rotary system up to F3 instrument and divided in three groups according to the endodontic sealer used for root canal filling: AH Plus (AHP), MTA Fillapex (MTAF), and control group (CG) without using EDTA previously to the root canal filling. Rhodamine B dye (red) was incorporated to the sealers in order to provide the fluorescence which will enable confocal laser scanning microscopy (CLSM) assessment. All specimens were filled with gutta-percha cones using the lateral compaction technique. The specimens were submitted to endodontic retreatment using ProTaper Retreatment system, re-prepared up to F5 instruments and filled with gutta-percha cones and the same sealer used during endodontic retreatment. Fluorescein dye (green) was incorporated to the sealer in order to distinguish from the first filling. The roots were sectioned 2 mm from the apex and assessed by CLSM. No difference was found between the two experimental groups (P > 0.05). On the other hand, in the control group the sealers were not capable to penetrate into dentinal tubules after endodontic treatment (P > 0.05). In retreatment cases, none of the sealers were able to penetrate into dentin tubules. It can be concluded that sealer penetrability is high during endodontic treatment. However, MTA Fillapex and AH Plus do not penetrate into dentinal tubules after endodontic retreatment. © 2014 Wiley Periodicals, Inc.

  1. Application of a plasma-jet for skin antisepsis: analysis of the thermal action of the plasma by laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Lademann, O.; Richter, H.; Patzelt, A.; Alborova, A.; Humme, D.; Weltmann, K.-D.; Hartmann, B.; Hinz, P.; Kramer, A.; Koch, S.

    2010-06-01

    Recently, it was reported that a plasma-jet could be efficiently applied for the antisepsis of wounds. In this case, the discharge in an argon gas stream was used to produce a so-called ``cold plasma'' on the skin surface. The thermal action of the plasma on the skin was investigated in the present study by means of laser scanning microscopy (LSM) and by histological analysis. Consequently, the plasma beam was moved with a definite velocity at an optimal distance over the skin surface. The structural changes of the tissue were analyzed. It was found by LSM that a thermal damage could be detected only in the upper cell layers of the stratum corneum (SC) at moving velocities of the plasma beam, usually applied in clinical practice. Deeper parts of the SC were not damaged. The structural changes were so superficial that they could be detected only by LSM but not by analysis of the histological sections.

  2. Shape analysis of giant vesicles with fluid phase coexistence by laser scanning microscopy to determine curvature, bending elasticity, and line tension.

    PubMed

    Hess, Samuel T; Gudheti, Manasa V; Mlodzianoski, Michael; Baumgart, Tobias

    2007-01-01

    Membrane shape parameters such as curvature, bending elasticity, and lateral tension, are relevant to the lateral organization and function of biomembranes, and may critically influence the formation of lateral clustering patterns observed in living cells. Fluorescence laser-scanning microscopy can be used to image vesicles and cell membranes, and from shape analysis of these images mechanical membrane parameters can be quantified. Methods to analyze images of equatorial sections obtained by confocal or multiphoton microscopy are detailed, in order to estimate curvature, lateral tension, line tension, relative differences in mean curvature and Gaussian curvature bending moduli, and fluorescence dye intensity profiles, typically within coexisting liquid-ordered and liquid-disordered membrane domains. A variety of shape tracing and shape fitting methods are compared.

  3. Correcting spherical aberrations in a biospecimen using a transmissive liquid crystal device in two-photon excitation laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Tanabe, Ayano; Hibi, Terumasa; Ipponjima, Sari; Matsumoto, Kenji; Yokoyama, Masafumi; Kurihara, Makoto; Hashimoto, Nobuyuki; Nemoto, Tomomi

    2015-10-01

    Two-photon excitation laser scanning microscopy has enabled the visualization of deep regions in a biospecimen. However, refractive-index mismatches in the optical path cause spherical aberrations that degrade spatial resolution and the fluorescence signal, especially during observation at deeper regions. Recently, we developed transmissive liquid-crystal devices for correcting spherical aberration without changing the basic design of the optical path in a conventional laser scanning microscope. In this study, the device was inserted in front of the objective lens and supplied with the appropriate voltage according to the observation depth. First, we evaluated the device by observing fluorescent beads in single- and two-photon excitation laser scanning microscopes. Using a 25× water-immersion objective lens with a numerical aperture of 1.1 and a sample with a refractive index of 1.38, the device recovered the spatial resolution and the fluorescence signal degraded within a depth of ±0.6 mm. Finally, we implemented the device for observation of a mouse brain slice in a two-photon excitation laser scanning microscope. An optical clearing reagent with a refractive index of 1.42 rendered the fixed mouse brain transparent. The device improved the spatial resolution and the yellow fluorescent protein signal within a depth of 0-0.54 mm.

  4. Documentation and Visualization of AN As-Built Tunnel by Combining 3d Laser Scanning and Web Mapping

    NASA Astrophysics Data System (ADS)

    Zhang, C.; Arditi, D.; Chen, Z.

    2013-08-01

    A new way to document and visualize the as-built condition of an urban tunnel project with high accuracy is described in this paper, based on recent developments of laser scanning technology. In traditional surveying, the components of a tunnel are organized on the basis of the location of stations and offsets along the project alignment specified in the drawings. It is difficult for people without an engineering background to understand the information involved in surveying reports, drawings, and engineering data. However, in the interest of transparency, public agencies that commission construction projects have to make project information available to government officials and to the general public. This paper discusses the combined use of laser scanning technology and web mapping services to improve the documentation and visualization of an urban metro tunnel. Laser scanning technology is introduced to perform the surveyor's task, document the as-built condition, and geo-reference the construction elements. A set of panoramic pictures is generated by laser scanning that allows for taking measurements and extracting 3D coordinates. An XML file that contains geo-reference information is appended to each panoramic picture. Using application programming interface (API), this information is referenced to a web mapping service. A case study of the CTA Red line Tunnel in Chicago, IL demonstrates this method in a real life project.

  5. USE OF MULTIPHOTON LASER SCANNING MICROSCOPY TO IMAGE BENZO[A]PYRENE AND METABOLITES IN FISH EARLY LIFE STAGES

    EPA Science Inventory

    Multiphoton laser scanning micrsocopy holds promise as a tool to study the tissue distribution of environmental chemical contaminants during fish early life stage development. One such chemical for which this is possible is benzo[a]pyrene (BaP), a polyaromatic hydrocarbon that a...

  6. The illuminating role of laser scanning digital elevation models in precision agriculture experimental designs - an agro-ecology perspective

    USDA-ARS?s Scientific Manuscript database

    Laser scanning data streams, when linked with multi-spectral, hyperspectral, apparent soil electro-conductivity (ECa), or other kinds of geo-referenced data streams, aid in the creation of maps that allow useful applications in agricultural systems. These combinations of georeferenced information p...

  7. Estimating individual tree mid- and understory rank-size distributions from airborne laser scanning in semi-arid forests

    Treesearch

    Tyson L. Swetnam; Donald A. Falk; Ann M. Lynch; Stephen R. Yool

    2014-01-01

    Limitations inherent to airborne laser scanning (ALS) technology and the complex sorting and packing relationships of forests complicate accurate remote sensing of mid- and understory trees, especially in denser forest stands. Self-similarities in rank-sized individual tree distributions (ITD), e.g. bole diameter or height, are a well-understood property of natural,...

  8. USE OF MULTIPHOTON LASER SCANNING MICROSCOPY TO IMAGE BENZO[A]PYRENE AND METABOLITES IN FISH EARLY LIFE STAGES

    EPA Science Inventory

    Multiphoton laser scanning micrsocopy holds promise as a tool to study the tissue distribution of environmental chemical contaminants during fish early life stage development. One such chemical for which this is possible is benzo[a]pyrene (BaP), a polyaromatic hydrocarbon that a...

  9. USE OF MULTIPHOTON LASER SCANNING MICROSCOPY TO IMAGE BENZO[A]PYRENE AND METABOLITES IN FISH EGGS

    EPA Science Inventory

    Multiphoton laser scanning microscopy (MPLSM) is a promising tool to study the tissue distribution of environmental chemical contaminants during fish early life stages. One such chemical for which this is possible is benzo[a]pyrene (BaP), a polycyclic aromatic hydrocarbon that a...

  10. Accuracy in estimation of timber assortments and stem distribution - A comparison of airborne and terrestrial laser scanning techniques

    NASA Astrophysics Data System (ADS)

    Kankare, Ville; Vauhkonen, Jari; Tanhuanpää, Topi; Holopainen, Markus; Vastaranta, Mikko; Joensuu, Marianna; Krooks, Anssi; Hyyppä, Juha; Hyyppä, Hannu; Alho, Petteri; Viitala, Risto

    2014-11-01

    Detailed information about timber assortments and diameter distributions is required in forest management. Forest owners can make better decisions concerning the timing of timber sales and forest companies can utilize more detailed information to optimize their wood supply chain from forest to factory. The objective here was to compare the accuracies of high-density laser scanning techniques for the estimation of tree-level diameter distribution and timber assortments. We also introduce a method that utilizes a combination of airborne and terrestrial laser scanning in timber assortment estimation. The study was conducted in Evo, Finland. Harvester measurements were used as a reference for 144 trees within a single clear-cut stand. The results showed that accurate tree-level timber assortments and diameter distributions can be obtained, using terrestrial laser scanning (TLS) or a combination of TLS and airborne laser scanning (ALS). Saw log volumes were estimated with higher accuracy than pulpwood volumes. The saw log volumes were estimated with relative root-mean-squared errors of 17.5% and 16.8% with TLS and a combination of TLS and ALS, respectively. The respective accuracies for pulpwood were 60.1% and 59.3%. The differences in the bucking method used also caused some large errors. In addition, tree quality factors highly affected the bucking accuracy, especially with pulpwood volume.

  11. Development of variable-rate sprayer with laser scanning sensor to synchronize spray outputs to tree structures

    USDA-ARS?s Scientific Manuscript database

    Efficient and effective precision spray equipment and strategies have been constantly demanded to reduce pesticide use in tree crop productions. An experimental variable-rate air-assisted sprayer implemented with a high-speed laser scanning sensor was developed to control the spray output of individ...

  12. USE OF MULTIPHOTON LASER SCANNING MICROSCOPY TO IMAGE BENZO[A]PYRENE AND METABOLITES IN FISH EGGS

    EPA Science Inventory

    Multiphoton laser scanning microscopy (MPLSM) is a promising tool to study the tissue distribution of environmental chemical contaminants during fish early life stages. One such chemical for which this is possible is benzo[a]pyrene (BaP), a polycyclic aromatic hydrocarbon that a...

  13. Three-Dimensional Mapping of AN Ancient Cave Paintings Using Close-Range Photogrammetry and Terrestrial Laser Scanning Technologies

    NASA Astrophysics Data System (ADS)

    Majid, Z.; Ariff, M. F. M.; Idris, K. M.; Yusoff, A. R.; Idris, K. M.; Aspuri, A.; Abbas, M. A.; Zainuddin, K.; Ghani, A. R. A.; Saeman, A. A. Bin

    2017-02-01

    The paper describes the used of close-range photogrammetry and terrestrial laser scanning technologies as an innovative technology for acquiring the three-dimensional data of an ancient cave paintings. The close-range photogrammetry technology used in the research was divided in two categories which are the UAV-based close-range photogrammetry and the terrestrialbased close-range photogrammetry. The UAV-based technology involved with the used of calibrated Phantom 4 System while the terrestrial-based technology involved with the calibrated Sony F828 digital camera and pPhotoModeler software. Both stereo and convergent image acquisition techniques were used to acquire the images of the paintings. The ancient cave paintings were also recorded using terrestrial laser scanning technology. In the research, the FARO Focus 3D terrestrial laser scanner was used to capture the three-dimensional point clouds and images of the paintings. The finding shows that both close-range photogrammetry and laser scanning technologies provide excellent solutions to map and to record the ancient paintings. As compared to the conventional method, both close-range photogrammetry and terrestrial laser scanning technology provide a noncontact solution for data acquisition and the data was recorded in digital format for better protection and security.

  14. Gully Morphological Characteristics in the Loess Hilly-gully Region Based on 3D Laser Scanning Technique

    NASA Astrophysics Data System (ADS)

    Zheng, Fenli

    2017-04-01

    Gully erosion plays an important role on sediment production in the Loess Hilly-gully Region. Gully morphology is strongly affected by gully erosion process and can be well used to describe gully developmental condition. The Chabagou watershed, located at hilly-gully region of the Loess Plateau, was selected to investigate gully morphological characteristics using 3D laser scanning technique (LIDAR). Thirty-one representative gullies at active stage, including different watershed locations and gully orders, were chosen to quantitatively describe gully morphology and establish empirical equations for estimating gully volume based on gully length and gully surface area. Images and point clouds datum of 31 gullies were collected and digital elevation models (DEMs) with 10 cm resolution were generated; then gully fundamental morphological characteristics covering gully length (L), gully width (WT) and gully depth (D) and some derivative morphological indicators including gully head curvature (C), gully width depth ratio (w/d), gully bottom to top width ratio (WB/WT), gully surface area (Ag) and gully volume (V g) were extracted by ArcGIS 10.1. The results showed that gully length decreased gradually from upstream to downstream in the study watershed and gully depth was greater in the downstream of watershed. Differentiation method of gully head and gully sidewalls was proposed with a mean relative error of 8.77%. Gullies in the upstream and the 2nd order were more developmental for their high values of gully head curvature. Gullies had more developmental potential from the 2nd order to the 4th order. Within the same gully orders, gullies in the downstream of watershed were more active. U-shaped cross-sections were widely distributed in the upstream of watershed and upper position of a gully; while V-shaped cross-sections were widely distributed in the downstream of watershed and lower position of a gully. Gully cross-section shapes at gully scale and watershed scale

  15. Measuring peatland morphology and eco-hydrological condition with laser scanning and spatial statistics

    NASA Astrophysics Data System (ADS)

    Bennie, J. J.; Anderson, K.

    2008-12-01

    with the biological survey, a ground-based high definition laser scanning instrument was used to measure the structural patterns in the bog microtopography. The spatial resolution of the laser scanning data was 2 cm at a distance of 20 m. Geostatistical variogram analysis was applied to the laser scanning data, for modelling the spatial character of each site. Results demonstrate that bog surfaces of different hydrological status show different scales of spatial pattern (semivariogram ranges typically < 1 m for active raised bog with characteristic Sphagnum hummock/hollow topography, ~ 4 m for drained and degraded bog dominated by a dwarf shrub canopy). At larger scales variation in the peat/vegetation surface level is associated with lowering of the water table. More recent work has shown the upscaling potential of this technique, where similar spatial statistical indicators have been measured using airborne LiDAR with a horizontal resolution of around 0.8 points per metre, allowing the application of this technique over the entire hydrological unit. Preliminary analysis at this suggests that a simple measure of semivariance at a lag distance of 5 m is sufficient to distinguish between areas of intact bog and drained and degraded bog (p < 0.05). These methods show promising potential for the large-scale monitoring and mapping of surface pattern as an indicator of hydrological and ecological status in peatlands.

  16. Terrestrial Laser Scanning of Peatland Surface Morphology for Eco-Hydrological Applications

    NASA Astrophysics Data System (ADS)

    Anderson, Karen; Bennie, Jonathan; Wetherelt, Andrew

    2010-05-01

    BACKGROUND: Ombrotrophic (rain-fed) lowland raised bogs are scarce habitats with high conservation importance in Europe. A reproducible measurement technique which is capable of capturing the spatial patterning of vegetation and surface topography is important in peatlands because structure is linked to ecological function, hydrology, biodiversity and carbon sequestration. Little attention has been given in the literature to the potential capabilities of active remote sensing systems such as LiDAR for monitoring peatland status, despite the clear opportunity posed by adopting a structurally-focused approach. APPROACH: The research described in this paper set out to establish the information content of laser scanning data for peatland condition monitoring. Our approach was to use fine scale laser scan data acquired from a terrestrial laser scanner (TLS) so as to understand the data requirements for these types of application. We adopted a transect approach to sampling at the Wedholme Flow peatland site in Cumbria, UK. This is a lowland ombrotrophic peatland exhibiting a range of eco-hydrological condition types and was thus a suitable test-bed for the methodology. Seven sites located along a hydrological gradient were measured using TLS. A Leica HDS 3000 instrument, mounted on a tracked vehicle was used to survey the peatland surface from three viewpoints at each site, meaning that shadows cast by the plant canopy were in-filled during post-processing of the point cloud. Each site was also instrumented with hydrological dipwell recorders and assessed using detailed ecological surveys. Positional data from a differential GPS survey (collected simultaneously) were used to elucidate interpretation of spatial patterns in the TLS data. RESULTS: The results demonstrate the capabilities of TLS for describing peatland microtopography and vegetation canopy characteristics at a fine spatial scale (cm resolution over 10 m spatial extent). Geostatistical analyses of the laser

  17. Airborne Laser Scanning as an effective tool for disaster mapping over mountainous forested landscapes

    NASA Astrophysics Data System (ADS)

    Azahari Razak, Khamarrul; van Westen, Cees; Straatsma, Menno; Malet, Jean-Philippe; de Jong, Steven M.

    2010-05-01

    The emergence of airborne laser scanning (ALS), initially as a research tool and in the last decade as a commercial capability has provided a powerful means to characterize the natural features and man-made structures within mountainous forested landscapes. ALS is capable of delivering very dense point clouds of a landscape in a relatively short time. Furthermore, ALS is able to operate during the night and highly accurate because of laser ranging accuracy and precise sensor platform supported by an integrated position and orientation system. The capability of ALS to obtain both ground and non-ground points leads to produce a high-quality digital terrain model and to retrieve detailed information from non-ground points (e.g. vegetation, building). Rapid mapping over spatial scales is one of the essential aspects for emergency response in dealing with hazard and risk assessment in mountainous environment. To date, many national agencies, private industries and research institutes utilize products derived from ALS data for disaster management. In order for the data to be effectively use by the end-users or decision-makers, a number of consideration at pre, during and post ALS data acquisition stages are required. This paper provides recommendations at planning stages, measurement phases, point cloud processing and products derivation throughout ALS data acquisition over rugged forested terrain based on Bois Noir catchment dataset in Barcelonnette, France. This catchment is highly affected by landslide hazards and located within climatic, lithological and geomorphological condition of the Southern French Alps. Airborne laser scanning data over the 100-years old forest in Bois Noir catchment was captured in July 2009 using a RIEGL laser scanner mounted on a helicopter. Airborne laser scanning differs in terms of typical project size, measurement techniques, scanning mechanism, positional accuracy and resolution of derived-products. Selection of laser sensor, number of

  18. Roughness of biopores and cracks in Bt-horizons by confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Leue, Martin; Gerke, Horst H.

    2016-04-01

    During preferential flow events in structured soils, the movement of water and reactive solutes is mostly restricted to larger inter-aggregate pores, cracks, and biopores. The micro-topography of such macropores in terms of pore shapes, geometry, and roughness is crucial for describing the exchange of water and solutes between macropores and the soil matrix. The objective of this study was to determine the surface roughness of intact structural surfaces from the Bt-horizon of Luvisols by confocal laser scanning microscopy. For this purpose, samples with the structural surface types including cracks with and without clay-organic coatings from Bt-horizons developed on loess and glacial till were compared. The surface roughness of these structures was calculated in terms of three parameters from selected surface regions of 0.36 mm² determined with a confocal laser scanning microscope of the type Keyence VK-X100K. These data were evaluated in terms of the root-mean-squared roughness, Rq, the curvature, Rku, and the ratio between surface area and base area, RA. Values of Rq and RA were smaller for coated as compared to uncoated cracks and earthworm burrows of the Bt-horizons from both parent materials. The results indicated that the illuviation of clayey material led to a "smoothing" of the crack surfaces, which was similar for the coarser textured till-Bt and the finer-textured loess-Bt surfaces. The roughness indicated by Rq and RA values was only slightly smaller and that indicated by Rku slightly higher for the structural surfaces from the loess as compared to those from the glacial till. These results suggest a minor importance of the parent material on the roughness of structural surfaces in the Bt-horizon. The similarity of Rq, RA, and Rku values between surfaces of earthworm burrows and uncoated cracks did not confirm an expected smoothing effect of the burrow walls by the earthworm. In contrast to burrow walls, root channels from the loess-Bt were smoother

  19. Evaluating through-water terrestrial laser scanning under a range of flow and suspended sediment conditions

    NASA Astrophysics Data System (ADS)

    Smith, M.; Vericat, D.

    2012-04-01

    The fine scale structure of the water-sediment boundary in fluvial environments is dynamic and complex, influencing near-bed flows, sediment transport and instream ecology. Recent advances in surveying technology have enabled the acquisition of high-resolution topographic datasets for both exposed and deeply submerged surfaces using terrestrial and bathymetric LiDAR respectively. However, there remains the challenge of accurately surveying marginally- or partially- inundated areas of river channels. Preliminary tests confirm that terrestrial laser scanning (TLS) can be performed through relatively shallow water columns, obtaining three-dimensional submerged topography at a millimetre resolution. With correction for laser refraction at the water surface and estimation of the actual point of laser emission, scanning through water using a standard green-wavelength time-of-flight terrestrial laser scanner has been shown to introduce additional errors of less than 5 mm with no effect on point precision. For partially-submerged surfaces, the sub-aerial and submerged components can be united seamlessly within a single three dimensional topographic model. However, to date, this method has only been evaluated under ideal conditions of a static, relatively shallow and clear water column. This paper evaluates through-water TLS under variable flow and suspended sediment conditions to establish the additional error introduced. In a laboratory setting, submerged topography was acquired under variable water flow, colour and suspended sediment conditions. Decreased precision was observed with increased flow rates, while the effect of suspended sediment in the water column decreased the number of returns to the laser scanner as a function of laser path distance through the turbid water and suspended sediment concentration. The potential range of flow conditions within which through-water terrestrial laser scanning can be applied is established and additional error expected from

  20. The influence of site conditions on the ability to measure change from sequential laser scan surveys

    NASA Astrophysics Data System (ADS)

    Norman, Emma; Rosser, Nick; Lim, Michael; Petley, David

    2010-05-01

    The application of Terrestrial Laser Scanning (TLS) to monitor and quantify rock slope change has enabled significant improvements, at both the temporal and spatial scale, of understanding of rock slope change behaviour. However understanding the errors and accuracy associated with each application of the technique is crucial to ensure the real world scenario is accurately replicated and interpreted in the data. This is particularly important in the application of TLS to quantify slope change and to delimit detached object volumes from complex surfaces. A multitude of factors affect data quality, with errors associated with data collection, processing and interpretation as well as the limitations of the instrument itself. This paper recognises that site specific environmental conditions place limitations on scan surveys so that ideal TLS data collection scenarios are not always achievable and that therefore errors associated with these need to be quantified and considered in the data interpretation. This paper presents the results of a series of laboratory and field experiments designed to quantify the error, and identify its key sources, associated with a long-term monitoring programme of coastal cliffs in north east England. A key aim is to identify the minimum size of rockfalls that can be accurately detected at the cliffs with the methodology applied. Key limitations to the scan set-up design at the study site are: - scanning time limited by the tide - seaward length of the foreshore platform determining scanning range - cliff height - high angles of incidence occur at the tops and edges of scans - geological variation up the cliff affecting relative relief across the cliff - non-uniform reflectivity Of these, key to determining the accuracy of rockfall volume calculation are scan range, incidence angle and surface complexity and the errors associated with these were tested. We simulated worst case scenarios to identify the limits of these errors, testing high

  1. Parameterized approximation of lacunarity functions derived from airborne laser scanning point clouds of forested areas

    NASA Astrophysics Data System (ADS)

    Székely, Balázs; Kania, Adam; Varga, Katalin; Heilmeier, Hermann

    2017-04-01

    Lacunarity, a measure of the spatial distribution of the empty space is found to be a useful descriptive quantity of the forest structure. Its calculation, based on laser-scanned point clouds, results in a four-dimensional data set. The evaluation of results needs sophisticated tools and visualization techniques. To simplify the evaluation, it is straightforward to use approximation functions fitted to the results. The lacunarity function L(r), being a measure of scale-independent structural properties, has a power-law character. Previous studies showed that log(log(L(r))) transformation is suitable for analysis of spatial patterns. Accordingly, transformed lacunarity functions can be approximated by appropriate functions either in the original or in the transformed domain. As input data we have used a number of laser-scanned point clouds of various forests. The lacunarity distribution has been calculated along a regular horizontal grid at various (relative) elevations. The lacunarity data cube then has been logarithm-transformed and the resulting values became the input of parameter estimation at each point (point of interest, POI). This way at each POI a parameter set is generated that is suitable for spatial analysis. The expectation is that the horizontal variation and vertical layering of the vegetation can be characterized by this procedure. The results show that the transformed L(r) functions can be typically approximated by exponentials individually, and the residual values remain low in most cases. However, (1) in most cases the residuals may vary considerably, and (2) neighbouring POIs often give rather differing estimates both in horizontal and in vertical directions, of them the vertical variation seems to be more characteristic. In the vertical sense, the distribution of estimates shows abrupt changes at places, presumably related to the vertical structure of the forest. In low relief areas horizontal similarity is more typical, in higher relief areas

  2. Diameter distribution estimation with laser scanning based multisource single tree inventory

    NASA Astrophysics Data System (ADS)

    Kankare, Ville; Liang, Xinlian; Vastaranta, Mikko; Yu, Xiaowei; Holopainen, Markus; Hyyppä, Juha

    2015-10-01

    Tree detection and tree species recognition are bottlenecks of the airborne remote sensing-based single tree inventories. The effect of these factors in forest attribute estimation can be reduced if airborne measurements are aided with tree mapping information that is collected from the ground. The main objective here was to demonstrate the use of terrestrial laser scanning-derived (TLS) tree maps in aiding airborne laser scanning-based (ALS) single tree inventory (multisource single tree inventory, MS-STI) and its capability in predicting diameter distribution in various forest conditions. Automatic measurement of TLS point clouds provided the tree maps and the required reference information from the tree attributes. The study area was located in Evo, Finland, and the reference data was acquired from 27 different sample plots with varying forest conditions. The workflow of MS-STI included: (1) creation of automatic tree map from TLS point clouds, (2) automatic diameter at breast height (DBH) measurement from TLS point clouds, (3) individual tree detection (ITD) based on ALS, (4) matching the ITD segments to the field-measured reference, (5) ALS point cloud metric extraction from the single tree segments and (6) DBH estimation based on the derived metrics. MS-STI proved to be accurate and efficient method for DBH estimation and predicting diameter distribution. The overall accuracy (root mean squared error, RMSE) of the DBH was 36.9 mm. Results showed that the DBH accuracy decreased if the tree density (trees/ha) increased. The highest accuracies were found in old-growth forests (tree densities less than 500 stems/ha). MS-STI resulted in the best accuracies regarding Norway spruce (Picea abies (L.) H. Karst.)-dominated forests (RMSE of 29.9 mm). Diameter distributions were predicted with low error indices, thereby resulting in a good fit compared to the reference. Based on the results, diameter distribution estimation with MS-STI is highly dependent on the forest

  3. Long-range laser scanning and 3D imaging for the Gneiss quarries survey

    NASA Astrophysics Data System (ADS)

    Schenker, Filippo Luca; Spataro, Alessio; Pozzoni, Maurizio; Ambrosi, Christian; Cannata, Massimiliano; Günther, Felix; Corboud, Federico

    2016-04-01

    In Canton Ticino (Southern Switzerland), the exploitation of natural stone, mostly gneisses, is an important activity of valley's economies. Nowadays, these economic activities are menaced by (i) the exploitation costs related to geological phenomena such as fractures, faults and heterogeneous rocks that hinder the processing of the stone product, (ii) continuously changing demand because of the evolving natural stone fashion and (iii) increasing administrative limits and rules acting to protect the environment. Therefore, the sustainable development of the sector for the next decades needs new and effective strategies to regulate and plan the quarries. A fundamental step in this process is the building of a 3D geological model of the quarries to constrain the volume of commercial natural stone and the volume of waste. In this context, we conducted Terrestrial Laser Scanning surveys of the quarries in the Maggia Valley to obtain a detailed 3D topography onto which the geological units were mapped. The topographic 3D model was obtained with a long-range laser scanning Riegl VZ4000 that can measure from up to 4 km of distance with a speed of 147,000 points per second. It operates with the new V-line technology, which defines the surface relief by sensing differentiated signals (echoes), even in the presence of obstacles such as vegetation. Depending on the esthetics of the gneisses, we defined seven types of natural stones that, together with faults and joints, were mapped onto the 3D models of the exploitation sites. According to the orientation of the geological limits and structures, we projected the different rock units and fractures into the excavation front. This way, we obtained a 3D geological model from which we can quantitatively estimate the volume of the seven different natural stones (with different commercial value) and waste (with low commercial value). To verify the 3D geological models and to quantify exploited rock and waste volumes the same

  4. Digital Terrain Models from Mobile Laser Scanning Data in Moravian Karst

    NASA Astrophysics Data System (ADS)

    Tyagur, N.; Hollaus, M.

    2016-06-01

    During the last ten years, mobile laser scanning (MLS) systems have become a very popular and efficient technology for capturing reality in 3D. A 3D laser scanner mounted on the top of a moving vehicle (e.g. car) allows the high precision capturing of the environment in a fast way. Mostly this technology is used in cities for capturing roads and buildings facades to create 3D city models. In our work, we used an MLS system in Moravian Karst, which is a protected nature reserve in the Eastern Part of the Czech Republic, with a steep rocky terrain covered by forests. For the 3D data collection, the Riegl VMX 450, mounted on a car, was used with integrated IMU/GNSS equipment, which provides low noise, rich and very dense 3D point clouds. The aim of this work is to create a digital terrain model (DTM) from several MLS data sets acquired in the neighbourhood of a road. The total length of two covered areas is 3.9 and 6.1 km respectively, with an average width of 100 m. For the DTM generation, a fully automatic, robust, hierarchic approach was applied. The derivation of the DTM is based on combinations of hierarchical interpolation and robust filtering for different resolution levels. For the generation of the final DTMs, different interpolation algorithms are applied to the classified terrain points. The used parameters were determined by explorative analysis. All MLS data sets were processed with one parameter set. As a result, a high precise DTM was derived with high spatial resolution of 0.25 x 0.25 m. The quality of the DTMs was checked by geodetic measurements and visual comparison with raw point clouds. The high quality of the derived DTM can be used for analysing terrain changes and morphological structures. Finally, the derived DTM was compared with the DTM of the Czech Republic (DMR 4G) with a resolution of 5 x 5 m, which was created from airborne laser scanning data. The vertical accuracy of the derived DTMs is around 0.10 m.

  5. Sealing ability of three root-end filling materials prepared using an erbium: Yttrium aluminium garnet laser and endosonic tip evaluated by confocal laser scanning microscopy

    PubMed Central

    Nanjappa, A Salin; Ponnappa, KC; Nanjamma, KK; Ponappa, MC; Girish, Sabari; Nitin, Anita

    2015-01-01

    Aims: (1) To compare the sealing ability of mineral trioxide aggregate (MTA), Biodentine, and Chitra-calcium phosphate cement (CPC) when used as root-end filling, evaluated under confocal laser scanning microscope using Rhodamine B dye. (2) To evaluate effect of ultrasonic retroprep tip and an erbium:yttrium aluminium garnet (Er:YAG) laser on the integrity of three different root-end filling materials. Materials and Methods: The root canals of 80 extracted teeth were instrumented and obturated with gutta-percha. The apical 3 mm of each tooth was resected and 3 mm root-end preparation was made using ultrasonic tip (n = 30) and Er:YAG laser (n = 30). MTA, Biodentine, and Chitra-CPC were used to restore 10 teeth each. The samples were coated with varnish and after drying, they were immersed in Rhodamine B dye for 24 h. The teeth were then rinsed, sectioned longitudinally, and observed under confocal laser scanning microscope. Statistical Analysis Used: Data were analyzed using one-way analysis of variance (ANOVA) and a post-hoc Tukey's test at P < 0.05 (R software version 3.1.0). Results: Comparison of microleakage showed maximum peak value of 0.45 mm for Biodentine, 0.85 mm for MTA, and 1.05 mm for Chitra-CPC. The amount of dye penetration was found to be lesser in root ends prepared using Er:YAG laser when compared with ultrasonics, the difference was found to be statistically significant (P < 0.05). Conclusions: Root-end cavities prepared with Er:YAG laser and restored with Biodentine showed superior sealing ability compared to those prepared with ultrasonics. PMID:26180420

  6. Error Analysis of Terrestrial Laser Scanning Data by Means of Spherical Statistics and 3D Graphs

    PubMed Central

    Cuartero, Aurora; Armesto, Julia; Rodríguez, Pablo G.; Arias, Pedro

    2010-01-01

    This paper presents a complete analysis of the positional errors of terrestrial laser scanning (TLS) data based on spherical statistics and 3D graphs. Spherical statistics are preferred because of the 3D vectorial nature of the spatial error. Error vectors have three metric elements (one module and two angles) that were analyzed by spherical statistics. A study case has been presented and discussed in detail. Errors were calculating using 53 check points (CP) and CP coordinates were measured by a digitizer with submillimetre accuracy. The positional accuracy was analyzed by both the conventional method (modular errors analysis) and the proposed method (angular errors analysis) by 3D graphics and numerical spherical statistics. Two packages in R programming language were performed to obtain graphics automatically. The results indicated that the proposed method is advantageous as it offers a more complete analysis of the positional accuracy, such as angular error component, uniformity of the vector distribution, error isotropy, and error, in addition the modular error component by linear statistics. PMID:22163461

  7. Possibilities of a Personal Laser Scanning System for Forest Mapping and Ecosystem Services

    PubMed Central

    Liang, Xinlian; Kukko, Antero; Kaartinen, Harri; Hyyppä, Juha; Yu, Xiaowei; Jaakkola, Anttoni; Wang, Yunsheng

    2014-01-01

    A professional-quality, personal laser scanning (PLS) system for collecting tree attributes was demonstrated in this paper. The applied system, which is wearable by human operators, consists of a multi-constellation navigation system and an ultra-high-speed phase-shift laser scanner mounted on a rigid baseplate and consisting of a single sensor block. A multipass-corridor-mapping method was developed to process PLS data and a 2,000 m2 forest plot was utilized in the test. The tree stem detection accuracy was 82.6%; the root mean square error (RMSE) of the estimates of tree diameter at breast height (DBH) was 5.06 cm; the RMSE of the estimates of tree location was 0.38 m. The relative RMSE of the DBH estimates was 14.63%. The results showed, for the first time, the potential of the PLS system in mapping large forest plots. Further research on mapping accuracy in various forest conditions, data correction methods and multi-sensoral positioning techniques is needed. The utilization of this system in different applications, such as harvester operations, should also be explored. In addition to collecting tree-level and plot-level data for forest inventory, other possible applications of PLS for forest ecosystem services include mapping of canopy gaps, measuring leaf area index of large areas, documenting and visualizing forest routes feasible for recreation, hiking and berry and mushroom picking. PMID:24434879

  8. Fast and Robust STEM Reconstruction in Complex Environments Using Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Wang, D.; Hollaus, M.; Puttonen, E.; Pfeifer, N.

    2016-06-01

    Terrestrial Laser Scanning (TLS) is an effective tool in forest research and management. However, accurate estimation of tree parameters still remains challenging in complex forests. In this paper, we present a novel algorithm for stem modeling in complex environments. This method does not require accurate delineation of stem points from the original point cloud. The stem reconstruction features a self-adaptive cylinder growing scheme. This algorithm is tested for a landslide region in the federal state of Vorarlberg, Austria. The algorithm results are compared with field reference data, which show that our algorithm is able to accurately retrieve the diameter at breast height (DBH) with a root mean square error (RMSE) of ~1.9 cm. This algorithm is further facilitated by applying an advanced sampling technique. Different sampling rates are applied and tested. It is found that a sampling rate of 7.5% is already able to retain the stem fitting quality and simultaneously reduce the computation time significantly by ~88%.

  9. Use of Naturally Available Reference Targets to Calibrate Airborne Laser Scanning Intensity Data

    PubMed Central

    Vain, Ants; Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Litkey, Paula

    2009-01-01

    We have studied the possibility of calibrating airborne laser scanning (ALS) intensity data, using land targets typically available in urban areas. For this purpose, a test area around Espoonlahti Harbor, Espoo, Finland, for which a long time series of ALS campaigns is available, was selected. Different target samples (beach sand, concrete, asphalt, different types of gravel) were collected and measured in the laboratory. Using tarps, which have certain backscattering properties, the natural samples were calibrated and studied, taking into account the atmospheric effect, incidence angle and flying height. Using data from different flights and altitudes, a time series for the natural samples was generated. Studying the stability of the samples, we could obtain information on the most ideal types of natural targets for ALS radiometric calibration. Using the selected natural samples as reference, the ALS points of typical land targets were calibrated again and examined. Results showed the need for more accurate ground reference data, before using natural samples in ALS intensity data calibration. Also, the NIR camera-based field system was used for collecting ground reference data. This system proved to be a good means for collecting in situ reference data, especially for targets with inhomogeneous surface reflection properties. PMID:22574045

  10. Combined use of terrestrial laser scanning and IR thermography applied to a historical building.

    PubMed

    Costanzo, Antonio; Minasi, Mario; Casula, Giuseppe; Musacchio, Massimo; Buongiorno, Maria Fabrizia

    2014-12-24

    The conservation of architectural heritage usually requires a multidisciplinary approach involving a variety of specialist expertise and techniques. Nevertheless, destructive techniques should be avoided, wherever possible, in order to preserve the integrity of the historical buildings, therefore the development of non-destructive and non-contact techniques is extremely important. In this framework, a methodology for combining the terrestrial laser scanning and the infrared thermal images is proposed, in order to obtain a reconnaissance of the conservation state of a historical building. The proposed case study is represented by St. Augustine Monumental Compound, located in the historical centre of the town of Cosenza (Calabria, South Italy). Adopting the proposed methodology, the paper illustrates the main results obtained for the building test overlaying and comparing the collected data with both techniques, in order to outline the capabilities both to detect the anomalies and to improve the knowledge on health state of the masonry building. The 3D model, also, allows to provide a reference model, laying the groundwork for implementation of a monitoring multisensor system based on the use of non-destructive techniques.

  11. Plasmon resonance and the imaging of metal-impregnated neurons with the laser scanning confocal microscope

    PubMed Central

    Thompson, Karen J; Harley, Cynthia M; Barthel, Grant M; Sanders, Mark A; Mesce, Karen A

    2015-01-01

    The staining of neurons with silver began in the 1800s, but until now the great resolving power of the laser scanning confocal microscope has not been utilized to capture the in-focus and three-dimensional cytoarchitecture of metal-impregnated cells. Here, we demonstrate how spectral confocal microscopy, typically reserved for fluorescent imaging, can be used to visualize metal-labeled tissues. This imaging does not involve the reflectance of metal particles, but rather the excitation of silver (or gold) nanoparticles and their putative surface plasmon resonance. To induce such resonance, silver or gold particles were excited with visible-wavelength laser lines (561 or 640 nm), and the maximal emission signal was collected at a shorter wavelength (i.e., higher energy state). Because the surface plasmon resonances of noble metal nanoparticles offer a superior optical signal and do not photobleach, our novel protocol holds enormous promise of a rebirth and further development of silver- and gold-based cell labeling protocols. DOI: http://dx.doi.org/10.7554/eLife.09388.001 PMID:26670545

  12. Integrating optical satellite data and airborne laser scanning in habitat classification for wildlife management

    NASA Astrophysics Data System (ADS)

    Nijland, W.; Coops, N. C.; Nielsen, S. E.; Stenhouse, G.

    2015-06-01

    Wildlife habitat selection is determined by a wide range of factors including food availability, shelter, security and landscape heterogeneity all of which are closely related to the more readily mapped landcover types and disturbance regimes. Regional wildlife habitat studies often used moderate resolution multispectral satellite imagery for wall to wall mapping, because it offers a favourable mix of availability, cost and resolution. However, certain habitat characteristics such as canopy structure and topographic factors are not well discriminated with these passive, optical datasets. Airborne laser scanning (ALS) provides highly accurate three dimensional data on canopy structure and the underlying terrain, thereby offers significant enhancements to wildlife habitat mapping. In this paper, we introduce an approach to integrate ALS data and multispectral images to develop a new heuristic wildlife habitat classifier for western Alberta. Our method combines ALS direct measures of canopy height, and cover with optical estimates of species (conifer vs. deciduous) composition into a decision tree classifier for habitat - or landcover types. We believe this new approach is highly versatile and transferable, because class rules can be easily adapted for other species or functional groups. We discuss the implications of increased ALS availability for habitat mapping and wildlife management and provide recommendations for integrating multispectral and ALS data into wildlife management.

  13. Monitoring of Fluvial Transport in the Mountain River Bed Using Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Jozkow, G.; Borkowski, A.; Kasprzak, M.

    2016-06-01

    The fluvial transport is the surface process that has a strong impact on the topography changes, especially in mountain areas. Traditional hydrological measurements usually give a good understanding of the river flow, however, the information of the bedload movement in the rivers is still insufficient. In particular, there is limited knowledge about the movement of the largest clasts, i.e. boulders. This investigation addresses mentioned issues by employing Terrestrial Laser Scanning (TLS) to monitor annual changes of the mountain river bed. The vertical changes were estimated based on the Digital Elevation Model (DEM) of difference (DoD) while transported boulders were identified based on the distances between point clouds and RGB-coloured points. Combined RGB point clouds allowed also to measure 3D displacements of boulders. The results showed that the highest dynamic of the fluvial process occurred between years 2012-2013. Obtained DoD clearly indicated alternating zones of erosion and deposition of the sediment finer fractions in the local sedimentary traps. The horizontal displacement of the rock material in the river bed showed high complexity resulting in the displacement of large boulders (major axis about 0.8 m) for the distance up to 2.3 m.

  14. Laser scanning confocal microscope with programmable amplitude, phase, and polarization of the illumination beam.

    PubMed

    Boruah, B R; Neil, M A A

    2009-01-01

    We describe the design and construction of a laser scanning confocal microscope with programmable beam forming optics. The amplitude, phase, and polarization of the laser beam used in the microscope can be controlled in real time with the help of a liquid crystal spatial light modulator, acting as a computer generated hologram, in conjunction with a polarizing beam splitter and two right angled prisms assembly. Two scan mirrors, comprising an on-axis fast moving scan mirror for line scanning and an off-axis slow moving scan mirror for frame scanning, configured in a way to minimize the movement of the scanned beam over the pupil plane of the microscope objective, form the XY scan unit. The confocal system, that incorporates the programmable beam forming unit and the scan unit, has been implemented to image in both reflected and fluorescence light from the specimen. Efficiency of the system to programmably generate custom defined vector beams has been demonstrated by generating a bottle structured focal volume, which in fact is the overlap of two cross polarized beams, that can simultaneously improve both the lateral and axial resolutions if used as the de-excitation beam in a stimulated emission depletion confocal microscope.

  15. 3-D reconstruction of neurons from multichannel confocal laser scanning image series.

    PubMed

    Wouterlood, Floris G

    2014-04-10

    A confocal laser scanning microscope (CLSM) collects information from a thin, focal plane and ignores out-of-focus information. Scanning of a specimen, with stepwise axial (Z-) movement of the stage in between each scan, produces Z-series of confocal images of a tissue volume, which then can be used to 3-D reconstruct structures of interest. The operator first configures separate channels (e.g., laser, filters, and detector settings) for each applied fluorochrome and then acquires Z-series of confocal images: one series per channel. Channel signal separation is extremely important. Measures to avoid bleaching are vital. Post-acquisition deconvolution of the image series is often performed to increase resolution before 3-D reconstruction takes place. In the 3-D reconstruction programs described in this unit, reconstructions can be inspected in real time from any viewing angle. By altering viewing angles and by switching channels off and on, the spatial relationships of 3-D-reconstructed structures with respect to structures visualized in other channels can be studied. Since each brand of CLSM, computer program, and 3-D reconstruction package has its own proprietary set of procedures, a general approach is provided in this protocol wherever possible.

  16. Geomorphological analysis and classification of foredune ridges based on Terrestrial Laser Scanning (TLS) technology

    NASA Astrophysics Data System (ADS)

    Fabbri, Stefano; Giambastiani, Beatrice M. S.; Sistilli, Flavia; Scarelli, Frederico; Gabbianelli, Giovanni

    2017-10-01

    Along the North Adriatic Sea coast (Italy), vulnerability to climate change is further aggravated by anthropogenic influences, such as strong subsidence rate due to deep groundwater and gas abstraction, tourism and industry impacts. In this context, conservation and restoration of coastal sand dunes become extremely important especially because of their importance in terms of 'natural' coastal defense. This paper proposes an innovative geomorphological approach based on Terrestrial Laser Scanning - TLS, which allows us to measure and monitor morphometric dune evolution with high precision and details. Several TLS surveys were performed along the Ravenna coast (Adriatic Sea, Italy) and the resulting Digital Elevation Models (DEMs) were analyzed in order to classify the foredune ridges in three geomorphological sub-zones. The topographic, areal and volumetric variations over time of geomorphological units were calculated by GIS tools in order to identify seasonal trends or particular pattern. Meteo-marine climate conditions were also analyzed and Principal Component Analysis (PCA) was performed to correlate changes in morphology with meteo-marine forcing factors, highlighting the ones that most influence dune evolution and dynamics.

  17. Automatic Registration of Terrestrial Laser Scanning Point Clouds using Panoramic Reflectance Images.

    PubMed

    Kang, Zhizhong; Li, Jonathan; Zhang, Liqiang; Zhao, Qile; Zlatanova, Sisi

    2009-01-01

    This paper presents a new approach to the automatic registration of terrestrial laser scanning (TLS) point clouds using panoramic reflectance images. The approach follows a two-step procedure that includes both pair-wise registration and global registration. The pair-wise registration consists of image matching (pixel-to-pixel correspondence) and point cloud registration (point-to-point correspondence), as the correspondence between the image and the point cloud (pixel-to-point) is inherent to the reflectance images. False correspondences are removed by a geometric invariance check. The pixel-to-point correspondence and the computation of the rigid transformation parameters (RTPs) are integrated into an iterative process that allows for the pair-wise registration to be optimised. The global registration of all point clouds is obtained by a bundle adjustment using a circular self-closure constraint. Our approach is tested with both indoor and outdoor scenes acquired by a FARO LS 880 laser scanner with an angular resolution of 0.036° and 0.045°, respectively. The results show that the pair-wise and global registration accuracies are of millimetre and centimetre orders, respectively, and that the process is fully automatic and converges quickly.

  18. In vivo assessment of the structure of skin microcirculation by reflectance confocal-laser-scanning microscopy

    NASA Astrophysics Data System (ADS)

    Sugata, Keiichi; Osanai, Osamu; Kawada, Hiromitsu

    2012-02-01

    One of the major roles of the skin microcirculation is to supply oxygen and nutrition to the surrounding tissue. Regardless of the close relationship between the microcirculation and the surrounding tissue, there are few non-invasive methods that can evaluate both the microcirculation and its surrounding tissue at the same site. We visualized microcapillary plexus structures in human skin using in vivo reflectance confocal-laser-scanning microscopy (CLSM), Vivascope 3000® (Lucid Inc., USA) and Image J software (National Institutes of Health, USA) for video image processing. CLSM is a non-invasive technique that can visualize the internal structure of the skin at the cellular level. In addition to internal morphological information such as the extracellular matrix, our method reveals capillary structures up to the depth of the subpapillary plexus at the same site without the need for additional optical systems. Video images at specific depths of the inner forearm skin were recorded. By creating frame-to-frame difference images from the video images using off-line video image processing, we obtained images that emphasize the brightness depending on changes of intensity coming from the movement of blood cells. Merging images from different depths of the skin elucidates the 3-dimensional fine line-structure of the microcirculation. Overall our results show the feasibility of a non-invasive, high-resolution imaging technique to characterize the skin microcirculation and the surrounding tissue.

  19. Determination of the thickness and structure of the skin barrier by in vivo laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Lademann, J.; Richter, H.; Astner, S.; Patzelt, A.; Knorr, F.; Sterry, W.; Antoniou, Ch

    2008-04-01

    Normal skin barrier function is an essential aspect of skin homeostasis and regeneration. Dynamic inflammatory, proliferative and neoplastic skin processes such as wound healing, psoriasis and contact dermatitis are associated with a significant disruption of the skin barrier. In recent years, there has been increasing interest in evaluating cosmetic and pharmacologic products for their ability to restore these protective properties. The gold standard for characterization of barrier function has been the measurement of the transepidermal water loss, however the disadvantage of this method is its interference with several endogenous and exogenous factors such as hydration, perspiration and topically applied substances. This study was aimed to test the clinical applicability of a fluorescence confocal laser scanning microscope (LSM) for a systematic morphologic analysis of the structure, integrity and thickness of the stratum corneum in 10 otherwise healthy volunteers. The influence of skin treatment with commercial moisturizing cream on skin barrier function was evaluated in serial non-invasive examinations. Our findings showed that in vivo LSM may represent a simple and efficient method for the characterization of skin barrier properties, such as the thickness and hydration of the stratum corneum.

  20. Confocal laser-scanning microscopy of capillaries in normal and psoriatic skin

    NASA Astrophysics Data System (ADS)

    Archid, Rami; Patzelt, Alexa; Lange-Asschenfeldt, Bernhard; Ahmad, Sufian S.; Ulrich, Martina; Stockfleth, Eggert; Philipp, Sandra; Sterry, Wolfram; Lademann, Juergen

    2012-10-01

    An important and most likely active role in the pathogenesis of psoriasis has been attributed to changes in cutaneous blood vessels. The purpose of this study was to use confocal laser-scanning microscopy (CLSM) to investigate dermal capillaries in psoriatic and normal skin. The structures of the capillary loops in 5 healthy participants were compared with those in affected skin of 13 psoriasis patients. The diameters of the capillaries and papillae were measured for each group with CLSM. All investigated psoriasis patients showed elongated, widened, and tortuous microvessels in the papillary dermis, whereas all healthy controls showed a single capillary loop in each dermal papilla. The capillaries of the papillary loop and the dermal papilla were significantly enlarged in the psoriatic skin lesions (diameters 24.39±2.34 and 146.46±28.52 μm, respectively) in comparison to healthy skin (diameters 9.53±1.8 and 69.48±17.16 μm, respectively) (P<0.001). CLSM appears to represent a promising noninvasive technique for evaluating dermal capillaries in patients with psoriasis. The diameter of the vessels could be seen as a well-quantifiable indicator for the state of psoriatic skin. CLSM could be useful for therapeutic monitoring to delay possible recurrences.

  1. Automated analysis of barley organs using 3D laser scanning: an approach for high throughput phenotyping.

    PubMed

    Paulus, Stefan; Dupuis, Jan; Riedel, Sebastian; Kuhlmann, Heiner

    2014-07-15

    Due to the rise of laser scanning the 3D geometry of plant architecture is easy to acquire. Nevertheless, an automated interpretation and, finally, the segmentation into functional groups are still difficult to achieve. Two barley plants were scanned in a time course, and the organs were separated by applying a histogram-based classification algorithm. The leaf organs were represented by meshing algorithms, while the stem organs were parameterized by a least-squares cylinder approximation. We introduced surface feature histograms with an accuracy of 96% for the separation of the barley organs, leaf and stem. This enables growth monitoring in a time course for barley plants. Its reliability was demonstrated by a comparison with manually fitted parameters with a correlation R(2) = 0:99 for the leaf area and R(2) = 0:98 for the cumulated stem height. A proof of concept has been given for its applicability for the detection of water stress in barley, where the extension growth of an irrigated and a non-irrigated plant has been monitored.

  2. High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles.

    PubMed

    Conn, Adam; Pedmale, Ullas V; Chory, Joanne; Navlakha, Saket

    2017-07-26

    Transport networks serve critical functions in biological and engineered systems, and yet their design requires trade-offs between competing objectives. Due to their sessile lifestyle, plants need to optimize their architecture to efficiently acquire and distribute resources while also minimizing costs in building infrastructure. To understand how plants resolve this design trade-off, we used high-precision three-dimensional laser scanning to map the architectures of tomato, tobacco, or sorghum plants grown in several environmental conditions and through multiple developmental time points, scanning in total 505 architectures from 37 plants. Using a graph-theoretic algorithm that we developed to evaluate design strategies, we find that plant architectures lie along the Pareto front between two simple length-based objectives-minimizing total branch length and minimizing nutrient transport distance-thereby conferring a selective fitness advantage for plant transport processes. The location along the Pareto front can distinguish among species and conditions, suggesting that during evolution, natural selection may employ common network design principles despite different optimization trade-offs. Copyright © 2017 Elsevier Inc. All rights reserved.

  3. Laser scanning confocal microscopy and laser tweezers based experiments to understand dentine-bacteria interactions

    NASA Astrophysics Data System (ADS)

    Peng, Sum Chee; Mohanty, Samarendra; Gupta, P. K.; Kishen, Anil

    2007-02-01

    Failure of endodontic treatment is commonly due to Enterococcal infection. In this study influence of chemical treatments of type-I collagen membrane by chemical agents commonly used in endodontic treatment on Enterococcus faecalis cell adherence was evaluated. In order to determine the change in number of adhering bacteria after chemical treatment, confocal laser scanning microscopy was used. For this, overnight culture of E faecalis in All Culture broth was applied to chemically treated type-I collagen membrane. It was found that Ca(OH) II treated groups had statistically significant (p value=0.05) increase in population of bacteria adherence. The change in adhesion force between bacteria and collagen was determined by using optical tweezers (1064 nm). For this experiment, Type-I collagen membrane was soaked for 5 mins in a media that contained 50% all culture media and 50% saturated Ca(OH) II . The membrane was spread on the coverslip, on which diluted bacterial suspension was added. The force of laser tweezers on the bacteria was estimated at different trap power levels using viscous drag method and trapping stiffness was calculated using Equipartition theorem method. Presence of Ca(OH) II was found to increase the cell-substrate adherence force from 0.38pN to >2.1pN. Together, these experiments show that it was highly probable that the increase in adherence to collagen was due to a stronger adhesion in the presence of Ca (OH) II.

  4. Assessing and modeling moose (Alces alces) habitats with airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Melin, M.; Packalén, P.; Matala, J.; Mehtätalo, L.; Pusenius, J.

    2013-08-01

    In the analysis of forest resources, the use of ALS (airborne laser scanning) enables detailed three dimensional (3D) descriptions of forests and their vegetation. Simultaneously, ecologists have recognized that 3D information on vegetation is highly important in analyzing the habitat suitability of a given site. Recently, animals’ habitat preferences have been analyzed, for example, with GPS-collared animals. This has resulted in detailed knowledge about the animals’ movements both spatially and temporally. This study combines 3D information on vegetation obtained from ALS data with information about animal locations from GPS data. The aim was to map and analyze the habitat preferences of moose. The study area was located on the west coast of Finland. The data consisted of 18 GPS-collared moose (monitored from 2009 to 2010) and ALS data collected in 2010. We investigated how habitat structure changes as a function of distance to observed moose locations and how observed moose locations differ from randomly selected locations in terms of 3D structure. We also created a model-based habitat suitability map and tested it against moose occurrences. The results suggested that there are clear differences between the areas occupied and not occupied by moose and that these differences can be detected from ALS data. More importantly, ALS proved its potential in linking 3D descriptions of vegetation directly to observed moose locations without any proxy variables. These observations strongly support future studies.

  5. Parallel Processing Method for Airborne Laser Scanning Data Using a PC Cluster and a Virtual Grid.

    PubMed

    Han, Soo Hee; Heo, Joon; Sohn, Hong Gyoo; Yu, Kiyun

    2009-01-01

    In this study, a parallel processing method using a PC cluster and a virtual grid is proposed for the fast processing of enormous amounts of airborne laser scanning (ALS) data. The method creates a raster digital surface model (DSM) by interpolating point data with inverse distance weighting (IDW), and produces a digital terrain model (DTM) by local minimum filtering of the DSM. To make a consistent comparison of performance between sequential and parallel processing approaches, the means of dealing with boundary data and of selecting interpolation centers were controlled for each processing node in parallel approach. To test the speedup, efficiency and linearity of the proposed algorithm, actual ALS data up to 134 million points were processed with a PC cluster consisting of one master node and eight slave nodes. The results showed that parallel processing provides better performance when the computational overhead, the number of processors, and the data size become large. It was verified that the proposed algorithm is a linear time operation and that the products obtained by parallel processing are identical to those produced by sequential processing.

  6. Using Confocal Laser Scanning Microscopy to Probe the Milk Fat Globule Membrane and Associated Proteins

    PubMed Central

    Gallier, Sophie; Gragson, Derek; JiméNez-Flores, Rafael; Everett, David

    2010-01-01

    The bovine milk fat globule membrane (MFGM) is an important, biologically relevant membrane due to its functional and health properties. Its composition has been thoroughly studied but its structure, especially the lateral organization of its components, still remains unclear. We have used confocal laser scanning microscopy (CLSM) to investigate the surface structure of the MFGM in globules with different degree of processing using two types of fluorescently-labeled phospholipid probes and a protein dye. Using this technique, we have observed heterogeneities in the distribution of MFGM lipids and proteins relating to the processing and size of the globules. The effect of pre-treating the milk (centrifugation, pasteurization-homogenization and churning) was studied by double-staining the surface of the milk fat globules, followed by observation using CLSM, and by determining the phospholipid profile of raw milk, raw cream, processed milk and buttermilk powder. Our findings agree with other techniques by showing that the composition of the MFGM changes with processing through the loss of phospholipids and the adsorption of caseins and whey proteins onto the surface. PMID:20218614

  7. Automatic Registration of Terrestrial Laser Scanning Point Clouds using Panoramic Reflectance Images

    PubMed Central

    Kang, Zhizhong; Li, Jonathan; Zhang, Liqiang; Zhao, Qile; Zlatanova, Sisi

    2009-01-01

    This paper presents a new approach to the automatic registration of terrestrial laser scanning (TLS) point clouds using panoramic reflectance images. The approach follows a two-step procedure that includes both pair-wise registration and global registration. The pair-wise registration consists of image matching (pixel-to-pixel correspondence) and point cloud registration (point-to-point correspondence), as the correspondence between the image and the point cloud (pixel-to-point) is inherent to the reflectance images. False correspondences are removed by a geometric invariance check. The pixel-to-point correspondence and the computation of the rigid transformation parameters (RTPs) are integrated into an iterative process that allows for the pair-wise registration to be optimised. The global registration of all point clouds is obtained by a bundle adjustment using a circular self-closure constraint. Our approach is tested with both indoor and outdoor scenes acquired by a FARO LS 880 laser scanner with an angular resolution of 0.036° and 0.045°, respectively. The results show that the pair-wise and global registration accuracies are of millimetre and centimetre orders, respectively, and that the process is fully automatic and converges quickly. PMID:22574036

  8. Landslides Identification Using Airborne Laser Scanning Data Derived Topographic Terrain Attributes and Support Vector Machine Classification

    NASA Astrophysics Data System (ADS)

    Pawłuszek, Kamila; Borkowski, Andrzej

    2016-06-01

    Since the availability of high-resolution Airborne Laser Scanning (ALS) data, substantial progress in geomorphological research, especially in landslide analysis, has been carried out. First and second order derivatives of Digital Terrain Model (DTM) have become a popular and powerful tool in landslide inventory mapping. Nevertheless, an automatic landslide mapping based on sophisticated classifiers including Support Vector Machine (SVM), Artificial Neural Network or Random Forests is often computationally time consuming. The objective of this research is to deeply explore topographic information provided by ALS data and overcome computational time limitation. For this reason, an extended set of topographic features and the Principal Component Analysis (PCA) were used to reduce redundant information. The proposed novel approach was tested on a susceptible area affected by more than 50 landslides located on Rożnów Lake in Carpathian Mountains, Poland. The initial seven PCA components with 90% of the total variability in the original topographic attributes were used for SVM classification. Comparing results with landslide inventory map, the average user's accuracy (UA), producer's accuracy (PA), and overall accuracy (OA) were calculated for two models according to the classification results. Thereby, for the PCA-feature-reduced model UA, PA, and OA were found to be 72%, 76%, and 72%, respectively. Similarly, UA, PA, and OA in the non-reduced original topographic model, was 74%, 77% and 74%, respectively. Using the initial seven PCA components instead of the twenty original topographic attributes does not significantly change identification accuracy but reduce computational time.

  9. Wide-Area Mapping of Forest with National Airborne Laser Scanning and Field Inventory Datasets

    NASA Astrophysics Data System (ADS)

    Monnet, J.-M.; Ginzler, C.; Clivaz, J.-C.

    2016-06-01

    Airborne laser scanning (ALS) remote sensing data are now available for entire countries such as Switzerland. Methods for the estimation of forest parameters from ALS have been intensively investigated in the past years. However, the implementation of a forest mapping workflow based on available data at a regional level still remains challenging. A case study was implemented in the Canton of Valais (Switzerland). The national ALS dataset and field data of the Swiss National Forest Inventory were used to calibrate estimation models for mean and maximum height, basal area, stem density, mean diameter and stem volume. When stratification was performed based on ALS acquisition settings and geographical criteria, satisfactory prediction models were obtained for volume (R2 = 0.61 with a root mean square error of 47 %) and basal area (respectively 0.51 and 45 %) while height variables had an error lower than 19%. This case study shows that the use of nationwide ALS and field datasets for forest resources mapping is cost efficient, but additional investigations are required to handle the limitations of the input data and optimize the accuracy.

  10. Urban Road Detection in Airbone Laser Scanning Point Cloud Using Random Forest Algorithm

    NASA Astrophysics Data System (ADS)

    Kaczałek, B.; Borkowski, A.

    2016-06-01

    The objective of this research is to detect points that describe a road surface in an unclassified point cloud of the airborne laser scanning (ALS). For this purpose we use the Random Forest learning algorithm. The proposed methodology consists of two stages: preparation of features and supervised point cloud classification. In this approach we consider ALS points, representing only the last echo. For these points RGB, intensity, the normal vectors, their mean values and the standard deviations are provided. Moreover, local and global height variations are taken into account as components of a feature vector. The feature vectors are calculated on a basis of the 3D Delaunay triangulation. The proposed methodology was tested on point clouds with the average point density of 12 pts/m2 that represent large urban scene. The significance level of 15% was set up for a decision tree of the learning algorithm. As a result of the Random Forest classification we received two subsets of ALS points. One of those groups represents points belonging to the road network. After the classification evaluation we achieved from 90% of the overall classification accuracy. Finally, the ALS points representing roads were merged and simplified into road network polylines using morphological operations.

  11. Fast Edge Detection and Segmentation of Terrestrial Laser Scans Through Normal Variation Analysis

    NASA Astrophysics Data System (ADS)

    Che, E.; Olsen, M. J.

    2017-09-01

    Terrestrial Laser Scanning (TLS) utilizes light detection and ranging (lidar) to effectively and efficiently acquire point cloud data for a wide variety of applications. Segmentation is a common procedure of post-processing to group the point cloud into a number of clusters to simplify the data for the sequential modelling and analysis needed for most applications. This paper presents a novel method to rapidly segment TLS data based on edge detection and region growing. First, by computing the projected incidence angles and performing the normal variation analysis, the silhouette edges and intersection edges are separated from the smooth surfaces. Then a modified region growing algorithm groups the points lying on the same smooth surface. The proposed method efficiently exploits the gridded scan pattern utilized during acquisition of TLS data from most sensors and takes advantage of parallel programming to process approximately 1 million points per second. Moreover, the proposed segmentation does not require estimation of the normal at each point, which limits the errors in normal estimation propagating to segmentation. Both an indoor and outdoor scene are used for an experiment to demonstrate and discuss the effectiveness and robustness of the proposed segmentation method.

  12. Characterising the roughness properties of alluvial river banks using terrestrial laser scanning.

    NASA Astrophysics Data System (ADS)

    Powell, D. M.; Ackerley, D.

    2012-04-01

    Form roughness generated by the irregular topography of alluvial river banks can be a major component of the total flow resistance and bank shear stress with important consequences for modelling stage-discharge relationships and bank erosion. Current models of form roughness assume that the topographic features of a bank can be approximated by a series of Gaussian-shaped roughness elements parameterised in terms of a protrusion height H, a streamwise length scale σ (equivalent to the standard deviation of a Gaussian probability distribution) and a spacing λ between crests. It is further assumed that bank roughness parameters do not vary over time as the bank erodes. Empirical data supporting these assumptions are, however, limited and further work is needed to fully assess the roughness properties of alluvial banks and the sensitivity of bank roughness parameters to changes in bank geometry generated by bank erosion and retreat. In this study, the technique of terrestrial laser scanning is used to conduct high resolution surveys of actively eroding alluvial river banks on two rivers in the English Midlands. The data are used to derive digital elevation models of river bank microtopography which are subjected to a suite of visualisation and analytical techniques to determine the roughness properties of the banks at different scales and how these properties vary over time as bank erosion modifies the local topography. The findings are discussed in relation to modelling strategies for predicting flow resistance and bank shear stresses in alluvial rivers.

  13. Combined Use of Terrestrial Laser Scanning and IR Thermography Applied to a Historical Building

    PubMed Central

    Costanzo, Antonio; Minasi, Mario; Casula, Giuseppe; Musacchio, Massimo; Buongiorno, Maria Fabrizia

    2015-01-01

    The conservation of architectural heritage usually requires a multidisciplinary approach involving a variety of specialist expertise and techniques. Nevertheless, destructive techniques should be avoided, wherever possible, in order to preserve the integrity of the historical buildings, therefore the development of non-destructive and non-contact techniques is extremely important. In this framework, a methodology for combining the terrestrial laser scanning and the infrared thermal images is proposed, in order to obtain a reconnaissance of the conservation state of a historical building. The proposed case study is represented by St. Augustine Monumental Compound, located in the historical centre of the town of Cosenza (Calabria, South Italy). Adopting the proposed methodology, the paper illustrates the main results obtained for the building test overlaying and comparing the collected data with both techniques, in order to outline the capabilities both to detect the anomalies and to improve the knowledge on health state of the masonry building. The 3D model, also, allows to provide a reference model, laying the groundwork for implementation of a monitoring multisensor system based on the use of non-destructive techniques. PMID:25609042

  14. Investigation of sample behaviors inside on-chip electrophoresis microcapillary using confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Etoh, Shinichi; Higashi, Toshihito; Fujimura, Tsuyoshi; Hattori, Reiji; Kuroki, Yukinori

    2004-04-01

    We report the observation of sample behaviors using the confocal laser scanning microscopy (CLSM) in on-chip microcapillary. Sample loading by pinched valve injection is observed in a new cross injector shape, which has the structure added conventional cross injector to circle shape. In sample loading, because this structure causes a different electric field compared with that in conventional cross injector, high efficient sample plug injection was performed. It is important to investigate further the detailed sample profiles using the CLSM in sample loading for development of the on-chip microcapillary. We attempt the simulation of sample loading in the cross injector using the semiconductor device simulator MEDICI in order to investigate it in further detail. The sample movements in the channel turn along the Z-direction are observed using the CLSM. In order to miniaturize the microfluidic channel, it is necessarily needed to fold the channel, but then it is inevitable that sample dispersion occurs in the turn. We present sample flow profiles along the Z-direction in the turn using the CLSM and the influence on the electrophoretic separation. Also, we improve that fabrication of duct channel for exhaustion the vaporized xylene to outside the chip and the adhesion process

  15. Analysis of Cellular DNA Content by Flow and Laser Scanning Cytometry

    PubMed Central

    Darzynkiewicz, Zbigniew; Halicka, H. Dorota; Zhao, Hong

    2010-01-01

    This chapter covers several aspects of methodology of DNA content analysis in individual cells that is most commonly used for assessment of DNA ploidy and for enumeration of cells in particular phases of the cell cycle. Briefly presented are general principles of instrumentation and cell analysis by flow- and laser scanning- cytometry. Described are major methods designed to stain DNA with fluorochromes in live cells, in detergent-permeabilized cells, in cells fixed prior to DNA staining as well as in nuclei of cells isolated from paraffin-embedded tissues. Briefly addressed are approaches to estimate cellular DNA content in conjunction with cellular immunophenotype. Discussed are factors that affect accuracy of DNA content measurement such as: (i) differences in chromatin structure of the analyzed cells that restrict DNA accessibility to fluorochromes, (ii) stoichiometry of interaction between fluorochromes and DNA in chromatin and (iii) chemical mass action law defining dependency of fluorochrome binding to DNA in relation to fluorochrome concentration and number of potential binding sites in a sample. Described also are controls used to ensure accuracy of DNA ploidy determination, the principles in ploidy assessment and possible pitfalls in analysis. PMID:20687474

  16. Can low-resolution airborne laser scanning data be used to model stream rating curves?

    USGS Publications Warehouse

    Lyon, Steve; Nathanson, Marcus; Lam, Norris; Dahlke, Helen; Rutzinger, Martin; Kean, Jason W.; Laudon, Hjalmar

    2015-01-01

    This pilot study explores the potential of using low-resolution (0.2 points/m2) airborne laser scanning (ALS)-derived elevation data to model stream rating curves. Rating curves, which allow the functional translation of stream water depth into discharge, making them integral to water resource monitoring efforts, were modeled using a physics-based approach that captures basic geometric measurements to establish flow resistance due to implicit channel roughness. We tested synthetically thinned high-resolution (more than 2 points/m2) ALS data as a proxy for low-resolution data at a point density equivalent to that obtained within most national-scale ALS strategies. Our results show that the errors incurred due to the effect of low-resolution versus high-resolution ALS data were less than those due to flow measurement and empirical rating curve fitting uncertainties. As such, although there likely are scale and technical limitations to consider, it is theoretically possible to generate rating curves in a river network from ALS data of the resolution anticipated within national-scale ALS schemes (at least for rivers with relatively simple geometries). This is promising, since generating rating curves from ALS scans would greatly enhance our ability to monitor streamflow by simplifying the overall effort required.

  17. Revealing the Secrets of Stonehenge Through the Application of Laser Scanning, Photogrammetry and Visualisation Techniques

    NASA Astrophysics Data System (ADS)

    Bryan, P. G.; Abbott, M.; Dodson, A. J.

    2013-07-01

    Stonehenge is perhaps the most famous prehistoric monument in the world. Begun as a simple earthwork enclosure, it was built in several stages with the unique lintelled stone circle being erected in the Neolithic period in around 2,500 BC. Today Stonehenge, together with Avebury and other associated sites, form the heart of a World Heritage Site (WHS) with a unique and dense concentration of outstanding prehistoric monuments. In 2011 English Heritage (EH) embarked on a new survey of the monument. Undertaken by the Greenhatch Group, a commercial survey company based near Derby, a combination of laser scanning and photogrammetric approaches were used to generate the required scale and detailed level of output required by English Heritage. This paper will describe the background to this project and its context within previous survey activities at this World Heritage Site. It will explain the data acquisition technology and processes undertaken on site, the datasets derived from post-processing and their filtering and analysis within both subsequent research projects. Alongside a description of how the data is currently being exploited and proposed future applications within the conservation and management of the site, it will finish by considering the impact of developing geospatial imaging technologies.

  18. Applicability of confocal laser scanning microscopy for evaluation and monitoring of cutaneous wound healing

    NASA Astrophysics Data System (ADS)

    Lange-Asschenfeldt, Susanne; Bob, Adrienne; Terhorst, Dorothea; Ulrich, Martina; Fluhr, Joachim; Mendez, Gil; Roewert-Huber, Hans-Joachim; Stockfleth, Eggert; Lange-Asschenfeldt, Bernhard

    2012-07-01

    There is a high demand for noninvasive imaging techniques for wound assessment. In vivo reflectance confocal laser scanning microscopy (CLSM) represents an innovative optical technique for noninvasive evaluation of normal and diseased skin in vivo at near cellular resolution. This study was designed to test the feasibility of CLSM for noninvasive analysis of cutaneous wound healing in 15 patients (7 male/8 female), including acute and chronic, superficial and deep dermal skin wounds. A commercially available CLSM system was used for the assessment of wound bed and wound margins in order to obtain descriptive cellular and morphological parameters of cutaneous wound repair noninvasively and over time. CLSM was able to visualize features of cutaneous wound repair in epidermal and superficial dermal wounds, including aspects of inflammation, neovascularisation, and tissue remodelling in vivo. Limitations include the lack of mechanic fixation of the optical system on moist surfaces restricting the analysis of chronic skin wounds to the wound margins, as well as a limited optical resolution in areas of significant slough formation. By describing CLSM features of cutaneous inflammation, vascularisation, and epithelialisation, the findings of this study support the role of CLSM in modern wound research and management.

  19. Terrestrial laser scanning observations of geomorphic changes and varying lava lake levels at Erebus volcano, Antarctica

    NASA Astrophysics Data System (ADS)

    Jones, Laura K.; Kyle, Philip R.; Oppenheimer, Clive; Frechette, Jedediah D.; Okal, Marianne H.

    2015-03-01

    A Terrestrial Laser Scanning (TLS) instrument was used to image the topography of the Main Crater at Erebus volcano each December in 2008, 2009, and 2010. Our high-spatial resolution TLS scans provide unique insights into annual and decadal scale geomorphic evolution of the summit area when integrated with comparable data collected by an airborne instrument in 2001. We observe both a pattern of subsidence within the Inner Crater of the volcano and an ~ 3 m per-year drop in the lava lake level over the same time period that are suggestive of decreasing overpressure in an underlying magma reservoir. We also scanned the active phonolite lava lake hosted within the Inner Crater, and recorded rapid cyclic fluctuations in the level of the lake. These were sporadically interrupted by minor explosions by bursting gas bubbles at the lake surface. The TLS data permit calculation of lake level rise and fall speeds and associated rates of volumetric change within the lake. These new observations, when considered with prior determinations of rates of lake surface motion and gas output, are indicative of unsteady magma flow in the conduit and its associated variability in gas volume fraction.

  20. Reflective confocal laser scanning microscopy and nonlinear microscopy of cross-linked rabbit cornea

    NASA Astrophysics Data System (ADS)

    Krueger, Alexander; Hovakimyan, Marina; Ramirez, Diego F.; Stachs, Oliver; Guthoff, Rudolf F.; Heisterkamp, Alexander

    2009-07-01

    Cross-linking of the cornea with application of Ribovlavin and UV-A light is an evolving clinical treatment of the eye disease keratoconus. Despite the positive clinical track record of corneal cross-linking, the complex wound healing process after the treatment is still under investigation. In this study an animal model was used to clarify the state of wound healing 5 weeks after treatment. Cross-linked rabbit corneae were imaged with reflective confocal laser scanning and nonlinear microscopy, namely second harmonic imaging microscopy (SHIM) and two-photon excited autofluorescence. First results show that the NAD(P) H-autofluorescence of the corneal keratocytes and their scattering signal still show a signature of the treatment five weeks after the cross-linking procedure. The SHIM signals show the structural morphology of the fibrous collagen sheets in the stroma of the cornea. SHIM detected in the forward direction differs substantially from backward SHIM, but no signature of treatment was found in both detection channels of the SHIM signal.

  1. A dual growing method for the automatic extraction of individual trees from mobile laser scanning data

    NASA Astrophysics Data System (ADS)

    Li, Lin; Li, Dalin; Zhu, Haihong; Li, You

    2016-10-01

    Street trees interlaced with other objects in cluttered point clouds of urban scenes inhibit the automatic extraction of individual trees. This paper proposes a method for the automatic extraction of individual trees from mobile laser scanning data, according to the general constitution of trees. Two components of each individual tree - a trunk and a crown can be extracted by the dual growing method. This method consists of coarse classification, through which most of artifacts are removed; the automatic selection of appropriate seeds for individual trees, by which the common manual initial setting is avoided; a dual growing process that separates one tree from others by circumscribing a trunk in an adaptive growing radius and segmenting a crown in constrained growing regions; and a refining process that draws a singular trunk from the interlaced other objects. The method is verified by two datasets with over 98% completeness and over 96% correctness. The low mean absolute percentage errors in capturing the morphological parameters of individual trees indicate that this method can output individual trees with high precision.

  2. Airborne laser scanning point clouds filtering method based on the construction of virtual ground seed points

    NASA Astrophysics Data System (ADS)

    Liu, Xiaoqiang; Chen, Yanming; Cheng, Liang; Yao, Mengru; Deng, Shulin; Li, Manchun; Cai, Dong

    2017-01-01

    Filtering of airborne laser scanning (ALS) point clouds into ground and nonground points is a core postprocessing step for ALS data. A hierarchical filtering method, which has high operating efficiency and accuracy because of the combination of multiscale morphology and progressive triangulated irregular network (TIN) densification (PTD), is proposed. In the proposed method, the grid is first constructed for the ALS point clouds, and virtual seed points are set by analyzing the shape and elevation distribution of points within the grid. Then, the virtual seed points are classified as ground or nonground using the multiscale morphological method. Finally, the virtual ground seed points are utilized to generate the initial TIN, and the filter is completed by iteratively densifying the initial TIN. We used various ALS data to test the performance of the proposed method. The experimental results show that the proposed filtering method has strong applicability for a variety of landscapes and, in particular, has lower commission error than the classical PTD filtering method in urban areas.

  3. Further resolution enhancement of high-sensitivity laser scanning photothermal microscopy applied to mouse endogenous

    NASA Astrophysics Data System (ADS)

    Nakata, Kazuaki; Tsurui, Hiromichi; Kobayashi, Takayoshi

    2016-12-01

    Photothermal microscopy has intrinsically super resolution capability due to the bilinear dependence of signal intensity of pump and probe. In the present paper, we have made further resolution improvement of high-sensitivity laser scanning photothermal microscopy by applying non-linear detection. By this, the new method has the following advantages: (1) super resolution with 61% and 42% enhancement from the diffraction limit values of the probe and pump wavelengths, respectively, by a second-order non-linear scheme, (2) compact light source using inexpensive conventional diode lasers, (3) wide applicability to nonfluorescent materials such as gold nanoparticles (GNPs) and hematoxylin-eosin stained biological samples, (4) relative robustness to optical damage, and (5) a high-frame rate using a Galvano mirror. The maximum resolution is determined to be 160 nm in the second-order non-linear detection mode and 270 nm in the linear detection mode by the PT signal of GNPs. The pixel rate and frame rate for 300 × 300 pixel image are 50 μs and 4.5 s, respectively. The pixel and frame rate are shorter than the rates, which are 1 ms and 100 s, respectively, using the piezo-driven stage system.

  4. Automatic Extraction of Road Surface and Curbstone Edges from Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Miraliakbari, A.; Hahn, M.; Sok, S.

    2015-05-01

    We present a procedure for automatic extraction of the road surface from geo-referenced mobile laser scanning data. The basic assumption of the procedure is that the road surface is smooth and limited by curbstones. Two variants of jump detection are investigated for detecting curbstone edges, one based on height differences the other one based on histograms of the height data. Region growing algorithms are proposed which use the irregular laser point cloud. Two- and four-neighbourhood growing strategies utilize the two height criteria for examining the neighborhood. Both height criteria rely on an assumption about the minimum height of a low curbstone. Road boundaries with lower or no jumps will not stop the region growing process. In contrast to this objects on the road can terminate the process. Therefore further processing such as bridging gaps between detected road boundary points and the removal of wrongly detected curbstone edges is necessary. Road boundaries are finally approximated by splines. Experiments are carried out with a ca. 2 km network of smalls streets located in the neighbourhood of University of Applied Sciences in Stuttgart. For accuracy assessment of the extracted road surfaces, ground truth measurements are digitized manually from the laser scanner data. For completeness and correctness of the region growing result values between 92% and 95% are achieved.

  5. Adaptive circle-ellipse fitting method for estimating tree diameter based on single terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Bu, Guochao; Wang, Pei

    2016-04-01

    Terrestrial laser scanning (TLS) has been used to extract accurate forest biophysical parameters for inventory purposes. The diameter at breast height (DBH) is a key parameter for individual trees because it has the potential for modeling the height, volume, biomass, and carbon sequestration potential of the tree based on empirical allometric scaling equations. In order to extract the DBH from the single-scan data of TLS automatically and accurately within a certain range, we proposed an adaptive circle-ellipse fitting method based on the point cloud transect. This proposed method can correct the error caused by the simple circle fitting method when a tree is slanted. A slanted tree was detected by the circle-ellipse fitting analysis, then the corresponding slant angle was found based on the ellipse fitting result. With this information, the DBH of the trees could be recalculated based on reslicing the point cloud data at breast height. Artificial stem data simulated by a cylindrical model of leaning trees and the scanning data acquired with the RIEGL VZ-400 were used to test the proposed adaptive fitting method. The results shown that the proposed method can detect the trees and accurately estimate the DBH for leaning trees.

  6. Performance analysis of freeware filtering algorithms for determining ground surface from airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Julge, Kalev; Ellmann, Artu; Gruno, Anti

    2014-01-01

    Numerous filtering algorithms have been developed in order to distinguish the ground surface from nonground points acquired by airborne laser scanning. These algorithms automatically attempt to determine the ground points using various features such as predefined parameters and statistical analysis. Their efficiency also depends on landscape characteristics. The aim of this contribution is to test the performance of six common filtering algorithms embedded in three freeware programs. The algorithms' adaptive TIN, elevation threshold with expand window, maximum local slope, progressive morphology, multiscale curvature, and linear prediction were tested on four relatively large (4 to 8 km2) and diverse landscape areas, which included steep sloped hills, urban areas, ridge-like eskers, and a river valley. The results show that in diverse test areas each algorithm yields various commission and omission errors. It appears that adaptive TIN is suitable in urban areas while the multiscale curvature algorithm is best suited in wooded areas. The multiscale curvature algorithm yielded the overall best results with average root-mean-square error values of 0.35 m.

  7. A novel near real-time laser scanning device for geometrical determination of pleural cavity surface.

    PubMed

    Kim, Michele M; Zhu, Timothy C

    2013-02-02

    During HPPH-mediated pleural photodynamic therapy (PDT), it is critical to determine the anatomic geometry of the pleural surface quickly as there may be movement during treatment resulting in changes with the cavity. We have developed a laser scanning device for this purpose, which has the potential to obtain the surface geometry in real-time. A red diode laser with a holographic template to create a pattern and a camera with auto-focusing abilities are used to scan the cavity. In conjunction with a calibration with a known surface, we can use methods of triangulation to reconstruct the surface. Using a chest phantom, we are able to obtain a 360 degree scan of the interior in under 1 minute. The chest phantom scan was compared to an existing CT scan to determine its accuracy. The laser-camera separation can be determined through the calibration with 2mm accuracy. The device is best suited for environments that are on the scale of a chest cavity (between 10cm and 40cm). This technique has the potential to produce cavity geometry in real-time during treatment. This would enable PDT treatment dosage to be determined with greater accuracy. Works are ongoing to build a miniaturized device that moves the light source and camera via a fiber-optics bundle commonly used for endoscopy with increased accuracy.

  8. Obstacle detection and spectral discrimination using multi-wavelength motionless wide angle laser scanning.

    PubMed

    Sahba, Kaveh; Alameh, Kamal E; Smith, Clifton L

    2008-04-14

    Static laser scanning over a wide angle is demonstrated by ranging to 20 laser beams generated by a novel cylindrical quasi-cavity waveguide, using laser triangulation. Baseline distances and outgoing angles unique to each laser beam are calculated by modelling the triangulation arrangement using a system of linear equations and plotting principal rays. The quasi-cavity waveguide, imaging lens and focal plane are also plotted. The system is calibrated by finding optimal values for uncertain instrumental parameters using constrained non-linear optimization. Distances calculated over 5m indoors result in accuracies above 93%. Discrete laser spectroscopy using 640nm and 785nm laser diodes is also demonstrated. Both injected laser beams follow the same optical path through the quasi-cavity waveguide, enabling spectral measurements to be made from the same point on an object for both wavelengths. The reflected red and infrared laser light is digitally recorded by a CCD imager and differences in reflected intensity enable discrimination between various natural objects. This provides more complete information about the perturbing object, including its 3D coordinates as well as limited identification of its surface material.

  9. Laser-scan lithography onto ultra-fine pipes 100 μm in diameter

    NASA Astrophysics Data System (ADS)

    Takahashi, Hiroshi; Sagara, Tomoya; Horiuchi, Toshiyuki

    2016-05-01

    It is required to develop a simple but effective method for fabricating micro components with cylindrical shapes such as spring parts used for contact-probe springs of electrical testing systems. Here, laser-scan lithography was researched for printing fine resist patterns used for etching masks on ultra-fine stainless-steel pipes with a diameter of 100 μm. At first, a pipe was coated with 3-μm thick positive resist. Second, the resist is exposed to laser light. As the laser light source, a violet laser with a wavelength of 408 nm was used. The laser beam was reshaped in a circle, and irradiated on the pipe by reducing it in 1/20 using a reduction projection optics composed of a 10X objective lens and a 2X imaging lens. The pipe was supported by the chuck of rotation stage, and exposured by moving it up and down and rotating it. The pipe position was adjusted as the laser spot came on the pipe center using the XY stage. Linearly arrayed 22 slit patterns with a length of 180 μm and a separation of 70μm were printed at each 90° rotation angle. That is, 88 slits in total were delineated at an exposure speed of 110 μm/s.

  10. Improved Correction Method for Water-Refracted Terrestrial Laser Scanning Data Acquired in the Mountain Channel

    NASA Astrophysics Data System (ADS)

    Miura, N.; Asano, Y.; Moribe, Y.

    2016-06-01

    Detailed information of underwater topography is required for better understanding and prediction of water and sediment transport in a mountain channel. Recent research showed promising utility of green-wavelength Terrestrial Laser Scanning (TLS) for measuring submerged stream-bed structure in fluvial environment. However, difficulty in acquiring reliable underwater data has been remained in the part of mountain channel where water surface has some gradient. Since horizontal water surface was a major premise for the existing water refraction correction method, significant error was resulted in such area. Therefore, this paper presents a modified method to correct water-refracted TLS data acquired over mountain channel with complex water-surface slope. Applicability of the modified method was validated using the field data and compared with the existing correction method and non-corrected data. The results showed that the modified method has much smaller error with RMSE value of 3 mm than the existing method (RMSE = 10 mm) and non-corrected data (RMSE = 23 mm). Presented method successfully corrected water-refracted TLS data acquired over sloped channel. This would enable us to quantitatively measure whole units of complex mountain channels, and help us to understand water dynamics better in the area.

  11. Grammar-based Automatic 3D Model Reconstruction from Terrestrial Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Yu, Q.; Helmholz, P.; Belton, D.; West, G.

    2014-04-01

    The automatic reconstruction of 3D buildings has been an important research topic during the last years. In this paper, a novel method is proposed to automatically reconstruct the 3D building models from segmented data based on pre-defined formal grammar and rules. Such segmented data can be extracted e.g. from terrestrial or mobile laser scanning devices. Two steps are considered in detail. The first step is to transform the segmented data into 3D shapes, for instance using the DXF (Drawing Exchange Format) format which is a CAD data file format used for data interchange between AutoCAD and other program. Second, we develop a formal grammar to describe the building model structure and integrate the pre-defined grammars into the reconstruction process. Depending on the different segmented data, the selected grammar and rules are applied to drive the reconstruction process in an automatic manner. Compared with other existing approaches, our proposed method allows the model reconstruction directly from 3D shapes and takes the whole building into account.

  12. Automatic fracture detection based on Terrestrial Laser Scanning data: A new method and case study

    NASA Astrophysics Data System (ADS)

    Cao, Ting; Xiao, Ancheng; Wu, Lei; Mao, Liguang

    2017-09-01

    Terrestrial Laser Scanning (TLS), widely known as light detection and ranging (LiDAR) technology, is increasingly used to obtain rapidly three-dimensional (3-D) geometry or highly detailed digital terrain models with millimetric point precision and accuracy. In this contribution, we proposed a simple and unbiased approach to identify fractures directly from 3-D surface model of natural outcrops generated from TLS data and thus acquire surface density, which can provide important supplement data for fracture related research. One outcrop from the Shizigou anticline in the Qaidam Basin (NW China) is taken as the case to validate the method and obtain optimal parameters, according to the references of surface density measured in the field and from the photos taken by high-resolution camera. The results show that with suitable parameters, the proposed method can identify most structural fractures quickly, providing a solution of extracting structural fractures from virtual outcrops based on TLS data. Furthermore, it will help a lot in analyzing the development of fractures and other related fields.

  13. Terrestrial laser scanning for geometry extraction and change monitoring of rubble mound breakwaters

    NASA Astrophysics Data System (ADS)

    Puente, I.; Lindenbergh, R.; González-Jorge, H.; Arias, P.

    2014-05-01

    Rubble mound breakwaters are coastal defense structures that protect harbors and beaches from the impacts of both littoral drift and storm waves. They occasionally break, leading to catastrophic damage to surrounding human populations and resulting in huge economic and environmental losses. Ensuring their stability is considered to be of vital importance and the major reason for setting up breakwater monitoring systems. Terrestrial laser scanning has been recognized as a monitoring technique of existing infrastructures. Its capability for measuring large amounts of accurate points in a short period of time is also well proven. In this paper we first introduce a method for the automatic extraction of face geometry of concrete cubic blocks, as typically used in breakwaters. Point clouds are segmented based on their orientation and location. Then we compare corresponding cuboids of three co-registered point clouds to estimate their transformation parameters over time. The first method is demonstrated on scan data from the Baiona breakwater (Spain) while the change detection is demonstrated on repeated scan data of concrete bricks, where the changing scenario was simulated. The application of the presented methodology has verified its effectiveness for outlining the 3D breakwater units and analyzing their changes at the millimeter level. Breakwater management activities could benefit from this initial version of the method in order to improve their productivity.

  14. Imaging of the surface resistance of an SRF cavity by low-temperature laser scanning microscopy

    SciTech Connect

    G. Ciovati, S.M. Anlage, A.V. Gurevich

    2013-06-01

    Temperature mapping of the outer surface of a superconducting radio-frequency cavity is a technique that is often used to identify lossy areas on the cavity surface. In this contribution, we present 2-D images of the superconducting state surface resistance R{sub s} of the inner surface of a superconducting radio-frequency (SRF) cavity obtained by low-temperature laser scanning microscopy. This technique, which is applied for the first time to study lossy regions in an operating SRF cavity, allows identifying 'hotspots' with about one order of magnitude better spatial resolution ( ~2 mm) than by thermometry. The R{sub s}-resolution is of the order of 1 {micro}{Ohm} at 3.3 GHz. Surface resistance maps with different laser power and optical images of the cavity surface are discussed in this contribution. It is also shown that the thermal gradient on the niobium surface created by the laser beam can move some of the hotspots, which are identified as locations of trapped bundle of fluxoids. The prospects for this microscope to identify defects that limit the performance of SRF cavities will also be discussed.

  15. Presynaptic structure of Aplysia single live neuron by atomic force and confocal laser scanning microscope.

    PubMed

    Park, Aee-Young; Chae, Yeon-Su; Lee, Seung-Hee; Kaang, Bong-Kiun; Lee, Seonghoon

    2013-05-02

    The structural and functional plasticity of Aplysia mechanosensory presynaptic neurons has been studied in relation with the mechanism underlying learning and memory. Long-term facilitation (LTF), which is a well-known cellular model for long-term memory in Aplysia, is accompanied by new synaptic structural growth or change. We developed a combined atomic force microscope and confocal laser scanning microscope (AFM-CLSM) system integrated with a MATLAB routine for image processing to concurrently obtain high-resolution 3-dimensional (3D) outer-surface morphological images and 3D interior fluorescence images. With our combined AFM-CLSM system, volumetric changes in the presynaptic structures (varicosities) of Aplysia live sensory-motor neuron cocultures were observed. The spatial distribution of synaptic vesicle molecules in the preexisting varicosities was monitored together with a volumetric change in the varicosities. Our combined AFM-CLSM system is successfully adapted for measuring learning-related structural changes and the movement of synaptic molecules in the single live neuron through interaction force and fluorescence imaging.

  16. Two-dimensional confocal laser scanning microscopy image correlation for nanoparticle flow velocimetry

    NASA Astrophysics Data System (ADS)

    Jun, Brian; Giarra, Matthew; Golz, Brian; Main, Russell; Vlachos, Pavlos

    2016-11-01

    We present a methodology to mitigate the major sources of error associated with two-dimensional confocal laser scanning microscopy (CLSM) images of nanoparticles flowing through a microfluidic channel. The correlation-based velocity measurements from CLSM images are subject to random error due to the Brownian motion of nanometer-sized tracer particles, and a bias error due to the formation of images by raster scanning. Here, we develop a novel ensemble phase correlation with dynamic optimal filter that maximizes the correlation strength, which diminishes the random error. In addition, we introduce an analytical model of CLSM measurement bias error correction due to two-dimensional image scanning of tracer particles. We tested our technique using both synthetic and experimental images of nanoparticles flowing through a microfluidic channel. We observed that our technique reduced the error by up to a factor of ten compared to ensemble standard cross correlation (SCC) for the images tested in the present work. Subsequently, we will assess our framework further, by interrogating nanoscale flow in the cell culture environment (transport within the lacunar-canalicular system) to demonstrate our ability to accurately resolve flow measurements in a biological system.

  17. Change Analysis of Laser Scans of Laboratory Rock Slopes Subject to Wave Attack Testing

    NASA Astrophysics Data System (ADS)

    Shen, Y.; Lindenbergh, R.; Hofland, B.; Kramer, R.

    2017-09-01

    For better understanding how coastal structures with gentle slopes behave during high energy events, a wave attack experiment representing a storm of 3000 waves was performed in a flume facility. Two setups with different steepness of slope were compared under the same conditions. In order to quantify changes in the rock slopes after the wave attack, a terrestrial laser scanner was used to obtain 3D coordinates of the rock surface before and after each experiment. Next, through a series of processing steps, the point clouds were converted to a suitable 2D raster for change analysis. This allowed to estimate detailed and quantitative change information. The results indicate that the area around the artificial coast line, defined as the intersection between sloped surface and wave surface, is most strongly affected by wave attacks. As the distances from the sloped surface to the waves are shorter, changes for the mildly sloped surface, slope 1 (1 : 10), are distributed over a larger area compared to the changes for the more steeply sloped surface, slope 2 (1 : 5). The results of this experiment show that terrestrial laser scanning is an effective and feasible method for change analysis of rock slopes in a laboratory setting. Most striking results from a process point of view is that the transport direction of the rocks change between the two different slopes: from seaward transport for the steeper slope to landward transport for the milder slope.

  18. Visualization of ultradeformable liposomes penetration pathways and their skin interaction by confocal laser scanning microscopy.

    PubMed

    Subongkot, Thirapit; Wonglertnirant, Nanthida; Songprakhon, Pucharee; Rojanarata, Theerasak; Opanasopit, Praneet; Ngawhirunpat, Tanasait

    2013-01-30

    The objective of this study was to elucidate the skin penetration pathway of the generated ultradeformable liposomes (ULs) with terpenes for transdermal drug delivery of fluorescein sodium (NaFl). ULs with d-limonene were selected to investigate the penetration pathways and vesicle-skin interaction in terms of release and attachment processes via Confocal Laser Scanning Microscopy (CLSM). A co-localization technique was employed to visualize the skin penetration behavior of UL-labeled red fluorescence (Rh-PE) and fluorescence-entrapped drug (NaFl) through porcine skin. Our results suggested that ULs with entrapped drug might attach to any part of the skin before releasing the entrapped drug into the skin. Most ULs and entrapped drug penetrated through hair follicles more than through the nonfollicular region. In summary, the transfollicular pathway was the major penetration pathway of ULs with d-limonene for transdermal drug delivery of NaFl, whereas the intercellular and transcellular pathways were the minor penetration pathways.

  19. Parallel Processing Method for Airborne Laser Scanning Data Using a PC Cluster and a Virtual Grid

    PubMed Central

    Han, Soo Hee; Heo, Joon; Sohn, Hong Gyoo; Yu, Kiyun

    2009-01-01

    In this study, a parallel processing method using a PC cluster and a virtual grid is proposed for the fast processing of enormous amounts of airborne laser scanning (ALS) data. The method creates a raster digital surface model (DSM) by interpolating point data with inverse distance weighting (IDW), and produces a digital terrain model (DTM) by local minimum filtering of the DSM. To make a consistent comparison of performance between sequential and parallel processing approaches, the means of dealing with boundary data and of selecting interpolation centers were controlled for each processing node in parallel approach. To test the speedup, efficiency and linearity of the proposed algorithm, actual ALS data up to 134 million points were processed with a PC cluster consisting of one master node and eight slave nodes. The results showed that parallel processing provides better performance when the computational overhead, the number of processors, and the data size become large. It was verified that the proposed algorithm is a linear time operation and that the products obtained by parallel processing are identical to those produced by sequential processing. PMID:22574032

  20. Combining mobile terrestrial laser scanning geometric and radiometric data to eliminate accessories in circular metro tunnels

    NASA Astrophysics Data System (ADS)

    Tan, Kai; Cheng, Xiaojun; Ju, Qiaoqiao

    2016-07-01

    Terrestrial laser scanning (TLS) is a noninvasive technique to monitor surface conditions and morphological characteristics of structures and has been successfully introduced to the regular inspection and maintenance of metro tunnels. To accurately analyze the deformation and structural conditions of a metro tunnel, nonliner points (e.g., outliers and accessories) should be detected and eliminated. Nevertheless, the accessories are attached very closely to the liner and cannot be thoroughly eliminated by three-dimensional (3D) geometric information. This study proposes to separate the liner and accessories by combining TLS geometric and radiometric information. A refitted mobile Faro Focus3D X330 system is used for data collection of a new-built metro tunnel in Hangzhou, China. The results show that the corrected intensity data are an effective physical criterion and a complementary data source to remove accessories that cannot be eliminated by geometric data. After the removal of accessories by geometric and radiometric data, the remaining liner points can accurately reflect the actual structural and deformation conditions of metro tunnels.

  1. Enamel erosion and prevention efficacy characterized by confocal laser scanning microscope.

    PubMed

    Maia, Ana Marly Araújo; Longbottom, Christopher; Gomes, Anderson Stevens Leonidas; Girkin, John Michael

    2014-06-01

    The aim of this study was to evaluate the erosion-inhibiting effect of two toothpastes on the development of erosion-like lesions, by a confocal laser scanning microscope (CLSM). Forty human enamel blocks were divided into five groups (n = 8), in accordance to evaluate the GC MI Paste Plus and Oral B with stannous fluoride, applied as slurries and associated with toothbrush. Specimens were submitted to an erosion challenge from citric acid (0.5%, pH = 2.8), for 5 min, six times a day, alternating in artificial saliva immersions. Reference group was not exposed to treatment. Part of specimens (Groups 02 and 03) was exposed twice daily just to slurries, for 2 min, therefore specimens from Groups 04 and 05 were also abraded, for 30 s. The enamel surfaces were morphological characterized using CLSM images, with mineral loss being measured using the resulting 3D images referenced to an un-challenged portion of the sample. Step values were compared using the one-way ANOVA test. CLSM was shown to be a viable, noncontact, and simple technique to characterize eroded surfaces. The statistical difference in the step size was significant between the groups (P = 0.001) and using multiple comparisons a statistically significant protective effect of toothpastes was shown when these were applied as slurries. Although groups submitted to tooth brush showed mineral loss similar to reference control group, due to the damages of abrasion associated. © 2014 Wiley Periodicals, Inc.

  2. Modeling Main Body of Overcrossing Bridge Based on Vehicle-Borne Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Chen, X.; Chen, M.; Wei, Z.; Zhong, R.

    2017-09-01

    Vehicle-borne laser scanning (VBLS) is widely used to collect urban data for various mapping and modelling systems. This paper proposes a strategy of feature extraction and 3d model reconstruction for main body of overcrossing bridges based on VBLS point clouds. As the bridges usually have a large span, and the clouds data is often affected by obstacles, we have to use round-trip cloud data to avoid missing part. To begin with, pick out the cloud of the bridge body by an interactive clip-box, and group points by scan-line, then sort the points by scanning angle on each scan line. Since the position under the vehicle have a fixed scan-angle, a virtual path can be obtained. Secondly, extract horizontal line segments perpendicular to the virtual path along adjacent scan-lines, and then cluster line segments into long line-strings, which represent the top and bottom edge. Finally, regularize the line-strings and build 3d surface model of the bridge body. Experimental studies have demonstrated its efficiency and accuracy in case of building bridge model. Modelling the stairs at the both end of the bridge will be the direction of the next step.

  3. Multi-frequency AOM for multi-beam laser scanning exposure system

    NASA Astrophysics Data System (ADS)

    Shinada, Hidetoshi

    2016-10-01

    Digital printing systems recorded on films or computer to plates (CTPs) have been required to improve their productivity and image quality. Under the circumstance, a printing technology of the multi-beam laser scanning for the drum capstan system, which is almost the same as optics configuration as the flat bed system, was developed using a newly developed multi-frequency acousto-optic modulator (AOM) as a key device instead of ultra-fast scanning devices toward a main scan direction. The multi-frequency AOM was developed with phased array-type transducers, achieving a wider bandwidth of over 160 MHz. The design consisted of a simultaneous three beams generation with interlace scan to avoid the beat effect by adjacent Doppler-shifted beams, which consequently attained the fastest recording speed of 5.0 mm/s compared with 2.0-3.0 mm/s of existing systems in those days. Furthermore, a couple of critical parameters of the multi-frequency AOM are studied, for example, a treatment of third-order intermodulation and also beat effect in connection with photosensitive media. As a result, the necessity of interlaces scanning to obtain good image quality without beat effect and also to allow a lower laser power to apply is proposed.

  4. Histopathological, immunohistochemical criteria and confocal laser-scanning data of arthrofibrosis.

    PubMed

    Ruppert, M; Theiss, C; Knöß, P; Kendoff, D; Krukemeyer, M G; Schröder, N; Brand-Saberi, B; Gehrke, T; Krenn, V

    2013-11-01

    Arthrofibrosis (af) is defined as a fibrosing disease of the synovial membrane, after joint operations, with painful restricted range of motion. The aim of this paper was to describe the histopathological substrate of af, hitherto only defined by clinical criteria. Based on a group of 222 tissue samples, the characteristic changes to af were analyzed. The control group comprised 29 cases with neosynovialis of the indifferent type. Due to cytoplasmic SM-actin positivity and the absence of specific cytoplasmic reactivity in CD 68 representation, af fibroblasts were characterized as myofibroblasts. In confocal laser-scanning microscopy, β-catenin-positive aggregates were detected in the cytoplasm. Over and above this, unequivocal colocalization of β-catenin and the tight junction protein ZO-1 became manifest, particularly on the cell membrane and, partly, in the cytoplasm. A threshold value of 20 β-catenin-positive cells/HPF was determined. This enables the histopathological diagnosis of an af to be made (sensitivity: 0.733, specificity: 0.867). Af is a fibrosing disease of the synovial membrane with variable grade of fibrotization (fibroblast cellularity). A threshold value of 20 β-catenin-positive fibroblasts per HPF was defined, which enables the histopathological diagnosis of af. Copyright © 2013 Elsevier GmbH. All rights reserved.

  5. A wavelet based algorithm for DTM extraction from airborne laser scanning data

    NASA Astrophysics Data System (ADS)

    Xu, Liang; Yang, Yan; Tian, Qingjiu

    2007-06-01

    The automatic extraction of Digital Terrain Model (DTM) from point clouds acquired by airborne laser scanning (ALS) equipment remains a problem in ALS data filtering nowadays. Many filter algorithms have been developed to remove object points and outliers, and to extract DTM automatically. However, it is difficult to filter in areas where few points have identical morphological or geological features that can present the bare earth. Especially in sloped terrain covered by dense vegetation, points representing bare earth are often identified as noisy data below ground. To extract terrain surface in these areas, a new algorithm is proposed. First, the point clouds are cut into profiles based on a scan line segmentation algorithm. In each profile, a 1D filtering procedure is determined from the wavelet theory, which is superior in detecting high frequency discontinuities. After combining profiles from different directions, an interpolated grid data representing DTM is generated. In order to evaluate the performance of this new approach, we applied it to the data set used in the ISPRS filter test in 2003. 2 samples containing mostly vegetation on slopes have been processed by the proposed algorithm. It can be seen that it filtered most of the objects like vegetation and buildings in sloped area, and smoothed the hilly mountain to be more close to its real terrain surface.

  6. Application of Laser Scanning Confocal Microscopy to Heat and Mass Transport Modeling in Porous Microstructures

    NASA Technical Reports Server (NTRS)

    Marshall, Jochen; Milos, Frank; Fredrich, Joanne; Rasky, Daniel J. (Technical Monitor)

    1997-01-01

    Laser Scanning Confocal Microscopy (LSCM) has been used to obtain digital images of the complicated 3-D (three-dimensional) microstructures of rigid, fibrous thermal protection system (TPS) materials. These orthotropic materials are comprised of refractory ceramic fibers with diameters in the range of 1 to 10 microns and have open porosities of 0.8 or more. Algorithms are being constructed to extract quantitative microstructural information from the digital data so that it may be applied to specific heat and mass transport modeling efforts; such information includes, for example, the solid and pore volume fractions, the internal surface area per volume, fiber diameter distributions, and fiber orientation distributions. This type of information is difficult to obtain in general, yet it is directly relevant to many computational efforts which seek to model macroscopic thermophysical phenomena in terms of microscopic mechanisms or interactions. Two such computational efforts for fibrous TPS materials are: i) the calculation of radiative transport properties; ii) the modeling of gas permeabilities.

  7. Deformations of a small mud volcano revealed by multi-temporal terrestrial laser scanning

    NASA Astrophysics Data System (ADS)

    Hayakawa, Yuichi S.; Kusumoto, Shigekazu; Matta, Nobuhisa

    2017-04-01

    Activities of mud volcanoes are often regarded as signals of tectonics both in subaerial and submarine environments. Characteristics of mud volcanoes, including the composition of mud, water and gas, the underground structure, and the surface morphology, have often been investigated to reveal their activities. Here we explore the spatial variation in the deformation of a small terrestrial mud volcano, which has hardly been revealed without the use of high-resolution topographic measurements. The Murono mud volcano (north-central Japan) exhibits displacements of its ground surface morphology both by the earthquake events and in the inter-seismic quiescent periods. Multiple-time terrestrial laser scanning (TLS) was applied to detect the spatial variations in the ground surface deformations. After registering the point cloud data at different times using numerous points on unchanged reference features, deformations of the central zone of the mud volcano were detected at the scale of centimeters to decimeters, including both central uplift and peripheral subsidence with an elliptic spatial pattern. Open cracks on the central uplift area were also mapped, whose formation was successfully modeled with the displacement and stress fields estimated by the strong earthquakes. More gradual changes in the surface elevation of the mud volcano during the inter-seismic quiescent periods were also detected by the TLS data, and it was revealed that the spatial location of the center of uplift could have changed after an earthquake event.

  8. The investigation of the dynamic morphology of block copolymer solutions by laser scanning confocal microscopy (LSCM)

    NASA Astrophysics Data System (ADS)

    Lee, Hyunjung

    2005-03-01

    Recently we applied laser scanning confocal microscopy (LSCM) for the study of block copolymer 3D morphology. Besides static measurement of microstructures (direct 3-D imaging of block copolymer morphology), LSCM also enables the tracking of the fast dynamic process which has been impossible by conventional microscopic techniques such as TEM (transmission electron microscopy) or AFM (atomic force microscopy). In this study, in-situ LSCM investigation of the morphology of confined photonic BCP solution was performed in conjunction with spectroscopic measurement for the first time. When a lamellar forming polystyrene-b-isoprene (480k-360k, PS/PI) in cumene was placed between cover glasses, the continuous evaporation of the solvent induced a shear field along the radial direction (evaporation direction). As a result, the photonic lamellar BCP solution over the whole area developed a series of concentric ring pattern covering entire visible colors (blue to red). Comparison of the experimental result with theoretical calculation (transfer matrix method) revealed that this phenomenon mainly comes from the change of the orientation of BCP lamella based on the reflectivity at each region along the radius..

  9. Towards Automatic Single-Sensor Mapping by Multispectral Airborne Laser Scanning

    NASA Astrophysics Data System (ADS)

    Ahokas, E.; Hyyppä, J.; Yu, X.; Liang, X.; Matikainen, L.; Karila, K.; Litkey, P.; Kukko, A.; Jaakkola, A.; Kaartinen, H.; Holopainen, M.; Vastaranta, M.

    2016-06-01

    This paper describes the possibilities of the Optech Titan multispectral airborne laser scanner in the fields of mapping and forestry. Investigation was targeted to six land cover classes. Multispectral laser scanner data can be used to distinguish land cover classes of the ground surface, including the roads and separate road surface classes. For forest inventory using point cloud metrics and intensity features combined, total accuracy of 93.5% was achieved for classification of three main boreal tree species (pine, spruce and birch).When using intensity features - without point height metrics - a classification accuracy of 91% was achieved for these three tree species. It was also shown that deciduous trees can be further classified into more species. We propose that intensity-related features and waveform-type features are combined with point height metrics for forest attribute derivation in area-based prediction, which is an operatively applied forest inventory process in Scandinavia. It is expected that multispectral airborne laser scanning can provide highly valuable data for city and forest mapping and is a highly relevant data asset for national and local mapping agencies in the near future.

  10. Forest understory trees can be segmented accurately within sufficiently dense airborne laser scanning point clouds.

    PubMed

    Hamraz, Hamid; Contreras, Marco A; Zhang, Jun

    2017-07-28

    Airborne laser scanning (LiDAR) point clouds over large forested areas can be processed to segment individual trees and subsequently extract tree-level information. Existing segmentation procedures typically detect more than 90% of overstory trees, yet they barely detect 60% of understory trees because of the occlusion effect of higher canopy layers. Although understory trees provide limited financial value, they are an essential component of ecosystem functioning by offering habitat for numerous wildlife species and influencing stand development. Here we model the occlusion effect in terms of point density. We estimate the fractions of points representing different canopy layers (one overstory and multiple understory) and also pinpoint the required density for reasonable tree segmentation (where accuracy plateaus). We show that at a density of ~170 pt/m² understory trees can likely be segmented as accurately as overstory trees. Given the advancements of LiDAR sensor technology, point clouds will affordably reach this required density. Using modern computational approaches for big data, the denser point clouds can efficiently be processed to ultimately allow accurate remote quantification of forest resources. The methodology can also be adopted for other similar remote sensing or advanced imaging applications such as geological subsurface modelling or biomedical tissue analysis.

  11. Analysis of shallow landslides by morphometry parameters derived from terrestrial laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Mayr, A.; Rutzinger, M.; Bremer, M.; Wiegand, C.; Kringer, K.; Geitner, C.

    2012-04-01

    Erosion by shallow landslides is a widespread and growing phenomenon in mountainous areas. The major consequences are loss of soil and regolith as well as damages on infrastructure and provision of unconsolidated material for secondary processes such as mudflows. In this study we present a concept for extracting morphometry parameters from terrestrial laser scanning (TLS) point clouds in order to investigate the relation between slope surface structure and regolith depth. TLS is used to collect high-resolution point cloud data of an affected slope in the Schmirn Valley (Tyrol, Austria). Regolith depth is considered to be one of the important factors for the development of shallow landslides. However, direct field measurements are labour- and time-consuming. In this study we developed an approach, to investigate the relation between regolith depth and surface morphometry parameters. The reference regolith depth information is derived from lightweight dynamic cone penetrometer tests (DCPT) within the test site. The suggested approach integrates spatial analysis of Geographic Information Systems and point cloud processing algorithms. It will help to enhance the prediction of shallow landslide occurrence by (i) deriving high resolution 3D morphometric parameters and (ii) determining regolith depth with a reasonable effort due to automation. In future we want to be able to contribute with this concept to the detailed modelling of shallow landslide susceptibility on alpine slopes.

  12. Interactions between soluble dietary fibers and wheat gluten in dough studied by confocal laser scanning microscopy.

    PubMed

    Li, Qian; Liu, Rui; Wu, Tao; Zhang, Min

    2017-05-01

    Four soluble dietary fiber (SDF) fractions characterized by major components of AXs, relatively narrow molecular weight distribution, different substituted ratio, and structure-sensitive parameter (ρ) were prepared from wheat bran. The fractions were added to wheat dough to determine the interactions between the dough's network and the SDF fractions relative to their physicochemical characteristics. Furthermore, a comprehensive study focusing on the dough texture characteristic, tensile properties, thermodynamic stability, and the microstructure was conducted by performing texture profile analysis (TPA), differential scanning calorimetry (DSC), and confocal laser scanning microscopy (CLSM) experiments. Additionally, an estimation function of the interactions parameters between the dough's network and the SDF fractions related to the factor molecular weight and ρ of the SDFs was established. The results indicated that the SDF fractions exhibiting a medium molecular weight, and a higher substitution degree and di-substituted ratio, were the most suitable fortifier providing benefits to the dough's qualities. Furthermore, the research methodology might support the high potential of SDF fractions as fortifier for flour-based products. Copyright © 2017. Published by Elsevier Ltd.

  13. Triangular mesh establishment of 3D laser scanning data based on ellipsoidal projection

    NASA Astrophysics Data System (ADS)

    Zheng, De-hua; Xu, Jia; Li, Jia; Wang, Xin-sen

    2011-10-01

    The establishment of high quality triangular mesh is one of the key steps in 3D laser scanning data processing. Traditional triangulation algorithms have been proposed directly on the basis of adjacency relation between points in 3D space. However, when the point density is non-uniform or the noise exists, the problems such as surface hole, dough sheet overlapping and inconsistent normal appear easily. In this paper, a triangular mesh establishing algorithm based on ellipsoidal projection is proposed. After comparing the theory of ellipsoidal projection and cylindrical projection, the proposed triangular mesh establishing algorithm is analyzed in detail including basic idea and implementation method. To evaluate the performance and efficiency of the proposed algorithm, two experiments are then carried out on the 3D point cloud data of a foundation pit. The results indicate that though the computational efficiency of proposed algorithm is a little inferior to the algorithm based on cylindrical projection, the proposed algorithm is more effective for establishing point cloud of both top and bottom of the object and the original topological relation of 3D scanning points can be maintained better.

  14. Using Multi-Scale Features for the 3d Semantic Labeling of Airborne Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Blomley, R.; Weinmann, M.

    2017-09-01

    In this paper, we present a novel framework for the semantic labeling of airborne laser scanning data on a per-point basis. Our framework uses collections of spherical and cylindrical neighborhoods for deriving a multi-scale representation for each point of the point cloud. Additionally, spatial bins are used to approximate the topography of the considered scene and thus obtain normalized heights. As the derived features are related with different units and a different range of values, they are first normalized and then provided as input to a standard Random Forest classifier. To demonstrate the performance of our framework, we present the results achieved on two commonly used benchmark datasets, namely the Vaihingen Dataset and the GML Dataset A, and we compare the results to the ones presented in related investigations. The derived results clearly reveal that our framework excells in classifying the different classes in terms of pointwise classification and thus also represents a significant achievement for a subsequent spatial regularization.

  15. Laser scanning confocal microscope with programmable amplitude, phase, and polarization of the illumination beam

    NASA Astrophysics Data System (ADS)

    Boruah, B. R.; Neil, M. A. A.

    2009-01-01

    We describe the design and construction of a laser scanning confocal microscope with programmable beam forming optics. The amplitude, phase, and polarization of the laser beam used in the microscope can be controlled in real time with the help of a liquid crystal spatial light modulator, acting as a computer generated hologram, in conjunction with a polarizing beam splitter and two right angled prisms assembly. Two scan mirrors, comprising an on-axis fast moving scan mirror for line scanning and an off-axis slow moving scan mirror for frame scanning, configured in a way to minimize the movement of the scanned beam over the pupil plane of the microscope objective, form the XY scan unit. The confocal system, that incorporates the programmable beam forming unit and the scan unit, has been implemented to image in both reflected and fluorescence light from the specimen. Efficiency of the system to programmably generate custom defined vector beams has been demonstrated by generating a bottle structured focal volume, which in fact is the overlap of two cross polarized beams, that can simultaneously improve both the lateral and axial resolutions if used as the de-excitation beam in a stimulated emission depletion confocal microscope.

  16. Evaluation of Wavelet Denoising Methods for Small-Scale Joint Roughness Estimation Using Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Bitenc, M.; Kieffer, D. S.; Khoshelham, K.

    2015-08-01

    The precision of Terrestrial Laser Scanning (TLS) data depends mainly on the inherent random range error, which hinders extraction of small details from TLS measurements. New post processing algorithms have been developed that reduce or eliminate the noise and therefore enable modelling details at a smaller scale than one would traditionally expect. The aim of this research is to find the optimum denoising method such that the corrected TLS data provides a reliable estimation of small-scale rock joint roughness. Two wavelet-based denoising methods are considered, namely Discrete Wavelet Transform (DWT) and Stationary Wavelet Transform (SWT), in combination with different thresholding procedures. The question is, which technique provides a more accurate roughness estimates considering (i) wavelet transform (SWT or DWT), (ii) thresholding method (fixed-form or penalised low) and (iii) thresholding mode (soft or hard). The performance of denoising methods is tested by two analyses, namely method noise and method sensitivity to noise. The reference data are precise Advanced TOpometric Sensor (ATOS) measurements obtained on 20 × 30 cm rock joint sample, which are for the second analysis corrupted by different levels of noise. With such a controlled noise level experiments it is possible to evaluate the methods' performance for different amounts of noise, which might be present in TLS data. Qualitative visual checks of denoised surfaces and quantitative parameters such as grid height and roughness are considered in a comparative analysis of denoising methods. Results indicate that the preferred method for realistic roughness estimation is DWT with penalised low hard thresholding.

  17. a Feasibility Study on Use of Generic Mobile Laser Scanning System for Detecting Asphalt Pavement Cracks

    NASA Astrophysics Data System (ADS)

    Chen, Xinqu; Li, Jonathan

    2016-06-01

    This study aims to automatically detect pavement cracks on urban roads by employing the 3D point clouds acquired by a mobile laser scanning (MLS) system. Our method consists of four steps: ground point filtering, high-pass convolution, matched filtering, and noise removal. First, a voxel-based upward growing method is applied to construct Digital Terrain Model (DTM) of the road surface. Then, a high-pass filter convolutes the DTM to detect local elevation changes that may embed cracking information. Next, a two-step matched filter is applied to extract crack features. Lastly, a noise removal process is conducted to refine the results. Instead of using MLS intensity, this study takes advantages of the MLS elevation information to perform automated crack detection from large-volume, mixed-density, unstructured MLS point clouds. Four types of cracks including longitudinal, transvers, random, and alligator cracks are detected. Our results demonstrated that the proposed method works well with the RIEGL VMX-450 point clouds and can detect cracks in moderate-to-severe severity (13 - 25 mm) within a 200 m by 30 m urban road segment located in Kingston, Ontario, at one time. Due to the resolution capability, small cracks with slight severity remain unclear in the MLS point cloud.

  18. Combined molecular ecological and confocal laser scanning microscopic analysis of peat bog methanogen populations.

    PubMed

    Upton, M; Hill, B; Edwards, C; Saunders, J R; Ritchie, D A; Lloyd, D

    2000-12-15

    Confocal laser scanning microscopy, using fluorescently labelled oligonucleotide probes targeting the 16S rRNA of different physiological groups of methanogens, was used to identify which methanogenic genera were present and to describe their in situ spatial locations in samples taken at different depths from blanket peat bog cores. Total bacterial DNA was also extracted and purified from the samples and used as template for amplification of 16S rRNA and regions of methyl CoM reductase-encoding genes using the polymerase chain reaction, as well as for oligonucleotide hybridisation experiments. These techniques, used in concert, demonstrated that methanogens of several physiological groups were present in highest numbers in the mid regions of 25 cm deep peat cores. Some discrepancies were apparent in the findings of the microscopic and molecular methods, though these may be partially accounted for by the different sensitivities of the techniques employed. The combined approaches used in this study gave an insight into the diversity and distribution of methanogens in peat environments not possible using molecular ecological methods alone.

  19. Use of naturally available reference targets to calibrate airborne laser scanning intensity data.

    PubMed

    Vain, Ants; Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Litkey, Paula

    2009-01-01

    We have studied the possibility of calibrating airborne laser scanning (ALS) intensity data, using land targets typically available in urban areas. For this purpose, a test area around Espoonlahti Harbor, Espoo, Finland, for which a long time series of ALS campaigns is available, was selected. Different target samples (beach sand, concrete, asphalt, different types of gravel) were collected and measured in the laboratory. Using tarps, which have certain backscattering properties, the natural samples were calibrated and studied, taking into account the atmospheric effect, incidence angle and flying height. Using data from different flights and altitudes, a time series for the natural samples was generated. Studying the stability of the samples, we could obtain information on the most ideal types of natural targets for ALS radiometric calibration. Using the selected natural samples as reference, the ALS points of typical land targets were calibrated again and examined. Results showed the need for more accurate ground reference data, before using natural samples in ALS intensity data calibration. Also, the NIR camera-based field system was used for collecting ground reference data. This system proved to be a good means for collecting in situ reference data, especially for targets with inhomogeneous surface reflection properties.

  20. Resolution enhancement of digital laser scanning fluorescence microscopy with a dual-lens optical pickup head

    NASA Astrophysics Data System (ADS)

    Tsai, Rung-Ywan; Chen, Jung-Po; Lee, Yuan-Chin; Chiang, Hung-Chih; Huang, Tai-Ting; Huang, Chun-Chieh; Cheng, Chih-Ming; Cheng, Chung-Ta; Lo, Feng-Hsiang; Tiao, Golden

    2016-10-01

    The resolution of the cell fluorescence image captured by a digital laser scanning microscopy with a modified dual-lens BD-ROM optical pickup head is enhanced by image registration and double sample frequency. A dual objective lens of red (655 nm) and blue (405 or 488 nm) laser sources with numerical apertures of 0.6 and 0.85 is used for sample focusing and position tracking and cell fluorescence image capturing, respectively. The image registration and capturing frequency are based on the address-coded patterns of a sample slide. The address-coded patterns are designed as a string of binary code, which comprises a plurality of base-straight lands and grooves and data-straight grooves. The widths of the base-straight lands, base-straight grooves, and data-straight grooves are 0.38, 0.38, and 0.76 μm, respectively. The numbers of sample signals in the x-direction are measured at every intersection point by intersecting the base intensity of the push-pull signal of the address-coded patterns, which has a minimum spacing of 0.38 μm. After taking a double sample frequency, the resolution of the measured cell fluorescence image is enhanced from 0.38 μm to the diffraction limit of the objective lens.

  1. In vivo laser scanning microscopic investigation of the decontamination of hazardous substances from the human skin

    NASA Astrophysics Data System (ADS)

    Lademann, J.; Patzelt, A.; Schanzer, S.; Richter, H.; Gross, I.; Menting, K. H.; Frazier, L.; Sterry, W.; Antoniou, C.

    2010-12-01

    The stimulation of the penetration of topically applied substances into the skin is a topic of intensive dermatological and pharmacological research. In this context, it was found that in addition to the intercellular penetration, the follicular penetration also represents an efficient penetration pathway. The hair follicles act as a long-term reservoir for topically applied substances. They are surrounded by all important target structures, such as blood capillaries, stem and dendritic cells. Therefore, the hair follicles, as well as the skin, need to be protected from hazardous substances. The traditional method of decontamination after respective accidental contacts consists of an intensive washing of the skin. However, during this mechanical procedure, the substances can be pushed even deeper into the hair follicles. In the present study, absorbent materials were applied to remove a fluorescent model substance from the skin without inducing mechanical stress. The results were compared to the decontamination effects obtained by intensive washing. Investigations were performed by means of in vivo laser scanning microscopy (LSM). The comparison revealed that decontamination with absorbent materials is more effective than decontamination with washing processes.

  2. Inspection of float glass using a novel retroreflective laser scanning system

    NASA Astrophysics Data System (ADS)

    Holmes, Jonathan D.

    1997-07-01

    Since 1988, Image Automation has marketed a float glass inspection system using a novel retro-reflective laser scanning system. The (patented) instrument scans a laser beam by use of a polygon through the glass onto a retro-reflective screen, and collects the retro-reflected light off the polygon, such that a stationary image of the moving spot on the screen is produced. The spot image is then analyzed for optical effects introduced by defects within the glass, which typically distort and attenuate the scanned laser beam, by use of suitable detectors. The inspection system processing provides output of defect size, shape and severity, to the factory network for use in rejection or sorting of glass plates to the end customer. This paper briefly describes the principles of operation, the system architecture, and limitations to sensitivity and measurement repeatability. New instruments based on the retro-reflective scanning method have recently been developed. The principles and implementation are described. They include: (1) Simultaneous detection of defects within the glass and defects in a mirror coating on the glass surface using polarized light. (2) A novel distortion detector for very dark glass. (3) Measurement of optical quality (flatness/refractive homogeneity) of the glass using a position sensitive detector.

  3. Quantification of chemotaxis during pediatric cardiac surgery by flow and laser scanning cytometry

    NASA Astrophysics Data System (ADS)

    Tarnok, Attila; Schmid, Joerg W.; Osmancik, Pavel; Lenz, Dominik; Pipek, Michal; Hambsch, Joerg; Gerstner, Andreas O.; Schneider, Peter

    2002-05-01

    Cardiac surgery with cardiopulmonary bypass (CPB) alters the leukocyte composition of the peripheral blood (PB). This response contributes to the sometimes adverse outcome with capillary leakage. Migration of activated cells to sites of inflammation, driven by chemokines is part of this response. In order to determine the chemotactic activity of patients serum during and after surgery we established an assay for PB leukocytes (PBL). PBL from healthy donors were isolated and 250,000 cells were placed into a migration chamber separated by a filter from a second lower chamber filled with patient serum. After incubation cells from top and bottom chamber were removed and stained with a cocktail of monoclonal antibodies for leukocyte subsets and analyzed on a flow cytometer (FCM). Cells at the bottom of the filter belong to the migrating compartment and were quantified by LSC after staining of nucleated cells. Increased chemotactic activity started at onset of anaesthesia followed by a phase of low activity immediately after surgery and a second phase of a high post-operative activity. The in vitro results correlated with results obtained by immunopenotyping of circulating PBL. Manipulation of the chemokine pattern might prove beneficial to prevent extravasation of cells leading to tissue damage. In chemotaxis assays with low amount of available serum the combined use of FCM and Laser Scanning LSC proved as an appropriate analytical tool.

  4. Simple Windows-based software for the control of laser scanning confocal microscopes.

    PubMed

    Hartell, Nicholas A

    2007-05-15

    Rapid advances in computer processing power and the appearance of low cost, high speed multifunction data acquisition hardware makes the control of confocal laser scanning microscopes (CLSMs) with standard laboratory hardware a potentially straightforward task. This paper describes software designed to control a Biorad MRC 600 scan head under Windows 2000 or XP. Using a single high speed, multifunction data acquisition board running under the Igor Pro software environment, waveforms required to drive the scan head galvanometers can be generated and up to two channels of images (768 x 512 pixels at 8 or 12 bit levels) captured live or at set intervals. Image averaging, zooming, panning and cropping are supported as is live region of interest measurements over time. The software can trigger or be triggered by external devices via TTL signals and, with the addition of a commercial focus controller, Z scans can also be made. Control of the original neutral density and emission filters of multiple laser-based systems is also supported via serial control. The software should be easily adaptable to control custom designed scanning systems or other older makes of CLSM and it can be integrated with additional acquisition boards for simultaneous electrophysiological recording.

  5. Laser scanning confocal microscopy for in situ monitoring of alkali-silica reaction.

    PubMed

    Collins, C L; Ideker, J H; Kurtis, K E

    2004-02-01

    Alkali-silica reaction (ASR) occurs in concrete between reactive siliceous components in the aggregate and the strongly alkaline pore solution, resulting in the formation of a potentially expansive gel product. Lithium additives have been shown to reduce expansion associated with ASR, but the mechanism(s) by which lithium reduces expansion have not been understood. Therefore, development of an in situ method to observe reactions associated with ASR is highly desirable, as it will allow for non-destructive observation of the reaction product formation and damage evolution over time, as the reaction progresses. A technique to image into mortar through glass aggregate by laser scanning confocal microscopy (LSCM), producing three-dimensional representations of the sample was developed. This LSCM technique was utilized to monitor the progress of alkali-silica reaction in mortar samples prepared with alkali-reactive glass aggregate both in the presence and in the absence of lithium additives: LiNO3, LiCl or LiOH. The method proved to be effective in qualitatively monitoring crack formation and growth and product formation, within cracks and at the paste/aggregate interface. In particular, dendritic products were observed at the paste/aggregate interface only in those samples containing lithium, suggesting that these products may play a role in ASR mitigation.

  6. IL-6 Adsorption Dynamics in Hemoadsorption Beads Studied Using Confocal Laser Scanning Microscopy

    PubMed Central

    Kimmel, Jeremy D.; Gibson, Gregory A.; Watkins, Simon C.; Kellum, John A.; Federspiel, William J.

    2010-01-01

    Sepsis is characterized by a systemic inflammatory response caused by infection, and can result in organ failure and death. Removal of inflammatory mediators such as cytokines from the circulating blood is a promising treatment for severe sepsis. We are developing an extracorporeal hemoadsorption device to remove cytokines from the blood using biocompatible, polymer sorbent beads. In this study, we used confocal laser scanning microscopy (CLSM) to directly examine adsorption dynamics of a cytokine (IL-6) within hemoadsorption beads. Fluorescently labeled IL-6 was incubated with sorbent particles, and CLSM was used to quantify spatial adsorption profiles of IL-6 within the sorbent matrix. IL-6 adsorption was limited to the outer 15μm of the sorbent particle over a relevant clinical time period, and intraparticle adsorption dynamics was modeled using classical adsorption/diffusion mechanisms. A single model parameter, α = qmax K / D, was estimated by fitting CLSM intensity profiles to our mathematical model, where qmax and K are Langmuir adsorption isotherm parameters, and D is the effective diffusion coefficient of IL-6 within the sorbent matrix. Given the large diameter of our sorbent beads (450μm), less than 20% of available sorbent surface area participates in cytokine adsorption. Development of smaller beads may accelerate cytokine adsorption by maximizing available surface area per bead mass. PMID:19904819

  7. Performance Analysis of a Pole and Tree Trunk Detection Method for Mobile Laser Scanning Data

    NASA Astrophysics Data System (ADS)

    Lehtomäki, M.; Jaakkola, A.; Hyyppä, J.; Kukko, A.; Kaartinen, H.

    2011-09-01

    Dense point clouds can be collected efficiently from large areas using mobile laser scanning (MLS) technology. Accurate MLS data can be used for detailed 3D modelling of the road surface and objects around it. The 3D models can be utilised, for example, in street planning and maintenance and noise modelling. Utility poles, traffic signs, and lamp posts can be considered an important part of road infrastructure. Poles and trees stand out from the environment and should be included in realistic 3D models. Detection of narrow vertical objects, such as poles and tree trunks, from MLS data was studied. MLS produces huge amounts of data and, therefore, processing methods should be as automatic as possible and for the methods to be practical, the algorithms should run in an acceptable time. The automatic pole detection method tested in this study is based on first finding point clusters that are good candidates for poles and then separating poles and tree trunks from other clusters using features calculated from the clusters and by applying a mask that acts as a model of a pole. The method achieved detection rates of 77.7% and 69.7% in the field tests while 81.0% and 86.5% of the detected targets were correct. Pole-like targets that were surrounded by other objects, such as tree trunks that were inside branches, were the most difficult to detect. Most of the false detections came from wall structures, which could be corrected in further processing.

  8. Assessment of iontophoretic and passive ungual penetration by laser scanning confocal microscopy.

    PubMed

    Dutet, Julie; Delgado-Charro, M Begoña

    2012-12-01

    To estimate the in vitro ungual penetration depth of sodium fluorescein and nile blue chloride by laser scanning confocal microscopy. The depth, uniformity and pathways of penetration of both markers into human nail during passive and iontophoretic experiments were investigated. The penetration of sodium fluorescein into the dorsal, ventral and intermediate layers of the nail was also studied. Transversal images were used to estimate directly the relative penetration of the markers with respect to the complete thickness of the nail. "Exposed layer" images allowed estimating the depth of penetration by taking xy-plans, starting by the exposed layer, and following the z axis into the nail. The fluorescent markers penetrated 7-12% of the nail thickness. Iontophoresis increased penetration of both markers compared to passive diffusion. However, ungual penetration was not modified by the intensity of current applied. Penetration into the dorsal, ventral, and intermediate nail layers was similar. The method developed allowed inter- and intra- nail variability to be accounted for. Iontophoresis enhanced moderately the penetration of the two markers into the nail plate as compared to passive diffusion. The confocal images suggested the transcellular pathway to be predominant during both passive and iontophoretic experiments.

  9. Methodology of evaluation of abrasive tool wear with the use of laser scanning microscopy.

    PubMed

    Lipiński, Dariusz; Kacalak, Wojciech; Tomkowski, Robert

    2014-01-01

    Grinding is one of the basic precise material removal methods. Abrasive and shape wear, as well as smearing of the tools' active surface handicap the processing results. The loss of cutting capacity in abrasive tools or alteration of their shape influences the surface quality and precision of the workpiece dimensions and its shape. Evaluation of the abrasive tool surface is the basic criterion of forecasting the tools' durability and the process results. The applied method of laser scanning made determination of the surface coordinates and subsequently of its geometric features with micrometric accuracy possible. Using the information on the abrasive tool surface geometric structure, a methodology of evaluation of the level of changes in geometric features of the tool during the grinding process was developed. Criteria for evaluation of the level of abrasive grains attritious wear, the degree of smearing of the abrasive tool surface and evaluation of the cutting capability of the abrasive tools were determined. The developed method allowed for evaluation of the level of abrasive tools' wear, and subsequently formed foundations for assessment of the influence of the grinding parameters on the durability of abrasive tools, evaluation of the influence of the parameters of the process of shaping the abrasive tools' active surfaces on their geometric characteristics and evaluation of the level of correlation between the monitored process parameters and the degree of the abrasive tools' wear.

  10. Assessment of relative accuracy of AHN-2 laser scanning data using planar features.

    PubMed

    van der Sande, Corné; Soudarissanane, Sylvie; Khoshelham, Kourosh

    2010-01-01

    AHN-2 is the second part of the Actueel Hoogtebestand Nederland project, which concerns the acquisition of high-resolution altimetry data over the entire Netherlands using airborne laser scanning. The accuracy assessment of laser altimetry data usually relies on comparing corresponding tie elements, often points or lines, in the overlapping strips. This paper proposes a new approach to strip adjustment and accuracy assessment of AHN-2 data by using planar features. In the proposed approach a transformation is estimated between two overlapping strips by minimizing the distances between points in one strip and their corresponding planes in the other. The planes and the corresponding points are extracted in an automated segmentation process. The point-to-plane distances are used as observables in an estimation model, whereby the parameters of a transformation between the two strips and their associated quality measures are estimated. We demonstrate the performance of the method for the accuracy assessment of the AHN-2 dataset over Zeeland province of The Netherlands. The results show vertical offsets of up to 4 cm between the overlapping strips, and horizontal offsets ranging from 2 cm to 34 cm.

  11. Multiple-Primitives Hierarchical Classification of Airborne Laser Scanning Data in Urban Areas

    NASA Astrophysics Data System (ADS)

    Ni, H.; Lin, X. G.; Zhang, J. X.

    2017-09-01

    A hierarchical classification method for Airborne Laser Scanning (ALS) data of urban areas is proposed in this paper. This method is composed of three stages among which three types of primitives are utilized, i.e., smooth surface, rough surface, and individual point. In the first stage, the input ALS data is divided into smooth surfaces and rough surfaces by employing a step-wise point cloud segmentation method. In the second stage, classification based on smooth surfaces and rough surfaces is performed. Points in the smooth surfaces are first classified into ground and buildings based on semantic rules. Next, features of rough surfaces are extracted. Then, points in rough surfaces are classified into vegetation and vehicles based on the derived features and Random Forests (RF). In the third stage, point-based features are extracted for the ground points, and then, an individual point classification procedure is performed to classify the ground points into bare land, artificial ground and greenbelt. Moreover, the shortages of the existing studies are analyzed, and experiments show that the proposed method overcomes these shortages and handles more types of objects.

  12. Precise plant height monitoring and biomass estimation with Terrestrial Laser Scanning in paddy rice

    NASA Astrophysics Data System (ADS)

    Tilly, N.; Hoffmeister, D.; Cao, Q.; Lenz-Wiedemann, V.; Miao, Y.; Bareth, G.

    2013-10-01

    Optimizing crop management is a major topic in the field of precision agriculture as the growing world population puts pressure on the efficiency of field production. Accordingly, methods to measure plant parameters with the needed precision and within-field resolution are required. Studies show that Terrestrial Laser Scanning (TLS) is a suitable method to capture small objects like crop plants. In this contribution, the results of multi-temporal surveys on paddy rice fields with the TLS system Riegl LMS-Z420i are presented. Three campaigns were carried out during the key vegetative stage of rice plants in the growing period 2012 to monitor the plant height. The TLS-derived point clouds are interpolated to visualize plant height above ground as crop surface models (CSMs) with a high resolution of 0.01 m. Spatio-temporal differences within the data of one campaign and between consecutive campaigns can be detected. The results were validated against manually measured plant heights with a high correlation (R2 = 0.71). Furthermore, the dependence of actual biomass from plant height was evaluated. To the present, no method for the non-destructive determination of biomass is found yet. Thus, plant parameters, like the height, have to be used for biomass estimations. The good correlation (R2 = 0.66) leads to the assumption that biomass can be estimated from plant height measurements. The results show that TLS can be considered as a very promising tool for precision agriculture.

  13. Dynamic occlusion detection and inpainting of in situ captured terrestrial laser scanning point clouds sequence

    NASA Astrophysics Data System (ADS)

    Chen, Chi; Yang, Bisheng

    2016-09-01

    Laser point clouds captured using terrestrial laser scanning (TLS) in an uncontrollable urban outdoor or indoor scene suffer from irregular shaped data blanks caused by dynamic occlusion that temporarily exists, i.e., moving objects, such as pedestrians or cars, resulting in integrality and quality losses of the scene data. This paper proposes a novel automatic dynamic occlusion detection and inpainting method for sequential TLS point clouds captured from one scan position. In situ collected laser point clouds sequences are indexed by establishing a novel panoramic space partition that assigns a three dimensional voxel to each laser point according to the scanning setups. Then two stationary background models are constructed at the ray voxel level using the laser reflectance intensity and geometrical attributes of the point set inside each voxel across the TLS sequence. Finally, the background models are combined to detect the points on the dynamic object, and the ray voxels of the detected dynamic points are tracked for further inpainting by replacing the ray voxels with the corresponding background voxels from another scan. The resulting scene is free of dynamic occlusions. Experiments validated the effectiveness of the proposed method for indoor and outdoor TLS point clouds captured by a commercial terrestrial scanner. The proposed method achieves high precision and recall rate for dynamic occlusion detection and produces clean inpainted point clouds for further processing.

  14. Co-Registration of DSMs Generated by Uav and Terrestrial Laser Scanning Systems

    NASA Astrophysics Data System (ADS)

    Ancil Persad, Ravi; Armenakis, Costas

    2016-06-01

    An approach for the co-registration of Digital Surface Models (DSMs) derived from Unmanned Aerial Vehicles (UAVs) and Terrestrial Laser Scanners (TLS) is proposed. Specifically, a wavelet-based feature descriptor for matching surface keypoints on the 2.5D DSMs is developed. DSMs are useful in wide-scope of various applications such as 3D building modelling and reconstruction, cultural heritage, urban and environmental planning, aircraft navigation/path routing, accident and crime scene reconstruction, mining as well as, topographic map revision and change detection. For these listed applications, it is not uncommon that there will be a need for automatically aligning multi-temporal DSMs which may have been acquired from multiple sensors, with different specifications over a period of time, and may have various overlaps. Terrestrial laser scanners usually capture urban facades in an accurate manner; however this is not the case for building roof structures. On the other hand, vertical photography from UAVs can capture the roofs. Therefore, the automatic fusion of UAV and laser-scanning based DSMs is addressed here as it serves various geospatial applications.

  15. Topographical surveys: Classical method versus 3D laser scanning. Case study - An application in civil engineering

    NASA Astrophysics Data System (ADS)

    Grigoraş, I.-R.; Covăsnianu, A.; Pleşu, G.; Benedict, B.

    2009-04-01

    The paper describes an experiment which took place in Iasi town, Romania, consisted in two different topographical survey techniques applied for one and the same objective placed in a block within the city (western part) - a thermal power station. The purpose was to compare those methods and to determine which one is proper to be used in this domain in terms of fastness, optimization and speed of data processing. First technique applied for our survey was the classical one, with a total station. Using the CAD technique, we obtained a final product (a dwg file) and a list of coordinates (a text file). The second method, which we focused our attention more, was the measurement with a very precise 3D laser scanstation, also very suitable in archeology. The data obtained were processed with special software. Result was a 3D model of the thermal power plant composed of measurable cloud point data. Finally, analyzing the advantages and disadvantages of each method, we came to the conclusion that the 3D laser scanning which we used matches well the application, in this case civil engineering, but the future of accepting and implementing this technique is in the hands of Romanian authorities.

  16. High Resolution Airborne Laser Scanning and Hyperspectral Imaging with a Small Uav Platform

    NASA Astrophysics Data System (ADS)

    Gallay, Michal; Eck, Christoph; Zgraggen, Carlo; Kaňuk, Ján; Dvorný, Eduard

    2016-06-01

    The capabilities of unmanned airborne systems (UAS) have become diverse with the recent development of lightweight remote sensing instruments. In this paper, we demonstrate our custom integration of the state-of-the-art technologies within an unmanned aerial platform capable of high-resolution and high-accuracy laser scanning, hyperspectral imaging, and photographic imaging. The technological solution comprises the latest development of a completely autonomous, unmanned helicopter by Aeroscout, the Scout B1-100 UAV helicopter. The helicopter is powered by a gasoline two-stroke engine and it allows for integrating 18 kg of a customized payload unit. The whole system is modular providing flexibility of payload options, which comprises the main advantage of the UAS. The UAS integrates two kinds of payloads which can be altered. Both payloads integrate a GPS/IMU with a dual GPS antenna configuration provided by OXTS for accurate navigation and position measurements during the data acquisition. The first payload comprises a VUX-1 laser scanner by RIEGL and a Sony A6000 E-Mount photo camera. The second payload for hyperspectral scanning integrates a push-broom imager AISA KESTREL 10 by SPECIM. The UAS was designed for research of various aspects of landscape dynamics (landslides, erosion, flooding, or phenology) in high spectral and spatial resolution.

  17. 3D local feature BKD to extract road information from mobile laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Liu, Yuan; Dong, Zhen; Liang, Fuxun; Li, Bijun; Peng, Xiangyang

    2017-08-01

    Extracting road information from point clouds obtained through mobile laser scanning (MLS) is essential for autonomous vehicle navigation, and has hence garnered a growing amount of research interest in recent years. However, the performance of such systems is seriously affected due to varying point density and noise. This paper proposes a novel three-dimensional (3D) local feature called the binary kernel descriptor (BKD) to extract road information from MLS point clouds. The BKD consists of Gaussian kernel density estimation and binarization components to encode the shape and intensity information of the 3D point clouds that are fed to a random forest classifier to extract curbs and markings on the road. These are then used to derive road information, such as the number of lanes, the lane width, and intersections. In experiments, the precision and recall of the proposed feature for the detection of curbs and road markings on an urban dataset and a highway dataset were as high as 90%, thus showing that the BKD is accurate and robust against varying point density and noise.

  18. Geometry and intensity based culvert detection in mobile laser scanning point clouds

    NASA Astrophysics Data System (ADS)

    Lin, Yi; Hyyppa, Juha

    2010-11-01

    Mobile laser scanning (MLS), which recently has been developing so quickly as a promising technology for mapping and remote sensing (RS), offers a good means to measure the fundamental geographic data, e.g. culverts, for urban planning and road engineering. This study as the first try presents a new automatic method to detect culverts in MLS point clouds, in which actually only partial characterization of this category of objects can be presented due to the restricted scanning zenith of MLS. The schematic is based on the raster-form of the data, and the digital terrain models (DTMs) with multi-leveled resolutions are first yielded by local minimum filtering. Then, the common layout of the expanded areas containing culverts is generalized as the theoretical basis, and the schematic components are derived to deploy the concrete judgment. The geometry and intensity information about culverts are both utilized to determine the real locations from coarse- to fine-scales. Numerical analysis based on the real-measured MLS data at the Espoonlahti test site has basically validated the proposed approach. Concretely, the statistical errors of the retrieved lengths and widths of the pedestrian culverts are less than 9% and 16% compared to the real ones individually, notwithstanding the inner heights innately in-accessible.

  19. Characterisation of Intensity Values on Terrestrial Laser Scanning for Recording Enhancement

    NASA Astrophysics Data System (ADS)

    Balaguer-Puig, M.; Molada-Tebar, A.; Marqués-Mateu, A.; Lerma, J. L.

    2017-08-01

    Mapping surveys based on terrestrial laser scanning (TLS) are common nowadays for different purposes such as documentation of cultural heritage assets. The chance to extract relevant information from TLS surveys depends not only on the fast acquisition of XYZ coordinates, but also on the meaningful intensity values of the fired objects. TLS behaviour depends on several known factors such as distance, texture, roughness, colour and albedo. This paper seeks to find out the mathematical relationship between the TLS intensity values and the colorimetric data using a colour chart. In order to do so, objective colour specification based on well-known colour spaces is needed. The approach used here started with scanning a colour chart containing a number of colour patches with known chromatic and reflection characteristics. After several transformations, the results allowed us to characterise the intensity behaviour of a time-of-flight laser scanner. The characterisation of the intensity values are tested indoor on the colour chart and outdoor on an archaeological shelter. Promising results are obtained to enhance the behaviour of the intensity values coming from the TLS.

  20. Elastomeric photo-actuators and their investigation by confocal laser scanning microscopy

    NASA Astrophysics Data System (ADS)

    Czaniková, Klaudia; Ilčíková, Markéta; Krupa, Igor; Mičušík, Matej; Kasák, Peter; Pavlova, Ewa; Mosnáček, Jaroslav; Chorvát, Dušan, Jr.; Omastová, Mária

    2013-10-01

    The photo-actuation behavior of nanocomposites based on ethylene-vinylacetate copolymer (EVA) and styrene-isoprene-styrene (SIS) block copolymer filled with well-dispersed and modified multiwalled carbon nanotubes (MWCNTs) is discussed in this paper. The nanocomposites were prepared by casting from solution. To improve the dispersion of the MWCNTs in EVA, the MWCNT surface was modified with a non-covalent surfactant, cholesteryl 1-pyrenecarboxylate (PyChol). To prepare SIS nanocomposites, the MWCNT surface was covalently modified with polystyrene chains. The good dispersion of the filler was confirmed by transmission electron microscopy (TEM). Special, custom-made punch/die molds were used to create a Braille element (BE)-like shape, which under shear forces induces a uniaxial orientation of the MWCNTs within the matrix. The uniaxial orientation of MWCNTs is an essential precondition to ensure the photo-actuating behavior of MWCNTs in polymeric matrices. The orientation of the MWCNTs within the matrices was examined by scanning electron microscopy (SEM). Nanocomposite BEs were illuminated from the bottom by a red light-emitting diode (LED), and the photo-actuation was investigated by confocal laser scanning microscopy (CLSM). When the BEs were exposed to light, a temporary increase in the height of the element was detected. This process was observed to be reversible: after switching off the light, the BEs returned to their original shape and height.

  1. Research of the coastal zone by the airborne laser scanning data (Verbyanaya bay-bar, sea of Azov)

    NASA Astrophysics Data System (ADS)

    Pogorelov, Anatoliy V.; Antonenko, Mihail; Boyko, Evgeniy

    2015-06-01

    In the area Verbyanaya bay-bar (Sea of Azov) in an attempt to create large-scale cartographic base and subsequent thematic mapping of the geographical environment components airborne laser scanning and aerial photography were conducted. Airborne laser scanning data formed the basis of a comprehensive study of the coastal zone components. Methodical research apparatus includes receiving and processing technology of laser reflection points, constructing highprecision digital elevation model and raster surfaces. Mosaic of aerial photography is converted into a format mosaic - a geometrically correct image of the terrain. Set of high-precision digital surface models and thematic raster images obtained for specific dates, allows to analyze the dynamic adjustment of components of the coastal zone (shoreline, beach, shore dam with surge prism).

  2. Analysis of a head-mounted display-type multifocus display system using a laser scanning method

    NASA Astrophysics Data System (ADS)

    Kim, Dong-Wook; Kwon, Yong-Moo; Park, Q.-Han; Kim, Sung-Kyu

    2011-03-01

    We developed a head-mounted display (HMD)-type multifocus display system using a laser-scanning method to provide an accommodation effect for viewers. This accomplishment indicates that providing a monocular depth cue is possible through this multifocus system. In the system, the optical path is changed by a scanning action. To provide an accurate accommodation effect for the viewer, the multifocus display system is designed and manufactured in accordance with the geometric analysis of the system's scanning action. Using a video camera as a substitute for the viewer, correct focus adjustment without the scanning action problem is demonstrated. By analyzing the scanning action and experimental results, we are able to illustrate the formation of a viewpoint in an HMD-type multifocus display system using a laser-scanning method. In addition, we demonstrate that the accommodation effect could be provided independent of the viewing condition of the viewer.

  3. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells.

    PubMed

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-12-08

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ≈90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria.

  4. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells

    NASA Astrophysics Data System (ADS)

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-12-01

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ~90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria.

  5. On the Airborne Laser Scanning data processing for capturing fuel layer and mapping fuel properties

    NASA Astrophysics Data System (ADS)

    Coluzzi, Rosa; Lasaponara, Rosa; Lanorte, Antonio

    2010-05-01

    ALS (Airborne Laser Scanning) is an active remote sensing technology, based on laser pulses, which measures properties of scattered light to find range and/or other information of a distant target. The range to an object is determined by measuring the time delay between transmission of a pulse and detection of the reflected signal. ASL can be mounted onboard an aeroplane or helicopter. The acquisition system consists of the following individual components: (i) laser ranging device, (ii) Inertial Measuring Unit (IMU), (iii) onboard Global Positioning System (GPS) positioning device, (iv) ground GPS data acquisition at the same time as the LiDAR survey, (v) Digital Camera (Optional). While each of these components are operating independently, integration of all of them that allows us to obtain measurements with a high level of accuracy. The LiDAR technology exceeds other methods such as stereo-photogrammetry or interferometric SAR particularly in vegetated areas due to the direct determination of elevation and the penetration capabilities of the laser beam through gaps in vegetation . Through its efficient data sampling capabilities Airborne Laser Scanning (ALS) has completely revolutionized the area of bathymetric and topographic surveying, corridor mapping and coastal and urban area monitoring. ALS data are used in land cover classification, to estimate forest tree height, to assess seasonal canopy differences, to obtain forest inventories. The applications of airborne ALS have been increasing rapidly over recent years. Recent studies have examined the possibility of using LIDAR in fuel type characterization and mapping The latest generation of airborne ALS, now available, is the Full -Waveform (FW) scanner which offers improved capabilities especially in areas with complex morphology and/or dense vegetation cover. Nowadays investigations based on the latest generation of ALS are still quite rare, the majority of published studies are based on data collected by

  6. Application of terrestrial laser scanning for coastal geomorphologic research questions in western Greece

    NASA Astrophysics Data System (ADS)

    Hoffmeister, Dirk; Curdt, Constanze; Tilly, Nora; Ntageretzis, Konstantin; Aasen, Helge; Vött, Andreas; Bareth, Georg

    2013-04-01

    Coasts are areas of permanent change, influenced by gradual changes and sudden impacts. In particular, western Greece is a tectonically active region, due to the nearby plate boundary of the Hellenic Arc. The region has suffered from numerous earthquakes and tsunamis during prehistoric and historic times and is thus characterized by a high seismic and tsunami hazard risk. Additionally, strong winter storms may reach considerable dimensions. In this study, terrestrial laser scanning was applied for (i) annual change detection at seven coastal areas of western Greece for three years (2009-2011) and (ii) accurate parameter detection of large boulders, dislocated by high-energy wave impacts. The Riegl LMS-Z420i laser scanner was used in combination with a precise DGPS system (Topcon HiPer Pro) for all surveys. Each scan position and a further target were recorded for georeferencing and merging of the point clouds. (i) For the annual detection of changes, reference points for the base station of the DGPS system were marked. High-resolution digital elevation models (HRDEM) were generated from each dataset of the different years and are compared to each other, resulting in mass balances. (ii) 3D-models of dislocated boulders were reconstructed and parameters (e.g. volume in combination with density measurements, distance and height above present sea-level) were derived for the solution of wave transport equations, which estimate the minimum wave height or velocity that is necessary for boulder movement. (i) Our results show that annual changes are detectable by multi-temporal terrestrial laser scanning. In general, volumetric changes and affected areas are quantifiable and maps of changes can be established. On exposed beach areas, bigger changes were detectable, where seagrass and sand is eroded and gravel accumulated. In opposite, only minor changes for elevated areas are derived. Dislocated boulders on several sites showed no movement. At coastal areas with a high

  7. Increase of Readability and Accuracy of 3d Models Using Fusion of Close Range Photogrammetry and Laser Scanning

    NASA Astrophysics Data System (ADS)

    Gašparović, M.; Malarić, I.

    2012-07-01

    The development of laser scanning technology has opened a new page in geodesy and enabled an entirely new way of presenting data. Products obtained by the method of laser scanning are used in many sciences, as well as in archaeology. It should be noted that 3D models of archaeological artefacts obtained by laser scanning are fully measurable, written in 1:1 scale and have high accuracy. On the other hand, texture and RGB values of the surface of the object obtained by a laser scanner have lower resolution and poorer radiometric characteristics in relation to the textures captured with a digital camera. Scientific research and the goal of this paper are to increase the accuracy and readability of the 3D model with textures obtained with a digital camera. Laser scanning was performed with triangulation scanner of high accuracy, Vivid 9i (Konica Minolta), while for photogrammetric recording digital camera Nikon D90 with a lens of fixed focal length 20 mm, was used. It is important to stress that a posteriori accuracy score of the global registration of point clouds in the form of the standard deviation was ± 0.136 mm while the average distance was only ± 0.080 mm. Also research has proven that the quality projection texture model increases readability. Recording of archaeological artefacts and making their photorealistic 3D model greatly contributes to archaeology as a science, accelerates processing and reconstruction of the findings. It also allows the presentation of findings to the general public, not just to the experts.

  8. Confocal laser scanning microscopy of liesegang rings in odontogenic cysts: analysis of three-dimensional image reconstruction.

    PubMed

    Scivetti, Michele; Lucchese, Alberta; Crincoli, Vito; Pilolli, Giovanni Pietro; Favia, Gianfranco

    2009-01-01

    Liesegang rings are concentric noncellular lamellar structures, occasionally found in inflammatory tissues. They have been confused with various parasites, algas, calcification, and psammoma bodies. The authors examined Liesegang rings from oral inflammatory cysts by both optical and confocal laser scanning microscopy, and perfomed a three-dimensional reconstruction. These investigations indicate that Liesegang rings are composed of multiple birefringent concentric rings, resulting from a progressive deposition of organic substances, with an unclear pathogenesis.

  9. Image-based tracking system for vibration measurement of a rotating object using a laser scanning vibrometer

    SciTech Connect

    Kim, Dongkyu Khalil, Hossam; Jo, Youngjoon; Park, Kyihwan

    2016-06-28

    An image-based tracking system using laser scanning vibrometer is developed for vibration measurement of a rotating object. The proposed system unlike a conventional one can be used where the position or velocity sensor such as an encoder cannot be attached to an object. An image processing algorithm is introduced to detect a landmark and laser beam based on their colors. Then, through using feedback control system, the laser beam can track a rotating object.

  10. Relics of Mining Activities in West Bohemia - Mapping by Airborne Laser Scanning

    NASA Astrophysics Data System (ADS)

    Faltýnová, M.; Pavelka, K.

    2013-07-01

    The part of the Czech Republic - West Bohemia is well known for mining activities, different types of raw materials have been extracted from mines near Jáchymov, Sokolov and other sites since medieval times till today. There are original maps of some sites, as well there is effort of some geologists to find and map relics of mining activities (such as digs visible in terrain) by land survey. The quality of these available maps is unfortunately questionable - due to its age or used methods. Our aim was to find resource useful for searching for these sites, than to use field survey to confirm our findings. We used available digital terrain model (DTM) based on airborne laser scanning (ALS) technology to map relics of mining activities in West Bohemia. The Czech Office for Surveying, Mapping and Cadastre started in 2008 project for terrain mapping using the ALS method. The aim of mapping was to get authentic and detailed DTM of the Czech Republic. About 2/3 of area is currently covered by the DTM based on ALS, this year the mapping should be complete. The dataset is characterised by the density of 1-2 points/m2 and the standard deviation in altitude of model points is up to 30 cm (in forested areas). We had DTM in form of shaded surface for one third of the Czech Republic. The shaded surface enables to highlight terrain break lines, which is suitable for archaeological research. Terrain modifications caused by human activity are characterized by terrain break lines, local tops or pits, which do not fit to local geomorphology. Visual image interpretation of the dataset is in the process.

  11. Computing multiple aggregation levels and contextual features for road facilities recognition using mobile laser scanning data

    NASA Astrophysics Data System (ADS)

    Yang, Bisheng; Dong, Zhen; Liu, Yuan; Liang, Fuxun; Wang, Yongjun

    2017-04-01

    In recent years, updating the inventory of road infrastructures based on field work is labor intensive, time consuming, and costly. Fortunately, vehicle-based mobile laser scanning (MLS) systems provide an efficient solution to rapidly capture three-dimensional (3D) point clouds of road environments with high flexibility and precision. However, robust recognition of road facilities from huge volumes of 3D point clouds is still a challenging issue because of complicated and incomplete structures, occlusions and varied point densities. Most existing methods utilize point or object based features to recognize object candidates, and can only extract limited types of objects with a relatively low recognition rate, especially for incomplete and small objects. To overcome these drawbacks, this paper proposes a semantic labeling framework by combing multiple aggregation levels (point-segment-object) of features and contextual features to recognize road facilities, such as road surfaces, road boundaries, buildings, guardrails, street lamps, traffic signs, roadside-trees, power lines, and cars, for highway infrastructure inventory. The proposed method first identifies ground and non-ground points, and extracts road surfaces facilities from ground points. Non-ground points are segmented into individual candidate objects based on the proposed multi-rule region growing method. Then, the multiple aggregation levels of features and the contextual features (relative positions, relative directions, and spatial patterns) associated with each candidate object are calculated and fed into a SVM classifier to label the corresponding candidate object. The recognition performance of combining multiple aggregation levels and contextual features was compared with single level (point, segment, or object) based features using large-scale highway scene point clouds. Comparative studies demonstrated that the proposed semantic labeling framework significantly improves road facilities recognition

  12. Morphological Changes Along a Dike Landside Slope Sampled by 4d High Resolution Terrestrial Laser Scanning

    NASA Astrophysics Data System (ADS)

    Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron

    2016-06-01

    Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).

  13. Comparison of Discrete Return and Waveform Terrestrial Laser Scanning for Dense Vegetation Filtering

    NASA Astrophysics Data System (ADS)

    Guarnieri, A.; Pirotti, F.; Vettore, A.

    2012-08-01

    In this paper we present the results of the comparison between two terrestrial laser scanners (TLS), a discrete return system (Riegl LMS-Z620) and an echo-digitizing system (Riegl VZ-400), employed for the survey of a dense forested area, in the italian Alps. The site is actually undergoing a strong debate among the inhabitants and local government authorities about the exploitation of the area as a huge quarry to produce building material. The dispute originates from the uncertainty about the instability of the underlying mountain slope, which was interested in 1966 by a landslide. The whole area was surveyed with the two laser scanners on February 2011 during the vegetation dormant period. A slight different processing workflow was applied to the collected datasets: the VZ-400 scans were pre-filtered by exploiting the "calibrated relative reflectance" readings and the multi-target capability provided by this laser scanning system. Next, two different spatial filters were applied to both the resulting georeferenced 3D models, in order to eliminate as much vegetation as possible: iterative filter and a custom morphological filter, developed by the authors. Achieved results show that for both datasets, the iterative and the morphological filters perform quite well for eliminating the vegetation, though some manual editing is still required since vegetation does not feature a prevalent growing direction. Furthermore, the comparison between the number of points left in the final DTMs shows that the VZ-400 provided a one order of magnitude denser point cloud wrt. the LMS-Z620. This demonstrates that a TLS with multi-target capability can potentially provide a more detailed DTM even in presence of dense vegetation.

  14. Application of laser scanning microscopy for the analysis of oral biofilm dissolution by different endodontic irrigants

    PubMed Central

    del Carpio-Perochena, Aldo; Bramante, Clovis Monteiro; Hungaro Duarte, Marco Antonio; de Andrade, Flaviana Bombarda; Cavenago, Bruno Cavalini; Villas-Bôas, Marcelo Haas; Ordinola-Zapata, Ronald; Amoroso-Silva, Pablo

    2014-01-01

    Background: Multi-specie biofilms are highly resistant to antimicrobials due to cellular interactions found in them. The purpose of this study was to evaluate, by confocal laser scanning microscopy, the biofilm dissolution effectiveness of different irrigant solutions on biofilms developed on infected dentin in situ. Materials and Methods: A total of 120 bovine dentin specimens infected intraorally (30/group) were treated by the following solutions: 2% of chlorhexidine digluconate, 1%, 2.5% and 5.25% of sodium hypochlorite (NaOCl). The solutions were utilized for 5, 15 and 30 min with 2 experimental volumes 500 μL and 1 mL. All the samples were stained using an acridine orange and the biofilm thickness before (control group) and after the experiments were evaluated, utilizing a confocal microscope at ×40. The Mann-Whitney U and the nom-parametric Kruskal-Wallis Dunns tests were utilized to determine the influence of the volume and to perform the comparisons among the groups respectively. The significance level was set at P < 0.05. Results: Statistical differences were not found among the control and the 2% chlorhexidine digluconate groups at any experimental period (P > 0.05). The biofilm dissolution treated with 1% NaOCl was directly proportional to the exposure time (P < 0.05). The higher values of biofilm dissolution were found in 2.5% and 5.25% NaOCl groups (P > 0.05). Conclusion: The higher exposure times and concentrations of NaOCl were not sufficient to dissolve 100% of the biofilm. However, all NaOCl solutions were more effective than 2% chlorhexidine digluconate to dissolve organic matter. PMID:25225556

  15. Confocal laser scanning microscopy and 3-D reconstructions of neuronal structures in human brain cortex.

    PubMed

    Belichenko, P V; Dahlström, A

    1995-09-01

    Human brain material was studied with Lucifer yellow (LY) microinjections, indirect Texas red immunofluorescence, and confocal laser scanning microscopy (CLSM). The scanned images were transferred to a Silicon Graphics (SG) IRIS computer equipped with software for reconstructing the 3-D architecture of cells. By employing dual channel CLSM (Bio-Rad MRC 600), LY-injected cells and Texas red immunofluorescence could be studied simultaneously. Autopsy material with 2- to 48-h postmortem delays (6 control and 2 Rett's syndrome cases) as well as biopsy material (14 cases with therapy-resistant partial epilepsy--TRPE--undergoing neurosurgery) were used. In each specimen, 100-200 pyramidal and nonpyramidal neurons were visualized by LY microinjection. Single neurons were imaged and 2-D reconstructions of each neuron were made using z-projections of serial optical images; 3-D reconstructions and rotations were computed using the SG workstation, with VoxelView software from Vital Images (UK), and stored in a "neuronal library" on laser or magnetic optical disks. In Ret's syndrome cases and in patients with TRPE various abnormalities in the dendritic geometry of pyramidal and nonpyramidal cells have been found. The combination of LY injections with immunofluorescence allows the investigation of transmitter-related substances around the LY-injected cells. Using antibodies to synaptic vesicle proteins, presynaptic elements docking onto individual spines have been demonstrated. This approach may contribute to the understanding of different neurological and psychiatric disorders and may be useful in the Mapping of the Human Brain project. It may also be integrated with functional imaging by PET scan and with the human genome project.

  16. Novel Laser Scan Lithography onto Deep Inside Surfaces of Fine Pipes Using a Reflection Rod

    NASA Astrophysics Data System (ADS)

    Saitou, Kenta; Horiuchi, Toshiyuki

    2009-04-01

    A novel laser scan lithography for patterning in deep fine pipes using a reflection rod was developed. As a previous research, patterning results using an optical fiber rod or a light-emitting diode (LED) rod were reported. However, the minimum inner diameter was 6 mm, and the pattern width was approximately 200 µm. Here, more precise patterning onto the inside of much finer pipes using a novel reflection rod is demonstrated. A violet laser beam of 408 nm wavelength was shaped using a micropinhole and focused onto the inner surface of the pipe by way of a reflection rod of 500 µm diameter. The tip of the reflection rod was cut and polished in 45° mirror surface and the laser beam was bent in a right angle when reflected on the mirror surface. A beam spot observation system composed of a charge-coupled device (CCD) camera and a television monitor was also added to observe the laser beam spot during the exposure. Specimen pipes were coated with 1-µm-thick positive THMR iP-3300 (Tokyo Ohka Kogyo) resist and scanned using a linear stage and a rotation stage and exposed to the laser light. The inside lithography was demonstrated for fine pipes of 1 mm inner diameter. Helical patterns with space widths of 9-20 µm were successfully delineated even at the deep inside position 20 mm away from the pipe entrance. Dense helical patterns of 100 µm narrow pitch and 12 µm space width and character patterns of 15 µm space width were also successfully delineated.

  17. Viability and antibacterial efficacy of four root canal disinfection techniques evaluated using confocal laser scanning microscopy

    PubMed Central

    Mathew, Joan; Emil, Jonathan; Paulaian, Benin; John, Bejoy; Raja, Jacob; Mathew, Jean

    2014-01-01

    Background: Several disinfection techniques have been recently introduced with the main objective of improving root canal disinfection in the inaccessible areas of the root canal system. This in vitro study was done to evaluate the antimicrobial effect and viability of Enterococcus faecalis biofilms using conventional irrigation, EndoActivator (Dentsply, Tulsa Dental, USA), diode laser irradiation and photon-initiated photoacoustic streaming (PIPS). Materials and Methods: Root canals of 130 single rooted mandibular premolars, standardized to a uniform length of 20 mm were instrumented until finishing file, F1 (Universal Protaper Rotary System, Dentsply, Tulsa Dental Specialties, USA). After smear layer removal and sterilization, five teeth were randomly selected to assure sterility before bacterial inoculation. The remaining 125 samples were contaminated with E. faecalis suspension, incubated for 21 days and divided into five groups (n = 25). In Group 1; untreated group (positive control), the root canals were not subjected to any disinfection procedure. Sampling was performed within the canals and the colony-forming unit count was evaluated for 20 samples. Five samples were selected to visualize the pattern of colonization at Level 1 (4 mm from the apex) and Level 2 (1 mm from the apex) by confocal laser scanning microscopy. Samples in Groups 2-5 namely conventional needle irrigation, EndoActivator, diode laser and PIPS were subjected to their respective disinfection procedures. Postdisinfection sample evaluation criteria was followed for all groups as same as that for Group 1. Results: Diode laser displayed the highest antibacterial efficacy and least viable bacteria than the other three disinfection techniques. Conclusion: Diode laser group showed better antibacterial efficacy and least viable bacteria when compared to conventional needle irrigation, PIPS and EndoActivator groups in minimally instrumented, experimentally infected root canals. PMID:25298645

  18. Comparison of high resolution terrestrial laser scanning and terrestrial photogrammetry for modeling applications

    NASA Astrophysics Data System (ADS)

    Özdemir, Samed; Bayrak, Temel

    2016-04-01

    3D documentation of cultural heritage and engineering projects is an important matter. These documentation applications, requires highest possible accuracy and detail to represent the actual surface correctly. Terrestrial photogrammetric method which is employed to produce 3D models to day, now can obtain dense point clouds thanks to advancements in computer technology. Terrestrial laser scanners gained popularity in the last decade because of their high capacity and today they are being widely used in many applications. However every application has its own requirements that depend on the type of application, modeling environment, accuracy and budget limitations. This means, for every application highest accuracy instruments are not always best, considering the facts that mentioned before. In this study, laser scanner and terrestrial photogrammetric methods' spatial and model accuracies investigated under various conditions which include measuring targets at different instrument to object distances then investigating the accuracy of these measurements, modeling an irregular shaped surface to compare two surfaces volume and surface areas, at last comparing dimensions of known geometrical shaped small objects. Also terrestrial laser scanners and terrestrial photogrammetric methods most suitable application conditions investigated in terms of cost, time, mobility and accuracy. Terrestrial laser scanner has the ability to, measure distances under cm accuracy and directly measuring 3D world but there is also some drawbacks like sensitive, bulky and expensive equipment. When it comes to terrestrial photogrammetry, it has above cm accuracy, comparatively fast (considering the image acquisition stage), inexpensive but it can be affected by the coarse geometry, surface texture and the environmental lighting. Key Words: Accuracy, Comparison, Model, Terrestrial Photogrammetry, Terrestrial Laser Scanning,.

  19. Accuracy analysis of height difference models derived from terrestrial laser scanning<