Current distribution and status of Himalayan ibex in upper Neelum Valley, District Neelum Azad Jammu and Kashmir, Pakistan.

PubMed

Ali, Usman; Ahmed, Khawaja Bashrat; Awan, Muhammad Siddique; Asraf, Shaid; Basher, Mohammad; Awan, Mohammad Naeem

2007-09-15

Nine months field survey was conducted from July 2004 to August 2005 to take the data on the distribution and population status of Himalayan ibex (Capra ibex sibirica) in the upper Neelum valley of Azad Kashmir. Survey was carried out using direct (senses) as well as indirect (sampling) methods. 122 animals of different categories were recorded in the study area. Total average population was composed of 31.79% male, 32.79% female, 25.41% young and 9.84% yearling animals. Various threats to the population of ibex in the area were also studied.

Sex-biased severity of sarcoptic mange at the same biological cost in a sexually dimorphic ungulate.

PubMed

López-Olvera, Jorge R; Serrano, Emmanuel; Armenteros, Anna; Pérez, Jesús M; Fandos, Paulino; Carvalho, João; Velarde, Roser; Cano-Manuel, Francisco J; Ráez, Arián; Espinosa, José; Soriguer, Ramón C; Granados, José E

2015-11-10

In sexually dimorphic species, male susceptibility to parasite infection and mortality is frequently higher than in females. The Iberian ibex (Capra pyrenaica) is a sexually dimorphic mountain ungulate endemic to the Iberian Peninsula commonly affected by sarcoptic mange, a chronic catabolic skin disease caused by Sarcoptes scabiei. Since 1992, sarcoptic mange affects the Iberian ibex population of the Sierra Nevada Natural Space (SNNS). This study aims at exploring whether mange severity, in terms of prevalence and its effects on body condition, is male-biased in Iberian ibex. One thousand and seventy-one adult Iberian ibexes (439 females and 632 males) were randomly shot-harvested in the SNNS from May 1995 to February 2008. Sarcoptic mange stage was classified as healthy, mildly infected or severely infected. Sex-biased prevalence of severe mange was evaluated by a Chi-square test whereas the interaction between mange severity and sex on body condition was assessed by additive models. Among scabietic individuals, the prevalence of severely affected males was 1.29 times higher than in females. On the other hand, both sexes were not able to take profit of a higher availability of seasonal food resources when sarcoptic, particularly in the severe stages. Sarcoptic mange severity is male-biased in Iberian ibex, though not mange effects on body condition. Behavioural, immunological and physiological characteristics of males may contribute to this partial sex-biased susceptibility to sarcoptic mange.

Ibex-associated malignant catarrhal fever-like disease in a group of bongo antelope (Tragelaphus euryceros)

USDA-ARS?s Scientific Manuscript database

A private zoological facility experienced an outbreak of fatal malignant catarrhal fever (MCF) in a group of bongo antelope (Tragelaphus euryceros). Three periparturient female bongos exhibited an acute onset of anorexia beginning ~6 weeks after being housed with a Nubian ibex (Capra nubiana). Disea...

Antimicrobial Resistance in Indicator Escherichia coli Isolates from Free-Ranging Livestock and Sympatric Wild Ungulates in a Natural Environment (Northeastern Spain)

PubMed Central

Porrero, M. C.; Mentaberre, G.; Serrano, E.; Mateos, A.; Domínguez, L.; Lavín, S.

2013-01-01

Antimicrobial resistance was assessed in indicator Escherichia coli isolates from free-ranging livestock and sympatric wild boar (Sus scrofa) and Iberian ibex (Capra pyrenaica) in a National Game Reserve in northeastern Spain. The frequency of antimicrobial resistance was low (0% to 7.9%). However, resistance to an extended-spectrum cephalosporin and fluoroquinolones was detected. PMID:23892753

DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation.

PubMed

Gebremedhin, Berihun; Flagstad, Øystein; Bekele, Afework; Chala, Desalegn; Bakkestuen, Vegar; Boessenkool, Sanne; Popp, Magnus; Gussarova, Galina; Schrøder-Nielsen, Audun; Nemomissa, Sileshi; Brochmann, Christian; Stenseth, Nils Chr; Epp, Laura S

2016-01-01

Human population expansion and associated degradation of the habitat of many wildlife species cause loss of biodiversity and species extinctions. The small Simen Mountains National Park in Ethiopia is one of the last strongholds for the preservation of a number of afro-alpine mammals, plants and birds, and it is home to the rare endemic Walia ibex, Capra walie. The narrow distribution range of this species as well as potential competition for resources with livestock, especially with domestic goat, Capra hircus, may compromise its future survival. Based on a curated afro-alpine taxonomic reference library constructed for plant taxon identification, we investigated the diet of the Walia ibex and addressed the dietary overlap with domestic goat using DNA metabarcoding of faecal samples. Faeces of both species were collected from different localities in the National Park. We show that both species are browsers, with forbs, shrubs and trees comprising the largest proportion of their diet, supplemented by grasses. There was a considerable overlap in dietary preferences. Several of the preferred diet items of the Walia ibex (Alchemilla sp., Hypericum revolutum, Erica arborea and Rumex sp.) were also among the most preferred diet items of the domestic goat. These results indicate that there is potential for competition between the two species, especially during the dry season, when resources are limited. Our findings, in combination with the expected increase in domestic herbivores, suggest that management plans should consider the potential threat posed by domestic goats to ensure future survival of the endangered Walia ibex.

DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation

PubMed Central

Gebremedhin, Berihun; Flagstad, Øystein; Bekele, Afework; Chala, Desalegn; Bakkestuen, Vegar; Boessenkool, Sanne; Popp, Magnus; Gussarova, Galina; Schrøder-Nielsen, Audun; Nemomissa, Sileshi; Brochmann, Christian; Stenseth, Nils Chr.

2016-01-01

Human population expansion and associated degradation of the habitat of many wildlife species cause loss of biodiversity and species extinctions. The small Simen Mountains National Park in Ethiopia is one of the last strongholds for the preservation of a number of afro-alpine mammals, plants and birds, and it is home to the rare endemic Walia ibex, Capra walie. The narrow distribution range of this species as well as potential competition for resources with livestock, especially with domestic goat, Capra hircus, may compromise its future survival. Based on a curated afro-alpine taxonomic reference library constructed for plant taxon identification, we investigated the diet of the Walia ibex and addressed the dietary overlap with domestic goat using DNA metabarcoding of faecal samples. Faeces of both species were collected from different localities in the National Park. We show that both species are browsers, with forbs, shrubs and trees comprising the largest proportion of their diet, supplemented by grasses. There was a considerable overlap in dietary preferences. Several of the preferred diet items of the Walia ibex (Alchemilla sp., Hypericum revolutum, Erica arborea and Rumex sp.) were also among the most preferred diet items of the domestic goat. These results indicate that there is potential for competition between the two species, especially during the dry season, when resources are limited. Our findings, in combination with the expected increase in domestic herbivores, suggest that management plans should consider the potential threat posed by domestic goats to ensure future survival of the endangered Walia ibex. PMID:27416020

European springtime temperature synchronises ibex horn growth across the eastern Swiss Alps

PubMed Central

Büntgen, Ulf; Liebhold, Andrew; Jenny, Hannes; Mysterud, Atle; Egli, Simon; Nievergelt, Daniel; Stenseth, Nils C; Bollmann, Kurt

2014-01-01

Direct effects of climate change on animal physiology, and indirect impacts from disruption of seasonal synchrony and breakdown of trophic interactions are particularly severe in Arctic and Alpine ecosystems. Unravelling biotic from abiotic drivers, however, remains challenging because high-resolution animal population data are often limited in space and time. Here, we show that variation in annual horn growth (an indirect proxy for individual performance) of 8043 male Alpine ibex (Capra ibex) over the past four decades is well synchronised among eight disjunct colonies in the eastern Swiss Alps. Elevated March to May temperatures, causing premature melting of Alpine snowcover, earlier plant phenology and subsequent improvement of ibex food resources, fuelled annual horn growth. These results reveal dependency of local trophic interactions on large-scale climate dynamics, and provide evidence that declining herbivore performance is not a universal response to global warming even for high-altitude populations that are also harvested. PMID:24341995

European springtime temperature synchronises ibex horn growth across the eastern Swiss Alps.

PubMed

Büntgen, Ulf; Liebhold, Andrew; Jenny, Hannes; Mysterud, Atle; Egli, Simon; Nievergelt, Daniel; Stenseth, Nils C; Bollmann, Kurt

2014-03-01

Direct effects of climate change on animal physiology, and indirect impacts from disruption of seasonal synchrony and breakdown of trophic interactions are particularly severe in Arctic and Alpine ecosystems. Unravelling biotic from abiotic drivers, however, remains challenging because high-resolution animal population data are often limited in space and time. Here, we show that variation in annual horn growth (an indirect proxy for individual performance) of 8043 male Alpine ibex (Capra ibex) over the past four decades is well synchronised among eight disjunct colonies in the eastern Swiss Alps. Elevated March to May temperatures, causing premature melting of Alpine snowcover, earlier plant phenology and subsequent improvement of ibex food resources, fuelled annual horn growth. These results reveal dependency of local trophic interactions on large-scale climate dynamics, and provide evidence that declining herbivore performance is not a universal response to global warming even for high-altitude populations that are also harvested. © 2013 The Authors. Ecology Letters published by John Wiley & Sons Ltd and CNRS.

Sarcoptic mange breaks up bottom-up regulation of body condition in a large herbivore population.

PubMed

Carvalho, João; Granados, José E; López-Olvera, Jorge R; Cano-Manuel, Francisco Javier; Pérez, Jesús M; Fandos, Paulino; Soriguer, Ramón C; Velarde, Roser; Fonseca, Carlos; Ráez, Arian; Espinosa, José; Pettorelli, Nathalie; Serrano, Emmanuel

2015-11-06

Both parasitic load and resource availability can impact individual fitness, yet little is known about the interplay between these parameters in shaping body condition, a key determinant of fitness in wild mammals inhabiting seasonal environments. Using partial least square regressions (PLSR), we explored how temporal variation in climatic conditions, vegetation dynamics and sarcoptic mange (Sarcoptes scabiei) severity impacted body condition of 473 Iberian ibexes (Capra pyrenaica) harvested between 1995 and 2008 in the highly seasonal Alpine ecosystem of Sierra Nevada Natural Space (SNNS), southern Spain. Bottom-up regulation was found to only occur in healthy ibexes; the condition of infected ibexes was independent of primary productivity and snow cover. No link between ibex abundance and ibex body condition could be established when only considering infected individuals. The pernicious effects of mange on Iberian ibexes overcome the benefits of favorable environmental conditions. Even though the increase in primary production exerts a positive effect on the body condition of healthy ibexes, the scabietic individuals do not derive any advantage from increased resource availability. Further applied research coupled with continuous sanitary surveillance are needed to address remaining knowledge gaps associated with the transmission dynamics and management of sarcoptic mange in free-living populations.

Sperm characteristics and heterologous in vitro fertilisation capacity of Iberian ibex (Capra pyrenaica) epididymal sperm, frozen in the presence of the enzymatic antioxidant catalase.

PubMed

López-Saucedo, J; Paramio, M T; Fierro, R; Izquierdo, D; Catalá, M G; Coloma, M A; Toledano-Díaz, A; López-Sebastián, A; Santiago-Moreno, J

2014-06-01

The aim of this work was to evaluate the protective effect of catalase (CAT) on frozen/thawed ibex epididymal sperm recovered post mortem, and to detect any harmful effect this might have on sperm fertilisation capacity. Epididymal spermatozoa were diluted using a Tris-citric acid-glucose medium (TCG) composed of 3.8% Tris (w/v), 2.2% citric acid (w/v), 0.6% glucose (w/v), 5% glycerol (v/v), and 6% egg yolk (v/v). Sperm masses from the right epididymis were diluted with TCG medium, while those from the left were diluted with TCG medium supplemented with 200IU/mL CAT. Heterologous in vitro fertilisation (IVF) was used to assess the fertilisation capacity of this sperm. The addition of CAT to the extender did not improve frozen/thawed sperm variables. Moreover, a reduced fertilisation capacity was detected: sperm diluted with TCG provided 25.5% 2PN zygotes, while just 13.2% was recorded for that diluted with TCG-CAT (P<0.01). The percentage of cleaved embryos at 48hpi was higher (P<0.01) with the TCG sperm than with the TCG-CAT sperm (16.7% vs. 7.6%). The use of 200IU/mL CAT as an additive cannot, therefore, be recommended for the preservation of ibex epididymal sperm. Other antioxidants should, however, be tested in both this and related wild mountain ungulates. Copyright © 2014 Elsevier Inc. All rights reserved.

IBEX Sky Map Press Conference

NASA Image and Video Library

2009-10-14

Don Mitchell, far left, Cassini spacecraft instrument scientist, IBEX co-Investigator, Johns Hopkins University Applied Physics Laboratory in Laurel, Md., answers questions on findings made by NASA's Interstellar Boundary Explorer, IBEX, at NASA Headquarters in Washington, Thursday, Oct. 10, 2009. Mitchell is joined by IBEX mission colleagues David McComas, far right, IBEX spacecraft principal investigator and senior executive director, Space Science and Engineering Division, Southwest Research Institute in San Antonio; Eric Christian, IBEX deputy mission scientist, NASA's Goddard Space Flight Center in Greenbelt, Md.; Rosine Lallement, senior scientist at the French National Center for Scientific Research in Paris; Lindsay Bartolone, second from left, lead of Education and Public Outreach at the Adler Planetarium in Chicago. Photo Credit: (NASA/Carla Cioffi)

Influences of Mating Group Composition on the Behavioral Time-Budget of Male and Female Alpine Ibex (Capra ibex) during the Rut

PubMed Central

Tettamanti, Federico; Viblanc, Vincent A.

2014-01-01

During the rut, polygynous ungulates gather in mixed groups of individuals of different sex and age. Group social composition, which may vary on a daily basis, is likely to have strong influences on individual’s time-budget, with emerging properties at the group-level. To date, few studies have considered the influence of group composition on male and female behavioral time budget in mating groups. Focusing on a wild population of Alpine ibex, we investigated the influence of group composition (adult sex ratio, the proportion of dominant to subordinate males, and group size) on three behavioral axes obtained by Principal Components Analysis, describing male and female group time-budget. For both sexes, the first behavioral axis discerned a trade-off between grazing and standing/vigilance behavior. In females, group vigilance behavior increased with increasingly male-biased sex ratio, whereas in males, the effect of adult sex ratio on standing/vigilance behavior depended on the relative proportion of dominant males in the mating group. The second axis characterized courtship and male-male agonistic behavior in males, and moving and male-directed agonistic behavior in females. Mating group composition did not substantially influence this axis in males. However, moving and male-directed agonistic behavior increased at highly biased sex ratios (quadratic effect) in females. Finally, the third axis highlighted a trade-off between moving and lying behavior in males, and distinguished moving and female-female agonistic behavior from lying behavior in females. For males, those behaviors were influenced by a complex interaction between group size and adult sex ratio, whereas in females, moving and female-female agonistic behaviors increased in a quadratic fashion at highly biased sex ratios, and also increased with increasing group size. Our results reveal complex behavioral trade-offs depending on group composition in the Alpine ibex, and emphasize the importance of

Linking seasonal home range size with habitat selection and movement in a mountain ungulate.

PubMed

Viana, Duarte S; Granados, José Enrique; Fandos, Paulino; Pérez, Jesús M; Cano-Manuel, Francisco Javier; Burón, Daniel; Fandos, Guillermo; Aguado, María Ángeles Párraga; Figuerola, Jordi; Soriguer, Ramón C

2018-01-01

Space use by animals is determined by the interplay between movement and the environment, and is thus mediated by habitat selection, biotic interactions and intrinsic factors of moving individuals. These processes ultimately determine home range size, but their relative contributions and dynamic nature remain less explored. We investigated the role of habitat selection, movement unrelated to habitat selection and intrinsic factors related to sex in driving space use and home range size in Iberian ibex, Capra pyrenaica . We used GPS collars to track ibex across the year in two different geographical areas of Sierra Nevada, Spain, and measured habitat variables related to forage and roost availability. By using integrated step selection analysis (iSSA), we show that habitat selection was important to explain space use by ibex. As a consequence, movement was constrained by habitat selection, as observed displacement rate was shorter than expected under null selection. Selection-independent movement, selection strength and resource availability were important drivers of seasonal home range size. Both displacement rate and directional persistence had a positive relationship with home range size while accounting for habitat selection, suggesting that individual characteristics and state may also affect home range size. Ibex living at higher altitudes, where resource availability shows stronger altitudinal gradients across the year, had larger home ranges. Home range size was larger in spring and autumn, when ibex ascend and descend back, and smaller in summer and winter, when resources are more stable. Therefore, home range size decreased with resource availability. Finally, males had larger home ranges than females, which might be explained by differences in body size and reproductive behaviour. Movement, selection strength, resource availability and intrinsic factors related to sex determined home range size of Iberian ibex. Our results highlight the need to integrate

The Interstellar Boundary Explorer (IBEX) - Time to Launch!

NASA Astrophysics Data System (ADS)

McComas, David

The Interstellar Boundary Explorer (IBEX) mission is scheduled to launch in mid-July 2008, right around the time of this COSPAR meeting. IBEX will make the first global observations of the heliosphere's interaction with the interstellar medium. IBEX achieves these breakthrough observations by traveling outside of the Earth's magnetosphere in a highly elliptical orbit and taking global Energetic Neutral Atoms (ENA) images with two very large aperture single pixel ENA cameras. IBEX-Lo makes measurements in 8 contiguous energy pass bands covering from ˜10 eV to 2 keV; IBEX-Hi similarly covers from ˜300 eV to 6 keV in 6 contiguous pass bands. IBEX's high-apogee (˜50RE ) orbit enables heliospheric ENA measurements by providing viewing from far outside the earth's relatively bright magnetospheric ENA emissions. The IBEX cameras view perpendicular to the spacecraft's sun-pointed spin axis. Each six months, the spacecraft spin and progression of the sun-pointing spin axis as the Earth moves around the Sun lead naturally to global, all-sky images. IBEX is the first mission to achieve a high altitude from a standard Pegasus launch vehicle. We accomplish this by adding the propulsion from an IBEX-supplied solid rocket motor and the spacecraft's hydrazine propulsion system. Additional information on IBEX is available at www.ibex.swri.edu. This talk, on behalf of the IBEX science and engineering teams, will summarize the IBEX science and mission and will provide an up-to-the-minute update on the status of the mission, including any new information on the launch and commissioning status.

Prevalence of Toxoplasma gondii and Neosport caninum antibodies in Spanish ibex (Capra pryenaica hispanica)

USDA-ARS?s Scientific Manuscript database

Wild felids are considered important in maintaining the sylvatic cycle of Toxoplasma gondii. Although, T. gondii antibodies have been reported in several species of wild felids, little is known of the epidemiology and risk factors associated with T. gondii infection in wild cats. The Iberian lynx (L...

Brucella melitensis in France: Persistence in Wildlife and Probable Spillover from Alpine Ibex to Domestic Animals

PubMed Central

Mick, Virginie; Le Carrou, Gilles; Corde, Yannick; Game, Yvette; Jay, Maryne; Garin-Bastuji, Bruno

2014-01-01

Bovine brucellosis is a major zoonosis, mainly caused by Brucella abortus, more rarely by Brucella melitensis. France has been bovine brucellosis officially-free since 2005 with no cases reported in domestic/wild ruminants since 2003. In 2012, bovine and autochthonous human cases due to B. melitensis biovar 3 (Bmel3) occurred in the French Alps. Epidemiological investigations implemented in wild and domestic ruminants evidenced a high seroprevalence (>45%) in Alpine ibex (Capra ibex); no cases were disclosed in other domestic or wild ruminants, except for one isolated case in a chamois (Rupicapra rupicapra). These results raised the question of a possible persistence/emergence of Brucella in wildlife. The purpose of this study was to assess genetic relationships among the Bmel3 strains historically isolated in humans, domestic and wild ruminants in Southeastern France, over two decades, by the MLVA-panel2B assay, and to propose a possible explanation for the origin of the recent bovine and human infections. Indeed, this genotyping strategy proved to be efficient for this microepidemiological investigation using an interpretation cut-off established for a fine-scale setting. The isolates, from the 2012 domestic/human outbreak harbored an identical genotype, confirming a recent and direct contamination from cattle to human. Interestingly, they clustered not only with isolates from wildlife in 2012, but also with local historical domestic isolates, in particular with the 1999 last bovine case in the same massif. Altogether, our results suggest that the recent bovine outbreak could have originated from the Alpine ibex population. This is the first report of a B. melitensis spillover from wildlife to domestic ruminants and the sustainability of the infection in Alpine ibex. However, this wild population, reintroduced in the 1970s in an almost closed massif, might be considered as a semi-domestic free-ranging herd. Anthropogenic factors could therefore account with the

The IBEX Flight Segment

NASA Astrophysics Data System (ADS)

Scherrer, J.; Carrico, J.; Crock, J.; Cross, W.; Delossantos, A.; Dunn, A.; Dunn, G.; Epperly, M.; Fields, B.; Fowler, E.; Gaio, T.; Gerhardus, J.; Grossman, W.; Hanley, J.; Hautamaki, B.; Hawes, D.; Holemans, W.; Kinaman, S.; Kirn, S.; Loeffler, C.; McComas, D. J.; Osovets, A.; Perry, T.; Peterson, M.; Phillips, M.; Pope, S.; Rahal, G.; Tapley, M.; Tyler, R.; Ungar, B.; Walter, E.; Wesley, S.; Wiegand, T.

2009-08-01

IBEX provides the observations needed for detailed modeling and in-depth understanding of the interstellar interaction (McComas et al. in Physics of the Outer Heliosphere, Third Annual IGPP Conference, pp. 162-181, 2004; Space Sci. Rev., 2009a, this issue). From mission design to launch and acquisition, this goal drove all flight system development. This paper describes the management, design, testing and integration of IBEX’s flight system, which successfully launched from Kwajalein Atoll on October 19, 2008. The payload is supported by a simple, Sun-pointing, spin-stabilized spacecraft with no deployables. The spacecraft bus consists of the following subsystems: attitude control, command and data handling, electrical power, hydrazine propulsion, RF, thermal, and structures. A novel 3-step orbit approach was employed to put IBEX in its highly elliptical, 8-day final orbit using a Solid Rocket Motor, which provided large delta-V after IBEX separated from the Pegasus launch vehicle; an adapter cone, which interfaced between the SRM and Pegasus; Motorized Lightbands, which performed separation from the Pegasus, ejection of the adapter cone, and separation of the spent SRM from the spacecraft; a ShockRing isolation system to lower expected launch loads; and the onboard Hydrazine Propulsion System. After orbit raising, IBEX transitioned from commissioning to nominal operations and science acquisition. At every phase of development, the Systems Engineering and Mission Assurance teams supervised the design, testing and integration of all IBEX flight elements.

External validation of the CAPRA-S score to predict biochemical recurrence, metastasis and mortality after radical prostatectomy in a European cohort.

PubMed

Tilki, Derya; Mandel, Philipp; Schlomm, Thorsten; Chun, Felix K-H; Tennstedt, Pierre; Pehrke, Dirk; Haese, Alexander; Huland, Hartwig; Graefen, Markus; Salomon, Georg

2015-06-01

The CAPRA-S score predicts prostate cancer recurrence based on pathological information from radical prostatectomy. To our knowledge CAPRA-S has never been externally validated in a European cohort. We independently validated CAPRA-S in a single institution European database. The study cohort comprised 14,532 patients treated with radical prostatectomy between January 1992 and August 2012. Prediction of biochemical recurrence, metastasis and cancer specific mortality by CAPRA-S was assessed by Kaplan-Meier analysis and the c-index. CAPRA-S performance to predict biochemical recurrence was evaluated by calibration plot and decision curve analysis. Median followup was 50.8 months (IQR 25.0-96.0). Biochemical recurrence developed in 20.3% of men at a median of 21.2 months (IQR 7.7-44.9). When stratifying patients by CAPRA-S risk group, estimated 5-year biochemical recurrence-free survival was 91.4%, 70.4% and 29.3% in the low, intermediate and high risk groups, respectively. The CAPRA-S c-index to predict biochemical recurrence, metastasis and cancer specific mortality was 0.80, 0.85 and 0.88, respectively. Metastasis developed in 417 men and 196 men died of prostate cancer. The CAPRA-S score was accurate when applied in a European study cohort. It predicted biochemical recurrence, metastasis and cancer specific mortality after radical prostatectomy with a c-index of greater than 0.80. The score can be valuable in regard to decision making for adjuvant therapy. Copyright © 2015. Published by Elsevier Inc.

What shapes fitness costs of reproduction in long-lived iteroparous species? A case study on the Alpine ibex.

PubMed

Garnier, Alexandre; Gaillard, Jean-Michel; Gauthier, Dominique; Besnard, Aurélien

2016-01-01

The fitness costs of reproduction can be masked by individual differences, and may only become apparent during adverse environmental conditions. Individual differences, however, are usually assessed by reproductive success, so how fitness costs are influenced by the interplay between the environmental context and overall individual differences requires further investigation. Here, we evaluated fitness costs of reproduction based on 15 yr of monitoring of individual Alpine ibex (Capra ibex) during a period when the population was affected by a severe disease outbreak (pneumonia). We quantified fitness costs using a novel multi-event capture-mark-recapture (CMR) modeling approach that accounted for uncertainty in reproductive status to estimate the survival and reproductive success of female ibex while also accounting for overall individual heterogeneity using mixture models. Our results show that the ability of females to reproduce was highly heterogeneous. In particular, one group including 76% of females had a much higher probability of giving birth annually (between 0.66 and 0.77, depending on the previous reproductive status) than females of the second group (24% of females, between 0 and 0.05 probability of giving birth annually). Low reproductive costs in terms of future reproduction occurred and were independent of the pneumonia outbreak. There was no survival cost of reproduction either before or after the epizootic, but the cost was high during the epizootic. Our findings indicate that adverse environmental conditions, such as disease outbreaks, may lead to survival costs of reproduction in long-lived species and select against females that have a high reproductive effort. Thereby, the occurrence of adverse conditions increases the diversity of reproductive tactics within a population.

Assessing the Impact of Capture on Wild Animals: The Case Study of Chemical Immobilisation on Alpine Ibex.

PubMed

Brivio, Francesca; Grignolio, Stefano; Sica, Nicoletta; Cerise, Stefano; Bassano, Bruno

2015-01-01

The importance of capturing wild animals for research and conservation projects is widely shared. As this activity continues to become more common, the need to assess its negative effects increases so as to ensure ethical standards and the validity of research results. Increasing evidence has revealed that indirect (physiological and behavioural) effects of capture are as important as direct risks (death or injury) and that different capture methodologies can cause heterogeneous effects. We investigated the influence of chemical immobilisation on Alpine ibex (Capra ibex): during the days following the capture we collected data on spatial behaviour, activity levels of both males and females, and male hormone levels. Moreover, we recorded the reproductive status of each marked female during the breeding seasons of 15 years. Then, by several a priori models we investigated the effects of the capture taking into account biological factors and changes in environmental conditions. Our results showed that chemical immobilisation did not affect either spatial behaviour (for both males and females) or male hormone levels, though both sexes showed reduced activity levels up to two days after the capture. The capture did not significantly affect the likelihood for a female to give birth in the following summer. Our findings highlighted the scarce impact of chemical immobilisation on ibex biology, as we detected alteration of activity levels only immediately after the capture if compared to the following days (i.e., baseline situation). Hence, the comparison of our findings with previous research showed that our methodology is one of the less invasive procedures to capture large mammals. Nonetheless, in areas characterised by high predator density, we suggest that animals released be carefully monitored for some hours after the capture. Moreover, researchers should avoid considering data collected during the first days after the manipulation in order to avoid biased

Assessing the Impact of Capture on Wild Animals: The Case Study of Chemical Immobilisation on Alpine Ibex

PubMed Central

Brivio, Francesca; Grignolio, Stefano; Sica, Nicoletta; Cerise, Stefano; Bassano, Bruno

2015-01-01

The importance of capturing wild animals for research and conservation projects is widely shared. As this activity continues to become more common, the need to assess its negative effects increases so as to ensure ethical standards and the validity of research results. Increasing evidence has revealed that indirect (physiological and behavioural) effects of capture are as important as direct risks (death or injury) and that different capture methodologies can cause heterogeneous effects. We investigated the influence of chemical immobilisation on Alpine ibex (Capra ibex): during the days following the capture we collected data on spatial behaviour, activity levels of both males and females, and male hormone levels. Moreover, we recorded the reproductive status of each marked female during the breeding seasons of 15 years. Then, by several a priori models we investigated the effects of the capture taking into account biological factors and changes in environmental conditions. Our results showed that chemical immobilisation did not affect either spatial behaviour (for both males and females) or male hormone levels, though both sexes showed reduced activity levels up to two days after the capture. The capture did not significantly affect the likelihood for a female to give birth in the following summer. Our findings highlighted the scarce impact of chemical immobilisation on ibex biology, as we detected alteration of activity levels only immediately after the capture if compared to the following days (i.e., baseline situation). Hence, the comparison of our findings with previous research showed that our methodology is one of the less invasive procedures to capture large mammals. Nonetheless, in areas characterised by high predator density, we suggest that animals released be carefully monitored for some hours after the capture. Moreover, researchers should avoid considering data collected during the first days after the manipulation in order to avoid biased

First Results from the Interstellar Boundary Explorer (IBEX) Mission

NASA Astrophysics Data System (ADS)

McComas, David J.

2010-03-01

The Interstellar Boundary Explorer (IBEX) is a Small Explorer mission designed to study the global interaction between the heliosphere and the local interstellar medium. IBEX does this by measuring energetic neutral atoms (ENAs) created by both solar wind ions and pickup ions in the solar wind when they charge exchange with cold interstellar neutrals drifting in from the interstellar medium. Because the ENAs are not magnetically confined, some of them propagate back into the inner heliosphere, where IBEX can detect them. IBEX was launched October 19th 2008, using a new launch technique that was also developed as a part of the IBEX project. The first scientific observations from IBEX were of ENAs coming from the Moon-these represented the first ever lunar ENA observations from any spacecraft and provided important information about the universal physical processes of backscatter and neutralization from complex planetary surfaces like the lunar regolith. Since then, IBEX has been collecting its first all-sky maps of heliospheric ENAs and initial direct, in situ observations of interstellar H, He, and O. At the time of this writing, these observations have been submitted and are under review for a special IBEX section of Science magazine nominally scheduled to be published in October 2009.

A Look at Six Years of IBEX

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2015-10-01

The objective of the Interstellar Boundary Explorer, or IBEX, is to study the interaction between the solar wind and the interstellar medium (ISM) at the outer boundary of our solar system. In a special issue of the Astrophysical Journal Supplement Series, a set of 14 papers presents some of the most recent scientific results to come from the first six years of IBEX data.The Heliosphere and IBEXThe IBEX spacecraft, launched in October 2008. [NASA]As the solar wind streams outward, it blows a bubble into the ISM known as the heliosphere. The outer boundary of the heliosphere, where the solar wind is no longer able to push the ISM out of the way, marks the edge of our solar system. Wed like to understand the composition and properties of both the heliosphere and the local interstellar environment, as well as the processes at work in the interstellar space around our Sun.How do we learn about these things? One approach is to send spacecraft to the edge of the heliosphere to make measurements, such as Voyagers 1 and 2. But these spacecraft are only able to measure properties at their specific locations and since the heliosphere doesnt appear to be symmetric, this is a major limitation. This is where IBEX comes in.IBEXs orbit around the Earth, at various stages in the Earths orbit around the Sun. IBEX makes its observations while outside of the Earths magnetosphere (purple shaded region). [SwRI/IBEX Team]IBEX is a spacecraft on a highly elliptical orbit around Earth. Its orbit takes it outside of the Earths magnetosphere, where its able to detect neutral atoms of varying energies that have traveled from the outer edges of our solar system. IBEXs observations are therefore of particles rather than light; the spacecraft detects the directions and energies of roughly 600 particles per day. This data has provided us with a full 3D view of the outer boundary of the heliosphere.IBEXs detections rely on two types of particles: 1) energetic neutral atoms, which are produced by

Fertilization capacity of cryopreserved Iberian ibex epididymal sperm in a heterologous in vitro fertilization assay.

PubMed

López-Saucedo, J; Santiago-Moreno, J; Fierro, R; Izquierdo, D; Coloma, M A; Catalá, M G; Jiménez, I; Paramio, M T

2015-02-01

In vitro fertilization (IVF) can be used to assess the fertilization capacity of sperm. Heterologous IVF may be useful when assessing that of wild animals as it is often difficult to obtain adequate numbers of naturally corresponding oocytes. The aim of the present study was to assess the fertilization capacity of frozen-thawed ibex epididymal spermatozoa via heterologous IVF involving the oocytes of prepubertal domestic goats. The effect on fertilization and embryo development of adding oestrous sheep serum (ESS) to the fertilization medium was also examined. Cumulus-oocyte complexes (COCs) were matured in TCM-199 for 24-27 h at 38.5°C in a 5% CO2 in air atmosphere. Frozen-thawed epididymal spermatozoa were selected by density gradient centrifugation. After maturation, the oocytes were co-incubated with spermatozoa in synthetic oviductal fluid (SOF) with different concentrations of ESS: SOF-C (0%), SOF-2 (2%) and SOF-20 (20%). At 17 h post-insemination (hpi), zygotes with one female and one male pronucleus (2PN) were categorised as normal; zygotes with 3PN were recorded as polyspermic, and oocytes with 1PN as asynchronous. Cleavage and blastocyst development were assessed at 48 and 168 hpi respectively. The percentage of zygotes with 2PN was higher in the SOF-2 than in the SOF-20 treatment group (27.7% versus 2.9% P < 0.05). The percentage of blastocysts formed with the SOF-C, SOF-2 and SOF-20 treatments were 1.1%, 7.5% and 0% respectively. These results show that the presence of 2% ESS achieves better results than the use of no serum or the standard 20% concentration. Heterologous IVF may be an effective method for predicting the fertilization capacity of ibex spermatozoa, and therefore perhaps that of other wild mountain ungulates.

IBEX Mission update: New discoveries and a new orbit

NASA Astrophysics Data System (ADS)

McComas, D. J.; IBEX Science Team

2011-12-01

The Interstellar Boundary Explorer (IBEX) mission has been remotely observing the global interaction of our heliosphere with the local interstellar medium for over two and a half years. Initially, IBEX generated the first all-sky maps of Energetic Neutral Atoms (ENAs) emanating in from the boundaries of our heliosphere over the energy range from ~0.1-6 keV. Using these observations, the IBEX team discovered a smoothly varying, globally distributed ENA flux overlaid by a narrow "ribbon" of significantly enhanced ENA emissions. Since the initial publications of these results in a special issue of Science magazine (November 2009), IBEX has completed four more energy-resolved sets of sky maps and discovered small but important time variations in the interaction, separated the ribbon from globally distributed ENA fluxes, measured the energy spectral shape and inferred ion source temperatures, and carried out many other observational and theoretical studies. In addition, IBEX made the first observations of ENAs produced by backscatter and neutralization of the solar wind from the lunar regolith and provided the first energy and angle resolved ENA images of the subsolar magnetosheath and magnetospheric cusps and plasma sheet. Most recently, direct IBEX observations of Interstellar Neutral (ISN) He show that the speed and direction (the motion of the heliosphere with respect to the interstellar medium) is different than that thought from prior Ulysses observations. These observations also show evidence for a previously unknown and unanticipated secondary population of Helium. In addition, IBEX is providing the first direct quantitative measurements of the ISN H parameters and the first direct measurements of interstellar Ne and the interstellar Neon/Oxygen abundance ratio; this ratio is significantly different than the solar abundance ratio. IBEX was recently maneuvered into a unique, long-term stable orbit and has several decades worth of fuel for routine operations. Thus

Molecular identification and phylogenetic study of Demodex caprae.

PubMed

Zhao, Ya-E; Cheng, Juan; Hu, Li; Ma, Jun-Xian

2014-10-01

The DNA barcode has been widely used in species identification and phylogenetic analysis since 2003, but there have been no reports in Demodex. In this study, to obtain an appropriate DNA barcode for Demodex, molecular identification of Demodex caprae based on mitochondrial cox1 was conducted. Firstly, individual adults and eggs of D. caprae were obtained for genomic DNA (gDNA) extraction; Secondly, mitochondrial cox1 fragment was amplified, cloned, and sequenced; Thirdly, cox1 fragments of D. caprae were aligned with those of other Demodex retrieved from GenBank; Finally, the intra- and inter-specific divergences were computed and the phylogenetic trees were reconstructed to analyze phylogenetic relationship in Demodex. Results obtained from seven 429-bp fragments of D. caprae showed that sequence identities were above 99.1% among three adults and four eggs. The intraspecific divergences in D. caprae, Demodex folliculorum, Demodex brevis, and Demodex canis were 0.0-0.9, 0.5-0.9, 0.0-0.2, and 0.0-0.5%, respectively, while the interspecific divergences between D. caprae and D. folliculorum, D. canis, and D. brevis were 20.3-20.9, 21.8-23.0, and 25.0-25.3, respectively. The interspecific divergences were 10 times higher than intraspecific ones, indicating considerable barcoding gap. Furthermore, the phylogenetic trees showed that four Demodex species gathered separately, representing independent species; and Demodex folliculorum gathered with canine Demodex, D. caprae, and D. brevis in sequence. In conclusion, the selected 429-bp mitochondrial cox1 gene is an appropriate DNA barcode for molecular classification, identification, and phylogenetic analysis of Demodex. D. caprae is an independent species and D. folliculorum is closer to D. canis than to D. caprae or D. brevis.

IBEX: an open infrastructure software platform to facilitate collaborative work in radiomics.

PubMed

Zhang, Lifei; Fried, David V; Fave, Xenia J; Hunter, Luke A; Yang, Jinzhong; Court, Laurence E

2015-03-01

Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (IBEX), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. The IBEX software package was developed using the MATLAB and c/c++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, IBEX is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, IBEX provides an integrated development environment on top of MATLAB and c/c++, so users are not limited to its built-in functions. In the IBEX developer studio, users can plug in, debug, and test new algorithms, extending IBEX's functionality. IBEX also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the IBEX workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between institutions

The interstellar boundary explorer (IBEX): Update at the end of phase B

NASA Astrophysics Data System (ADS)

McComas, D. J.; Allegrini, F.; Bartolone, L.; Bochsler, P.; Bzowski, M.; Collier, M.; Fahr, H.; Fichtner, H.; Frisch, P.; Funsten, H.; Fuselier, Steve; Gloeckler, G.; Gruntman, M.; Izmodenov, V.; Knappenberger, P.; Lee, M.; Livi, S.; Mitchell, D.; Möbius, E.; Moore, T.; Pope, S.; Reisenfeld, D.; Roelof, E.; Runge, H.; Scherrer, J.; Schwadron, N.; Tyler, R.; Wieser, M.; Witte, M.; Wurz, P.; Zank, G.

2006-09-01

The Interstellar Boundary Explorer (IBEX) mission will make the first global observations of the heliosphere's interaction with the interstellar medium. IBEX achieves these breakthrough observations by traveling outside of the Earth's magnetosphere in a highly elliptical orbit and taking global Energetic Neutral Atoms (ENA) images over energies from ~10 eV to 6 keV. IBEX's high-apogee (~50 RE) orbit enables heliospheric ENA measurements by providing viewing from far above the Earth's relatively bright magnetospheric ENA emissions. This high energy orbit is achieved from a Pegasus XL launch vehicle by adding the propulsion from an IBEX-supplied solid rocket motor and the spacecraft's hydrazine propulsion system. IBEX carries two very large-aperture, single-pixel ENA cameras that view perpendicular to the spacecraft's Sun-pointed spin axis. Each six months, the continuous spinning of the spacecraft and periodic re-pointing to maintain the sun-pointing spin axis naturally lead to global, all-sky images. Over the course of our NASA Phase B program, the IBEX team optimized the designs of all subsystems. In this paper we summarize several significant advances in both IBEX sensors, our expected signal to noise (and background), and our groundbreaking approach to achieve a very high-altitude orbit from a Pegasus launch vehicle for the first time. IBEX is in full scale development and on track for launch in June of 2008.

Enhanced Resolution Maps of Energetic Neutral Atoms from IBEX

NASA Astrophysics Data System (ADS)

Teodoro, L. A.; Elphic, R. C.; Janzen, P.; Reisenfeld, D.; Wilson, J. T.

2017-12-01

The discovery by the Interstellar Boundary Explorer (IBEX) of a "Ribbon" in the measurements of Energetic Neutral Particles (ENA) was a major surprise that lead to the re-thinking of the Physics underpinning the heliosphere-intergalactic medium boundary dynamics. Several physical models have been proposed and tested in their ability to mimic the IBEX observations. Some of the ENA IBEX's include the following features: 1) The presence of fine structure within the ribbon suggests that the physical properties of it exhibit small-scale spacial structure and possibly rapid small-scale variations. 2) The ribbon is a fairly narrow feature at low energies and broadens with increasing energy;The IBEX detectors were designed to maximize count rate by incorporating wide angular and broad energy acceptance. Thus far, the existing mapping software used by the IBEX Science Operation Center has not been design with the "Ribbon" ( 20o wide) in mind: the current generation of maps are binned in 6o longitude pixels by 6o latitude pixels (so the pixels are all of the same size in angle and are quite "blocky"). Furthermore, the instrumental point spread function has not been deconvolved, making any potential narrow features broader than they are. An improvement in the spatial resolution of the IBEX maps would foster a better understanding of the Ribbon and its substructure, and thus reply to some of the basic and profound questions related to its origin, the nature of the outer boundaries of the our solar system and the surrounding interstellar Galactic medium.Here we report on the application of the Bayesian image reconstruction algorithm "Speedy Pixons" to the ENA data with the aim to sharpen the ENA IBEX maps. A preliminary application allow us to conclude that: The peaks in the count rate do appear to be more enhanced in the reconstruction; The reconstruction is clearly denoised; The "Ribbon" is better defined in the reconstruction. We are currently studying the implications of

REVISITING THE ISN FLOW PARAMETERS, USING A VARIABLE IBEX POINTING STRATEGY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leonard, T. W.; Möbius, E.; Heirtzler, D.

2015-05-01

The Interstellar Boundary Explorer (IBEX) has observed the interstellar neutral (ISN) gas flow over the past 6 yr during winter/spring when the Earth’s motion opposes the ISN flow. Since IBEX observes the interstellar atom trajectories near their perihelion, we can use an analytical model based upon orbital mechanics to determine the interstellar parameters. Interstellar flow latitude, velocity, and temperature are coupled to the flow longitude and are restricted by the IBEX observations to a narrow tube in this parameter space. In our original analysis we found that pointing the spacecraft spin axis slightly out of the ecliptic plane significantly influencesmore » the ISN flow vector determination. Introducing the spacecraft spin axis tilt into the analytical model has shown that IBEX observations with various spin axis tilt orientations can substantially reduce the range of acceptable solutions to the ISN flow parameters as a function of flow longitude. The IBEX operations team pointed the IBEX spin axis almost exactly within the ecliptic plane during the 2012–2014 seasons, and about 5° below the ecliptic for half of the 2014 season. In its current implementation the analytical model describes the ISN flow most precisely for the spin axis orientation exactly in the ecliptic. This analysis refines the derived ISN flow parameters with a possible reconciliation between velocity vectors found with IBEX and Ulysses, resulting in a flow longitude λ{sub ∞} = 74.°5 ± 1.°7 and latitude β{sub ∞} = −5.°2 ± 0.°3, but at a substantially higher ISN temperature than previously reported.« less

Update on IBEX and the outer boundary of the space radiation environment

NASA Astrophysics Data System (ADS)

McComas, D. J.; IBEX Science Team

2012-11-01

The Interstellar Boundary Explorer (IBEX) mission has been remotely observing the global interaction of our heliosphere with the local interstellar medium for over three years. Initially, IBEX generated the first all-sky maps of Energetic Neutral Atoms (ENAs) emanating in from the boundaries of our heliosphere over the energy range from ˜0.1-6 keV. Using these observations, the IBEX team discovered a smoothly varying, globally distributed ENA flux overlaid by a narrow "ribbon" of significantly enhanced ENA emissions. Since the initial publication of these results in a special issue of Science magazine (November 2009), IBEX has completed five more energy-resolved sets of sky maps and discovered small but important time variations in the interaction, separated the ribbon from globally distributed ENA fluxes, measured the energy spectral shape and inferred ion source temperatures, and carried out many other observational and theoretical studies of the outer heliosphere. In a second major area of observations - direct measurements of Interstellar Neutral (ISN) atoms - just published, IBEX observations of ISN He atoms show that the speed and direction (the motion of the heliosphere with respect to the interstellar medium) is slower and from a somewhat different direction than that thought from prior Ulysses observations. These observations also show evidence for a previously unknown and unanticipated secondary population of Helium. In addition, IBEX is providing the first direct quantitative measurements of the ISN H parameters and the first direct measurements of interstellar Ne and the interstellar Neon/Oxygen abundance ratio; this ratio is significantly different than the solar abundance ratio. Finally, IBEX was recently maneuvered into a unique, long-term stable orbit, which has a very low radiation environment and requires no orbit maintenance. Thus, IBEX will likely continue to provide revolutionary observations of the outer heliosphere and local interstellar

ibex: An open infrastructure software platform to facilitate collaborative work in radiomics

PubMed Central

Zhang, Lifei; Fried, David V.; Fave, Xenia J.; Hunter, Luke A.; Court, Laurence E.

2015-01-01

Purpose: Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (ibex), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. Methods: The ibex software package was developed using the matlab and c/c++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, ibex is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, ibex provides an integrated development environment on top of matlab and c/c++, so users are not limited to its built-in functions. In the ibex developer studio, users can plug in, debug, and test new algorithms, extending ibex’s functionality. ibex also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the ibex workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between

Mycobacterium caprae Infection in Livestock and Wildlife, Spain

PubMed Central

Rodríguez, Sabrina; Bezos, Javier; Romero, Beatriz; de Juan, Lucía; Álvarez, Julio; Castellanos, Elena; Moya, Nuria; Lozano, Francisco; Javed, M. Tariq; Sáez-Llorente, José L.; Liébana, Ernesto; Mateos, Ana; Domínguez, Lucas; Tuberculosis, Monitoring of Animal

2011-01-01

Mycobacterium caprae is a pathogen that can infect animals and humans. To better understand the epidemiology of M. caprae, we spoligotyped 791 animal isolates. Results suggest infection is widespread in Spain, affecting 6 domestic and wild animal species. The epidemiology is driven by infections in caprids, although the organism has emerged in cattle. PMID:21392452

Editorial: Interstellar Boundary Explorer (IBEX): Direct Sampling of the Interstellar Medium

NASA Astrophysics Data System (ADS)

McComas, D. J.

2012-02-01

This special supplement issue of the Astrophysical Journal comprises six coordinated papers that provide the first detailed analyses of the direct sampling of interstellar neutral atoms by the Interstellar Boundary Explorer (IBEX). Interstellar atoms are the detritus of older stars—their stellar winds, novae, and supernovae—spread across the galaxy, which fill the vast interstellar space between the stars. The very local interstellar medium around the Sun is filled with both ionized and neutral atoms with approximately equal numbers, and occasional ionization, charge exchange, and recombination makes them a single interacting material over large distances. IBEX (McComas et al. 2009a) is a NASA Small Explorer mission with the sole, focused science objective to discover the global interaction between the solar wind and the interstellar medium; this objective has primarily been achieved by taking the first global energetic neutral atom (ENA) images, which provide detailed ENA fluxes and energy spectra over all look directions in space. IBEX was launched 2008 October 19 and subsequently maneuvered into a high-altitude, highly elliptical (~15,000 × 300,000 km), roughly week-long orbit. The payload comprises two very high sensitivity, single-pixel ENA cameras: IBEX-Hi (Funsten et al. 2009a), which measures ENAs from ~300 eV to 6 keV, and IBEX-Lo (Fuselier et al. 2009a), which measures ENAs from ~10 eV to 2 keV. The initial IBEX ENA results were published together in a special issue of Science magazine (McComas et al. 2009b; Funsten et al. 2009b; Fuselier et al. 2009b; Schwadron et al. 2009). Since then there have been numerous additional studies of the IBEX ENA observations of the heliosphere, as well as ENAs from the Moon and Earth's magnetosphere (see recent review by McComas et al. 2011 and references therein). Prior to IBEX, the only interstellar neutral atoms to be directly sampled were He, observed by the Ulysses spacecraft a decade ago (Witte et al. 1996

Phylogenetic analysis of Demodex caprae based on mitochondrial 16S rDNA sequence.

PubMed

Zhao, Ya-E; Hu, Li; Ma, Jun-Xian

2013-11-01

Demodex caprae infests the hair follicles and sebaceous glands of goats worldwide, which not only seriously impairs goat farming, but also causes a big economic loss. However, there are few reports on the DNA level of D. caprae. To reveal the taxonomic position of D. caprae within the genus Demodex, the present study conducted phylogenetic analysis of D. caprae based on mt16S rDNA sequence data. D. caprae adults and eggs were obtained from a skin nodule of the goat suffering demodicidosis. The mt16S rDNA sequences of individual mite were amplified using specific primers, and then cloned, sequenced, and aligned. The sequence divergence, genetic distance, and transition/transversion rate were computed, and the phylogenetic trees in Demodex were reconstructed. Results revealed the 339-bp partial sequences of six D. caprae isolates were obtained, and the sequence identity was 100% among isolates. The pairwise divergences between D. caprae and Demodex canis or Demodex folliculorum or Demodex brevis were 22.2-24.0%, 24.0-24.9%, and 22.9-23.2%, respectively. The corresponding average genetic distances were 2.840, 2.926, and 2.665, and the average transition/transversion rates were 0.70, 0.55, and 0.54, respectively. The divergences, genetic distances, and transition/transversion rates of D. caprae versus the other three species all reached interspecies level. The five phylogenetic trees all presented that D. caprae clustered with D. brevis first, and then with D. canis, D. folliculorum, and Demodex injai in sequence. In conclusion, D. caprae is an independent species, and it is closer to D. brevis than to D. canis, D. folliculorum, or D. injai.

What We've Learned from IBEX ENA Imaging of the Heliosheath

NASA Astrophysics Data System (ADS)

Zirnstein, E.

2017-12-01

The Interstellar Boundary Explorer (IBEX) is an Earth-orbiting spacecraft equipped with two single-pixel cameras that detect neutral atoms produced by the interaction of the solar wind (SW) with the very local interstellar medium (VLISM), as well as neutral atoms flowing in from the VLISM itself. Since its launch in 2009, IBEX has provided us with over half a solar cycle of measurements of energetic neutral atom (ENA) fluxes produced in the heliosphere. In particular, a large number of these ENAs originate in the inner heliosheath, a region of nearly incompressible SW plasma that is slowed, compressed, and heated at the termination shock. As the heated SW plasma flows through the heliosheath and down the heliotail, charge-exchange with cold neutral atoms from the VLISM generates ENAs that travel on ballistic trajectories. Some of these ENAs travel to Earth and are detected by IBEX. IBEX all-sky observations of these ENAs show a unique energy and spatial dependence, revealing the structural and plasma properties of the heliosheath. One of the prime scientific objectives of the Interstellar Mapping and Acceleration Probe (IMAP) mission is to understand the SW-VLISM interaction, including the properties of the heliosheath and heliotail. This talk will review key IBEX observations of the inner heliosheath environment, the way they have shaped our understanding of the SW-VLISM interaction, and their implications for the upcoming IMAP mission.

Simulating the Compton-Getting effect for hydrogen flux measurements: Implications for IBEX-Hi and -Lo observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; Heerikhuisen, J.; McComas, D. J.

The Interstellar Boundary EXplorer (IBEX), launched in 2008 October, has improved our understanding of the solar wind-local interstellar medium interaction through its detection of neutral atoms, particularly that of hydrogen (H). IBEX is able to create full maps of the sky in six-month intervals as the Earth orbits the Sun, detecting H with energies between ∼0.01 and 6 keV. Due to the relative motion of IBEX to the solar inertial frame, measurements made in the spacecraft frame introduce a Compton-Getting (CG) effect, complicating measurements at the lowest energies. In this paper we provide results from a numerical simulation that calculatesmore » fluxes of H atoms at 1 AU in the inertial and spacecraft frames (both ram and anti-ram), at energies relevant to IBEX-Hi and -Lo. We show theory behind the numerical simulations, applying a simple frame transformation to derived flux equations that provides a straightforward way to simulate fluxes in the spacecraft frame. We then show results of H energetic neutral atom fluxes simulated at IBEX-Hi energy passbands 2-6 in all frames, comparing with IBEX-Hi data along selected directions, and also show results simulated at energies relevant to IBEX-Lo. Although simulations at IBEX-Hi energies agree reasonably well with the CG correction method used for IBEX-Hi data, we demonstrate the importance of properly modeling low energy H fluxes due to inherent complexities involved with measurements made in moving frames, as well as dynamic radiation pressure effects close to the Sun.« less

Uniting ecological and genetic data for the conservation of wild ibex

Treesearch

M. K. Schwartz

2009-01-01

There are few taxa more endangered than the Ethiopian Walia ibex. This wild mountain goat inhabits the Simen Mountains of Ethiopia and is known for its enormous backwards curving horns that exceed a meter in length on some males. Historically, hunting and habitat degradation endangered this ibex's persistence. Now this national symbol of Ethiopia is threatened by...

Molecular characterisation of Mycobacterium caprae strains isolated in Poland.

PubMed

Krajewska-Wędzina, Monika; Kozińska, Monika; Orłowska, Blanka; Weiner, Marcin; Szulowski, Krzysztof; Augustynowicz-Kopeć, Ewa; Anusz, Krzysztof; Smith, Noel H

2018-03-10

Bovine tuberculosis (bovine TB, bTB) is caused by bovine bacilli: Mycobacterium bovis and M caprae The studies conducted in Poland, in the National Bovine Tuberculosis Reference Laboratory in the Department of Microbiology of the National Veterinary Research Institute in Pulawy, show that animal tuberculosis in Poland is also caused by M caprae We here describe the identification and genotypic assessment of 52 isolates of M caprae obtained from Polish cattle and wild animals over the last five years. We show that strains isolated from bison have significant genotypic diversity and are distinct compared with the genotypes of strains isolated from cattle. Similarly, isolates from cattle herds can be highly genotypically variable. Formal designation of the members of the Mycobacterium tuberculosis complex is controversial in Poland; there is a gap in veterinary legislation with regard to bTB and no explicit mention of M caprae causing tuberculosis in animal. © British Veterinary Association (unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Heliospheric Neutral Atom Spectra Between 0.01 and 6 keV fom IBEX

NASA Technical Reports Server (NTRS)

Fuselier, S. A.; Allegrini, F.; Bzowski, M.; Funsten, H. O.; Ghielmetti, A. G.; Gloeckler, G.; Heirtzler, D.; Janzen, P.; Kubiak, M.; Kucharek, H.;

Seven Years of Imaging the Global Heliosphere with IBEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

McComas, D. J.; Zirnstein, E. J.; Bzowski, M.

2017-04-01

The Interstellar Boundary Explorer ( IBEX ) has now operated in space for 7 years and returned nearly continuous observations that have led to scientific discoveries and reshaped our entire understanding of the outer heliosphere and its interaction with the local interstellar medium. Here we extend prior work, adding the 2014–2015 data for the first time, and examine, validate, initially analyze, and provide a complete 7-year set of Energetic Neutral Atom (ENA) observations from ∼0.1 to 6 keV. The data, maps, and documentation provided here represent the 10th major release of IBEX data and include improvements to various prior correctionsmore » to provide the citable reference for the current version of IBEX data. We are now able to study time variations in the outer heliosphere and interstellar interaction over more than half a solar cycle. We find that the Ribbon has evolved differently than the globally distributed flux (GDF), with a leveling off and partial recovery of ENAs from the GDF, owing to solar wind output flattening and recovery. The Ribbon has now also lost its latitudinal ordering, which reflects the breakdown of solar minimum solar wind conditions and exhibits a greater time delay than for the surrounding GDF. Together, the IBEX observations strongly support a secondary ENA source for the Ribbon, and we suggest that this be adopted as the nominal explanation of the Ribbon going forward.« less

International Border Electronic Clearance -- IBEX : evaluation report

DOT National Transportation Integrated Search

1998-07-01

The International Border Electronic Crossing (IBEX) system implemented in this operational test was intended to demonstrate the integration of electronic information systems and technologies aimed at facilitating the safe, efficient movement of goods...

IBEX: The Evolving Global View and Synergies with In Situ Voyager Observations

NASA Astrophysics Data System (ADS)

McComas, D. J.

2015-12-01

The Interstellar Boundary Explorer (IBEX) has now returned nearly seven years of observations, which comprise 14 full sets of energy resolved all-sky maps and provide the global view of our Sun's interaction with very local part of the galaxy. With such a long baseline of observations, we are able to examine time variations in the outer heliosphere as it responds to both 11-year solar cycle variations and longer term secular evolution of the three dimensional solar wind. Now that we have collected over half a solar cycle of observations, IBEX is beginning to show us how the heliosphere - our home in the galaxy - varies in time as well as space. In this talk we present the most recent observations and review some other recent discoveries from IBEX. We also examine the synergy between the global view provided by IBEX and the in situ observations form the Voyager 1 and 2 spacecraft. Finally, we discuss the incredible improvement in interstellar observations - and our understanding of the local interstellar medium - that the Interstellar Mapping and Acceleration Probe (IMAP) will provide.

ON THE GEOMETRY OF THE IBEX RIBBON

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sylla, Adama; Fichtner, Horst

2015-10-01

The Energetic Neutral Atom (ENA) full-sky maps obtained with the Interstellar Boundary Explorer (IBEX) show an unexpected bright narrow band of increased intensity. This so-called ENA ribbon results from charge exchange of interstellar neutral atoms with protons in the outer heliosphere or beyond. Among other hypotheses it has been argued that this ribbon may be related to a neutral density enhancement, or H-wave, in the local interstellar medium. Here we quantitatively demonstrate, on the basis of an analytical model of the principal large-scale heliospheric structure, that this scenario for the ribbon formation leads to results that are fully consistent withmore » the observed location of the ribbon in the full-sky maps at all energies detected with high-energy sensor IBEX-Hi.« less

Energetic neutral atom and interstellar flow observations with IBEX: Implications for the global heliosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwadron, N. A., E-mail: nschwadron@unh.edu; Southwest Research Institute, San Antonio, TX, 78238; McComas, D. J.

2016-03-25

Since launch in Oct. 2008, IBEX, with its two energetic neutral atom (ENA) cameras, has provided humankind with the first-ever global images of the complex boundary separating the heliosphere from the local interstellar medium (LISM). IBEX’s energy-resolved all-sky maps, collected every six months, are yielding remarkable new insights into the heliospheres structure as it is shaped by the combined forces of the local interstellar flow, the local interstellar magnetic field (LISMF), and the evolving solar wind. IBEX has also acquired the first images of ENAs backscattered from the surface of the moon as well as global images of the magnetosphericmore » response to solar wind disturbances. IBEX thus addresses all three Heliophysics science objectives set forth in the 2014 Science Plan for NASAs Science Mission Directorate (SMD) as well as the goals in the recent Solar and Space Physics Decadal Survey (NRC 2012). In addition, with the information it provides on the properties of the LISM and the LISMF, IBEX represents a unique bridge between heliophysics and astrophysics, and fills in critical knowledge for understanding the habitability of exoplanetary systems and the future habitability of Earth and the solar system. Because of the few-year time lag due to solar wind and ENA transport, IBEX observed the solar wind/ LISM interaction characteristic of declining phase/solar minimum conditions. In the continuing mission, IBEX captures the response of the interstellar boundaries to the changing structure of the solar wind in its transition toward the “mini” solar maximum and possibly the decline into the next solar minimum. The continuing IBEX mission affords never-to-be-repeated opportunities to coordinate global imaging of the heliospheric boundary with in-situ measurements by the Voyagers as they pass beyond the heliopause and start to directly sample the LISM.« less

Position of the IBEX ribbon as a key to understand its origin

NASA Astrophysics Data System (ADS)

Swaczyna, Pawel; Bzowski, Maciej; Sokół, Justyna M.; Christian, Eric R.; Funsten, Herbert O.; McComas, David J.; Schwadron, Nathan A.

2017-04-01

Observations of the energetic neutral atom (ENA) emission by the Interstellar Boundary Explorer (IBEX) allow for remote sensing of the plasma properties in heliosheath. The first IBEX results revealed an unexpected arc-like enhancement of the ENA flux in the sky, dubbed the IBEX ribbon. This discovery led to formulation of more than a dozen hypotheses on its origin. The emission source region proposed in these hypotheses span the heliospheric termination shock up to a hypothetical nearby interface between the Local Interstellar Cloud and a local bay in the Local Bubble. Among these hypotheses is the concept that the ribbon is produced by the secondary ENA mechanism, operating in the outer heliosheath. The observational strategy of IBEX allows observation of the same part of the sky from the opposite sides of the Sun every six months and thus provides parallax viewing with a baseline of 2 AU. After correcting the observations for the Compton-Getting effect and for gravitational deflection and radiation pressure, we use this parallax viewing to precisely determine the apparent position of the maximum flux associated with the ribbon. We find that the ribbon peak position differs semi-annually by an angle of 0.41±0.15 deg, which we interpret as the parallax effect. This angle corresponds to a distance of 140-38+84 AU, and thus suggests that most likely the ribbon's source is located just beyond the heliopause. Comparison of the IBEX ribbon position in five energy steps of IBEX-Hi shows a systematic shift, which changes the position of the ribbon center by ˜10 deg. We find that it can be explained using an analytic model of the secondary ENA mechanism with the neutralized supersonic solar wind as the source of the primary ENAs, which are ionized in the outer heliosheath, picked up by the ambient magnetic field, and eventually re-neutralized (as originally conceived, McComas et al. 2009). We use a realistic model of the solar wind evolution dependent on heliographic

Observing the Interstellar Neutral He Gas Flow with a Variable IBEX Pointing Strategy

NASA Astrophysics Data System (ADS)

Leonard, T.; Moebius, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; McComas, D. J.; Schwadron, N.; Wurz, P.

2015-12-01

The Interstellar Neutral (ISN) gas flow can be observed at Earth's orbit due to the motion of the solar system relative to the surrounding interstellar gas. Since He is minimally influenced by ionization and charge exchange, the ISN He flow provides a sample of the pristine interstellar environment. The Interstellar Boundary Explorer (IBEX) has observed the ISN gas flow over the past 7 years from a highly elliptical orbit around the Earth. IBEX is a Sun-pointing spinning spacecraft with energetic neutral atom (ENA) detectors observing perpendicular to the spacecraft spin axis. Due to the Earth's orbital motion around the Sun, it is necessary for IBEX to perform spin axis pointing maneuvers every few days to maintain a sunward pointed spin axis. The IBEX operations team has successfully pointed the spin axis in a variety of latitude orientations during the mission, including in the ecliptic during the 2012 and 2013 seasons, about 5 degrees below the ecliptic during the 2014 season, and recently about 5 degrees above the ecliptic during the 2015 season, as well as optimizing observations with the spin axis pointed along the Earth-Sun line. These observations include a growing number of measurements near the perihelion of the interstellar atom trajectories, which allow for an improved determination of the ISN He bulk flow longitude at Earth orbit. Combining these bulk flow measurements with an analytical model (Lee et al. 2012 ApJS, 198, 10) based upon orbital mechanics improves the knowledge of the narrow ISN parameter tube, obtained with IBEX, which couples the interstellar inflow longitude, latitude, speed, and temperature.

Heliosphere Responds to a Large Solar Wind Intensification: Decisive Observations from IBEX

NASA Astrophysics Data System (ADS)

McComas, D. J.; Dayeh, M. A.; Funsten, H. O.; Heerikhuisen, J.; Janzen, P. H.; Reisenfeld, D. B.; Schwadron, N. A.; Szalay, J. R.; Zirnstein, E. J.

2018-03-01

Our heliosphere—the bubble in the local interstellar medium produced by the Sun’s outflowing solar wind—has finally responded to a large increase in solar wind output and pressure in the second half of 2014. NASA’s Interstellar Boundary Explorer (IBEX) mission remotely monitors the outer heliosphere by observing energetic neutral atoms (ENAs) returning from the heliosheath, the region between the termination shock and heliopause. IBEX observed a significant enhancement in higher energy ENAs starting in late 2016. While IBEX observations over the previous decade reflected a general reduction of ENA intensities, indicative of a deflating heliosphere, new observations show that the large (∼50%), persistent increase in the solar wind dynamic pressure has modified the heliosheath, producing enhanced ENA emissions. The combination of these new observations with simulation results indicate that this pressure is re-expanding our heliosphere, with the termination shock and heliopause already driven outward in the locations closest to the Sun. The timing between the IBEX observations, a large transient pressure enhancement seen by Voyager 2, and the simulations indicates that the pressure increase propagated through the heliosheath, reflected off the heliopause, and the enhanced density of the solar wind filled the heliosheath behind it before generating significantly enhanced ENA emissions. The coming years should see significant changes in anomalous cosmic rays, galactic cosmic radiation, and the filtration of interstellar neutral atoms into the inner heliosphere.

In vivo antitumor potential of Ipomoea pes-caprae on melanoma cancer

PubMed Central

Manigauha, Ashish; Kharya, M. D.; Ganesh, N.

2015-01-01

Background: The incidence of skin cancers is rising gradually. The treatment of melanoma is also necessary to prevent the spread of cancer to other body organs. Scientific literatures have not documented any evidence of the antitumor potential of Ipomoea pes-caprae on melanoma. Aim of the Study: Explore in vivo antitumor potential of I. pes-caprae on melanoma cancer. Materials and Methods: Petroleum ether (60°C–80°C), methanolic and aqueous extracts, and swaras prepared from the whole herb of I. pes-caprae were assessed for their antitumor activity. The extracts and swaras at doses of 25 and 50 mg/kg b. wt. were administered intraperitoneal along with chemo and radiotherapy for 40 days for exploring antitumor activity against melanoma cancer (B16F10) in male C57BL mice. The results obtained from tumor volume, and histopathological studies were compared with the control and dacarbazine used as a standard. Results: Antitumor effect of I. pes-caprae extracts and swaras on melanoma cancer was found to be significant (P < 0.01) compared to normal control. The tumor volume inhibition against tumor-bearing mice, although differed from each other, was concentration dependent. Administration of plant extracts and swaras from the day 1 since tumor inducted. The induction of tumor was found delayed by 10–15 days and the tumor volume on the day 40 was similar to the Dacarbazine treatment used as a standard. Conclusion: The results obtained from the tumor volume and histopathological studies clearly revealed the antitumor potential of I. pes-caprae on melanoma cancer. PMID:25829785

CAN IBEX DETECT INTERSTELLAR NEUTRAL HELIUM OR OXYGEN FROM ANTI-RAM DIRECTIONS?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galli, A.; Wurz, P.; Park, J.

To better constrain the parameters of the interstellar neutral flow, we searched the Interstellar Boundary EXplorer (IBEX)-Lo database for helium and oxygen from the interstellar medium in the anti-ram direction in the three years (2009–2011) with the lowest background rates. We found that IBEX-Lo cannot observe interstellar helium from the anti-ram direction because the helium energy is too low for indirect detection by sputtering off the IBEX-Lo conversion surface. Our results show that this sputtering process has a low energy threshold between 25 and 30 eV, whereas the energy of the incident helium is only 10 eV for these observations.more » Interstellar oxygen, on the other hand, could in principle be detected in the anti-ram hemisphere, but the expected magnitude of the signal is close to the detection limit imposed by counting statistics and by the magnetospheric foreground.« less

IBEX Observations and Simulations of the Ribbon: Implications for the Very Local Interstellar Medium

NASA Astrophysics Data System (ADS)

Zirnstein, E.

2017-12-01

The crossing of the Voyager 1 spacecraft into the very local interstellar medium (VLISM) in 2012 August opened a new chapter in humankind's exploration of space. Voyager 1 has been measuring interstellar plasma properties outside the heliosphere, including the galactic cosmic ray flux, (indirectly) the compressed interstellar plasma, as well as the compressed interstellar magnetic field draped around the heliosphere. Interstellar Boundary Explorer (IBEX) neutral atom observations complement the only in situ observations of the VLISM made by Voyager 1. IBEX is an Earth-orbiting spacecraft equipped with two single-pixel cameras that detect neutral atoms produced by the interaction of the solar wind (SW) with the VLISM, as well as neutral atoms flowing into the heliosphere from the VLISM itself. After its launch in 2009, IBEX discovered the unexpected existence of the "ribbon," a nearly circular arc across the sky of enhanced hydrogen ENA fluxes observed at keV energies. The ribbon fluxes originate from look directions perpendicular to the local interstellar magnetic field draped around the heliosphere, and can be used to derive the VLISM magnetic field magnitude and direction far from the heliopause. Thus, IBEX observations of the ribbon complement Voyager 1 in situ observations of the VLISM magnetic field, and provide insight into what Voyager 2 will observe after it crosses the heliopause. This talk will review key IBEX observations of the VLISM environment related to the ribbon and the VLISM magnetic field observed by Voyager 1, and their implications for the VLISM environment.

Application of the stage-projection model with density-dependent fecundity to the population dynamics of Spanish ibex

USGS Publications Warehouse

Escos, J.; Alados, C.L.; Emlen, John M.

1994-01-01

A stage-class population model with density-feedback term included was used to identify the most critical parameters determining the population dynamics of female Spanish ibex (Capra pyrenaica) in southern Spain. A population in the Cazorla and Segura mountains is rapidly declining, but the eastern Sierra Nevada population is growing. The stable population density obtained using estimated values of kid and adult survival (0.49 and 0.87, respectively) and with fecundity equal to 0.367 in the absence of density feedback is 12.7 or 16.82 individuals/km2, based on a non-time-lagged and a time-lagged model, respectively. Given the maximum estimate of fecundity and an adult survival rate of 0.87, a kid survival rate of at least 0.41 is required to avoid extinction. At the minimum fecundity estimate, kid survival would have to exceed 0.52. Elasticities were used to estimate the influence of variation in life-cycle parameters on the intrinsic rate of increase. Adult survival is the most critical parameter, while fecundity and juvenile survival are less important. An increase in adult survival from 0.87 to 0.91 in the Cazorla and Segura mountains population would almost stabilize the population in the absence of stochastic variation, while the same increase in the Sierra Nevada population would yield population growth of 4–5% per annum. A reduction in adult survival to 0.83 results in population decline in both cases.

Inland occurrence of the strand plant Ipomeoa pes-caprae (Convolvulaceae) around Lake Nicaragua

Treesearch

Margaret S. Devall; Leonard B. Thien

2005-01-01

Ipomoea pes-caprae (L.) Roth (railroad vine, Convolvulaceae) is a pantropical, perenial beach plant that forms large patches just above the high tide line on coastal beaches and dunes throughout tropical and subtropical areas of the world. In spite of its wide distribution, only rare occurrences of I. pes-caprae have been...

Neutral interstellar helium parameters based on Ulysses/GAS and IBEX-LO observations: What are the reasons for the differences?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Katushkina, O. A.; Izmodenov, V. V.; Wood, B. E.

Recent analysis of the interstellar helium fluxes measured in 2009-2010 at Earth's orbit by the Interstellar Boundary Explorer (IBEX) has suggested that the interstellar velocity (both direction and magnitude) is inconsistent with that derived previously from Ulysses/GAS observations made in the period from 1990 to 2002 at 1.5-5.5 AU from the Sun. Both results are model dependent, and models that were used in the analyses are different. In this paper, we perform an analysis of the Ulysses/GAS and IBEX-Lo data using our state-of-the-art three-dimensional time-dependent kinetic model of interstellar atoms in the heliosphere. For the first time, we analyze Ulysses/GASmore » data from year 2007, the closest available Ulysses/GAS observations in time to the IBEX observations. We show that the interstellar velocity derived from the Ulysses 2007 data is consistent with previous Ulysses results and does not agree with the velocity derived from IBEX. This conclusion is very robust since, as is shown in the paper, it does not depend on the ionization rates adopted in theoretical models. We conclude that Ulysses data are not consistent with the new local interstellar medium (LISM) velocity vector from IBEX. In contrast, IBEX data, in principle, could be explained with the LISM velocity vector derived from the Ulysses data. This is possible for the models where the interstellar temperature increased from 6300 K to 9000 K. There is a need to perform further studies of possible reasons for the broadening of the helium signal core measured by IBEX, which could be an instrumental effect or could be due to unconsidered physical processes.« less

SEPARATION OF THE RIBBON FROM GLOBALLY DISTRIBUTED ENERGETIC NEUTRAL ATOM FLUX USING THE FIRST FIVE YEARS OF IBEX OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwadron, N. A.; Moebius, E.; Kucharek, H.

2014-11-01

The Interstellar Boundary Explorer (IBEX) observes the IBEX ribbon, which stretches across much of the sky observed in energetic neutral atoms (ENAs). The ribbon covers a narrow (∼20°-50°) region that is believed to be roughly perpendicular to the interstellar magnetic field. Superimposed on the IBEX ribbon is the globally distributed flux that is controlled by the processes and properties of the heliosheath. This is a second study that utilizes a previously developed technique to separate ENA emissions in the ribbon from the globally distributed flux. A transparency mask is applied over the ribbon and regions of high emissions. We thenmore » solve for the globally distributed flux using an interpolation scheme. Previously, ribbon separation techniques were applied to the first year of IBEX-Hi data at and above 0.71 keV. Here we extend the separation analysis down to 0.2 keV and to five years of IBEX data enabling first maps of the ribbon and the globally distributed flux across the full sky of ENA emissions. Our analysis shows the broadening of the ribbon peak at energies below 0.71 keV and demonstrates the apparent deformation of the ribbon in the nose and heliotail. We show global asymmetries of the heliosheath, including both deflection of the heliotail and differing widths of the lobes, in context of the direction, draping, and compression of the heliospheric magnetic field. We discuss implications of the ribbon maps for the wide array of concepts that attempt to explain the ribbon's origin. Thus, we present the five-year separation of the IBEX ribbon from the globally distributed flux in preparation for a formal IBEX data release of ribbon and globally distributed flux maps to the heliophysics community.« less

Summative Evaluation Findings from the Interstellar Boundary Explorer (IBEX) Education and Public Outreach Program

NASA Astrophysics Data System (ADS)

Bartolone, L.; Nichols-Yehling, M.; Davis, H. B.; Davey, B.

2014-07-01

The Interstellar Boundary Explorer mission includes a comprehensive Education and Public Outreach (EPO) program in heliophysics that is overseen and implemented by the Adler Planetarium and evaluated by Technology for Learning Consortium, Inc. Several components of the IBEX EPO program were developed during the prime phase of the mission that were specifically designed for use in informal institutions, especially museums and planetaria. The program included a widely distributed planetarium show with accompanying informal education activities, printed posters, lithographs and other resources, funding for the development of the GEMS Space Science Sequence for Grades 6-8 curriculum materials, development of the IBEX mission website, development of materials for people with special needs, participation in the Heliophysics Educator Ambassador program, and support for the Space Explorers Afterschool Science Club for Chicago Public Schools. In this paper, we present an overview of the IBEX EPO program summative evaluation techniques and results for 2008 through 2012.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, M. I.; McComas, D. J.; Dayeh, M. A.; Funsten, H. O.; Schwadron, N.; Heerikhuisen, J.; Fuselier, S. A.; Allegrini, F.; Pogorelov, N.; Zank, G. P.

2015-12-01

We investigate the latitude, energy, and time variations of the globally distributed ~0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (~0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ~2.29 and ~3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ~0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this work we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, Mihir; Heerikhuisen, Jacob; McComas, David; Funsten, Herbert; Pogorelov, Nikolai; Zank, Gary; Schwadron, Nathan; Fuselier, Stephen; Allegrini, Frederic; Dayeh, Maher A.

2016-07-01

We investigate the latitude, energy, and time variations of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ˜2.29 and ˜3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur within ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ˜0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this paper we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.

Molecular characterization of Cryptosporidium from animal sources in Qinghai province of China.

PubMed

Karanis, Panagiotis; Plutzer, Judit; Halim, Norhaliza Abdul; Igori, Khatanbaatar; Nagasawa, Hideyuki; Ongerth, Jerry; Liqing, Ma

2007-11-01

The presence of Cryptosporidium oocysts in 20 zoo animals of the Xining Zoo, 16 farm yaks and 42 farm goats in Qinghai province, China was investigated by an immunofluorescence test (IFT). The species and/or genotypes were determined by nested polymerase chain reaction (PCR) and sequence analysis of a fragment of the small subunit (SSU) rRNA gene. Cryptosporidium oocysts were found in 16 zoo animals, 2 yaks, and 15 goats by IFT. The IFT positive samples were further investigated by PCR, and 16 of them were found to be positive by that method also. Sequence analysis of the PCR products derived from Cryptosporidium oocysts from Black leopard (Panthera pardus), Heijing He (Grus nigricollis), Barbary sheep (Ammotragus lervia), Takin (Budorcas taxicolor), Lesser panda (Ailurus fulgens), and White-eared pheasant (Crossoptilon crossoptilon) fecal samples matched that of Cryptosporidium parvum mouse genotype. Sequence analyses of other PCR products were consistent with cervine genotype Cryptosporidium from Ibex (Capra ibex), a novel Cryptosporidium genotype from a wild yak (Bos mutus), C. bovis-like genotype from one goat sample and also a novel Cryptosporidium genotype from one other separate goat sample. The present work reports the first data on Cryptosporidium infections in animals from the Qinghai province of mountainous central western China and the first findings of the 'cervine' genotype in Capra ibex, C. bovis-like genotype and the new Cryptosporidium spp. in farm goat and in wild yak.

Field evaluation of the efficacy of fenbendazole in captive wild ruminants.

PubMed

Goossens, E; Dorny, P; Vercammen, F; Vercruysse, J

2005-11-05

The efficacy of in-feed fenbendazole at a dose rate of 7.5 mg/kg bodyweight for three consecutive days was assessed in five Arabian oryx (Oryx leucoryx), six scimitar-horned oryx (Oryx dammah), 14 slender-horned gazelles (Gazella leptoceros), eight Soay sheep (Ovis aries aries soay), 13 alpine ibex (Capra ibex ibex), six red deer (Cervus elaphus hippelaphus) and 11 Nelson's elk (Cervus elaphus nelsoni) kept in five herds in a zoo. The efficacy was assessed by means of repeated faecal egg count reduction (fecr) tests and in vitro egg hatch assays. Fenbendazole was highly effective against nematodes in five of the seven species, consistently reducing egg shedding by more than 90 per cent. In the egg hatch assays of the five herds, 50 per cent inhibition of hatching (ld50) was observed at a concentration of thiabendazole below 0.1 microg/ml. In the Arabian oryx and alpine ibex the efficacy of fenbendazole was less than 90 per cent, and the ld50 in the egg hatch assays was between 0.1 and 0.2 microg/ml thiabendazole.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, Mihir; McComas, David; Dayeh, Maher; Funsten, Herbert; Schwadron, Nathan; Heerikhuisen, Jacob; Fuselier, Stephen; Pogorelov, Nikolai; Zank, Gary; Allegrini, Frederic

2016-04-01

We investigate the latitude, energy, and time variations of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ˜2.29 and ˜3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ˜0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this work we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere. We also discuss the implications of these new results for observational requirements for upcoming missions like IMAP.

Revival of extinct species using nuclear transfer: hope for the mammoth, true for the Pyrenean ibex, but is it time for "conservation cloning"?

PubMed

Piña-Aguilar, Raul E; Lopez-Saucedo, Janet; Sheffield, Richard; Ruiz-Galaz, Lilia I; Barroso-Padilla, Jose de J; Gutiérrez-Gutiérrez, Antonio

2009-09-01

Recent accomplishments in the fields of nuclear transfer and genomics, such as the cloned offspring production from frozen mouse cells, cryopreserved at not too low temperatures without cryoprotectors; or the sequencing of wooly mammoth genome, have opened the opportunity for the revival of extinct species. As expected, they are receiving a lot of publicity in the media and also scientific attention. Furthermore, it was recently published the "revival" of the first extinct subspecie: the Pyrenean ibex (Capra pyrenaica pyrenaica), a wild goat extinct in 2000. This strengthens the field of cloning as it had been tarnished by induced pluripotent stem cells (iPS) and other methods of reprogramming. However, for biological conservation purposes, cloning is not generally accepted as an alternative for animal conservation, and there is an ongoing debate between reproductive scientists and conservation specialists. Although we believe that nuclear transfer technologies have an opportunity in conservation efforts for some species that are on the brink of extinction and that population status, geographical isolation, reproductive characteristics, and human pressure create a situation that is almost unsustainable. In this article we discuss the barriers in cloning mammoths and cloning controversies in conservation from a zoological perspective, citing the species that might benefit from nuclear transfer techniques in the arduous journey so as not to disappear forever from this, our world.

Fractal structures and fractal functions as disease indicators

USGS Publications Warehouse

Escos, J.M; Alados, C.L.; Emlen, J.M.

1995-01-01

Developmental instability is an early indicator of stress, and has been used to monitor the impacts of human disturbance on natural ecosystems. Here we investigate the use of different measures of developmental instability on two species, green peppers (Capsicum annuum), a plant, and Spanish ibex (Capra pyrenaica), an animal. For green peppers we compared the variance in allometric relationship between control plants, and a treatment group infected with the tomato spotted wilt virus. The results show that infected plants have a greater variance about the allometric regression line than the control plants. We also observed a reduction in complexity of branch structure in green pepper with a viral infection. Box-counting fractal dimension of branch architecture declined under stress infection. We also tested the reduction in complexity of behavioral patterns under stress situations in Spanish ibex (Capra pyrenaica). Fractal dimension of head-lift frequency distribution measures predator detection efficiency. This dimension decreased under stressful conditions, such as advanced pregnancy and parasitic infection. Feeding distribution activities reflect food searching efficiency. Power spectral analysis proves to be the most powerful tool for character- izing fractal behavior, revealing a reduction in complexity of time distribution activity under parasitic infection.

Global anisotropies in TeV cosmic rays related to the Sun's local galactic environment from IBEX.

PubMed

Schwadron, N A; Adams, F C; Christian, E R; Desiati, P; Frisch, P; Funsten, H O; Jokipii, J R; McComas, D J; Moebius, E; Zank, G P

2014-02-28

Observations with the Interstellar Boundary Explorer (IBEX) have shown enhanced energetic neutral atom (ENA) emission from a narrow, circular ribbon likely centered on the direction of the local interstellar medium (LISM) magnetic field. Here, we show that recent determinations of the local interstellar velocity, based on interstellar atom measurements with IBEX, are consistent with the interstellar modulation of high-energy (tera-electron volts, TeV) cosmic rays and diffusive propagation from supernova sources revealed in global anisotropy maps of ground-based high-energy cosmic-ray observatories (Milagro, Asγ, and IceCube). Establishing a consistent local interstellar magnetic field direction using IBEX ENAs at hundreds to thousands of eV and galactic cosmic rays at tens of TeV has wide-ranging implications for the structure of our heliosphere and its interactions with the LISM, which is particularly important at the time when the Voyager spacecraft are leaving our heliosphere.

Global Anisotropies in TeV Cosmic Rays Related to the Sun's Local Galactic Environment from IBEX

NASA Technical Reports Server (NTRS)

Schwadron, N. A.; Adams, F. C.; Christian, E. R.; Desiati, P.; Frisch, P.; Funsten, H. O.; Jokipii, J. R.; McComas, D. J.; Moebius, E.; Zank, G. P.

2014-01-01

Observations with the Interstellar Boundary Explorer (IBEX) have shown enhanced energetic neutral atom (ENA) emission from a narrow, circular ribbon likely centered on the direction of the local interstellar medium (LISM) magnetic field. Here, we show that recent determinations of the local interstellar velocity, based on interstellar atom measurements with IBEX, are consistent with the interstellar modulation of high-energy (tera-electron volts, TeV) cosmic rays and diffusive propagation from supernova sources revealed in global anisotropy maps of ground-based high-energy cosmic-ray observatories (Milagro, Asg, and IceCube). Establishing a consistent local interstellar magnetic field direction using IBEX ENAs at hundreds to thousands of eV and galactic cosmic rays at tens of TeV has wide-ranging implications for the structure of our heliosphere and its interactions with the LISM, which is particularly important at the time when the Voyager spacecraft are leaving our heliosphere.

Energetic neutral atoms measured by the interstellar boundary explorer (IBEX): evidence for multiple heliosheath populations

DOE PAGES

Desai, M. I.; Allegrini, F. A.; Bzowski, M.; ...

2013-12-13

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. and Fuselier et al. and combine and compare ENA spectra from the first 3 yr of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sight (LOSs) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the three-dimensional heliosphere and its constituent ion populations. Our resultsmore » show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOSs of the Voyagers are consistent with several models in which the parent pickup ion (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. Here we discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. In conclusion, these results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.« less

Energetic Neutral Atoms Measured by the Interstellar Boundary Explorer (IBEX): Evidence for Multiple Heliosheath Populations

NASA Astrophysics Data System (ADS)

Desai, M. I.; Allegrini, F. A.; Bzowski, M.; Dayeh, M. A.; Funsten, H.; Fuselier, S. A.; Heerikhuisen, J.; Kubiak, M. A.; McComas, D. J.; Pogorelov, N. V.; Schwadron, N. A.; Sokół, J. M.; Zank, G. P.; Zirnstein, E. J.

2014-01-01

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. and Fuselier et al. and combine and compare ENA spectra from the first 3 yr of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sight (LOSs) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the three-dimensional heliosphere and its constituent ion populations. Our results show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOSs of the Voyagers are consistent with several models in which the parent pickup ion (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. These results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.

Designing Effective EPO Products for Museums: Preliminary Evaluation Findings from the Interstellar Boundary Explorer (IBEX) EPO Program

NASA Astrophysics Data System (ADS)

Nichols, M.; Bartolone, L.; Baldassari, C.; Hoyer-Winfield, S.

2011-09-01

The Interstellar Boundary Explorer (IBEX) mission includes a comprehensive EPO program in astronomy and heliophysics that is overseen and implemented by the Adler Planetarium in Chicago, Illinois. Several EPO components were developed specifically for informal institutions, especially museums and planetaria. The program includes an internationally distributed planetarium show with accompanying informal educational materials. Our evaluator, the Program Evaluation and Research Group (PERG) at Lesley University, Cambridge, Massachusetts, assesses the effectiveness of the EPO program. In late 2009 through early 2010, more than 70 planetaria worldwide received the IBEX planetarium show. Of the many U.S. planetaria, the first 25 received the IBEX planetarium show and were offered the opportunity to receive, at no charge, accompanying informal education materials, including posters, lithographs, demonstration materials, lesson plans, and more. In Spring 2010, PERG staff conducted a study designed to gauge the effectiveness of the distribution process for the planetarium show, gather information on the professional development needs of the organizations, and document reactions of museum staff to the IBEX informal education materials and their usefulness as companion pieces to the planetarium show. In this paper, we will present preliminary findings of this particular study, in the hopes that future EPO work can make use of data in this report.

LOCAL INTERSTELLAR MEDIUM: SIX YEARS OF DIRECT SAMPLING BY IBEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

McComas, D. J.; Fuselier, S. A.; Schwadron, N. A., E-mail: dmccomas@swri.edu, E-mail: sfuselier@swri.edu, E-mail: Nathan.schwadron@unh.edu

2015-10-15

The Interstellar Boundary Explorer (IBEX) has been directly observing neutral atoms from the local interstellar medium for the last six years (2009–2014). This paper ties together the 14 studies in this Astrophysical Journal Supplement Series Special Issue, which collectively describe the IBEX interstellar neutral results from this epoch and provide a number of other relevant theoretical and observational results. Interstellar neutrals interact with each other and with the ionized portion of the interstellar population in the “pristine” interstellar medium ahead of the heliosphere. Then, in the heliosphere's close vicinity, the interstellar medium begins to interact with escaping heliospheric neutrals. Inmore » this study, we compare the results from two major analysis approaches led by IBEX groups in New Hampshire and Warsaw. We also directly address the question of the distance upstream to the pristine interstellar medium and adjust both sets of results to a common distance of ∼1000 AU. The two analysis approaches are quite different, but yield fully consistent measurements of the interstellar He flow properties, further validating our findings. While detailed error bars are given for both approaches, we recommend that for most purposes, the community use “working values” of ∼25.4 km s{sup −1}, ∼75.°7 ecliptic inflow longitude, ∼ −5.°1 ecliptic inflow latitude, and ∼7500 K temperature at ∼1000 AU upstream. Finally, we briefly address future opportunities for even better interstellar neutral observations to be provided by the Interstellar Mapping and Acceleration Probe mission, which was recommended as the next major Heliophysics mission by the NRC's 2013 Decadal Survey.« less

Shedding of Clostridium difficile PCR ribotype 078 by zoo animals, and report of an unstable metronidazole-resistant isolate from a zebra foal (Equus quagga burchellii).

PubMed

Álvarez-Pérez, Sergio; Blanco, José L; Martínez-Nevado, Eva; Peláez, Teresa; Harmanus, Celine; Kuijper, Ed; García, Marta E

2014-03-14

Clostridium difficile is an emerging and potentially zoonotic pathogen, but its prevalence in most animal species, including exhibition animals, is currently unknown. In this study we assessed the prevalence of faecal shedding of C. difficile by zoo animals, and determined the ribotype, toxin profile and antimicrobial susceptibility of recovered isolates. A total of 200 samples from 40 animal species (36.5% of which came from plains zebra, Equus quagga burchellii) were analysed. C. difficile was isolated from 7 samples (3.5% of total), which came from the following animal species: chimpanzee (Pan troglodytes troglodytes), dwarf goat (Capra hircus), and Iberian ibex (Capra pyrenaica hispanica), with one positive sample each; and plains zebra, with 4 positive samples from 3 different individuals. Most recovered isolates (4/7, 57.1%) belonged to the epidemic PCR ribotype 078, produced toxins A and B, and had the genes encoding binary toxin (i.e. A(+)B(+)CDT(+) isolates). The remaining three isolates belonged to PCR ribotypes 039 (A(-)B(-)CDT(-)), 042 (A(+)B(+)CDT(-)) and 110 (A(-)B(+)CDT(-)). Regardless of their ribotype, all isolates displayed high-level resistance to the fluoroquinolones ciprofloxacin, enrofloxacin and levofloxacin. Some isolates were also resistant to meropenem and/or ertapenem. A ribotype 078 isolate recovered from a male zebra foal initially showed in vitro resistance to metronidazole (MIC ≥ 256 μg/ml), but lost that trait after subculturing on non-selective media. We conclude that zoo animals belonging to different species can carry ribotype 078 and other toxigenic strains of C. difficile showing resistance to antimicrobial compounds commonly used in veterinary and/or human medicine. Copyright © 2014 Elsevier B.V. All rights reserved.

History vs. legend: Retracing invasion and spread of Oxalis pes-caprae L. in Europe and the Mediterranean area

PubMed Central

Signorini, Maria Adele; Foggi, Bruno; Della Giovampaola, Enrico; Ongaro, Luca; Vivona, Laura; Santosuosso, Ugo; Tani, Corrado; Bruschi, Piero

2017-01-01

Oxalis pes-caprae L. is a South African geophyte that behaves as an invasive in the eurimediterranean area. According to a long-established hypothesis, O. pes-caprae may have invaded Europe and the Mediterranean area starting from a single plant introduced in the Botanical Garden of Malta at the beginning of the 19th century. The aim of this work was to test this hypothesis, to track the arrival of O. pes-caprae in different countries of the Euro-Mediterranean area and to understand the pathways of spreading and particularly its starting point(s). Historical data attesting the presence of the plant in the whole Euro-Mediterranean region were collected from different sources: herbarium specimens, Floras and other botanical papers, plant lists of gardens, catalogs of plant nurseries and plant dealers. First records of the plant (both cultivated and wild) for each Territorial Unit (3rd level of NUTS) were selected and used to draw up a diachronic map and an animated graphic. Both documents clearly show that oldest records are scattered throughout the whole area, proving that the plant arrived in Europe and in the Mediterranean region more times independently and that its spreading started in different times from several different centers of invasion. Botanical gardens and other public or private gardens, nurseries and plant dealers, and above all seaside towns and harbors seemingly played a strategic role as a source of either intentional and unintentional introduction or spread. A geographic profiling analysis was performed to analyse the data. We used also techniques (Silhouette, Kmeans and Voronoi tessellation) capable of verifying the presence of more than one independent clusters of data on the basis of their geographical distribution. Microsatellites were employed for a preliminary analysis of genetic variation in the Mediterranean. Even if the sampling was insufficient, particularly among the populations of the original area, our data supported three main

Energetic Neutral Atoms Measured by the Interstellar Boundary Explorer (IBEX): Evidence for Multiple Heliosheath Ion Populations

NASA Astrophysics Data System (ADS)

Desai, M. I.; Allegrini, F.; Bzowski, M.; Dayeh, M. A.; Funsten, H. O.; Fuselier, S.; Kubiak, M. A.; McComas, D. J.; Pogorelov, N. V.; Schwadron, N.; Sokol, J. M.; Zank, G. P.; Zirnstein, E. J.

2013-12-01

Energetic Neutral Atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. (2012) and Fuselier et al. (2012) and combine and compare ENA spectra from the first three years of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sights (LOS) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the 3D heliosphere and its constituent ion populations. Our results show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOS of the Voyagers are consistent with several models in which the parent pickup (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower-energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. These results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.

The antibody loci of the domestic goat (Capra hircus)

USDA-ARS?s Scientific Manuscript database

The domestic goat (Capra hircus) is an important ruminant species, both as a source of antibody-based reagents for research and biomedical applications, and as an economically important animal for agriculture, particularly for developing nations that maintain most of the global goat population. Char...

Time Variations of the ENA Flux Observed by IBEX: Is the Outer Heliosphere Evolving?

NASA Astrophysics Data System (ADS)

McComas, D. J.; Bzowski, M.; Clark, G.; Crew, G. B.; Demajistre, R.; Funsten, H. O.; Fuselier, S. A.; Gruntman, M.; Janzen, P.; Livadiotis, G.; Moebius, E.; Reisenfeld, D. B.; Roelof, E. C.; Schwadron, N. A.

2009-12-01

The Interstellar Boundary Explorer (IBEX) mission has just provided the first global observations of the heliosphere’s interstellar interaction [McComas et al., 2009 and other papers in the IBEX special issue of Science]. IBEX all-sky maps and energy spectra provide detailed information about this interaction. Because of the way IBEX collects its observations, each swath of the sky is revisited every six months, with the winter viewing, when IBEX’s orbit is largely sunward of the Earth, providing significantly cleaner measurements than the summer season, when IBEX’s orbit rotates through the Earth’s magnetosheath and magnetotail. Very limited initial overlapping data showed that the observed structure was largely stable over the first six months of observations, however, it also suggested the tantalizing possibility that there could be some temporal evolution. By the time of the Fall AGU meeting, much of the sky will be imaged a second time. This study will provide a comparison of these sets of observations, especially at higher energies where the statistics are better, and directly address the question of if the outer heliosphere is evolving over timescales on the order of half a year. Reference McComas, D.J., F. Allegrini, P. Bochsler, M. Bzowski, E.R. Christian, G.B. Crew, R. DeMajistre, H. Fahr, H. Fichtner, P.C. Frisch, H.O. Funsten, S. A. Fuselier, G. Gloeckler, M. Gruntman, J. Heerikhuisen, V. Izmodenov, P. Janzen, P. Knappenberger, S. Krimigis, H. Kucharek, M. Lee, G. Livadiotis, S. Livi, R.J. MacDowall, D. Mitchell, E. Möbius, T. Moore, N.V. Pogorelov, D. Reisenfeld, E. Roelof, L. Saul, N.A. Schwadron, P.W. Valek, R. Vanderspek, P. Wurz, G.P. Zank, First Global Observations of the Interstellar Interaction from the Interstellar Boundary Explorer, submitted to Science, 2009.

Genetic characterization of Meigu goat (Capra hircus) based on the mitochondrial DNA.

PubMed

Duan, Xiaoyue; Zhang, Hao; Li, Haijun; Niu, Lili; Wang, Linjie; Li, Li; Zhang, Hongping; Zhong, Tao

2016-01-01

Meigu goat (Capra hircus) is one of the indigenous goat breeds in China. Our research findings revealed that the entire mitochondrial genome of Meigu goat was 16,643 bp in length. The contents of A, C, T and G in the mitochondrial genome were 33.59%, 26.05%, 27.31% and 13.05%, respectively. The mitogenome of meigu goat contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and 1 control region. Components of the Meigu goat's mitogenome were similar to those of other Capra hircus in gene arrangement and composition. These results could provide essential information for molecular phylogenetic and evolutionary analyses of domestic goats.

Interstellar Gas Flow Vector and Temperature Determination over 5 Years of IBEX Observations

NASA Astrophysics Data System (ADS)

Möbius, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; Leonard, T.; McComas, D. J.; Schwadron, N.; Sokół, J. M.; Wurz, P.

2015-01-01

The Interstellar Boundary Explorer (IBEX) observes the interstellar neutral gas flow trajectories at their perihelion in Earth's orbit every year from December through early April, when the Earth's orbital motion is into the oncoming flow. These observations have defined a narrow region of possible, but very tightly coupled interstellar neutral flow parameters, with inflow speed, latitude, and temperature as well-defined functions of inflow longitude. The best- fit flow vector is different by ≈ 3° and lower by ≈ 3 km/s than obtained previously with Ulysses GAS, but the temperature is comparable. The possible coupled parameter space reaches to the previous flow vector, but only for a substantially higher temperature (by ≈ 2000 K). Along with recent pickup ion observations and including historical observations of the interstellar gas, these findings have led to a discussion, whether the interstellar gas flow into the solar system has been stable or variable over time. These intriguing possibilities call for more detailed analysis and a longer database. IBEX has accumulated observations over six interstellar flow seasons. We review key observations and refinements in the analysis, in particular, towards narrowing the uncertainties in the temperature determination. We also address ongoing attempts to optimize the flow vector determination through varying the IBEX spacecraft pointing and discuss related implications for the local interstellar cloud and its interaction with the heliosphere.

Interstellar Flow and Temperature Determination with IBEX: Robustness and Sensitivity to Systematic Effects

NASA Astrophysics Data System (ADS)

Möbius, E.; Bzowski, M.; Frisch, P. C.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; Leonard, T.; McComas, D. J.; Schwadron, N. A.; Sokół, J. M.; Swaczyna, P.; Wurz, P.

2015-10-01

The Interstellar Boundary Explorer (IBEX) samples the interstellar neutral (ISN) gas flow of several species every year from December through late March when the Earth moves into the incoming flow. The first quantitative analyses of these data resulted in a narrow tube in four-dimensional interstellar parameter space, which couples speed, flow latitude, flow longitude, and temperature, and center values with approximately 3° larger longitude and 3 km s-1 lower speed, but with temperatures similar to those obtained from observations by the Ulysses spacecraft. IBEX has now recorded six years of ISN flow observations, providing a large database over increasing solar activity and using varying viewing strategies. In this paper, we evaluate systematic effects that are important for the ISN flow vector and temperature determination. We find that all models in use return ISN parameters well within the observational uncertainties and that the derived ISN flow direction is resilient against uncertainties in the ionization rate. We establish observationally an effective IBEX-Lo pointing uncertainty of ±0.°18 in spin angle and confirm an uncertainty of ±0.°1 in longitude. We also show that the IBEX viewing strategy with different spin-axis orientations minimizes the impact of several systematic uncertainties, and thus improves the robustness of the measurement. The Helium Warm Breeze has likely contributed substantially to the somewhat different center values of the ISN flow vector. By separating the flow vector and temperature determination, we can mitigate these effects on the analysis, which returns an ISN flow vector very close to the Ulysses results, but with a substantially higher temperature. Due to coupling with the ISN flow speed along the ISN parameter tube, we provide the temperature {T}{VISN∞ }=8710+440/-680 K for {V}{ISN∞ }=26 {km} {{{s}}}-1 for comparison, where most of the uncertainty is systematic and likely due to the presence of the Warm Breeze.

The genetics of the pre-Roman Iberian Peninsula: a mtDNA study of ancient Iberians.

PubMed

Sampietro, M L; Caramelli, D; Lao, O; Calafell, F; Comas, D; Lari, M; Agustí, B; Bertranpetit, J; Lalueza-Fox, C

2005-09-01

The Iberians developed a surprisingly sophisticated culture in the Mediterranean coast of the Iberian Peninsula from the 6th century BC until their conquest by the Romans in the 2nd century BC. They spoke and wrote a non-Indo-European language that still cannot be understood; their origins and relationships with other non-Indo-European peoples, like the Etruscans, are unclear, since their funerary practices were based on the cremation of bodies, and therefore anthropology has been unable to approach the study of this people. We have retrieved mitochondrial DNA (mtDNA) from a few of the scarce skeletal remains that have been preserved, some of them belonging to ritualistically executed individuals. The most stringent authentication criteria proposed for ancient DNA, such as independent replication, amino-acid analysis, quantitation of template molecules, multiple extractions and cloning of PCR products, have been followed to obtain reliable sequences from the mtDNA hypervariable region 1 (HVR1), as well as some haplogroup diagnostic SNPs. Phylogeographic analyses show that the haplogroup composition of the ancient Iberians was very similar to that found in modern Iberian Peninsula populations, suggesting a long-term genetic continuity since pre-Roman times. Nonetheless, there is less genetic diversity in the ancient Iberians than is found among modern populations, a fact that could reflect the small population size at the origin of the population sampled, and the heterogenic tribal structure of the Iberian society. Moreover, the Iberians were not especially closely related to the Etruscans, which points to considerable genetic heterogeneity in Pre-Roman Western Europe.

Interstellar Neutral Helium in the Heliosphere from IBEX Observations. V. Observations in IBEX-Lo ESA Steps 1, 2, and 3

NASA Astrophysics Data System (ADS)

Swaczyna, Paweł; Bzowski, Maciej; Kubiak, Marzena A.; Sokół, Justyna M.; Fuselier, Stephen A.; Galli, André; Heirtzler, David; Kucharek, Harald; McComas, David J.; Möbius, Eberhard; Schwadron, Nathan A.; Wurz, P.

2018-02-01

Direct-sampling observations of interstellar neutral (ISN) He by the Interstellar Boundary Explorer (IBEX) provide valuable insight into the physical state of and processes operating in the interstellar medium ahead of the heliosphere. The ISN He atom signals are observed at the four lowest ESA steps of the IBEX-Lo sensor. The observed signal is a mixture of the primary and secondary components of ISN He and H. Previously, only data from one of the ESA steps have been used. Here, we extend the analysis to data collected in the three lowest ESA steps with the strongest ISN He signal, for the observation seasons 2009–2015. The instrument sensitivity is modeled as a linear function of the atom impact speed onto the sensor’s conversion surface separately for each ESA step of the instrument. We find that the sensitivity increases from lower to higher ESA steps, but within each of the ESA steps it is a decreasing function of the atom impact speed. This result may be influenced by the hydrogen contribution, which was not included in the adopted model, but seems to exist in the signal. We conclude that the currently accepted temperature of ISN He and velocity of the Sun through the interstellar medium do not need a revision, and we sketch a plan of further data analysis aiming at investigating ISN H and a better understanding of the population of ISN He originating in the outer heliosheath.

THE ENERGY-DEPENDENT POSITION OF THE IBEX RIBBON DUE TO THE SOLAR WIND STRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swaczyna, Paweł; Bzowski, Maciej; Sokół, Justyna M., E-mail: pswaczyna@cbk.waw.pl

2016-08-10

Observations of energetic neutral atoms (ENAs) allow for remote studies of the condition of plasma in the heliosphere and the neighboring local interstellar medium. The first results from the Interstellar Boundary Explorer ( IBEX ) revealed an arc-like enhancement of the ENA intensity in the sky, known as the ribbon. The ribbon was not expected from the heliospheric models prior to the launch of IBEX . One proposed explanation for the ribbon is the mechanism of secondary ENA emission. The ribbon reveals energy-dependent structure in the relative intensity along its circumference and in its position. That is, the geometric centermore » of the ribbon varies systematically by about 10° in the energy range 0.7–4.3 keV. Here, we show by analytical modeling that this effect is a consequence of the helio-latitudinal structure of the solar wind reflected in the secondary ENAs. Along with a recently measured distance to the ribbon’s source just beyond the heliopause, our findings support the connection of the ribbon with the local interstellar magnetic field by the mechanism of secondary ENA emission. However, the magnitude of the center shift in the highest IBEX energy channel is much larger in the observations than expected from the modeling. This may be due to another, not currently recognized, process of ENA generation.« less

Sarcoptes scabiei infestation does not alter the stability of ectoparasite communities.

PubMed

Carvalho, João; Serrano, Emmanuel; Pettorelli, Nathalie; Granados, José E; Habela, Miguel A; Olmeda, Sonia; Fonseca, Carlos; Pérez, Jesús M

2016-07-01

The host represents a heterogeneous ecosystem where multiple parasite species co-occur and interact with each other for space and resources. Although these interactions may rule the features of an infracommunity and may shape the infracommunity response to external perturbations, the resilience of ectoparasite communities to new infestations remains poorly explored. We analysed the composition of the ectoparasite communities found on 214 individual Iberian ibexes (Capra pyrenaica) inhabiting the Sierra Nevada Natural Space, southern Spain. Using classification and regression trees, we explored how the presence of Sarcoptes scabiei (a highly contagious mite), the off-host environment and the host sex govern the prevalence and abundance of lice and ticks. Null model analysis was applied to assess the impact of S. scabiei on the structure of the ectoparasite communities. Our results suggest that S. scabiei infestation acts in tandem with off-host environment and host sex to define the prevalence and abundance of lice and ticks. We also provided evidence for differences in species co-occurrence only at the early stages of S. scabiei infestation. Regarding species diversity, we recorded that ectoparasite communities in scabietic ibexes reached a high richness faster than those in healthy individuals. Even though we show that ectoparasite burden is correlated with S. scabiei infestation, off-host environment and host sex, the species response to S. scabiei infestation and climate seem to be highly variable and influenced by ectoparasite life-history traits. Ectoparasite communities also appear resilient to perturbations which is in agreement with what was previously reported for endoparasites. Future refinement of sample collection and the incorporation of ecological and epidemiological-related variables may allow us to establish causal effects and deepen the knowledge about the mechanisms and consequences of ectoparasite interactions.

Investigating Global Ion and Neutral Atom Populations with IBEX and Voyager

NASA Technical Reports Server (NTRS)

Florinski, Vladimir

2016-01-01

The main objective of this project was to investigate pickup ion (PUI) production in the solar wind and heliosheath (the region between the termination shock and the heliopause) and compute the distributed energetic neutral atom fluxes throughout the helioshpere. The simulations were constrained by comparing the model output against observations from Ulysses, New Horizons, Voyager 1 and 2, and IBEX space probes. As evidenced by the number of peer reviewed journal publications resulting from the project (13 plus three submitted) and their citation rate (156 citations over three years), the project has made a lasting contribution to the field. The outcome is a significant improvement of our understanding of the pickup ion production and distribution in the distant heliosphere. The team has accomplished the entire set of tasks A-H set forth in the proposal. Namely, the transport modeling framework has been augmented with two populations of pickup ions (PUIs), the boundary conditions for the plasma and interstellar neutral hydrogen were verified against Ulysses and New Horizons PUI and an optimal set of velocity diffusion parameters established. The multi-component fluxes of PUIs were computed and isotropic velocity distributions generated for each cell in the computer simulation that covered the heliosphere from 1.5 AU to the heliopause. The distributions were carefully compared with in situ measurements at 3 AU (Ulysses), 12 AU (New Horizons), and 80-90 AU (Voyager 1 and 2) as well as those inferred from ENA fluxes measured by Cassini and IBEX (Wu et al., 2016). Some examples of modeldata comparison are shown in Figure 1. We have used coupled MHD-plasma and kinetic-neutral code to investigate the likely range of plasma and magnetic field parameters in the local interstellar medium (LISM), based on the assumption that the shape of the IBEX ribbon could be used to determine the orientation of the interstellar magnetic field. While the magnetic field is believed to be

Bioaccumulation of metals and metalloids in medicinal plant Ipomoea pes-caprae from areas impacted by tsunami.

PubMed

Kozak, Lidia; Kokociński, Mikołaj; Niedzielski, Przemysław; Lorenc, Stanisław

2015-02-01

Tsunami events may have an enormous impact on the functioning of aquatic and terrestrial ecosystems by altering various relationships with biotic components. Concentrations of acid-leachable fractions of heavy metals and metalloids in soils and plant samples from areas affected by the December 2004 tsunami in Thailand were determined. Ipomoea pes-caprae, a common plant species growing along the seashore of this region, and frequently used in folk medicine, was selected to assess the presence of selected elements. Elevated amounts of Cd, Pb, Zn, and As in soil samples, and Pb, Zn, As, Se, Cr, and Ni in plant samples were determined from the tsunami-impacted regions for comparison with reference locations. The flowers of Ipomoea pes-caprae contained the highest amounts of these metals, followed by its leaves, and stems. In addition, its bioaccumulation factor (BAF) supports this capability of high metal uptake by Ipomoea pes-caprae from the areas affected by the tsunami in comparison with a reference site. This uptake was followed by the translocation of these elements to the various plant components. The presence of these toxic metals in Ipomoea pes-caprae growing in contaminated soils should be a concern of those who use this plant for medicinal purposes. Further studies on the content of heavy metals and metalloids in this plant in relation to human health concerns are recommended. © 2014 SETAC.

Global Properties of the Heliospheric Termination Shock as inferred from Energetic Neutral Atoms measured by the Interstellar Boundary Explorer (IBEX)

NASA Astrophysics Data System (ADS)

Desai, Mihir; Heerikhuisen, Jacob; McComas, David; Pogorelov, Nikolai; Zank, Gary; Dayeh, Maher; Schwadron, Nathan; Allegrini, Frederic; Zirnstein, Eric

Energetic Neutral Atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. Desai et al. (2012; 2013) combined and compared ENA spectra from the first three years of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sights (LOS) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the 3D heliosphere and its constituent ion populations. These results showed that (1) IBEX ENA fluxes and spectra above ˜0.7 keV measured along the LOS of the Voyagers are consistent with several models in which the parent pickup (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower-energy ENAs between ˜0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We use these results and model the full sky IBEX-Hi energy spectra to probe the microphysical processes occurring in the inner heliospheath near the termination shock and then infer the global properties (e.g., latitudinal and longitudinal variations of the shock compression ratio) of the termination shock.

Diagnosing the Neutral Interstellar Gas Flow at 1 AU with IBEX-Lo

NASA Astrophysics Data System (ADS)

Möbius, E.; Kucharek, H.; Clark, G.; O'Neill, M.; Petersen, L.; Bzowski, M.; Saul, L.; Wurz, P.; Fuselier, S. A.; Izmodenov, V. V.; McComas, D. J.; Müller, H. R.; Alexashov, D. B.

2009-08-01

Every year in fall and spring the Interstellar Boundary Explorer (IBEX) will observe directly the interstellar gas flow at 1 AU over periods of several months. The IBEX-Lo sensor employs a powerful triple time-of-flight mass spectrometer. It can distinguish and image the O and He flow distributions in the northern fall and spring, making use of sensor viewing perpendicular to the Sun-pointing spin axis. To effectively image the narrow flow distributions IBEX-Lo has a high angular resolution quadrant in its collimator. This quadrant is employed selectively for the interstellar gas flow viewing in the spring by electrostatically shutting off the remainder of the aperture. The operational scenarios, the expected data, and the necessary modeling to extract the interstellar parameters and the conditions in the heliospheric boundary are described. The combination of two key interstellar species will facilitate a direct comparison of the pristine interstellar flow, represented by He, which has not been altered in the heliospheric boundary region, with a flow that is processed in the outer heliosheath, represented by O. The O flow distribution consists of a depleted pristine component and decelerated and heated neutrals. Extracting the latter so-called secondary component of interstellar neutrals will provide quantitative constraints for several important parameters of the heliosheath interaction in current global heliospheric models. Finding the fraction and width of the secondary component yields an independent value for the global filtration factor of species, such as O and H. Thus far filtration can only be inferred, barring observations in the local interstellar cloud proper. The direction of the secondary component will provide independent information on the interstellar magnetic field strength and orientation, which has been inferred from SOHO SWAN Ly- α backscattering observations and the two Voyager crossings of the termination shock.

Geomorphology of the Iberian Continental Margin

NASA Astrophysics Data System (ADS)

Maestro, Adolfo; López-Martínez, Jerónimo; Llave, Estefanía; Bohoyo, Fernando; Acosta, Juan; Hernández-Molina, F. Javier; Muñoz, Araceli; Jané, Gloria

2013-08-01

The submarine features and processes around the Iberian Peninsula are the result of a complex and diverse geological and oceanographical setting. This paper presents an overview of the seafloor geomorphology of the Iberian Continental Margin and the adjacent abyssal plains. The study covers an area of approximately 2.3 million km2, including a 50 to 400 km wide band adjacent to the coastline. The main morphological characteristics of the seafloor features on the Iberian continental shelf, continental slope, continental rise and the surrounding abyssal plains are described. Individual seafloor features existing on the Iberian Margin have been classified into three main groups according to their origin: tectonic and/or volcanic, depositional and erosional. Major depositional and erosional features around the Iberian Margin developed in late Pleistocene-Holocene times and have been controlled by tectonic movements and eustatic fluctuations. The distribution of the geomorphological features is discussed in relation to their genetic processes and the evolution of the margin. The prevalence of one or several specific processes in certain areas reflects the dominant morphotectonic and oceanographic controlling factors. Sedimentary processes and the resulting depositional products are dominant on the Valencia-Catalán Margin and in the northern part of the Balearic Promontory. Strong tectonic control is observed in the geomorphology of the Betic and the Gulf of Cádiz margins. The role of bottom currents is especially evident throughout the Iberian Margin. The Galicia, Portuguese and Cantabrian margins show a predominance of erosional features and tectonically-controlled linear features related to faults.

Staphylococcus caprae native mitral valve infective endocarditis.

PubMed

Kwok, T'ng Choong; Poyner, Jennifer; Olson, Ewan; Henriksen, Peter; Koch, Oliver

2016-10-01

Staphylococcus caprae is a rare cause of infective endocarditis. Here, we report a case involving the native mitral valve in the absence of an implantable cardiac electronic device. A 76-year-old man presented with a 2 week history of confusion and pyrexia. His past medical history included an open reduction and internal fixation of a humeral fracture 17 years previously, which remained non-united despite further revision 4 years later. There was no history of immunocompromise or farm-animal contact. Two sets of blood culture bottles, more than 12 h apart, were positive for S. caprae . Trans-thoracic echocardiography revealed a 1×1.2 cm vegetation on the mitral valve, with moderate mitral regurgitation. Due to ongoing confusion, he had a magnetic resonance imaging brain scan, which showed a subacute small vessel infarct consistent with a thromboembolic source. A humeral SPECT-CT (single-photon emission computerized tomography-computerized tomography) scan showed no clear evidence of acute osteomyelitis. Surgical vegetectomy and mitral-valve repair were considered to reduce the risk of further systemic embolism and progressive valve infection. However, the potential risks of surgery to this patient led to a decision to pursue a cure with antibiotic therapy alone. He remained well 3 months after discharge, with repeat echocardiography demonstrating a reduction in the size of the vegetation (0.9 cm). Management of this infection was challenging due to its rarity and its unclear progression, complicated by the dilemma surrounding surgical intervention in a patient with a complex medical background.

Ancient DNA evidence of Iberian lynx palaeoendemism

NASA Astrophysics Data System (ADS)

Rodríguez-Varela, Ricardo; Tagliacozzo, Antonio; Ureña, Irene; García, Nuria; Crégut-Bonnoure, Evelyne; Mannino, Marcello A.; Arsuaga, Juan Luis; Valdiosera, Cristina

2015-03-01

The Iberian lynx, endemic to the Iberian Peninsula, is the most threatened carnivore in Europe and the most endangered felid in the world. Widely distributed throughout Iberia during the Pleistocene and Holocene it is now confined to two small populations in southern Spain. Lynx species differentiation, based solely on morphological analysis from skeletal traits, is a difficult task and can potentially lead to misidentification. In order to verify whether Iberian lynx had a wider geographical distribution in the past, we successfully sequenced 152 base pairs (bp) of the cytochrome b gene and 183 bp of the mitochondrial control region in 20 Late Pleistocene and Holocene fossil remains of Lynx sp. from southern Europe. Our results confirm the presence of Iberian lynx outside the Iberian Peninsula demonstrating that this is a palaeoendemic species that had a wider distribution range in southern Europe during the Holocene and the Late Pleistocene. In addition, we documented the presence of both Palaearctic extant lynx species in the Arene Candide (north Italy) site during the Last Glacial Maximum.

The Downwind Hemisphere of the Heliosphere as Observed with IBEX-Lo from 2009 to 2015

NASA Astrophysics Data System (ADS)

Wurz, P.; Galli, A.; Schwadron, N.; Kucharek, H.; Moebius, E.; Bzowski, M.; Sokol, J. M.; Kubiak, M. A.; Funsten, H. O.; Fuselier, S. A.; McComas, D. J.

2017-12-01

The topic of this study is the vast region towards the tail of the heliosphere. To this end, we comprehensively analyzed energetic neutral hydrogen atoms (ENAs) of energies 10 eV to 2.5 keV from the downwind hemisphere of the heliosheath measured during the first 7 years of the IBEX (Interstellar Boundary Explorer) mission. Neutralized ions from the heliosheath (the region of slow solar wind plasma between termination shock and heliopause) can be remotely observed as ENAs down to 10 eV with the IBEX-Lo sensor onboard IBEX. This sensor covers those energies of the ion spectrum that dominate the total plasma pressure in the downwind region. So far, this region of the heliosphere has never been explored in-situ. Converting observations obtained near Earth orbit at these low energies to the original ion distributions in the heliocentric rest frame at 100 AU is very challenging, making the assessment of uncertainties and implicit assumptions crucial. From the maps of observed ENAs from the heliosheath and their uncertainties we derive observational constraints on heliospheric models for the downwind hemisphere. These constraints limit the possible range of 1) the distance of the termination shock, 2) the total plasma pressure across the termination shock, 3) the radial flow velocity of the heliosheath plasma, 4) the extinction length of said plasma, and finally 5) the dimension of the heliosheath in downwind directions. Because these parameters are coupled and because of observational limitations, we also need to characterize the degeneracy, i.e., the fact that different sets of parameters may reproduce the observations.

Resin glycoside constituents of Ipomoea pes-caprae (beach morning glory).

PubMed

Tao, Hongwen; Hao, Xiaojiang; Liu, Jinggen; Ding, Jian; Fang, Yuchun; Gu, Qianqun; Zhu, Weiming

2008-12-01

Eight new resin glycosides, pescapreins X-XVII (1-8), were isolated from a lipophilic fraction of an ethanol extract of the entire plant of beach morning glory, Ipomoea pes-caprae. Their structures were elucidated by spectroscopic data analysis and by chemical transformation. These compounds were evaluated biologically in terms of cancer cell line cytotoxicity, antibacterial and antifungal activity, and effects on the mu-opioid receptor.

PYCNOIB: Biodiversity and Biogeography of Iberian Pycnogonids

PubMed Central

Soler-Membrives, Anna; Munilla, Tomás

2015-01-01

Biodiversity and biogeographic studies comparing the distribution patterns of benthic marine organisms across the Iberian Atlantic and Mediterranean waters are scarce. The Pycnogonida (sea spiders) are a clear example of both endemicity and diversity, and are considered a key taxon to study and monitor biogeographic and biodiversity patterns. This is the first review that compiles data about abundance and diversity of Iberian pycnogonids and examines their biogeographic patterns and bathymetric constraints using GIS tools. A total of 17762 pycnogonid records from 343 localities were analyzed and were found to contain 65 species, 21 genera and 12 families. Achelia echinata and Ammothella longipes (family Acheliidae) were the most abundant comprising ~80% of the total records. The Acheliidae is also the most speciose in Iberian waters with 15 species. In contrast, the family Nymphonidae has 7 species but is significantly less abundant (<1% of the total records) than Acheliidae. Species accumulation curves indicate that further sampling would increase the number of Iberian species records. Current sampling effort suggests that the pycnogonid fauna of the Mediterranean region may be richer than that of the Atlantic. The Strait of Gibraltar and the Alboran Sea are recognized as species-rich areas that act as buffer zones between the Atlantic and Mediterranean boundaries. The deep waters surrounding the Iberian Peninsula are poorly surveyed, with only 15% of the sampling sites located below 1000 m. Further deep-water sampling is needed mainly on the Iberian Mediterranean side. PMID:25781483

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence.

PubMed

de la Fuente, José; Díez-Delgado, Iratxe; Contreras, Marinela; Vicente, Joaquín; Cabezas-Cruz, Alejandro; Tobes, Raquel; Manrique, Marina; López, Vladimir; Romero, Beatriz; Bezos, Javier; Dominguez, Lucas; Sevilla, Iker A; Garrido, Joseba M; Juste, Ramón; Madico, Guillermo; Jones-López, Edward; Gortazar, Christian

2015-11-01

Mycobacteria of the Mycobacterium tuberculosis complex (MTBC) greatly affect humans and animals worldwide. The life cycle of mycobacteria is complex and the mechanisms resulting in pathogen infection and survival in host cells are not fully understood. Recently, comparative genomics analyses have provided new insights into the evolution and adaptation of the MTBC to survive inside the host. However, most of this information has been obtained using M. tuberculosis but not other members of the MTBC such as M. bovis and M. caprae. In this study, the genome of three M. bovis (MB1, MB3, MB4) and one M. caprae (MB2) field isolates with different lesion score, prevalence and host distribution phenotypes were sequenced. Genome sequence information was used for whole-genome and protein-targeted comparative genomics analysis with the aim of finding correlates with phenotypic variation with potential implications for tuberculosis (TB) disease risk assessment and control. At the whole-genome level the results of the first comparative genomics study of field isolates of M. bovis including M. caprae showed that as previously reported for M. tuberculosis, sequential chromosomal nucleotide substitutions were the main driver of the M. bovis genome evolution. The phylogenetic analysis provided a strong support for the M. bovis/M. caprae clade, but supported M. caprae as a separate species. The comparison of the MB1 and MB4 isolates revealed differences in genome sequence, including gene families that are important for bacterial infection and transmission, thus highlighting differences with functional implications between isolates otherwise classified with the same spoligotype. Strategic protein-targeted analysis using the ESX or type VII secretion system, proteins linking stress response with lipid metabolism, host T cell epitopes of mycobacteria, antigens and peptidoglycan assembly protein identified new genetic markers and candidate vaccine antigens that warrant further study to

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence

PubMed Central

de la Fuente, José; Díez-Delgado, Iratxe; Contreras, Marinela; Vicente, Joaquín; Cabezas-Cruz, Alejandro; Tobes, Raquel; Manrique, Marina; López, Vladimir; Romero, Beatriz; Bezos, Javier; Dominguez, Lucas; Sevilla, Iker A.; Garrido, Joseba M.; Juste, Ramón; Madico, Guillermo; Jones-López, Edward; Gortazar, Christian

2015-01-01

Mycobacteria of the Mycobacterium tuberculosis complex (MTBC) greatly affect humans and animals worldwide. The life cycle of mycobacteria is complex and the mechanisms resulting in pathogen infection and survival in host cells are not fully understood. Recently, comparative genomics analyses have provided new insights into the evolution and adaptation of the MTBC to survive inside the host. However, most of this information has been obtained using M. tuberculosis but not other members of the MTBC such as M. bovis and M. caprae. In this study, the genome of three M. bovis (MB1, MB3, MB4) and one M. caprae (MB2) field isolates with different lesion score, prevalence and host distribution phenotypes were sequenced. Genome sequence information was used for whole-genome and protein-targeted comparative genomics analysis with the aim of finding correlates with phenotypic variation with potential implications for tuberculosis (TB) disease risk assessment and control. At the whole-genome level the results of the first comparative genomics study of field isolates of M. bovis including M. caprae showed that as previously reported for M. tuberculosis, sequential chromosomal nucleotide substitutions were the main driver of the M. bovis genome evolution. The phylogenetic analysis provided a strong support for the M. bovis/M. caprae clade, but supported M. caprae as a separate species. The comparison of the MB1 and MB4 isolates revealed differences in genome sequence, including gene families that are important for bacterial infection and transmission, thus highlighting differences with functional implications between isolates otherwise classified with the same spoligotype. Strategic protein-targeted analysis using the ESX or type VII secretion system, proteins linking stress response with lipid metabolism, host T cell epitopes of mycobacteria, antigens and peptidoglycan assembly protein identified new genetic markers and candidate vaccine antigens that warrant further study to

Flow of neutral interstellar helium into the heliosphere as inferred from IBEX-Lo observations and simulations

NASA Astrophysics Data System (ADS)

Bzowski, M.; Kubiak, M. A.; Hlond, M.; Moebius, E.; Leonard, T.; Heirtzler, D.; Kucharek, H.; Bochsler, P. A.; Schwadron, N. A.; Crew, G. B.; McComas, D. J.; Fuselier, S. A.

2010-12-01

Previously, a team coordinated through the International Space Science Institute (ISSI) examined direct neutral gas, pickup ion, and UV backscatter observations to produce consensus values for the inflow direction (λ, β), speed v, and temperature T of neutral interstellar helium from the Local Interstellar Cloud (LIC) with relatively small uncertainties. Since then, NASA’s Interstellar Boundary Explorer (IBEX) has started to provide new observations of the interstellar He flow in Earth orbit, with data currently available from the spring seasons of 2009 and 2010. Using a test-particle simulation to compute the spin-phase distributions that IBEX observes during each orbit, we optimize input LIC parameters to best fit the observations. The simulations take into account actual ionization rates as derived from solar EUV observations by SOHO CELIAS SEM, the OMNI solar wind data set, the positions and velocity vectors of the Earth during the actual integration intervals for each orbit, and the IBEX-Lo field-of-view. The simulations were performed on a grid of bulk flow vectors and temperatures, starting with the ISSI team consensus values based most heavily on Ulysses GAS observations (v = 26.4 km/s, T = 6318 K, and λ = 255.4o, β = -5.31o in J2000 coordinates). The Mach number of the flow derived from the IBEX observations is generally lower than derived from Ulysses measurements, which would be consistent with a higher temperature (up to 10 000 K) and/or a lower flow speed (down to ≈22.5 km/s) of the LIC. Based on these findings, the possible LIC parameter sets most probably lie within a narrow range between (λ = 255.4°, β = 5.3°, v = 26.4 km/s, M = 4.5 or T = 10,000 K) and (λ = 261.2°, β = 4.9, v = 23.05 km/s, M = 4.9, or T = 6300 K). At one end of the acceptable range, the parameters agree with the previous values except for the temperature, and at the other end, the temperatures agree, but the direction is different by almost 6° and the velocity is

Secondary Interstellar Oxygen in the Heliosphere: Numerical Modeling and Comparison with IBEX-Lo Data

NASA Astrophysics Data System (ADS)

Baliukin, I. I.; Izmodenov, V. V.; Möbius, E.; Alexashov, D. B.; Katushkina, O. A.; Kucharek, H.

2017-12-01

Quantitative analysis of the interstellar heavy (oxygen and neon) atom fluxes obtained by the Interstellar Boundary Explorer (IBEX) suggests the existence of the secondary interstellar oxygen component. This component is formed near the heliopause due to charge exchange of interstellar oxygen ions with hydrogen atoms, as was predicted theoretically. A detailed quantitative analysis of the fluxes of interstellar heavy atoms is only possible with a model that takes into account both the filtration of primary and the production of secondary interstellar oxygen in the boundary region of the heliosphere as well as a detailed simulation of the motion of interstellar atoms inside the heliosphere. This simulation must take into account photoionization, charge exchange with the protons of the solar wind and solar gravitational attraction. This paper presents the results of modeling interstellar oxygen and neon atoms through the heliospheric interface and inside the heliosphere based on a three-dimensional kinetic-MHD model of the solar wind interaction with the local interstellar medium and a comparison of these results with the data obtained on the IBEX spacecraft.

Carriage of Staphylococcus aureus by free-living wild animals in Spain.

PubMed

Porrero, M Concepción; Mentaberre, Gregorio; Sánchez, Sergio; Fernández-Llario, Pedro; Casas-Díaz, Encarna; Mateos, Ana; Vidal, Dolors; Lavín, Santiago; Fernández-Garayzábal, José-Francisco; Domínguez, Lucas

2014-08-01

The presence of methicillin-susceptible Staphylococcus aureus (MSSA) was analyzed in different free-living wild animals to assess the genetic diversity and predominant genotypes on each animal species. Samples were taken from the skin and/or nares, and isolates were characterized by spa typing, multilocus sequence typing (MLST) and antimicrobial susceptibility testing. The proportion of MSSA carriers were 5.00, 22.93, 19.78, and 17.67% in Eurasian griffon vulture, Iberian ibex, red deer, and wild boar, respectively (P = 0.057). A higher proportion of isolates (P = 0.000) were recovered from nasal samples (78.51%) than skin samples (21.49%), but the 9.26% of red deer and 18.25% of wild boar would have been undetected if only nasal samples had been tested. Sixty-three different spa types were identified, including 25 new spa types. The most common were t528 (43.59%) in Iberian ibex, t548 and t11212 (15.79% and 14.04%) in red deer, and t3750 (36.11%) in wild boar. By MLST, 27 STs were detected, of which 12 had not been described previously. The most frequent were ST581 for Iberian ibex (48.72%), ST425 for red deer (29.82%), and ST2328 for wild boar (42.36%). Isolates from Eurasian griffon vulture belong to ST133. Host specificity has been observed for the most frequent spa types and STs (P = 0.000). The highest resistance percentage was found against benzylpenicillin (average, 22.2%), although most of the S. aureus isolates were susceptible to all antimicrobial tested. Basically, MSSA isolates were different from those MRSA isolates previously detected in the same animal species. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Authentication of meat from game and domestic species by SNaPshot minisequencing analysis.

PubMed

La Neve, Fabio; Civera, Tiziana; Mucci, Nadia; Bottero, Maria Teresa

2008-10-01

The aim of the present study is to develop an assay for the specific identification of meat from Capreolus capreolus, Cervus elaphus, Capra ibex, Rupicapra rupicapra, targeting sequences of the cytochrome b (cyt b) gene of mitochondrial DNA. The assay is also intended to enable differentiation between meat from these wild species as well as Ovis aries, Capra hircus, Bubalus bubalis, Bos taurus and Sus scrofa domestic species. The primers used in the preliminary PCR were designed in well conserved regions upstream and downstream of the diagnosis sites. They successfully amplified a conserved 232bp region from the cyt b gene of all the species taken into consideration. The sites of diagnosis have been interrogated using a minisequencing reaction and capillary electrophoresis. All the results of the multiplex PER (primer extension reaction) test were confirmed by fragment sequencing. The assay offers the possibility of discriminating nine species at the same time.

Crustal parameters in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Banda, E.

1988-06-01

The structure of the crust in the Iberian Peninsula has been investigated for the last 15 years by Spanish and Portuguese groups in close collaboration with other European institutions. The first experiments were carried out in Portugal (Mueller et al., 1973) with the aim of investigating the crustal structure of the Hercynian belt in the southwest corner of the Iberian peninsula. Other experiments have been subsequently realized to study different aspects of the crust in various regions of Portugal. In Spain the main effort has been focused in Alpine areas, with the first experiments in the Alboran Sea and the Betic Cordilleras (Working Group for Deep Seismic Sounding in Spain, 1974-1975, 1977; Working Group for Deep Seismic Sounding in the Alboran Sea, 1974-1975, 1978). Follow-up experiments until 1981 completed the work in the Betic Cordillera. Extensive experiments were carried out in the Pyrenees in 1978. Further surveys covered the Balearic Islands in 1976, the Valencia Trough in 1976 and 1983, and the Celtiberian Chain (or Iberic system) in 1981. The Hercynian belt has only been studied in detail in the northwest corner of Spain in 1982, with smaller studies in the central Iberian Massif in 1976 and 1986. Mostaanpour (1984) has compiled some crustal parameters (crustal thickness, average crustal velocity and Pn velocity) for western Europe. Meanwhile, more complete data are available for the Iberian Peninsula. The results presented here were derived from a large number of seismic refraction experiments which have been carried out mostly along or close to coastal areas of the Iberian Peninsula. Offshore explosions of various sizes were used as the energy source in most cases, in addition to some quarry blasts. Unfortunately this leaves most of the inner part of the Iberian Peninsula unsurveyed. Our purpose is to summarize some of the crustal parameters obtained so far and to detail the appropriate literature for the interested reader.

Ultrasonic monitoring of Iberian fat crystallization during cold storage

NASA Astrophysics Data System (ADS)

Corona, E.; García-Pérez, J. V.; Santacatalina, J. V.; Peña, R.; Benedito, J.

2012-12-01

The aim of this work was to evaluate the use of ultrasonic measurements to characterize the crystallization process and to assess the textural changes of Iberian fat and Iberian ham during cold storage. The ultrasonic velocity was measured in two types of Iberian fats (Montanera and Cebo) during cold storage (0, 2, 5, 7 and 10 °C) and in vacuum packaged Iberian ham stored at 6°C for 120 days. The fatty acid profile, thermal behaviour and textural properties of fat were determined. The ultrasonic velocity and textural measurements showed a two step increase during cold storage, which was related with the separate crystallization of two fractions of triglycerides. It was observed that the harder the fat, the higher the ultrasonic velocity. Likewise, Cebo fat resulted harder than Montanera due to a higher content of saturated triglycerides. The ultrasonic velocity in Iberian ham showed an average increase of 55 m/s after 120 days of cold storage due to fat crystallization. Thus, non-destructive ultrasonic technique could be a reliable method to follow the crystallization of fats and to monitor the changes in the textural properties of Iberian ham during cold storage.

Long-Distance Dispersal by Sea-Drifted Seeds Has Maintained the Global Distribution of Ipomoea pes-caprae subsp. brasiliensis (Convolvulaceae)

PubMed Central

Miryeganeh, Matin; Takayama, Koji; Tateishi, Yoichi; Kajita, Tadashi

2014-01-01

Ipomoea pes-caprae (Convolvulaceae), a pantropical plant with sea-drifted seeds, is found globally in the littoral areas of tropical and subtropical regions. Unusual long-distance seed dispersal has been believed to be responsible for its extraordinarily wide distribution; however, the actual level of inter-population migration has never been studied. To clarify the level of migration among populations of I. pes-caprae across its range, we investigated nucleotide sequence variations by using seven low-copy nuclear markers and 272 samples collected from 34 populations that cover the range of the species. We applied coalescent-based approaches using Bayesian and maximum likelihood methods to assess migration rates, direction of migration, and genetic diversity among five regional populations. Our results showed a high number of migrants among the regional populations of I. pes-caprae subsp. brasiliensis, which suggests that migration among distant populations was maintained by long-distance seed dispersal across its global range. These results also provide strong evidence for recent trans-oceanic seed dispersal by ocean currents in all three oceanic regions. We also found migration crossing the American continents. Although this is an apparent land barrier for sea-dispersal, migration between populations of the East Pacific and West Atlantic regions was high, perhaps because of trans-isthmus migration via pollen dispersal. Therefore, the migration and gene flow among populations across the vast range of I. pes-caprae is maintained not only by seed dispersal by sea-drifted seeds, but also by pollen flow over the American continents. On the other hand, populations of subsp. pes-caprae that are restricted to only the northern part of the Indian Ocean region were highly differentiated from subsp. brasiliensis. Cryptic barriers that prevented migration by sea dispersal between the ranges of the two subspecies and/or historical differentiation that caused local adaptation

The Statistical Analysis of Global Oxygen ENAs Sky Maps from IBEX-Lo: Implication on the ENA sources

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Moebius, E.; Bochsler, P. A.

2013-12-01

Energetic Neutral Atoms (ENAs) created in the interstellar medium and heliospheric interface have been observed by the Interstellar Boundary Explorer (IBEX) orbiting the Earth on a highly elliptical trajectory since 2008. The science payload on this small spacecraft consists of two highly sensitive single-pixel ENA cameras: the IBEX-Lo sensor covering the energy ranges from 0.01 to 2 keV and the IBEX-Hi sensor covering the energy ranges from 0.3 to 6 keV. In order to measure the incident ENAs, the IBEX-Lo sensor uses a conversion surface to convert neutrals to negative ions. After passing an electrostatic analyzer, they are separated by species (H and heavier species) via a time-of-flight mass spectrometer. All-sky H ENA maps over three years were completed and show two significant features: the interstellar H and He neutral flow is shown at the low energy ranges (0.01 to 0.11 keV) and the ribbon appears at the higher energies (0.21 to 1.35 keV). Like in the hydrogen sky maps, the interstellar O+Ne neutral flow appears in all-sky O ENA maps at the energy ranges from 0.21 to 0.87 keV The distributed heliospheric Oxygen ENAs over the entire energy ranges is determined from very low counting statistics. In this study, we therefore apply the Cash's C statistics (Cash, 1979) and determine the upper and lower confidence limits (Gehrels, 1986) for the statistical significance among all events in all-sky O ENA maps. These newly created sky maps specifically show the distributed heliospheric O ENA flux surrounding the interstellar O+Ne neutral flow. This enhancement distributed ENA flux will provide us new insights into the ion population creation the ENA emission. It seems that there is no signature of ribbon in all-sky O ENA maps. If one assumes that the generation mechanism of the ribbon is the same for hydrogen and oxygen, the location of source ion population may be closer to the heliosheath. In this poster we will discuss all the results of this study and their

First report of a Staphylococcus caprae isolated from middle ear fluid of an infant with recurrent acute otitis media.

PubMed

Mazur, Elżbieta; Żychowski, Piotr; Juda, Marek; Korona-Głowniak, Izabela; Niedzielska, Grażyna; Malm, Anna; Kozioł-Montewka, Maria

2017-09-21

Staphylococcus caprae was originally isolated from goat milk. This uncommon coagulase-negative staphylococcus, usually associated with animals, has only infrequently been detected in human clinical specimens. Its association with acute otitis media has not been demonstrated so far. The study reports the first isolation of S. caprae from the middle ear fluid of a 12-month-old infant with recurrent, bilateral acute otitis media. Biochemical traits and susceptibility pattern of the isolated strain are also presented.

Drought variability and change across the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Coll, Joan Ramon; Aguilar, Enric

2015-04-01

Drought variability and change is assessed in this study across the Iberian Peninsula along the 20th century and the first decade of the 21st century using state of the art drought indices: the Sc-PDSI, the SPI and the SPEI. Daily temperature and precipitation data from 24 time-series regularly spread over Iberian Peninsula are quality controlled and also homogenized in a monthly scale to create the Monthly Iberian Temperature and Precipitation Series (MITPS) for the period 1906-2010. The Sc-PDSI, the 12-month SPI and 12-month SPEI are computed on a monthly basis using the newly MITPS dataset to identify dry and wet conditions across time. Precipitation data is only required to compute SPI, but potential evapotranspiration (PET) is also needed to perform the Sc-PDSI and SPEI, which is estimated using the Tornthwaite's method. The analysis conducted in this study confirms that drought conditions are worsening for most of the Iberian Peninsula across time strongly induced by global warming especially during the last three decades. All drought indices have found a drying trend in the Pyrenees, Ebro basin, central Iberia and in the south and south-eastern area while a wetting trend is identified in the western and in the north-western region. Future projections also indicate a clear increase in hydrological drought conditions along the 21st century, thus, water saving and the application of effective water management strategies will be crucial to minimize the impact of hydrological droughts over the Iberian Peninsula into the near future. KEY WORDS: Drought, climate change, Iberian Peninsula, drought indices.

Drought variability and change across the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Coll, J. R.; Aguilar, E.; Ashcroft, L.

2017-11-01

Drought variability and change was assessed across the Iberian Peninsula over more than 100 years expanding through the twentieth century and the first decade of the twenty-first century. Daily temperature and precipitation data from 24 Iberian time series were quality controlled and homogenized to create the Monthly Iberian Temperature and Precipitation Series (MITPS) for the period 1906-2010. The Standardized Precipitation Index (SPI), driven only by precipitation, and the Standardized Precipitation Evapotranspiration Index (SPEI), based on the difference between the precipitation and the reference evapotranspiration (ET0), were computed at annual and seasonal scale to describe the evolution of droughts across time. The results confirmed that a clear temperature increase has occurred over the entire Iberian Peninsula at the annual and seasonal scale, but no significant changes in precipitation accumulated amounts were found. Similar drought variability was provided by the SPI and SPEI, although the SPEI showed greater drought severity and larger surface area affected by drought than SPI from 1980s to 2010 due to the increase in atmospheric evaporative demand caused by increased temperatures. Moreover, a clear drying trend was found by the SPEI for most of the Iberian Peninsula at annual scale and also for spring and summer, although the SPI did not experience significant changes in drought conditions. From the drying trend identified for most of the Iberian Peninsula along the twentieth century, an increase in drought conditions can also be expected for this region in the twenty-first century according to future climate change projections and scenarios.

Pentasaccharide resin glycosides from Ipomoea pes-caprae.

PubMed

Yu, Bang-Wei; Luo, Jian-Guang; Wang, Jun-Song; Zhang, Dong-Ming; Yu, Shi-Shan; Kong, Ling-Yi

2011-04-25

Pescapreins XXI-XXX (1-10), pentasaccharide resin glycosides, together with the known pescapreins I-IV and stoloniferin III were isolated from the aerial parts of Ipomoea pes-caprae (beach morning-glory). The pescapreins are macrolactones of simonic acid B, partially esterified with different fatty acids. The lactonization site of the aglycone, jalapinolic acid, was located at C-2 or C-3 of the second saccharide moiety. Their structures were established by a combination of spectroscopic and chemical methods. Compounds 1-10 were evaluated for their potential to modulate multidrug resistance in the human breast cancer cell line MCF-7/ADR. The combined use of these new compounds at a concentration of 5 μg/mL increased the cytotoxicity of doxorubicin by 1.5-3.7-fold.

Inactivation of Mycobacterium bovis ssp. caprae in high-temperature, short-term pasteurized pilot-plant milk.

PubMed

Hammer, P; Richter, E; Rüsch-Gerdes, S; Walte, H-G C; Matzen, S; Kiesner, C

2015-03-01

Experiments to determine the efficacy of high temperature, short time (HTST) pasteurization of milk in terms of inactivation of pathogenic microorganisms were mainly performed between 1930 and 1960. Among the target organisms were Mycobacterium bovis and Mycobacterium tuberculosis. As a result, the Codex Alimentarius prescribes that HTST treatment of milk should lead to a significant reduction of pathogenic microorganisms during milk pasteurization. Due to the development of improved methods for the detection of survivors and of more advanced heating technology, verification of this requirement seemed to be necessary. To address recent outbreaks of tuberculosis in cattle caused by M. bovis ssp. caprae (M. caprae) in the southern regions of Germany, this organism was tested and compared with M. bovis ssp. bovis (M. bovis). Experiments were performed in a pilot plant for HTST pasteurization of milk with 3 strains of M. caprae and 1 strain of M. bovis. In preliminary trials at a fixed holding time of 25 s, the temperature at which significant inactivation occurred was 62.5°C for all strains. To determine D-values (decimal reduction times) for the inactivation kinetics, the strains were tested at 65, 62.5, and 60°C at holding times of 16.5, 25, and 35 s. At 65°C, the D-values of all strains ranged from 6.8 to 7.8 s, and at 62.5°C, D-values ranged from 14.5 to 18.1 s. Low inactivation was observed at 60°C. When the low slope of the inactivation curve allowed calculation of a D-value, these ranged from 40.8 to 129.9 s. In terms of log10 reductions, the highest values for all strains were 4.1 to 4.9 log at 65°C, with a holding time of 35 s. The tested strains of M. caprae and M. bovis showed similar low resistance to heat. Standard HTST treatment should result in a high reduction of these organisms and thus the requirements of the Codex Alimentarius for inactivation of pathogens by this process are far exceeded. Copyright © 2015 American Dairy Science Association

Imprint of the Sun’s Evolving Polar Winds on IBEX Energetic Neutral Atom All-sky Observations of the Heliosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; McComas, D. J.; Dayeh, M. A.

2017-09-01

With 7 years of Interstellar Boundary Explorer ( IBEX ) measurements of energetic neutral atoms (ENAs), IBEX has shown a clear correlation between dynamic changes in the solar wind and the heliosphere’s response in the formation of ENAs. In this paper, we investigate temporal variations in the latitudinal-dependent ENA spectrum from IBEX and their relationship to the solar wind speed observed at 1 au. We find that the variation in latitude of the transition in ENA spectral indices between low (≲1.8) and high (≳1.8) values, as well as the distribution of ENA spectral indices at high and low latitudes, correlatesmore » well with the evolution of the fast and slow solar wind latitudinal structure observed near 1 au. This correlation includes a delay due to the time it takes the solar wind to propagate to the termination shock and into the inner heliosheath, and for ENAs to be generated via charge-exchange and travel back toward 1 au. Moreover, we observe a temporal asymmetry in the steepening of the ENA spectrum in the northern and southern hemispheres, consistent with asymmetries observed in the solar wind and polar coronal holes. While this asymmetry is observed near the upwind direction of the heliosphere, it is not yet observed in the tail direction, suggesting a longer line-of-sight integration distance or different processing of the solar wind plasma downstream of the termination shock.« less

Mitochondrial haplotype variation and phylogeography of Iberian brown trout populations.

PubMed

MacHordom, A; Suárez, J; Almodóvar, A; Bautista, J M

2000-09-01

The biogeographical distribution of brown trout mitochondrial DNA haplotypes throughout the Iberian Peninsula was established by polymerase chain reaction-restriction fragment polymorphism analysis. The study of 507 specimens from 58 localities representing eight widely separated Atlantic-slope (north and west Iberian coasts) and six Mediterranean drainage systems served to identify five main groups of mitochondrial haplotypes: (i) haplotypes corresponding to non-native, hatchery-reared brown trout that were widely distributed but also found in wild populations of northern Spain (Cantabrian slope); (ii) a widespread Atlantic haplotype group; (iii) a haplotype restricted to the Duero Basin; (iv) a haplotype shown by southern Iberian populations; and (v) a Mediterranean haplotype. The Iberian distribution of these haplotypes reflects both the current fishery management policy of introducing non-native brown trout, and Messinian palaeobiogeography. Our findings complement and extend previous allozyme studies on Iberian brown trout and improve present knowledge of glacial refugia and postglacial movement of brown trout lineages.

SYMMETRY OF THE IBEX RIBBON OF ENHANCED ENERGETIC NEUTRAL ATOM (ENA) FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Funsten, H. O.; Cai, D. M.; Higdon, D. M.

2015-01-20

The circular ribbon of enhanced energetic neutral atom (ENA) emission observed by the Interstellar Boundary Explorer (IBEX) mission remains a critical signature for understanding the interaction between the heliosphere and the interstellar medium. We study the symmetry of the ribbon flux and find strong, spectrally dependent reflection symmetry throughout the energy range 0.7-4.3 keV. The distribution of ENA flux around the ribbon is predominantly unimodal at 0.7 and 1.1 keV, distinctly bimodal at 2.7 and 4.3 keV, and a mixture of both at 1.7 keV. The bimodal flux distribution consists of partially opposing bilateral flux lobes, located at highest and lowest heliographic latitude extentsmore » of the ribbon. The vector between the ribbon center and heliospheric nose (which defines the so-called BV plane) appears to play an organizing role in the spectral dependence of the symmetry axis locations as well as asymmetric contributions to the ribbon flux. The symmetry planes at 2.7 and 4.3 keV, derived by projecting the symmetry axes to a great circle in the sky, are equivalent to tilting the heliographic equatorial plane to the ribbon center, suggesting a global heliospheric ordering. The presence and energy dependence of symmetric unilateral and bilateral flux distributions suggest strong spectral filtration from processes encountered by an ion along its journey from the source plasma to its eventual detection at IBEX.« less

Indeterministic metaphors: The popular science books of Fritjof Capra and Gary Zukav.

PubMed

Smith, Bradon Tl

2013-07-01

In the popular accounts of the new physics (i.e. relativity and quantum mechanics) by Fritjof Capra and Gary Zukav, the new physics is represented as fatally undermining the universal determinism associated with Newton and Laplace. This paper explores how different metaphors - anthropomorphic metaphors, metaphors of exploration and mapping, and metaphors of shadows - are used strategically by these writers to advance this characterisation of the new physics as indeterministic.

Theorizing Iberian Studies

ERIC Educational Resources Information Center

Newcomb, Robert Patrick

2015-01-01

A growing number of scholars invested in Iberian Studies are asking how peninsular literary and cultural studies might be reimagined, and reinvigorated, by placing the Spanish and Portuguese canons into critical dialogue with each other, and with Galician, Catalan, Basque/Euskadi, and Latin American and North African immigrant writers, cultural…

Limited improvement of incorporating primary circulating prostate cells with the CAPRA score to predict biochemical failure-free outcome of radical prostatectomy for prostate cancer.

PubMed

Murray, Nigel P; Aedo, Socrates; Fuentealba, Cynthia; Jacob, Omar; Reyes, Eduardo; Novoa, Camilo; Orellana, Sebastian; Orellana, Nelson

2016-10-01

To establish a prediction model for early biochemical failure based on the Cancer of the Prostate Risk Assessment (CAPRA) score, the presence or absence of primary circulating prostate cells (CPC) and the number of primary CPC (nCPC)/8ml blood sample is detected before surgery. A prospective single-center study of men who underwent radical prostatectomy as monotherapy for prostate cancer. Clinical-pathological findings were used to calculate the CAPRA score. Before surgery blood was taken for CPC detection, mononuclear cells were obtained using differential gel centrifugation, and CPCs identified using immunocytochemistry. A CPC was defined as a cell expressing prostate-specific antigen and P504S, and the presence or absence of CPCs and the number of cells detected/8ml blood sample was registered. Patients were followed up for up to 5 years; biochemical failure was defined as a prostate-specific antigen>0.2ng/ml. The validity of the CAPRA score was calibrated using partial validation, and the fractional polynomial Cox proportional hazard regression was used to build 3 models, which underwent a decision analysis curve to determine the predictive value of the 3 models with respect to biochemical failure. A total of 267 men participated, mean age 65.80 years, and after 5 years of follow-up the biochemical-free survival was 67.42%. The model using CAPRA score showed a hazards ratio (HR) of 5.76 between low and high-risk groups, that of CPC with a HR of 26.84 between positive and negative groups, and the combined model showed a HR of 4.16 for CAPRA score and 19.93 for CPC. Using the continuous variable nCPC, there was no improvement in the predictive value of the model compared with the model using a positive-negative result of CPC detection. The combined CAPRA-nCPC model showed an improvement of the predictive performance for biochemical failure using the Harrell׳s C concordance test and a net benefit on DCA in comparison with either model used separately. The use of

Bacteriological diagnosis and molecular strain typing of Mycobacterium bovis and Mycobacterium caprae.

PubMed

Gormley, E; Corner, L A L; Costello, E; Rodriguez-Campos, S

2014-10-01

The primary isolation of a Mycobacterium sp. of the Mycobacterium tuberculosis complex from an infected animal provides a definitive diagnosis of tuberculosis. However, as Mycobacterium bovis and Mycobacterium caprae are difficult to isolate, particularly for animals in the early stages of disease, success is dependent on the optimal performance of all aspects of the bacteriological process, from the initial choice of tissue samples at post-mortem examination or clinical samples, to the type of media and conditions used to cultivate the microorganism. Each step has its own performance characteristics, which can contribute to sensitivity and specificity of the procedure, and may need to be optimized in order to achieve the gold standard diagnosis. Having isolated the slow-growing mycobacteria, species identification and fine resolution strain typing are keys to understanding the epidemiology of the disease and to devise strategies to limit transmission of infection. New technologies have emerged that can now even discriminate different isolates from the same animal. In this review we highlight the key factors that contribute to the accuracy of bacteriological diagnosis of M. bovis and M. caprae, and describe the development of advanced genotyping techniques that are increasingly used in diagnostic laboratories for the purpose of supporting detailed epidemiological investigations. Copyright © 2014 Elsevier Ltd. All rights reserved.

Biology and impacts of Pacific island invasive species: Capra hircus, the feral goat, (Mammalia: Bovidae)

Treesearch

Mark W. Chynoweth; Creighton M. Litton; Christopher A. Lepczyk; Steven C. Hess; Susan Cordell

2013-01-01

Domestic goats, Capra hircus, were intentionally introduced to numerous oceanic islands beginning in the sixteenth century. The remarkable ability of C. hircus to survive in a variety of conditions has enabled this animal to become feral and impact native ecosystems on islands throughout the world. Direct ecological impacts...

Experimental Model of Tuberculosis in the Domestic Goat after Endobronchial Infection with Mycobacterium caprae ▿

PubMed Central

Pérez de Val, Bernat; López-Soria, Sergio; Nofrarías, Miquel; Martín, Maite; Vordermeier, H. Martin; Villarreal-Ramos, Bernardo; Romera, Nadine; Escobar, Manel; Solanes, David; Cardona, Pere-Joan; Domingo, Mariano

2011-01-01

Caprine tuberculosis (TB) has increased in recent years, highlighting the need to address the problem the infection poses in goats. Moreover, goats may represent a cheaper alternative for testing of prototype vaccines in large ruminants and humans. With this aim, a Mycobacterium caprae infection model has been developed in goats. Eleven 6-month-old goats were infected by the endobronchial route with 1.5 × 103 CFU, and two other goats were kept as noninfected controls. The animals were monitored for clinical and immunological parameters throughout the experiment. After 14 weeks, the goats were euthanized, and detailed postmortem analysis of lung lesions was performed by multidetector computed tomography (MDCT) and direct observation. The respiratory lymph nodes were also evaluated and cultured for bacteriological analysis. All infected animals were positive in a single intradermal comparative cervical tuberculin (SICCT) test at 12 weeks postinfection (p.i.). Gamma interferon (IFN-γ) antigen-specific responses were detected from 4 weeks p.i. until the end of the experiment. The humoral response to MPB83 was especially strong at 14 weeks p.i. (13 days after SICCT boost). All infected animals presented severe TB lesions in the lungs and associated lymph nodes. M. caprae was recovered from pulmonary lymph nodes in all inoculated goats. MDCT allowed a precise quantitative measure of TB lesions. Lesions in goats induced by M. caprae appeared to be more severe than those induced in cattle by M. bovis over a similar period of time. The present work proposes a reliable new experimental animal model for a better understanding of caprine tuberculosis and future development of vaccine trials in this and other species. PMID:21880849

Immunogenetic and population genetic analyses of Iberian cattle.

PubMed

Kidd, K K; Stone, W H; Crimella, C; Carenzi, C; Casati, M; Rognoni, G

1980-01-01

Blood samples were collected from more than 100 animals in each of 2 Spanish cattle breeds (Retinto and De Lidia), 2 Portuguese breeds (Alentejana and Mertolenga), and American Longhorn cattle. All samples for the 4 Iberian breeds were tested for 20 polymorphic systems; American Longhorn were tested for 19 of the 20. For each breed an average inbreeding coefficient was estimated by a comparison of the observed and expected heterozygosity at 7 or 8 codominant systems tested. All breeds had positive values but only 3 breeds had estimates of inbreeding that were statistically significantly different from 0: De Lidia with f = 0.17, Retinto with f = 0.08 and Mertolenga with f = 0.05. The De Lidia breed especially may be suffering from inbreeding depression since this high value is greater than expected if all of the animals were progeny of half-sib matings. Genetic distances were calculated from the gene frequency data on these 5 breeds plus 9 other European breeds. Analyses of these distances show a closely related group of the 4 Iberian breeds and American Longhorn, confirming the close relationships among the Iberian breeds and the Iberian, probably Portuguese, origin of American Longhorn cattle.

Characterization of the Iberian Y chromosome haplogroup R-DF27 in Northern Spain.

PubMed

Villaescusa, Patricia; Illescas, María José; Valverde, Laura; Baeta, Miriam; Nuñez, Carolina; Martínez-Jarreta, Begoña; Zarrabeitia, Maria Teresa; Calafell, Francesc; de Pancorbo, Marian M

2017-03-01

The European paternal lineage R-DF27 has been proposed as a haplogroup of Iberian origin due to its maximum frequencies in the Iberian Peninsula. In this study, the distribution and structure of DF27 were characterized in 591 unrelated male individuals from four key populations of the north area of the Iberian Peninsula through the analysis of 12 Y-SNPs that define DF27 main sublineages. Additionally, Y-SNP allele frequencies were also gathered from the reference populations in the 1000 Genomes Project to compare and obtain a better landscape of the distribution of DF27. Our results reveal frequencies over 35% of DF27 haplogroup in the four North Iberian populations analyzed and high frequencies for its subhaplogroups. Considering the low frequency of DF27 and its sublineages in most populations outside of the Iberian Peninsula, this haplogroup seems to have geographical significance; thus, indicating a possible Iberian patrilineal origin of vestiges bearing this haplogroup. The dataset presented here contributes with new data to better understand the complex genetic variability of the Y chromosome in the Iberian Peninsula, that can be applied in Forensic Genetics. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Seroprevalence of Toxoplasma gondii in Iberian pig sows.

PubMed

Pablos-Tanarro, Alba; Ortega-Mora, Luis Miguel; Palomo, Antonio; Casasola, Francisco; Ferre, Ignacio

2018-05-01

The objective of the present study was to investigate the seroprevalence of Toxoplasma gondii infection in Iberian sows reared in extensive and intensive management conditions and to compare two serologic techniques used for diagnosis. In addition, some possible risk factors associated with the presence of serum antibodies to T. gondii were also studied. Serum samples were collected from 2492 Iberian sows on 14 pig farms. Three types of management systems were included, traditional extensive outdoor farms (five farms), intensive farms with outdoor access (n = 4), and conventional intensive indoor farms (n = 5). The presence of serum antibodies to T. gondii was evaluated by two commercially available tests: an indirect enzyme-linked immunosorbent assay (ELISA) and a direct agglutination test (DAT). Serum antibodies against T. gondii were detected in 237 sows (9.5%) by at least one of the techniques used. The mean seroprevalence of toxoplasmosis in Iberian sows was 5.8% by ELISA and 8.9% by DAT. An agreement kappa-value of 0.68 (95%, CI = 0.63-0.74) was found between both tests. The results from this study suggest that the prevalence of T. gondii antibodies among Iberian sows seems to be moderate-low. The presence of serum antibodies against T. gondii in Iberian sows was associated to an extensive management system and low-level facilities of the farm, sow number (> 1000 animals), presence of cats, absence of rodent control and bird-proof nets in windows, well-water source, feed sources and storage (from the same farm and not stored in silo), absence of fences, and low farm worker qualification.

Fatty acid profiles of Garuga floribunda, Ipomoea pes-caprae, Melanolepis multiglandulosa and Premna odorata seed oils

USDA-ARS?s Scientific Manuscript database

The fatty acid profiles of the seed oils of four species from four plant families for which no or only sparse information on the fatty acid profiles is available are reported. The five seed oils are Garuga floribunda of the Burseraceae family, Ipomoea pes-caprae of the Convolvulaceae family, Melanol...

IBEX-Lo Observations of Secondary Interstellar Helium and Oxygen Distributions

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Moebius, E.; Kubiak, M. A.; Bzowski, M.; Galli, A.; McComas, D. J.

2015-12-01

Observations of the Interstellar Boundary EXplorer (IBEX) show, among other features, the pristine interstellar neutral gas flow and additional populations associated with neutral helium and oxygen. Kubiak et al. (2014, ApJS, 213, 29) discovered the "Warm Breeze", or additional He component, which is slower and warmer than the primary interstellar He population and its flow direction differs by about 19° from the interstellar neutral (ISN) flow. Park et al. (2015, ApJS, In Press) studied the combined count rate maps of heavy neutral atoms with three statistical analysis methods and found an extended tail of the ISN O flow, centered around 190° in ecliptic longitude and +15° in ecliptic latitude, or approximately 38° from the ISN O and Ne flow peak. The most likely sources for the Warm Breeze and the extended O tail may be secondary populations of interstellar He and O, created by charge exchange between ISN atoms and interstellar ions in the outer heliosheath. The charge exchange between interstellar He atoms and He+ ions is the most important reaction to generate the secondary neutral He in the outer heliosheath, with a reaction rate of 1.7×10-10 s-1 and a mean free path of ~950 AU. For O+, the charge exchange with interstellar H atoms with a rate ~1.0×10-9 s-1 and a mean free path of ~100 AU is most important. Because the differences in the reaction rates and atomic masses for He and O result in different velocity distributions in the outer heliosheath, the directional distributions of these populations at Earth orbit are not identical. In this study, we use the IBEX flux maps of the observed helium and oxygen atoms to compare their directional distributions. These observed distributions may provide constraints and information to improve our current understanding of the interactions in the outer heliosheath.

Distribution of Flower Morphs, Ploidy Level and Sexual Reproduction of the Invasive Weed Oxalis pes-caprae in the Western Area of the Mediterranean Region

PubMed Central

Castro, Sílvia; Loureiro, João; Santos, Conceição; Ater, Mohammed; Ayensa, Garbiñe; Navarro, Luis

2007-01-01

Background and Aims Oxalis pes-caprae is a widespread invasive weed in regions with a Mediterranean climate. In its native habitat (southern Africa) this species has been reported as heterostylous with trimorphic flowers and a self- and morph-incompatible reproductive system. In most of the areas invaded, only a pentaploid short-styled morphotype that reproduces mainly asexually by bulbils is reported, but this has only been confirmed empirically. This study aims to analyse the floral morph proportions in a wide distribution area, test the sexual female success, and explain the causes of low sexual reproduction of this species in the western area of the Mediterranean Basin. Methods Fifty-five populations of O. pes-caprae were sampled in the Iberian Peninsula and Morocco to evaluate the floral morph ratio and individual fruit set. In plants from a dimorphic population, hand-pollination experiments were performed to evaluate the effect of the pollen source on pollen tube growth through the style. The ploidy level and genome size of individuals of each floral morph were analysed using flow cytometry. Key Results From the populations studied 89·1 % were monomorphic, with most of them containing the short-styled (SS) floral morph, and 10·9 % were dimorphic containing long-styled (LS) and SS morphs. In some of these, isoplethy was verified but no fruit production was observed in any population. A sterile form was also recorded in several populations. Hand-pollination experiments revealed that pollen grains germinated over recipient stigmas. In intermorph crossings, pollen tubes were able to develop and fruit initiation was observed in some cases, while in intramorph pollinations, pollen tube development was sporadic and no fruit initiation was observed. All individuals within each floral form presented the same DNA ploidy level: SS plants were pentaploid and LS and the sterile form were tetraploid. Conclusions The low or null sexual reproduction success of this

A Two-Years' Survey on the Prevalence of Tuberculosis Caused by Mycobacterium caprae in Red Deer (Cervus elaphus) in the Tyrol, Austria

PubMed Central

Schoepf, Karl; Prodinger, Wolfgang M.; Glawischnig, Walter; Hofer, Erwin; Revilla-Fernandez, Sandra; Hofrichter, Johannes; Fritz, Johannes; Köfer, Josef; Schmoll, Friedrich

2012-01-01

A survey of 143 hunter-harvested red deer for tuberculosis was conducted in an Alpine area in Western Austria over two subsequent years. There, single tuberculosis cases caused by Mycobacterium caprae had been detected in cattle and red deer over the preceding decade. The area under investigation covered approximately 500 km2, divided into five different hunting plots. Lymph nodes of red deer were examined grossly and microscopically for typical tuberculosis-like lesions and additionally by microbiological culturing. Executing a detailed hunting plan, nine M. caprae isolates were obtained. Six out of nine originated from one single hunting plot with the highest estimated prevalence of tuberculosis, that is, 23.1%. All isolates were genotyped by mycobacterial interspersed repetitive unit—variable number of tandem repeat (MIRU-VNTR) typing of 24 standard loci plus VNTR 1982. All nine isolates belonged to a single cluster termed “Lechtal” which had been found in cattle and red deer in the region, demonstrating a remarkable dominance and stability over ten years. This is the first report on a systematic prospective study investigating the prevalence and strain variability of M. caprae infection in red deer in Austria and in the Alpine countries. PMID:23762580

The Cancer of the Prostate Risk Assessment (CAPRA) score predicts biochemical recurrence in intermediate-risk prostate cancer treated with external beam radiotherapy (EBRT) dose escalation or low-dose rate (LDR) brachytherapy.

PubMed

Krishnan, Vimal; Delouya, Guila; Bahary, Jean-Paul; Larrivée, Sandra; Taussky, Daniel

2014-12-01

To study the prognostic value of the University of California, San Francisco Cancer of the Prostate Risk Assessment (CAPRA) score to predict biochemical failure (bF) after various doses of external beam radiotherapy (EBRT) and/or permanent seed low-dose rate (LDR) prostate brachytherapy (PB). We retrospectively analysed 345 patients with intermediate-risk prostate cancer, with PSA levels of 10-20 ng/mL and/or Gleason 7 including 244 EBRT patients (70.2-79.2 Gy) and 101 patients treated with LDR PB. The minimum follow-up was 3 years. No patient received primary androgen-deprivation therapy. bF was defined according to the Phoenix definition. Cox regression analysis was used to estimate the differences between CAPRA groups. The overall bF rate was 13% (45/345). The CAPRA score, as a continuous variable, was statistically significant in multivariate analysis for predicting bF (hazard ratio [HR] 1.37, 95% confidence interval [CI] 1.10-1.72, P = 0.006). There was a trend for a lower bF rate in patients treated with LDR PB when compared with those treated by EBRT ≤ 74 Gy (HR 0.234, 95% CI 0.05-1.03, P = 0.055) in multivariate analysis. In the subgroup of patients with a CAPRA score of 3-5, CAPRA remained predictive of bF as a continuous variable (HR 1.51, 95% CI 1.01-2.27, P = 0.047) in multivariate analysis. The CAPRA score is useful for predicting biochemical recurrence in patients treated for intermediate-risk prostate cancer with EBRT or LDR PB. It could help in treatment decisions. © 2013 The Authors. BJU International © 2013 BJU International.

Ancient origin of endemic Iberian earth-boring dung beetles (Geotrupidae).

PubMed

Cunha, Regina L; Verdú, José R; Lobo, Jorge M; Zardoya, Rafael

2011-06-01

The earth-boring dung beetles belong to the family Geotrupidae that includes more than 350 species classified into three subfamilies Geotrupinae, Lethrinae, and Taurocerastinae, mainly distributed across temperate regions. Phylogenetic relationships within the family are based exclusively on morphology and remain controversial. In the Iberian Peninsula there are 33 species, 20 of them endemic, which suggests that these lineages might have experienced a radiation event. The evolution of morphological adaptations to the Iberian semi-arid environments such as the loss of wings (apterism) or the ability to exploit alternative food resources is thought to have promoted diversification. Here, we present a phylogenetic analysis of 31 species of Geotrupidae, 17 endemic to the Iberian Peninsula, and the remaining from southeastern Europe, Morocco, and Austral South America based on partial mitochondrial and nuclear gene sequence data. The reconstructed maximum likelihood and Bayesian inference phylogenies recovered Geotrupinae and Lethrinae as sister groups to the exclusion of Taurocerastinae. Monophyly of the analyzed geotrupid genera was supported but phylogenetic relationships among genera were poorly resolved. Ancestral character-state reconstruction of wing loss evolution, dating, and diversification tests altogether showed neither evidence of a burst of cladogenesis of the Iberian Peninsula group nor an association between apterism and higher diversification rates. Loss of flight did not accelerate speciation rates but it was likely responsible for the high levels of endemism of Iberian geotrupids by preventing their expansion to central Europe. These Iberian flightless beetle lineages are probably paleoendemics that have survived since the Tertiary in this refuge area during Plio-Pleistocene climatic fluctuations by evolving adaptations to arid and semi-arid environments. Copyright © 2011 Elsevier Inc. All rights reserved.

Southern dispersal and Palaeoecological implications of woolly rhinoceros ( Coelodonta antiquitatis): review of the Iberian occurrences

NASA Astrophysics Data System (ADS)

Álvarez-Lao, Diego J.; García, Nuria

2011-07-01

Cold-adapted large mammal populations spread southward during the coldest and driest phases of the Late Pleistocene reaching the Iberian Peninsula. Presence of woolly rhinoceros ( Coelodonta antiquitatis) can be identified from 23 Iberian sites, which is compiled and analyzed herein, and the fossil specimens from seven of these sites are described here for first time. Morphological and biometrical analyses demonstrate that the Iberian woolly rhinoceros did not significantly differ from individuals of other European populations, but represent the westernmost part of a continuous Eurasian belt of distribution. The first presence of woolly rhino in the Iberian Peninsula has been identified during the late Middle Pleistocene and early Late Pleistocene. However, the highest abundance of this species is recorded during MIS 3 and 2. The latest Iberian occurrences can be dated around 20 ka BP. The presence of woolly rhinoceros in the Iberian Peninsula correlates with periods of extreme dry and cold climatic conditions documented in Iberian terrestrial and marine sediment sequences. From a palaeobiogeographic point of view, the maximum southern spread of C. antiquitatis on the Iberian Peninsula was registered during the late Middle Pleistocene or early Late Pleistocene, reaching the latitude of Madrid (about 40°N). Subsequently, during MIS 3 and 2, all Iberian finds were restricted to the Northern regions of Iberia (Cantabrian area and Catalonia). The southern expansion of C. antiquitatis during the Late Pleistocene in the Iberian Peninsula reached similar latitudes to other Eurasian regions. The ecological composition of fossil assemblages with presence of woolly rhinoceros was statistically analyzed. Results show that temperate ungulate species are predominant at Iberian assemblages, resulting in a particular mixture of temperate and cold elements different of the typical Eurasian cold-adapted faunal associations. This particular situation suggests two possible

SPECTRAL PROPERTIES OF {approx}0.5-6 keV ENERGETIC NEUTRAL ATOMS MEASURED BY THE INTERSTELLAR BOUNDARY EXPLORER (IBEX) ALONG THE LINES OF SIGHT OF VOYAGER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Desai, M. I.; Allegrini, F. A.; Dayeh, M. A.

2012-04-20

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. Here we survey the fluxes, energy spectra, and energy dependence of the spectral indices of {approx}0.5-6 keV ENAs measured by IBEX-Hi along the lines of sight of Voyager 1 and 2. We compare the ENA spectra observed at IBEX with predictions of Zank et al. who modeled the microphysics of the heliospheric termination shock to predict the shape and relative contributions of three distinct heliosheath ion populations. We show thatmore » (1) the ENA spectral indices exhibit similar energy dependence along V1 and V2 directions-the spectrum hardens to {gamma} {approx} 1 between {approx}1 and 2 keV and softens to {gamma} {approx} 2 below {approx}1 keV and above {approx}2 keV, (2) the observed ENA fluxes agree to within {approx}50% of the Zank et al. predictions and are unlikely to be produced by core solar wind (SW) ions, and (3) the ENA spectra do not exhibit sharp cutoffs at {approx}twice the SW speed as is typically observed for shell-like pickup ion (PUI) distributions in the heliosphere. We conclude that ENAs at IBEX are generated by at least two types of ion populations whose relative contributions depend on the ENA energy: transmitted PUIs in the {approx}0.5-5 keV energy range and reflected PUIs above {approx}5 keV energy. The {approx}0.5-5 keV PUI distribution is probably a superposition of Maxwellian or kappa distributions and partially filled shell distributions in velocity space.« less

Seismic Reflection Transect across the Central Iberian Zone (Iberian Massif): The ALCUDIA project

NASA Astrophysics Data System (ADS)

Carbonell, R.; Simancas, F.; Martinez-Poyatos, D.; Ayarza, P.; Gonzalez, P.; Tejero, R.; Martín-Parra, L.; Matas, J.; Gonzalez-Lodeiro, F.; Pérez-Estaún, A.; García-Lobon, J.; Mansilla, L.; Palomeras, I.

2007-12-01

The lithosphere of the Central Iberian Zone (CIZ) differs from that of the southwestern Iberian Massif. They are limited by a suture zone. The seismic reflection profile IBERSEIS suggested that the activity of a Carboniferous mantle plume resulted in abundant intrusions of mafic magmas in the mid-to-lower crust which resulted in a singular crustal evolution. The current knowledge of the area based mostly in surface geological mapping suggests that basic magmatism continues further towards the north, indicating that the mantle plume may have affected a bigger area up to the Tajo depression. Furthermore, the existence of the Almadén mine, one of the largest mercury mine in the world within the CIZ, favour that the crust in this area is the result of anomalous lithospheric processes. Accordingly, the ALCUDIA project has been lauched aiming to study the structure and nature of the lithosphere of the CIZ. It includes the acquisition of a deep high resolution seismic reflection transect, detailed geological mapping, kinematic, petrologic and geochemical studies, and other geophysical studies (potential field methods). This new profile extends the previous IBERSEIS Transect towards the northeast, completing almost 600 km of deep seismic profiles, crossing the southern half of the Iberian Variscides. The transect crosses some important structures, such as the Toledo fault, Santa Elena Fault, Alcudia anticline, Almadén syncline, and some major magnetic anomalies. The preliminary results reveal that the crust is 30 km thick in average, with a horizontal Moho, a highly reflective mid-to-lower crust with a few mantle reflectors and well defined features in the upper crust with the indication of detachments zones that might link to the mid- crustal reflective zone.

Evolution and genome specialization of Brucella suis biovar 2 Iberian lineages.

PubMed

Ferreira, Ana Cristina; Tenreiro, Rogério; de Sá, Maria Inácia Corrêa; Dias, Ricardo

2017-09-12

Swine brucellosis caused by B. suis biovar 2 is an emergent disease in domestic pigs in Europe. The emergence of this pathogen has been linked to the increase of extensive pig farms and the high density of infected wild boars (Sus scrofa). In Portugal and Spain, the majority of strains share specific molecular characteristics, which allowed establishing an Iberian clonal lineage. However, several strains isolated from wild boars in the North-East region of Spain are similar to strains isolated in different Central European countries. Comparative analysis of five newly fully sequenced B. suis biovar 2 strains belonging to the main circulating clones in Iberian Peninsula, with publicly available Brucella spp. genomes, revealed that strains from Iberian clonal lineage share 74% similarity with those reference genomes. Besides the 210 kb translocation event present in all biovar 2 strains, an inversion with 944 kb was presented in chromosome I of strains from the Iberian clone. At left and right crossover points, the inversion disrupted a TRAP dicarboxylate transporter, DctM subunit, and an integral membrane protein TerC. The gene dctM is well conserved in Brucella spp. except in strains from the Iberian clonal lineage. Intraspecies comparative analysis also exposed a number of biovar-, haplotype- and strain-specific insertion-deletion (INDELs) events and single nucleotide polymorphisms (SNPs) that could explain differences in virulence and host specificities. Most discriminative mutations were associated to membrane related molecules (29%) and enzymes involved in catabolism processes (20%). Molecular identification of both B. suis biovar 2 clonal lineages could be easily achieved using the target-PCR procedures established in this work for the evaluated INDELs. Whole-genome analyses supports that the B. suis biovar 2 Iberian clonal lineage evolved from the Central-European lineage and suggests that the genomic specialization of this pathogen in the Iberian Peninsula

Ipomoea pes-caprae (L.) R. Br (Convolvulaceae) relieved nociception and inflammation in mice - A topical herbal medicine against effects due to cnidarian venom-skin contact.

PubMed

da Silva Barth, Cristiane; Tolentino de Souza, Hugo Guilherme; Rocha, Lilian W; da Silva, Gislaine Francieli; Dos Anjos, Mariana Ferreira; Pastor, Veronica D'Avila; Belle Bresolin, Tania Mari; Garcia Couto, Angelica; Roberto Santin, José; Meira Quintão, Nara Lins

2017-03-22

Ipomoea pes-caprae is known as bayhops, beach morning glory or goat's foot, and in Brazil as salsa-de-praia. Its leaves are used in worldwide folk medicine for the relief of jellyfish-stings symptoms. The literature only reports the neutralizing effects of nonpolar plant derived over jellyfish venoms, without validating the popular use or exploring the mechanism of action. This study aimed to evaluate and validate the topical effects of a semisolid containing hydroethanolic extract obtained from the aerial parts of I. pes-caprae using different models of paw- and ear-oedema and spontaneous nociception in mice, attempting to better understand the mechanism involved in its effect. Leaf and stem of I. pes-caprae were extracted by ethanol 50% (v/v) and the soft-extract was incorporated in Hostacerin® cream base at 0.5%, 1.0% and 2% (w/w). The anti-hypersensitivity effects were evaluated by injecting the Physalia physalis venom into the right mice's hindpaw pre-treated either with the semisolid containing the I. pes-caprae extract or with the isolated majority compound 3,5-Di-O-caffeoylquinic acid (ISA). The topical anti-inflammatory activity was investigated using both preclinical models: paw oedema induced by trypsin, bradykinin (BK), histamine and carrageenan, and ear oedema induced by capsaicin. Additionally, the model of spontaneous nociception induced by trypsin and capsaicin were used to verify the topical antinociceptive activity. The animals pre-treated with the semisolid containing I. pes-caprae extract or with the intraplantar injection of the major component (ISA) had the mechanical hypersensitivity induced by P. physalis venom significantly reduced. Significant inhibition was also observed in paw-oedema induced by trypsin, histamine and BK, and in a less extent in carrageenan-induced paw oedema. Similar effect was observed in mice challenged to the capsaicin-induced ear-oedema. Besides the vascular effects, the extract interfered with leukocyte migration

Prognostic factors in Chinese patients with prostate cancer receiving primary androgen deprivation therapy: validation of Japan Cancer of the Prostate Risk Assessment (J-CAPRA) score and impacts of pre-existing obesity and diabetes mellitus.

PubMed

Hu, Meng-Bo; Yang, Tian; Hu, Ji-Meng; Zhu, Wen-Hui; Jiang, Hao-Wen; Ding, Qiang

2018-06-01

Our aim was to determine the prognostic factors in Chinese patients with prostate cancer receiving primary androgen deprivation therapy (PADT), validate the Japan Cancer of the Prostate Risk Assessment (J-CAPRA) score, and investigate the impacts of pre-existing obesity and diabetes mellitus (DM). The study enrolled Chinese patients diagnosed with prostatic adenocarcinoma and treated with bilateral orchiectomy as PADT at Huashan Hospital, Fudan University (Shanghai, China), from January 2003 to December 2015. The overall survival (OS) and prognostic value of J-CAPRA score, pre-existing obesity, DM, and various clinicopathological variables were analyzed. Of the 435 patients enrolled, 174 (40.0%) deaths occurred during follow-up; 3- and 5-year OS were 74.0 and 58.9%, respectively. Multivariate analysis identified that higher Gleason score and metastasis were both correlated with worse OS and that higher J-CAPRA score was correlated with worse OS [hazard ratio (HR) 1.110, 95% confidence interval (CI) 1.035-1.190, P = 0.003). Different risk categories based on J-CAPRA score showed good stratification in OS (log-rank P = 0.015). In subgroup analysis, pre-existing obesity as a protective factor in younger patients (age ≤ 65, HR 0.271, 95% CI 0.075-0.980, P = 0.046) and pre-existing DM as a risk factor in older patients (> 75, HR 1.854, 95% CI 1.026-3.351, P = 0.041) for OS were recognized, and the prediction accuracy of J-CAPRA was elevated after incorporating pre-existing obesity and DM. The J-CAPRA score presented with good OS differentiation among Chinese patients under PADT. Younger patients (age ≤ 65) had better OS with pre-existing obesity, while older patients (age > 75) had worse OS with pre-existing DM.

North Atlantic Oscillation influence on the stramflows of the Iberian Rivers

NASA Astrophysics Data System (ADS)

Lorenzo-Lacruz, J.; González-Hidalgo, J. C.; Vicente-Serrano, S. M.; López-Moreno, J. I.

2010-09-01

"NORTH ATLANTIC OSCILLATION INFLUENCE ON THE STREAMFLOWS OF THE IBERIAN RIVERS" LORENZO-LACRUZ, J. ¹, GONZÁLEZ-HIDALGO, J.C.², VICENTE-SERRANO, S.M. ¹, LÓPEZ-MORENO, J.I.¹ ¹Instituto Pirenaico de Ecología, CSIC (Spanish Research Council), Campus de Aula Dei, P.O. Box 202, Zaragoza 50080, Spain ²Departamento de Geografía, Universidad de Zaragoza, Zaragoza, Spain. We analyzed the North Atlantic Oscillation (NAO) influence on the monthly river discharges of Iberian rivers from 1945 to 2005. The study covers most of the Iberian river basins, using 187 monthly discharge series. The aim of this study is to determine the role of the variability of the NAO on the Iberian river discharges. Using the winter NAO we calculated correlations with the monthly river discharge series. We identified the positive and negative phases of the winter NAO for the period 1945-2006, and related to river discharge anomalies. Significant differences in river discharge were found between the positive and negative NAO phases with negative anomalies (dry conditions) during positive NAO periods, and positive anomalies (wet conditions) during negative NAO periods The results show a consistent and strong control of the river discharges by the winter NAO, but some spatial differences are shown, as three different domains were defined: a region under the direct influence of the NAO (central and western part of the Iberian Peninsula), a transition zone (Ebro Valley) and region free from that influence (Eastern part of the Iberian Peninsula). The spatial differences are also identified in the annual pattern of discharge anomalies. The basin characteristics, the location of the gauging stations and the human management are the possible drivers of these differences.

Fractal structure of sequential behaviour patterns: an indicator of stress

USGS Publications Warehouse

Alados, C.L.; Escos, J.M; Emlen, J.M.

1996-01-01

The detection of stress arising from parasitic infection bySarcoptes scabieisand from pregnancy is explored, using a fractal analysis of head lifting behaviour and feeding–non-feeding activity sequences in female Spanish ibex,Capra pyrenaica, under natural conditions. Because organisms under stress increase their metabolic rate and, in consequence, energy consumption, it follows that stress will, generally, lead to a reduction in complexity (fractal dimension) of exploratory behaviour. In the present study the fractal dimension of the three measures of complexity used declined with stress, both from pregnancy and from parasitic infection. This observation provides a new and effective way to assess the general state of animals’ health in the field, without the need for capture and handling.

Determining the Dimensions of the Heliosphere from the Time-Correlation of IBEX ENA Observations with Variations in the Solar Wind Dynamic Pressure

NASA Astrophysics Data System (ADS)

Reisenfeld, D. B.; Bzowski, M.; Funsten, H. O.; Janzen, P. H.; Kubiak, M. A.; McComas, D. J.; Schwadron, N.; Sokol, J. M.

2017-12-01

The IBEX mission has shown that variations in the ENA flux from the outer heliosphere are associated with the solar cycle. In particular, there is a good correlation between the dynamic pressure of the outbound solar wind and variations in the observed IBEX ENA flux (McComas et al, 2017; Reisenfeld et al., 2016). There is, of course, a time difference between observations of the outbound SW and the heliospheric ENAs with which they correlate, ranging from approximately two to four years, depending on ENA energy and look direction. In this study, we use this time difference as a means of "sounding" the heliosheath, that is, finding the average distance to the ENA source region in a particular direction. We use data from the first seven years of the IBEX mission. As each point in the sky is sampled once every six months, this gives us a time series of 14 points per look direction on which to time correlate. Fluxes are transformed from the spacecraft frame into a heliospheric inertial frame to remove the effects of spacecraft/Earth motion. Fluxes are also corrected for ENA extinction due to charge exchange. To improve statistics, we divide the sky into "macropixels" spanning 30 degrees in longitude and varying ranges of latitude to maintain comparable counting statistics per pixel. In calculating the response time, we account for the varying speed of the outbound solar wind by using a time and latitude dependent set of solar wind speeds derived from interplanetary scintillation data (Sokol et al. 2015). Consistent with heliospheric models, we determine the shortest distance to the heliopause is in the nose direction, with a flaring toward the flanks and poles.

SIFT-MS analysis of Iberian hams from pigs reared under different conditions.

PubMed

Carrapiso, Ana I; Noseda, Bert; García, Carmen; Reina, Raquel; Sánchez Del Pulgar, José; Devlieghere, Frank

2015-06-01

The aim of this study was to investigate the usefulness of a Selected Ion Flow Tube-Mass Spectrometry (SIFT-MS) equipment to tentatively quantify relevant volatile compounds of dry-cured Iberian ham, and to differentiate Iberian hams from pigs reared at four different conditions yielding different commercial grades. The SIFT-MS analysis allowed the rapid quantification of 39 Iberian ham volatile compounds, 16 of them being significantly affected by the rearing conditions of pigs. The full spectra SIFT-MS data allowed the correct classification of 79.2% of hams according to diet, which is a smaller percentage than that obtained using intramuscular fatty acid data (95.8%) obtained by using a gas chromatograph-flame ionization detector after lipid extraction and transesterification. Therefore, the SIFT-MS analysis would be a rapid tool to tentatively quantify some relevant volatile compounds, and also would provide a rapid but rough classification of Iberian ham according to the rearing conditions of pigs. Copyright © 2015 Elsevier Ltd. All rights reserved.

Characterization of Staphylococcus caprae Clinical Isolates Involved in Human Bone and Joint Infections, Compared with Goat Mastitis Isolates.

PubMed

d'Ersu, J; Aubin, G G; Mercier, P; Nicollet, P; Bémer, P; Corvec, S

2016-01-01

Staphylococcus caprae is an emerging microorganism in human bone and joint infections (BJI). The aim of this study is to describe the features of S. caprae isolates involved in BJI (H for human) compared with those of isolates recovered in goat mastitis (A for animal). Fourteen isolates of each origin were included. Identifications were performed using a Vitek 2 GP ID card, tuf gene sequencing, and matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) Vitek MS. Molecular typing was carried out using pulsed-field gel electrophoresis (PFGE) and DiversiLab technology. The crystal violet method was used to determine biofilm-forming ability. Virulence factors were searched by PCR. Vitek MS technology provides an accurate identification for the two types of isolates compared to that of gold-standard sequencing (sensitivity, 96.4%), whereas the Vitek 2 GP ID card was more effective for H isolates. Molecular typing methods revealed two distinct lineages corresponding to the origin despite few overlaps: H and A. In our experimental conditions, no significant difference was observed in biofilm production ability between H and A isolates. Nine isolates (5 H isolates and 4 A isolates) behaved as weak producers while one A isolate was a strong producer. Concerning virulence factors, the autolysin atlC and the serine aspartate adhesin (sdrZ) genes were detected in 24 isolates (86%), whereas the lipase gene was always detected, except in one H isolate (96%). The ica operon was present in 23 isolates (82%). Fibrinogen-binding (fbe) or collagen-binding (cna) genes were not detected by using primers designed for Staphylococcus aureus or Staphylococcus epidermidis, even in low stringency conditions. Although S. caprae probably remains underestimated in human infections, further studies are needed to better understand the evolution and the adaptation of this species to its host. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Terrestrial energetic neutral atom emissions and the ground-based geomagnetic indices: First daylong observations by IBEX

NASA Astrophysics Data System (ADS)

Ogasawara, K.; Dayeh, M. A.; Fuselier, S. A.; Goldstein, J.; McComas, D. J.; Valek, P. W.

2017-12-01

We report daylong continuous observations of bright terrestrial energetic neutral atom (ENA) emissions in the energy of 0.5-6.0 keV by Interstellar Boundary Explorer (IBEX). The unique vantage point of IBEX, 48 Earth radii (Re) from the dawn/dusk side, made an unprecedented long duration monitoring of ENAs possible from almost stable locations. This type of observation is difficult with the other ENA imager satellites since they are orbiting closer to the Earth in shorter periods. The studied energy range is unique due to the coverage of the transition from the solar wind plasma to the magnetospheric particles with a single sensor. In addition, the Coulomb decay becomes important for the protons with energy less than 1 keV. In order to minimize contamination from the sub-solar magnetosphere or the cusp emissions, we focused on two events when the auroral electrojet (AE) index exceeded 300 nT in this study. We will also show the ENA images from Two Wide-Angle Imaging Neutral-Atom Spectrometers (TWINS) in support of the IBEX observations. We found a significant correlation between the observed ENA profile and the AE indices, whose correlation coefficients were maximized at >0.75 for >1.4 keV energy. There are systematic differences between two events in terms of AU, AL, and Asy-H correlations: One event has the stronger AU correlation than AL and the Asy-H correlation, suggesting partial ring current contribution. The other has the stronger AL correlation than AU without Asy-H correlation, which suggests substorm related ENA emissions. On the contrary, we could not find a meaningful correlation with Sym-H for these two events. The other important finding is the decay time of these ENA emissions. The observed e-folding decay time, 2 to 4 hours for most of the energy bands, was a little shorter than the conventional ring-current decay time (typically >6 hours) expected from the charge exchange and the field-line curvature effect, suggesting the stronger effect of the

EXPLORING THE TIME DISPERSION OF THE IBEX-HI ENERGETIC NEUTRAL ATOM SPECTRA AT THE ECLIPTIC POLES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Allegrini, F.; Dayeh, M. A.; Desai, M. I.

2012-04-20

The Interstellar Boundary Explorer (IBEX) has observed energetic neutral atom (ENA) hydrogen emissions from the edge of the solar system for more than three years. The observations span energies from 0.01 to 6 keV FWHM. At energies greater than 0.5-6 keV, and for a travel distance of {approx}100 AU, the travel time difference between the slowest and the fastest ENA is more than a year. Therefore, we construct spectra including the effect that slower ENAs left the source at an earlier time than faster ones. If the source produces a steady rate of ENAs and the extinction does not vary,more » then we expect that the spectral shape would be time independent. However, while the extinction of ENAs has been fairly constant during the first two and a half years, the source appears to have changed, and thus the spectra at a single time may not represent the conditions at the source. IBEX's viewing allows continuous sampling of the ecliptic poles where fluxes can be continuously monitored. For a given source distance we construct spectra assuming that the measured ENAs left the source at roughly the same time. To accomplish this construction, we apply time lag corrections to the signal at different ENA energies that take into account the travel time difference. We show that the spectral shape at the poles exhibits a statistically significant change with time.« less

Clusters of Earthquakes In The Southern of Iberian Peninsula

NASA Astrophysics Data System (ADS)

Posadas, A. M.; Luzón, F.; Vidal, F.

The southern part of the Iberian Peninsula forms part of the western border of Eurasia- Africa plate boundary. This area is characterized by the occurrence of earthquakes of moderate magnitude (the maximum magnitude ranging from 4.5 to 5.5). From the point of view of seismic activity, this region is the most active one in he Iberian Penin- sula. Until earlier 80, only the National Seismic Network belonging to the National Geographic Institute monitores the activity in the south of Iberian Peninsula. From 1983 to the actuality, the Andalusian Seismic Network belonging to the Andalusian Geophysics Institute and Seismic Disaster Prevention, records the microseismicity of the area. Nowadays, the earthquakes catalogue used belongs to the Andalusian Insti- tute of Geophysics and Seismic Disaster Prevention and it counts on more than 20000 events registered from 1985 to 2001. Today, after 20 years of recording seismic ac- tivity, statistics analysis of the catalogue have sense. In this paper we present a first approach to the clustering properties of the seismicity in the south of the Iberian Penin- sula. The analysis carried out starts with the study of clustering properties (temporal and spatial properties) in the Southern of Iberian Peninsula seismicity to demonstrate, by using the Fractal Dimension of the temporal earthquake distribution and the Mor- ishita Index of the spatial distribution of earthquakes, that this seismicity is charac- terized by a tendency to form earthquake clusters, both spatial and temporal clusters. As an example, five seismogenetic areas of the zone are analyzed (Adra-Berja, Agron, Alboran, Antequera and Loja). This particular study of the series find out the b param- eter from the Gutenberg-Richter's Law (which characterizes the energetic relaxation of events), the p parameter from Omori's Law (that characterizes the temporal relax- ation of aftershocks) and the Fractal Dimension of the spatial distribution of earth- quakes (to find the

Diptera of forensic importance in the Iberian Peninsula: larval identification key.

PubMed

Velásquez, Y; Magaña, C; Martínez-Sánchez, A; Rojo, S

2010-09-01

A revision of the species and families of sarcosaprophagous flies (Diptera: Calliphoridae, Sarcophagidae, Muscidae, Fanniidae, Drosophilidae, Phoridae, Piophilidae and Stratiomyidae) suitable for forensic purposes in the Iberian Peninsula is presented. Morphological characteristics that allow the accurate identification of third instars of the species present in the Iberian Peninsula are described and presented in the form of a diagnostic key. For larval Calliphoridae, characteristics such as the spines of the body segments were useful for the genus Calliphora whereas features of the anal segment and the cephalopharyngeal skeleton were useful for larvae of Lucilia. Identification of three Chrysominae species present in the Iberian Peninsula is included. For larval Sarcophagidae, characters such as the arrangement and shape of spiracular openings, structures of the anal segment and the cephalopharyngeal skeleton were used for the first time. A new record of Sarcophaga cultellata Pandellé, from a human corpse, is also included as well as recent incursions into the European cadaveric entomofauna such as Synthesiomyia nudiseta (van der Wulp) and Hermetia illucens (Linnaeus). This work provides useful new information that could be applied to forensic investigations in the Iberian Peninsula and in southern Europe.

The recent (upper Miocene to Quaternary) and present tectonic stress distributions in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Herraiz, M.; de Vicente, G.; Lindo-Ñaupari, R.; Giner, J.; Simón, J. L.; GonzáLez-Casado, J. M.; Vadillo, O.; RodríGuez-Pascua, M. A.; CicuéNdez, J. I.; Casas, A.; CabañAs, L.; Rincón, P.; CortéS, A. L.; RamíRez, M.; Lucini, M.

2000-08-01

A general synthesis of the recent and present stress situation and evolution in the Iberian Peninsula was obtained from microstructural and seismological analysis. The stress evolution was deduced from (1) fault population analysis (FPA) from 409 sites distributed throughout the Iberian Peninsula, (2) paleostress indicators given by 324 stations taken from the bibliography, and (3) seismic data corresponding to 161 focal mechanisms evenly spread in the studied region. The application of FPA together with the determination of stress tensors and focal mechanisms for the whole Iberian microplate has provided two main results: (1) the Iberian Peninsula is undergoing a NW-SE oriented compression, except for the northeastern part (Pyrenees, Ebro Basin, and Iberian Chain), where it is N-S to NE-SW, and the Gulf of Cádiz, where it seems to be E-W, and (2) the main trends of the stress field have remained almost constant since the upper Miocene. The analysis performed by zones suggests the presence of local heterogeneities in the stress field.

Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle

PubMed Central

Anderung, Cecilia; Bouwman, Abigail; Persson, Per; Carretero, José Miguel; Ortega, Ana Isabel; Elburg, Rengert; Smith, Colin; Arsuaga, Juan Luis; Ellegren, Hans; Götherström, Anders

2005-01-01

The geographic situation of the Iberian Peninsula makes it a natural link between Europe and North Africa. However, it is a matter of debate to what extent African influences via the Straits Gibraltar have affected Iberia's prehistoric development. Because early African pastoralist communities were dedicated to cattle breeding, a possible means to detect prehistoric African–Iberian contacts might be to analyze the origin of cattle breeds on the Iberian Peninsula. Some contemporary Iberian cattle breeds show a mtDNA haplotype, T1, that is characteristic to African breeds, generally explained as being the result of the Muslim expansion of the 8th century A.D., and of modern imports. To test a possible earlier African influence, we analyzed mtDNA of Bronze Age cattle from the Portalón cave at the Atapuerca site in northern Spain. Although the majority of samples showed the haplotype T3 that dominates among European breeds of today, the T1 haplotype was found in one specimen radiocarbon dated 1800 calibrated years B.C. Accepting T1 as being of African origin, this result indicates prehistoric African–Iberian contacts and lends support to archaeological finds linking early African and Iberian cultures. We also found a wild ox haplotype in the Iberian Bronze Age sample, reflecting local hybridization or backcrossing or that aurochs were hunted by these farming cultures. PMID:15941827

Test development and use in five Iberian Latin American countries.

PubMed

Wechsler, Solange M; Oakland, Thomas; León, Carmem; Vivas, Eleonora; de Almeida, Leandro; Franco, Amanda; Pérez-Solís, María; Contini, Norma

2014-08-01

The abundance of scholarship on test development and use generally is higher in English-speaking than in Iberian Latin American countries. The purpose of this article is to help overcome this imbalance by describing and identifying similarities and differences in test development and use in two Iberian (Portugal and Spain) and three of the largest Latin American (Argentina, Brazil, and Venezuela) countries. The stages of test development in each country, roles of professional associations, presence of standards for test use, professionals' educational training, commonly used tests, together with prominent challenges to continued progress are discussed. Test development and use in these five countries are transitioning from a dependence on the use of translated tests to greater reliance on adapted and finally nationally constructed tests. Continued growth requires adherence to international standards guiding test development and use. Stronger alliance among professional associations in the Iberian Latin American countries could serve as a catalyst to promote test development in these regions. © 2014 International Union of Psychological Science.

A novel approach for choosing summary statistics in approximate Bayesian computation.

PubMed

Aeschbacher, Simon; Beaumont, Mark A; Futschik, Andreas

2012-11-01

The choice of summary statistics is a crucial step in approximate Bayesian computation (ABC). Since statistics are often not sufficient, this choice involves a trade-off between loss of information and reduction of dimensionality. The latter may increase the efficiency of ABC. Here, we propose an approach for choosing summary statistics based on boosting, a technique from the machine-learning literature. We consider different types of boosting and compare them to partial least-squares regression as an alternative. To mitigate the lack of sufficiency, we also propose an approach for choosing summary statistics locally, in the putative neighborhood of the true parameter value. We study a demographic model motivated by the reintroduction of Alpine ibex (Capra ibex) into the Swiss Alps. The parameters of interest are the mean and standard deviation across microsatellites of the scaled ancestral mutation rate (θ(anc) = 4N(e)u) and the proportion of males obtaining access to matings per breeding season (ω). By simulation, we assess the properties of the posterior distribution obtained with the various methods. According to our criteria, ABC with summary statistics chosen locally via boosting with the L(2)-loss performs best. Applying that method to the ibex data, we estimate θ(anc)≈ 1.288 and find that most of the variation across loci of the ancestral mutation rate u is between 7.7 × 10(-4) and 3.5 × 10(-3) per locus per generation. The proportion of males with access to matings is estimated as ω≈ 0.21, which is in good agreement with recent independent estimates.

Consequences of snowy winters on male mating strategies and reproduction in a mountain ungulate.

PubMed

Apollonio, Marco; Brivio, Francesca; Rossi, Iva; Bassano, Bruno; Grignolio, Stefano

2013-09-01

Alternative mating tactics (AMTs) are intrasexual variants in mating behaviour of several species ranging from arthropods to mammals. Male AMTs coexist between and within populations. In particular, male ungulates rarely adopt just one tactic throughout their lifetime. Tactics commonly change according to internal factors (age, body size, condition) and external conditions (weather, resources, predation, animal density). However, the influence of weather has not yet been investigated in upper vertebrates. Such influence may be relevant in species whose rutting period occurs late in fall or in winter, when environmental conditions and the snow cover in particular may vary considerably. We detected two AMTs in Alpine ibex (Capra ibex) males: older and full-grown males mainly adopted the tending tactic, while younger males usually pursued an alternative one (coursing tactic). Weather was found to influence the use of AMTs by males: in snowy mating seasons, the coursing tactic was no longer used due to difficulties in moving through deep snow. In snowy rutting periods, males appeared to delay or even avoid mating activities and a decrease of births was reported in the second part of the following birth season. Snow cover may have a negative effect on population dynamics by reducing the recruitment and on population genetic variability, as a consequence of poorer mating opportunities. Studies on factors affecting mating behaviour and leading to a reduced availability of mates and a decrease in female productivity are especially relevant in species, like Alpine ibex, whose genetic variability is low. Copyright © 2013 Elsevier B.V. All rights reserved.

A Novel Approach for Choosing Summary Statistics in Approximate Bayesian Computation

PubMed Central

Aeschbacher, Simon; Beaumont, Mark A.; Futschik, Andreas

2012-01-01

The choice of summary statistics is a crucial step in approximate Bayesian computation (ABC). Since statistics are often not sufficient, this choice involves a trade-off between loss of information and reduction of dimensionality. The latter may increase the efficiency of ABC. Here, we propose an approach for choosing summary statistics based on boosting, a technique from the machine-learning literature. We consider different types of boosting and compare them to partial least-squares regression as an alternative. To mitigate the lack of sufficiency, we also propose an approach for choosing summary statistics locally, in the putative neighborhood of the true parameter value. We study a demographic model motivated by the reintroduction of Alpine ibex (Capra ibex) into the Swiss Alps. The parameters of interest are the mean and standard deviation across microsatellites of the scaled ancestral mutation rate (θanc = 4Neu) and the proportion of males obtaining access to matings per breeding season (ω). By simulation, we assess the properties of the posterior distribution obtained with the various methods. According to our criteria, ABC with summary statistics chosen locally via boosting with the L2-loss performs best. Applying that method to the ibex data, we estimate θ^anc≈1.288 and find that most of the variation across loci of the ancestral mutation rate u is between 7.7 × 10−4 and 3.5 × 10−3 per locus per generation. The proportion of males with access to matings is estimated as ω^≈0.21, which is in good agreement with recent independent estimates. PMID:22960215

Stictonectes abellani sp. n. (Coleoptera: Dytiscidae: Hydroporinae) from the Iberian Peninsula, with notes on the phylogeny, ecology and distribution of the Iberian species of the genus.

PubMed

Millán, Andrés; Picazo, Félix; Fery, Hans; Moreno, José Luis; Sánchez-Fernández, David

2013-12-09

Stictonectes abellani sp. n. is described from the Iberian Peninsula. On average, the new species is larger and the colouration of the upper surface darker than in most other species of the genus. Seemingly the species has been confounded with others in the past, particularly S. optatus (Seidlitz, 1887). Males can be separated from externally similar species by studying the shape of the parameres. Additionally, the anterior margin of the clypeus is provided with a distinct rim in both sexes, which is absent or only weakly present in other species. The habitus and the male genitalia of the new species are illustrated, and compared with those of S. optatus. External morphological differences from other members of the genus are discussed. According to studies of the molecular phylogeny, based on fragments of four mitochondrial genes, S. abellani sp. n. is clearly separated from previously described species of Stictonectes Brinck, 1943, apparently being relatively basal within the genus. The new species is rather widely distributed in the south-western part of the Iberian Peninsula, inhabiting pools in small temporary siliceous streams. We provide distributional maps for all eight Iberian Stictonectes and estimate the potential distributional areas of the new species and the other two endemic Iberian species S. occidentalis Fresneda & Fery, 1990 and S. rebeccae Bilton, 2011, based on environmental niche modelling. 

Influence of pre-cure freezing of Iberian ham on proteolytic changes throughout the ripening process.

PubMed

Pérez-Palacios, Trinidad; Ruiz, Jorge; Barat, Jose Manuel; Aristoy, María Concepción; Antequera, Teresa

2010-05-01

This work aimed to investigate the effect of pre-cure freezing Iberian hams on proteolysis phenomena throughout the ripening process. Non-protein nitrogen (NPN), peptide nitrogen (PN) and amino acid nitrogen (AN) as well as amino acid and dipeptide evolution followed the same trend in both refrigerated (R) and pre-cure frozen (F) Iberian hams during processing. At the different stages of ripening, there were no differences in the content of NPN and AN while F dry-cured hams had higher levels of PN than R hams at the final step. This seemed to be more related to the salt content (lower in F than in R hams) than to the pre-cure freezing treatment. Most amino acids and dipeptides detected showed higher concentrations in F than in R Iberian hams at the green stage, being rather similar at the intermediate phases. At the final stage, the effects of pre-cure freezing of Iberian hams were not well defined, higher levels of some amino acids and dipeptides were found in R than in F Iberian hams whereas other amino acids were lower in R than in F hams. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

TRACKING THE SOLAR CYCLE THROUGH IBEX OBSERVATIONS OF ENERGETIC NEUTRAL ATOM FLUX VARIATIONS AT THE HELIOSPHERIC POLES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reisenfeld, D. B.; Janzen, P. H.; Bzowski, M., E-mail: dan.reisenfeld@umontana.edu, E-mail: paul.janzen@umontana.edu, E-mail: bzowski@cbk.waw.pl

With seven years of Interstellar Boundary Explorer ( IBEX ) observations, from 2009 to 2015, we can now trace the time evolution of heliospheric energetic neutral atoms (ENAs) through over half a solar cycle. At the north and south ecliptic poles, the spacecraft attitude allows for continuous coverage of the ENA flux; thus, signal from these regions has much higher statistical accuracy and time resolution than anywhere else in the sky. By comparing the solar wind dynamic pressure measured at 1 au with the heliosheath plasma pressure derived from the observed ENA fluxes, we show that the heliosheath pressure measuredmore » at the poles correlates well with the solar cycle. The analysis requires time-shifting the ENA measurements to account for the travel time out and back from the heliosheath, which allows us to estimate the scale size of the heliosphere in the polar directions. We arrive at an estimated distance to the center of the ENA source region in the north of 220 au and in the south a distance of 190 au. We also find a good correlation between the solar cycle and the ENA energy spectra at the poles. In particular, the ENA flux for the highest IBEX energy channel (4.3 keV) is quite closely correlated with the areas of the polar coronal holes, in both the north and south, consistent with the notion that polar ENAs at this energy originate from pickup ions of the very high speed wind (∼700 km s{sup −1}) that emanates from polar coronal holes.« less

Immunostimulatory acivity of Calophyllum brasiliense, Ipomoea pes-caprae and Matayba elaeagnoides demonstrated by human peripheral blood mononuclear cells proliferation.

PubMed

Philippi, Marina Elisa; Duarte, Bruna Momm; Da Silva, Carolina Vieira; De Souza, Michel Thomaz; Niero, Rivaldo; Cechinel Filho, Valdir; Bueno, Edneia Casagranda

2010-01-01

This study evaluates the effect of methanol extracts of three Brazilian medicinal plants on in vitro proliferation of human mononuclear cells. Lymphoproliferation assay was carried out by incubating human peripheral blood mononuclear cells from healthy donors (1 x 10(6) cells/mL) with extracts of Calophyllum brasiliense (roots), Ipomoea pes-caprae (whole plant) and Matayba elaeagnoides (bark), both at 10, 50, 100 and 200 microg/mL, alone or with phytohemagglutinin (PHA, 5 microg/mL), in 96-well microplates at 37 degrees C with 5% CO2, for 72 h. The quantification of cell proliferation assay was performed by blue tetrazolium (MTT) reduction with reading at 540 nm. Cells incubated with only the culture medium were used as negative control for cell proliferation, while the positive control consisted of cells and PHA. The results suggest that the extracts of all three studied plants induce T lymphocyte proliferation. I. pes-caprae showed immunostimulatory activity three times higher than the C. brasiliense extract, while that of the M. elaeagnoides extract was 1.5 times higher. The results demonstrate immunostimulatory effects of these three plants, therefore the continuity of these studies is recommended, in order to determine the active principles.

Electronic nose for the identification of pig feeding and ripening time in Iberian hams.

PubMed

Santos, J P; García, M; Aleixandre, M; Horrillo, M C; Gutiérrez, J; Sayago, I; Fernández, M J; Arés, L

2004-03-01

An electronic nose system to control the processing of dry-cured Iberian ham is presented. The sensors involved are tin oxide semiconductors thin films. They were prepared by RF sputtering. Some of the sensors were doped with metal catalysts as Pt and Pd, in order to improve the selectivity of the sensors. The multisensor with 16 semiconductor sensors, gave different responses from two types of dry-cured Iberian hams which differ in the feeding and curing time. The data has been analysed using the PCA (principal component analysis) and backpropagation and probabilistic neural networks. The analysis shows that different types of Iberian ham can be discriminated and identified successfully.

Atlas of Iberian water beetles (ESACIB database).

PubMed

Sánchez-Fernández, David; Millán, Andrés; Abellán, Pedro; Picazo, Félix; Carbonell, José A; Ribera, Ignacio

2015-01-01

The ESACIB ('EScarabajos ACuáticos IBéricos') database is provided, including all available distributional data of Iberian and Balearic water beetles from the literature up to 2013, as well as from museum and private collections, PhD theses, and other unpublished sources. The database contains 62,015 records with associated geographic data (10×10 km UTM squares) for 488 species and subspecies of water beetles, 120 of them endemic to the Iberian Peninsula and eight to the Balearic Islands. This database was used for the elaboration of the "Atlas de los Coleópteros Acuáticos de España Peninsular". In this dataset data of 15 additional species has been added: 11 that occur in the Balearic Islands or mainland Portugal but not in peninsular Spain and an other four with mainly terrestrial habits within the genus Helophorus (for taxonomic coherence). The complete dataset is provided in Darwin Core Archive format.

Atlas of Iberian water beetles (ESACIB database)

PubMed Central

Sánchez-Fernández, David; Millán, Andrés; Abellán, Pedro; Picazo, Félix; Carbonell, José A.; Ribera, Ignacio

2015-01-01

Abstract The ESACIB (‘EScarabajos ACuáticos IBéricos’) database is provided, including all available distributional data of Iberian and Balearic water beetles from the literature up to 2013, as well as from museum and private collections, PhD theses, and other unpublished sources. The database contains 62,015 records with associated geographic data (10×10 km UTM squares) for 488 species and subspecies of water beetles, 120 of them endemic to the Iberian Peninsula and eight to the Balearic Islands. This database was used for the elaboration of the “Atlas de los Coleópteros Acuáticos de España Peninsular”. In this dataset data of 15 additional species has been added: 11 that occur in the Balearic Islands or mainland Portugal but not in peninsular Spain and an other four with mainly terrestrial habits within the genus Helophorus (for taxonomic coherence). The complete dataset is provided in Darwin Core Archive format. PMID:26448717

Resin glycosides from Ipomoea pes-caprae.

PubMed

Escobedo-Martínez, Carolina; Pereda-Miranda, Rogelio

2007-06-01

Ipomoea pes-caprae (beach morning-glory; "riñonina" for the herbal drug in Mexico) is prescribed by traditional healers to moderate "heat" in an infected kidney. The hexane-soluble extract from the aerial parts of this medicinal plant, through preparative-scale recycling HPLC, yielded six new lipophilic oligosaccharides of jalapinolic acid: pescaproside B (1) and pescapreins V-IX (2-6). The previously known pescaproside A (7), pescapreins I-IV (8-11), and stoloniferin III (12) were also identified in the analyzed material by means of HPLC comparison with authentic samples. The glycosidic acid structure for all pentasaccharides was confirmed as simonic acid B. Pescaproside B (1), an acylated glycosidic acid methyl ester, is structurally related to pescaprein III (10). Pescapreins V (2) and VI (3) are diasteroisomeric tetraglycosidic lactones of operculinic acid C. Both of these compounds contain (2S)-methylbutyric and n-dodecanoic acids as their esterifying residues. Pescapreins VII (4) and IX (6) are pentasaccharides that contain an n-decanoyl group as their esterifying fatty acid residue instead of the n-dodecanoyl found in pescapreins I (8) and IV (11). Pescaprein VIII (5) represents an isomer of pescaprein II (9) containing an n-dodecanoyl unit as the esterifying residue at position C-4 of the third rhamnose moiety and a 2-methylpropanoyl at C-2 of the second rhamnose. High-field NMR spectroscopy and FAB mass spectrometry were used to characterize all new isolated compounds.

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos)

PubMed Central

Valdiosera, Cristina E.; García-Garitagoitia, José Luis; Garcia, Nuria; Doadrio, Ignacio; Thomas, Mark G.; Hänni, Catherine; Arsuaga, Juan-Luis; Barnes, Ian; Hofreiter, Michael; Orlando, Ludovic; Götherström, Anders

2008-01-01

The endangered brown bear populations (Ursus arctos) in Iberia have been suggested to be the last fragments of the brown bear population that served as recolonization stock for large parts of Europe during the Pleistocene. Conservation efforts are intense, and results are closely monitored. However, the efforts are based on the assumption that the Iberian bears are a unique unit that has evolved locally for an extended period. We have sequenced mitochondrial DNA (mtDNA) from ancient Iberian bear remains and analyzed them as a serial dataset, monitoring changes in diversity and occurrence of European haplogroups over time. Using these data, we show that the Iberian bear population has experienced a dynamic, recent evolutionary history. Not only has the population undergone mitochondrial gene flow from other European brown bears, but the effective population size also has fluctuated substantially. We conclude that the Iberian bear population has been a fluid evolutionary unit, developed by gene flow from other populations and population bottlenecks, far from being in genetic equilibrium or isolated from other brown bear populations. Thus, the current situation is highly unusual and the population may in fact be isolated for the first time in its history. PMID:18347332

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos).

PubMed

Valdiosera, Cristina E; García-Garitagoitia, José Luis; Garcia, Nuria; Doadrio, Ignacio; Thomas, Mark G; Hänni, Catherine; Arsuaga, Juan-Luis; Barnes, Ian; Hofreiter, Michael; Orlando, Ludovic; Götherström, Anders

2008-04-01

The endangered brown bear populations (Ursus arctos) in Iberia have been suggested to be the last fragments of the brown bear population that served as recolonization stock for large parts of Europe during the Pleistocene. Conservation efforts are intense, and results are closely monitored. However, the efforts are based on the assumption that the Iberian bears are a unique unit that has evolved locally for an extended period. We have sequenced mitochondrial DNA (mtDNA) from ancient Iberian bear remains and analyzed them as a serial dataset, monitoring changes in diversity and occurrence of European haplogroups over time. Using these data, we show that the Iberian bear population has experienced a dynamic, recent evolutionary history. Not only has the population undergone mitochondrial gene flow from other European brown bears, but the effective population size also has fluctuated substantially. We conclude that the Iberian bear population has been a fluid evolutionary unit, developed by gene flow from other populations and population bottlenecks, far from being in genetic equilibrium or isolated from other brown bear populations. Thus, the current situation is highly unusual and the population may in fact be isolated for the first time in its history.

Capability of MODIS radiance to analyze Iberian turbid plumes

NASA Astrophysics Data System (ADS)

Fernandez-Novoa, Diego; deCastro, Maite; Des, Marisela; Costoya, Xurxo; Mendes, Renato; Gomez-Gesteira, Moncho

2017-04-01

River plumes are formed near river mouths by freshwater and riverine materials. Therefore, the area influenced by freshwater (salinity plume) is usually negatively correlated with the area occupied by suspension and dissolved material (turbid plume). Suspended material results in a strong signal detected by satellite sensors whereas ocean clear waters have negligible contributions. Thus, remote sensing data, such as radiance obtained from Moderate Resolution Imaging Spectroradiometer (MODIS), are a very useful tool to analyze turbid plumes due to the high spatial and time resolution provided. Here, MODIS capability for characterizing similarities and differences among the most important Iberian plumes was assessed under the influence of their main forcing. Daily radiance data from MODIS-Aqua and MODIS-Terra satellite sensors were processed obtaining a resolution of 500 m. Two approaches are usually used for atmospheric correction treatments: Near-Infrared (NIR) bands and a combined algorithm using NIR and Short Wave Infrared (SWIR) bands. In the particular case of Iberian Peninsula plumes both methods offered similar results, although NIR bands present a lower associated error. MODIS allows working with several bands of normalized water-leaving radiances (nLw). Focusing in the resolution provided, nLw555 and 645 were the most appropriate because both provide the best coverage and correlation with river discharge. The nLw645 band was chosen because has a lower water penetration avoiding overestimations of turbidity caused by shallow seafloor areas and/or upwelling blooms. Daily data from both satellites were merged to enhance the robustness and precision of the study by increasing the number of available pixels. Results indicate that differences between radiance data from both satellites are negligible for Iberian plumes, justifying the merging. By last, each turbid limit, to delimit the respective plume from adjacent seawater, was obtained using two alternative

Complete mitochondrial genome of Chuanzhong black goat in southwest of China (Capra hircus).

PubMed

Huang, Yong-Fu; Chen, Li-Peng; Zhao, Yong-Ju; Zhang, Hao; Na, Ri-Su; Zhao, Zhong-Quan; Zhang, Jia-Hua; Jiang, Cao-De; Ma, Yue-Hui; Sun, Ya-Wang; E, Guang-Xin

2016-09-01

The Chuanzhong black goat (Capra hircus) is a breed native to southwest of China. Its complete mitochondrial genome is 16,641 nt in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1%, and G: 13.1%. The complete mitogenome of the Chinese indigenous breed of goat could provide a basic data for further phylogenetics analysis.

Marine exotic isopods from the Iberian Peninsula and nearby waters.

PubMed

Martínez-Laiz, Gemma; Ros, Macarena; Guerra-García, José M

2018-01-01

Effective management of marine bioinvasions starts with prevention, communication among the scientific community and comprehensive updated data on the distribution ranges of exotic species. Despite being a hotspot for introduction due to numerous shipping routes converging at the Strait of Gibraltar, knowledge of marine exotics in the Iberian Peninsula is scarce, especially of abundant but small-sized and taxonomically challenging taxa such as the Order Isopoda. To fill this gap, we conducted several sampling surveys in 44 marinas and provide the first comprehensive study of marine exotic isopods from the Iberian Peninsula, the southern side of the Strait of Gibraltar (northern Africa) and the Balearic Islands. Exotic species included Ianiropsis serricaudis (first record for the Iberian Peninsula and Lusitanian marine province), Paracerceis sculpta (first record for the Alboran Sea ecoregion), Paradella dianae , Paranthura japonica (earliest record for the Iberian Peninsula) and Sphaeroma walkeri . Photographs with morphological details for identification for non-taxonomic experts are provided, their worldwide distribution is updated and patterns of invasion are discussed. We report an expansion in the distribution range of all species, especially at the Strait of Gibraltar and nearby areas. Ianiropsis serricaudis and Paranthura japonica are polyvectic, with shellfish trade and recreational boating being most probable vectors for their introduction and secondary spread. The subsequent finding of the studied species in additional marinas over the years points at recreational boating as a vector and indicates a future spread. We call for attention to reduce lags in the detection and reporting of small-size exotics, which usually remain overlooked or underestimated until the invasion process is at an advanced stage.

Marine exotic isopods from the Iberian Peninsula and nearby waters

PubMed Central

Ros, Macarena; Guerra-García, José M.

2018-01-01

Effective management of marine bioinvasions starts with prevention, communication among the scientific community and comprehensive updated data on the distribution ranges of exotic species. Despite being a hotspot for introduction due to numerous shipping routes converging at the Strait of Gibraltar, knowledge of marine exotics in the Iberian Peninsula is scarce, especially of abundant but small-sized and taxonomically challenging taxa such as the Order Isopoda. To fill this gap, we conducted several sampling surveys in 44 marinas and provide the first comprehensive study of marine exotic isopods from the Iberian Peninsula, the southern side of the Strait of Gibraltar (northern Africa) and the Balearic Islands. Exotic species included Ianiropsis serricaudis (first record for the Iberian Peninsula and Lusitanian marine province), Paracerceis sculpta (first record for the Alboran Sea ecoregion), Paradella dianae, Paranthura japonica (earliest record for the Iberian Peninsula) and Sphaeroma walkeri. Photographs with morphological details for identification for non-taxonomic experts are provided, their worldwide distribution is updated and patterns of invasion are discussed. We report an expansion in the distribution range of all species, especially at the Strait of Gibraltar and nearby areas. Ianiropsis serricaudis and Paranthura japonica are polyvectic, with shellfish trade and recreational boating being most probable vectors for their introduction and secondary spread. The subsequent finding of the studied species in additional marinas over the years points at recreational boating as a vector and indicates a future spread. We call for attention to reduce lags in the detection and reporting of small-size exotics, which usually remain overlooked or underestimated until the invasion process is at an advanced stage. PMID:29507825

Genetic Footprints of Iberian Cattle in America 500 Years after the Arrival of Columbus

PubMed Central

Martínez, Amparo M.; Gama, Luis T.; Cañón, Javier; Ginja, Catarina; Delgado, Juan V.; Dunner, Susana; Landi, Vincenzo; Martín-Burriel, Inmaculada; Penedo, M. Cecilia T.; Rodellar, Clementina; Vega-Pla, Jose Luis; Acosta, Atzel; Álvarez, Luz A.; Camacho, Esperanza; Cortés, Oscar; Marques, Jose R.; Martínez, Roberto; Martínez, Ruben D.; Melucci, Lilia; Martínez-Velázquez, Guillermo; Muñoz, Jaime E.; Postiglioni, Alicia; Quiroz, Jorge; Sponenberg, Philip; Uffo, Odalys; Villalobos, Axel; Zambrano, Delsito; Zaragoza, Pilar

2012-01-01

Background American Creole cattle presumably descend from animals imported from the Iberian Peninsula during the period of colonization and settlement, through different migration routes, and may have also suffered the influence of cattle directly imported from Africa. The introduction of European cattle, which began in the 18th century, and later of Zebu from India, has threatened the survival of Creole populations, some of which have nearly disappeared or were admixed with exotic breeds. Assessment of the genetic status of Creole cattle is essential for the establishment of conservation programs of these historical resources. Methodology/Principal Findings We sampled 27 Creole populations, 39 Iberian, 9 European and 6 Zebu breeds. We used microsatellite markers to assess the origins of Creole cattle, and to investigate the influence of different breeds on their genetic make-up. The major ancestral contributions are from breeds of southern Spain and Portugal, in agreement with the historical ports of departure of ships sailing towards the Western Hemisphere. This Iberian contribution to Creoles may also include some African influence, given the influential role that African cattle have had in the development of Iberian breeds, but the possibility of a direct influence on Creoles of African cattle imported to America can not be discarded. In addition to the Iberian influence, the admixture with other European breeds was minor. The Creoles from tropical areas, especially those from the Caribbean, show clear signs of admixture with Zebu. Conclusions/Significance Nearly five centuries since cattle were first brought to the Americas, Creoles still show a strong and predominant signature of their Iberian ancestors. Creole breeds differ widely from each other, both in genetic structure and influences from other breeds. Efforts are needed to avoid their extinction or further genetic erosion, which would compromise centuries of selective adaptation to a wide range of

Carcass characteristics and fat depots in Iberian and F Large White × Landrace pigs intensively finished or raised outdoors in oak-tree forests.

PubMed

Bressan, M C; Almeida, J; Santos Silva, J; Bettencourt, C; Francisco, A; Gama, L T

2016-06-01

A factorial experiment was performed with 117 barrows belonging to the Iberian (IB) and crossbred F Large White × Landrace (F) genetic groups, either intensively finished (IN) or finished outdoors on pasture in an oak and cork tree forest (EX). Information was collected on carcass weight, yield, and dimensions; weight of organs, carcass cuts, and abdominal fat depots; backfat depth; measurements of the longissimus thoracis (LT); and yield of different leg tissues. For the 41 slaughter and carcass traits analyzed, the interaction between genetic group and finishing system was significant ( < 0.05) in 18 traits, and overall, there was a more pronounced influence of genetic group than of finishing system. In most variables, particularly those related with fat deposition, the interaction reflected mostly changes in mean differences among genetic groups rather than in their ranking, where IB pigs consistently produced fatter carcasses, regardless of the finishing system. Liver weight in IB-EX pigs was lower by nearly 8% when compared with F-EX or IB-IN pigs, but the opposite pattern was found in F pigs, where liver weight in F-EX pigs was higher by 16% relative to IB-EX pigs or to F-IN pigs. The deposition of adipose tissue was much larger ( < 0.05) in IB pigs compared with F pigs, with means for fat depots in IB pigs that were higher by about 25% in total abdominal fat, 94% in dorsal fat depth, 72% in intermuscular plus subcutaneous fat in the leg, and over 300% in intramuscular fat (IMF). The deposition of lean tissue was much lower in IB pigs ( < 0.05), with means for trimmed loin weight corresponding to about one-half of the means obtained in F pigs, whereas lean percentage in the leg of IB pigs was about two-thirds of the mean in F pigs and the mean area of the LT was nearly one-half of that observed in F pigs in the same finishing system ( < 0.05). A strong correlation was observed between the various fat depots when the full data set was considered (correlations

Long-term patterns in Iberian hare population dynamics in a protected area (Doñana National Park) in the southwestern Iberian Peninsula: Effects of weather conditions and plant cover.

PubMed

Carro, Francisco; Soriguer, Ramón C

2017-01-01

The Iberian hare (Lepus granatensis) is a widely distributed endemic species in the Iberian Peninsula. To improve our knowledge of its population dynamics, the relative abundance and population trends of the Iberian hare were studied in the autumns of 1995-2012 in a protected area (Doñana National Park) by spotlighting in 2 different habitats: marshland and ecotones. The average relative abundance was 0.38 hare/km (SD = 0.63) in the marshland and 3.6 hares/km (SD = 4.09) in ecotones. The Iberian hare population exhibited local interannual fluctuations and a negative population trend during the study period (1995-2012). The results suggest that its populations are in decline. The flooding of parts of the marshland in June, July and October favor hare abundance in the ecotone. Hare abundance in the marshland increases as the flooded surface area increases in October. These effects are more pronounced if the rains are early (October) and partially flood the marsh. By contrast, when marsh grasses and graminoids are very high and thick (as measured using the aerial herbaceous biomass [biomass marshland] as a proxy), the abundance of hares decreases dramatically as does the area of the marsh that is flooded (in November). © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

The Helium Warm Breeze in IBEX Observations As a Result of Charge-exchange Collisions in the Outer Heliosheath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bzowski, Maciej; Kubiak, Marzena A.; Czechowski, Andrzej

2017-08-10

We simulated the signal due to neutral He atoms, observed by the Interstellar Boundary Explorer ( IBEX ), assuming that charge-exchange collisions between neutral He atoms and He{sup +} ions operate everywhere between the heliopause and a distant source region in the local interstellar cloud, where the neutral and charged components are in thermal equilibrium. We simulated several test cases of the plasma flow within the outer heliosheath (OHS) and investigated the signal generation for plasma flows both in the absence and in the presence of the interstellar magnetic field (ISMF). We found that a signal in the portion ofmore » IBEX data identified as being due to the Warm Breeze (WB) does not arise when a homogeneous plasma flow in front of the heliopause is assumed, but it appears immediately when any reasonable disturbance in its flow due to the presence of the heliosphere is assumed. We obtained a good qualitative agreement between the data selected for comparison and the simulations for a model flow with the velocity vector of the unperturbed gas and the direction and intensity of magnetic field adopted from recent determinations. We conclude that direct-sampling observations of neutral He atoms at 1 au from the Sun are a sensitive tool for investigating the flow of interstellar matter in the OHS, that the WB is indeed the secondary population of interstellar helium, which was hypothesized earlier, and that the WB signal is consistent with the heliosphere distorted from axial symmetry by the ISMF.« less

Pre-cure freezing effect on physicochemical, texture and sensory characteristics of Iberian ham.

PubMed

Pérez-Palacios, T; Ruiz, J; Martín, D; Barat, J M; Antequera, T

2011-04-01

The aim of this work was to investigate the effect of pre-cure freezing on the physicochemical, texture and sensory characteristics of raw and dry-cured hams. Both, refrigerated (R) and pre-cure frozen (F) hams showed the same weight losses during the processing. At the green stage F Iberian hams had lower moisture content, higher values of a* and chroma, lower hardness and chewiness and higher adhesiveness and springiness than R ones. However, at the end of the processing R and F Iberian hams only were different in salt content, F hams showing lower values than R ones. Sensory analysis of Iberian dry-cured ham did not show differences in salty taste. Panelist detected a higher fat hardness and lean pastiness in F than in R hams. The overall acceptability for both groups of dry-cured hams was between average and good.

Characterization of lipophilic pentasaccharides from beach morning glory (Ipomoea pes-caprae).

PubMed

Pereda-Miranda, Rogelio; Escalante-Sánchez, Edgar; Escobedo-Martínez, Carolina

2005-02-01

The hexane-soluble extract from the aerial parts of the herbal drug Ipomoea pes-caprae (beach morning-glory), through preparative-scale recycling HPLC, yielded six lipophilic glycosides, namely, five new pentasaccharides of jalapinolic acid, pescaproside A (1) and pescapreins I-IV (2-5), as well as the known stoloniferin III (6). Saponification of the crude resin glycoside mixture yielded simonic acid B (7) as the glycosidic acid component, whereas the esterifying residues of the natural oligosaccharides comprised five fatty acids: 2-methylpropanoic, (2S)-methylbutyric, n-hexanoic, n-decanoic, and n-dodecanoic acids. Pescaproside A (1), an acylated glycosidic acid methyl ester, is related structurally to the product obtained from the macrolactone hydrolysis of pescapreins I-IV (2-5). All the isolated compounds (1-6), characterized through high-field NMR spectroscopy, were found to be weakly cytotoxic to a small panel of cancer cell lines.

Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon.

PubMed

Marques, Isabel; Shiposha, Valeriia; López-Alvarez, Diana; Manzaneda, Antonio J; Hernandez, Pilar; Olonova, Marina; Catalán, Pilar

2017-06-15

Brachypodium distachyon (Poaceae), an annual Mediterranean Aluminum (Al)-sensitive grass, is currently being used as a model species to provide new information on cereals and biofuel crops. The plant has a short life cycle and one of the smallest genomes in the grasses being well suited to experimental manipulation. Its genome has been fully sequenced and several genomic resources are being developed to elucidate key traits and gene functions. A reliable germplasm collection that reflects the natural diversity of this species is therefore needed for all these genomic resources. However, despite being a model plant, we still know very little about its genetic diversity. As a first step to overcome this gap, we used nuclear Simple Sequence Repeats (nSSR) to study the patterns of genetic diversity and population structure of B. distachyon in 14 populations sampled across the Iberian Peninsula (Spain), one of its best known areas. We found very low levels of genetic diversity, allelic number and heterozygosity in B. distachyon, congruent with a highly selfing system. Our results indicate the existence of at least three genetic clusters providing additional evidence for the existence of a significant genetic structure in the Iberian Peninsula and supporting this geographical area as an important genetic reservoir. Several hotspots of genetic diversity were detected and populations growing on basic soils were significantly more diverse than those growing in acidic soils. A partial Mantel test confirmed a statistically significant Isolation-By-Distance (IBD) among all studied populations, as well as a statistically significant Isolation-By-Environment (IBE) revealing the presence of environmental-driven isolation as one explanation for the genetic patterns found in the Iberian Peninsula. The finding of higher genetic diversity in eastern Iberian populations occurring in basic soils suggests that these populations can be better adapted than those occurring in western areas

Instrumental colour of Iberian ham subcutaneous fat and lean (biceps femoris): Influence of crossbreeding and rearing system.

PubMed

Carrapiso, Ana I; García, Carmen

2005-10-01

The influence of crossbreeding (Iberian vs Iberian×Duroc 50% pigs) and rearing system (Montanera vs Pienso) on the instrumental colour of Iberian ham (subcutaneous fat and biceps femoris muscle) and the relationships to sensory appearance and chemical composition were researched by using a factorial design. In subcutaneous fat, a significant effect (p<0.05) of crossbreeding and rearing system was found: b* and chroma were larger in hams from Iberian pigs than from Iberian×Duroc (50%) pigs, and L*, a* and chroma were larger in Pienso hams than in Montanera hams. CIEL*a*b* variables of subcutaneous fat were closely related to subcutaneous fatty acid composition, the largest correlationships involving L* (L* and 18:0, 0.652, p<0.001; L* and 18:1, -0.616, p<0.001). Instrumental colour variables and sensory appearance were also correlated (L* and fat pinkness, -0.539, p<0.001). In lean (biceps femoris), instrumental colour data was not affected by crossbreeding and rearing system. CIEL*a*b* variables were not related to chemical composition (moisture, NaCl, intramuscular fat and pigment content), although they were correlated to sensory appearance (L* and marbling, 0.419, p=0.014).

Geochemistry and metamorphism of the Mouriscas Complex, Ossa-Morena/Central Iberian zone boundary, Iberian Massif, Central Portugal: Implications for the Cadomian and Variscan orogenies

NASA Astrophysics Data System (ADS)

Henriques, S. B. A.; Neiva, A. M. R.; Tajčmanová, L.; Dunning, G. R.

2018-01-01

The Mouriscas Complex is a deformed and metamorphosed predominantly mafic igneous complex of Ediacaran and Ordovician age and crops out at the Ossa-Morena/Central Iberian zone boundary in the Iberian Massif, Central Portugal. It comprises amphibolite with Neoproterozoic protoliths (ca. 544 Ma), protomylonitic felsic dykes derived from younger trondhjemitic protoliths (ca. 483 Ma) and garnet amphibolite derived of even younger dioritic protoliths (ca. 477 Ma). The protoliths of the Neoproterozoic amphibolites are calc-alkaline magmas of basic to intermediate compositions with intraplate and active continental margin affinities and are considered to represent the final phase of the Cadomian arc magmatism. They are interpreted to have originated as coarse-grained intrusions, likely gabbro or diorite and generated from the partial melting of meta-igneous lower crust and mantle. Their emplacement occurred near the Cadomian metamorphic event dated at ca. 540 Ma (P = 7-8 kbar and T = 640-660 °C) which is interpreted to represent a continental collision. During the Late Cambrian-Early Ordovician an extensional episode occurred in the central-southern Iberian Massif and was also observed in other areas of the Variscan Orogen. It led to mantle upwelling and to the development of an aborted intracratonic rift located at the Ossa-Morena/Central Iberian zone boundary and to the opening of the Rheic Ocean to the south of the area studied in present coordinates (i.e., between the Ossa-Morena and South Portuguese Zones). This event has been dated at ca. 477 Ma and was responsible for the melting of deep ancient mafic crust and mantle with formation of bimodal magmatism in an intra-plate setting, as indicated by the protoliths of the protomylonitic felsic dykes with trondhjemitic composition and of the garnet amphibolite. Subsequent Variscan metamorphism took place under amphibolite facies conditions (P = 4-5.5 kbar; T = 600-625 °C) at lower P-T conditions than the Cadomian

Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non-domesticated Ruminants?

PubMed Central

Ambroset, Chloé; Pau-Roblot, Corinne; Game, Yvette; Gaurivaud, Patrice; Tardy, Florence

2017-01-01

The genus Mycoplasma, a group of free-living, wall-less prokaryotes includes more than 100 species of which dozens are primary pathogens of humans and domesticated animals. Mycoplasma species isolated from wildlife are rarely investigated but could provide a fuller picture of the evolutionary history and diversity of this genus. In 2013 several isolates from wild Caprinae were tentatively assigned to a new species, Mycoplasma (M.) feriruminatoris sp. nov., characterized by an unusually rapid growth in vitro and close genetic proximity to ruminant pathogenic species. We suspected that atypical isolates recently collected from Alpine ibex in France belonged to this new species. The present study was undertaken to verify this hypothesis and to further characterize the French ibex isolates. Phylogenetic analyses were performed to identify the isolates and position them in trees containing several other mycoplasma species pathogenic to domesticated ruminants. Population diversity was characterized by genomic macrorestriction and by examining the capacity of different strains to produce capsular polysaccharides, a feature now known to vary amongst mycoplasma species pathogenic to ruminants. This is the first report of M. feriruminatoris isolation from Alpine ibex in France. Phylogenetic analyses further suggested that M. feriruminatoris might constitute a 4th species in a genetic cluster that so far contains only important ruminant pathogens, the so-called Mycoplasma mycoides cluster. A PCR assay for specific identification is proposed. These French isolates were not clonal, despite being collected in a restricted region of the Alps, which signifies a considerable diversity of the new species. Strains were able to concomitantly produce two types of capsular polysaccharides, β-(1→6)-galactan and β-(1→6)-glucan, with variation in their respective ratio, a feature never before described in mycoplasmas. PMID:28611743

Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non-domesticated Ruminants?

PubMed

Ambroset, Chloé; Pau-Roblot, Corinne; Game, Yvette; Gaurivaud, Patrice; Tardy, Florence

2017-01-01

The genus Mycoplasma , a group of free-living, wall-less prokaryotes includes more than 100 species of which dozens are primary pathogens of humans and domesticated animals. Mycoplasma species isolated from wildlife are rarely investigated but could provide a fuller picture of the evolutionary history and diversity of this genus. In 2013 several isolates from wild Caprinae were tentatively assigned to a new species, Mycoplasma ( M.) feriruminatoris sp. nov., characterized by an unusually rapid growth in vitro and close genetic proximity to ruminant pathogenic species. We suspected that atypical isolates recently collected from Alpine ibex in France belonged to this new species. The present study was undertaken to verify this hypothesis and to further characterize the French ibex isolates. Phylogenetic analyses were performed to identify the isolates and position them in trees containing several other mycoplasma species pathogenic to domesticated ruminants. Population diversity was characterized by genomic macrorestriction and by examining the capacity of different strains to produce capsular polysaccharides, a feature now known to vary amongst mycoplasma species pathogenic to ruminants. This is the first report of M. feriruminatoris isolation from Alpine ibex in France. Phylogenetic analyses further suggested that M. feriruminatoris might constitute a 4th species in a genetic cluster that so far contains only important ruminant pathogens, the so-called Mycoplasma mycoides cluster. A PCR assay for specific identification is proposed. These French isolates were not clonal, despite being collected in a restricted region of the Alps, which signifies a considerable diversity of the new species. Strains were able to concomitantly produce two types of capsular polysaccharides, β-(1→6)-galactan and β-(1→6)-glucan, with variation in their respective ratio, a feature never before described in mycoplasmas.

Population structure of Cicada barbara Stål (Hemiptera, Cicadoidea) from the Iberian Peninsula and Morocco based on mitochondrial DNA analysis.

PubMed

Pinto-Juma, G A; Quartau, J A; Bruford, M W

2008-02-01

We assess the genetic history and population structure of Cicada barbara in Morocco and the Iberian Peninsula, based on analysis of the mitochondrial cytochrome b gene. The divergence between Morocco and the Iberian Peninsula populations was strongly corroborated by the molecular data, suggesting genetically isolated populations with a low level of gene flow. The Ceuta population from Spanish North Africa was more similar to the Iberian populations than the surrounding Moroccan populations, suggesting that the Strait of Gibraltar has not been acting as a strict barrier to dispersal while the Rif Mountains have. The Iberian Peninsula specimens showed a signature of demographic expansion before that which occurred in Morocco, but some of the assumptions related to the demographic parameters should be considered with caution due to the small genetic variation found. The high haplotype diversity found in Morocco implies higher demographic stability than in the Iberian Peninsula populations. These results do not, however, suggest a Moroccan origin for Iberian cicadas; but the most northwest region in Africa, such as Ceuta, might have acted as a southern refuge for Iberian cicadas during the most severe climatic conditions, from where they could expand north when climate improved. The separation of two subspecies within C. barbara (C. barbara lusitanica and C. barbara barbara) finds support with these results.

THE 2-3 kHz HELIOSPHERIC RADIATION, THE IBEX RIBBON, AND THE THREE-DIMENSIONAL SHAPE OF THE HELIOPAUSE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuselier, Stephen A.; Cairns, Iver H.

2013-07-10

Recent Interstellar Boundary Explorer (IBEX) observations indicate that the total dynamic pressure in the interstellar medium is closely partitioned between the plasma and the magnetic field, with an Alfven Mach number M{sub A} {approx} 1 and a sonic Mach number {approx}2. Observations of the IBEX Ribbon provide a unique determination of the orientation of the undraped interstellar magnetic field along the heliopause. There is also a striking correspondence between the Ribbon location and the source locations of 2-3 kHz radiation determined from Voyager observations: the radiation sources north of the ecliptic form a line parallel to but offset by aboutmore » 30 Degree-Sign from the Ribbon. A general Rankine-Hugoniot analysis is used to argue that the heliopause should not be symmetric about the velocity vector V{sub ISM} of the interstellar medium relative to the Sun (the nominal nose direction). Furthermore, the closest point on the heliopause to the Sun should be on the Ribbon for M{sub A} = 0 and at least 9 Degree-Sign from the nominal nose direction toward the Ribbon for M{sub A} = 1. These new results are combined into a conceptual model of the heliopause that includes (1) a plasma depletion layer formed as the interstellar magnetic field drapes against the heliopause, (2) a minimum inner heliosheath thickness and closest point between the Sun and heliopause along (or close to) the Ribbon rather than in the nominal nose direction (along V{sub ISM}), and (3) inference of an asymmetric heliopause shape from the angular offset of the radio sources and Ribbon and from the Rankine-Hugoniot analysis.« less

Carnivore fecal chemicals suppress feeding by Alpine goats (Capra hircus).

PubMed

Weldon, P J; Graham, D P; Mears, L P

1993-12-01

The efficacy of carnivore and ungulate fecal chemicals in suppressing the feeding behavior of Alpine goats (Capra hircus) was examined. In the first four experiments, goats were offered food covered with paper strips treated with fecal extracts of the Bengal tiger, Siberian tiger, African lion, and brown bear, respectively; food covered with solvent-treated and untreated (plain) papers served as controls in each experiment. Goats made fewer head entries into, and ate less food from, buckets containing fecal extracts. In the fifth experiment, goats were offered food covered with paper strips treated with fecal extracts of the puma, Dorcas gazelle, white-bearded gnu, and conspecifics; food covered with solvent-treated and plain papers again served as controls. The amounts of food consumed from buckets containing puma, gazelle, gnu, and solvent treatments were statistically indistinguishable, but less food was consumed from them than from buckets containing the goat-scented or plain papers. No significant differences among treatments were detected with respect to head entries. Field experiments are needed on the use of predator-derived chemicals to reduce damage by goats to vegetation.

Iberian Odonata distribution: data of the BOS Arthropod Collection (University of Oviedo, Spain)

PubMed Central

Torralba-Burrial, Antonio; Ocharan, Francisco J.

2013-01-01

Abstract Odonata are represented from the Iberian Peninsula by 79 species. However, there exists a significant gap in accessible knowledge about these species,especially regarding their distribution. This data paper describes the specimen-based Odonata data of the Arthropod Collection of the Department of Biología de Organismos y Sistemas (BOS), University of Oviedo, Spain. The specimens were mainly collected from the Iberian Peninsula (98.63% of the data records), especially the northern region. The earliest specimen deposited in the collection dates back to 1950, while the 1980’s and 2000’s are the best-represented time periods. Between 1950 and 2009, 16, 604 Odonata specimens were deposited and are documented in the dataset. Approximately 20% of the specimens belong to the families Coenagrionidae and Calopterygidae. Specimens include the holotype and paratypes of the Iberian subspecies Calopteryx haemorrhoidalis asturica Ocharan, 1983 and Sympetrum vulgatum ibericum Ocharan, 1985. The complete dataset is also provided in Darwin Core Archive format. PMID:23794917

Iberian Odonata distribution: data of the BOS Arthropod Collection (University of Oviedo, Spain).

PubMed

Torralba-Burrial, Antonio; Ocharan, Francisco J

2013-01-01

Odonata are represented from the Iberian Peninsula by 79 species. However, there exists a significant gap in accessible knowledge about these species,especially regarding their distribution. This data paper describes the specimen-based Odonata data of the Arthropod Collection of the Department of Biología de Organismos y Sistemas (BOS), University of Oviedo, Spain. The specimens were mainly collected from the Iberian Peninsula (98.63% of the data records), especially the northern region. The earliest specimen deposited in the collection dates back to 1950, while the 1980's and 2000's are the best-represented time periods. Between 1950 and 2009, 16, 604 Odonata specimens were deposited and are documented in the dataset. Approximately 20% of the specimens belong to the families Coenagrionidae and Calopterygidae. Specimens include the holotype and paratypes of the Iberian subspecies Calopteryx haemorrhoidalis asturica Ocharan, 1983 and Sympetrum vulgatum ibericum Ocharan, 1985. The complete dataset is also provided in Darwin Core Archive format.

Comparability of fish-based ecological quality assessments for geographically distinct Iberian regions.

PubMed

Segurado, P; Caiola, N; Pont, D; Oliveira, J M; Delaigue, O; Ferreira, M T

2014-04-01

In this work we compare two Iberian and a pan-European fish-based methods to assess ecological quality in rivers: the Fish-based Index of Biotic Integrity for Portuguese Wadeable Streams (F-IBIP), the Mediterranean Index of Biotic Integrity (IBIMED) and the pan-European Fish Index (EFI+). The results presented herein were developed in the context of the 2nd phase of the Intercalibration Exercise (IC), as required by the Water Frame Directive (WFD). The IC is aimed at ensuring comparability of the quality boundaries among the different WFD assessment methods developed by the Member States for each biological quality element. Although the two national assessment methods were developed for very distinct regions of Iberia (Western and Eastern Iberian Peninsula) they share the same methodological background: both are type-specific and guild-based multimetric indices. EFI+ is a multimetric guild-based model, but it is site-specific and uses a predictive modelling approach. The three indices were computed for all sites included in the Iberian Intercalibration database to allow the direct comparison, by means of linear regressions, of the resulting three quality values per site. The quality boundary harmonization between the two Iberian methods was only possible through an indirect comparison between the two indices, using EFI+ as a common metric. The three indices were also shown to be responsive to a common set of human induced pressures. This study highlights the need to develop general assessment methods adapted to wide geographical ranges with high species turnover to help intercalibrating assessment methods tailored for geographically more restricted regions. © 2013.

Ascent ability of brown trout, Salmo trutta, and two Iberian cyprinids − Iberian barbel, Luciobarbus bocagei, and northern straight-mouth nase, Pseudochondrostoma duriense − in a vertical slot fishway

USGS Publications Warehouse

Sanz-Ronda, Fco. Javier; Bravo-Cordoba, F.J.; Fuentes-Perez, J.F.; Castro-Santos, Theodore R.

2016-01-01

Passage performance of brown trout (Salmo trutta), Iberian barbel (Luciobarbus bocagei), and northern straight-mouth nase (Pseudochondrostoma duriense) was investigated in a vertical slot fishway in the Porma River (Duero River basin, Spain) using PIT telemetry. We analysed the effects of different fishway discharges on motivation and passage success. Both cyprinid species ascended the fishway easily, performing better than the trout despite their theoretically weaker swimming performance. Fishway discharge affected fish motivation although it did not clearly influence passage success. Observed results can guide design and operation criteria of vertical slot fishways for native Iberian fish.

Conservation genetics of managed ungulate populations

USGS Publications Warehouse

Scribner, Kim T.

1993-01-01

Natural populations of many species are increasingly impacted by human activities. Perturbations are particularly pronunced for large ungulates due in part to sport and commercial harvest, to reductions and fragmentation of native habitat, and as the result of reintroductions. These perturbations affect population size, sex and age composition, and population breeding structure, and as a consequence affect the levels and partitioning of genetic variation. Three case histories highlighting long-term ecological genetic research on mule deer Odocoileus hemionus (Rafinesque, 1817), white-tailed deer O. virginianus (Zimmermann, 1780), and Alpine ibex Capra i. ibex Linnaeus, 1758 are presented. Joint examinations of population ecological and genetic data from several populations of each species reveal: (1) that populations are not in genetic equilibrium, but that allele frequencies and heterozygosity change dramatically over time and among cohorts produced in successive years, (2) populations are genetically structured over short and large geographic distances reflecting local breeding structure and patterns of gene flow, respectively; however, this structure is quite dynamic over time, due in part to population exploitation, and (3) restocking programs are often undertaken with small numbers of founding individuals resulting in dramatic declines in levels of genetic variability and increasing levels of genetic differentiation among populations due to genetic drift. Genetic characteristics have and will continue to provide valuable indirect sources of information relating enviromental and human perturbations to changes in population processes.

A reappraisal of the Middle Triassic chirotheriid Chirotherium ibericus Navás, 1906 (Iberian Range NE Spain), with comments on the Triassic tetrapod track biochronology of the Iberian Peninsula

PubMed Central

Castanera, Diego; Gasca, José Manuel; Canudo, José Ignacio

2015-01-01

Triassic vertebrate tracks are known from the beginning of the 19th century and have a worldwide distribution. Several Triassic track ichnoassemblages and ichnotaxa have a restricted stratigraphic range and are useful in biochronology and biostratigraphy. The record of Triassic tracks in the Iberian Peninsula has gone almost unnoticed although more than 25 localities have been described since 1897. In one of these localities, the naturalist Longinos Navás described the ichnotaxon Chirotherium ibericus in 1906.The vertebrate tracks are in two sandy slabs from the Anisian (Middle Triassic) of the Moncayo massif (Zaragoza, Spain). In a recent revision, new, previously undescribed vertebrate tracks have been identified. The tracks considered to be C. ibericus as well as other tracks with the same morphology from both slabs have been classified as Chirotherium barthii. The rest of the tracks have been assigned to Chirotheriidae indet., Rhynchosauroides isp. and undetermined material. This new identification of C. barthii at the Navás site adds new data to the Iberian record of this ichnotaxon, which is characterized by the small size of the tracks when compared with the main occurrences of this ichnotaxon elsewhere. As at the Navás tracksite, the Anisian C. barthii-Rhynchosauroides ichnoassemblage has been found in other coeval localities in Iberia and worldwide. This ichnoassemblage belongs to the upper Olenekian-lower Anisian interval according to previous biochronological proposals. Analysis of the Triassic Iberian record of tetrapod tracks is uneven in terms of abundance over time. From the earliest Triassic to the latest Lower Triassic the record is very scarce, with Rhynchosauroides being the only known ichnotaxon. Rhynchosauroides covers a wide temporal range and gives poor information for biochronology. The record from the uppermost Lower Triassic to the Middle Triassic is abundant. The highest ichnodiversity has been reported for the Anisian with an

Characteristics of storms that contribute to extreme precipitation events over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Trigo, Ricardo; Ramos, Alexandre M.; Ordoñez, Paulina; Liberato, Margarida L. R.; Trigo, Isabel F.

2014-05-01

Floods correspond to one of the most deadly natural disasters in the Iberian Peninsula during the last century. Quite often these floods are associated to intense low pressure systems with an Atlantic origin. In recent years a number of episodes have been evaluated on a case-by-case approach, with a clear focus on extreme events, thus lacking a systematic assessment. In this study we focus on the characteristics of storms for the extended winter season (October to March) that are responsible for the most extreme rainfall events over large areas of the Iberian Peninsula. An objective method for ranking daily precipitation events during the extended winter is used based on the most comprehensive database of high resolution (0.2º latitude by 0.2º longitude) gridded daily precipitation dataset available for the Iberian Peninsula. The magnitude of an event is obtained after considering the total area affected as well as its intensity in every grid point (taking into account the daily normalised departure from climatology). Different precipitation rankings are studied considering the entire Iberian Peninsula, Portugal and also the six largest river basins in the Iberian Peninsula (Duero, Ebro, Tagus, Minho, Guadiana and Guadalquivir). Using an objective cyclone detecting and tracking scheme [Trigo, 2006] the storm track and characteristics of the cyclones were obtained using the ERA-Interim reanalyses for the 1979-2008 period. The spatial distribution of extratropical cyclone positions when the precipitation extremes occur will be analysed over the considered sub-domains (Iberia, Portugal, major river basins). In addition, we distinguish the different cyclone characteristics (lifetime, direction, minimum pressure, position, velocity, vorticity and radius) with significant impacts in precipitation over the different domains in the Iberian Peninsula. This work was partially supported by FEDER (Fundo Europeu de Desenvolvimento Regional) funds through the COMPETE (Programa

New insights into the genetic composition and phylogenetic relationship of wolves and dogs in the Iberian Peninsula.

PubMed

Pires, Ana Elisabete; Amorim, Isabel R; Borges, Carla; Simões, Fernanda; Teixeira, Tatiana; Quaresma, Andreia; Petrucci-Fonseca, Francisco; Matos, José

2017-06-01

This study investigates the gene pool of Portuguese autochthonous dog breeds and their wild counterpart, the Iberian wolf subspecies ( Canis lupus signatus ), using standard molecular markers. A combination of paternal and maternal molecular markers was used to investigate the genetic composition, genetic differentiation and genetic relationship of native Portuguese dogs and the Iberian wolf. A total of 196 unrelated dogs, including breed and village dogs from Portugal, and other dogs from Spain and North Africa, and 56 Iberian wolves (wild and captive) were analyzed for nuclear markers, namely Y chromosome SNPs, Y chromosome STR loci, autosomal STR loci, and a mitochondrial fragment of the control region I. Our data reveal new variants for the molecular markers and confirm significant genetic differentiation between Iberian wolf and native domestic dogs from Portugal. Based on our sampling, no signs of recent introgression between the two subspecies were detected. Y chromosome data do not reveal genetic differentiation among the analyzed dog breeds, suggesting they share the same patrilineal origin. Moreover, the genetic distinctiveness of the Iberian wolf from other wolf populations is further confirmed with the description of new mtDNA variants for this endemism. Our research also discloses new molecular markers for wolf and dog subspecies assignment, which might become particularly relevant in the case of forensic or noninvasive genetic studies. The Iberian wolf represents a relic of the once widespread wolf population in Europe and our study reveals that it is a reservoir of unique genetic diversity of the grey wolf, Canis lupus . These results stress the need for conservation plans that will guarantee the sustainability of this threatened top predator in Iberia.

Latest Early Pleistocene remains of Lynx pardinus (Carnivora, Felidae) from the Iberian Peninsula: Taxonomy and evolutionary implications

NASA Astrophysics Data System (ADS)

Boscaini, Alberto; Alba, David M.; Beltrán, Juan F.; Moyà-Solà, Salvador; Madurell-Malapeira, Joan

2016-07-01

The Iberian lynx (Lynx pardinus) is a critically endangered felid that, during the last fifty years, has been subject to an intensive conservation program in an attempt to save it from extinction. This species is first recorded at ca. 1.7-1.6 Ma (late Villafranchian, late Early Pleistocene) in NE Iberian Peninsula, roughly coinciding with the large faunal turnover that occurred around the middle to late Villafranchian boundary. Here we describe the largest collection of L. pardinus remains available to date from the Iberian late Early Pleistocene (Epivillafranchian), including localities from the Vallparadís Section (Vallès-Penedès Basin, NE Iberian Peninsula) and Cueva Victoria (Cartagena, SE Iberian Peninsula). The morphology and biometry of the studied material attests to the widespread occurrence of L. pardinus in the Mediterranean coast of the Iberian Peninsula since the latest Early Pleistocene, i.e., about 0.5 million years earlier than it was generally accepted (i.e., at the beginning of the Middle Pleistocene). Based on the features observed in the large sample studied in this paper, we conclude that Lynx spelaeus is a junior synonym of L. pardinus and further propose to assign all the Epivillafranchian and younger fossil lynxes from SW Europe to the extant species L. pardinus. Due to the arrival of the Eurasian lynx (Lynx lynx) into Europe at the beginning of the Late Pleistocene, the attribution of specimens younger than MIS 5e to either this species or L. pardinus solely on morphological grounds has proven equivocal. Here we discuss the main diagnostic features of both species of European lynxes and further review their evolutionary history and paleobiogeography throughout the Pleistocene.

Evaluation of primary androgen deprivation therapy in prostate cancer patients using the J-CAPRA risk score

PubMed Central

Akaza, Hideyuki; Hinotsu, Shiro; Usami, Michiyuki; Ogawa, Osamu; Kitamura, Tadaichi; Suzuki, Kazuhiro; Tsukamoto, Taiji; Naito, Seiji; Namiki, Mikio; Hirao, Yoshihiko; Murai, Masaru

2013-01-01

Purpose: To determine the influence of maximal androgen blockade (MAB) and non-MAB hormonal therapy with an luteinizing hormone releasing hormone (LHRH) analog on overall survival of prostate cancer patients in the Japan Study Group of Prostate Cancer (J-CaP) registry according to risk, as assessed using the novel J-CAPRA risk instrument. To undertake a multivariate analysis combining J-CAPRA risk score, type of hormonal therapy and comorbidities, in order to assess their impact on overall survival. Methods: The J-CaP database includes men in Japan diagnosed with any stage of prostate cancer between 2001 and 2003 and treated with primary androgen deprivation therapy (PADT), as monotherapy or in combination. A total of 26,272 men were enrolled and of these 19,265 were treated with PADT. This analysis was undertaken using the latest data set (30 April, 2010) including a total of 15,727 patients who received PADT and had follow-up data for periods ranging from 0 to 9.2 years. Results: MAB for prostate cancer patients with intermediate- or high-risk disease has a significant benefit in terms of overall survival compared with LHRH analog monotherapy or surgical castration alone. Better results may be achieved in older (≥75 years) patients. Patient comorbidities are an important factor in determining overall survival, notably in older patients, and should be considered when selecting therapy. Conclusions: Based on large-scale registry data, this report is the first to analyze the outcomes of MAB therapy in patients with prostate cancer at a wide range of disease stages. MAB therapy may provide significant survival benefits in intermediate- and high-risk patients. PMID:24223407

Woody debris in north Iberian streams: influence of geomorphology, vegetation, and management.

PubMed

Diez, J R; Elosegi, A; Pozo, J

2001-11-01

The effect of stream geomorphology, maturity, and management of riparian forests on abundance, role, and mobility of wood was evaluated in 20 contrasting reaches in the Agüera stream catchment (northern Iberian Peninsula). During 1 year the volume of woody debris exceeding 1 cm in diameter was measured in all reaches. All large woody debris (phi > 5 cm) pieces were tagged, their positions mapped, and their subsequent changes noted. Volume of woody debris was in general low and ranged from 40 to 22,000 cm3 m-2; the abundance of debris dams ranged from 0 to 5.5 per 100 m of channel. Wood was especially rare and unstable in downstream reaches, or under harvested forests (both natural or plantations). Results stress that woody debris in north Iberian streams has been severely reduced by forestry and log removal. Because of the important influence of woody debris on structure and function of stream systems, this reduction has likely impacted stream communities. Therefore, efforts to restore north Iberian streams should include in-channel and riparian management practices that promote greater abundance and stability of large woody debris whenever possible.

The gastropod Phorcus sauciatus (Koch, 1845) along the north-west Iberian Peninsula: filling historical gaps

NASA Astrophysics Data System (ADS)

Rubal, Marcos; Veiga, Puri; Moreira, Juan; Sousa-Pinto, Isabel

2014-03-01

The intertidal gastropod Phorcus sauciatus is a subtropical grazer that reaches its northern boundary in the Iberian Peninsula. Distribution of P. sauciatus along the Iberian Peninsula shows, however, gaps in its distribution. The present study was aimed at detecting possible recent changes on the population structure and distribution of P. sauciatus along the north-west Atlantic coast of the Iberian Peninsula. To achieve this aim, we adopted a qualitative sampling design to explore the presence of P. sauciatus along a region within its historical gap of distribution (north Portuguese coast). In addition, a quantitative sampling design was adopted to test hypotheses about the abundance and size structure of P. sauciatus populations among regions with different historical records of its abundance and among shores with different exposure. Results showed that P. sauciatus was present along the north Portuguese coast. However, the abundance and size structure of the newly settled populations were significantly different to those of the historically recorded populations. Moreover, P. sauciatus was able to establish populations at sheltered shores. Considering these results, we propose models for the distribution of P. sauciatus along the Iberian Peninsula, based on effects of sea surface temperature, and to explain the size-frequency of their populations based on their density.

Influence of physicochemical characteristics and high pressure processing on the volatile fraction of Iberian dry-cured ham.

PubMed

Martínez-Onandi, Nerea; Rivas-Cañedo, Ana; Ávila, Marta; Garde, Sonia; Nuñez, Manuel; Picon, Antonia

2017-09-01

The volatile fraction of 30 Iberian dry-cured hams of different physicochemical characteristics and the effect of high pressure processing (HPP) at 600MPa on volatile compounds were investigated. According to the analysis of variance carried out on the levels of 122 volatile compounds, intramuscular fat content influenced the levels of 8 benzene compounds, 5 carboxylic acids, 2 ketones, 2 furanones, 1 alcohol, 1 aldehyde and 1 sulfur compound, salt concentration influenced the levels of 1 aldehyde and 1 ketone, salt-in-lean ratio had no effect on volatile compounds, and water activity influenced the levels of 3 sulfur compounds, 1 alcohol and 1 aldehyde. HPP-treated samples of Iberian ham had higher levels of 4 compounds and lower levels of 31 compounds than untreated samples. A higher influence of HPP treatment on volatile compounds than physicochemical characteristics was observed for Iberian ham. Therefore, HPP treatment conditions should be optimized in order to diminish its possible effect on Iberian ham odor and aroma characteristics. Copyright © 2017 Elsevier Ltd. All rights reserved.

Lithospheric strength across the ocean-continent transition in the NW of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Martín-Velázquez, Silvia; Martín-González, Fidel

2014-05-01

The main objective of this work is to investigate the relation between the strength of the lithosphere and the observed pattern of seismicity across the ocean-continent transition in the NW margin of the Iberian Peninsula. The seismicity is diffuse in this intraplate area, far from the seismically active margin of the plate: the Eurasia-African plate boundary, where convergence occurs at a rate of 4-5mm/year. The earthquake epicentres are mainly limited to an E-W trending zone (onshore seismicity is more abundant than offshore), and most earthquakes occur at depths less than 30 km, however, offshore depths are up to 150 km). Moreover, one of the problems to unravel in this area is that the seismotectonic interpretations of the anomalous seismicity in the NW peninsular are contradictory. The temperature and strength profiles have been modelled in three domains along the non-volcanic rifted West Iberian Margin: 1) the oceanic lithosphere of the Iberian Abyssal Plain, 2) the oceanic lithosphere near the ocean-continent transition of the Galicia Bank, and 3) the continental lithosphere of the NW Iberian Massif. The average bathymetry and topography have been used to fit the thermal structures of the three types of lithospheres, given that the heat flow and heat production values show a varied range. The geotherms, together with the brittle and ductile rheological laws, have been used to calculate the strength envelopes in different stress regimes (compression, shear and tensile). The continental lithosphere-asthenosphere boundary is located at 123 km and several brittle-ductile transitions appear in the crust and the mantle. However, the oceanic lithospheres are thinner (110 km near the Galicia Bank and 87 km in the Iberian Abbysal Plain) and more simple (brittle behaviour in the crust and upper mantle). The earthquake distribution is best explained by lithospheres with dry compositions and shear or tensile stress regimes. These results are similar can be compared to

The reactivation of the SW Iberian passive margin: a brief review

NASA Astrophysics Data System (ADS)

Duarte, Joao; Rosas, Filipe; Terrinha, Pedro; Schellart, Wouter; Almeida, Pedro; Gutscher, Marc-André; Riel, Nicolas; Ribeiro, António

2016-04-01

On the morning of the 1st of November of 1755 a major earthquake struck offshore the Southwest Iberian margin. This was the strongest earthquake ever felt in Western Europe. The shake, fire and tsunami devastated Lisbon, was felt as far as Finland and had a profound impact on the thinkers of that time, in particular on the Enlightenment philosophers such as Voltaire, Rousseau and Kant. The Great Lisbon Earthquake is considered by many as the event that marks the birth of modern geosciences; and made of this region one of the most well studied areas in the world. After the 1755 earthquake, Kant and others authors wrote several treaties dealing with the causes and dynamics of earthquakes and tsunamis and were close to identify some key elements of what we now call plate tectonics. More than two hundred years later, in the year of 1969, the region was struck by another major earthquake. This was precisely during the period in which the theory of plate tectonics was being built. Geoscientists like Fukao (1973), Purdy (1975) and Mackenzie (1977) immediately focused their attention in the area. They suggested that these events were related with "transient" subduction of Africa below Iberia, along the East-West Azores-Gibraltar plate boundary. Several years later, Ribeiro (1989) suggested that instead of Africa being subducted below Iberia, it was the West Iberian passive margin that was being reactivated, a process that may, in time, lead to the formation of a new subduction zone. In the turning of the millennium, a subducting slab was imaged bellow the Gibraltar Straits, a remanent of the Western Mediterranean arc system that according to Gutscher et al. (2002) was related with ongoing subduction. Recently, it was proposed that a causal link between the Gibraltar subduction system and the reactivation of the SW Iberian margin might exist. In addition, the large-scale Africa-Eurasia convergence is inducing compressive stresses along the West Iberian margin. The margin

Not so deserted…paleoecology and human subsistence in Central Iberia (Guadalajara, Spain) around the Last Glacial Maximum

NASA Astrophysics Data System (ADS)

Yravedra, José; Julien, Marie-Anne; Alcaraz-Castaño, Manuel; Estaca-Gómez, Verónica; Alcolea-González, Javier; de Balbín-Behrmann, Rodrigo; Lécuyer, Christophe; Marcel, Claude Hillaire; Burke, Ariane

2016-05-01

In contrast to the coastal areas of the Iberian Peninsula, the Upper Palaeolithic settlement of central Iberia, dominated by the Spanish plateau, is poorly known. Traditional models assume a total or virtual depopulation of the interior of the Iberian Peninsula during the Last Glacial. In this paper we present a detailed investigation of human-environment interactions through the first zooarchaeological, taphonomic and isotopic study of the key site of Peña Capón, a rock shelter located in the south-eastern foothills of the Central System range that contains a multi-layered deposit dated to marine isotope stage 2 (MIS 2). Analyses of the faunal assemblages of the Proto-Solutrean (3) and Middle Solutrean (2) layers show that human preferentially hunted horse, deer and iberian ibex living in the vicinity of the rock shelter. Isotope geochemistry of the animal remains of Peña Capón provides us with the first detailed intra-tooth multi-proxy analysis for this time period in south-western Europe, providing estimates of climatic conditions, seasonal flucturation of diet, as well as patterns of seasonal mobility. Our results indicate that human presence at Peña Capón was apparently restricted to relatively warm intervals around the LGM or reflects the presence of an ecological refuge, and provide us with evidence of recurrent human presence in the Iberian interior during the Upper Paleolithic prior to the Magdalenian.

Biology and impacts of Pacific island invasive species 9. Capra hircus, the feral goat, (Mammalia: Bovidae)

USGS Publications Warehouse

Chynoweth, Mark W.; Litton, Creighton M.; Lepczyk, Christopher A.; Hess, Steve A.; Cordell, Susan

2013-01-01

Domestic goats, Capra hircus, were intentionally introduced to numerous oceanic islands beginning in the sixteenth century. The remarkable ability of C. hircus to survive in a variety of conditions has enabled this animal to become feral and impact native ecosystems on islands throughout the world. Direct ecological impacts include consumption and trampling of native plants, leading to plant community modification and transformation of ecosystem structure. While the negative impacts of feral goats are well-known and effective management strategies have been developed to control this invasive species, large populations persist on many islands. This review summarizes the impacts of feral goats on Pacific island ecosystems, and the management strategies available to control this invasive species.

Effect of muscle type and frozen storage on the quality parameters of Iberian restructured meat preparations.

PubMed

Antequera, Teresa; Pérez-Palacios, Trinidad; Rodas, Elena; Rodríguez, Mar; Córdoba, Juan J

2014-10-01

The main objective of this study was to evaluate the effect of muscle type and frozen storage on the quality of restructured meat preparations from undervalued Iberian muscle to make use of meat from a high-quality and natural pig production system. The effect of two muscle types (i.e. white-glycolytic (W) and red-oxidative (R)) and frozen storage (lasting 0, 30, 60 and 90 days) on quality characteristics were assessed. Significant differences were found between the W and R Iberian restructured preparations in most physicochemical and some colour, texture and sensory traits, and in the fatty acid profile and oxidative measurements, suggesting that the R muscles are more suitable; however, the microbial contamination should be reduced. Frozen storage reduced but did not eliminate the initial microbial contamination, and it enhanced some quality traits in the Iberian restructured preparations, i.e. increased a* values, cohesiveness and juiciness and decreased adhesiveness and pastiness, without negatively affecting any parameter. Thus, frozen Iberian restructured preparations are recommended to be commercialized. In addition, the implementation or revision of Hazard Analysis and Critical Control Point is recommended to reduce microbial contamination. © The Author(s) 2013 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

Modelling larval dispersal dynamics of common sole (Solea solea) along the western Iberian coast

NASA Astrophysics Data System (ADS)

Tanner, Susanne E.; Teles-Machado, Ana; Martinho, Filipe; Peliz, Álvaro; Cabral, Henrique N.

2017-08-01

Individual-based coupled physical-biological models have become the standard tool for studying ichthyoplankton dynamics and assessing fish recruitment. Here, common sole (Solea solea L.), a flatfish of high commercial importance in Europe was used to evaluate transport of eggs and larvae and investigate the connectivity between spawning and nursery areas along the western Iberian coast as spatio-temporal variability in dispersal and recruitment patterns can result in very strong or weak year-classes causing large fluctuations in stock size. A three-dimensional particle tracking model coupled to Regional Ocean Modelling System model was used to investigate variability of sole larvae dispersal along the western Iberian coast over a five-year period (2004-2009). A sensitivity analysis evaluating: (1) the importance of diel vertical migrations of larvae and (2) the size of designated recruitment areas was performed. Results suggested that connectivity patterns of sole larvae dispersal and their spatio-temporal variability are influenced by the configuration of the coast with its topographical structures and thus the suitable recruitment area available as well as the wind-driven mesoscale circulation along the Iberian coast.

Long-term changes in composition and distribution patterns in the Iberian herpetofaunal communities since the latest Pleistocene

NASA Astrophysics Data System (ADS)

Bisbal-Chinesta, Josep Francesc; Blain, Hugues-Alexandre

2018-03-01

The climate has undergone significant changes since the end of the Last Glacial Maximum and in the course of the Holocene, parallel to important cultural transformations and migrations in the human communities. The faunal record has also suffered the effects of climate change. Amphibians and reptiles in particular have been shown to be highly sensitive because they are very susceptible to temperature alterations due to their ectothermy. This research presents the first approach to the Iberian paleobiogeography of the different species of amphibians and reptiles from the Late Pleistocene (MIS3) to present times, based on a comparative synthesis of the latest research published in recent years and the fossil record of the 58 archaeo-paleontological sites with significant assemblages. The paleoherpetofaunal associations make it possible to establish two major biotic regions during the Late Pleistocene. The first biotic region was located in the center and south of the Iberian Peninsula, with thermophilic species as the most representative taxa. The second biotic region was formed by the Atlantic-Cantabrian facade and the northeast Iberian area, dominated by hygrophilous and Euro-Siberian species, with an absence of Mediterranean species. After the Last Glacial Maximum there was an unprecedented concurrence in the northern Iberian Peninsula of autochthonous taxa from that area with thermophilic species. In the early Holocene, new species with no previous record in the Iberian Peninsula entered northern Iberia from eastern Mediterranean refugia. Finally, the introduction of North African species was the last significant biogeographical change during the Middle-Late Holocene.

Spatial and temporal characteristics of wildfire activity over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Calado, Teresa; DaCamara, Carlos C.; Ermida, Sofia; Trigo, Isabel.

2013-04-01

According to the official reports of the European Commission, during the period 1980-2010 the Iberian Peninsula has contributed to 60% of the total burned area of 14 620 968 ha, which was recorded in the five Southern Member States with higher wildfire activity (Portugal, Spain, France, Italy and Greece). The aim of the present study is to assess fire activity over the Iberian Peninsula based on time series of hot spots extracted from the MODIS global daily active fire product (MOD14A1 and MYD14A1). This dataset, which contains the coordinates of MODIS pixels where fire events were identified together with the respective date and quality indicators, covers the period from July 2002 to August 2012. It is first shown that overall hot spot activity exhibits power law behaviour. A spatial analysis is then undertaken based on land cover information as obtained from Globcover - an ESA initiative relying on observations from the 300m MERIS on board the ENVISAT. Temporal analysis of hot spot activity is also performed based on daily information about meteorological conditions provided by the European Centre for Medium-Range Weather Forecasts. Results obtained allow defining a set of fire regions over the Iberian Peninsula determined essentially by the respective land cover type, which present coherent statistical behaviour in space and time. Finally, models of fire risk are developed for each region and their potential operational use by forest and civil protection services is discussed.

Genetic diversity and structure of Iberian Peninsula cowpeas compared to world-wide cowpea accessions using high density SNP markers.

PubMed

Carvalho, Márcia; Muñoz-Amatriaín, María; Castro, Isaura; Lino-Neto, Teresa; Matos, Manuela; Egea-Cortines, Marcos; Rosa, Eduardo; Close, Timothy; Carnide, Valdemar

2017-11-21

Cowpea (Vigna unguiculata L. Walp) is an important legume crop due to its high protein content, adaptation to heat and drought and capacity to fix nitrogen. Europe has a deficit of cowpea production. Knowledge of genetic diversity among cowpea landraces is important for the preservation of local varieties and is the basis to obtain improved varieties. The aims of this study were to explore diversity and the genetic structure of a set of Iberian Peninsula cowpea accessions in comparison to a worldwide collection and to infer possible dispersion routes of cultivated cowpea. The Illumina Cowpea iSelect Consortium Array containing 51,128 SNPs was used to genotype 96 cowpea accessions including 43 landraces and cultivars from the Iberian Peninsula, and 53 landraces collected worldwide. Four subpopulations were identified. Most Iberian Peninsula accessions clustered together with those from other southern European and northern African countries. Only one accession belonged to another subpopulation, while two accessions were 'admixed'. A lower genetic diversity level was found in the Iberian Peninsula accessions compared to worldwide cowpeas. The genetic analyses performed in this study brought some insights into worldwide genetic diversity and structure and possible dispersion routes of cultivated cowpea. Also, it provided an in-depth analysis of genetic diversity in Iberian Peninsula cowpeas that will help guide crossing strategies in breeding programs.

Downscaling of Global Climate Change Estimates to Regional Scales: An Application to Iberian Rainfall in Wintertime.

NASA Astrophysics Data System (ADS)

von Storch, Hans; Zorita, Eduardo; Cubasch, Ulrich

1993-06-01

A statistical strategy to deduct regional-scale features from climate general circulation model (GCM) simulations has been designed and tested. The main idea is to interrelate the characteristic patterns of observed simultaneous variations of regional climate parameters and of large-scale atmospheric flow using the canonical correlation technique.The large-scale North Atlantic sea level pressure (SLP) is related to the regional, variable, winter (DJF) mean Iberian Peninsula rainfall. The skill of the resulting statistical model is shown by reproducing, to a good approximation, the winter mean Iberian rainfall from 1900 to present from the observed North Atlantic mean SLP distributions. It is shown that this observed relationship between these two variables is not well reproduced in the output of a general circulation model (GCM).The implications for Iberian rainfall changes as the response to increasing atmospheric greenhouse-gas concentrations simulated by two GCM experiments are examined with the proposed statistical model. In an instantaneous `2 C02' doubling experiment, using the simulated change of the mean North Atlantic SLP field to predict Iberian rainfall yields, there is an insignificant increase of area-averaged rainfall of 1 mm/month, with maximum values of 4 mm/month in the northwest of the peninsula. In contrast, for the four GCM grid points representing the Iberian Peninsula, the change is 10 mm/month, with a minimum of 19 mm/month in the southwest. In the second experiment, with the IPCC scenario A ("business as usual") increase Of C02, the statistical-model results partially differ from the directly simulated rainfall changes: in the experimental range of 100 years, the area-averaged rainfall decreases by 7 mm/month (statistical model), and by 9 mm/month (GCM); at the same time the amplitude of the interdecadal variability is quite different.

Extreme precipitation events in the Iberian Peninsula and its association with Atmospheric Rivers

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Liberato, Margarida L. R.; Trigo, Ricardo M.

2015-04-01

Extreme precipitation events in the Iberian Peninsula during the winter half of the year have major socio-economic impacts associated with floods, landslides, extensive property damage and life losses. In recent years, a number of works have shed new light on the role played by Atmospheric Rivers (ARs) in the occurrence of extreme precipitation events in both Europe and USA. ARs are relatively narrow regions of concentrated WV responsible for horizontal transport in the lower atmosphere corresponding to the core section of the broader warm conveyor belt occurring over the oceans along the warm sector of extra-tropical cyclones. Over the North Atlantic ARs are usually W-E oriented steered by pre-frontal low level jets along the trailing cold front and subsequently feed the precipitation in the extra-tropical cyclones. It was shown that more than 90% of the meridional WV transport in the mid-latitudes occurs in the AR, although they cover less than 10% of the area of the globe. The large amount of WV that is transported can lead to heavy precipitation and floods. An automated ARs detection algorithm is used for the North Atlantic Ocean Basin allowing the identification and a comprehensive characterization of the major AR events that affected the Iberian Peninsula over the 1948-2012 period. The extreme precipitation days in the Iberian Peninsula were assessed recently by us (Ramos et al., 2014) and their association (or not) with the occurrence of AR is analyzed in detail here. The extreme precipitation days are ranked by their magnitude and are obtained after considering 1) the area affected and 2) the precipitation intensity. Different rankings are presented for the entire Iberian Peninsula, Portugal and also for the six largest Iberian river basins (Minho, Duero, Tagus, Guadiana, Guadalquivir and Ebro) covering the 1950-2008 period (Ramos et al., 2014). Results show that the association between ARs and extreme precipitation days in the western domains (Portugal

Long-term vegetation activity trends in the Iberian Peninsula and The Balearic Islands using high spatial resolution NOAA-AVHRR data (1981 - 2015).

NASA Astrophysics Data System (ADS)

Martin-Hernandez, Natalia; Vicente-Serrano, Sergio; Azorin-Molina, Cesar; Begueria-Portugues, Santiago; Reig-Gracia, Fergus; Zabalza-Martínez, Javier

2017-04-01

We have analysed trends in the Normalized Difference Vegetation Index (NDVI) in the Iberian Peninsula and The Balearic Islands over the period 1981 - 2015 using a new high resolution data set from the entire available NOAA - AVHRR images (IBERIAN NDVI dataset). After a complete processing including geocoding, calibration, cloud removal, topographic correction and temporal filtering, we obtained bi-weekly time series. To assess the accuracy of the new IBERIAN NDVI time-series, we have compared temporal variability and trends of NDVI series with those results reported by GIMMS 3g and MODIS (MOD13A3) NDVI datasets. In general, the IBERIAN NDVI showed high reliability with these two products but showing higher spatial resolution than the GIMMS dataset and covering two more decades than the MODIS dataset. Using the IBERIAN NDVI dataset, we analysed NDVI trends by means of the non-parametric Mann-Kendall test and Theil-Sen slope estimator. In average, vegetation trends in the study area show an increase over the last decades. However, there are local spatial differences: the main increase has been recorded in humid regions of the north of the Iberian Peninsula. The statistical techniques allow finding abrupt and gradual changes in different land cover types during the analysed period. These changes are related with human activity due to land transformations (from dry to irrigated land), land abandonment and forest recovery.

Prey preferences of the snow leopard (Panthera uncia): regional diet specificity holds global significance for conservation.

PubMed

Lyngdoh, Salvador; Shrotriya, Shivam; Goyal, Surendra P; Clements, Hayley; Hayward, Matthew W; Habib, Bilal

2014-01-01

The endangered snow leopard is a large felid that is distributed over 1.83 million km(2) globally. Throughout its range it relies on a limited number of prey species in some of the most inhospitable landscapes on the planet where high rates of human persecution exist for both predator and prey. We reviewed 14 published and 11 unpublished studies pertaining to snow leopard diet throughout its range. We calculated prey consumption in terms of frequency of occurrence and biomass consumed based on 1696 analysed scats from throughout the snow leopard's range. Prey biomass consumed was calculated based on the Ackerman's linear correction factor. We identified four distinct physiographic and snow leopard prey type zones, using cluster analysis that had unique prey assemblages and had key prey characteristics which supported snow leopard occurrence there. Levin's index showed the snow leopard had a specialized dietary niche breadth. The main prey of the snow leopard were Siberian ibex (Capra sibrica), blue sheep (Pseudois nayaur), Himalayan tahr (Hemitragus jemlahicus), argali (Ovis ammon) and marmots (Marmota spp). The significantly preferred prey species of snow leopard weighed 55±5 kg, while the preferred prey weight range of snow leopard was 36-76 kg with a significant preference for Siberian ibex and blue sheep. Our meta-analysis identified critical dietary resources for snow leopards throughout their distribution and illustrates the importance of understanding regional variation in species ecology; particularly prey species that have global implications for conservation.

Prey Preferences of the Snow Leopard (Panthera uncia): Regional Diet Specificity Holds Global Significance for Conservation

PubMed Central

Lyngdoh, Salvador; Shrotriya, Shivam; Goyal, Surendra P.; Clements, Hayley; Hayward, Matthew W.; Habib, Bilal

2014-01-01

The endangered snow leopard is a large felid that is distributed over 1.83 million km2 globally. Throughout its range it relies on a limited number of prey species in some of the most inhospitable landscapes on the planet where high rates of human persecution exist for both predator and prey. We reviewed 14 published and 11 unpublished studies pertaining to snow leopard diet throughout its range. We calculated prey consumption in terms of frequency of occurrence and biomass consumed based on 1696 analysed scats from throughout the snow leopard's range. Prey biomass consumed was calculated based on the Ackerman's linear correction factor. We identified four distinct physiographic and snow leopard prey type zones, using cluster analysis that had unique prey assemblages and had key prey characteristics which supported snow leopard occurrence there. Levin's index showed the snow leopard had a specialized dietary niche breadth. The main prey of the snow leopard were Siberian ibex (Capra sibrica), blue sheep (Pseudois nayaur), Himalayan tahr (Hemitragus jemlahicus), argali (Ovis ammon) and marmots (Marmota spp). The significantly preferred prey species of snow leopard weighed 55±5 kg, while the preferred prey weight range of snow leopard was 36–76 kg with a significant preference for Siberian ibex and blue sheep. Our meta-analysis identified critical dietary resources for snow leopards throughout their distribution and illustrates the importance of understanding regional variation in species ecology; particularly prey species that have global implications for conservation. PMID:24533080

Taeniid species of the Iberian wolf (Canis lupus signatus) in Portugal with special focus on Echinococcus spp.☆

PubMed Central

Guerra, Diogo; Armua-Fernandez, Maria Teresa; Silva, Marta; Bravo, Inês; Santos, Nuno; Deplazes, Peter; Carvalho, Luís Manuel Madeira de

2012-01-01

Taeniid species represent relevant pathogens in human and animals, circulating between carnivorous definitive hosts and a variety of mammalian intermediate hosts. In Portugal, however, little is known about their occurrence and life cycles, especially in wild hosts. An epidemiological survey was conducted to clarify the role of the Iberian wolf as a definitive host for taeniid species, including Echinococcus spp. Wolf fecal samples (n = 68) were collected from two regions in Northern Portugal. Taeniid eggs were isolated through a sieving-flotation technique, and species identification was performed using multiplex-PCR followed by sequencing of the amplicons. Taenia hydatigena (in 11.8% of the samples), Taenia serialis (5.9%), Taenia pisiformis (2.9%), Taenia polyacantha (1.5%) and Echinococcus intermedius (Echinococcus granulosus ‘pig strain’, G7) (1.5%) were detected. This is the first study to characterize the taeniid species infecting the Portuguese Iberian wolf, with the first records of T. polyacantha and E. intermedius in this species in the Iberian Peninsula. Iberian wolves can be regarded as relevant hosts for the maintenance of the wild and synanthropic cycles of taeniids in Portugal. PMID:24533315

Recent decadal trends in Iberian water vapour: GPS analysis and WRF process study

NASA Astrophysics Data System (ADS)

Miranda, Pedro M. A.; Nogueira, Miguel; Semedo, Alvaro; Benevides, Pedro; Catalao, Joao; Costa, Vera

2016-04-01

A 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. The same analysis with ERA-Interim reanalysis data, which was used to force the WRF simulations, does not reveal the same signal in PWV, and indeed correlates poorly with the GPS observations, indicating that the data assimilation process makes the water vapour data in reanalysis unusable for climate change purposes. The good correlation between the WRF simulated data and GPS observations allow for a detailed analysis of the processes involved in the evolution of the PWV field. Akcnowledgements: Study done within FCT Grant RECI/GEO-MET/0380/2012, financially supported by FCT Grant UID/ GEO/50019/2013-IDL Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http

Interstellar He Flow Analysis over the Past 9 Years with Observations over the Full IBEX-Lo Energy Range

NASA Astrophysics Data System (ADS)

Moebius, E.; Bower, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; McComas, D. J.; Schwadron, N.; Swaczyna, P.; Sokol, J. M.; Wurz, P.

2017-12-01

The Sun's motion relative to the surrounding interstellar medium leads to an interstellar neutral (ISN) wind through the heliosphere. This wind is moderately depleted by ionization and can be analyzed in-situ with pickup ions and direct neutral atom imaging. Since 2009, observations of the ISN wind at 1 AU with the Interstellar Boundary Explorer (IBEX) have returned a very precise 4-dimensional parameter tube for the flow vector (speed VISN, longitude λISN, and latitude βISN) and temperature TISN of interstellar He in the local cloud, which organizes VISN, βISN, and TISN as a function of λISN, and the local flow Mach number (VThISN/VISN). Typically, the uncertainties along this functional dependence are larger than across it. Here we present important refinements of the determination of this parameter tube by analyzing the spin-integrated ISN flux for its maximum as a function of ecliptic longitude for each year through 2017. In particular, we include a weak energy dependence of the sensor efficiency by comparing the response in all four energy steps that record the ISN He flow. In addition, a recent operational extension of letting the spin axis pointing of IBEX drift to the maximum offset west of the Sun, results in an additional constraint that helps breaking the degeneracy of the ISN parameters along the 4D tube. This constraint is part of the complement of drivers for the determination of all four ISN parameters effective in the full χ2-minimization by comparing the observed count rate distribution with detailed modeling of the ISN flow (e.g. Bzowski et al., 2015, ApJS, 220:28; Schwadron et al., 2015, ApJS, 220:25) and is complementary to the independent determination of λISN using the longitude dependence of the He+ pickup ion cut-off speed with STEREO PLASTIC and ACE SWICS (Möbius et al., 2015, ApJ 815:20).

The Capra Research Program for Modelling Extreme Mass Ratio Inspirals

NASA Astrophysics Data System (ADS)

Thornburg, Jonathan

2011-02-01

Suppose a small compact object (black hole or neutron star) of mass m orbits a large black hole of mass M ≫ m. This system emits gravitational waves (GWs) that have a radiation-reaction effect on the particle's motion. EMRIs (extreme-mass-ratio inspirals) of this type will be important GW sources for LISA. To fully analyze these GWs, and to detect weaker sources also present in the LISA data stream, will require highly accurate EMRI GW templates. In this article I outline the ``Capra'' research program to try to model EMRIs and calculate their GWs ab initio, assuming only that m ≪ M and that the Einstein equations hold. Because m ≪ M the timescale for the particle's orbit to shrink is too long for a practical direct numerical integration of the Einstein equations, and because this orbit may be deep in the large black hole's strong-field region, a post-Newtonian approximation would be inaccurate. Instead, we treat the EMRI spacetime as a perturbation of the large black hole's ``background'' (Schwarzschild or Kerr) spacetime and use the methods of black-hole perturbation theory, expanding in the small parameter m/M. The particle's motion can be described either as the result of a radiation-reaction ``self-force'' acting in the background spacetime or as geodesic motion in a perturbed spacetime. Several different lines of reasoning lead to the (same) basic O(m/M) ``MiSaTaQuWa'' equations of motion for the particle. In particular, the MiSaTaQuWa equations can be derived by modelling the particle as either a point particle or a small Schwarzschild black hole. The latter is conceptually elegant, but the former is technically much simpler and (surprisingly for a nonlinear field theory such as general relativity) still yields correct results. Modelling the small body as a point particle, its own field is singular along the particle worldline, so it's difficult to formulate a meaningful ``perturbation'' theory or equations of motion there. Detweiler and Whiting found

Sensitivity of two Iberian lakes to North Atlantic atmospheric circulation modes

NASA Astrophysics Data System (ADS)

Hernández, Armand; Trigo, Ricardo M.; Pla-Rabes, Sergi; Valero-Garcés, Blas L.; Jerez, Sonia; Rico-Herrero, Mayte; Vega, José C.; Jambrina-Enríquez, Margarita; Giralt, Santiago

2015-12-01

The North Atlantic Oscillation (NAO) exerts a major influence on the climate of the North Atlantic region. However, other atmospheric circulation modes (ACMs), such as the East Atlantic (EA) and Scandinavian (SCAND) patterns, also play significant roles. The dynamics of lakes on the Iberian Peninsula are greatly controlled by climatic parameters, but their relationship with these various ACMs has not been investigated in detail. In this paper, we analyze monthly meteorological and limnological long-term datasets (1950-2011 and 1992-2011, respectively) from two lakes on the northern and central Iberian Peninsula (Sanabria and Las Madres) to develop an understanding of the seasonal sensitivity of these freshwater systems to the NAO, EA and SCAND circulation modes. The limnological variability within Lake Sanabria is primarily controlled by fluctuations in the seasonal precipitation and wind, and the primary ACMs associated with the winter limnological processes are the NAO and the SCAND modes, whereas only the EA mode appears to weakly influence processes during the summer. However, Lake Las Madres is affected by precipitation, wind and, to a lesser extent, temperature, whereas the ACMs have less influence. Therefore, we aim to show that the lakes of the Iberian Peninsula are sensitive to these ACMs. The results presented here indicate that the lake dynamics, in some cases, have a higher sensitivity to variations in the ACMs than single local meteorological variables. However, certain local features, such as geography, lake morphology and anthropic influences, are crucial to properly record the signals of these ACMs.

Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx.

PubMed

Kleinman-Ruiz, Daniel; Martínez-Cruz, Begoña; Soriano, Laura; Lucena-Perez, Maria; Cruz, Fernando; Villanueva, Beatriz; Fernández, Jesús; Godoy, José A

2017-07-21

The Iberian lynx (Lynx pardinus) has been acknowledged as the most endangered felid species in the world. An intense contraction and fragmentation during the twentieth century left less than 100 individuals split in two isolated and genetically eroded populations by 2002. Genetic monitoring and management so far have been based on 36 STRs, but their limited variability and the more complex situation of current populations demand more efficient molecular markers. The recent characterization of the Iberian lynx genome identified more than 1.6 million SNPs, of which 1536 were selected and genotyped in an extended Iberian lynx sample. We validated 1492 SNPs and analysed their heterozygosity, Hardy-Weinberg equilibrium, and linkage disequilibrium. We then selected a panel of 343 minimally linked autosomal SNPs from which we extracted subsets optimized for four different typical tasks in conservation applications: individual identification, parentage assignment, relatedness estimation, and admixture classification, and compared their power to currently used STR panels. We ascribed 21 SNPs to chromosome X based on their segregation patterns, and identified one additional marker that showed significant differentiation between sexes. For all applications considered, panels of autosomal SNPs showed higher power than the currently used STR set with only a very modest increase in the number of markers. These novel panels of highly informative genome-wide SNPs provide more powerful, efficient, and flexible tools for the genetic management and non-invasive monitoring of Iberian lynx populations. This example highlights an important outcome of whole-genome studies in genetically threatened species.

Pleistocene and Holocene Iberian flora: a complete picture and review

NASA Astrophysics Data System (ADS)

González Sampériz, Penélope

2010-05-01

A detailed analysis of the location and composition of Iberian vegetation types during the whole Pleistocene and Holocene periods shows a complex patched landscape with persistence of different types of ecosystems, even during glacial times. In addition, recent, high-resolution palaeoecological records are changing the traditional picture of post-glacial vegetation succession in the Iberian Peninsula. The main available charcoal and pollen sequences include, coniferous and deciduous forest, steppes, shrublands, savannahs and glacial refugia during the Pleistocene for Meso-thermophytes (phytodiversity reservoirs), in different proportions. This panorama suggests an environmental complexity that relates biotic responses to climate changes forced by Milankovitch cycles, suborbital forcings and by the latitudinal and physiographic particularities of the Iberian Peninsula. Thus, many factors are critical in the course of vegetational developments and strong regional differences are observed since the Early Pleistocene. Currently, the flora of Iberia is located in two biogeographical/climatic regions: the Eurosiberian and the Mediterranean. The first one includes northern and northwestern areas of the peninsula, where post-glacial responses of vegetation are very similar to Central Europe, although with some particularities due to its proximity to both the Atlantic Ocean and the Mediterranean region. The second one comprises the main territory of Iberia and shows more complex patterns and singularities, now and in the past. Steppe landscapes dominated extensive areas over all the territory during the cold spells of the Quaternary, especially during the Late Pleistocene up to the Last Glacial Maximum, but differences in composition of the dominant taxa (Compositae versus Artemisia) are observed since the Early Pleistocene, probably related to moisture regional gradients. Coastal shelves and intramountainous valleys, even in continental areas, are spots of floristic

Climatic record of the Iberian peninsula from lake Moncortes' sediments

NASA Astrophysics Data System (ADS)

Cao, Min; Huguet, Carme; Rull, Valenti; Valero, Blas; Rosell-Mele, Antoni

2014-05-01

Climatic record of the Iberian peninsula from lake Moncortes' sediments Min Cao1, Carme Huguet1, Valenti Rull2, Blas L. Valero-Garces3, Antoni Rosell-Melé1,4 1Institut de Ciència i Tecnologia Ambientals (ICTA), Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain; 2Institut de Botanic de Barcelona (CSIC), Passeig del Migdia s/n, 08038, Barcelona, Spain, 3 Instituto Pirenaico de Ecologıa (CSIC), Avda. Montañana 1005, 50059 Zaragoza, Spain, 4Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Catalonia, Spain. The continuing buildup of industrial greenhouse gases in the atmosphere and concomitant increase in global temperatures has made much of the world's society aware that decades to centuries of environmental change lie ahead, and that these will have profound economic, political and societal impacts. The Iberian Peninsula lies in the boundary between tropical and subtropical climates and seems to amplify the climatic signals form the northern hemisphere through both atmospheric and water circulation feedbacks, making it an ideal site to monitor Northern hemisphere climate changes. This extreme sensitivity to climatic changes also makes the Iberian Peninsula extremely vulnerable to future climate changes. This is why understanding sensitivity to climate change and the consequences it will have on both climate and the hydrological cycle is key to implement preventive measures. The aim of our study is to come up with a high resolution quantitative reconstruction of climate variability (temperature, production and precipitation) in the Iberian Peninsula from lake sediments. We also want to establish the relation between those changes and the ones observed in both ice cores from Greenland and paleotemperature records from marine sediments of the continental Iberian margin. For these reasons we sampled a core in Moncortes (42.3N, 0.99E), a lake of karstic origin with an average depth of 25m and an area of 0

Meta-Analysis of Mitochondrial DNA Variation in the Iberian Peninsula.

PubMed

Barral-Arca, Ruth; Pischedda, Sara; Gómez-Carballa, Alberto; Pastoriza, Ana; Mosquera-Miguel, Ana; López-Soto, Manuel; Martinón-Torres, Federico; Álvarez-Iglesias, Vanesa; Salas, Antonio

2016-01-01

The Iberian Peninsula has been the focus of attention of numerous studies dealing with mitochondrial DNA (mtDNA) variation, most of them targeting the control region segment. In the present study we sequenced the control region of 3,024 Spanish individuals from areas where available data were still limited. We also compiled mtDNA haplotypes from the literature involving 4,588 sequences and 28 population groups or small regions. We meta-analyzed all these data in order to shed further light on patterns of geographic variation, taking advantage of the large sample size and geographic coverage, in contrast with the atomized sampling strategy of previous work. The results indicate that the main mtDNA haplogroups show primarily clinal geographic patterns across the Iberian geography, roughly along a North-South axis. Haplogroup HV0 (where haplogroup U is nested) is more prevalent in the Franco Cantabrian region, in good agreement with previous findings that identified this area as a climate refuge during the Last Glacial Maximum (LGM), prior to a subsequent demographic re-expansion towards Central Europe and the Mediterranean. Typical sub-Saharan and North African lineages are slightly more prevalent in South Iberia, although at low frequencies; this pattern has been shaped mainly by the transatlantic slave trade and the Arab invasion of the Iberian Peninsula. The results also indicate that summary statistics that aim to measure molecular variation, or AMOVA, have limited sensitivity to detect population substructure, in contrast to patterns revealed by phylogeographic analysis. Overall, the results suggest that mtDNA variation in Iberia is substantially stratified. These patterns might be relevant in biomedical studies given that stratification is a common cause of false positives in case-control mtDNA association studies, and should be also considered when weighting the DNA evidence in forensic casework, which is strongly dependent on haplotype frequencies.

Meta-Analysis of Mitochondrial DNA Variation in the Iberian Peninsula

PubMed Central

Barral-Arca, Ruth; Pischedda, Sara; Gómez-Carballa, Alberto; Pastoriza, Ana; Mosquera-Miguel, Ana; López-Soto, Manuel; Martinón-Torres, Federico; Álvarez-Iglesias, Vanesa; Salas, Antonio

2016-01-01

The Iberian Peninsula has been the focus of attention of numerous studies dealing with mitochondrial DNA (mtDNA) variation, most of them targeting the control region segment. In the present study we sequenced the control region of 3,024 Spanish individuals from areas where available data were still limited. We also compiled mtDNA haplotypes from the literature involving 4,588 sequences and 28 population groups or small regions. We meta-analyzed all these data in order to shed further light on patterns of geographic variation, taking advantage of the large sample size and geographic coverage, in contrast with the atomized sampling strategy of previous work. The results indicate that the main mtDNA haplogroups show primarily clinal geographic patterns across the Iberian geography, roughly along a North-South axis. Haplogroup HV0 (where haplogroup U is nested) is more prevalent in the Franco Cantabrian region, in good agreement with previous findings that identified this area as a climate refuge during the Last Glacial Maximum (LGM), prior to a subsequent demographic re-expansion towards Central Europe and the Mediterranean. Typical sub-Saharan and North African lineages are slightly more prevalent in South Iberia, although at low frequencies; this pattern has been shaped mainly by the transatlantic slave trade and the Arab invasion of the Iberian Peninsula. The results also indicate that summary statistics that aim to measure molecular variation, or AMOVA, have limited sensitivity to detect population substructure, in contrast to patterns revealed by phylogeographic analysis. Overall, the results suggest that mtDNA variation in Iberia is substantially stratified. These patterns might be relevant in biomedical studies given that stratification is a common cause of false positives in case-control mtDNA association studies, and should be also considered when weighting the DNA evidence in forensic casework, which is strongly dependent on haplotype frequencies. PMID

Pleistocene leopards in the Iberian Peninsula: New evidence from palaeontological and archaeological contexts in the Mediterranean region

NASA Astrophysics Data System (ADS)

Sanchis, Alfred; Tormo, Carmen; Sauqué, Víctor; Sanchis, Vicent; Díaz, Rebeca; Ribera, Agustí; Villaverde, Valentín

2015-09-01

This study analyses the fossil record of leopards in the Iberian Peninsula. According to the systematic and morphometric features of new remains, identified mainly in Late Pleistocene palaeontological and archaeological sites of the Mediterranean region, they can be attributed to Panthera pardus Linnaeus 1758. The findings include the most complete leopard skeleton from the Iberian Peninsula and one of the most complete in Europe, found in a chasm (Avenc de Joan Guitón) south of Valencia. The new citations and published data are used to establish the leopard's distribution in the Iberian Peninsula, showing its maximum development during the Late Pleistocene. Some references suggest that the species survived for longer here (Lateglacial-Early Holocene) than in other parts of Europe. Finally, the contexts of appearance and origin of leopard remains are described and the processes of interaction with prehistoric human groups are assessed.

Microsatellite variation in Donax trunculus from the Iberian Peninsula, with particular attention to Galician estuaries (NW Spain)

NASA Astrophysics Data System (ADS)

Nantón, A.; Arias-Pérez, A.; Freire, R.; Fernández-Pérez, J.; Nóvoa, S.; Méndez, J.

2017-10-01

Genetic variation and population structure information is essential for conservation and stock management policies. The wedge clam Donax trunculus is an important fishing resource in the Iberian Peninsula and in some areas, such as the northwestern Spain, wild stocks have decreased greatly. Despite this, information is mainly from the southwestern Atlantic to the northwestern Mediterranean of the Iberian Peninsula. In this study, fifteen microsatellite loci were examined at 17 localities along the Iberian Peninsula to characterize its genetic diversity and population structure. Particular attention was paid to the northwestern Atlantic area, and to test if the pattern previously described for this species is confirmed when localities distributed across the Atlantic coast are included and different microsatellite markers are used. All localities displayed similar allelic richness values and heterozygosity levels but when genetic diversity levels were compared among groups of localities, tests were significant and samples from the northwestern area (Galicia) showed the lowest values. The analysis of population structure indicated that localities from the Atlantic coast are genetically homogeneous although some samples showed significant pairwise Fst values. These values were low and Bayesian analysis of genetic differentiation did not show a consistent structure along the Atlantic coast of the Iberian Peninsula. However, Atlantic samples were genetically different from those located in Mediterranean coast, which may be explained by the existence of the Almeria-Oran front. Moreover, Fuengirola, locality situated in the Alboran Sea between the Strait of Gibraltar and Mediterranean Sea, showed significant differences from all remaining localities included in the study. Overall, the data showed the existence of genetic homogeneity along the Atlantic coast of the Iberian Peninsula and support the three management units (Atlantic Ocean, the Alboran Sea and the northwestern

Effects of cadmium exposure on Iberian ribbed newt (Pleurodeles waltl) testes

PubMed Central

Hirako, Ayano; Takeoka, Yuki; Hayashi, Toshinori; Takeuchi, Takashi; Furukawa, Satoshi; Sugiyama, Akihiko

2017-01-01

To characterize the histomorphologic effects of cadmium on adult newt testes, male Iberian ribbed newts (6 months post-hatching) were intraperitoneally exposed to a single dose of 50 mg/kg of cadmium, with histologic analysis of the testes at 24, 48, 72, and 96 h. Beginning 24 h after cadmium exposure, apoptosis of spermatogonia and spermatocytes was observed, and congestion was observed in the interstitial vessels of the testes. Throughout the experimental period, the rates of pyknotic cells and TUNEL and cleaved caspase-3 positivity were significantly higher in the spermatogonia and spermatocytes of cadmium-treated newts compared with control newts. There were no significant differences between cadmium-treated and control newts in phospho-histone H3 positivity in the spermatogonia and spermatocytes. These results suggest that spermatogonia and spermatocytes in adult Iberian ribbed newts are highly sensitive to cadmium. This is the first report of the histomorphologic characteristics of cadmium-induced testicular dysfunction in newts. PMID:29097846

Daily precipitation extreme events for the Iberian Peninsula and its association with Atmospheric Rivers

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Trigo, Ricardo M.; Liberato, Margarida LR

2014-05-01

Extreme precipitation events in the Iberian Peninsula during the extended winter months have major socio-economic impacts such as floods, landslides, extensive property damage and life losses. These events are usually associated with low pressure systems with Atlantic origin, although some extreme events in summer/autumn months can be linked to Mediterranean low pressure systems. Quite often these events are evaluated on a casuistic base and making use of data from relatively few stations. An objective method for ranking daily precipitation events is presented here based on the extensive use of the most comprehensive database of daily gridded precipitation available for the Iberian Peninsula (IB02) and spanning from 1950 to 2008, with a resolution of 0.2° (approximately 16 x 22 km at latitude 40°N), for a total of 1673 pixels. This database is based on a dense network of rain gauges, combining two national data sets, 'Spain02' for peninsular Spain and Balearic islands, and 'PT02' for mainland Portugal, with a total of more than two thousand stations over Spain and four hundred stations over Portugal, all quality-controlled and homogenized. Through this objective method for ranking daily precipitation events the magnitude of an event is obtained after considering the area affected as well as its intensity in every grid point and taking into account the daily precipitation normalised departure from climatology. Different precipitation rankings are presented considering the entire Iberian Peninsula, Portugal and also the six largest river basins in the Iberian Peninsula. Atmospheric Rivers (AR) are the water vapour (WV) core section of the broader warm conveyor belt occurring over the oceans along the warm sector of extra-tropical cyclones. They are usually W-E oriented steered by pre-frontal low level jets along the trailing cold front and subsequently feed the precipitation in the extra-tropical cyclones. They are relatively narrow regions of concentrated WV

Past, present and future distributions of an Iberian Endemic, Lepus granatensis: ecological and evolutionary clues from species distribution models.

PubMed

Acevedo, Pelayo; Melo-Ferreira, José; Real, Raimundo; Alves, Paulo Célio

2012-01-01

The application of species distribution models (SDMs) in ecology and conservation biology is increasing and assuming an important role, mainly because they can be used to hindcast past and predict current and future species distributions. However, the accuracy of SDMs depends on the quality of the data and on appropriate theoretical frameworks. In this study, comprehensive data on the current distribution of the Iberian hare (Lepus granatensis) were used to i) determine the species' ecogeographical constraints, ii) hindcast a climatic model for the last glacial maximum (LGM), relating it to inferences derived from molecular studies, and iii) calibrate a model to assess the species future distribution trends (up to 2080). Our results showed that the climatic factor (in its pure effect and when it is combined with the land-cover factor) is the most important descriptor of the current distribution of the Iberian hare. In addition, the model's output was a reliable index of the local probability of species occurrence, which is a valuable tool to guide species management decisions and conservation planning. Climatic potential obtained for the LGM was combined with molecular data and the results suggest that several glacial refugia may have existed for the species within the major Iberian refugium. Finally, a high probability of occurrence of the Iberian hare in the current species range and a northward expansion were predicted for future. Given its current environmental envelope and evolutionary history, we discuss the macroecology of the Iberian hare and its sensitivity to climate change.

Past, Present and Future Distributions of an Iberian Endemic, Lepus granatensis: Ecological and Evolutionary Clues from Species Distribution Models

PubMed Central

Acevedo, Pelayo; Melo-Ferreira, José; Real, Raimundo; Alves, Paulo Célio

2012-01-01

The application of species distribution models (SDMs) in ecology and conservation biology is increasing and assuming an important role, mainly because they can be used to hindcast past and predict current and future species distributions. However, the accuracy of SDMs depends on the quality of the data and on appropriate theoretical frameworks. In this study, comprehensive data on the current distribution of the Iberian hare (Lepus granatensis) were used to i) determine the species’ ecogeographical constraints, ii) hindcast a climatic model for the last glacial maximum (LGM), relating it to inferences derived from molecular studies, and iii) calibrate a model to assess the species future distribution trends (up to 2080). Our results showed that the climatic factor (in its pure effect and when it is combined with the land-cover factor) is the most important descriptor of the current distribution of the Iberian hare. In addition, the model’s output was a reliable index of the local probability of species occurrence, which is a valuable tool to guide species management decisions and conservation planning. Climatic potential obtained for the LGM was combined with molecular data and the results suggest that several glacial refugia may have existed for the species within the major Iberian refugium. Finally, a high probability of occurrence of the Iberian hare in the current species range and a northward expansion were predicted for future. Given its current environmental envelope and evolutionary history, we discuss the macroecology of the Iberian hare and its sensitivity to climate change. PMID:23272115

Influence of pre-cure freezing on the profile of volatile compounds during the processing of Iberian hams.

PubMed

Pérez-Palacios, Trinidad; Ruiz, Jorge; Martín, Diana; Grau, Raúl; Antequera, Teresa

2010-04-15

This work was designed to study the effect of pre-cure freezing of raw thighs from Iberian pigs on the profile of volatile compounds during the processing of hams. Generation of volatile compounds during Iberian ham processing was similar in both pre-cure frozen and refrigerated hams, the main differences being at the final stage. The levels of 2-methylbutanal, 2-methyl-1-butanol, 2,3-butanediol and 2-heptanol were significantly higher in dry-cured hams that were pre-cure frozen than in refrigerated ones, whereas the content of most detected esters was statistically lower in pre-cure frozen than in refrigerated hams. The effect of pre-cure freezing of Iberian ham on the profile of volatile compounds during ripening was not remarkable. Few differences were found in the final product, which would not greatly modify the aroma and flavour features of the dry-cured hams. (c) 2010 Society of Chemical Industry.

Marine research in the Iberian Peninsula: A pledge for better times after an economic crisis

NASA Astrophysics Data System (ADS)

Borja, Angel; Marques, Joao-Carlos; Olabarria, Celia; Quintino, Victor

2013-10-01

The “17th Iberian Symposium of Marine Biology Studies” took place in San Sebastian (Spain), in September 2012. This contribution is an introduction to a special issue collating the most challenging papers submitted by Portuguese and Spanish scientists to the symposium. The text was structured as a novel, with the three main parts of a novel: (i) Setup: a historical context, from old times to the 1970's. This part presents the main Iberian scientific contribution to marine science, since the 15th Century, as a precedent to modern scientific research; (ii) Conflict: from the 1970's to the economic crisis. This part presents the evolution of Iberian research production, based upon a bibliometric study, from 1974 to 2012; and (iii) Resolution: what for the future?, which shows the main challenges, proposed by the authors, to the European research initiative 'Horizon 2020', including aspects such as the need of knowledge-base for marine management, the marine research as a potential source of jobs, the ecosystem-based approach, human activities and Marine Spatial Planning, moving from fisheries to aquaculture, or global change issues, among others.

Regional Climate Modelling of the Western Iberian Low-Level Wind Jet

NASA Astrophysics Data System (ADS)

Soares, Pedro M. M.; Lima, Daniela C. A.; Cardoso, Rita M.; Semedo, Álvaro

2016-04-01

The Iberian coastal low-level jet (CLLJ) is one the less studied boundary layer wind jet features in the Eastern Boundary Currents Systems (EBCS). These regions are amongst the most productive ocean ecosystems, where the atmosphere-land-ocean feedbacks, which include marine boundary layer clouds, coastal jets, upwelling and inland soil temperature and moisture, play an important role in defining the regional climate along the sub-tropical mid-latitude western coastal areas. Recently, the present climate western Iberian CLLJ properties were extensively described using a high resolution regional climate hindcast simulation. A summer maximum frequency of occurrence above 30% was found, with mean maximum wind speeds around 15 ms-1, between 300 and 400m heights (at the jet core). Since the 1990s the climate change impact on the EBCS is being studied, nevertheless some lack of consensus still persists regarding the evolution of upwelling and other components of the climate system in these areas. However, recently some authors have shown that changes are to be expected concerning the timing, intensity and spatial homogeneity of coastal upwelling and of CLLJs, in response to future warming, especially at higher latitudes, namely in Iberia and Canaries. In this study, the first climate change assessment study regarding the Western Iberian CLLJ, using a high resolution (9km) regional climate simulation, is presented. The properties of this CLLJ are studied and compared using two 30 years simulations: one historical simulation for the 1971-2000 period, and another simulation for future climate, in agreement with the RCP8.5 scenario, for the 2071-2100 period. Robust and consistent changes are found: 1) the hourly frequency of occurrence of the CLLJ is expected to increase in summer along the western Iberian coast, from mean maximum values of around 35% to approximately 50%; 2) the relative increase of the CLLJ frequency of occurrence is higher in the north off western Iberia

Convergent genomic signatures of domestication in sheep and goats.

PubMed

Alberto, Florian J; Boyer, Frédéric; Orozco-terWengel, Pablo; Streeter, Ian; Servin, Bertrand; de Villemereuil, Pierre; Benjelloun, Badr; Librado, Pablo; Biscarini, Filippo; Colli, Licia; Barbato, Mario; Zamani, Wahid; Alberti, Adriana; Engelen, Stefan; Stella, Alessandra; Joost, Stéphane; Ajmone-Marsan, Paolo; Negrini, Riccardo; Orlando, Ludovic; Rezaei, Hamid Reza; Naderi, Saeid; Clarke, Laura; Flicek, Paul; Wincker, Patrick; Coissac, Eric; Kijas, James; Tosser-Klopp, Gwenola; Chikhi, Abdelkader; Bruford, Michael W; Taberlet, Pierre; Pompanon, François

2018-03-06

The evolutionary basis of domestication has been a longstanding question and its genetic architecture is becoming more tractable as more domestic species become genome-enabled. Before becoming established worldwide, sheep and goats were domesticated in the fertile crescent 10,500 years before present (YBP) where their wild relatives remain. Here we sequence the genomes of wild Asiatic mouflon and Bezoar ibex in the sheep and goat domestication center and compare their genomes with that of domestics from local, traditional, and improved breeds. Among the genomic regions carrying selective sweeps differentiating domestic breeds from wild populations, which are associated among others to genes involved in nervous system, immunity and productivity traits, 20 are common to Capra and Ovis. The patterns of selection vary between species, suggesting that while common targets of selection related to domestication and improvement exist, different solutions have arisen to achieve similar phenotypic end-points within these closely related livestock species.

A versatile telemetry system for continuous measurement of heart rate, body temperature and locomotor activity in free-ranging ruminants

PubMed Central

Signer, Claudio; Ruf, Thomas; Schober, Franz; Fluch, Gerhard; Paumann, Thomas; Arnold, Walter

2012-01-01

Summary 1. Measuring physiological and behavioural parameters in free-ranging animals – and therefore under fully natural conditions – is of general biological concern but difficult to perform. 2. We have developed a minimally invasive telemetry system for ruminants that is capable of measuring heart rate (HR), body temperature (Tb) and locomotor activity (LA). A ruminal transmitter unit was per os placed into the reticulum and therefore located in close proximity to the heart. The unit detected HR by the use of an acceleration sensor and also measured Tb. HR and Tb signals were transmitted via short-distance UHF link to a repeater system located in a collar unit. The collar unit decoded and processed signals received from the ruminal unit, measured LA with two different activity sensors and transmitted pulse interval-modulated VHF signals over distances of up to 10 km. 3. HR data measured with the new device contained noise caused by reticulum contractions and animal movements that triggered the acceleration sensor in the ruminal unit. We have developed a software filter to remove this noise. Hence, the system was only capable of measuring HR in animals that showed little or no activity and in the absence of rumen contractions. Reliability of this ‘stationary HR’ measurement was confirmed with a second independent measurement of HR detected by an electrocardiogram in a domestic sheep (Ovis aries). 4. In addition, we developed an algorithm to correctly classify an animal as ‘active’ or ‘at rest’ during each 3-min interval from the output of the activity sensors. Comparison with direct behavioural observations on free-ranging Alpine ibex (Capra ibex) showed that 87% of intervals were classified correctly. 5. First results from applications of this new technique in free-ranging Alpine ibex underlined its suitability for reliable and long-term monitoring of physiological and behavioural parameters in ruminants under harsh field conditions. With the

Detection of Iberian ham aroma by a semiconductor multisensorial system.

PubMed

Otero, Laura; Horrillo, M A Carmen; García, María; Sayago, Isabel; Aleixandre, Manuel; Fernández, M A Jesús; Arés, Luis; Gutiérrez, Javier

2003-11-01

A semiconductor multisensorial system, based on tin oxide, to control the quality of dry-cured Iberian hams is described. Two types of ham (submitted to different drying temperatures) were selected. Good responses were obtained from the 12 elements forming the multisensor for different operating temperatures. Discrimination between the two types of ham was successfully realised through principal component analysis (PCA).

The use of normalized climatological anomalies to rank precipitation events in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Trigo, Ricardo M.; Liberato, Margarida L. R.

2013-04-01

Extreme precipitation events in the Iberian Peninsula during winter months have major socio-economic impacts such as flooding, landslides, extensive property damage and life losses, and are usually associated to deep low pressure systems with Atlantic origin, although some extreme events in summer/autumn months are fed by the Mediterranean. Quite often these events are evaluated on a casuistic base and with relatively few stations. An objective method for ranking daily precipitation events is presented based on the extensive use of the most comprehensive database of daily precipitation available for the Iberian Peninsula (IB02) and spanning from 1950 to 2003, with a resolution of 0.2° (approximately 16 x 22 km at latitude 40°N), for a total of 1673 pixels. This database is based on a dense network of rain gauges, combining two national data sets, 'Spain02' for peninsular Spain and Balearic islands (Herrera et al., 2012), and 'PT02' for mainland Portugal (Belo-Pereira et al., 2011), with a total of more than two thousand stations over Spain and four hundred stations over Portugal, all quality-controlled and homogenized. The daily precipitation data from 1950 to 2003 are compared with a 30-year (1961-90) precipitation climatology to achieve a daily normalized departure from the climatology. The magnitude of an event is given daily by an index that is obtained after multiplying 1) the area (in percentage) that has precipitation anomalies above two standard deviations by 2) the mean values of these anomalies over this area. With this criterion we are able to evaluate not only the spatial extent of the precipitation events but also their spatially integrated intensity. In addition, to stress out the hydrological responses to precipitation, rankings taking into account the sum of the normalized anomalies over different time periods (3 days, 5 days and 10 days) were also computed. Here different precipitation rankings will be presented considering the entire Iberian

Acid mine drainage in the Iberian Pyrite Belt: 1. Hydrochemical characteristics and pollutant load of the Tinto and Odiel rivers.

PubMed

Nieto, Jose M; Sarmiento, Aguasanta M; Canovas, Carlos R; Olias, Manuel; Ayora, Carlos

2013-11-01

Acid mine drainage in the Iberian Pyrite Belt is probably the worst case in the world of surface water pollution associated with mining of sulphide mineral deposits. The Iberian Pyrite Belt is located in SW Iberian Peninsula, and it has been mined during the last 4,500 years. The central and eastern part of the Iberian Pyrite Belt is drained by the Tinto and Odiel rivers, which receive most of the acidic leachates from the mining areas. As a result, the main channels of the Tinto and Odiel rivers are very rich in metals and highly acidic until reaching the Atlantic Ocean. A significant amount of the pollutant load transported by these two rivers is delivered during the rainy season, as is usual in rivers of Mediterranean climate regions. Therefore, in order to have an accurate estimation of the pollutant loads transported by the Tinto and Odiel rivers, a systematic sampling on a weekly basis and a high temporal resolution sampling of floods events were both performed. Results obtained show that metal fluxes are strongly dependent on the study period, highlighting the importance of inter-annual studies involving dry and wet years.

Integrated Analysis of Climate, Soil, Topography and Vegetative Growth in Iberian Viticultural Regions

PubMed Central

Fraga, Helder; Malheiro, Aureliano C.; Moutinho-Pereira, José; Cardoso, Rita M.; Soares, Pedro M. M.; Cancela, Javier J.; Pinto, Joaquim G.; Santos, João A.

2014-01-01

The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate. PMID:25251495

Integrated analysis of climate, soil, topography and vegetative growth in Iberian viticultural regions.

PubMed

Fraga, Helder; Malheiro, Aureliano C; Moutinho-Pereira, José; Cardoso, Rita M; Soares, Pedro M M; Cancela, Javier J; Pinto, Joaquim G; Santos, João A

2014-01-01

The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate.

Ecophysiology Tracks Phylogeny and Meets Ecological Models in an Iberian Gecko.

PubMed

Rato, C; Carretero, M A

2015-01-01

Because fitness of ectotherms, including reptiles, is highly dependent on temperature and water availability, the study of ecophysiological traits, such as preferred temperature (T p) and water loss rates (WLRs), may provide mechanistic evidence on the restricting factors to the species ranges. The Moorish gecko, Tarentola mauritanica, is a species complex with a circum-Mediterranean distribution. In the Iberian Peninsula, two sister parapatric forms of the complex, known as the Iberian and the European clades, are found. Ecological models previously performed using presence records and bioclimatic variables suggest niche divergence between both lineages correlated with precipitation rather than with temperature. In this study, we test this correlative hypothesis using ecophysiological evidence. In the laboratory, we analyzed the T p and WLRs for 84 adult males from seven distinct populations ascribed to one of the two lineages present in Iberia. Specifically, we evaluated the existence of trait conservatism versus adaptation among populations, lineages, or both. In addition, we tested for a trade-off between water and thermal traits and assessed whether climate regime of sampling localities had any influence on the ecophysiological patterns found. We found that T p is quite conserved at both the population and lineage levels and independent from body size. In contrast, water loss experiments revealed some variation among populations, but the regression analysis failed to detect correlation between T p and WLR at any level. Overall, the European lineage displayed a trend for higher water loss and was more diverse among populations when compared with the Iberian lineage. The lack of correspondence between ecophysiological traits and local climatic conditions favors phylogenetic signal versus adaptation. This suggests divergent evolutionary responses to the environment, mainly acting on water ecology, in both lineages, which may account for the differences in their

Mesozoic and Cenozoic exhumation history of the SW Iberian Variscides inferred from low-temperature thermochronology

NASA Astrophysics Data System (ADS)

Vázquez-Vílchez, Mercedes; Jabaloy-Sánchez, Antonio; Azor, Antonio; Stuart, Finlay; Persano, Cristina; Alonso-Chaves, Francisco M.; Martín-Parra, Luis Miguel; Matas, Jerónimo; García-Navarro, Encarnación

2015-11-01

The post-Paleozoic tectonothermal evolution of the SW Iberian Variscides is poorly known mainly due to the scarce low-temperature geochronological data available. We have obtained new apatite fission-tracks and apatite (U-Th)/He ages to constrain the Mesozoic and Cenozoic tectonic evolution of this portion of the Iberian Massif located just north of the Betic-Rif Alpine orogen. We have obtained nine apatite fission-track ages on samples from Variscan and pre-Variscan granitoids. These ages range from 174.4 (± 10.8) to 54.1 (± 4.9) Ma, with mean track lengths between 10.3 and 13.9 μm. We have also performed 5 (U-Th)/He datings on some of the same samples, obtaining ages between 74.6 (± 1.6) and 18.5 (± 1.4) Ma. Time-temperature path modeling of these low-temperature geochronological data leads us to envisage four post-Paleozoic tectonically controlled exhumation episodes in the SW Iberian Variscides. Three of these episodes occurred in Mesozoic times (Middle Triassic to Early Jurassic, Early Cretaceous, and Late Cretaceous) at rates of ≈ 1.1 to 2.5 °C Ma- 1, separated by periods with almost no cooling. We relate these Mesozoic cooling events to the formation of important marginal reliefs during the rifting and opening of the central and northern Atlantic realm. The fourth exhumation episode occurred in Cenozoic times at rates of ≈ 3.2 to 3.6 °C Ma- 1, being only recorded in samples next to faults with topographic escarpments. These samples cooled below 80 °C at ≈ 20 Ma at rates of 3-13 °C Ma- 1 due to roughly N-S oriented compressional stresses affecting the whole Iberian plate, which, in the particular case of SW Iberia, reactivated some of the previous Late Paleozoic thrusts.

Characterization of Staphylococcus spp. and Micrococcus spp. isolated from Iberian ham throughout the ripening process.

PubMed

Rodríguez, M; Núñez, F; Córdoba, J J; Sanabria, C; Bermúdez, E; Asensio, M A

1994-12-01

The Iberian dry cured ham is an uncooked meat product highly appreciated because of its characteristic flavour. This product is obtained from highly marbled Iberian pig hindlegs after 18-24 months of maturation under natural environmental conditions. The role of Micrococcaceae in the development of the aroma characteristics of this products remains unclear. Identification of Gram-positive, catalase-positive cocci isolated from Mannitol Salt Agar plates showed that Staphylococcus xylosus followed by Staphylococcus equorum are the predominant organisms, even after 16 months of maturing. A remarkable variety of types of both staphylococci and micrococci are detected at any sampling time. The metabolic activities of these organisms could contribute to the characteristics of the final product.

INTERSTELLAR NEUTRAL HELIUM IN THE HELIOSPHERE FROM IBEX OBSERVATIONS. IV. FLOW VECTOR, MACH NUMBER, AND ABUNDANCE OF THE WARM BREEZE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kubiak, Marzena A.; Swaczyna, P.; Bzowski, M.

2016-04-15

Following the high-precision determination of the velocity vector and temperature of the pristine interstellar neutral (ISN) He via a coordinated analysis summarized by McComas et al., we analyzed the Interstellar Boundary Explorer (IBEX) observations of neutral He left out from this analysis. These observations were collected during the ISN observation seasons 2010–2014 and cover the region in the Earth's orbit where the Warm Breeze (WB) persists. We used the same simulation model and a parameter fitting method very similar to that used for the analysis of ISN He. We approximated the parent population of the WB in front of themore » heliosphere with a homogeneous Maxwell–Boltzmann distribution function and found a temperature of ∼9500 K, an inflow speed of 11.3 km s{sup −1}, and an inflow longitude and latitude in the J2000 ecliptic coordinates 251.°6, 12.°0. The abundance of the WB relative to ISN He is 5.7% and the Mach number is 1.97. The newly determined inflow direction of the WB, the inflow directions of ISN H and ISN He, and the direction to the center of the IBEX Ribbon are almost perfectly co-planar, and this plane coincides within relatively narrow statistical uncertainties with the plane fitted only to the inflow directions of ISN He, ISN H, and the WB. This co-planarity lends support to the hypothesis that the WB is the secondary population of ISN He and that the center of the Ribbon coincides with the direction of the local interstellar magnetic field (ISMF). The common plane for the direction of the inflow of ISN gas, ISN H, the WB, and the local ISMF is given by the normal direction: ecliptic longitude 349.°7 ± 0.°6 and latitude 35.°7 ± 0.6 in the J2000 coordinates, with a correlation coefficient of 0.85.« less

The Galicia-Ossa-Morena Zone: Proposal for a new zone of the Iberian Massif. Variscan implications

NASA Astrophysics Data System (ADS)

Arenas, Ricardo; Díez Fernández, Rubén; Rubio Pascual, Francisco J.; Sánchez Martínez, Sonia; Martín Parra, Luis Miguel; Matas, Jerónimo; González del Tánago, José; Jiménez-Díaz, Alberto; Fuenlabrada, Jose M.; Andonaegui, Pilar; Garcia-Casco, Antonio

2016-06-01

Correlation of a group of allochthonous terranes (referred to as basal, ophiolitic and upper units) exposed in the NW and SW of the Iberian Massif, is used to propose a new geotectonic zone in the southern branch of the Variscan Orogen: the Galicia-Ossa-Morena Zone. Recent advances in SW Iberia identify most of the former Ossa-Morena Zone as another allochthonous complex of the Iberian Massif, the Ossa-Morena Complex, equivalent to the Cabo Ortegal, Órdenes, Malpica-Tui, Bragança and Morais complexes described in NW Iberia. The new geotectonic zone and its counterparts along the rest of the Variscan Orogen constitute an Internal Variscan Zone with ophiolites and units affected by high-P metamorphism. The Galicia-Ossa-Morena Zone includes a Variscan suture and pieces of continental crust bearing the imprint of Ediacaran-Cambrian events related to the activity of peri-Gondwanan magmatic arcs (Cadomian orogenesis). In the Iberian Massif, the general structure of this geotectonic zone represents a duplication of the Gondwanan platform, the outboard sections being juxtaposed on top of domains located closer to the mainland before amalgamation. This interpretation offers an explanation that overcomes some issues regarding the differences between the stratigraphic and paleontological record of the central and southern sections of the Iberian Massif. Also, equivalent structural relationships between other major geotectonic domains of the rest of the Variscan Orogen are consistent with our interpretation and allow suspecting similar configurations along strike of the orogen. A number of issues may be put forward in this respect that potentially open new lines of thinking about the architecture of the Variscan Orogen.

Increasing sea surface temperature and range shifts of intertidal gastropods along the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Rubal, Marcos; Veiga, Puri; Cacabelos, Eva; Moreira, Juan; Sousa-Pinto, Isabel

2013-03-01

There are well-documented changes in abundance and geographical range of intertidal invertebrates related to climate change at north Europe. However, the effect of sea surface warming on intertidal invertebrates has been poorly studied at lower latitudes. Here we analyze potential changes in the abundance patterns and distribution range of rocky intertidal gastropods related to climate change along the Iberian Peninsula. To achieve this aim, the spatial distribution and range of sub-tropical, warm- and cold-water species of intertidal gastropods was explored by a fully hierarchical sampling design considering four different spatial scales, i.e. from region (100 s of km apart) to quadrats (ms apart). Variability on their patterns of abundance was explored by analysis of variance, changes on their distribution ranges were detected by comparing with previous records and their relationship with sea water temperature was explored by rank correlation analyses. Mean values of sea surface temperature along the Iberian coast, between 1949 and 2010, were obtained from in situ data compiled for three different grid squares: south Portugal, north Portugal, and Galicia. Lusitanian species did not show significant correlation with sea water temperature or changes on their distributional range or abundance, along the temperature gradient considered. The sub-tropical species Siphonaria pectinata has, however, increased its distribution range while boreal cold-water species showed the opposite pattern. The latter was more evident for Littorina littorea that was almost absent from the studied rocky shores of the Iberian Peninsula. Sub-tropical and boreal species showed significant but opposite correlation with sea water temperature. We hypothesized that the energetic cost of frequent exposures to sub-lethal temperatures might be responsible for these shifts. Therefore, intertidal gastropods at the Atlantic Iberian Peninsula coast are responding to the effect of global warming as it

The phylogeographical history of the Iberian steppe plant Ferula loscosii (Apiaceae): a test of the abundant-centre hypothesis.

PubMed

Pérez-Collazos, E; Sanchez-Gómez, P; Jiménez, F; Catalán, P

2009-03-01

The geology and climate of the western Mediterranean area were strongly modified during the Late Tertiary and the Quaternary. These geological and climatic events are thought to have induced changes in the population histories of plants in the Iberian Peninsula. However, fine-scale genetic spatial architecture across western Mediterranean steppe plant refugia has rarely been investigated. A population genetic analysis of amplified fragment length polymorphism variation was conducted on present-day, relict populations of Ferula loscosii (Apiaceae). This species exhibits high individual/population numbers in the middle Ebro river valley and, according to the hypothesis of an abundant-centre distribution, these northern populations might represent a long-standing/ancestral distribution centre. However, our results suggest that the decimated southern and central Iberian populations are more variable and structured than the northeastern ones, representing the likely vestiges of an ancestral distribution centre of the species. Phylogeographical analysis suggests that F. loscosii likely originated in southern Spain and then migrated towards the central and northeastern ranges, further supporting a Late Miocene southern-bound Mediterranean migratory way for its oriental steppe ancestors. In addition, different glacial-induced conditions affected the southern and northern steppe Iberian refugia during the Quaternary. The contrasting genetic homogeneity of the Ebro valley range populations compared to the southern Iberian ones possibly reflects more severe bottlenecks and subsequent genetic drift experienced by populations of the northern Iberia refugium during the Pleistocene, followed by successful postglacial expansion from only a few founder plants.

Drought trends in the Iberian Peninsula over the last 112 years

NASA Astrophysics Data System (ADS)

Gouveia, Célia M.; Ramos, Patrícia; Russo, Ana; Trigo, Ricardo M.

2015-04-01

The Iberian Peninsula is often affected by drought events with strong influences in ecosystems and the related social and economic impacts (Gouveia et al. 2012, Trigo et al., 2013). In the last decades the severity of droughts in Iberia have increased due to the higher atmospheric evaporative demand (Vicente-Serrano et al., 2014). The need for a deeper knowledge of drought frequency, duration and intensity over the Iberian Peninsula during the last 112 years is reinforced by the findings showing that the period of 1970-2010 over the Mediterranean region was considered drier when compared with 1901-1970. Together with the increasing dryness, the projections point for an increase of drought conditions during the twenty-first century (Hoerling et al., 2012) will tend to exacerbate these problems. The evolution of drought in the Iberian Peninsula was analyzed, using the Standardized Precipitation Evapotranspiration Index (SPEI) and the Standardized Precipitation Index (SPI), for the period 1901-2012, and the sub-periods 1901-1937, 1938-1974 and 1975-2012. We have used SPI and SPEI for the time scale of 12 months, as obtained from CRU TS3.21 database between 1901 and 2012, using a spatial resolution of 0.5°. The drought indices were analyzed in order to identify significant trends during the entire period and sub-periods. Trends in annual precipitation and PET were also performed. Drought's duration, magnitude and time spanned between drought events were computed. SPI and SPEI significant trends show areas with opposite signals in the period 1901-2012, following precipitation patterns. Precipitation trends are significant and positive in the Northwestern region of the IP, and significant and negative in the Southern areas. SPEI identified dryer conditions and an increase in the area affected by droughts, which is in agreement with the increase in PET on the majority of the territory. The same spatial differences were identified in the drought duration, magnitude and

Performance traits and metabolic responses in goats (Capra hircus) supplemented with inorganic trivalent chromium.

PubMed

Haldar, Sudipto; Mondal, Souvik; Samanta, Saikat; Ghosh, Tapan Kumar

2009-11-01

The effects of supplemental chromium (Cr) as chromic chloride hexahydrate in incremental dose levels (0, 0.5, 1.0, and 1.5 mg/day for 240 days) on metabolism of nutrients and trace elements were determined in dwarf Bengal goats (Capra hircus, castrated males, average age 3 months, n = 24, initial mean body weight 6.4 +/- 0.22 kg). Live weight increased linearly (p < 0.05) with the level of supplemental Cr. Organic matter and crude protein digestibility, intake of total digestible nutrients, and retention of N (g/g N intake) increased (p < 0.05) in a dose-dependent linear manner. Serum cholesterol and tryacylglycerol concentrations changed inversely with the dose of supplemental Cr (p < 0.01). Supplemental Cr positively influenced retention of copper and iron (p < 0.05) causing linear increase (p < 0.01) in their serum concentrations. It was concluded that Cr supplementation may improve utilization of nutrients including the trace elements and may also elicit a hypolidemic effect in goats. However, further study with regards to optimization of dose is warranted.

Transient response of the Northwestern Iberian upwelling regime.

PubMed

Ferreira Cordeiro, Nuno Gonçalo; Dubert, Jesus; Nolasco, Rita; Desmond Barton, Eric

2018-01-01

The hydrography and dynamics of NW Iberian margin were explored for July 2009, based on a set of in situ and remote sensing observations. Zonal sections of standard CTD casts, towed CTD (SeaSoar), Acoustic Doppler Current Profilers (ADCP) and Lagrangian surveys were made to characterize cycles of upwelling and relaxation in this region. Two periods of northerly winds, bounded by relaxation periods, were responsible for the formation of an upwelling front extending to the shelf edge. An equatorward flow was quickly set up on the shelf responding to the northerly wind pulses. South of Cape Silleiro, the development and subsequent relaxation of an upwelling event was intensively surveyed in the shelf, following a Lagrangian drifter transported by the upwelling jet. This region is part of an upwelling center extending from Cape Silleiro to Porto, where the surface temperature was colder than the neighboring regions, under upwelling favorable winds. As these winds relaxed, persistent poleward flow developed, originating south of the upwelling center and consisting in an inner-shelf tongue of warm waters. During an event of strong southerly wind, the poleward flow was observed to extend to the whole continental shelf. Although the cruise was executed during summertime, the presence of river-plumes was observed over the shelf. The interaction of the plumes with the circulation on the shelf was also described in terms of coastal convergence and offshore advection. The sampling of the offshore and slope regions showed the presence of the Iberian poleward current offshore and a persistent equatorward flow over the upper slope.

The Role of Pickup Ion Dynamics Outside of the Heliopause in the Limit of Weak Pitch Angle Scattering: Implications for the Source of the IBEX Ribbon.

PubMed

Zirnstein, E J; Heerikhuisen, J; Dayeh, M A

2018-01-01

We present a new model of the Interstellar Boundary Explorer ( IBEX ) ribbon based on the secondary energetic neutral atom (ENA) mechanism, under the assumption that there is negligible pitch angle scattering of pickup ions (PUIs) outside the heliopause. Using the results of an MHD-plasma/kinetic-neutral simulation of the heliosphere, we generate PUIs in the outer heliosheath, solve their transport using guiding center theory, and compute ribbon ENA fluxes at 1 AU. We implement several aspects of the PUI dynamics, including (1) parallel motion along the local interstellar magnetic field (ISMF), (2) advective transport with the interstellar plasma, (3) the mirror force acting on PUIs propagating along the ISMF, and (4) betatron acceleration of PUIs as they are advected within an increasing magnetic field towards the heliopause. We find that ENA fluxes at 1 AU are reduced when PUIs are allowed to move along the ISMF, and ENA fluxes are reduced even more by the inclusion of the mirror force, which pushes particles away from IBEX lines-of-sight. Inclusion of advection and betatron acceleration do not result in any significant change in the ribbon. Interestingly, the mirror force reduces the ENA fluxes from the inner edge of the ribbon more than its outer edge, effectively reducing the ribbon's width by ∼6° and increasing its radius projected on the sky. This is caused by the asymmetric draping of the ISMF around the heliopause, such that ENAs from the ribbon's inner edge originate closer to the heliopause, where the mirror force is strongest.

The Role of Pickup Ion Dynamics Outside of the Heliopause in the Limit of Weak Pitch Angle Scattering: Implications for the Source of the IBEX Ribbon

NASA Astrophysics Data System (ADS)

Zirnstein, E. J.; Heerikhuisen, J.; Dayeh, M. A.

2018-03-01

We present a new model of the Interstellar Boundary Explorer (IBEX) ribbon based on the secondary energetic neutral atom (ENA) mechanism, under the assumption that there is negligible pitch angle scattering of pickup ions (PUIs) outside the heliopause. Using the results of an MHD-plasma/kinetic-neutral simulation of the heliosphere, we generate PUIs in the outer heliosheath, solve their transport using guiding center theory, and compute ribbon ENA fluxes at 1 au. We implement several aspects of the PUI dynamics, including (1) parallel motion along the local interstellar magnetic field (ISMF), (2) advective transport with the interstellar plasma, (3) the mirror force acting on PUIs propagating along the ISMF, and (4) betatron acceleration of PUIs as they are advected within an increasing magnetic field toward the heliopause. We find that ENA fluxes at 1 au are reduced when PUIs are allowed to move along the ISMF, and ENA fluxes are reduced even more by the inclusion of the mirror force, which pushes particles away from IBEX lines of sight. Inclusion of advection and betatron acceleration do not result in any significant change in the ribbon. Interestingly, the mirror force reduces the ENA fluxes from the inner edge of the ribbon more than those from its outer edge, effectively reducing the ribbon’s width by ∼6° and increasing its radius projected on the sky. This is caused by the asymmetric draping of the ISMF around the heliopause, such that ENAs from the ribbon’s inner edge originate closer to the heliopause, where the mirror force is strongest.

Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia.

PubMed

Chávez-Galarza, Julio; Henriques, Dora; Johnston, J Spencer; Carneiro, Miguel; Rufino, José; Patton, John C; Pinto, M Alice

2015-06-01

Dissecting diversity patterns of organisms endemic to Iberia has been truly challenging for a variety of taxa, and the Iberian honey bee is no exception. Surveys of genetic variation in the Iberian honey bee are among the most extensive for any honey bee subspecies. From these, differential and complex patterns of diversity have emerged, which have yet to be fully resolved. Here, we used a genome-wide data set of 309 neutrally tested single nucleotide polymorphisms (SNPs), scattered across the 16 honey bee chromosomes, which were genotyped in 711 haploid males. These SNPs were analysed along with an intergenic locus of the mtDNA, to reveal historical patterns of population structure across the entire range of the Iberian honey bee. Overall, patterns of population structure inferred from nuclear loci by multiple clustering approaches and geographic cline analysis were consistent with two major clusters forming a well-defined cline that bisects Iberia along a northeastern-southwestern axis, a pattern that remarkably parallels that of the mtDNA. While a mechanism of primary intergradation or isolation by distance could explain the observed clinal variation, our results are more consistent with an alternative model of secondary contact between divergent populations previously isolated in glacial refugia, as proposed for a growing list of other Iberian taxa. Despite current intense honey bee management, human-mediated processes have seemingly played a minor role in shaping Iberian honey bee genetic structure. This study highlights the complexity of the Iberian honey bee patterns and reinforces the importance of Iberia as a reservoir of Apis mellifera diversity. © 2015 John Wiley & Sons Ltd.

Wear Fast, Die Young: More Worn Teeth and Shorter Lives in Iberian Compared to Scottish Red Deer

PubMed Central

Pérez-Barbería, F. J.; Carranza, J.; Sánchez-Prieto, C.

2015-01-01

Teeth in Cervidae are permanent structures that are not replaceable or repairable; consequently their rate of wear, due to the grinding effect of food and dental attrition, affects their duration and can determine an animal's lifespan. Tooth wear is also a useful indicator of accumulative life energy investment in intake and mastication and their interactions with diet. Little is known regarding how natural and sexual selection operate on dental structures within a species in contrasting environments and how these relate to life history traits to explain differences in population rates of tooth wear and longevity. We hypothesised that populations under harsh environmental conditions should be selected for more hypsodont teeth while sexual selection may maintain similar sex differences within different populations. We investigated the patterns of tooth wear in males and females of Iberian red deer (Cervus elaphus hispanicus) in Southern Spain and Scottish red deer (C. e. scoticus) across Scotland, that occur in very different environments, using 10343 samples from legal hunting activities. We found higher rates of both incisor and molar wear in the Spanish compared to Scottish populations. However, Scottish red deer had larger incisors at emergence than Iberian red deer, whilst molars emerged at a similar size in both populations and sexes. Iberian and Scottish males had earlier tooth depletion than females, in support of a similar sexual selection process in both populations. However, whilst average lifespan for Iberian males was 4 years shorter than that for Iberian females and Scottish males, Scottish males only showed a reduction of 1 year in average lifespan with respect to Scottish females. More worn molars were associated with larger mandibles in both populations, suggesting that higher intake and/or greater investment in food comminution may have favoured increased body growth, before later loss of tooth efficiency due to severe wear. These results

Wear Fast, Die Young: More Worn Teeth and Shorter Lives in Iberian Compared to Scottish Red Deer.

PubMed

Pérez-Barbería, F J; Carranza, J; Sánchez-Prieto, C

2015-01-01

Teeth in Cervidae are permanent structures that are not replaceable or repairable; consequently their rate of wear, due to the grinding effect of food and dental attrition, affects their duration and can determine an animal's lifespan. Tooth wear is also a useful indicator of accumulative life energy investment in intake and mastication and their interactions with diet. Little is known regarding how natural and sexual selection operate on dental structures within a species in contrasting environments and how these relate to life history traits to explain differences in population rates of tooth wear and longevity. We hypothesised that populations under harsh environmental conditions should be selected for more hypsodont teeth while sexual selection may maintain similar sex differences within different populations. We investigated the patterns of tooth wear in males and females of Iberian red deer (Cervus elaphus hispanicus) in Southern Spain and Scottish red deer (C. e. scoticus) across Scotland, that occur in very different environments, using 10343 samples from legal hunting activities. We found higher rates of both incisor and molar wear in the Spanish compared to Scottish populations. However, Scottish red deer had larger incisors at emergence than Iberian red deer, whilst molars emerged at a similar size in both populations and sexes. Iberian and Scottish males had earlier tooth depletion than females, in support of a similar sexual selection process in both populations. However, whilst average lifespan for Iberian males was 4 years shorter than that for Iberian females and Scottish males, Scottish males only showed a reduction of 1 year in average lifespan with respect to Scottish females. More worn molars were associated with larger mandibles in both populations, suggesting that higher intake and/or greater investment in food comminution may have favoured increased body growth, before later loss of tooth efficiency due to severe wear. These results

Parasite species of the endangered Iberian wolf (Canis lupus signatus) and a sympatric widespread carnivore.

PubMed

Figueiredo, Ana; Oliveira, Lucia; Madeira de Carvalho, Luís; Fonseca, Carlos; Torres, Rita Tinoco

2016-08-01

Parasites have a profound impact on wildlife population dynamics. However, until some years ago, studies on the occurrence and prevalence of wildlife parasites were neglected comparatively with the studies on humans and domestic animals. In this study, we determined the parasite prevalence of two sympatric wild canids: the endangered Iberian wolf (Canis lupus signatus) and the widespread red fox (Vulpes vulpes), in central Portugal. From November 2014 to July 2015, fresh fecal samples from both species were collected monthly in several transects distributed throughout the study area. All samples were submitted to several coprological techniques. In total, 6 helminth parasites (Crenosoma vulpis, Angiostrongylus vasorum, Toxocara canis, Trichuris vulpis, Ancylostomatidae, Toxascaris leonina), and a protozoa (Balantidium coli) were identified based on size and morphology. The red fox was infected by seven different parasites while the Iberian wolf was infected by four. All parasites present in wolf were also present in the red fox. C. vulpis had the higher prevalence in red fox, while Ancylostomatidae were the most prevalent parasites in wolf. To our knowledge, this is the first study in this isolated subpopulation of the Iberian wolf. Our results show that both carnivores carry parasites that are of concern as they are pathogenic to humans and other wild and domestic animals. We suggest that surveillance programs must also include monitoring protocols of wildlife; particularly endangered species.

Lessons learned from the ATLAS performance studies of the Iberian Cloud for the first LHC running period

NASA Astrophysics Data System (ADS)

Sánchez-Martínez, V.; Borges, G.; Borrego, C.; del Peso, J.; Delfino, M.; Gomes, J.; González de la Hoz, S.; Pacheco Pages, A.; Salt, J.; Sedov, A.; Villaplana, M.; Wolters, H.

2014-06-01

In this contribution we describe the performance of the Iberian (Spain and Portugal) ATLAS cloud during the first LHC running period (March 2010-January 2013) in the context of the GRID Computing and Data Distribution Model. The evolution of the resources for CPU, disk and tape in the Iberian Tier-1 and Tier-2s is summarized. The data distribution over all ATLAS destinations is shown, focusing on the number of files transferred and the size of the data. The status and distribution of simulation and analysis jobs within the cloud are discussed. The Distributed Analysis tools used to perform physics analysis are explained as well. Cloud performance in terms of the availability and reliability of its sites is discussed. The effect of the changes in the ATLAS Computing Model on the cloud is analyzed. Finally, the readiness of the Iberian Cloud towards the first Long Shutdown (LS1) is evaluated and an outline of the foreseen actions to take in the coming years is given. The shutdown will be a good opportunity to improve and evolve the ATLAS Distributed Computing system to prepare for the future challenges of the LHC operation.

The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age.

PubMed

Szécsényi-Nagy, Anna; Roth, Christina; Brandt, Guido; Rihuete-Herrada, Cristina; Tejedor-Rodríguez, Cristina; Held, Petra; García-Martínez-de-Lagrán, Íñigo; Arcusa Magallón, Héctor; Zesch, Stephanie; Knipper, Corina; Bánffy, Eszter; Friederich, Susanne; Meller, Harald; Bueno Ramírez, Primitiva; Barroso Bermejo, Rosa; de Balbín Behrmann, Rodrigo; Herrero-Corral, Ana M; Flores Fernández, Raúl; Alonso Fernández, Carmen; Jiménez Echevarria, Javier; Rindlisbacher, Laura; Oliart, Camila; Fregeiro, María-Inés; Soriano, Ignacio; Vicente, Oriol; Micó, Rafael; Lull, Vicente; Soler Díaz, Jorge; López Padilla, Juan Antonio; Roca de Togores Muñoz, Consuelo; Hernández Pérez, Mauro S; Jover Maestre, Francisco Javier; Lomba Maurandi, Joaquín; Avilés Fernández, Azucena; Lillios, Katina T; Silva, Ana Maria; Magalhães Ramalho, Miguel; Oosterbeek, Luiz Miguel; Cunha, Claudia; Waterman, Anna J; Roig Buxó, Jordi; Martínez, Andrés; Ponce Martínez, Juana; Hunt Ortiz, Mark; Mejías-García, Juan Carlos; Pecero Espín, Juan Carlos; Cruz-Auñón Briones, Rosario; Tomé, Tiago; Carmona Ballestero, Eduardo; Cardoso, João Luís; Araújo, Ana Cristina; Liesau von Lettow-Vorbeck, Corina; Blasco Bosqued, Concepción; Ríos Mendoza, Patricia; Pujante, Ana; Royo-Guillén, José I; Esquembre Beviá, Marco Aurelio; Dos Santos Goncalves, Victor Manuel; Parreira, Rui; Morán Hernández, Elena; Méndez Izquierdo, Elena; Vega Y Miguel, Jorge; Menduiña García, Roberto; Martínez Calvo, Victoria; López Jiménez, Oscar; Krause, Johannes; Pichler, Sandra L; Garrido-Pena, Rafael; Kunst, Michael; Risch, Roberto; Rojo-Guerra, Manuel A; Haak, Wolfgang; Alt, Kurt W

2017-11-15

Agriculture first reached the Iberian Peninsula around 5700 BCE. However, little is known about the genetic structure and changes of prehistoric populations in different geographic areas of Iberia. In our study, we focus on the maternal genetic makeup of the Neolithic (~ 5500-3000 BCE), Chalcolithic (~ 3000-2200 BCE) and Early Bronze Age (~ 2200-1500 BCE). We report ancient mitochondrial DNA results of 213 individuals (151 HVS-I sequences) from the northeast, central, southeast and southwest regions and thus on the largest archaeogenetic dataset from the Peninsula to date. Similar to other parts of Europe, we observe a discontinuity between hunter-gatherers and the first farmers of the Neolithic. During the subsequent periods, we detect regional continuity of Early Neolithic lineages across Iberia, however the genetic contribution of hunter-gatherers is generally higher than in other parts of Europe and varies regionally. In contrast to ancient DNA findings from Central Europe, we do not observe a major turnover in the mtDNA record of the Iberian Late Chalcolithic and Early Bronze Age, suggesting that the population history of the Iberian Peninsula is distinct in character.

Crustal structure of an intraplate thrust belt: The Iberian Chain revealed by wide-angle seismic, magnetotelluric soundings and gravity data

NASA Astrophysics Data System (ADS)

Seillé, Hoël; Salas, Ramon; Pous, Jaume; Guimerà, Joan; Gallart, Josep; Torne, Montserrat; Romero-Ruiz, Ivan; Diaz, Jordi; Ruiz, Mario; Carbonell, Ramon; Mas, Ramón

2015-11-01

The Iberian Chain is a Cenozoic intraplate thrust belt located within the Iberian plate. Unlike other belts in the Iberia Peninsula, the scarcity of geophysical studies in this area results in a number of unknowns about its crustal structure. The Iberian Chain crust was investigated by means of a NE-SW refraction/wide-angle reflection seismic transect and two magnetotelluric profiles across the chain, oriented along the same direction. The seismic profile was designed to sample the crust by means of three shots designed to obtain a reversed profile. The resulting velocity-depth model shows a moderate thickening of the crust toward the central part of the profile, where crustal thickness reaches values above 40 km, thinning toward de SW Tajo and NE Ebro foreland basins. The crustal thickening is concentrated in the upper crust. The seismic results are in overall agreement with regional trends of Bouguer gravity anomaly and the main features of the seismic model were reproduced by gravity modeling. The magnetotelluric data consist of 39 sites grouped into two profiles, with periods ranging from 0.01 s to 1000 s. Dimensionality analyses show significant 3D effects in the resistivity structure and therefore we carried out a joint 3D inversion of the full impedance tensor and magnetic transfer functions. The Mesozoic and Cenozoic basins along the Chain are well characterized by shallow high conductive zones and low velocities. Elongated conductors reaching mid-crustal depths evidence the presence of major faults dominating the crustal structure. The results from the interpretation of these complementary geophysical data sets provided the first images of the crustal structure of the Iberian Chain. They are consistent with a Cenozoic shortening responsible of the upper crust thickening as well as of the uplift of the Iberian Chain and the generation of its present day topography.

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula.

PubMed

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H

2018-06-05

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra.

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula

PubMed Central

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H.

2018-01-01

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra. PMID:29870034

Effects of teleconnection patterns on the atmospheric routes, precipitation and deposition amounts in the north-eastern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Izquierdo, Rebeca; Alarcón, Marta; Aguillaume, Laura; Àvila, Anna

2014-06-01

The North Atlantic Oscillation (NAO) has been identified as one of the atmospheric patterns which mostly influence the temporal evolution of precipitation and temperature in the Mediterranean area. Recently, the Western Mediterranean Oscillation (WeMO) has also been proposed to describe the precipitation variability in the eastern Iberian Peninsula. This paper examines whether the chemical signature and/or the chemical deposition amounts recorded over NE Iberian Peninsula are influenced by these climatic variability patterns. Results show a more relevant role of the WeMO compared to NAO in the deposition of either marine (Cl-, Na+, Mg2+) or anthropogenic pollutants (H+, NH4+, NO3- and SO42-). A cluster classification of provenances indicated that in winter (December to March) fast Atlantic air flows correspond to positive WeMO indices, while negative WeMOi are associated to Northeastern and Southwestern circulations. The negative phase of WeMO causes the entry of air masses from the Mediterranean into the Iberian Peninsula, that are enriched with marine ions and ions of anthropogenic origin (NH4+, NO3- and SO42-). For these later, this suggests the advection over the Mediterranean of polluted air masses from southern Europe and the scavenging and deposition of this pollution by precipitation during the WeMO negative phases. This will carry transboundary pollutants to the NE Iberian Peninsula. However, local pollutants may also contribute, as precipitation events from the Mediterranean and the Atlantic (associated to both WeMO phases) may incorporate emissions that accumulate locally during the winter anticyclonic episodes typical of the region.

Outbreak of ringworm in a traditional Iberian pig farm in Spain.

PubMed

García-Sánchez, Alfredo; Bazán, Javier; de Mendoza, Javier Hermoso; Martínez, Remigio; Sánchez, Sergio; de Mendoza, Miguel Hermoso

2011-03-01

An outbreak of dermatophytosis caused by Microsporum nanum in a traditional Iberian extensive farm is described. The morbidity was 100% among lactating sows; however, suckling and weaning pigs, as well as boars never developed the lesions seen in the sows. The clinical aspects of porcine ringworm caused by this fungus are discussed and the ecology of the organism is reviewed. © 2009 Blackwell Verlag GmbH.

Iberian Spanish Function Catalog. Method for Determining Language Objectives and Criteria, Volume VI.

ERIC Educational Resources Information Center

Setzler, Hubert H., Jr.; And Others

This Iberian Spanish Function Catalog presents sentences, phrases, and patterns organized by language functions and functional categories. This catalog is part of the communication/language objectives-based system (C/LOBS), which supports the front-end analysis efforts of the Defense Language Institute Foreign Language Center. The C/LOBS project,…

A review of the arcuate structures in the Iberian Variscides; constraints and genetic models

NASA Astrophysics Data System (ADS)

Dias, R.; Ribeiro, A.; Romão, J.; Coke, C.; Moreira, N.

2016-06-01

The main Ibero-Armorican Arc (IAA) is essentially defined by a predominant NW-SE trend in the Iberian branch and an E-W trend in the Brittany one. However, in northern Spain it presents a 180° rotation, sometimes known as the Cantabrian Arc (CA). The relation between both arcs is controversial, being considered either as a single arc due to one tectonic event, or as the result of a polyphasic process. According to the last assumption, there is a later arcuate structure (CA), overlapping a previous major one (IAA). Whatever the models, they must be able to explain the presence of a Variscan sinistral transpression in Iberia and a dextral one in Armorica, and a deformation spanning from the Devonian to the Upper Carboniferous. Another arcuate structure, in continuity with the CA, the Central-Iberian Arc (CIA) was recently proposed mainly based upon on magnetic anomalies, geometry of major folds and Ordovician paleocurrents. The critical review of the structural, stratigraphic and geophysical data supports both the IAA and the CA, but as independent structures. However, the presence of a CIA is highly questionable and could not be supported. The complex strain pattern of the IAA and the CA could be explained by a Devonian - Carboniferous polyphasic indentation of a Gondwana promontory. In this model the CA is essentially a thin-skinned arc, while the IAA has a more complex and longer evolution that has led to a thick-skinned first order structure. Nevertheless, both arcs are essentially the result of a lithospheric bending process during the Iberian Variscides.

Analysis of the relationship between the monthly temperatures and weather types in Iberian Peninsula

NASA Astrophysics Data System (ADS)

Peña Angulo, Dhais; Trigo, Ricardo; Nicola, Cortesi; José Carlos, González-Hidalgo

2016-04-01

In this study, the relationship between the atmospheric circulation and weather types and the monthly average maximum and minimum temperatures in the Iberian Peninsula is modeled (period 1950-2010). The temperature data used were obtained from a high spatial resolution (10km x 10km) dataset (MOTEDAS dataset, Gonzalez-Hidalgo et al., 2015a). In addition, a dataset of Portuguese temperatures was used (obtained from the Portuguese Institute of Sea and Atmosphere). The weather type classification used was the one developed by Jenkinson and Collison, which was adapted for the Iberian Peninsula by Trigo and DaCamara (2000), using Sea Level Pressure data from NCAR/NCEP Reanalysis dataset (period 1951-2010). The analysis of the behaviour of monthly temperatures based on the weather types was carried out using a stepwise regression procedure of type forward to estimate temperatures in each cell of the considered grid, for each month, and for both maximum and minimum monthly average temperatures. The model selects the weather types that best estimate the temperatures. From the validation model it was obtained the error distribution in the time (months) and space (Iberian Peninsula). The results show that best estimations are obtained for minimum temperatures, during the winter months and in coastal areas. González-Hidalgo J.C., Peña-Angulo D., Brunetti M., Cortesi, C. (2015a): MOTEDAS: a new monthly temperature database for mainland Spain and the trend in temperature (1951-2010). International Journal of Climatology 31, 715-731. DOI: 10.1002/joc.4298

Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces.

PubMed

Amills, M; Capote, J; Tosser-Klopp, G

2017-12-01

Domestic goats (Capra hircus) are spread across the five continents with a census of 1 billion individuals. The worldwide population of goats descends from a limited number of bezoars (Capra aegagrus) domesticated 10 000 YBP (years before the present) in the Fertile Crescent. The extraordinary adaptability and hardiness of goats favoured their rapid spread over the Old World, reaching the Iberian Peninsula and Southern Africa 7000 YBP and 2000 YBP respectively. Molecular studies have revealed one major mitochondrial haplogroup A and five less frequent haplogroups B, C, D, F and G. Moreover, the analysis of autosomal and Y-chromosome markers has evidenced an appreciable geographic differentiation. The implementation of new molecular technologies, such as whole-genome sequencing and genome-wide genotyping, allows for the exploration of caprine diversity at an unprecedented scale, thus providing new insights into the evolutionary history of goats. In spite of a number of pitfalls, the characterization of the functional elements of the goat genome is expected to play a key role in understanding the genetic determination of economically relevant traits. Genomic selection and genome editing also hold great potential, particularly for improving traits that cannot be modified easily by traditional selection. © 2017 Stichting International Foundation for Animal Genetics.

Evolutionary history and molecular epidemiology of rabbit haemorrhagic disease virus in the Iberian Peninsula and Western Europe

PubMed Central

2010-01-01

Background Rabbit haemorrhagic disease virus (RHDV) is a highly virulent calicivirus, first described in domestic rabbits in China in 1984. RHDV appears to be a mutant form of a benign virus that existed in Europe long before the first outbreak. In the Iberian Peninsula, the first epidemic in 1988 severely reduced the populations of autochthonous European wild rabbit. To examine the evolutionary history of RHDV in the Iberian Peninsula, we collected virus samples from wild rabbits and sequenced a fragment of the capsid protein gene VP60. These data together with available sequences from other Western European countries, were analyzed following Bayesian Markov chain Monte Carlo methods to infer their phylogenetic relationships, evolutionary rates and demographic history. Results Evolutionary relationships of RHDV revealed three main lineages with significant phylogeographic structure. All lineages seem to have emerged at a common period of time, between ~1875 and ~1976. The Iberian Peninsula showed evidences of genetic isolation, probably due to geographic barriers to gene flow, and was also the region with the youngest MRCA. Overall, demographic analyses showed an initial increase and stabilization of the relative genetic diversity of RHDV, and a subsequent reduction in genetic diversity after the first epidemic breakout in 1984, which is compatible with a decline in effective population size. Conclusions Results were consistent with the hypothesis that the current Iberian RHDV arose from a single infection between 1869 and 1955 (95% HPD), and rendered a temporal pattern of appearance and extinction of lineages. We propose that the rising positive selection pressure observed throughout the history of RHDV is likely mediated by the host immune system as a consequence of the genetic changes that rendered the virus virulent. Consequently, this relationship is suggested to condition RHDV demographic history. PMID:21067589

First cases of European bat lyssavirus type 1 in Iberian serotine bats: Implications for the molecular epidemiology of bat rabies in Europe.

PubMed

Mingo-Casas, Patricia; Sandonís, Virginia; Obón, Elena; Berciano, José M; Vázquez-Morón, Sonia; Juste, Javier; Echevarría, Juan E

2018-04-01

Previous studies have shown that EBLV-1 strains exclusively hosted by Eptesicus isabellinus bats in the Iberian Peninsula cluster in a specific monophyletic group that is related to the EBLV-1b lineage found in the rest of Europe. More recently, enhanced passive surveillance has allowed the detection of the first EBLV-1 strains associated to Eptesicus serotinus south of the Pyrenees. The aim of this study is the reconstruction of the EBLV-1 phylogeny and phylodynamics in the Iberian Peninsula in the context of the European continent. We have sequenced 23 EBLV-1 strains detected on nine E. serotinus and 14 E. isabellinus. Phylogenetic analyses were performed on the first 400-bp-5' fragment of the Nucleoprotein (N) gene together with other 162 sequences from Europe. Besides, fragments of the variable region of the phosphoprotein (P) gene and the glycoprotein-polymerase (G-L) intergenic region were studied on Spanish samples. Phylogenies show that two of the new EBLV-1a strains from Iberian E. serotinus clustered together with French strains from the North of the Pyrenees, suggesting a recent expansion southwards of this subtype. The remaining seven Iberian strains from E. serotinus grouped, instead, within the cluster linked, so far, to E. isabellinus, indicating that spatial distribution prevails over species specificity in explaining rabies distribution and supporting interspecific transmission. The structure found within the Iberian Peninsula for EBLV-1b is in concordance with that described previously for E. isabellinus. Finally, we have found that the current EBLV-1 European strains could have emerged only 175 years ago according to our evolutionary dynamics analyses.

High-Resolution Analysis of Human Y-Chromosome Variation Shows a Sharp Discontinuity and Limited Gene Flow between Northwestern Africa and the Iberian Peninsula

PubMed Central

Bosch, Elena; Calafell, Francesc; Comas, David; Oefner, Peter J.; Underhill, Peter A.; Bertranpetit, Jaume

2001-01-01

In the present study we have analyzed 44 Y-chromosome biallelic polymorphisms in population samples from northwestern (NW) Africa and the Iberian Peninsula, which allowed us to place each chromosome unequivocally in a phylogenetic tree based on >150 polymorphisms. The most striking results are that contemporary NW African and Iberian populations were found to have originated from distinctly different patrilineages and that the Strait of Gibraltar seems to have acted as a strong (although not complete) barrier to gene flow. In NW African populations, an Upper Paleolithic colonization that probably had its origin in eastern Africa contributed 75% of the current gene pool. In comparison, ∼78% of contemporary Iberian Y chromosomes originated in an Upper Paleolithic expansion from western Asia, along the northern rim of the Mediterranean basin. Smaller contributions to these gene pools (constituting 13% of Y chromosomes in NW Africa and 10% of Y chromosomes in Iberia) came from the Middle East during the Neolithic and, during subsequent gene flow, from Sub-Saharan to NW Africa. Finally, bidirectional gene flow across the Strait of Gibraltar has been detected: the genetic contribution of European Y chromosomes to the NW African gene pool is estimated at 4%, and NW African populations may have contributed 7% of Iberian Y chromosomes. The Islamic rule of Spain, which began in a.d. 711 and lasted almost 8 centuries, left only a minor contribution to the current Iberian Y-chromosome pool. The high-resolution analysis of the Y chromosome allows us to separate successive migratory components and to precisely quantify each historical layer. PMID:11254456

Invasion genetics of the Bermuda buttercup (Oxalis pes-caprae): complex intercontinental patterns of genetic diversity, polyploidy and heterostyly characterize both native and introduced populations.

PubMed

Ferrero, Victoria; Barrett, Spencer C H; Castro, Sílvia; Caldeirinha, Patrícia; Navarro, Luis; Loureiro, João; Rodríguez-Echeverría, Susana

2015-05-01

Genetic diversity in populations of invasive species is influenced by a variety of factors including reproductive systems, ploidy level, stochastic forces associated with colonization and multiple introductions followed by admixture. Here, we compare genetic variation in native and introduced populations of the clonal plant Oxalis pes-caprae to investigate the influence of reproductive mode and ploidy on levels of diversity. This species is a tristylous geophyte native to South Africa. Invasive populations throughout much of the introduced range are composed of a sterile clonal pentaploid short-styled form. We examined morph ratios, ploidy level, reproductive mode and genetic diversity at nuclear microsatellite loci in 10 and 12 populations from South Africa and the Western Mediterranean region, respectively. Flow cytometry confirmed earlier reports of diploids and tetraploids in the native range, with a single population containing pentaploid individuals. Introduced populations were composed mainly of pentaploids, but sexual tetraploids were also found. There was clear genetic differentiation between ploidy levels, but sexual populations from both regions were not significantly different in levels of diversity. Invasive populations of the pentaploid exhibited dramatically reduced levels of diversity but were not genetically uniform. The occurrence of mixed ploidy levels and stylar polymorphism in the introduced range is consistent with multiple introductions to the Western Mediterranean. This inference was supported by variation patterns at microsatellite loci. Our study indicates that some invasive populations of Oxalis pes-caprae are not entirely clonal, as often assumed, and multiple introductions and recombination have the potential to increase genetic variation in the introduced range. © 2014 John Wiley & Sons Ltd.

Composition and microstructure of Roman metallic artefacts of Southwestern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Valério, P.; Voráčová, E.; Silva, R. J. C.; Araújo, M. F.; Soares, A. M. M.; Arruda, A. M.; Pereira, C.

2015-10-01

The Roman invasion introduces new alloys and metallurgical practices in Iberian Peninsula. The southwestern end of this region has many evidences of connections with the Roman World, but there are no studies about the manufacture and use of copper-based artefacts during this period. Therefore, a set of about 20 ornaments, tools and small attachments recovered at the Roman sites of Monte Molião and Cidade das Rosas was studied by an analytical approach combining micro-EDXRF, optical microscopy, SEM-EDS and Vickers microhardness testing. The artefact composition shows a good correlation with function, namely pure copper for nails and rivets, low-tin bronze (2-6 wt% Sn) for basic tools, high-tin bronze (14 wt% Sn) for fibulae and high-lead bronze (19 wt% Pb) for a decorated jug handle. The manufacture also depends on function because most artefacts were subjected to thermomechanical processing, except the ornaments that would not benefit from post-casting work. Brass and gunmetal were only present in the site with a later chronology. A metallurgy visibly ruled by economical, aesthetical and technological concerns reinforces the evidences about the total integration of Southwestern Iberian Peninsula in the Roman World, but further studies will be essential to determine the evolution of copper-based alloys in Lusitania under Roman influence.

Downscaling of global climate change estimates to regional scales: An application to Iberian rainfall in wintertime

DOE Office of Scientific and Technical Information (OSTI.GOV)

von Storch, H.; Zorita, E.; Cubasch, U.

A statistical strategy to deduct regional-scale features from climate general circulation model (GCM) simulations has been designed and tested. The main idea is to interrelate the characteristic patterns of observed simultaneous variations of regional climate parameters and of large-scale atmospheric flow using the canonical correlation technique. The large-scale North Atlantic sea level pressure (SLP) is related to the regional, variable, winter (DJF) mean Iberian Peninsula rainfall. The skill of the resulting statistical model is shown by reproducing, to a good approximation, the winter mean Iberian rainfall from 1900 to present from the observed North Atlantic mean SLP distributions. It ismore » shown that this observed relationship between these two variables is not well reproduced in the output of a general circulation model (GCM). The implications for Iberian rainfall changes as the response to increasing atmospheric greenhouse-gas concentrations simulated by two GCM experiments are examined with the proposed statistical model. In an instantaneous [open quotes]2 CO[sub 2][close quotes] doubling experiment, using the simulated change of the mean North Atlantic SLP field to predict Iberian rainfall yields, there is an insignificant increase of area-averaged rainfall of I mm/month, with maximum values of 4 mm/month in the northwest of the peninsula. In contrast, for the four GCM grid points representing the lberian Peninsula, the change is - 10 mm/month, with a minimum of - 19 mm/month in the southwest. In the second experiment, with the IPCC scenario A ([open quotes]business as usual[close quotes]) increase of CO[sub 2], the statistical-model results partially differ from the directly simulated rainfall changes: in the experimental range of 100 years, the area-averaged rainfall decreases by 7 mm/month (statistical model), and by 9 mm/month (GCM); at the same time the amplitude of the interdecadal variability is quite different. 17 refs., 10 figs.« less

A comparison of daily evaporation downscaled using WRFDA model and GLEAM dataset over the Iberian Peninsula.

NASA Astrophysics Data System (ADS)

José González-Rojí, Santos; Sáenz, Jon; Ibarra-Berastegi, Gabriel

2017-04-01

GLEAM dataset was presented a few years ago and since that moment, it has just been used for validation of evaporation in a few places of the world (Australia and Africa). The Iberian Peninsula is composed of different soil types and it is affected by different weather regimes, with different climate regions. It is this feature which makes it a very interesting zone for the study of the meteorological cycle, including evaporation. For that purpose, a numerical downscaling exercise over the Iberian Peninsula was run nesting the WRF model inside ERA Interim. Two model configurations were tested in two experiments spanning the period 2010-2014 after a one-year spin-up (2009). In the first experiment (N), boundary conditions drive the model. The second experiment (D) is configured the same way as the N case, but 3DVAR data assimilation is run every six hours (00Z, 06Z, 12Z and 18Z) using observations obtained from the PREPBUFR dataset. For both N and D runs and ERA Interim, the evaporation of the model runs was compared to GLEAM v3.0b and v3.0c datasets over the Iberian Peninsula, both at the daily and monthly time scales. GLEAM v3.0a was not used for validation as it uses for forcing radiation and air temperature data from ERA Interim. Results show that the experiment with data assimilation (D) improve the results obtained for N experiment. Moreover, correlations values are comparable to the ones obtained with ERA Interim. However, some negative correlation values are observed at Portuguese and Mediterranean coasts for both WRF runs. All of these problematic points are considered as urban sites by the NOAH land surface model. Because of that, the model is not able to simulate a correct evaporation value. Even with these discrepancies, better results than for ERA Interim are observed for seasonal Biases and daily RMSEs over Iberian Peninsula, obtaining the best values inland. Minimal differences are observed for the two GLEAM datasets selected.

Spectral response characterization of CdTe sensors of different pixel size with the IBEX ASIC

NASA Astrophysics Data System (ADS)

Zambon, P.; Radicci, V.; Trueb, P.; Disch, C.; Rissi, M.; Sakhelashvili, T.; Schneebeli, M.; Broennimann, C.

2018-06-01

We characterized the spectral response of CdTe sensors with different pixel sizes - namely 75, 150 and 300 μm - bonded to the latest generation IBEX single photon counting ASIC developed at DECTRIS, to detect monochromatic X-ray energy in the range 10-60 keV. We present a comparison of pulse height spectra recorded for several energies, showing the dependence on the pixel size of the non-trivial atomic fluorescence and charge sharing effects that affect the detector response. The extracted energy resolution, in terms of full width at half maximum or FWHM, ranges from 1.5 to 4 keV according to the pixel size and chip configuration. We devoted a careful analysis to the Quantum Efficiency and to the Spectral Efficiency - a newly-introduced measure that quantifies the impact of fluorescence and escape phenomena on the spectrum integrity in high- Z material based detectors. We then investigated the influence of the photon flux on the aforementioned quantities up to 180 ṡ 106 cts/s/mm2 and 50 ṡ 106 cts/s/mm2 for the 150 μm and 300 μm pixel case, respectively. Finally, we complemented the experimental data with analytical and with Monte Carlo simulations - taking into account the stochastic nature of atomic fluorescence - with an excellent agreement.

Persistent genetic signatures of colonization in Brachionus manjavacas rotifers in the Iberian Peninsula.

PubMed

Gómez, Africa; Montero-Pau, Javier; Lunt, David H; Serra, Manuel; Campillo, Sergi

2007-08-01

Recent phylogeographical assessments have consistently shown that continental zooplankton display high levels of population subdivision, despite the high dispersal capacity of their diapausing propagules. As such, there is an apparent paradox between observed cosmopolitanism in the zooplankton that is associated with long-distance dispersal, and strong phylogeographical structures at a regional scale. Such population dynamics, far from migration-drift equilibrium, have been shown in the rotifer species complex Brachionus plicatilis, a group of over a dozen species inhabiting salt lakes and coastal lagoons worldwide. Here we present the mitochondrial DNA phylogeography of one of these species, Brachionus manjavacas, in the Iberian Peninsula, where it often co-occurs with the morphologically similar species B. plicatilis sensu stricto. We obtained sequences from 233 individuals from diapausing eggs and clonal cultures from 16 lakes in the Iberian Peninsula, and a Tunisian lake. Two strongly supported deep mitochondrial DNA clades were found (A and B). Phylogenetic and nested clade analysis showed that clade A has a strong phylogeographical structure, with a strong similarity of phylogeographical patterns between B. manjavacas clade A and B. plicatilis s.s. These include (i) signatures of allopatric fragmentation between central and southern populations, and (ii) range expansions in the Iberian Peninsula, both likely to have occurred during the Pleistocene. We find evidence for a glacial refugium in the Guadiana basin. Clades A and B co-occurred in several of these lakes because of range expansion and secondary contact between both clades. The co-occurrence between B. plicatilis s.s. and B. manjavacas is not recent, and both species might have experienced similar environmental challenges during the Pleistocene. The strong correlation of genetic and geographical distance found suggests that historical events can lead to such correlation, mirroring the effects of

Biogeography of Iberian freshwater fishes revisited: The roles of historical versus contemporary constraints

USGS Publications Warehouse

Filipe, Ana F.; Araújo, Miguel B.; Doadrio, Ignacio; Angermeier, Paul L.; Collares-Pereira, Maria J.

2009-01-01

Main conclusions The results support the hypothesis that historical factors exert greater constraints on native freshwater fish assemblages in the Iberian Peninsula than do current environmental factors. After examining patterns of assemblage variation across space, as evidenced by the biogeographical provinces, we discuss the likely dispersal and speciation events that underlie these patterns. 

Influence of finite-time Lyapunov exponents on winter precipitation over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Garaboa-Paz, Daniel; Lorenzo, Nieves; Pérez-Muñuzuri, Vicente

2017-05-01

Seasonal forecasts have improved during the last decades, mostly due to an increase in understanding of the coupled ocean-atmosphere dynamics, and the development of models able to predict the atmosphere variability. Correlations between different teleconnection patterns and severe weather in different parts of the world are constantly evolving and changing. This paper evaluates the connection between winter precipitation over the Iberian Peninsula and the large-scale tropospheric mixing over the eastern Atlantic Ocean. Finite-time Lyapunov exponents (FTLEs) have been calculated from 1979 to 2008 to evaluate this mixing. Our study suggests that significant negative correlations exist between summer FTLE anomalies and winter precipitation over Portugal and Spain. To understand the mechanisms behind this correlation, summer anomalies of the FTLE have also been correlated with other climatic variables such as the sea surface temperature (SST), the sea level pressure (SLP) or the geopotential. The East Atlantic (EA) teleconnection index correlates with the summer FTLE anomalies, confirming their role as a seasonal predictor for winter precipitation over the Iberian Peninsula.

Efficiency of mitochondrial DNA restriction analysis and RAPD-PCR to characterize yeasts growing on dry-cured Iberian ham at the different geographic areas of ripening.

PubMed

Andrade, María J; Rodríguez, Mar; Casado, Eva; Córdoba, Juan J

2010-03-01

The efficiency of mitochondrial DNA (mtDNA) restriction analysis and random amplification of polymorphic DNA (RAPD)-PCR to characterize yeasts growing on dry-cured Iberian ham was evaluated. Besides, the distribution of the main species and biotypes of yeasts in the different ripening areas of this product was investigated. MtDNA restriction analysis allowed yeast characterization at species and strain level. RAPD-PCR with the primers (GACA)(4) and (GAC)(5) was inappropriate for characterization at species level. Most of the mtDNA restriction patterns detected in dry-cured Iberian ham were consistent with Debaryomyces hansenii. Several yeasts biotypes were associated to specific geographic areas of dry-cured Iberian ham ripening. Copyright 2009 Elsevier Ltd. All rights reserved.

High resolution projections for the western Iberian coastal low level jet in a changing climate

NASA Astrophysics Data System (ADS)

Soares, Pedro M. M.; Lima, Daniela C. A.; Cardoso, Rita M.; Semedo, Alvaro

2017-09-01

The Iberian coastal low-level jet (CLLJ) is one of the less studied boundary layer wind jet features in the Eastern Boundary Currents Systems (EBCS). These regions are amongst the most productive ocean ecosystems, where the atmosphere-land-ocean feedbacks, which include marine boundary layer clouds, coastal jets, upwelling and inland soil temperature and moisture, play an important role in defining the regional climate along the sub-tropical mid-latitude western coastal areas. Recently, the present climate western Iberian CLLJ properties were extensively described using a high resolution regional climate hindcast simulation. A summer maximum frequency of occurrence above 30 % was found, with mean maximum wind speeds around 15 ms-1, between 300 and 400 m heights (at the jet core). Since the 1990s the climate change impact on the EBCS is being studied, nevertheless some lack of consensus still persists regarding the evolution of upwelling and other components of the climate system in these areas. However, recently some authors have shown that changes are to be expected concerning the timing, intensity and spatial homogeneity of coastal upwelling, in response to future warming, especially at higher latitudes, namely in Iberia and Canaries. In this study, the first climate change assessment study regarding the Western Iberian CLLJ, using a high resolution (9 km) regional climate simulation, is presented. The properties of this CLLJ are studied and compared using two 30 years simulations: one historical simulation for the 1971-2000 period, and another simulation for future climate, in agreement with the RCP8.5 scenario, for the 2071-2100 period. Robust and consistent changes are found: (1) the hourly frequency of occurrence of the CLLJ is expected to increase in summer along the western Iberian coast, from mean maximum values of around 35 % to approximately 50 %; (2) the relative increase of the CLLJ frequency of occurrence is higher in the north off western Iberia; (3

Gram-positive, catalase-positive cocci from dry cured Iberian ham and their enterotoxigenic potential.

PubMed Central

Rodríguez, M; Núñez, F; Córdoba, J J; Bermúdez, E; Asensio, M A

1996-01-01

Iberian ham is an uncooked, cured meat product ripened under natural uncontrolled conditions for 18 to 24 months. Gram-positive, catalase-positive cocci are the main microbial population in Iberian ham for most of the ripening time. Since some of these organisms are able to produce enterotoxins, adequate characterization and toxicological study are needed. For this, 1,327 gram-positive, catalase-positive cocci, isolated from Iberian hams at different stages and locations, were characterized by physiological and biochemical tests. Selected isolates were further characterized by guanine-cytosine (G+C) content and restriction enzyme analysis of genes coding for 16S rRNA. The toxigenic potential of these organisms was tested with specific DNA gene probes for staphylococcal enterotoxins A, B, C, and D and confirmed by semiquantitative sandwich enzyme immunoassay. The majority of the isolates were identified as Staphylococcus spp. and Micrococcus spp. Non-identified gram-positive, catalase-positive cocci which were moderately halophilic and showed a 42 to 52% G+C content were detected. A great variety of staphylococcal strains were found within the different species at any sampling time. Two strains of Staphylococcus xylosus, one Staphylococcus cohnii strain, and four of the non-identified organisms with 42 to 52% G+C contents hybridized with some of the DNA probes for C and D staphylococcal enterotoxin genes. S. xylosus hybridizing with C-enterotoxin probe reacted with both C and D enterotoxins in the immunological test. In addition, enterotoxin D was confirmed in the nonidentified strains. Some toxigenic organisms were isolated from the final product, posing a health hazard for the consumer. PMID:8787389

Charting the Interstellar Magnetic Field causing the Interstellar Boundary Explorer (IBEX) Ribbon of Energetic Neutral Atoms

NASA Astrophysics Data System (ADS)

Frisch, P. C.; Berdyugin, A.; Piirola, V.; Magalhaes, A. M.; Seriacopi, D. B.; Wiktorowicz, S. J.; Andersson, B.-G.; Funsten, H. O.; McComas, D. J.; Schwadron, N. A.; Slavin, J. D.; Hanson, A. J.; Fu, C.-W.

2015-12-01

The interstellar magnetic field (ISMF) near the heliosphere is a fundamental component of the solar galactic environment that can only be studied using polarized starlight. The results of an ongoing survey of the linear polarizations of local stars are analyzed with the goal of linking the ISMF that shapes the heliosphere to the nearby field in interstellar space. We present new results on the direction of the magnetic field within 40 pc obtained from analyzing polarization data using a merit function that determines the field direction that provides the best fit to the polarization data. Multiple magnetic components are identified, including a dominant interstellar field, {B}{POL}, that is aligned with the direction ℓ, b = 36.°2, 49.°0 (±16.°0). Stars tracing {B}{POL} have the same mean distance as stars that do not trace {B}{POL}, but show weaker average polarizations consistent with a smaller column density of polarizing material. {B}{POL} is aligned with the ISMF traced by the IBEX Ribbon to within {7.6}-7.6+14.9 degrees. The variations in the polarization position angle directions derived from the data that best match {B}{POL} indicate a low level of magnetic turbulence, ˜9° ± 1°. The direction of {B}{POL} is obtained after excluding polarization data tracing a separate magnetic structure that appears to be associated with interstellar dust deflected around the heliosphere. The velocities of local interstellar clouds relative to the Local Standard of Rest (LSR) increase with the angles between the LSR velocities and {B}{POL}, indicating that the kinematics of local interstellar material is ordered by the ISMF. The Loop I superbubble that extends close to the Sun contains dust that reddens starlight and whose distance is determined by the color excess E(B - V) of starlight. Polarizations caused by grains aligned with respect to {B}{POL} are consistent with the location of the Sun in the rim of the Loop I superbubble. An angle of {76

To Eat or Not To Eat? The Diet of the Endangered Iberian Wolf (Canis lupus signatus) in a Human-Dominated Landscape in Central Portugal

PubMed Central

Torres, Rita Tinoco; Silva, Nicole; Brotas, Gonçalo; Fonseca, Carlos

2015-01-01

Livestock predation by large carnivores and their persecution by local communities are major conservation concerns. In order to prevent speculations and reduce conflicts, it is crucial to get detailed and accurate data on predators’ dietary ecology, which is particularly important in human dominated landscapes where livestock densities are high. This is the case of the endangered Iberian wolf in Portugal, an endemic subspecies of the Iberian Peninsula, which has seen its population distribution and abundance decline throughout the 20th century. Accordingly, the diet of the Iberian wolf was analyzed, using scat analysis, in a humanized landscape in central Portugal. From 2011 to 2014, a total of 295 wolf scats were collected from transects distributed throughout the study area, prospected on a monthly basis. Scat analysis indicated a high dependence of Iberian wolf on livestock. Domestic goat predominated the diet (62% of the scats), followed by cow (20%) and sheep (13%); the only wild ungulate present in the scat analysis was the wild boar (4% of the scats). Our results show that even though livestock constitute most part of wolves diet, different livestock species may represent different predation opportunities. We conclude that the high levels of livestock consumption may be a result of low diversity and density of wild ungulates that settles livestock as the only abundant prey for wolves. Our findings help on the understanding of the Iberian wolf feeding ecology and have implications for conflict management strategies. Finally, management implications are discussed and solutions are recommended. PMID:26030294

Daily gridded datasets of snow depth and snow water equivalent for the Iberian Peninsula from 1980 to 2014

NASA Astrophysics Data System (ADS)

Alonso-González, Esteban; López-Moreno, J. Ignacio; Gascoin, Simon; García-Valdecasas Ojeda, Matilde; Sanmiguel-Vallelado, Alba; Navarro-Serrano, Francisco; Revuelto, Jesús; Ceballos, Antonio; Jesús Esteban-Parra, María; Essery, Richard

2018-02-01

We present snow observations and a validated daily gridded snowpack dataset that was simulated from downscaled reanalysis of data for the Iberian Peninsula. The Iberian Peninsula has long-lasting seasonal snowpacks in its different mountain ranges, and winter snowfall occurs in most of its area. However, there are only limited direct observations of snow depth (SD) and snow water equivalent (SWE), making it difficult to analyze snow dynamics and the spatiotemporal patterns of snowfall. We used meteorological data from downscaled reanalyses as input of a physically based snow energy balance model to simulate SWE and SD over the Iberian Peninsula from 1980 to 2014. More specifically, the ERA-Interim reanalysis was downscaled to 10 km × 10 km resolution using the Weather Research and Forecasting (WRF) model. The WRF outputs were used directly, or as input to other submodels, to obtain data needed to drive the Factorial Snow Model (FSM). We used lapse rate coefficients and hygrobarometric adjustments to simulate snow series at 100 m elevations bands for each 10 km × 10 km grid cell in the Iberian Peninsula. The snow series were validated using data from MODIS satellite sensor and ground observations. The overall simulated snow series accurately reproduced the interannual variability of snowpack and the spatial variability of snow accumulation and melting, even in very complex topographic terrains. Thus, the presented dataset may be useful for many applications, including land management, hydrometeorological studies, phenology of flora and fauna, winter tourism, and risk management. The data presented here are freely available for download from Zenodo (https://doi.org/10.5281/zenodo.854618). This paper fully describes the work flow, data validation, uncertainty assessment, and possible applications and limitations of the database.

Whole-genome mapping reveals a large chromosomal inversion on Iberian Brucella suis biovar 2 strains.

PubMed

Ferreira, Ana Cristina; Dias, Ricardo; de Sá, Maria Inácia Corrêa; Tenreiro, Rogério

2016-08-30

Optical mapping is a technology able to quickly generate high resolution ordered whole-genome restriction maps of bacteria, being a proven approach to search for diversity among bacterial isolates. In this work, optical whole-genome maps were used to compare closely-related Brucella suis biovar 2 strains. This biovar is the unique isolated in domestic pigs and wild boars in Portugal and Spain and most of the strains share specific molecular characteristics establishing an Iberian clonal lineage that can be differentiated from another lineage mainly isolated in several Central European countries. We performed the BamHI whole-genome optical maps of five B. suis biovar 2 field strains, isolated from wild boars in Portugal and Spain (three from the Iberian lineage and two from the Central European one) as well as of the reference strain B. suis biovar 2 ATCC 23445 (Central European lineage, Denmark). Each strain showed a distinct, highly individual configuration of 228-231 BamHI fragments. Nevertheless, a low divergence was globally observed in chromosome II (1.6%) relatively to chromosome I (2.4%). Optical mapping also disclosed genomic events associated with B. suis strains in chromosome I, namely one indel (3.5kb) and one large inversion (944kb). By using targeted-PCR in a set of 176 B. suis strains, including all biovars and haplotypes, the indel was found to be specific of the reference strain ATCC 23445 and the large inversion was shown to be an exclusive genomic marker of the Iberian clonal lineage of biovar 2. Copyright © 2016 Elsevier B.V. All rights reserved.

Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae).

PubMed

Ribera, Ignacio; Vogler, Alfried P

2004-01-01

The Mediterranean basin is an area of high diversity and endemicity, but the age and origin of its fauna are still largely unknown. Here we use species-level phylogenies based on approximately 1300 base pairs of the genes 16S rRNA and cytochrome oxidase I to establish the relationships of 27 of the 34 endemic Iberian species of diving beetles in the family Dytiscidae, and to investigate their level of divergence. Using a molecular clock approach, 18-19 of these species were estimated to be of Pleistocene origin, with four to six of them from the Late Pleistocene ( approximately 100 000 years). A second, lower speciation frequency peak was assigned to Late Miocene or Early Pliocene. Analysis of the distributional ranges showed that endemic species placed in the tip nodes of the trees are significantly more likely to be allopatric with their sisters than endemic species at lower node levels. Allopatric sister species are also significantly younger than sympatric clades, in agreement with an allopatric mode of speciation and limited subsequent range movement. These results strongly suggest that for some taxa Iberian populations were isolated during the Pleistocene long enough to speciate, and apparently did not expand their ranges to recolonize areas north of the Pyrenees. This is in contradiction to observations from fossil beetles in areas further north, which document large range movements associated with the Pleistocene glacial cycles hypothesized to suppress population isolation and allopatric speciation.

Analysis of immune-relevant genes expressed in spleen of Capra hircus kids fed with trivalent chromium.

PubMed

Sadeghi, Mostafa; Najafpanah, Mohammad Javad

2013-12-01

Chromium is a biologically important element for humans and laboratory animals. Although the favorable effects of trivalent chromiumon immune responses of studied animals have been well documented, the precise mechanisms by which the chromium acts on immune system is relatively poor studied. In this study, real-time qPCR technique was employed to evaluate the expression profiles of four immune-related genes (B2M, MHCA, MHCB, and Rap2A) in spleens of the domestic goats, Capra hircus, feeding on four different levels of supplemental chromium (0, 0.5, 1, and 1.5 mg/day) as chromium– methionine. The results showed that 1.5 mg/day of supplemental chromium significantly increased the expression of the four studied genes (P <0.01). Since the studied genes play important roles in development, activation, and migration of lymphocytes, their increased expression seems to be an unknown mechanism by which chromium impose reinforcing effects on immune system. Therefore, supplemental chromium can be potentially used to improve immune responses especially in animals experiencing any type of stress such as invasion by a pathogen.

UV filters bioaccumulation in fish from Iberian river basins.

PubMed

Gago-Ferrero, Pablo; Díaz-Cruz, M Silvia; Barceló, Damià

2015-06-15

The occurrence of eight organic UV filters (UV-Fs) was assessed in fish from four Iberian river basins. This group of compounds is extensively used in cosmetic products and other industrial goods to avoid the damaging effects of UV radiation, and has been found to be ubiquitous contaminants in the aquatic ecosystem. In particular, fish are considered by the scientific community to be the most feasible organism for contamination monitoring in aquatic ecosystems. Despite that, studies on the bioaccumulation of UV-F are scarce. In this study fish samples from four Iberian river basins under high anthropogenic pressure were analysed by liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). Benzophenone-3 (BP3), ethylhexyl methoxycinnamate (EHMC), 4-methylbenzylidene camphor (4MBC) and octocrylene (OC) were the predominant pollutants in the fish samples, with concentrations in the range of ng/g dry weight (d.w.). The results indicated that most polluted area corresponded to Guadalquivir River basin, where maximum concentrations were found for EHMC (241.7 ng/gd.w.). Sediments from this river basin were also analysed. Lower values were observed in relation to fish for OC and EHMC, ranging from below the limits of detection to 23 ng/gd.w. Accumulation levels of UV-F in the fish were used to calculate biota-sediment accumulation factors (BSAFs). These values were always below 1, in the range of 0.04-0.3, indicating that the target UV-Fs are excreted by fish only to some extent. The fact that the highest concentrations were determined in predators suggests that biomagnification of UV-F may take place along the freshwater food web. Copyright © 2015. Published by Elsevier B.V.

Disentangling migratory routes and wintering grounds of Iberian near-threatened European Rollers Coracias garrulus.

PubMed

Rodríguez-Ruiz, Juan; de la Puente, Javier; Parejo, Deseada; Valera, Francisco; Calero-Torralbo, Miguel A; Reyes-González, José M; Zajková, Zuzana; Bermejo, Ana; Avilés, Jesús M

2014-01-01

Long-distance migrants are suffering drastic declines in the last decades. Causes beneath this problem are complex due to the wide spatial and temporal scale involved. We aim to reveal migratory routes, stopover areas, wintering grounds, and migratory strategies for the most southwestern populations of the near-threatened European Roller Coracias garrulus in order to identify conservation key areas for the non-breeding stage of this species. To this end, we used tracking data from seven satellite transmitters fitted to birds breeding in different populations throughout the Iberian Peninsula and four geolocators fitted to individuals in a southeastern Iberian population. Precise satellite data were used to describe daily activity patterns and speed in relation to the main regions crossed during the migration. Individuals from the most southwestern Iberian populations made a detour towards the Atlantic African coast whereas those from northeastern populations followed a straight north-to-south route. We identified important stopover areas in the Sahel belt, mainly in the surroundings of the Lake Chad, and wintering grounds on southwestern Africa farther west than previously reported for the species. Concerning the migratory strategy, satellite data revealed: 1) a mainly nocturnal flying activity, 2) that migration speed depended on the type of crossed habitat, with higher average speed while crossing the desert; and 3) that the migration was slower and lasted longer in autumn than in spring. The studied populations showed weak migratory connectivity, suggesting the confluence of birds from a wide range of breeding grounds in a restricted wintering area. Therefore, we suggest to target on defining precisely key areas for this species and identifying specific threats in them in order to develop an appropriate global conservation programme for the European Roller.

Identification and characterisation of regional ozone episodes in the southwest of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Domínguez-López, D.; Vaca, F.; Hernández-Ceballos, M. A.; Bolívar, J. P.

2015-02-01

Tropospheric ozone is considered one of the most significant air pollutants due to its negative effects on human health, agricultural crops, ecosystems and climate. The features of the southwest of the Iberian Peninsula (high temperatures and high solar radiation, the presence of the Guadalquivir basin and sources of precursors) favour the occurrence of episodes of high concentrations that cause exceedances of legal thresholds with relative frequency. Despite this, no study examining regional ozone episodes has been carried out in this region until now. In the present work a surface hourly ozone dataset (2003-2006) measured at 11 representative stations located in the southwest of the Iberian Peninsula (western Andalusia) was analysed in order to identify and characterise, for the first time, the regional ozone episodes that occur in this area. Using a statistical criterion, eight regional episodes were identified and analysed. The analysis of synoptic weather patterns revealed that these episodes occur in conjunction with two different synoptic conditions (high surface pressure either close to the British Isles or over the Atlantic Ocean). Both conditions generate weak isobaric surface pressure over the Iberian Peninsula, favouring the establishment of easterly winds at 500 m and the development of winds with two main prevailing directions (southwest-northwest, following the Guadalquivir basin) in the study area. During episodic days ozone follows a similar daily cycle to that observed on non-episode summer days, although the levels reached during the former are higher. In both cases, a direct relationship between the daily ozone cycle and the local wind regimen was not observed. This therefore seems to indicate that the daily cycle followed by ozone is mainly regulated by the precursor emissions produced in the environment, by the temperature changes taking place during the day and by the influence of the lower troposphere during anticyclonic weather conditions.

The Late Cretaceous Alkaline Igneous Province in the Iberian Peninsula, and its tectonic significance

NASA Astrophysics Data System (ADS)

Rock, N. M. S.

1982-04-01

The Iberian Province consists of the following: the three subvolcanic, syenitic, major intrusive complexes of Monchique, Sines and Sintra in W. and SW Portugal, together with their basanitic/lamprophyric minor intrusive suites; basanitic volcanic complexes around Lisbon; at least some of a widespread suite of basanitic to theralitic minor intrusives in west central Portugal; about 80 small basanitic/lamprophyric to nepheline syenitic intrusions scattered through the Pyrenees, NE Spain, the French Corbières, and off the coast of NW Spain; and the Ormonde Seamount of the Gorringe Bank off the SW coast of Portugal. Most of these occurrences have been dated isotopically or from field evidence as Late Cretaceous. Geological and petrological details of the various occurrences are compiled and reviewed. Primary basanitic magmas were probably parental to the entire Province, and generated syenitic magmas by differentiation processes; oversaturated rocks were produced by alkali loss and perhaps also by crustal involvement. The Iberian Province is related to the opening of the N. Atlantic, specifically that of the Bay of Biscay.

Scanning of selection signature provides a glimpse into important economic traits in goats (Capra hircus).

PubMed

Guan, Dailu; Luo, Nanjian; Tan, Xiaoshan; Zhao, Zhongquan; Huang, Yongfu; Na, Risu; Zhang, Jiahua; Zhao, Yongju

2016-10-31

Goats (Capra hircus) are one of the oldest livestock domesticated species, and have been used for their milk, meat, hair and skins over much of the world. Detection of selection footprints in genomic regions can provide potential insights for understanding the genetic mechanism of specific phenotypic traits and better guide in animal breeding. The study presented here has generated 192.747G raw data and identified more than 5.03 million single-nucleotide polymorphisms (SNPs) and 334,151 Indels (insertions and deletions). In addition, we identified 155 and 294 candidate regions harboring 86 and 97 genes based on allele frequency differences in Dazu black goats (DBG) and Inner Mongolia cashmere goats (IMCG), respectively. Populations differentiation reflected by Fst values detected 368 putative selective sweep regions including 164 genes. The top 1% regions of both low heterozygosity and high genetic differentiation contained 239 (135 genes) and 176 (106 genes) candidate regions in DBG and IMCG, respectively. These genes were related to reproductive and productive traits, such as "neurohypophyseal hormone activity" and "adipocytokine signaling pathway". These findings may be conducive to molecular breeding and the long-term preservation of the valuable genetic resources for this species.

A New Species of Haplophyllum A. Juss. (Rutaceae) from the Iberian Peninsula: Evidence from Morphological, Karyological and Molecular Analyses

PubMed Central

NAVARRO, F. B.; SUÁREZ-SANTIAGO, V. N.; BLANCA, G.

2004-01-01

• Background and Aims The discovery of a new species, Haplophyllum bastetanum F.B. Navarro, V.N. Suárez-Santiago & Blanca sp. nov., in the south-east of Spain has prompted the comparative study of species of the Iberian Peninsula, and others related, through morphological, cytogenetic, molecular, distributional and ecological characterization. • Methods The morphological study involved a quantitative analysis of the species present in the Iberian Peninsula and a comparative analysis of the morphological characteristics between H. bastetanum and other related species. Mitotic analyses were made with root meristems taken from germinating seeds. Phylogenetic analyses of the internal transcribed spacer sequences of nuclear ribosomal DNA were performed using neighbour-joining (NJ) and maximum-parsimony methods. • Key Results Haplophyllum bastetanum is a diploid species (2n = 18) distinguished primarily for its non-trifoliate glabrous leaves, lanceolate sepals, dark-green petals with a dorsal band of hairs, and a highly hairy ovary with round-apex locules. The other two Iberian species (H. linifolium and H. rosmarinifolium) are tetraploid (2n = 36) and have yellow petals. Both phylogenetic methods generated a well-supported clade grouping H. linifolium with H. rosmarinifolium. In the NJ tree, the H. linifolium–H. rosmarinifolium clade is a sister group to H. bastetanum, while in the parsimony analysis this occurred only when the gaps were coded as a fifth base and the characters were reweighted according to the rescaled consistency index. This latter group is supported by the sequence divergence among taxa. • Conclusions The phylogenies established from DNA sequences together with morphological and cytogenetic analyses support the separation of H. bastetanum as a new species. The results suggest that the change in the number of chromosomes may be the key mechanism of speciation of the genus Haplophyllum in the Iberian Peninsula. An evolutionary scheme for them

Assessing the Snow Advance Index as potential predictor of winter streamflow of the Iberian Peninsula Rivers

NASA Astrophysics Data System (ADS)

Hidalgo-Muñoz, José Manuel; García-Valdecasas-Ojeda, Matilde; Raquel Gámiz-Fortis, Sonia; Castro-Díez, Yolanda; Jesús Esteban-Parra, María

2015-04-01

This study examines the ability of the Eurasian snow cover increase during the previous October as potential predictor of winter streamflow in the Iberian Peninsula Rivers. The streamflow data base used has been provided by the Center for Studies and Experimentation of Public Works, CEDEX. Series from gauging stations and reservoirs with less than 10% of missing data (filled by regression with well correlated neighboring stations) have been considered. The homogeneity of these series has been evaluated through the Pettit test and degree of human alteration by the Common Area Index. The application of these criteria led to the selection of 382 streamflow time series homogeneously distributed over the Iberian Peninsula, covering the period 1975-2008. For this streamflow data, winter seasonal values were obtained by averaging the monthly values from January to March. The recently proposed Snow Advance Index (SAI) was employed to monitor the snow cover increase during previous October. The stability of the correlations was the criterion followed to establish if SAI could be considered as potential predictor of winter streamflow at each gauging station. Winter streamflow is predicted using a linear regression model. A leave-one-out cross validation approach was adopted to create calibration and validations subsets. The correlation coefficient (RHO), Root Mean Square Error Skill Score (RMSESS) and the Gerrity Skill Score (GSS) were used to evaluate the forecasting skill. From the 382 stations evaluated, significant and stable correlations with SAI were found in 238 stations, covering most of the IP (except for the Cantabrian and Mediterranean slopes). Some forecasting skill was found in 223 of them, being this skill moderate (RHO>0.44, RMSESS>10%, GSS>0.2) in 141 of them, and particularly good (RHO>0.5, RMSESS>20%, GSS>0.4) in 23. This study shows that the SAI of previous October is a reliable predictor of following winter streamflow for the Iberian Peninsula Rivers

Cryopreservation of Iberian pig spermatozoa. Comparison of different freezing extenders based on post-thaw sperm quality.

PubMed

De Mercado, Eduardo; Rodríguez, Ana; Gómez, Emilio; Sanz, Elena

2010-03-01

The aim of this study was to evaluate the cryoprotective effect of different freezing extenders against cryopreservation injuries on Iberian boar sperm. The sperm-rich fraction was collected and pooled from six sexually mature Iberian boars, and was frozen in different extenders containing glucose, lactose or fructose as sugar source and including Orvus ES Paste only in the freezing extender-2 (Glucose; Lactose and Fructose) or in both freezing extenders (Glucose2; Lactose2 and Fructose2). During the cryopreservation process, the supernatant was removed after the centrifugation step, then was extended with freezing extender-1 for the equilibration period and with freezing extender-2 immediately before freezing. Post-thaw sperm characteristics, such as plasma membrane integrity (SYBR-14/PI), mitochondrial function (Rhodamine 123) and acrosome integrity (NAR), were monitored. Overall sperm motility and the individual kinematic parameters of motile spermatozoa (assessed by the computer-aided sperm analysis system Sperm Class Analyzer [SCA]) were recorded in the different experimental treatments. Measurements were taken at 30 and 150 min post-thaw. The state of the acrosome after thawing did not show significant differences between the freezing extenders studied. Freezing-thawing caused a significant decrease (P<0.001) in plasma membrane integrity and in mitochondrial activity in the spermatozoa frozen with Orvus ES Paste in both freezing extenders. Furthermore, spermatozoa frozen with Orvus ES Paste in both freezing extenders exhibited lower (P<0.05) motility and kinematic parameters than those frozen in the absence of Orvus ES Paste in the first freezing extender. The spermatozoa frozen with the Lactose extender and with Orvus ES Paste only in the second freezing extender showed a better evolution of the motility and kinematic characteristics (P<0.05) over time. The deterioration in post-thaw sperm motility and kinematic parameters were concurrent with reduced sperm

First records of Cotylea (Polycladida, Platyhelminthes) for the Atlantic coast of the Iberian Peninsula

PubMed Central

Noreña, Carolina; Marquina, Daniel; Perez, Jacinto; Almon, Bruno

2014-01-01

Abstract A study of polyclad fauna of the Atlantic coast of the Iberian Peninsula was carried out from 2010 to 2013. The paper reports nine new records belonging to three Cotylean families: the family Euryleptidae Lang, 1884, Pseudocerotidae Lang, 1884 and the family Prosthiostomidae Lang, 1884, and describes one new species, Euryleptodes galikias sp. n. PMID:24843268

Solar shortwave radiation in the Iberian Peninsula along the last six decades

NASA Astrophysics Data System (ADS)

Bilbao, Julia; Román, Roberto; de Miguel, Argimiro; Pérez-Burgos, Ana

2014-05-01

The solar total shortwave radiation (SW, 305-2,800 nm) reaching the Earth surface is a key factor in the Earth energy balance and in the climate change. A decrease in SW levels has a cooling effect over the Earth. The SW changes are of interest in order to know the possible climatic effects. However long-term measured SW series are scarce, for example the oldest SW measurements in Spain are from 1973. The main objective of this work is to reconstruct and analyze nine long-term SW series from 1950 to 2011 in nine Spanish places located in the Iberian Peninsula. The data from different satellite retrievals were downloaded at the nine places: Total ozone column from different databases, spectral surface albedo and water vapour column from MODIS instrument, aerosol optical depth at 443 nm and Angström Exponent (between 443 nm and 670 nm) from MISR instrument onboard Terra satellite, and single scattering albedo from OMI instrument onboard Aura satellite. Moreover, sunshine duration records taken in the places were used. The UVSPEC/Libradtran radiative transfer model was run to obtain the daily SW irradiation under cloudless conditions in each location using as inputs monthly climatology tables calculated with the mentioned satellite retrievals. A model to obtain SW irradiation through the cloudless simulations and the sunshine records was developed, finding a great agreement with the monthly averaged SW measurements: a root mean square error of 5% and a mean bias error of 0.7%. The proposed model was used to obtain the daily SW irradiation, and the monthly, seasonal and annual averages, on the nine locations from 1950 to 2011. The homogeneity of these series was tested obtaining that all series are homogeneous. The anomalies of the series were calculated and a new series (Iberian Peninsula) of anomalies were obtained as an average of the nine locations. The annual SW on the Iberian Peninsula (the averaged series) shown a negative and statistically significant (99

The climate of the Common Era off the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Abrantes, Fátima; Rodrigues, Teresa; Rufino, Marta; Salgueiro, Emília; Oliveira, Dulce; Gomes, Sandra; Oliveira, Paulo; Costa, Ana; Mil-Homens, Mário; Drago, Teresa; Naughton, Filipa

2017-12-01

The Mediterranean region is a climate hot spot, sensitive not only to global warming but also to water availability. In this work we document major temperature and precipitation changes in the Iberian Peninsula and margin during the last 2000 years and propose an interplay of the North Atlantic internal variability with the three atmospheric circulation modes (ACMs), (North Atlantic Oscillation (NAO), east atlantic (EA) and Scandinavia (SCAND)) to explain the detected climate variability. We present reconstructions of sea surface temperature (SST derived from alkenones) and on-land precipitation (estimated from higher plant n-alkanes and pollen data) in sedimentary sequences recovered along the Iberian Margin between the south of Portugal (Algarve) and the northwest of Spain (Galiza) (36 to 42° N). A clear long-term cooling trend, from 0 CE to the beginning of the 20th century, emerges in all SST records and is considered to be a reflection of the decrease in the Northern Hemisphere summer insolation that began after the Holocene optimum. Multi-decadal/centennial SST variability follows other records from Spain, Europe and the Northern Hemisphere. Warm SSTs throughout the first 1300 years encompass the Roman period (RP), the Dark Ages (DA) and the Medieval Climate Anomaly (MCA). A cooling initiated at 1300 CE leads to 4 centuries of colder SSTs contemporary with the Little Ice Age (LIA), while a climate warming at 1800 CE marks the beginning of the modern/Industrial Era. Novel results include two distinct phases in the MCA: an early period (900-1100 years) characterized by intense precipitation/flooding and warm winters but a cooler spring-fall season attributed to the interplay of internal oceanic variability with a positive phase in the three modes of atmospheric circulation (NAO, EA and SCAND). The late MCA is marked by cooler and relatively drier winters and a warmer spring-fall season consistent with a shift to a negative mode of the SCAND. The Industrial Era

Geomorphic status of regulated rivers in the Iberian Peninsula.

PubMed

Lobera, G; Besné, P; Vericat, D; López-Tarazón, J A; Tena, A; Aristi, I; Díez, J R; Ibisate, A; Larrañaga, A; Elosegi, A; Batalla, R J

2015-03-01

River regulation by dams modifies flow regimes, interrupts the transfer of sediment through channel networks, and alters downstream bed dynamics, altogether affecting channel form and processes. So far, most studies on the geomorphic impacts of dams are restricted to single rivers, or even single river stretches. In this paper we analyse the geomorphic status of 74 river sites distributed across four large basins in the Iberian Peninsula (i.e. 47 sites located downstream of dams). For this purpose, we combine field data with hydrological data available from water agencies, and analyse historical (1970) and current aerial photographs. In particular, we have developed a Geomorphic Status (GS) index that allows us to assess the physical structure of a given channel reach and its change through time. The GS encompasses a determination of changes in sedimentary units, sediment availability, bar stability and channel flow capacity. Sites are statistically grouped in four clusters based on contrasted physical and climate characteristics. Results emphasise that regulation changes river's flow regime with a generalized reduction of the magnitude and frequency of floods (thus flow competence). This, in addition to the decrease downstream sediment supply, results in the loss of active bars as they are encroached by vegetation, to the point that only reaches with little or no regulation maintain exposed sedimentary deposits. The GS of regulated river reaches is negatively correlated with magnitude of the impoundment (regulation). Heavily impacted reaches present channel stabilization and, in contrast to the hydrological response, the distance and number of tributaries do not reverse the geomorphic impact of the dams. Stabilization limits river dynamics and may contribute to the environmental degradation of the fluvial ecosystem. Overall, results describe the degree of geomorphological alteration experienced by representative Iberian rivers mostly because of regulation

Volumetric runoff coefficients for experimental rural catchments in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Taguas, Encarnación V.; Molina, Cecilio; Nadal-Romero, Estela; Ayuso, José L.; Casalí, Javier; Cid, Patricio; Dafonte, Jorge; Duarte, Antonio C.; Farguell, Joaquim; Giménez, Rafael; Giráldez, Juan V.; Gómez, Helena; Gómez, Jose A.; González-Hidalgo, J. Carlos; Keizer, J. Jacob; Lucía, Ana; Mateos, Luciano; Rodríguez-Blanco, M. Luz; Schnabel, Sussane; Serrano-Muela, M. Pilar

2015-04-01

Analysis of runoff and peaks therein is essential for designing hydraulic infrastructures and for assessing the hydrological implications of likely scenarios of climate and/or land-use change. Different methods are available to calculate runoff coefficients. For instance, the runoff coefficient of a catchment can be described either as the ratio of total depth of runoff to total depth of rainfall or as the ratio of peak flow to rainfall intensity for the time of concentration (Dhakal et al. 2012). If the first definition is considered, runoff coefficients represent the global effect of different features and states of catchments and its determination requires a suitable analysis according to the objectives pursued (Chow et al., 1988). In this work, rainfall-runoff data and physical attributes from small rural catchments located in the Iberian Peninsula (Portugal and Spain) were examined in order to compare the representative values of runoff coefficients using three different approaches: i) statistical analysis of rainfall-runoff data and their quantiles (Dhakal et al., 2012); ii) probabilistic runoff coefficients from the rank-ordered pairs of observed rainfall-runoff data and their relationships with rainfall depths (Schaake et al., 1967); iii) finally, a multiple linear model based on geomorphological attributes. These catchments exhibit great variety with respect to their natural settings, such as climate, topography and lithology. We present a preliminary analysis of the rainfall-runoff relationships as well as their variability in a complex context such as the Iberian Peninsula where contrasted environmental systems coexist. We also discuss reference parameters representing runoff coefficients commonly included into hydrological models. This study is conceived as the first step to explore further working protocols and modeling gaps in a very susceptible area to the climate change such as the Iberian Peninsula's, where the analysis of runoff coefficients is

Large bowel fermentation of maize or sorghum-acorn diets fed as a different source of carbohydrates to Landrace and Iberian pigs.

PubMed

Morales, J; Pérez, J F; Martín-Orúe, S M; Fondevila, M; Gasa, J

2002-11-01

Twenty-four finishing pigs (twelve Iberian and twelve Landrace) were used in a growing and slaughtering experiment. Animals were fed two diets differing in their ingredients, maize (diet C) or sorghum-acorn (diet A). At an average weight of 107.0 kg pigs were slaughtered and hindgut digesta sampled to study the effect of breed and diet on large bowel fermentation. Flows of digesta to the hindgut compartment were estimated based on an indigestible flow marker (Cr2O3) and were higher in Iberian than in Landrace pigs (P<0.001), and higher in animals fed diet A than diet C (P=0.07). The higher flows in Iberian pigs were mainly associated with a higher voluntary feed intake (3.50 v. 2.70 kg/d, P<0.01) and lower ileal digestibility of NSP (-12.8 v. 47.8, P<0.01). Differences between diets were mainly associated with a lower ileal digestibility of starch from diet A (89.2 v. 96.9 %, P=0.06), although no differences in the resistant starch content were observed in vitro. Fermentation of different carbohydrates through the large bowel showed that NSP-glucose had lower digestibility in Iberian than in Landrace pigs (62.5 v. 94.2 %, P<0.001), but no differences were observed in starch, or other NSP-fibre fractions (arabinose, xylose and galactose). The type and amount of carbohydrates reaching the large bowel were related to the diet but also to breed, and promoted differences in the fermentative activity associated with different volatile fatty acid patterns and changes in microbial enzymic activity.

Subsurface geomicrobiology of the Iberian Pyritic Belt, a terrestrial analogue of Mars

NASA Astrophysics Data System (ADS)

Amils, Ricardo

Terrestrial subsurface geomicrobiology is a matter of growing interest on many levels. From a fundamental point of view, it seeks to determine whether life can be sustained in the absence of radiation. From an astrobiological point of view, it is an interesting model for early life on Earth, as well as a representation of life as it could occur in other planetary bodies, e.g., Mars. Ŕ Tinto is an unusual extreme acidic environment due to its size, constant acidic pH, high ıo concentration of heavy metals and high level of microbial diversity. Ŕ Tinto rises in the core of ıo the Iberian Pyritic Belt (IPB), one of the biggest sulfidic ore deposits in the world. Today it is clear that the extreme characteristics of Ŕ Tinto are not due to acid mine drainage resulting ıo from mining activity. To explore the hypothesis that a continuous underground reactor of chemolithotrophic microorganisms thriving in the rich sulfidic minerals of the IPB is responsible for the extreme conditions found in the river, a drilling project has been developed to detect evidence of subsurface microbial activity and potential resources to support these microbial communities in situ from retrieved cores (MARTE project). Preliminary results clearly show that there is an active subsurface geomicrobiology in the Iberian Pyritic Belt associated to places were ground waters intersects the sulfidic ore body.

Drought-induced weakening of growth-temperature associations in high-elevation Iberian pines

NASA Astrophysics Data System (ADS)

Diego Galván, J.; Büntgen, Ulf; Ginzler, Christian; Grudd, Håkan; Gutiérrez, Emilia; Labuhn, Inga; Julio Camarero, J.

2015-01-01

The growth/climate relationship of theoretically temperature-controlled high-elevation forests has been demonstrated to weaken over recent decades. This is likely due to new tree growth limiting factors, such as an increasing drought risk for ecosystem functioning and productivity across the Mediterranean Basin. In addition, declining tree growth sensitivity to spring temperature may emerge in response to increasing drought stress. Here, we evaluate these ideas by assessing the growth/climate sensitivity of 1500 tree-ring width (TRW) and 102 maximum density (MXD) measurement series from 711 and 74 Pinus uncinata trees, respectively, sampled at 28 high-elevation forest sites across the Pyrenees and two relict populations of the Iberian System. Different dendroclimatological standardization and split period approaches were used to assess the high- to low-frequency behavior of 20th century tree growth in response to temperature means, precipitation totals and drought indices. Long-term variations in TRW track summer temperatures until about 1970 but diverge afterwards, whereas MXD captures the recent temperature increase in the low-frequency domain fairly well. On the other hand summer drought has increasingly driven TRW along the 20th century. Our results suggest fading temperature sensitivity of Iberian high-elevation P. uncinata forest growth, and reveal the importance of summer drought that is becoming the emergent limiting factor of tree ring width formation in many parts of the Mediterranean Basin.

A study of surface ozone variability over the Iberian Peninsula during the last fifty years

NASA Astrophysics Data System (ADS)

Fernández-Fernández, M. I.; Gallego, M. C.; García, J. A.; Acero, F. J.

2011-02-01

There is good evidence for an increase in the global surface level of ozone in the past century. In this work we present an analysis of 18 surface ozone series over the Iberian Peninsula, considering the target values of ozone for the protection of human health and for the protection of vegetation, as well as the information and alert thresholds established by the current European Directive on ambient air quality and cleaner air for Europe (Directive 2008/50/EC). The results show that the stations located on the Cantabrian coast exceeded neither the target value for the protection of human health nor the target value for the protection of vegetation. The information threshold was exceeded in most of the stations, while the alert threshold was only exceeded in one. The seasonal and daily evolution of ozone concentrations were as expected. A trend analysis of three surface ozone concentration indices (monthly median and 98th percentile, and monthly maximum of the daily maximum 8-h mean) was performed both for the whole period of each station and for the common period from 2001 to 2007 for all the months of the year. It was noted that generally the south of the Iberian Peninsula presented increasing trends for the three indices, especially in the last six months of the year, and the north decreasing trends. Finally, a correlation analysis was performed between the daily maximum 8-h mean and both daily mean temperature and daily mean solar radiation for the whole and the common periods. For all stations, there was a significant positive association at a 5% significance level between the daily maximum 8-h mean and the two meteorological variables of up to approximately 0.5. The spatial distribution of these association values from 2001 to 2007 showed a positive northwest to southeast gradient over the Iberian Peninsula.

Phylogeographic distribution of very virulent infectious bursal disease virus isolates in the Iberian Peninsula.

PubMed

Cortey, Martí; Bertran, Kateri; Toskano, Jennifer; Majó, Natàlia; Dolz, Roser

2012-01-01

Viral population dynamics of very virulent infectious bursal disease virus (vvIBDV) field strains isolated in the Iberian Peninsula since the first outbreak in the 1990s have been analysed. Low levels of genetic variability and a global purification selection pattern were reported in 480 base pairs of the hypervariable region of the VP2 gene, indicating a lack of a selection-driven immune escape in the evolutive pathway of the virus. The viral population structure of vvIBDV strains in the Iberian Peninsula showed a strong relationship between geography and phylogeny, with two main groups observed. A global comparison among vvIBDV strains also showed an association with sequences from the same country. The low variability, the strong purifying selection and the geographical pattern observed point to a picture where the virus evolves slowly, occupying the same geographical niche for a long time. The scenario depicted fits well with the biological features of the virus: being able to remain viable for long periods of time due to a strong environmental resistance, and as an immunosuppressive agent, capable per se of annihilating temporally the immune system of the host.

A shift in the spatial pattern of Iberian droughts during the 17th century

NASA Astrophysics Data System (ADS)

Domínguez-Castro, F.; García-Herrera, R.; Ribera, P.; Barriendos, M.

2010-06-01

In this paper, series of drought occurrence and drought extension in the Iberian Peninsula are constructed for the 1600-1750 period from seven rogation series. These rogation ceremony records come from Bilbao, Catalonia, Zamora, Zaragoza, Toledo, Murcia and Seville. They are distributed across the Peninsula and include the areas with the most characteristic Iberian climate types, influenced by the Atlantic and the Mediterranean conditions, described from modern data. A seasonal division of the series shows that spring is a critical season for rogation series in most of Iberia, being Bilbao the only site were the highest number of rogations is detected for a different season. The annual analysis of the series shows a dramatic difference between the period 1600-1652, when droughts are characterized by its local character; and the period 1653-1749, when they affect to broader regions or even to the whole Peninsula. The analysis of spring series confirms the existence of the two periods detected in the annual analysis. Finally, secondary documentary sources are used to further characterise the two most extended droughts in the period, 1664 and 1680, and to verify the extension of the areas affected by droughts recorded through rogation series.

Genetic evidence for multiple events of hybridization between wolves and domestic dogs in the Iberian Peninsula.

PubMed

Godinho, Raquel; Llaneza, Luis; Blanco, Juan C; Lopes, Susana; Álvares, Francisco; García, Emilio J; Palacios, Vicente; Cortés, Yolanda; Talegón, Javier; Ferrand, Nuno

2011-12-01

Hybridization between wild species and their domestic counterparts may represent a major threat to natural populations. However, high genetic similarity between the hybridizing taxa makes the detection of hybrids a difficult task and may hinder attempts to assess the impact of hybridization in conservation biology. In this work, we used a combination of 42 autosomal microsatellites together with Y-chromosome microsatellite-defined haplotypes and mtDNA sequences to investigate the occurrence and dynamics of wolf-dog hybridization in the Iberian Peninsula. To do this, we applied a variety of Bayesian analyses and a parallel set of simulation studies to evaluate (i) the differences between Iberian wolves and dogs, (ii) the frequency and geographical distribution of hybridization and (iii) the directionality of hybridization. First, we show that Iberian wolves and dogs form two well-differentiated genetic entities, suggesting that introgressive hybridization is not a widespread phenomenon shaping both gene pools. Second, we found evidence for the existence of hybridization that is apparently restricted to more peripheral and recently expanded wolf populations. Third, we describe compelling evidence suggesting that the dynamics of hybridization in wolf populations is mediated by crosses between male dogs and female wolves. More importantly, the observation of a population showing the occurrence of a continuum of hybrid classes forming mixed packs may indicate that we have underestimated hybridization. If future studies confirm this pattern, then an intriguing avenue of research is to investigate how introgression from free-ranging domestic dogs is enabling wolf populations to adapt to the highly humanized habitats of southern Europe while still maintaining their genetic differentiation. © 2011 Blackwell Publishing Ltd.

Mid-late Holocene climatic changes in the Southwestern Iberian shelf

NASA Astrophysics Data System (ADS)

Gomes, S.; Naughton, F.; Rodrigues, T.; Drago, T.; Sanchez-Goñi, M.; Freitas, C.

2012-04-01

Vegetation (pollen analysis) and alkenone-derived Sea Surface Temperature (SST) reconstructions from a south western Iberian shelf core (POPEI VC2B) (36°53'12,99'' N, 8°03'57,98'' W) show orbital and suborbital climate variability at extremely high resolution for the last 6000 years in this region. In particular, the mid-late Holocene is marked by a long-term cooling revealed by the gradual decrease of arboreal pollen (AP) percentages and SST which parallels the general decreasing trend of the δ18-O isotope composition recorded in Greenland ice records and the decrease of the mid-latitudes summer insolation. The short-term vegetation changes, reflecting millennial scale climatic variability, are clearly identified in the POPEI VC2B over the last 6000 years. In particular, the basement of this record is marked by the presence of semi-desert plants (Chenopodiaceae, Artemisia and Ephedra) reflecting dry conditions. These particular dry conditions have been detected elsewhere in the southern Iberian Peninsula and in North African records. Following the particularly dry period, there is a decline of semi-desert plants and an increase of Ericaceae and Pinus associated with establishment of an incipient forest of Quercus deciduous type reflecting temperate and humid conditions. This period was followed by a decrease of arboreal pollen percentages, suggesting a relative climate cooling. Finally, the last 2500/2000 years, are marked by the presence of anthropogenic associations (including Cerealia-type, Plantago lanceolata-coronopus type, and Olea) and are characterized by several vegetation and climate oscillations associated with the Roman Period (RP), the Dark Ages (DA), the Medieval Climatic Anomaly (MCA), and the Little Ice Age (LIA).

Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages

PubMed Central

Li, Qian; Lin, Sen

2017-01-01

Intramuscular fat (IMF) content and fatty acid composition of longissimus dorsi muscle (LM) change with growth, which partially determines the flavor and nutritional value of goat (Capra hircus) meat. However, unlike cattle, little information is available on the transcriptome-wide changes during different postnatal stages in small ruminants, especially goats. In this study, the sequencing reads of goat LM tissues collected from kid, youth, and adult period were mapped to the goat genome. Results showed that out of total 24 689 Unigenes, 20 435 Unigenes were annotated. Based on expected number of fragments per kilobase of transcript sequence per million base pairs sequenced (FPKM), 111 annotated differentially expressed genes (DEGs) were identified among different postnatal stages, which were subsequently assigned to 16 possible expression patterns by series-cluster analysis. Functional classification by Gene Ontology (GO) analysis was used for selecting the genes showing highest expression related to lipid metabolism. Finally, we identified the node genes for lipid metabolism regulation using co-expression analysis. In conclusion, these data may uncover candidate genes having functional roles in regulation of goat muscle development and lipid metabolism during the various growth stages in goats. PMID:28800357

Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.

PubMed

Lin, Yaqiu; Zhu, Jiangjiang; Wang, Yong; Li, Qian; Lin, Sen

2017-01-01

Intramuscular fat (IMF) content and fatty acid composition of longissimus dorsi muscle (LM) change with growth, which partially determines the flavor and nutritional value of goat (Capra hircus) meat. However, unlike cattle, little information is available on the transcriptome-wide changes during different postnatal stages in small ruminants, especially goats. In this study, the sequencing reads of goat LM tissues collected from kid, youth, and adult period were mapped to the goat genome. Results showed that out of total 24 689 Unigenes, 20 435 Unigenes were annotated. Based on expected number of fragments per kilobase of transcript sequence per million base pairs sequenced (FPKM), 111 annotated differentially expressed genes (DEGs) were identified among different postnatal stages, which were subsequently assigned to 16 possible expression patterns by series-cluster analysis. Functional classification by Gene Ontology (GO) analysis was used for selecting the genes showing highest expression related to lipid metabolism. Finally, we identified the node genes for lipid metabolism regulation using co-expression analysis. In conclusion, these data may uncover candidate genes having functional roles in regulation of goat muscle development and lipid metabolism during the various growth stages in goats.

Widespread Secondary Contact and New Glacial Refugia in the Halophilic Rotifer Brachionus plicatilis in the Iberian Peninsula

PubMed Central

Campillo, Sergi; Serra, Manuel; Carmona, María José; Gómez, Africa

2011-01-01

Small aquatic organisms harbour deep phylogeographic patterns and highly structured populations even at local scales. These patterns indicate restricted gene flow, despite these organisms' high dispersal abilities, and have been explained by a combination of (1) strong founder effects due to rapidly growing populations and very large population sizes, and (2) the development of diapausing egg banks and local adaptation, resulting in low effective gene flow, what is known as the Monopolization hypothesis. In this study, we build up on our understanding of the mitochondrial phylogeography of the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula by both increasing the number of sampled ponds in areas where secondary contact is likely and doubling sample sizes. We analyzed partial mitochondrial sequences of 252 individuals. We found two deep mitochondrial DNA lineages differing in both their genetic diversity and the complexity of their phylogeographic structure. Our analyses suggest that several events of secondary contact between clades occurred after their expansion from glacial refugia. We found a pattern of isolation-by-distance, which we interpret as being the result of historical colonization events. We propose the existence of at least one glacial refugium in the SE of the Iberian Peninsula. Our findings challenge predictions of the Monopolization hypothesis, since coexistence (i.e., secondary contact) of divergent lineages in some ponds in the Iberian Peninsula is common. Our results indicate that phylogeographic structures in small organisms can be very complex and that gene flow between diverse lineages after population establishment can indeed occur. PMID:21698199

Widespread secondary contact and new glacial refugia in the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula.

PubMed

Campillo, Sergi; Serra, Manuel; Carmona, María José; Gómez, Africa

2011-01-01

Small aquatic organisms harbour deep phylogeographic patterns and highly structured populations even at local scales. These patterns indicate restricted gene flow, despite these organisms' high dispersal abilities, and have been explained by a combination of (1) strong founder effects due to rapidly growing populations and very large population sizes, and (2) the development of diapausing egg banks and local adaptation, resulting in low effective gene flow, what is known as the Monopolization hypothesis. In this study, we build up on our understanding of the mitochondrial phylogeography of the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula by both increasing the number of sampled ponds in areas where secondary contact is likely and doubling sample sizes. We analyzed partial mitochondrial sequences of 252 individuals. We found two deep mitochondrial DNA lineages differing in both their genetic diversity and the complexity of their phylogeographic structure. Our analyses suggest that several events of secondary contact between clades occurred after their expansion from glacial refugia. We found a pattern of isolation-by-distance, which we interpret as being the result of historical colonization events. We propose the existence of at least one glacial refugium in the SE of the Iberian Peninsula. Our findings challenge predictions of the Monopolization hypothesis, since coexistence (i.e., secondary contact) of divergent lineages in some ponds in the Iberian Peninsula is common. Our results indicate that phylogeographic structures in small organisms can be very complex and that gene flow between diverse lineages after population establishment can indeed occur.

The Punta Lucero Quarry site (Zierbena, Bizkaia): a window into the Middle Pleistocene in the Northern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Gómez-Olivencia, Asier; Sala, Nohemi; Arceredillo, Diego; García, Nuria; Martínez-Pillado, Virginia; Rios-Garaizar, Joseba; Garate, Diego; Solar, Gonzalo; Libano, Iñaki

2015-08-01

The period between the end of the Early Pleistocene and the mid-Middle Pleistocene (roughly between 1.0 and 0.4 Ma BP) is of great interest in Western Europe. It witnessed several climatic oscillations and changes in the fauna, the demise of a hominin species and the appearance of another, along with important cultural and technological changes. Thus, the few available sites with these chronologies is vital to the understanding of the tempo and mode of these changes. Middle Pleistocene sites in the Northern Iberian Peninsula are very rare. Here we present the study of the site found at the Punta Lucero Quarry (Biscay province, Northern Iberian Peninsula), which includes for the first time the complete collection from the site. The fossil association from this site includes several ungulates, such as a Megacerine deer, Cervus elaphus, large bovids (likely both Bos primigenius and Bison sp. are present), Stephanorhinus sp., and carnivores, such as Homotherium latidens, Panthera gombaszoegensis, Canis mosbachensis and Vulpes sp. This association is typical of a middle Middle Pleistocene chronology and would be the oldest macro-mammal site in the Eastern Cantabrian region. This site would likely correspond to a chronology after Mode 1 technological complex and before the arrival of Mode 2 technology in this region. Thus, it offers a glimpse into the paleoecological conditions slightly prior to or contemporaneous with the first Acheulian makers in the northern fringe of the Iberian Peninsula.

Effect of different carotenoid-containing diets on the vitamin A levels and colour parameters in Iberian pigs' tissues: utility as biomarkers of traceability.

PubMed

Álvarez, R; Vicario, I M; Meléndez-Martínez, A J; Alcalde, M J

2014-10-01

Retinol and fat colour parameters in Iberian pigs fed on different carotenoid-containing diets were assessed. Thirty animals in two groups were considered: Iberian breed pigs fed on acorns and grass (Montanera) and on concentrate (Cebo). Carotenoids and retinoids were analysed in the diets and in plasma, liver and perirenal fat of the animals by HPLC and HPLC-MS. Retinol levels in plasma and fat were similar in Montanera and Cebo animals. The utility of retonids and colour parameters as traceability index was also explored. Retinoids in liver classified correctly 93% of the animals according to their diet L* and hab. CIELAB parameters of the perirenal fat discriminated correctly 78.6% of the animals according to their diet. L* values for the Montanera animals were significantly different (P<0.01) from those fed on concentrate. It can be claimed that the liver retinol profile and fat colour parameters can be useful for feeding traceability purposes in Iberian pigs breed in Montanera and Cebo. Copyright © 2014 Elsevier Ltd. All rights reserved.

400 Years of summer hydroclimate from stable isotopes in Iberian trees

NASA Astrophysics Data System (ADS)

Andreu-Hayles, Laia; Ummenhofer, Caroline C.; Barriendos, Mariano; Schleser, Gerhard H.; Helle, Gerhard; Leuenberger, Markus; Gutiérrez, Emilia; Cook, Edward R.

2017-07-01

Tree rings are natural archives that annually record distinct types of past climate variability depending on the parameters measured. Here, we use ring-width and stable isotopes in cellulose of trees from the northwestern Iberian Peninsula (IP) to understand regional summer hydroclimate over the last 400 years and the associated atmospheric patterns. Correlations between tree rings and climate data demonstrate that isotope signatures in the targeted Iberian pine forests are very sensitive to water availability during the summer period, and are mainly controlled by stomatal conductance. Non-linear methods based on extreme events analysis allow for capturing distinct seasonal climatic variability recorded by tree-ring parameters and asymmetric signals of the associated atmospheric features. Moreover, years with extreme high (low) values in the tree-ring records were characterised by coherent large-scale atmospheric circulation patterns with reduced (enhanced) moisture transport onto the northwestern IP. These analyses of extremes revealed that high/low proxy values do not necessarily correspond to mirror images in the atmospheric anomaly patterns, suggesting different drivers of these patterns and the corresponding signature recorded in the proxies. Regional hydroclimate features across the broader IP and western Europe during extreme wet/dry summers detected by the northwestern IP trees compare favourably to independent multicentury sea level pressure and drought reconstructions for Europe. Historical records also validate our findings that attribute non-linear moisture signals recorded by extreme tree-ring values to distinct large-scale atmospheric patterns and allow for 400-year reconstructions of the frequency of occurrence of extreme conditions in late spring and summer hydroclimate.

Conservation genetics of the endangered Iberian steppe plant Ferula loscosii (Apiaceae).

PubMed

Pérez-Collazos, E; Catalán, P

2008-07-01

Ferula loscosii (Lange) Willk (Apiaceae) is a threatened endemic species native to the Iberian Peninsula. The plant has a narrow and disjunct distribution in three regions, NE, C and SE Spain. Genetic variability within and among 11 populations from its natural distribution was assessed using allozymes. Intermediate levels of genetic diversity were detected in F. loscosii (P(99%) = 36.83; H(E) = 0.125; H(T) = 0.152). However, the highest genetic diversity (58%) corresponded to the threatened populations from SE and C Spain (H(T) = 0.169) rather than the more abundant and larger populations from NE Spain (Ebro valley) (H(T) = 0.122). Low to moderate levels of genetic structure were found among regional ranges (G(ST) = 0.134), and several statistical spatial correlation analyses corroborated substantial genetic differentiation among the three main regional ranges. However, no significant genetic differentiation was found among the NE Spain populations, except for a northernmost population that is geographically isolated. Outcrossing mating and other biological traits of the species could account for the maintenance of the present values of genetic diversity within populations. The existence of an ancestral late Tertiary wider distribution of the species in SE and C Spain, followed by the maintenance of different Quaternary refugia in these warmer areas, together with a more recent and rapid post-glacial expansion towards NE Spain, are arguments that could explain the low genetic variability and structure found in the Ebro valley and the higher levels of diversity in the southern Iberian populations.

Abundance and fragmentation patterns of the ecosystem engineer Lithophyllum byssoides (Lamarck) Foslie along the Iberian Peninsula Atlantic coast. Conservation and management implications

NASA Astrophysics Data System (ADS)

Veiga, Puri; Rubal, Marcos; Cacabelos, Eva; Moreira, Juan; Sousa-Pinto, Isabel

2013-10-01

The crustose calcareous red macroalgae Lithophyllum byssoides (Lamarck) Foslie is a common ecosystem engineer along the Atlantic and Mediterranean coast of the Iberian Peninsula. This species is threatened by several anthropogenic impacts acting at different spatial scales, such as pollution or global warming. The aim of this study is to identify scales of spatial variation in the abundance and fragmentation patterns of L. byssoides along the Atlantic coast of the Iberian Peninsula. For this aim we used a hierarchical sampling design considering four spatial scales (from metres to 100s of kilometres). Results of the present study indicated no significant variability among regions investigated whereas significant variability was found at the scales of shore and site in spatial patterns of abundance and fragmentation of L. byssoides. Variance components were higher at the spatial scale of shore for abundance and fragmentation of L. byssoides with the only exception of percentage cover and thus, processes acting at the scale of 10s of kilometres seem to be more relevant in shaping the spatial variability both in abundance and fragmentation of L. byssoides. These results provided quantitative estimates of abundance and fragmentation of L. byssoides at the Atlantic coast of the Iberian Peninsula establishing the observational basis for future assessment, monitoring and experimental investigations to identify the processes and anthropogenic impacts affecting L. byssoides populations. Finally we have also identified percentage cover and patch density as the best variables for long-term monitoring programs aimed to detect future anthropogenic impacts on L. byssoides. Therefore, our results have important implications for conservation and management of this valuable ecosystem engineer along the Atlantic coast of the Iberian Peninsula.

CHALLENGES OF PASSIVE TREATMENT OF METAL MINE DRAINAGE IN THE IBERIAN PYRITE BELT (SOUTHERN SPAIN): PRELIMINARY STUDIES

EPA Science Inventory

AMD in the Iberian Pyrite Belt is a problem of global scale. Successful implementation of passive treatment systems could remediate at least part of this problem at reasonable costs. However, initial trials with ALD and RAPS based on gravel size limestone failed due to rapid loss...

Climate variability during the Holocene inferred from northeastern Iberian speleothems

NASA Astrophysics Data System (ADS)

Moreno, A.; Bartolomé, M.; Sancho, C.; Belmonte, Á.; Stoll, H.; Cacho, I.; Edwards, R. L.; Hellstrom, J.

2012-04-01

Although the general climate trends during the Holocene in the Iberian Peninsula have been well described after the study of marine and lacustrine records, many questions regarding the timing of some of the events together with the characterization of the higher-frequency climate variability are still poorly understood. New speleothem records from several caves in northeastern Iberia provide data to explore Holocene climate changes. The selected caves are located in a latitudinal transect from the Pyrenees to the Iberian Range and placed at different altitude. Two of them, 5 de Agosto and Pot au Feu, belong to the same karstic complex in Cotiella massif (Central Pyrenees, 1600 m asl). Seso Cave, also in the Central Pyrenees but at 781 m of altitude, and Molinos cave, a cavity very rich in speleothems located at 1040 m in the Iberian Range, complete the transect. Although in all the caves precipitation coming from Atlantic fronts dominates over the year, a significant Mediterranean influence, specially in summer months, is identified after rainfall monitoring. Speleothem formation during the Holocene occurred at a very low pace in 5 de Agosto cave (80yrs/mm) and increased dramatically at low-altitude caves and during particular periods proved to be wetter (eg. Early Holocene in Molinos cave, less than 10yr/mm). In Seso and Pot au Feu caves, up to seven studied speleothems only grew during short climatic events such as the Iron Cold Period (3000-2500 cal yr BP) or the Little Ice Age (1300-1850 yr AD) that, although cold, were particularly humid periods in northeastern Spain. First stable isotope results highlight the importance of comparing speleothems with similar growing rates and from the same cave to extract climate information and discard other influences. From the integration of four stalagmites from Molinos cave covering since the Holocene onset to 2000 cal yrs BP, the Early Holocene (11.7-8.5 ka BP) with d13C values between -11 and - 9‰ appears as the

Iberian fish records in the vertebrate collection of the Museum of Zoology of the University of Navarra

PubMed Central

Rodeles, Amaia A.; Galicia, David; Miranda, Rafael

2016-01-01

The study of freshwater fish species biodiversity and community composition is essential for understanding river systems, the effects of human activities on rivers, and the changes these animals face. Conducting this type of research requires quantitative information on fish abundance, ideally with long-term series and fish body measurements. This Data Descriptor presents a collection of 12 datasets containing a total of 146,342 occurrence records of 41 freshwater fish species sampled in 233 localities of various Iberian river basins. The datasets also contain 148,749 measurement records (length and weight) for these fish. Data were collected in different sampling campaigns (from 1992 to 2015). Eleven datasets represent large projects conducted over several years, and another combines small sampling campaigns. The Iberian Peninsula contains high fish biodiversity, with numerous endemic species threatened by various menaces, such as water extraction and invasive species. These data may support the development of large biodiversity conservation studies. PMID:27727236

Iberian fish records in the vertebrate collection of the Museum of Zoology of the University of Navarra.

PubMed

Rodeles, Amaia A; Galicia, David; Miranda, Rafael

2016-10-11

The study of freshwater fish species biodiversity and community composition is essential for understanding river systems, the effects of human activities on rivers, and the changes these animals face. Conducting this type of research requires quantitative information on fish abundance, ideally with long-term series and fish body measurements. This Data Descriptor presents a collection of 12 datasets containing a total of 146,342 occurrence records of 41 freshwater fish species sampled in 233 localities of various Iberian river basins. The datasets also contain 148,749 measurement records (length and weight) for these fish. Data were collected in different sampling campaigns (from 1992 to 2015). Eleven datasets represent large projects conducted over several years, and another combines small sampling campaigns. The Iberian Peninsula contains high fish biodiversity, with numerous endemic species threatened by various menaces, such as water extraction and invasive species. These data may support the development of large biodiversity conservation studies.

Zilsel's Thesis, Maritime Culture, and Iberian Science in Early Modern Europe.

PubMed

Leitão, Henrique; Sánchez, Antonio

2017-01-01

Zilsel's thesis on the artisanal origins of modern science remains one of the most original proposals about the emergence of scientific modernity. We propose to inspect the scientific developments in Iberia in the early modern period using Zilsel's ideas as a guideline. Our purpose is to show that his ideas illuminate the situation in Iberia but also that the Iberian case is a remarkable illustration of Zilsel's thesis. Furthermore, we argue that Zilsel's thesis is essentially a sociological explanation that cannot be applied to isolated cases; its use implies global events that involve extended societies over large periods of time.

Plant-based remedies for wolf bites and rituals against wolves in the Iberian Peninsula: Therapeutic opportunities and cultural values for the conservation of biocultural diversity.

PubMed

González, José A; Carvalho, Ana Maria; Vallejo, José Ramón; Amich, Francisco

2017-09-14

Combined approaches to local knowledge and folk plant use improve awareness and promote effective strategies for the conservation of significant biocultural patrimony. Moreover, the information reported might be the basis for further appropriate phytochemical and pharmacological research. Therefore we provide an insight into traditional herbal remedies and practices for healing bite injuries in humans and domestic animals caused by the Iberian wolf. Wolf bites are associated with inflammatory processes and rabies is a potential complication AIMS: This paper describes and summarises the medicinal-veterinary empirical and ritual uses of the Iberian flora for wolf injuries and reviews the ethnopharmacological data of specific plants that are already published. The Iberian wolf is a critically endangered subspecies of the grey wolf. Livestock attacks attributed to wolves are increasingly frequent in the Iberian Peninsula, resulting in serious social problems. Interesting strategies for Iberian wolf conservation might be related to traditional grazing practices that are deeply linked with empirical knowledge and local practices passed on by oral tradition, which are also vulnerable now. Based on documentary sources from the beginning of the twentieth century to the present, we systematically searched old monographs, regional documents, technical papers, project reports, as well as the international and national databases and the available scientific literature, without restrictions regarding the language of the publications consulted. A total of 39 remedies for healing wolf bite injuries in humans and domestic animals was reported, highlighting the medicinal use of 33 species of vascular plants, mostly wild herbs, belonging to 18 botanical families. The use of wood ashes was also reported. The number of use-reports found represents a very high number considering similar European studies. Leaves were the predominant plant part mentioned. Boiling plant materials in water

Vocal anatomy, tongue protrusion behaviour and the acoustics of rutting roars in free-ranging Iberian red deer stags (Cervus elaphus hispanicus).

PubMed

Frey, Roland; Volodin, Ilya; Volodina, Elena; Carranza, Juan; Torres-Porras, Jerónimo

2012-03-01

Roaring in rutting Iberian red deer stags Cervus elaphus hispanicus is unusual compared to other subspecies of red deer, which radiated from the Iberian refugium after the last glacial maximum. In all red deer stags, the larynx occupies a permanent low mid-neck resting position and is momentarily retracted almost down to the rostral end of the sternum during the production of rutting calls. Simultaneous with the retraction of the larynx, male Iberian red deer pronouncedly protrude the tongue during most of their rutting roars. This poses a mechanical challenge for the vocal tract (vt) and for the hyoid apparatus, as tongue and larynx are strongly pulled in opposite directions. This study (i) examines the vocal anatomy and the acoustics of the rutting roars in free-ranging male C. e. hispanicus; (ii) establishes a potential mechanism of simultaneous tongue protrusion and larynx retraction by applying a two-dimensional model based on graphic reconstructions in single video frames of unrestrained animals; and (iii) advances a hypothesis of evaporative cooling by tongue protrusion in the males of a subspecies of red deer constrained to perform all of the exhausting rutting activities, including acoustic display, in a hot and arid season. © 2012 The Authors. Journal of Anatomy © 2012 Anatomical Society.

Vocal anatomy, tongue protrusion behaviour and the acoustics of rutting roars in free-ranging Iberian red deer stags (Cervus elaphus hispanicus)

PubMed Central

Frey, Roland; Volodin, Ilya; Volodina, Elena; Carranza, Juan; Torres-Porras, Jerónimo

2012-01-01

Roaring in rutting Iberian red deer stags Cervus elaphus hispanicus is unusual compared to other subspecies of red deer, which radiated from the Iberian refugium after the last glacial maximum. In all red deer stags, the larynx occupies a permanent low mid-neck resting position and is momentarily retracted almost down to the rostral end of the sternum during the production of rutting calls. Simultaneous with the retraction of the larynx, male Iberian red deer pronouncedly protrude the tongue during most of their rutting roars. This poses a mechanical challenge for the vocal tract (vt) and for the hyoid apparatus, as tongue and larynx are strongly pulled in opposite directions. This study (i) examines the vocal anatomy and the acoustics of the rutting roars in free-ranging male C. e. hispanicus; (ii) establishes a potential mechanism of simultaneous tongue protrusion and larynx retraction by applying a two-dimensional model based on graphic reconstructions in single video frames of unrestrained animals; and (iii) advances a hypothesis of evaporative cooling by tongue protrusion in the males of a subspecies of red deer constrained to perform all of the exhausting rutting activities, including acoustic display, in a hot and arid season. PMID:22257361

Characterization of a xylose containing oligosaccharide, an inhibitor of multidrug resistance in Staphylococcus aureus, from Ipomoea pes-caprae.

PubMed

Escobedo-Martínez, Carolina; Cruz-Morales, Sara; Fragoso-Serrano, Mabel; Rahman, M Mukhlesur; Gibbons, Simon; Pereda-Miranda, Rogelio

2010-10-01

Pescaprein XVIII (1), a type of bacterial efflux pump inhibitor, was obtained from the CHCl(3)-soluble resin glycosides of beach morning glory (Ipomoea pes-caprae). The glycosidation sequence for pescaproside C, the glycosidic acid core of the lipophilic macrolactone 1 containing D-xylose and L-rhamnose, was characterized by means of several NMR techniques and FAB mass spectrometry. Recycling HPLC also yielded eight non-cytotoxic bacterial resistance modifiers, the two pescapreins XIX (2) and XX (3) as well as the known murucoidin VI (4), pecapreins II (6) and III (7), and stoloniferins III (5), IX (8) and X (9), all of which contain simonic acid B as their oligosaccharide core. Compounds 1-9 were tested for in vitro antibacterial and resistance-modifying activity against strains of Staphylococcus aureus possessing multidrug resistance efflux mechanisms. All of the pescapreins potentiated the action of norfloxacin against the NorA over-expressing strain by 4-fold (8 microg/mL from 32 microg/mL) at a concentration of 25 microg/mL. Copyright © 2010 Elsevier Ltd. All rights reserved.

An Iberian climatology of solar radiation obtained from WRF regional climate simulations for 1950-2010 period

NASA Astrophysics Data System (ADS)

Perdigão, João; Salgado, Rui; Magarreiro, Clarisse; Soares, Pedro M. M.; Costa, Maria João; Dasari, Hari Prasad

2017-12-01

The mesoscale Weather Research and Forecasting (WRF) Model is used over the Iberian Peninsula to generate 60 years (1950-2010) of climate data, at 5 km resolution, in order to evaluate and characterize the incident shortwave downward radiation at the surface (SW ↓), in present climate. The simulated values of SW ↓ in the period 2000-2009 were compared with data measured in Spanish and Portuguese meteorological stations before and a statistical BIAS correction was applied using data from Clouds and the Earth's Radiant Energy System (CERES), on board four different satellites. The spatial and temporal comparison between WRF results and observations show a good agreement for the analyzed period, although the model overestimates observations. This overestimation has a mean normalized bias of about 7% after BIAS correction (or 17% for original WRF output). Additionally, the present simulation was confronted against another previously validated WRF simulation performed with different resolution and set of parametrizations, showing comparable results. WRF adequately reproduces the observational features of SW ↓ with correlation coefficients above 0.8 in annual and seasonal basis. 60 years of simulated SW ↓ over the Iberian Peninsula were produced, which showed annual mean values that range from 130 W/m2, in the northern regions, to a maximum of around 230 W/m2 in the southeast of the Iberian Peninsula (IP). SW ↓ over IP shows a positive gradient from north to south and from west to east, with local effects influenced by topography and distance to the coast. The analysis of the simulated cloud fraction indicates that clear sky days are found in > 30% of the period at the southern area of IP, particularly in the Algarve (Portugal) and Andalusia (Spain), and this value increases significantly in the summer season for values above 80%.

Assessing methods for developing crop forecasting in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Ines, A. V. M.; Capa Morocho, M. I.; Baethgen, W.; Rodriguez-Fonseca, B.; Han, E.; Ruiz Ramos, M.

2015-12-01

Seasonal climate prediction may allow predicting crop yield to reduce the vulnerability of agricultural production to climate variability and its extremes. It has been already demonstrated that seasonal climate predictions at European (or Iberian) scale from ensembles of global coupled climate models have some skill (Palmer et al., 2004). The limited predictability that exhibits the atmosphere in mid-latitudes, and therefore de Iberian Peninsula (PI), can be managed by a probabilistic approach based in terciles. This study presents an application for the IP of two methods for linking tercile-based seasonal climate forecasts with crop models to improve crop predictability. Two methods were evaluated and applied for disaggregating seasonal rainfall forecasts into daily weather realizations: 1) a stochastic weather generator and 2) a forecast tercile resampler. Both methods were evaluated in a case study where the impacts of two seasonal rainfall forecasts (wet and dry forecast for 1998 and 2015 respectively) on rainfed wheat yield and irrigation requirements of maize in IP were analyzed. Simulated wheat yield and irrigation requirements of maize were computed with the crop models CERES-wheat and CERES-maize which are included in Decision Support System for Agrotechnology Transfer (DSSAT v.4.5, Hoogenboom et al., 2010). Simulations were run at several locations in Spain where the crop model was calibrated and validated with independent field data. These methodologies would allow quantifying the benefits and risks of a seasonal climate forecast to potential users as farmers, agroindustry and insurance companies in the IP. Therefore, we would be able to establish early warning systems and to design crop management adaptation strategies that take advantage of favorable conditions or reduce the effect of adverse ones. ReferencesPalmer, T. et al., 2004. Development of a European multimodel ensemble system for seasonal-to-interannual prediction (DEMETER). Bulletin of the

High resolution reconstruction of monthly precipitation of Iberian Peninsula using circulation weather types

NASA Astrophysics Data System (ADS)

Cortesi, N.; Trigo, R.; Gonzalez-Hidalgo, J. C.; Ramos, A. M.

2012-06-01

Precipitation over the Iberian Peninsula (IP) is highly variable and shows large spatial contrasts between wet mountainous regions, to the north, and dry regions in the inland plains and southern areas. In this work, a high-density monthly precipitation dataset for the IP was coupled with a set of 26 atmospheric circulation weather types (Trigo and DaCamara, 2000) to reconstruct Iberian monthly precipitation from October to May with a very high resolution of 3030 precipitation series (overall mean density one station each 200 km2). A stepwise linear regression model with forward selection was used to develop monthly reconstructed precipitation series calibrated and validated over 1948-2003 period. Validation was conducted by means of a leave-one-out cross-validation over the calibration period. The results show a good model performance for selected months, with a mean coefficient of variation (CV) around 0.6 for validation period, being particularly robust over the western and central sectors of IP, while the predicted values in the Mediterranean and northern coastal areas are less acute. We show for three long stations (Lisbon, Madrid and Valencia) the comparison between model and original data as an example to how these models can be used in order to obtain monthly precipitation fields since the 1850s over most of IP for this very high density network.

Trichinella pseudospiralis in the Iberian peninsula.

PubMed

Zamora, M J; Alvarez, M; Olmedo, J; Blanco, M C; Pozio, E

2015-06-15

Nematode worms of the genus Trichinella are zoonotic parasites circulating in most continents, including Europe. In Spain, Trichinella spiralis and Trichinella britovi are highly prevalent in wildlife but seldom in domestic pigs. In Portugal, only T. britovi was documented in wild carnivores. In the period 2006-2013 in Spain, 384 (0.0001%) pigs and 1399 (0.20%) wild boars (Sus scrofa) were positive for Trichinella spp. larvae, which were identified as T. spiralis or T. britovi. In 2014, Trichinella pseudospiralis larvae were isolated from a wild boar hunted in the Gerona province, Cataluña region, North-East of Spain, near the border to France. This is the first report of T. pseudospiralis in the Iberian peninsula, which suggests a broad distribution area of this zoonotic nematode in Europe. Since larvae of this Trichinella species do not encapsulate in the host muscles, they can be detected only by artificial digestion of muscle samples. T. pseudospiralis is the only Trichinella species infecting both mammals and birds. Birds can spread this pathogen over great distances including islands triggering new foci of infections in areas previously considered at low risk for this pathogen. Copyright © 2015 Elsevier B.V. All rights reserved.

Direct and maternal additive effects are not the main determinants of Iberian piglet perinatal mortality.

PubMed

Muñoz, M; Rodríguez, M C; García-Cortes, L A; González, A; García-Casco, J M; Silió, L

2017-12-01

Data of 127,800 Iberian piglets were used to study genetic parameters of mortality at birth at the piglet level. These records proceed from three data sets: 4,987 litter of 2,156 sows of a dam line, 2,768 litter of 817 sows of a complete diallel cross between four Iberian strains and 7,153 litter of 2,113 sows of the Torbiscal composite line. Perinatal mortality was considered as a binary trait, and Bayesian threshold animal models were fitted to separately analyse the three data sets. The posterior means of direct heritability were 0.010, 0.004 and 0.003, and those of maternal heritability were 0.034, 0.011 and 0.014 for dam line, diallel cross and Torbiscal line, respectively. Important effects of litter size and parity order were inferred in the three data sets, of within-breed cross-breeding parameters in the diallel cross and of sex and sow handling in the Torbiscal line Therefore, the inclusion of perinatal mortality in the objective of selection is questionable in this breed and strategies for reducing piglet mortality successful in other breeds should be considered. © 2017 Blackwell Verlag GmbH.

A shift in the spatial pattern of Iberian droughts during the 17th century

NASA Astrophysics Data System (ADS)

Domínguez-Castro, F.; García-Herrera, R.; Ribera, P.; Barriendos, M.

2010-09-01

In this paper, series of drought occurrence and drought extension in the Iberian Peninsula are constructed for the 1600-1750 period from seven rogation series. These rogation ceremony records come from Bilbao, Catalonia, Zamora, Zaragoza, Toledo, Murcia and Seville. They are distributed across the Peninsula and include the areas with the most characteristic Iberian climate types, influenced by the Atlantic and the Mediterranean conditions, described from modern data. A seasonal division of the series shows that spring is a critical season for rogation series in most of Iberia, being Bilbao the only site were the highest number of rogations is detected for a different season. The annual analysis of the series shows a dramatic difference between the first half of the 17th century when droughts are characterized by its local character; and the rest of the period, when they affect to broader regions or even to the whole Peninsula. The analysis of spring series confirms the existence of the two periods detected in the annual analysis. Finally, secondary documentary sources are used to further characterise the two most extended droughts in the period, 1664 and 1680, and to verify the extension of the areas affected by droughts recorded through rogation series.

Adapted conservation measures are required to save the Iberian lynx in a changing climate

NASA Astrophysics Data System (ADS)

Fordham, D. A.; Akçakaya, H. R.; Brook, B. W.; Rodríguez, A.; Alves, P. C.; Civantos, E.; Triviño, M.; Watts, M. J.; Araújo, M. B.

2013-10-01

The Iberian lynx (Lynx pardinus) has suffered severe population declines in the twentieth century and is now on the brink of extinction. Climate change could further threaten the survival of the species, but its forecast effects are being neglected in recovery plans. Quantitative estimates of extinction risk under climate change have so far mostly relied on inferences from correlative projections of species' habitat shifts. Here we use ecological niche models coupled to metapopulation simulations with source-sink dynamics to directly investigate the combined effects of climate change, prey availability and management intervention on the persistence of the Iberian lynx. Our approach is unique in that it explicitly models dynamic bi-trophic species interactions in a climate change setting. We show that anticipated climate change will rapidly and severely decrease lynx abundance and probably lead to its extinction in the wild within 50 years, even with strong global efforts to mitigate greenhouse gas emissions. In stark contrast, we also show that a carefully planned reintroduction programme, accounting for the effects of climate change, prey abundance and habitat connectivity, could avert extinction of the lynx this century. Our results demonstrate, for the first time, why considering prey availability, climate change and their interaction in models is important when designing policies to prevent future biodiversity loss.

The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula.

PubMed

Melo-Ferreira, J; Boursot, P; Randi, E; Kryukov, A; Suchentrunk, F; Ferrand, N; Alves, P C

2007-02-01

The climatic fluctuations during glaciations have affected differently arctic and temperate species. In the northern hemisphere, cooling periods induced the expansion of many arctic species to the south, while temperate species were forced to retract in southern refugia. Consequently, in some areas the alternation of these species set the conditions for competition and eventually hybridization. Hares in the Iberian Peninsula appear to illustrate this phenomenon. Populations of Iberian hare (Lepus granatensis), brown hare (Lepus europaeus) and broom hare (Lepus castroviejoi) in Northern Iberia harbour mitochondrial haplotypes from the mountain hare (Lepus timidus), a mainly boreal and arctic species presently absent from the peninsula. To understand the history of this past introgression we analysed sequence variation and geographical distribution of mitochondrial control region and cytochrome b haplotypes of L. timidus origin found in 378 specimens of these four species. Among 124 L. timidus from the Northern Palaearctic and the Alps we found substantial nucleotide diversity (2.3%) but little differentiation between populations. Based on the mismatch distribution of the L. timidus sequences, this could result from an expansion at a time of temperature decrease favourable to this arctic species. The nucleotide diversity of L. timidus mtDNA found in Iberian L. granatensis, L. europaeus and L. castroviejoi (183, 70 and 1 specimens, respectively) was of the same order as that in L. timidus over its range (1.9%), suggesting repeated introgression of multiple lineages. The structure of the coalescent of L. granatensis sequences indicates that hybridization with L. timidus was followed by expansion of the introgressed haplotypes, as expected during a replacement with competition, and occurred when temperatures started to rise, favouring the temperate species. Whether a similar scenario explains the introgression into Iberian L. europaeus remains unclear but it is possible

EUNIS habitat's thresholds for the Western coast of the Iberian Peninsula - A Portuguese case study

NASA Astrophysics Data System (ADS)

Monteiro, Pedro; Bentes, Luis; Oliveira, Frederico; Afonso, Carlos M. L.; Rangel, Mafalda O.; Gonçalves, Jorge M. S.

2015-06-01

The European Nature Information System (EUNIS) has been implemented for the establishment of a marine European habitats inventory. Its hierarchical classification is defined and relies on environmental variables which primarily constrain biological communities (e.g. substrate types, sea energy level, depth and light penetration). The EUNIS habitat classification scheme relies on thresholds (e.g. fraction of light and energy) which are based on expert judgment or on the empirical analysis of the above environmental data. The present paper proposes to establish and validate an appropriate threshold for energy classes (high, moderate and low) and for subtidal biological zonation (infralittoral and circalittoral) suitable for EUNIS habitat classification of the Western Iberian coast. Kinetic wave-induced energy and the fraction of photosynthetically available light exerted on the marine bottom were respectively assigned to the presence of kelp (Saccorhiza polyschides, Laminaria hyperborea and Laminaria ochroleuca) and seaweed species in general. Both data were statistically described, ordered from the largest to the smallest and percentile analyses were independently performed. The threshold between infralittoral and circalittoral was based on the first quartile while the 'moderate energy' class was established between the 12.5 and 87.5 percentiles. To avoid data dependence on sampling locations and assess the confidence interval a bootstrap technique was applied. According to this analysis, more than 75% of seaweeds are present at locations where more than 3.65% of the surface light reaches the sea bottom. The range of energy levels estimated using S. polyschides data, indicate that on the Iberian West coast the 'moderate energy' areas are between 0.00303 and 0.04385 N/m2 of wave-induced energy. The lack of agreement between different studies in different regions of Europe suggests the need for more standardization in the future. However, the obtained thresholds in

The cognitive capabilities of farm animals: categorisation learning in dwarf goats (Capra hircus).

PubMed

Meyer, Susann; Nürnberg, Gerd; Puppe, Birger; Langbein, Jan

2012-07-01

The ability to establish categories enables organisms to classify stimuli, objects and events by assessing perceptual, associative or rational similarities and provides the basis for higher cognitive processing. The cognitive capabilities of farm animals are receiving increasing attention in applied ethology, a development driven primarily by scientifically based efforts to improve animal welfare. The present study investigated the learning of perceptual categories in Nigerian dwarf goats (Capra hircus) by using an automated learning device installed in the animals' pen. Thirteen group-housed goats were trained in a closed-economy approach to discriminate artificial two-dimensional symbols presented in a four-choice design. The symbols belonged to two categories: category I, black symbols with an open centre (rewarded) and category II, the same symbols but filled black (unrewarded). One symbol from category I and three different symbols from category II were used to define a discrimination problem. After the training of eight problems, the animals were presented with a transfer series containing the training problems interspersed with completely new problems made from new symbols belonging to the same categories. The results clearly demonstrate that dwarf goats are able to form categories based on similarities in the visual appearance of artificial symbols and to generalise across new symbols. However, the goats had difficulties in discriminating specific symbols. It is probable that perceptual problems caused these difficulties. Nevertheless, the present study suggests that goats housed under farming conditions have well-developed cognitive abilities, including learning of open-ended categories. This result could prove beneficial by facilitating animals' adaptation to housing environments that favour their cognitive capabilities.

400 years of summer hydroclimate from stable isotopes in Iberian trees

NASA Astrophysics Data System (ADS)

Andreu-Hayles, Laia; Ummenhofer, Caroline C.; Barriendos, Mariano; Schleser, Gerhard H.; Helle, Gerhard; Leuenberger, Markus; Gutierrez, Emilia; Cook, Edward R.

2017-04-01

Tree rings are natural archives that annually record distinct types of past climate variability depending on the parameters measured. Here, we use ring-width and stable isotopes in cellulose of trees from the northwestern Iberian Peninsula (IP) to understand regional summer hydroclimate over the last 400 years and the associated atmospheric patterns. Correlations between tree rings and climate data demonstrate that isotope signatures in the targeted Iberian pine forests are very sensitive to water availability during the summer period, and are mainly controlled by stomatal conductance. Non-linear methods based on extreme events analysis allow for capturing distinct seasonal climatic variability recorded by tree-ring parameters and asymmetric signals of the associated atmospheric features. Moreover, years with extreme high (low) values in the tree-ring records were characterised by coherent large-scale atmospheric circulation patterns with reduced (enhanced) moisture transport onto the northwestern IP. These analyses of extremes revealed that high/low proxy values do not necessarily correspond to mirror images in the atmospheric anomaly patterns, suggesting different drivers of these patterns and the corresponding signature recorded in the proxies. Regional hydroclimate features across the broader IP and western Europe during extreme wet/dry summers detected by the northwestern IP trees compare favourably to an independent multicentury sea level pressure and drought reconstruction for Europe. Historical records also validate our findings that attribute non-linear moisture signals recorded by extreme tree-ring values to distinct large-scale atmospheric patterns and allow for 400-yr reconstructions of the frequency of occurrence of extreme conditions in summer hydroclimate. We will discuss how the results for Lillo compare with other records.

Airborne pollen trends in the Iberian Peninsula.

PubMed

Galán, C; Alcázar, P; Oteros, J; García-Mozo, H; Aira, M J; Belmonte, J; Diaz de la Guardia, C; Fernández-González, D; Gutierrez-Bustillo, M; Moreno-Grau, S; Pérez-Badía, R; Rodríguez-Rajo, J; Ruiz-Valenzuela, L; Tormo, R; Trigo, M M; Domínguez-Vilches, E

2016-04-15

Airborne pollen monitoring is an effective tool for studying the reproductive phenology of anemophilous plants, an important bioindicator of plant behavior. Recent decades have revealed a trend towards rising airborne pollen concentrations in Europe, attributing these trends to an increase in anthropogenic CO2 emissions and temperature. However, the lack of water availability in southern Europe may prompt a trend towards lower flowering intensity, especially in herbaceous plants. Here we show variations in flowering intensity by analyzing the Annual Pollen Index (API) of 12 anemophilous taxa across 12 locations in the Iberian Peninsula, over the last two decades, and detecting the influence of the North Atlantic Oscillation (NAO). Results revealed differences in the distribution and flowering intensity of anemophilous species. A negative correlation was observed between airborne pollen concentrations and winter averages of the NAO index. This study confirms that changes in rainfall in the Mediterranean region, attributed to climate change, have an important impact on the phenology of plants. Copyright © 2016 Elsevier B.V. All rights reserved.

Meat mixture detection in Iberian pork sausages.

PubMed

Ortiz-Somovilla, V; España-España, F; De Pedro-Sanz, E J; Gaitán-Jurado, A J

2005-11-01

Five homogenized meat mixture treatments of Iberian (I) and/or Standard (S) pork were set up. Each treatment was analyzed by NIRS as a fresh product (N=75) and as dry-cured sausage (N=75). Spectra acquisition was carried out using DA 7000 equipment (Perten Instruments), obtaining a total of 750 spectra. Several absorption peaks and bands were selected as the most representative for homogenized dry-cured and fresh sausages. Discriminant analysis and mixture prediction equations were carried out based on the spectral data gathered. The best results using discriminant models were for fresh products, with 98.3% (calibration) and 60% (validation) correct classification. For dry-cured sausages 91.7% (calibration) and 80% (validation) of the samples were correctly classified. Models developed using mixture prediction equations showed SECV=4.7, r(2)=0.98 (calibration) and 73.3% of validation set were correctly classified for the fresh product. These values for dry-cured sausages were SECV=5.9, r(2)=0.99 (calibration) and 93.3% correctly classified for validation.

Regional Climate Simulations of the Hydrological Cycle in the Iberian Peninsula with a Coupled WRF-HYDRO Model

NASA Astrophysics Data System (ADS)

Rios-Entenza, A.; Miguez-Macho, G.

2008-12-01

Land-atmosphere water exchanges and heat fluxes play an important role in climate and particularly in controlling precipitation in water-limited regions. One of such regions is the Iberian Peninsula, and in this study we examine the relevance of water recycling in convective precipitation regimes of the Fall and Spring there, when rainfall is critical for agriculture and many other human activities. We conducted simulations with WRF-ARW model at 5 km horizontal resolution, using a 1500 km x 1500 km nested grid that covers the Iberian Peninsula, with a parent domain that uses spectral nudging in order to avoid the distortion of the large-scale circulation caused by the interaction of the modeled flow with the lateral boundaries of the nested grid. For land-surface interactions we coupled WRF with the LEAF-HYDRO land surface model, which includes water table dynamics. We use therefore a tool that simulates the entire water cycle, including the water table, which has been reported to be critical for soil moisture dynamics in semi-arid regions like the Iberian Peninsula. For each one of the events that we selected, we performed two simulations: a control one, where all land-atmosphere feedbacks are taken into account, and the experiment, where infiltration of the precipitated water into the soil was suppressed. In this manner we explore the role of upward latent and sensible heat fluxes and evapotranspiration in precipitation dynamics. Preliminary results suggest that water recycling is a key factor in extending convective precipitation during several days, and that the total new water added in the area as a whole is only a fraction of the total measured rainfall. An estimation of this fraction is very important to better understanding the water budget and for hydrological planning in this water-stressed region.

Sensory and consumer evaluation of pork loins from crossbreeds between Danish Landrace, Yorkshire, Duroc, Iberian and Mangalitza.

PubMed

Straadt, Ida K; Aaslyng, Margit D; Bertram, Hanne Christine

2013-09-01

Iberian (I) and Mangalitza (M) boars were crossed with Duroc (D) and Landrace/Yorkshire (LY) sows and compared with the traditional crossbreed DLY. The sensory attributes were analysed, and consumers evaluated the fried loins. Gas chromatography (GC) aroma analysis was performed on the fried meat, and fatty acid composition was determined on the loin and the subcutaneous fat, respectively. No marked differences were found in odour, appearance or flavour/taste between the alternative crossbreeds and DLY; however, the alternative crossbreeds had improved textural properties. Consumer evaluation revealed that the alternative crossbreeds obtained positive associations compared with DLY, and MD was ranked best or second best by almost 60% of the consumers. No pronounced differences were found in the aroma compounds between the different crossbreeds. Correlations were found between the fatty acid composition and sensory attributes. In conclusion, by crossing the alternative breeds Iberian and Mangalitza with traditional Danish pig breeds it is possible to produce pork with attractive sensory attributes. Copyright © 2013 Elsevier Ltd. All rights reserved.

Authentication of fattening diet of Iberian pigs according to their volatile compounds profile from raw subcutaneous fat.

PubMed

Narváez-Rivas, M; Pablos, F; Jurado, J M; León-Camacho, M

2011-02-01

The composition of volatile components of subcutaneous fat from Iberian pig has been studied. Purge and trap gas chromatography-mass spectrometry has been used. The composition of the volatile fraction of subcutaneous fat has been used for authentication purposes of different types of Iberian pig fat. Three types of this product have been considered, montanera, extensive cebo and intensive cebo. With classification purposes, several pattern recognition techniques have been applied. In order to find out possible tendencies in the sample distribution as well as the discriminant power of the variables, principal component analysis was applied as visualisation technique. Linear discriminant analysis (LDA) and soft independent modelling by class analogy (SIMCA) were used to obtain suitable classification models. LDA and SIMCA allowed the differentiation of three fattening diets by using the contents in 2,2,4,6,6-pentamethyl-heptane, m-xylene, 2,4-dimethyl-heptane, 6-methyl-tridecane, 1-methoxy-2-propanol, isopropyl alcohol, o-xylene, 3-ethyl-2,2-dimethyl-oxirane, 2,6-dimethyl-undecane, 3-methyl-3-pentanol and limonene.

Phylogenetic Analysis Shows That Neolithic Slate Plaques from the Southwestern Iberian Peninsula Are Not Genealogical Recording Systems

PubMed Central

García Rivero, Daniel; O'Brien, Michael J.

2014-01-01

Prehistoric material culture proposed to be symbolic in nature has been the object of considerable archaeological work from diverse theoretical perspectives, yet rarely are methodological tools used to test the interpretations. The lack of testing is often justified by invoking the opinion that the slippery nature of past human symbolism cannot easily be tackled by the scientific method. One such case, from the southwestern Iberian Peninsula, involves engraved stone plaques from megalithic funerary monuments dating ca. 3,500–2,750 B.C. (calibrated age). One widely accepted proposal is that the plaques are ancient mnemonic devices that record genealogies. The analysis reported here demonstrates that this is not the case, even when the most supportive data and techniques are used. Rather, we suspect there was a common ideological background to the use of plaques that overlay the southwestern Iberian Peninsula, with little or no geographic patterning. This would entail a cultural system in which plaque design was based on a fundamental core idea, with a number of mutable and variable elements surrounding it. PMID:24558384

Palaeoenvironments of the last Neanderthals in SW Europe (MIS 3): Cova del Coll Verdaguer (Barcelona, NE of Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Daura, J.; Sanz, M.; Allué, E.; Vaquero, M.; López-García, J. M.; Sánchez-Marco, A.; Domènech, R.; Martinell, J.; Carrión, J. S.; Ortiz, J. E.; Torres, T.; Arnold, L. J.; Benson, A.; Hoffmann, D. L.; Skinner, A. R.; Julià, R.

2017-12-01

Marine isotope stage 3 (MIS 3) was characterised by marked oscillations of extreme cold episodes with very short warm events during the stadial, and several regional differences have been recorded in the ice cores and marine deposits. The aim of this study is to reconstruct this period by evaluating both terrestrial and regional responses. Cova del Coll Verdaguer, a site located on the Iberian Peninsula, preserves a sedimentary deposit dated to between 34 and 56 ka BP and provides an opportunity for evaluating the impact of climate changes on the regional landmass during a period that coincided with the last Neanderthal population on the Iberian Peninsula. Several dating methods, including U-series, electron spin resonance, amino acid racemization and radiocarbon (14C), were applied to the site and the ages obtained show good agreement. The biotic evidence obtained is substantial, comprising floristic data from palynology and charcoal analysis, and faunal data from large and small mammals, birds and gastropods. Environmental reconstruction points to an initially open meadow landscape at the base of the sequence (∼56 ka) that progressively changes to a woodland environment dominated by conifers (∼34 ka). The presence of few thermophilous taxa, in contrast with lower latitudes of the Iberian Peninsula, is also detected. The environmental conditions of mid-altitude, Mediterranean, limestone mountains for the last Neanderthal populations appear to have been dominated by a forested landscape comprising boreal or mixed coniferous forest, characterised by a low usable biomass with poor comestible plant resources and dispersed herbivore populations.

Volatile hydrocarbon profile of Iberian dry-cured hams. A possible tool for authentication of hams according to the fattening diet.

PubMed

Narváez-Rivas, Mónica; Vicario, Isabel M; Alcalde, M Jesús; León-Camacho, Manuel

2010-06-15

The aims of this work were to carry out a comprehensive study of the volatile hydrocarbons of 34 Iberian dry-cured hams and to evaluate the efficiency of these compounds for discriminating hams according to the fattening system: "Montanera" (B) and "Cebo" (C). The samples of hams were obtained by mincing the semimembranosus and semitendinosus muscles from slices of dry-cured ham. The analyses were carried out by gas chromatography-mass spectrometry with a polar capillary column and after a previous extraction by Purge and Trap method. Forty-three volatile hydrocarbons were identified, 26 of them for the first time in Iberian dry-cured ham. Only five compounds showed significant differences between the two types of hams. Among the 33 volatile hydrocarbons, 22 of them allowed a complete discrimination of the two groups of hams according the fattening system.

Assessing extreme droughts in the Iberian Peninsula during 1750-1850 from rogation ceremonies

NASA Astrophysics Data System (ADS)

Domínguez-Castro, F.; Ribera, P.; García-Herrera, R.; Vaquero, J. M.; Barriendos, M.; Cuadrat, J. M.; Moreno, J. M.

2011-11-01

Among the different meteorological risks, droughts are the ones with the highest socio-economical impact in the Iberian Peninsula. Drought events have been largely studied in the instrumental period, but very little is known about the characteristics of droughts in the preinstrumental period. In this work, new series of rogation ceremonies identify severe droughts within the period 1750-1850. The overlapping of the rogation series with some instrumental series served to identify some climatic characteristics of rogation ceremonies: a) during spring, rainfall deficits needed to celebrate rogation ceremonies are smaller than in any other season; b) when the number of location celebrating rogations increases in a region the hydrological deficit on each location increases as well. On the other hand, it was found that the periods 1750-1754 and 1779-1783 are probably the driest periods of the 101 analyzed years. Both show an important number of rogations all over the Iberian Peninsula and during all the seasons. The most extended drought of this period occurred during the spring of 1817, affecting 15 of the 16 locations studied. This drought was influenced by the Tambora eruption (1815). The study of the climate footprint of this eruption and its comparison with similar situations in the series suggest that the spring drought of 1824 may be associated with the eruptions of the Galunggung and Usu volcanoes (1822). Further studies are required to confirm this fact and understand the atmospheric mechanisms involved.

East Atlantic (EA) and North Atlantic Oscillation (NAO) interplay over the Iberian Peninsula for the last two millennia

NASA Astrophysics Data System (ADS)

Hernandez, A.; Sánchez-López, G.; Pla-Rabes, S.; Trigo, R.; Toro, M.; Granados, I.; Sáez, A.; Masque, P.; Pueyo, J. J.; Rubio-Inglés, M. J.; Giralt, S.

2016-12-01

The multi-proxy approach from sediments of an Iberian alpine lake allowed us to establish the climatic conditions in the Iberian Central Range (ICR) over the last two millennia. The comparison with other Iberian reconstructions permitted to identify possible forcing climate mechanisms. Climatic conditions would be transmitted to the sediments via the frequency of intense run-off events, derived from rain-on-snow events, and the lake productivity, ruled by ice-cover duration. The early Roman Period (RP; 200 BC - 350 AD) in the ICR was characterized by oscillations of intense run-off events, as a consequence of an alternation between cold and warm periods. From the second half of the RP to the onset of the Early Middle Ages (EMA; 350 - 500 AD) an increase in the intense run-off events suggests warm conditions, although a noticeable decrease during the rest of the EMA (500 - 900 AD) evidences a shift to very cold temperatures in this region. In terms of humidity, both RP and EMA climatic periods displayed a transition from a dry to a wet scenario that led to a decrease in lake productivity. These climatic conditions have been registered by other reconstructions in the Iberian Peninsula (IP), and a North-South humidity gradient could be envisaged, although spatial climatic discrepancies were significant. Precipitation and temperature in the IP present a more homogeneous spatial pattern when the NAO and EA modes have the same sign than when they have the opposite sign. Hence, a predominance of periods with NAO - EA in opposite phases could explain the climatic spatial heterogeneity in the IP during these two periods. The Medieval Climate Anomaly (MCA; 900 - 1300 AD) in the ICR was characterized by warm and dry conditions represented by an increase in exceptional run-off episodes and lake productivity whereas the Little Ice Age (LIA; 1300 - 1850 AD) showed the opposite scenario. Similar climatic conditions were registered in all the IP, reflecting a spatial climatic

Histomorphometric, fractal and lacunarity comparative analysis of sheep (Ovis aries), goat (Capra hircus) and roe deer (Capreolus capreolus) compact bone samples.

PubMed

Gudea, A I; Stefan, A C

2013-08-01

Quantitative and qualitative studies dealing with histomorphometry of the bone tissue play a new role in modern legal medicine/forensic medicine and archaeozoology nowadays. This study deals with the differences found in case of humerus and metapodial bones of recent sheep (Ovis aries), goat (Capra hircus) and roedeer (Capreolus capreolus) specimens, both from a qualitative point of view, but mainly from a quantitative perspective. A novel perspective given by the fractal analysis performed on the digital histological images is approached. This study shows that the qualitative assessment may not be a reliable one due to the close resemblance of the structures. From the quantitative perspective (several measurements performed on osteonal units and statistical processing of data),some of the elements measured show significant differences among 3 species(the primary osteonal diameter, etc.). The fractal analysis and the lacunarity of the images show a great deal of potential, proving that this type of analysis can be of great help in the separation of the material from this perspective.

Shared Bacterial and Viral Respiratory Agents in Bighorn Sheep (Ovis canadensis), Domestic Sheep (Ovis aries), and Goats (Capra hircus) in Montana

PubMed Central

Miller, David S.; Weiser, Glen C.; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J.; Keating, Kim A.; Chapman, Phillip L.; Kimberling, Cleon; Rhyan, Jack; Clarke, P. Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents. PMID:22195293

Shared Bacterial and Viral Respiratory Agents in Bighorn Sheep (Ovis canadensis), Domestic Sheep (Ovis aries), and Goats (Capra hircus) in Montana.

PubMed

Miller, David S; Weiser, Glen C; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J; Keating, Kim A; Chapman, Phillip L; Kimberling, Cleon; Rhyan, Jack; Clarke, P Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents.

Shared bacterial and viral respiratory agents in bighorn sheep (Ovis canadensis), domestic sheep (Ovis aries), and goats (Capra hircus) in Montana

USGS Publications Warehouse

Miller, David S.; Weiser, Glen C.; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J.; Keating, Kim A.; Chapman, Phillip L.; Kimberling, Cleon; Rhyan, Jack C.; Clarke, P. Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents.

MAAG Job Position: Rolebooks and Technical Vocabulary (Iberian Spanish). Methods for Determining Language Objectives and Criteria, Volume VII.

ERIC Educational Resources Information Center

Setzler, Hubert H., Jr.; And Others

Rolebooks and technical Iberian Spanish vocabulary for the job position of military advisory and assistance group (MAAG) officer of the Air Force are presented. The materials are part of the communication/language objectives-based system (C/LOBS), which supports the front-end analysis efforts of the Defense Language Institute Foreign Language…

First record of Hermetia illucens (Diptera: Stratiomyidae) on human corpses in Iberian Peninsula.

PubMed

Martínez-Sánchez, Anabel; Magaña, Concepción; Saloña, Marta; Rojo, Santos

2011-03-20

This article presents the first record of Hermetia illucens larvae on a human corpse in Spain (the second case report in Europe). Prepupae of H. illucens, and other insects, were recovered from the dead body of a 72-year-old man in an advanced stage of decomposition. The body was located in Reus (NE Spain), in October 1998. This article provides additional biological data on experimental studies and an update on the geographic distribution of this species in the Iberian Peninsula. Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

Long-Term Assessment of Wild Boar Harvesting and Cattle Removal for Bovine Tuberculosis Control in Free Ranging Populations

PubMed Central

Mentaberre, Gregorio; Romero, Beatriz; de Juan, Lucía; Navarro-González, Nora; Velarde, Roser; Mateos, Ana; Marco, Ignasi; Olivé-Boix, Xavier; Domínguez, Lucas; Lavín, Santiago; Serrano, Emmanuel

2014-01-01

Wild boar is a recognized reservoir of bovine tuberculosis (TB) in the Mediterranean ecosystems, but information is scarce outside of hotspots in southern Spain. We describe the first high-prevalence focus of TB in a non-managed wild boar population in northern Spain and the result of eight years of TB management. Measures implemented for disease control included the control of the local wild boar population through culling and stamping out of a sympatric infected cattle herd. Post-mortem inspection for detection of tuberculosis-like lesions as well as cultures from selected head and cervical lymph nodes was done in 745 wild boar, 355 Iberian ibexes and five cattle between 2004 and 2012. The seasonal prevalence of TB reached 70% amongst adult wild boar and ten different spoligotypes and 13 MIRU-VNTR profiles were detected, although more than half of the isolates were included in the same clonal complex. Only 11% of infected boars had generalized lesions. None of the ibexes were affected, supporting their irrelevance in the epidemiology of TB. An infected cattle herd grazed the zone where 168 of the 197 infected boars were harvested. Cattle removal and wild boar culling together contributed to a decrease in TB prevalence. The need for holistic, sustained over time, intensive and adapted TB control strategies taking into account the multi-host nature of the disease is highlighted. The potential risk for tuberculosis emergence in wildlife scenarios where the risk is assumed to be low should be addressed. PMID:24558435

Transport of Helium Pickup Ions within the Focusing Cone: Reconciling STEREO Observations with IBEX

NASA Astrophysics Data System (ADS)

Quinn, P. R.; Schwadron, N. A.; Möbius, E.

2016-06-01

Recent observations of the pickup helium focusing cone by STEREO/Plasma and Suprathermal Ion Composition indicate an inflow longitude of the interstellar wind that differs from the observations of IBEX by 1\\buildrel{\\circ}\\over{.} 8+/- 2\\buildrel{\\circ}\\over{.} 4. It has been under debate whether the transport of helium pickup ions with an anisotropic velocity distribution is the cause of this difference. If so, the roughly field-aligned pickup ion streaming relative to the solar wind should create a shift in the pickup ion density relative to the focusing cone. A large pickup ion streaming depends on the size of the mean free path. Therefore, the observed longitudinal shift in the pickup ion density relative to the neutral focusing cone may carry fundamental information about the mean free path experienced by pickup ions inside 1 au. We test this hypothesis using the Energetic Particle Radiation Environment Module (EPREM) model by simulating the transport of helium pickup ions within the focusing cone finding a mean free path of {λ }\\parallel =0.19+0.29(-0.19) au. We calculate the average azimuthal velocity of pickup ions and find that the anisotropic distribution reaches ˜8% of the solar wind speed. Lastly, we isolate transport effects within EPREM, finding that pitch-angle scattering, adiabatic focusing, perpendicular diffusion, and particle drift contribute to shifting the focusing cone 20.00%, 69.43%, 10.56%, and \\lt 0.01 % , respectively. Thus we show with the EPREM model that the transport of pickup ions does indeed shift the peak of the focusing cone relative to the progenitor neutral atoms and this shift provides fundamental information on the scattering of pickup ions inside 1 au.

Spatial Distribution of Dorylaimid and Mononchid Nematodes from Southeast Iberian Peninsula: Chorological Relationships among Species

PubMed Central

Liébanas, G.; Peña-Santiago, R.; Real, R.; Márquez, A. L.

2002-01-01

The spatial distribution of 138 Dorylaimid and Mononchid species collected in a natural area from the Southeast Iberian Peninsula was studied. A chorological classification was used to examine distribution patterns shared by groups of species. Eighty species were classified into 14 collective and 16 individual chorotypes. The geographical projections of several collective chorotypes are illustrated along with their corresponding distribution maps. The importance of this analysis to nematological study is briefly discussed. PMID:19265962

Inclusion of seminal plasma in sperm cryopreservation of Iberian pig.

PubMed

Gómez-Fernández, José; Gómez-Izquierdo, Emilio; Tomás, Cristina; González-Bulnes, Antonio; Sánchez-Sánchez, Raúl; de Mercado, Eduardo

2012-01-01

The aim of the present study was to evaluate the inclusion of seminal plasma (SP) in the freezing extender, trying to preserve as much as possible of SP with spermatozoa from Iberian pigs, thus improving the conservation of animal genetic resources of this breed. Experiment 1, evaluated the effect of substituting water with SP as diluent in the freezing media in different proportions (0%, 10%, 25%, 50%, 75% and 100%), over pre-freezing (at 10°C and 5°C) and post-thawing sperm quality. The results showed that over 50% of SP in the extender, significantly decreased sperm quality in comparison to the control sample (0% SP) and the samples with 10% and 25% of SP (P<0.05). No significant differences were found between the control sample and the samples with 10% and 25% SP (P>0.05), but treatment with 25% did not show significant differences between the time of incubation at 37°C after thawing (P>0.05), showing greater sperm quality resistance over time. Experiment 2, evaluated the effect of prolonged incubation period, until 480min (simulating the lifespan of sperm in the female genital tract), of sperm samples with 0%, 10% and 25% of SP. Treatment with 25% of SP maintained better sperm quality over time, compared to control sample. Significant differences were observed especially in the parameters of motility analysis (TMS, total motile spermatozoa; PMS: progressive motility spermatozoa. P<0.05). In Experiment 3, the effect of the presence of SP was evaluated during the thawing process. Although some differences were observed between treatments, these differences were not as clear as the previous experiments. In conclusion, replacement of 25% of the water by SP as diluent in the freezing extender could be considered the maximum percentage of inclusion, without harmful effects to the sperm. In addition, this proportion of SP maintained Iberian sperm quality for longer time when it was present during the freezing and thawing process. Copyright © 2012 Elsevier B

Energy-environmental benefits and economic feasibility of anaerobic codigestion of Iberian pig slaughterhouse and tomato industry wastes in Extremadura (Spain).

PubMed

González-González, A; Cuadros, F; Ruiz-Celma, A; López-Rodríguez, F

2013-05-01

Anaerobic digestion of Iberian pig slaughterhouse and tomato industry wastes, as well as codigestion operations from such residues, are reported to achieve 54-80% reduction in Chemical Oxygen Demand and 6-19 N m(3)/m(3) substrate methane production. Furthermore, 0.79-0.88 m(3)water/m(3) substrate is seen to be recovered after the above mentioned operations, which might be used as irrigation water, and 0.12-0.21 m(3)agricultural amendment/m(3) substrate with 91-98% moisture content. The present paper also reports on the economic feasibility of both an anaerobic codigestion plant operating with 60% slaughterhouse wastes/40% tomato industry wastes (optimal ratio obtained in previous laboratory-scaled experiments), and an anaerobic digestion plant for Iberian pig slaughterhouse waste. Payback times are reported as 14.86 and 3.73 years, respectively. Copyright © 2013 Elsevier Ltd. All rights reserved.

Precipitation extremes in the Iberian Peninsula: an overview of the CLIPE project

NASA Astrophysics Data System (ADS)

Santos, João A.; Gonçalves, Paulo M.; Rodrigues, Tiago; Carvalho, Maria J.; Rocha, Alfredo

2014-05-01

The main aims of the project "Climate change of precipitation extreme episodes in the Iberian Peninsula and its forcing mechanisms - CLIPE" are 1) to diagnose the climate change signal in the precipitation extremes over the Iberian Peninsula (IP) and 2) to identify the underlying physical mechanisms. For the first purpose, a multi-model ensemble of 25 Regional Climate Model (RCM) simulations, from the ENSEMBLES project, is used. These experiments were generated by 15 RCMs, driven by five General Circulation Models (GCMs) under both historic conditions (1951-2000) and SRES A1B scenario (2001-2100). In this project, daily precipitation and mean sea level pressure, for the periods 1961-1990 (recent past) and 2021-2100 (future), are used. Using the Standardised Precipitation Index (SPI) on a daily basis, a precipitation extreme is defined by the pair of threshold values (Dmin, Imin), where Dmin is the minimum number of consecutive days with daily SPI above the Imin value. For both past and future climates, a precipitation extreme of a specific type is then characterised by two variables: the number of episodes with a specific duration in days and the number of episodes with a specific mean intensity (SPI/duration). Climate change is also assessed by changes in their Probability Density Functions (PDFs), estimated at sectors representative of different precipitation regimes. Lastly, for the second objective of this project, links between precipitation and Circulation Weather Regimes (CWRs) are explored for both past and future climates. Acknowledgments: this work is supported by European Union Funds (FEDER/COMPETE - Operational Competitiveness Programme) and by national funds (FCT - Portuguese Foundation for Science and Technology) under the project CLIPE (PTDC/AAC-CLI/111733/2009).

Patterns of acoustic variation in Cicada barbara Stål (Hemiptera, Cicadoidea) from the Iberian Peninsula and Morocco.

PubMed

Pinto-Juma, G A; Seabra, S G; Quartau, J A

2008-02-01

Field recordings of the calling song and of an amplitude modulated signal produced by males of Cicada barbara from North Africa and the Iberian Peninsula were analysed in order to assess the geographical acoustic variation and the potential usefulness of acoustic data in the discrimination of subspecies and populations. Sound recordings were digitized and the frequency and temporal properties of the calls of each cicada were analysed. In all regions studied, peak frequency, quartiles 25, 50 and 75% and syllable rate showed low coefficients of variation suggesting inherent static properties. All frequency variables were correlated with the latitude, decreasing from south to north. In addition, most acoustic variables of the calling song showed significant differences between regions, and PCA and DFA analyses supported a partitioning within this species between Iberian Peninsula+Ceuta and Morocco, corroborating mtDNA data on the same species. Therefore, the subspecific division of C. barbara into C. barbara barbara from Morocco and C. barbara lusitanica from Portugal, Spain and Ceuta finds support from the present acoustic analyses, a result which is also reinforced by molecular markers.

Linking evolutionary lineage with parasite and pathogen prevalence in the Iberian honey bee.

PubMed

Jara, Laura; Cepero, Almudena; Garrido-Bailón, Encarna; Martín-Hernández, Raquel; Higes, Mariano; De la Rúa, Pilar

2012-05-01

The recent decline in honey bee colonies observed in both European countries and worldwide is of great interest and concern, although the underlying causes remain poorly understood. In recent years, growing evidence has implicated parasites and pathogens in this decline of both the vitality and number of honey bee colonies. The Iberian Peninsula provides an interesting environment in which to study the occurrence of pathogens and parasites in the host honey bee populations due to the presence of two evolutionary lineages in A. m. iberiensis (Western European [M] or African [A]). Here, we provide the first evidence linking the population structure of the Iberian honey bee with the prevalence of some of its most important parasites and pathogens: the Varroa destructor mite and the microsporidia Nosema apis and Nosema ceranae. Using data collected in two surveys conducted in 2006 and 2010 in 41 Spanish provinces, the evolutionary lineage and the presence of the three parasitic organisms cited above were analyzed in a total of 228 colonies. In 2006 N. apis was found in a significantly higher proportion of M lineage honey bees than in the A lineage. However, in 2010 this situation had changed significantly due to a higher prevalence of N. ceranae. We observed no significant relationships in either year between the distributions of V. destructor or N. ceranae and the evolutionary lineage present in A. m. iberiensis colonies, but the effects of these organisms on the genetic diversity of the honey bee populations need further research. Copyright © 2012 Elsevier Inc. All rights reserved.

Magnetotelluric Imaging of the Lithosphere Across the Variscan Orogen (Iberian Autochthonous Domain, NW Iberia)

NASA Astrophysics Data System (ADS)

Alves Ribeiro, J.; Monteiro-Santos, F. A.; Pereira, M. F.; Díez Fernández, R.; Dias da Silva, Í.; Nascimento, C.; Silva, J. B.

2017-12-01

A new magnetotelluric (MT) survey comprising 17 MT soundings throughout a 30 km long N30°W transect in the Iberian autochthons domain of NW Iberia (Central Iberian Zone) is presented. The 2-D inversion model shows the resistivity structure of the continental crust up to 10 km depth, heretofore unavailable for this region of the Variscan Orogen. The MT model reveals a wavy structure separating a conductive upper layer underlain by a resistive layer, thus picturing the two main tectonic blocks of a large-scale D2 extensional shear zone (i.e., Pinhel shear zone). The upper layer represents a lower grade metamorphic domain that includes graphite-rich rocks. The lower layer consists of high-grade metamorphic rocks that experienced partial melting and are associated with granites (more resistive) emplaced during crustal thinning. The wavy structure is the result of superimposed crustal shortening responsible for the development of large-scale D3 folds (e.g., Marofa synform), later deflected and refolded by a D4 strike-slip shear zone (i.e., Juzbado-Penalva do Castelo shear zone). The later contribution to the final structure of the crust is marked by the intrusion of postkinematic granitic rocks and the propagation of steeply dipping brittle fault zones. Our study demonstrates that MT imaging is a powerful tool to understand complex crustal structures of ancient orogens in order to design future prospecting surveys for mineral deposits of economic interest.

Groundwater influence on soil moisture memory and land-atmosphere interactions over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Martinez-de la Torre, Alberto; Miguez-Macho, Gonzalo

2017-04-01

We investigate the memory introduced in soil moisture fields by groundwater long timescales of variation in the semi-arid regions of the Iberian Peninsula with the LEAFHYDRO soil-vegetation-hydrology model, which includes a dynamic water table fully coupled to soil moisture and river flow via 2-way fluxes. We select a 10-year period (1989-1998) with transitions from wet to dry to again wet long lasting conditions and we carry out simulations at 2.5 km spatial resolution forced by ERA-Interim and a high-resolution precipitation analysis over Spain and Portugal. The model produces a realistic water table that we validate with hundreds of water table depth observation time series (ranging from 4 to 10 years) over the Iberian Peninsula. Modeled river flow is also compared to observations. Over shallow water table regions, results highlight the groundwater buffering effect on soil moisture fields over dry spells and long-term droughts, as well as the slow recovery of pre-drought soil wetness once climatic conditions turn wetter. Groundwater sustains river flow during dry summer periods. The longer lasting wet conditions in the soil when groundwater is considered increase summer evapotranspiration, that is mostly water-limited. Our results suggest that groundwater interaction with soil moisture should be considered for climate seasonal forecasting and climate studies in general over water-limited regions where shallow water tables are significantly present and connected to land surface hydrology.

KSC-08pd2418

NASA Image and Video Library

2008-08-05

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, the Star-27 kick motor and nozzle for NASA's Interstellar Boundary Explorer, or IBEX, spacecraft are “on top” and part of the IBEX flight system, known as the adapter cone, is in the foreground/bottom. The Star-27 motor has a silver tank that contains the solid propellant. The nozzle fits down inside the adapter cone. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA/R. Bledsoe

High resolution reconstruction of monthly autumn and winter precipitation of Iberian Peninsula for last 150 years.

NASA Astrophysics Data System (ADS)

Cortesi, N.; Trigo, R.; González-Hidalgo, J. C.; Ramos, A.

2012-04-01

Precipitation over Iberian Peninsula (IP) presents large values of interannual variability and large spatial contrasts between wet mountainous regions in the north and dry regions in the southern plains. Unlike other European regions, IP was poorly monitored for precipitation during 19th century. Here we present a new approach to fill this gap. A set of 26 atmospheric circulation weather types (Trigo R.M. and DaCamara C.C., 2000) derived from a recent SLP dataset, the EMULATE (European and North Atlantic daily to multidecadal climate variability) Project, was used to reconstruct Iberian monthly precipitation from October to March during 1851-1947. Principal Component Regression Analysis was chosen to develop monthly precipitation reconstruction back to 1851 and calibrated over 1948-2003 period for 3030 monthly precipitation series of high-density homogenized MOPREDAS (Monthly Precipitation Database for Spain and Portugal) database. Validation was conducted over 1920-1947 at 15 key site locations. Results show high model performance for selected months, with a mean coefficient of variation (CV) around 0.6 during validation period. Lower CV values were achieved in western area of IP. Trigo, R. M., and DaCamara, C.C., 2000: "Circulation weather types and their impact on the precipitation regime in Portugal". Int. J. Climatol., 20, 1559-1581.

KSC-08pd2410

NASA Image and Video Library

2008-07-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, technicians follow the movement of NASA's Interstellar Boundary Explorer, or IBEX, mission spacecraft toward the mobile stand in the foreground. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA

KSC-08pd2409

NASA Image and Video Library

2008-07-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, technicians prepare a mobile stand to receive NASA's Interstellar Boundary Explorer, or IBEX, mission spacecraft. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA

Density-Dependent Spacing Behaviour and Activity Budget in Pregnant, Domestic Goats (Capra hircus).

PubMed

Vas, Judit; Andersen, Inger Lise

2015-01-01

Very little is known about the spacing behaviour in social groups of domestic goats (Capra hircus) in the farm environment. In this experiment, we studied interindividual distances, movement patterns and activity budgets in pregnant goats housed at three different densities. Norwegian dairy goats were kept in stable social groups of six animals throughout pregnancy at 1, 2 or 3 m2 per individual and their spacing behaviours (i.e., distance travelled, nearest and furthest neighbour distance) and activity budgets (e.g., resting, feeding, social activities) were monitored. Observations were made in the first, second and last thirds of pregnancy in the mornings, at noon and in the afternoons of each of these phases (4.5 hours per observation period). The findings show that goats held at animal densities of 2 and 3 m2 moved longer distances when they had more space per animal and kept larger nearest and furthest neighbour distances when compared to the 1 m2 per animal density. Less feeding activity was observed at the high animal density compared to the medium and low density treatments. The phase of gestation also had an impact on almost all behavioural variables. Closer to parturition, animals moved further distances and the increase in nearest and furthest neighbour distance was more pronounced at the lower animal densities. During the last period of gestation, goats spent less time feeding and more on resting, social behaviours and engaging in other various activities. Our data suggest that more space per goat is needed for goats closer to parturition than in the early gestation phase. We concluded that in goats spacing behaviour is density-dependent and changes with stages of pregnancy and activities. Finally, the lower density allowed animals to express individual preferences regarding spacing behaviour which is important in ensuring good welfare in a farming situation.

Density-Dependent Spacing Behaviour and Activity Budget in Pregnant, Domestic Goats (Capra hircus)

PubMed Central

Vas, Judit; Andersen, Inger Lise

2015-01-01

Very little is known about the spacing behaviour in social groups of domestic goats (Capra hircus) in the farm environment. In this experiment, we studied interindividual distances, movement patterns and activity budgets in pregnant goats housed at three different densities. Norwegian dairy goats were kept in stable social groups of six animals throughout pregnancy at 1, 2 or 3 m2 per individual and their spacing behaviours (i.e. distance travelled, nearest and furthest neighbour distance) and activity budgets (e.g. resting, feeding, social activities) were monitored. Observations were made in the first, second and last thirds of pregnancy in the mornings, at noon and in the afternoons of each of these phases (4.5 hours per observation period). The findings show that goats held at animal densities of 2 and 3 m2 moved longer distances when they had more space per animal and kept larger nearest and furthest neighbour distances when compared to the 1 m2 per animal density. Less feeding activity was observed at the high animal density compared to the medium and low density treatments. The phase of gestation also had an impact on almost all behavioural variables. Closer to parturition, animals moved further distances and the increase in nearest and furthest neighbour distance was more pronounced at the lower animal densities. During the last period of gestation, goats spent less time feeding and more on resting, social behaviours and engaging in other various activities. Our data suggest that more space per goat is needed for goats closer to parturition than in the early gestation phase. We concluded that in goats spacing behaviour is density-dependent and changes with stages of pregnancy and activities. Finally, the lower density allowed animals to express individual preferences regarding spacing behaviour which is important in ensuring good welfare in a farming situation. PMID:26657240

Paraglacial dynamics in Little Ice Age glaciated environments in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Oliva, Marc; Serrano, Enrique; Ruiz-Fernández, Jesús; Gómez-Ortiz, Antonio; Palacios, David

2017-04-01

Three Iberian mountain ranges encompassed glaciers during the Little Ice Age (LIA): the Pyrenees, Cantabrian Mountains and Sierra Nevada. The gradual warming trend initiated during the second half of the XIX century promoted the progressive shrinking of these glaciers, which completely melted during the first half of the 20th century in the Cantabrian Mountains and Sierra Nevada and reduced by 80% of their LIA extent in the Pyrenees. Currently, the formerly glaciated environments are located within the periglacial belt and still present to a major or lesser degree signs of paraglacial activity. LIA moraines are devoid of vegetation and composed of highly unstable sediments that are being intensely mobilized by slope processes. Inside the moraines, different landforms and processes generated following LIA glacial retreat have generated: (i) buried ice trapped within rock debris supplied from the cirque walls, which has also generated rock glaciers and protalus lobes; (ii) semi-permanent snow fields distributed above the ice-patches remnants of the LIA glaciers, and (iii) small periglacial features such as frost mounds, sorted circles and solifluction landforms generated by processes such as solifluction and cryoturbation. Present-day morphodynamics is mostly related to seasonal frost conditions, though patches of permafrost have formed in some areas in contact with the buried ice. This 'geomorphic permafrost' is undergoing a process of degradation since it is not balanced with present-day climate conditions. This is reflected in the occurrence of multiple collapses and subsidences of the debris cover where the frozen bodies sit. In the highest areas of the Pyrenees there is a permafrost belt next to the small glaciated environments in the highest massifs. Finally, we propose a model for paraglacial activity in Iberian mountain ranges and compare it to other mid-latitude mountain environments as well as to other past deglaciation stages.

North Atlantic Oscillation and moisture transport towards the Iberian Peninsula during winter

NASA Astrophysics Data System (ADS)

Ordóñez, Paulina; Liberato, Margarida L. R.; Gouveia, Célia; Trigo, Ricardo M.

2013-04-01

The North Atlantic Oscillation (NAO) is the major source of interannual variability in winter precipitation over the Iberian Peninsula (IP). Recent works have identified the most important sources of moisture that supply the IP during different seasons of the year, including the nearby western Mediterranean and the tropical-subtropical North Atlantic corridor that extends from the Gulf of Mexico to the IP, and the IP itself (Gimeno et al., 2010). However, although rainfall is directly related to the moisture supply, the relationship between the water vapor transported towards IP and the NAO phase remains unclear. In this work the moisture transport towards IP was analyzed using a Lagrangian diagnosis method, which relies on the Lagrangian particle dispersion model FLEXPART. This methodology computes budgets of evaporation minus precipitation (E-P) by evaluating changes in the specific humidity along back-trajectories. Here we have computed (for each day) the evolution of moisture of the particles bound for Iberia up to 10 days prior to their arrival. The analysis was constrained to the winter (DJF) season, responsible for the largest fraction of precipitation, for the 20 years of ECMWF Reanalyses ERA40 dataset from 1980 to 2000. The contribution of the NAO phase on the water budgets is examined using composites of the obtained (E - P) fields for the 5 most extreme positive and negative NAO years of the study period. Results confirm that the IP is dominated by positive (negative) E-P anomalies during positive (negative) NAO phase. Additionally an anomalous water vapor sink (source) region located approximately over the Gulf Stream is found during positive (negative) NAO phase. Gimeno L., Nieto R., Trigo R.M. , Vicente-Serrano S.M, Lopes-Moreno J.I., (2010) "Where does the Iberian Peninsula moisture come from? An answer based on a Lagrangian approach". J. Hydrometeorology, 11, 421-436 DOI: 10.1175/2009JHM1182.1.

2nd Iberian Nuclear Astrophysics Meeting on Compact Stars

NASA Astrophysics Data System (ADS)

Perez-Garcia, M. Angeles; Pons, Jose; Albertus, C.

2012-02-01

ORGANIZING COMMITTEE Dr M Ángeles Pérez-García (Área Física Teórica-Universidad de Salamanca & IUFFYM) Dr J A Miralles (Universidad de Alicante) Dr J Pons (Universidad de Alicante) Dr C Albertus (Área Física Nuclear-Universidad de Salamanca & IUFFYM) Dr F Atrio (Área Física Teórica-Universidad de Salamanca & IUFFYM) PREFACE The second Iberian Nuclear Astrophysics meeting was held at the University of Salamanca, Spain on 22-23 September 2011. This volume contains most of the presentations delivered at this international workshop. This meeting was the second in the series following the previous I Encuentro Ibérico de Compstar, held at the University of Coimbra, Portugal in 2010. The main purpose of this meeting was to strengthen the scientific collaboration between the participants of the Iberian and the rest of the southern European branches of the European Nuclear Astrophysics network, formerly, COMPSTAR. This ESF (European Science Foundation) supported network has been crucial in helping to make a broader audience for the the most interesting and relevant research lines being developed currently in Nuclear Astrophysics, especially related to the physics of neutron stars. It is indeed important to emphasize the need for a collaborative approach to the rest of the scientific communities so that we can reach possible new members in this interdisciplinary area and as outreach for the general public. The program of the meeting was tailored to theoretical descriptions of the physics of neutron stars although some input from experimental observers and other condensed matter and optics areas of interest was also included. The main scientific topics included: Magnetic fields in compact stars Nuclear structure and in-medium effects in nuclear interaction Equation of state: from nuclear matter to quarks Importance of crust in the evolution of neutron stars Computational simulations of collapsing dense objects Observational phenomenology In particular, leading

Feasibility of use of fatty acid and triacylglycerol profiles for the authentication of commercial labelling in Iberian dry-cured sausages.

PubMed

Horcada, Alberto; Fernández-Cabanás, Víctor M; Polvillo, Oliva; Botella, Baltasar; Cubiles, M Dolores; Pino, Rafael; Narváez-Rivas, Mónica; León-Camacho, Manuel; Acuña, Rafael Rodríguez

2013-12-15

In the present study, fatty acid and triacylglycerol profiles were used to evaluate the possibility of authenticating Iberian dry-cured sausages according to their label specifications. 42 Commercial brand 'chorizo' and 39 commercial brand 'salchichón' sausages from Iberian pigs were purchased. 36 Samples were labelled Bellota and 45 bore the generic Ibérico label. In the market, Bellota is considered to be a better class than the generic Ibérico since products with the Bellota label are manufactured with high quality fat obtained from extensively reared pigs fed on acorns and pasture. Analyses of fatty acids and triacylglycerols were carried out by gas chromatography and a flame ion detector. A CP-SIL 88 column (highly substituted cyanopropyl phase; 50 m × 0.25 mm i.d., 0.2 µm film thickness) (Varian, Palo Alto, USA) was used for fatty acid analysis and a fused silica capillary DB-17HT column (50% phenyl-50% methylpolysiloxane; 30 m × 0.25 mm i.d., 0.15 µm film thickness) was used for triacylglycerols. Twelve fatty acids and 16 triacylglycerols were identified. Various discriminant models (linear quadratic discriminant analyses, logistic regression and support vector machines) were trained to predict the sample class (Bellota or Ibérico). These models included fatty acids and triacylglycerols separately and combined fatty acid and triacylglycerol profiles. The number of correctly classified samples according to discriminant analyses can be considered low (lower than 65%). The greatest discriminant rate was obtained when triacylglycerol profiles were included in the model, whilst using a combination of fatty acid and triacylglycerol profiles did not improve the rate of correct assignation. The values that represent the reliability of prediction of the samples according to the label specification were higher for the Ibérico class than for the Bellota class. In fact, quadratic and Support Vector Machine discriminate analyses were not able to assign the

Australian validation of the Cancer of the Prostate Risk Assessment Post-Surgical score to predict biochemical recurrence after radical prostatectomy.

PubMed

Beckmann, Kerri; O'Callaghan, Michael; Vincent, Andrew; Roder, David; Millar, Jeremy; Evans, Sue; McNeil, John; Moretti, Kim

2018-03-01

The Cancer of the Prostate Risk Assessment Post-Surgical (CAPRA-S) score is a simple post-operative risk assessment tool predicting disease recurrence after radical prostatectomy, which is easily calculated using available clinical data. To be widely useful, risk tools require multiple external validations. We aimed to validate the CAPRA-S score in an Australian multi-institutional population, including private and public settings and reflecting community practice. The study population were all men on the South Australian Prostate Cancer Clinical Outcomes Collaborative Database with localized prostate cancer diagnosed during 1998-2013, who underwent radical prostatectomy without adjuvant therapy (n = 1664). Predictive performance was assessed via Kaplan-Meier and Cox proportional regression analyses, Harrell's Concordance index, calibration plots and decision curve analysis. Biochemical recurrence occurred in 342 (21%) cases. Five-year recurrence-free probabilities for CAPRA-S scores indicating low (0-2), intermediate (3-5) and high risk were 95, 79 and 46%, respectively. The hazard ratio for CAPRA-S score increments was 1.56 (95% confidence interval 1.49-1.64). The Concordance index for 5-year recurrence-free survival was 0.77. The calibration plot showed good correlation between predicted and observed recurrence-free survival across scores. Limitations include the retrospective nature and small numbers with higher CAPRA-S scores. The CAPRA-S score is an accurate predictor of recurrence after radical prostatectomy in our cohort, supporting its utility in the Australian setting. This simple tool can assist in post-surgical selection of patients who would benefit from adjuvant therapy while avoiding morbidity among those less likely to benefit. © 2017 Royal Australasian College of Surgeons.

Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis.

PubMed

Riojas, Marco A; McGough, Katya J; Rider-Riojas, Cristin J; Rastogi, Nalin; Hazbón, Manzour Hernando

2018-01-01

The species within the Mycobacterium tuberculosis Complex (MTBC) have undergone numerous taxonomic and nomenclatural changes, leaving the true structure of the MTBC in doubt. We used next-generation sequencing (NGS), digital DNA-DNA hybridization (dDDH), and average nucleotide identity (ANI) to investigate the relationship between these species. The type strains of Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii were sequenced via NGS. Pairwise dDDH and ANI comparisons between these, previously sequenced MTBC type strain genomes (including 'Mycobacterium canettii', 'Mycobacterium mungi' and 'Mycobacterium orygis') and M. tuberculosis H37Rv T were performed. Further, all available genome sequences in GenBank for species in or putatively in the MTBC were compared to H37Rv T . Pairwise results indicated that all of the type strains of the species are extremely closely related to each other (dDDH: 91.2-99.2 %, ANI: 99.21-99.92 %), greatly exceeding the respective species delineation thresholds, thus indicating that they belong to the same species. Results from the GenBank genomes indicate that all the strains examined are within the circumscription of H37Rv T (dDDH: 83.5-100 %). We, therefore, formally propose a union of the species of the MTBC as M. tuberculosis. M. africanum, M. bovis, M. caprae, M. microti and M. pinnipedii are reclassified as later heterotypic synonyms of M. tuberculosis. 'M. canettii', 'M. mungi', and 'M. orygis' are classified as strains of the species M. tuberculosis. We further recommend use of the infrasubspecific term 'variant' ('var.') and infrasubspecific designations that generally retain the historical nomenclature associated with the groups or otherwise convey such characteristics, e.g. M. tuberculosis var. bovis.

Mycoplasma conjunctivae in domestic small ruminants from high mountain habitats in Northern Spain.

PubMed

Fernández-Aguilar, Xavier; Cabezón, Oscar; Marco, Ignasi; Mentaberre, Gregorio; Frey, Joachim; Lavín, Santiago; López-Olvera, Jorge R

2013-12-13

Infectious keratoconjunctivitis (IKC) is a clinical condition affecting eyes of domestic and wild Caprinae worldwide, and Mycoplasma conjunctivae is considered the primary causative agent of IKC in sheep, goats and wild Caprinae. Domestic ruminants from high mountain habitats share grazing areas with wild mountain ungulates, such as chamois (Rupicapra spp.), Alpine ibex (Capra ibex) and European mouflon (Ovis aries musimon), and domestic sheep seem to act as M. conjunctivae reservoir. In this study, the presence of M. conjunctivae in domestic sheep and goats from the two main mountain ranges of Northern Spain, the Pyrenees and the Cantabrian Mountains, has been investigated. Eye swabs were obtained from 439 domestic small ruminants selected from flocks that seasonally graze in alpine meadows during three consecutive years (2011-2012-2013). Seventy-nine out of the 378 domestic sheep (20.9%) tested positive to a M. conjunctivae specific real time-PCR (rt-PCR) in at least one eye, whereas all the 61 sampled domestic goats were negative. Statistically significant higher prevalence and higher proportion of infected flocks (P < 0.001) was observed in the Pyrenees (25.7%; 12 flocks out of 13), where M. conjunctivae is widespread and probably endemic in domestic sheep, than in the Cantabrian Mountains (7.8%; one flock out of six). Twenty-five sheep (three from the Pyrenees and 22 from the Cantabrian Mountains) which showed clinical signs consistent with infectious keratoconjunctivitis (IKC) were negative by rt-PCR. In contrast, 62 out of the 71 (87.3%) M. conjunctivae-positive sheep from the Pyrenees and the eight positive sheep from the Cantabrian Mountains were asymptomatic. This study provides rt-PCR-based evidences of M. conjunctivae maintenance in domestic sheep, as well as a relationship between prevalence in domestic sheep and previously reported M. conjunctivae and IKC in wild ruminants. Domestic goats do not seem to play an important role in the epidemiology

Genetic variation of the endangered Gentiana lutea L. var. aurantiaca (Gentianaceae) in populations from the Northwest Iberian Peninsula.

PubMed

González-López, Oscar; Polanco, Carlos; György, Zsuzsanna; Pedryc, Andrzej; Casquero, Pedro A

2014-06-05

Gentiana lutea L. (G. lutea L.) is an endangered plant, patchily distributed along the mountains of Central and Southern Europe. In this study, inter-simple sequence repeat (ISSR) markers were used to investigate the genetic variation in this species within and among populations of G. lutea L. var. aurantiaca of the Cantabrian Mountains (Northwest Iberian Peninsula). Samples of G. lutea L. collected at different locations of the Pyrenees and samples of G. lutea L. subsp. vardjanii of the Dolomites Alps were also analyzed for comparison. Using nine ISSR primers, 106 bands were generated, and 89.6% of those were polymorphic. The populations from the Northwest Iberian Peninsula were clustered in three different groups, with a significant correlation between genetic and geographic distances. Gentiana lutea L. var. aurantiaca showed 19.8% private loci and demonstrated a remarkable level of genetic variation, both among populations and within populations; those populations with the highest level of isolation show the lowest genetic variation within populations. The low number of individuals, as well as the observed genetic structure of the analyzed populations makes it necessary to protect them to ensure their survival before they are too small to persist naturally.

Genetic Variation of the Endangered Gentiana lutea L. var. aurantiaca (Gentianaceae) in Populations from the Northwest Iberian Peninsula

PubMed Central

González-López, Oscar; Polanco, Carlos; György, Zsuzsanna; Pedryc, Andrzej; Casquero, Pedro A.

2014-01-01

Gentiana lutea L. (G. lutea L.) is an endangered plant, patchily distributed along the mountains of Central and Southern Europe. In this study, inter-simple sequence repeat (ISSR) markers were used to investigate the genetic variation in this species within and among populations of G. lutea L. var. aurantiaca of the Cantabrian Mountains (Northwest Iberian Peninsula). Samples of G. lutea L. collected at different locations of the Pyrenees and samples of G. lutea L. subsp. vardjanii of the Dolomites Alps were also analyzed for comparison. Using nine ISSR primers, 106 bands were generated, and 89.6% of those were polymorphic. The populations from the Northwest Iberian Peninsula were clustered in three different groups, with a significant correlation between genetic and geographic distances. Gentiana lutea L. var. aurantiaca showed 19.8% private loci and demonstrated a remarkable level of genetic variation, both among populations and within populations; those populations with the highest level of isolation show the lowest genetic variation within populations. The low number of individuals, as well as the observed genetic structure of the analyzed populations makes it necessary to protect them to ensure their survival before they are too small to persist naturally. PMID:24905405

Future Drought Projections over the Iberian Peninsula using Drought Indices

NASA Astrophysics Data System (ADS)

Garcia-Valdecasas Ojeda, M.; Yeste Donaire, P.; Góngora García, T. M.; Gámiz-Fortis, S. R.; Castro-Diez, Y.; Esteban-Parra, M. J.

2017-12-01

Currently, drought events are the cause of numerous annual economic losses. In a context of climate change, it is expected an increase in the severity and the frequency of drought occurrences, especially in areas such as the Mediterranean region. This study makes use of two drought indices in order to analyze the potential changes on future drought events and their effects at different time scales over a vulnerable region, the Iberian Peninsula. The indices selected were the Standardized Precipitation Evapotranspiration Index (SPEI), which takes into account the global warming through the temperature, and the Standardized Precipitation Index (SPI), based solely on precipitation data, at a spatial resolution of 0.088º ( 10 km). For their computation, current (1980-2014) and future (2021-2050 and 2071-2100) high resolution simulations were carried out using the Weather Research and Forecasting (WRF) model over a domain centered in the Iberian Peninsula, and nested in the 0.44 EUROCORDEX region. WRF simulations were driven by two different global bias-corrected climate models: the version 1 of NCAR's Community Earth System Model (CESM1) and the Max Planck Institute's Earth System Model (MPI-ESM-LR), and under two different Representative Concentration Pathway (RCP) scenarios: RCP 4.5 and RCP 8.5. Future projections were analyzed regarding to changes in mean, median and variance of drought indices with respect to the historical distribution, as well as changes in the frequency and duration of moderate and severe drought events. In general, results suggest an increase in frequency and severity of drought, especially for 2071-2100 period in the RCP 8.5 scenario. Results also shown an increase of drought phenomena more evident using the SPEI. Conclusions from this study could provide a valuable contribution to the understanding of how the increase of the temperature would affect the drought variability in the Mediterranean regions which is necessary for a suitable

Moisture balance over the Iberian Peninsula computed using a high resolution regional climate model. The impact of 3DVAR data assimilation.

NASA Astrophysics Data System (ADS)

González-Rojí, Santos J.; Sáenz, Jon; Ibarra-Berastegi, Gabriel

2016-04-01

A numerical downscaling exercise over the Iberian Peninsula has been run nesting the WRF model inside ERA Interim. The Iberian Peninsula has been covered by a 15km x 15 km grid with 51 vertical levels. Two model configurations have been tested in two experiments spanning the period 2010-2014 after a one year spin-up (2009). In both cases, the model uses high resolution daily-varying SST fields and the Noah land surface model. In the first experiment (N), after the model is initialised, boundary conditions drive the model, as usual in numerical downscaling experiments. The second experiment (D) is configured the same way as the N case, but 3DVAR data assimilation is run every six hours (00Z, 06Z, 12Z and 18Z) using observations obtained from the PREPBUFR dataset (NCEP ADP Global Upper Air and Surface Weather Observations) using a 120' window around analysis times. For the data assimilation experiment (D), seasonally (monthly) varying background error covariance matrices have been prepared according to the parameterisations used and the mesoscale model domain. For both N and D runs, the moisture balance of the model runs has been evaluated over the Iberian Peninsula, both internally according to the model results (moisture balance in the model) and also in terms of the observed moisture fields from observational datasets (particularly precipitable water and precipitation from observations). Verification has been performed both at the daily and monthly time scales. The verification has also been performed for ERA Interim, the driving coarse-scale dataset used to drive the regional model too. Results show that the leading terms that must be considered over the area are the tendency in the precipitable water column, the divergence of moisture flux, evaporation (computed from latent heat flux at the surface) and precipitation. In the case of ERA Interim, the divergence of Qc is also relevant, although still a minor player in the moisture balance. Both mesoscale model

A Powerful Antidote, a Strange Camel and Turkish Pepper: Iberian Science, the Discovery of the New World and the Early Modem Czech Lands.

PubMed

Cerna, Jana

2016-08-01

This article analyses the reception of knowledge about new world nature, and, more specifically, the reception of Iberian scientific knowledge of nature in the Americas, in the early modem Czech lands. It shows how the process of the reception of information about nature in the new world differed among the urban classes, intellectuals and the nobility; particular attention is paid to herbals, cosmographical works and travel reports. On the one hand, the study reveals that the efforts of Central European intellectuals to interpret new world nature were limited by the lack of necessary data and experience, which led to some misinterpretations and simplifications. On the other hand, it shows these Central European scholars to be fully-fledged members of an information network, whose works share many of the same characteristics as Iberian and, in general, early modem European science.

S-type granite generation and emplacement during a regional switch from extensional to contractional deformation (Central Iberian Zone, Iberian autochthonous domain, Variscan Orogeny)

NASA Astrophysics Data System (ADS)

Pereira, M. F.; Díez Fernández, R.; Gama, C.; Hofmann, M.; Gärtner, A.; Linnemann, U.

2018-01-01

Zircon grains extracted from S-type granites of the Mêda-Escalhão-Penedono Massif (Central Iberian Zone, Variscan Orogen) constrain the timing of emplacement and provide information about potential magma sources. Simple and composite zircon grains from three samples of S-type granite were analyzed by LA-ICP-MS. New U-Pb data indicate that granites crystallized in the Bashkirian (318.7 ± 4.8 Ma) overlapping the proposed age range of ca. 321-317 Ma of the nearby S-type granitic rocks of the Carrazeda de Anciães, Lamego and Ucanha-Vilar massifs. The timing of emplacement of such S-type granites seems to coincide with the waning stages of activity of a D2 extensional shear zone (i.e. Pinhel shear zone) developed in metamorphic conditions that reached partial melting and anatexis (ca. 321-317 Ma). Dykes of two-mica granites (resembling diatexite migmatite) are concordant and discordant to the compositional layering and S2 (main) foliation of the high-grade metamorphic rocks of the Pinhel shear zone. Much of the planar fabric in these dykes was formed during magmatic crystallization and subsequent solid-state deformation. Field relationships suggest contemporaneity between the ca. 319-317 Ma old magmatism of the study area and the switch from late D2 extensional deformation to early D3 contractional deformation. Inherited zircon cores are well preserved in these late D2-early D3 S-type granite plutons. U-Pb ages of inherited zircon cores range from ca. 2576 to ca. 421 Ma. The spectra of inherited cores overlap closely the range of detrital and magmatic zircon grains displayed by the Ediacaran to Silurian metasedimentary and metaigneous rocks of the Iberian autochthonous and parautochthonous domains. This is evidence of a genetic relationship between S-type granites and the host metamorphic rocks. There is no substantial evidence for the addition of mantle-derived material in the genesis of these late D2-early D3 S-type granitic rocks. The ɛNd arrays of heterogeneous

Inherited segmentation of the Iberian-African margins and tectonic reconstruction of a diffuse plate boundary.

NASA Astrophysics Data System (ADS)

Fernàndez, Manel; Torne, Montserrat; Vergés, Jaume; Casciello, Emilio

2016-04-01

Diffuse plate-boundary regions are characterized by non-well defined contacts between tectonic plates thus making difficult their reconstruction through time. The Western Mediterranean is one of these regions, where the convergence between the African and Iberian plates since Late Cretaceous resulted in the Betic-Rif arcuate orogen, the Gulf of Cadiz imbricate wedge, and the Alboran back-arc basin. Whereas the Iberia-Africa plate boundary is well defined west to the Gorringe Bank and along the Gloria Fault, it becomes much more diffuse eastwards with seismicity spreading over both the south-Iberian and north-African margins. Gravity data, when filtered for short wavelengths, show conspicuous positive Bouguer anomalies associated with the Gorringe Bank, the Gulf of Cadiz High and the Ronda/Beni-Bousera peridotitic massifs reflecting an inherited Jurassic margin segmentation. The subsequent Alpine convergence between Africa and Iberia reactivated these domains, producing crustal-scale thrusting in the Atlantic segments and eventually subduction in the proto-Mediterranean segments. The Jurassic segmentation of the Iberia-Africa margins substantiates the double-polarity subduction model proposed for the region characterized by a change from SE-dipping polarity in the Gorringe, Gulf of Cadiz and Betic-Rif domains, to NW-dipping polarity in the proto-Algerian domain. Therefore, the Algerian and Tyrrhenian basins in the east and the Alboran basin in the west are the result of SSE-E and NW-W retreating slabs of oceanic and/or hyper-extended Tethyan domains, respectively.

Weather Types, temperature and relief relationship in the Iberian Peninsula: A regional adiabatic processes under directional weather types

NASA Astrophysics Data System (ADS)

Peña Angulo, Dhais; Trigo, Ricardo; Cortesi, Nicola; Gonzalez-Hidalgo, Jose Carlos

2016-04-01

We have analyzed at monthly scale the spatial distribution of Pearson correlation between monthly mean of maximum (Tmax) and minimum (Tmin) temperatures with weather types (WTs) in the Iberian Peninsula (IP), represent them in a high spatial resolution grid (10km x 10km) from MOTEDAS dataset (Gonzalez-Hidalgo et al., 2015a). The WT classification was that developed by Jenkinson and Collison, adapted to the Iberian Peninsula by Trigo and DaCamara, using Sea Level Pressure data from NCAR/NCEP Reanalysis dataset (period 1951-2010). The spatial distribution of Pearson correlations shows a clear zonal gradient in Tmax under the zonal advection produced in westerly (W) and easterly (E) flows, with negative correlation in the coastland where the air mass come from but positive correlation to the inland areas. The same is true under North-West (NW), North-East (NE), South-West (SW) and South-East (SE) WTs. These spatial gradients are coherent with the spatial distribution of the main mountain chain and offer an example of regional adiabatic phenomena that affect the entire IP (Peña-Angulo et al., 2015b). These spatial gradients have not been observed in Tmin. We suggest that Tmin values are less sensitive to changes in Sea Level Pressure and more related to local factors. These directional WT present a monthly frequency over 10 days and could be a valuable tool for downscaling processes. González-Hidalgo J.C., Peña-Angulo D., Brunetti M., Cortesi, C. (2015a): MOTEDAS: a new monthly temperature database for mainland Spain and the trend in temperature (1951-2010). International Journal of Climatology 31, 715-731. DOI: 10.1002/joc.4298 Peña-Angulo, D., Trigo, R., Cortesi, C., González-Hidalgo, J.C. (2015b): The influence of weather types on the monthly average maximum and minimum temperatures in the Iberian Peninsula. Submitted to Hydrology and Earth System Sciences.

Cadomian magmatism and metamorphism at the Ossa Morena/Central Iberian zone boundary, Iberian Massif, Central Portugal: Geochemistry and P-T constraints of the Sardoal Complex

NASA Astrophysics Data System (ADS)

Henriques, S. B. A.; Neiva, A. M. R.; Tajčmanová, L.; Dunning, G. R.

2017-01-01

A well preserved Cadomian basement is exposed in the Iberian Massif, Central Portugal, at the Ossa Morena/Central Iberian zone boundary, which allows the determination of reliable geochemical data. A sequence of Cadomian and Variscan magmatic and tectonometamorphic events has been already described for this area and are documented in other areas of the Avalonian-Cadomian orogen. However, the geochemical information concerning the Cadomian basement for this area is still limited. We present whole rock geochemical and oxygen isotopic information to characterize the igneous protoliths of the Sardoal Complex, located within the Tomar-Badajoz-Córdoba Shear Zone, and identify their tectonic setting. We use detailed petrography, mineral chemistry and P-T data to characterize the final Cadomian tectonometamorphic event. The Sardoal Complex contains orthogneiss and amphibolite units. The protoliths of the orthogneiss are calc-alkaline magmas of acid composition and peraluminous character that were generated in an active continental margin in three different stages (ca. 692 Ma, ca. 569 Ma and ca. 548 Ma). The most significant processes in their petrogenesis are the partial melting of old metasedimentary and meta-igneous crust at different crustal levels and the crystal fractionation of plagioclase, alkali feldspars, apatite, zircon and Fe-Ti oxides. The protoliths of the amphibolite, older than ca. 540 Ma, are tholeiitic and calc-alkaline magmas of basic composition that display N-, T- and E-MORB affinities. They were generated in an active continental margin. Crustal contamination and fractional crystallization of hornblende and diopside were involved in their petrogenesis. However, the fractional crystallization was not significant. The magmatic activity recorded in the Sardoal Complex indicates the existence of a long-lived continental arc (ca. 692-540 Ma) with coeval felsic and mafic magmatism. The final stage of the Cadomian metamorphism is usually represented in other

Non-stationary influence of El Niño-Southern Oscillation and winter temperature on oak latewood growth in NW Iberian Peninsula.

PubMed

Rozas, Vicente; García-González, Ignacio

2012-09-01

The properties of El Niño-Southern Oscillation (ENSO), such as period, amplitude, and teleconnection strength to extratropical regions, have changed since the mid-1970s. ENSO affects the regional climatic regime in SW Europe, thus tree performance in the Iberian Peninsula could be affected by recent ENSO dynamics. We established four Quercus robur chronologies of earlywood and latewood widths in the NW Iberian Peninsula. The relationship between tree growth and the Southern Oscillation Index (SOI), the atmospheric expression of ENSO, showed that only latewood growth was correlated negatively with the SOI of the previous summer-autumn-winter. This relationship was non-stationary, with significant correlations only during the period 1952-1980; and also non-linear, with enhanced latewood growth only in La Niña years, i.e. years with a negative SOI index for the previous autumn. Non-linear relationship between latewood and SOI indicates an asymmetric influence of ENSO on tree performance, biassed towards negative SOI phases. During La Niña years, climate in the study area was warmer and wetter than during positive years, but only for 1952-1980. Winter temperatures became the most limiting factor for latewood growth since 1980, when mean regional temperatures increased by 1°C in comparison to previous periods. As a result, higher winter respiration rates, and the extension of the growing season, would probably cause an additional consumption of stored carbohydrates. The influence of ENSO and winter temperatures proved to be of great importance for tree growth, even at lower altitudes and under mild Atlantic climate in the NW Iberian Peninsula.

An initial study on the succession of sarcosaprophagous Diptera (Insecta) on carrion in the southeastern Iberian peninsula.

PubMed

Arnaldos, I; Romera, E; García, M D; Luna, A

2001-01-01

We present the results of the first study concerning Diptera carried out on the sarcosaprophagous fauna of southeastern Spain. This work represents the first attempt to describe dipteran sarcosaprophagous fauna in the Iberian peninsula, the seasonal succession, main features of the population dynamics and the main taxa useful for estimation of the post-mortem interval. The results of this study could be very useful for further forensic case work in the west Mediterranean area.

Gastrointestinal nematode infections in roe deer (Capreolus capreolus) from the NW of the Iberian Peninsula: assessment of some risk factors.

PubMed

Pato, F J; Vázquez, L; Díez-Baños, N; López, C; Sánchez-Andrade, R; Fernández, G; Díez-Baños, P; Panadero, R; Díaz, P; Morrondo, P

2013-09-01

Intestinal contents of 218 roe deer hunted in the northwest (NW) of the Iberian Peninsula during the 2008-2009 hunting seasons were examined in order to provide information on the gastrointestinal (GI) nematode prevalence and intensity of infection and the possible influence of some environmental and intrinsic factors such as climatic conditions, age and sex. All the animals studied harboured GI nematodes, and a total of 20 different species belonging to ten genera were identified. Spiculopteragia spiculoptera/Spiculopteragia mathevossiani, Ostertagia leptospicularis/Ostertagia kolchida and Nematodirus filicollis were the most common. This is the first citation for Chabertia ovina, Cooperia pectinata, Cooperia punctata, Cooperia oncophora, Haemonchus contortus, Nematodirus spathiger, Oesophagostomum venulosum, Teladorsagia trifurcata, Trichostrongylus capricola, Trichostrongylus colubriformis, Trichostrongylus vitrinus and Trichuris capreoli in roe deer from the Iberian Peninsula. Prevalence and intensity were significantly higher in the abomasum, where infections with more than one GI nematode species were the most common; in the other intestinal segments infections with only one GI nematode species were the most prevalent. When considering the influence of the different risk factors on the prevalence of GI nematodes, the highest prevalence for most of the genera were observed in roe deer from coastal areas, where climatic conditions are more favourable for the development and survival of third stage larvae in the environment. Regarding the sex of the animals, the prevalence was, in general, higher in males than in females, probably due to behavioural and physiological sex-related differences. On the contrary, no differences were found in relation to the age of the animals. This study reveals that roe deer from the NW of the Iberian Peninsula are widely and intensely infected with gastrointestinal nematodes, which probably affect the health status of these

Prevalence of severe fever with thrombocytopenia syndrome virus in black goats (Capra hircus coreanae) in the Republic of Korea.

PubMed

Kang, Jun-Gu; Cho, Yoon-Kyoung; Jo, Yong-Sun; Chae, Jeong-Byoung; Oh, Sung-Suck; Kim, Kye-Hyung; Ko, Mee-Kyung; Yi, Jongyoun; Choi, Kyoung-Seong; Yu, Do-Hyeon; Kim, Hyeon-Cheol; Park, Jinho; Park, Bae-Keun; Choi, Chang-Yong; Jung, Young-Hun; Chae, Joon-Seok

2018-04-26

Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging tick-borne pathogen in China, Japan, and the Republic of Korea (ROK). The aim of this study was to investigate the prevalence of SFTSV antigens and anti-SFTSV antibodies in black goats (Capra hircus coreanae) throughout the ROK. Sera were collected from 737 black goats in nine provinces in the ROK. Eighteen of 737 (2.4%) goat sera were positive for SFTSV on one-step reverse transcription nested polymerase chain reaction. The amplified 346-bp S segments of SFTSV sequences were classified into three genotypes (BG1, BG2, and BG3), and were included in the Japanese clade rather than the Chinese clade, based on phylogenetic analysis. Forty-three of 624 (6.9%) serum samples were seropositive for anti-SFTSV antibodies on enzyme-linked immunosorbent assay analysis. This study is the first to examine the molecular prevalence of SFTSV in goats and the first to perform serological detection of anti-SFTSV antibodies in livestock in the ROK. Moreover, the results indicate that SFTSV is widely distributed in goats and that additional monitoring for SFTSV is needed in livestock in the ROK. Copyright © 2018 Elsevier GmbH. All rights reserved.

KSC-08pd2042

NASA Image and Video Library

2008-07-09

VANDENBERG AIR FORCE BASE, Calif. -- Avionics shelf flatness and fillet gap measurements are conducted on the wing of a Pegasus rocket in Building 1555 at Vandenberg AFB. The testing was performed by workers from Advanced Digital Measuring Works using an API laser tracker. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch in October 2008. Photo credit: NASA/Randy Beaudoin

KSC-08pd2043

NASA Image and Video Library

2008-07-11

VANDENBERG AIR FORCE BASE, Calif. -- Avionics shelf flatness and fillet gap measurements are conducted on the wing of a Pegasus rocket in Building 1555 at Vandenberg AFB. The testing was performed by workers from Advanced Digital Measuring Works using an API laser tracker. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch in October 2008. Photo credit: NASA/Randy Beaudoin

Cretaceous subduction in the Pyrenees: Iberian plate-kinematics in a mantle reference frame

NASA Astrophysics Data System (ADS)

Vissers, Reinoud; van Hinsbergen, Douwe; van der Meer, Douwe; Spakman, Wim

2016-04-01

During the Cretaceous, Iberia was a microplate separated from Laurasia and Gondwana by ridges and transforms, and by a convergent margin to its northeast along which the Pyrenean fold-thrust belt developed. As a microplate, Iberia underwent a well-defined but ill-understood Albian-Aptian ~ 35° counterclockwise rotation relative to Eurasia. Three competing kinematic scenarios for Iberian motion in the late Mesozoic are all compatible with the Pyrenean geological record and comprise (1) transtensional eastward motion of Iberia versus Eurasia, (2) strike-slip motion followed by orthogonal extension and (3) scissor-style opening of the Bay of Biscay coupled with subduction in the Pyrenean realm. The last scenario is the only one consistent with paleomagnetic and ocean floor anomaly constraints showing Iberia's rotation, but is criticized because the upper mantle below the Pyrenees contains no evidence for a subducted slab. Here we show that when taking absolute plate motions into account, Aptian oceanic subduction in the Pyrenees followed by Albian slab break-off should leave a slab remnant in the present-day mid-mantle below NW Africa instead of below the Pyrenees. Mantle tomography shows a positive seismic velocity anomaly that matches the predicted position and dimension of such a slab remnant between 1900 and 1500 km depth below Reggane in Southern Algeria. Seismic tomographic imaging of the mantle structure therefore does not falsify the Pyrenean subduction hypothesis, and provides no basis to discard marine magnetic and paleomagnetic constraints on Iberia's kinematic history. Slab break-off explains the well-dated Albian-Cenomanian high-temperature metamorphism in the Pyrenees that hitherto has been interpreted as an expression of continental break-up and hyperextension. We suspect that subduction in the Pyrenees may have played a key role in driving the rapid Aptian rotation of the Iberian microplate.

Charging of Interstellar Dust Grains in the out-of-equilibrium Heliosheath Plasma traced by IBEX ENAs

NASA Astrophysics Data System (ADS)

Frisch, P. C.; Ogasawara, K.; Livadiotis, G.; Slavin, J. D.; McComas, D. J.; Funsten, H. O.; Schwadron, N.; Heerikhuisen, J.

2017-12-01

Dusty bow waves are common around stars and anticipated around the heliosphere due to the deficit of low-mass interstellar dust grains in the inner heliosphere. Interstellar grains entering the heliosphere must first cross barriers of non-Maxwellian plasma in the heliosheath regions where collisional charging of grains is highly effective. IBEX measures 0.1-6 keV ENAs in the heliosheath plasma, providing an in situ sample of the heliosheath plasma thermodynamics that can be used for grain-charging calculations. Plasma in three-quarters of the sky can be described with a stationary state kappa-distribution, giving predictions for kappa, kappa-distribution temperature, and plasma density [1]. This thermodynamic description allows a more realistic evaluation of the dominant heliosheath electron and ion currents, and hence also grain gyroradii and exclusion from the heliosphere. At the highest temperatures ion collisional currents dominate grain charging; at lower temperatures collisional electron currents are more important together with the photoelectric ejection of electrons. An absence of data on the thermodynamical state of heliosheath electrons has led to the assumption of similar thermodynamic parameters for the electron and ion populations. The balance between electron, proton and photoionization currents on the grains then yield the equilibrium grain charges. Grain gyroradii calculated based on these charging currents differentiate between interstellar grains able to penetrate the heliosphere, versus those that are excluded, and allow predictions of properties of the dusty bow wave likely to be present around the heliosphere. The smallest grains are excluded and grains at the high latitude edges of the described regions tend to have systematically lower grain potentials. Grain charging calculations utilize the modeling of [2]. [1] Livadiotis et al., ApJ 734, 1 (2011). [2] Weingartner Draine, ApJSS 263 (2001)

Instability and its relation to precipitation over the Eastern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Iturrioz, I.; Hernández, E.; Ribera, P.; Queralt, S.

2007-04-01

Synoptic situations producing rainfall at four rawinsonde observatories at eastern Spain are classified as stratiform or convective depending on dynamic and thermodynamic instability indices. Two daily radiosonde and daily-accumulated precipitation data from four observatories in Eastern Spain are used: Madrid-Barajas (MB), Murcia (MU), Palma de Mallorca (PA) and Zaragoza (ZA). We calculated two thermodynamic instability indices from radiosonde data: CAPE and LI. Likewise, from ERA40 reanalysis data we have calculated the Q vector divergence over the Iberian Peninsula and Balearic Islands, as a parameter describing dynamical instability. Synoptic situations producing rainfall were classified as convective or stratiform, satisfying a criterion based on the values of dynamic and thermodynamic indices at each observatory. It is observed that the number of days with stratiform precipitation related to the total number of precipitation days follows a consistent annual pattern.

Larval connectivity studies in the Western Iberian Peninsula

NASA Astrophysics Data System (ADS)

Dubert, Jesus; Nolasco, Rita; Queiroga, Henrique

2010-05-01

The study of the connectivity between populations is one of the 'hot' applications of numerical models of the ocean circulation. An IBM (Individual Based model) was developed, using Carcinus manenas larvae crab as a model. A set of particles was used as a representation of larvae, in order to study their larval life cycle, including the larval growth, larval mortality (both depending on temperature and salinity), larval dispersal by currents, diel vertical migration, and larval recruitment. The life cycle of every larvae in the ocean, was modeled from zoeae 1 stage to megalopae stage, during typical periods of 30-50 days. Larvae were initialized in 14 estuarine systems of the Atlantic Western Iberian Peninsula, from January to July. In every period, a number of 225 larvae are initialized in everyone of the 14 considered estuaries, with fortynighly periodicity. The larvae evolves during the (variable, depending mainly on temperature) period of growth in the ocean, and when a larvae reach the age for recruit, if it is located in the neighborhood of the considered estuarine systems, the larvae is accounted as a recruited larvae in that place. With this methodology, a connectivity matrix can be computed, acconting for the 225 larvae emitted in every estuary, the number of larvae that reaches the every place. The connectivity matrix depends strongly on the current regime along the Atlantic coast of Iberian Peninsula, and has been calculated for the present circulation, for the period 2001 to 2009, for runs with realistic forcing with NCEP2 and Quikscat (for winds) forcing. The connectivity matrix, have also been calculated for climatological runs. For the present climatological conditions, it is observed the prevalence of southward transport for the period January-July, because the prevalence of Northerly winds along the west coast of IP in the COADS present time climatology. Strong dispersal is observed at the Northern estuaries, during winter with strong loss of

KSC-08pd1685

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers check the movement of the wing toward the Pegasus XL launch vehicle. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1682

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1677

NASA Image and Video Library

2008-04-28

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, the wings of the Pegasus XL launch vehicle are checked for fit. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1686

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers check the fit of the wing on the Pegasus XL launch vehicle. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1683

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle in the background for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1676

NASA Image and Video Library

2008-04-28

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, the wings of the Pegasus XL launch vehicle are checked for fit. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1684

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle in the background for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

The ichthyoplankton assemblage and the environmental variables off the NW and N Iberian Peninsula coasts, in early spring

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Gonzalez-Nuevo, G.; Gonzalez-Pola, C.; Cabal, J.

2009-05-01

Ichthyoplankton and mesozooplankton were sampled and fluorescence and physical environmental variables were measured off the NW and N Iberian Peninsula coasts, during April 2005. A total of 51 species of fish larvae, belonging to 26 families, were recorded. Sardina pilchardus, with 43.8% and 58.7% of the total fish egg and larval catches, respectively, dominated the ichthyoplankton assemblage. The study area was divided by a cross-shelf frontal structure into two hydrographic regions that coincided with the Atlantic and Cantabrian geographic regions. Ichthyoplankton abundance was higher in the Cantabrian region while larval diversity was higher in the Atlantic region. This was the main alongshore variability in the structure of the larval fish assemblage. Nevertheless, the stronger variability, related with the presence of a shelf-slope front, was found in the central-eastern Cantabrian region where two major larval fish assemblages, an "outer" and a "coastal", were distinguished. The Atlantic region, where the shelf-slope front was not found, was inhabited by a single larval fish assemblage. Canonical correspondence analysis revealed that, off the NW and N Iberian Peninsula coasts, the horizontal distribution of larval fish species in early spring may be explained by a limited number of environmental variables. Of these, the most important were the physical variables depth and sea surface temperature.

Climatic implications of the Quaternary fluvial tufa record in the NE Iberian Peninsula over the last 500 ka

NASA Astrophysics Data System (ADS)

Sancho, Carlos; Arenas, Concha; Vázquez-Urbez, Marta; Pardo, Gonzalo; Lozano, María Victoria; Peña-Monné, José Luis; Hellstrom, John; Ortiz, José Eugenio; Osácar, María Cinta; Auqué, Luis; Torres, Trinidad

2015-11-01

The drainage area of the Iberian Ranges (NE Spain) houses one of the most extensive Quaternary fluvial tufaceous records in Europe. In this study, tufa deposits in the Añamaza, Mesa, Piedra and Ebrón river valleys were mapped, stratigraphically described and chronologically referenced from U/Th disequilibrium series, amino acid racemization and radiocarbon methods. Tufa deposits accumulated in cascades, barrage-cascades and related damming areas developed in stepped fluvial systems. The maximum frequency of tufa deposition was identified at 120 ka (Marine Oxygen Isotope Stage [MIS] 5e), 102 ka (MIS 5c), 85 ka ( MIS 5a) and 7 ka (MIS 1), probably under warmer and wetter conditions than today. Additional phases of tufa deposition appear at 353 ka ( end of MIS 11), 258-180 ka (MIS 7) and 171-154 ka (MIS 6). Although most tufa deposition episodes are clearly correlated with interstadial periods, the occurrence of tufa deposits during the penultimate glaciation (MIS 6) is remarkable, indicating that the onset of this stage was climatically favourable in the Iberian Peninsula. Biostatic conditions and the dynamics of karstic systems regulating tufa deposition seem to be sensitive to the precipitation regime, controlled by shifts in the position of North Atlantic atmospheric belts, and summer insolation, regulated by orbital forcing.

Variation in sclerophylly among Iberian populations of Quercus coccifera L. is associated with genetic differentiation across contrasting environments.

PubMed

Rubio de Casas, R; Vargas, P; Pérez-Corona, E; Cano, E; Manrique, E; García-Verdugo, C; Balaguer, L

2009-05-01

Evergreen oaks are an emblematic element of the Mediterranean vegetation and have a leaf phenotype that seems to have remained unchanged since the Miocene. We hypothesise that variation of the sclerophyll phenotype among Iberian populations of Quercus coccifera is partly due to an ulterior process of ecotypic differentiation. We analysed the genetic structure of nine Iberian populations using ISSR fingerprints, and their leaf phenotypes using mean and intracanopy plasticity values of eight morphological (leaf angle, area, spinescence, lobation and specific area) and biochemical traits (VAZ pool, chlorophyll and beta-carotene content). Climate and soil were also characterised at the population sites. Significant genetic and phenotypic differences were found among populations and between NE Iberia and the rest of the populations of the peninsula. Mean phenotypes showed a strong and independent correlation with both genetic and geographic distances. Northeastern plants were smaller, less plastic, with smaller, spinier and thicker leaves, a phenotype consistent with the stressful conditions that prevailed in the steppe environments of the refugia within this geographic area during glaciations. These genetic, phenotypic, geographic and environmental patterns are consistent with previously reported palaeoecological and common evidence. Such consistency leads us to conclude that there has been a Quaternary divergence within the sclerophyllous syndrome that was at least partially driven by ecological factors.

Strain indicators and magnetic fabric in intraplate fault zones: Case study of Daroca thrust, Iberian Chain, Spain

NASA Astrophysics Data System (ADS)

Casas-Sainz, A. M.; Gil-Imaz, A.; Simón, J. L.; Izquierdo-Llavall, E.; Aldega, L.; Román-Berdiel, T.; Osácar, M. C.; Pueyo-Anchuela, Ó.; Ansón, M.; García-Lasanta, C.; Corrado, S.; Invernizzi, C.; Caricchi, C.

2018-04-01

Anisotropy of magnetic susceptibility (AMS) has been applied to the study of shallow fault zones, although interpretation of the results requires establishing clear relationships between petrofabric and magnetic features, magnetic behaviour of fault rocks, and an extensive knowledge of P-T conditions. In this work, we demonstrate that magnetic methods can be applied to the study of heterogeneous fault zones, provided that a series of requisites are met. A major fault zone within the Iberian plate (Daroca thrust), showing transpressional movements during Cenozoic time was chosen for this purpose, because of the exceptional outcrops of fault gouge and microbreccia and its relevance within the context of the northeastern Iberian Plate. Magnetic fabrics were analysed and the results were compared with foliation and S-C structures measured within the fault zone. Clay mineral assemblages suggest maximum burial depths shallower than 2 km (<60-70 °C) for fault rocks in the footwall of the Daroca thrust. The orientation of the AMS axes is consistent with mesostructural strain indicators: kmin parallels the mean pole to S, or it is intermediate between S and C poles; kmax is oriented at a high angle (nearly orthogonal in overall) to the transport direction, which can be explained from both deformational and mineralogical controls. Both magnetic fabrics and kinematic indicators are consistent with a reverse movement for most of the fault zone.

Climatic niche and neutral genetic diversity of the six Iberian pine species: a retrospective and prospective view.

PubMed

Soto, A; Robledo-Arnuncio, J J; González-Martínez, S C; Smouse, P E; Alía, R

2010-04-01

Quaternary climatic fluctuations have left contrasting historical footprints on the neutral genetic diversity patterns of existing populations of different tree species. We should expect the demography, and consequently the neutral genetic structure, of taxa less tolerant to particular climatic extremes to be more sensitive to long-term climate fluctuations. We explore this hypothesis here by sampling all six pine species found in the Iberian Peninsula (2464 individuals, 105 populations), using a common set of chloroplast microsatellite markers, and by looking at the association between neutral genetic diversity and species-specific climatic requirements. We found large variation in neutral genetic diversity and structure among Iberian pines, with cold-enduring mountain species (Pinus uncinata, P. sylvestris and P. nigra) showing substantially greater diversity than thermophilous taxa (P. pinea and P. halepensis). Within species, we observed a significant positive correlation between population genetic diversity and summer precipitation for some of the mountain pines. The observed pattern is consistent with the hypotheses that: (i) more thermophilous species have been subjected to stronger demographic fluctuations in the past, as a consequence of their maladaptation to recurrent glacial cold stages; and (ii) altitudinal migrations have allowed the maintenance of large effective population sizes and genetic variation in cold-tolerant species, especially in more humid regions. In the light of these results and hypotheses, we discuss some potential genetic consequences of impending climate change.

Genetic structure and diversity of the selfing model grass Brachypodium stacei (Poaceae) in Western Mediterranean: out of the Iberian Peninsula and into the islands.

PubMed

Shiposha, Valeriia; Catalán, Pilar; Olonova, Marina; Marques, Isabel

2016-01-01

Annual Mediterranean species of the genus Brachypodium are promising model plants for energy crops since their selfing nature and short-life cycles are an advantage in breeding programs. The false brome, B. distachyon, has already been sequenced and new genomic initiatives have triggered the de-novo genome sequencing of its close relatives such as B. stacei, a species that was until recently mistaken for B. distachyon. However, the success of these initiatives hinges on detailed knowledge about the distribution of genetic variation within and among populations for the effective use of germplasm in a breeding program. Understanding population genetic diversity and genetic structure is also an important prerequisite for designing effective experimental populations for genomic wide studies. However, population genetic data are still limited in B. stacei. We therefore selected and amplified 10 nuclear microsatellite markers to depict patterns of population structure and genetic variation among 181 individuals from 19 populations of B. stacei occurring in its predominant range, the western Mediterranean area: mainland Iberian Peninsula, continental Balearic Islands and oceanic Canary Islands. Our genetic results support the occurrence of a predominant selfing system with extremely high levels of homozygosity across the analyzed populations. Despite the low level of genetic variation found, two different genetic clusters were retrieved, one clustering all SE Iberian mainland populations and the island of Minorca and another one grouping all S Iberian mainland populations, the Canary Islands and all Majorcan populations except one that clustered with the former group. These results, together with a high sharing of alleles (89%) suggest different colonization routes from the mainland Iberian Peninsula into the islands. A recent colonization scenario could explain the relatively low levels of genetic diversity and low number of alleles found in the Canary Islands

Genetic structure and diversity of the selfing model grass Brachypodium stacei (Poaceae) in Western Mediterranean: out of the Iberian Peninsula and into the islands

PubMed Central

Shiposha, Valeriia; Catalán, Pilar; Olonova, Marina

2016-01-01

Annual Mediterranean species of the genus Brachypodium are promising model plants for energy crops since their selfing nature and short-life cycles are an advantage in breeding programs. The false brome, B. distachyon, has already been sequenced and new genomic initiatives have triggered the de-novo genome sequencing of its close relatives such as B. stacei, a species that was until recently mistaken for B. distachyon. However, the success of these initiatives hinges on detailed knowledge about the distribution of genetic variation within and among populations for the effective use of germplasm in a breeding program. Understanding population genetic diversity and genetic structure is also an important prerequisite for designing effective experimental populations for genomic wide studies. However, population genetic data are still limited in B. stacei. We therefore selected and amplified 10 nuclear microsatellite markers to depict patterns of population structure and genetic variation among 181 individuals from 19 populations of B. stacei occurring in its predominant range, the western Mediterranean area: mainland Iberian Peninsula, continental Balearic Islands and oceanic Canary Islands. Our genetic results support the occurrence of a predominant selfing system with extremely high levels of homozygosity across the analyzed populations. Despite the low level of genetic variation found, two different genetic clusters were retrieved, one clustering all SE Iberian mainland populations and the island of Minorca and another one grouping all S Iberian mainland populations, the Canary Islands and all Majorcan populations except one that clustered with the former group. These results, together with a high sharing of alleles (89%) suggest different colonization routes from the mainland Iberian Peninsula into the islands. A recent colonization scenario could explain the relatively low levels of genetic diversity and low number of alleles found in the Canary Islands

Groundwater dependant vegetation identified by remote sensing in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Gouveia, Célia; Pascoa, Patrícia; Kurz-Besson, Cathy

2017-04-01

Groundwater Dependant Ecosystems (GDEs) are defined as ecosystems whose composition, structure, and function depend on the water supplies from groundwater aquifers. Within GDEs, phreatophytes are terrestrial plants relying on groundwater through deep rooting. They can be found worldwide but are mostly adapted to environments facing scarce water availability or recurrent drought periods mainly in semi-arid to arid climate geographical areas, such as the Mediterranean basin. We present a map of the potential distribution of GDEs over the Iberian Peninsula (IP) obtained by remote sensing and identifying hotspots corresponding to the most vulnerable areas for rainfed vegetation facing the risk of desertification. The characterization of GDEs was assessed by remote sensing (RS), using CORINE land-cover information and the Normalized Difference Vegetation Index (NDVI) from VEGETATION recorded between 1998 and 2014 with a resolution of 1km. The methodology based on Gou et al (2015) relied on three approaches to map GDEs over the IP by: i) Detecting vegetation remaining green during the dry periods, since GDEs are more likely to show high NDVI values during summer of dry years; ii) Spotting vegetation with low seasonal changes since GDEs are more prone to have the lowest NDVI standard deviation along an entire year, and iii) Discriminating vegetation with low inter-annual variability since GDEs areas should provide the lowest NDVI changes between extreme wet and dry years. A geospatial analysis was performed to gather the potential area of GDEs (obtained with NDVI), vegetation land cover types (CORINE land cover) and climatic variables (temperature, precipitation and the Standardized Precipitation-Evapotranspiration Index SPEI). This analysis allowed the identification of hotspots of the most vulnerable areas for rainfed vegetation regarding water scarcity over the Iberian Peninsula, where protection measures should be urgently applied to sustain rainfed ecosystem and agro

Assessment of chlorophyll variability along the northwestern coast of Iberian Peninsula

NASA Astrophysics Data System (ADS)

Picado, A.; Alvarez, I.; Vaz, N.; Varela, R.; Gomez-Gesteira, M.; Dias, J. M.

2014-10-01

The northwestern coast of the Iberian Peninsula is characterized by a high primary production mainly supported by coastal upwelling, creating an extraordinary commercial interest for fisheries and aquaculture. Considering chlorophyll-a (Chl-a) as an indicator of primary production, its spatio-temporal variability was researched in this study in the surface water of this upwelling region from 1998 to 2007. Satellite derived Chl-a, Sea Surface Temperature (SST) and Ekman transport data as well as the inflow of the main rivers discharging into the study area were used to investigate the origin of the Chl-a concentration. Empirical Orthogonal Function (EOF) analysis of weekly Chl-a images was performed, as well as correlation analysis between Chl-a concentration, Ekman transport and river discharge. EOF results suggest that the highest Chl-a concentration occurs near the coast up to 60 km offshore. The interannual variability of Chl-a, SST and Ekman transport was also studied considering summer and winter months. Generally, 2005, 2006 and 2007 were the most productive years during the summer months with high Chl-a concentrations along the coast associated to the strong upwelling conditions observed. Otherwise, 1998 seemed to be the most productive year during winter. The absence of upwelling favorable conditions together with localized low SST and considerable discharges, suggests that the high Chl-a concentrations observed during this period are mainly due to the entrance of nutrients through river runoff. However, in winter, high concentrations of colored dissolved organic matter (CDOM), associated with river runoff, are present in the ocean surface, leading to an erroneous strong signal of the satellite. During winter correlations of 0.58 and 0.49 were found between Chl-a concentration and Douro and Minho discharges, respectively, evidencing that high Chl-a concentration was related with river runoff. Otherwise, during summer, Chl-a and Ekman transport exhibited a

Árnica: a multivariate analysis of the botany and ethnopharmacology of a medicinal plant complex in the Iberian Peninsula and the Balearic Islands.

PubMed

Obón, Concepción; Rivera, Diego; Verde, Alonso; Fajardo, José; Valdés, Arturo; Alcaraz, Francisco; Carvalho, Ana Maria

2012-10-31

Medicinal plant complexes of different species sharing vernacular names, morphological and aromatic characteristics and uses are common in traditional medicine of different cultures. A quantitative methodology as a tool for ethnopharmacological studies is presented for systematically analyzing morphological and therapeutic features shared by several species integrating such complexes. The aim of this paper is to apply a novel methodology to determine whether complexes are homogeneous and species within the complexes are completely interchangeable or not. Moreover, to find out if those species giving the name to the complex are also those which provide a large number of complex descriptors. For this purpose we study the complex of medicinal plant species which share the vernacular name "Árnica" in the Iberian Peninsula and the Balearic Islands, through the systematic recording of past and current local therapeutic uses and administration forms, plant-parts and localities where the different species are used. Being a newly introduced name in the region, "Árnica" offers an interesting field to study the genesis and dynamics of ethnopharmacological categories and medicinal plant complexes. A systematic review of the botanical, ethnobotanical and ethnopharmacological literature from 1895 to 2010 and of databases was performed in order to obtain information on the use of plants locally named as "Árnica" or with binomials that include the word "Árnica", in the Iberian Peninsula and the Balearic Islands. The "Árnica" complex includes 32 different plant species in the Iberian Peninsula, belonging to six families of Angiosperms, which partially share morphological characteristics and therapeutic properties. These are some of the most popular medicinal species of the Iberian Peninsula and are mainly used to treat inflammation, wounds, hematoma, and contusion. The vegetal materials are primarily macerated or decocted, and the methods of administration are plasters, washes

Effect of the Iberian pig line on dry-cured ham characteristics.

PubMed

Carrapiso, Ana I; García, Carmen

2008-10-01

The purpose of this study was to compare the characteristics (chemical composition, instrumental colour, sensory characteristics and acceptance) of dry-cured hams obtained form three genetic lines of Iberian pig (Censyra, Torbiscal and Entrepelado). The instrumental colour of fat was affected by the genetic line (b(∗), p=0.008; and h°, p=0.024), the Censyra group having the largest values. The genetic line did not affect the chemical composition of the subcutaneous fat and lean of the dry-cured hams or the instrumental colour of the lean. Data from a descriptive analysis showed that the only characteristic significantly affected was the toasted flavour (p=0.004), and juiciness and sweetness were slightly affected (p=0.062 and 0.061, respectively). In spite of the slight effect on the physical-chemical and sensory characteristics, acceptance was significantly different, Torbiscal hams having the highest scores.

The Iberian Peninsula corridor or cul-de-sac? Mammalian faunal change and possible routes of dispersal in the last 2 million years

NASA Astrophysics Data System (ADS)

O'Regan, Hannah J.

2008-11-01

The Iberian Peninsula is almost surrounded by the sea and is topographically and ecologically variable. These factors will have impacted on both the distribution and dispersal patterns of large mammals (including hominins) within Iberia, and are considered in detail in this paper. There are two routes of mammalian dispersal into Iberia: across the Pyrenees and across the Gibraltar Strait. With an increasing interest in the possible use of coastlines by early hominins the latter route has been the focus of much discussion. However, the arguments are limited by the relative lack of hominin remains and archaeology from the Early Pleistocene. This paper takes a wider perspective to hominin dispersals by examining what is known of the evolution and movements of other taxa in Iberia and how these may inform our understanding of the hominin fossil record. Beginning by briefly reviewing the present day and Pleistocene glacial and interglacial vegetation of Iberia, it then considers the large-mammal fauna. Particular attention is paid to the potential routes of movement for terrestrial animals in and out of the peninsula, and the evidence for each route is assessed. Iberia was a refuge for temperate species during the Quaternary glacial cycles and movements of Quaternary faunas are reviewed in the light of modern phylogeographic analyses and studies of fossil assemblages. Iberian faunas are highly variable, with some absences of otherwise widespread European animals, but cold-phase taxa such as reindeer and woolly rhinoceros did cross the Pyrenees. It seems that the large mountain ranges were less a barrier for the dispersal of these taxa than the line which today forms the limit of the summer drought. Iberia also provided the last refuge for extinct species such as the Neanderthals and endangered extant species such as the Iberian lynx.

New species of Dispio Hartman, 1951 and Streblospio Webster, 1879 (Polychaeta, Spionidae) from the coast of the Iberian Peninsula.

PubMed

Delgado-Blas, VÍctor Hugo; DÍaz-dÍaz, Óscar; ViÉitez, JosÉ M

2018-04-18

Re-assessment of spionid specimens from Iberian Peninsula initially assigned to Dispio uncinata Hartman, 1951 and Streblospio benedicti Webster, 1879 led to the recognition of two new species from the spionid genera Dispio and Streblospio from coasts around the Iberian Peninsula. Dispio elegans sp. nov. is characterised by having an oblanceolate-shaped prostomium. In addition, the first two notopodial postchaetal lamellae are serrated with digitiform papillae, the anterior neuropodial lamellae are smooth; all branchiae are almost completely fused to the notopodial lamellae, but with the tips free; the notochaetae on chaetiger 1 are smooth, alimbate capillaries; the ventral chaetae located in the position of the sabre chaetae on chaetigers 1-2 are smooth, alimbate capillaries, but becoming granulated on chaetiger 3; and the middle and posterior chaetigers are granulated and reticulated. Streblospio padventralis sp. nov. is characterized by lacking dorsal papillae between the branchiae of chaetiger 1; the hooks have 4-5 pairs of small teeth; sabre chaetae are present from chaetiger 3; the pygidium has two ventral lappets; and brooding structures are present in the coelomic cavities. We suggest raising the status of Streblospio benedicti japonica Imajima, 1990 to full species level as S. japonica Imajima, 1990. A key for Streblospio species is provided.

Root iron uptake efficiency of Ulmus laevis and U. minor and their distribution in soils of the Iberian Peninsula

PubMed Central

Venturas, Martin; Fernández, Victoria; Nadal, Paloma; Guzmán, Paula; Lucena, Juan J.; Gil, Luis

2014-01-01

The calcifuge and calcicole character of wild plants has been related to nutrient availability shortages, including iron (Fe)-deficiency. Surprisingly, just a few studies examined the relation between root Fe uptake and plant distribution in different soil types. We assessed the root Fe acquisition efficiency of two Ulmus species with calcareous (Ulmus minor) and siliceous (U. laevis) soil distribution patterns in the Iberian Peninsula. Seedlings of both elm species were grown hydroponically with different Fe concentrations during 6 weeks. Plant physiological responses to Fe-limiting conditions were evaluated as were the ferric reductase activity and proton (H+) extrusion capacity of the roots. Iron deprived elm seedlings of both species were stunted and suffered severe Fe-chlorosis symptoms. After Fe re-supply leaf chlorophyll concentrations rose according to species-dependent patterns. While U. minor leaves and seedlings re-greened evenly, U. laevis did so along the nerves of new growing leaves. U. minor had a higher root ferric reductase activity and H+-extrusion capability than U. laevis and maintained a better nutrient balance when grown under Fe-limiting conditions. The two elm species were found to have different Fe acquisition efficiencies which may be related to their natural distribution in calcareous and siliceous soils of the Iberian Peninsula. PMID:24723927

Are the Pyrenees a barrier for the transport of birch (Betula) pollen from Central Europe to the Iberian Peninsula?

PubMed

Izquierdo, Rebeca; Alarcón, Marta; Mazón, Jordi; Pino, David; De Linares, Concepción; Aguinagalde, Xabier; Belmonte, Jordina

2017-01-01

This work provides a first assessment of the possible barrier effect of the Pyrenees on the atmospheric transport of airborne pollen from Europe to the North of the Iberian Peninsula. Aerobiological data recorded in three Spanish stations located at the eastern, central and western base of the Pyrenees in the period 2004-2014 have been used to identify the possible long range transport episodes of Betula pollen. The atmospheric transport routes and the origin regions have been established by means of trajectory analysis and a source receptor model. Betula pollen outbreaks were associated with the meteorological scenario characterized by the presence of a high-pressure system overm over Morocco and Southern Iberian Peninsula. France and Central Europe have been identified as the probable source areas of Betula pollen that arrives to Northern Spain. However, the specific source areas are mainly determined by the particular prevailing atmospheric circulation of each location. Finally, the Weather Research and Forecasting model highlighted the effect of the orography on the atmospheric transport patterns, showing paths through the western and easternmost lowlands for Vitoria-Gasteiz and Bellaterra respectively, and the direct impact of air flows over Vielha through the Garona valley. Copyright © 2016 Elsevier B.V. All rights reserved.

Feline Leukemia Virus and Other Pathogens as Important Threats to the Survival of the Critically Endangered Iberian Lynx (Lynx pardinus)

PubMed Central

Meli, Marina L.; Cattori, Valentino; Martínez, Fernando; López, Guillermo; Vargas, Astrid; Simón, Miguel A.; Zorrilla, Irene; Muñoz, Alvaro; Palomares, Francisco; López-Bao, Jose V.; Pastor, Josep; Tandon, Ravi; Willi, Barbara; Hofmann-Lehmann, Regina; Lutz, Hans

2009-01-01

Background The Iberian lynx (Lynx pardinus) is considered the most endangered felid species in the world. In order to save this species, the Spanish authorities implemented a captive breeding program recruiting lynxes from the wild. In this context, a retrospective survey on prevalence of selected feline pathogens in free-ranging lynxes was initiated. Methodology/ Principal Findings We systematically analyzed the prevalence and importance of seven viral, one protozoan (Cytauxzoon felis), and several bacterial (e.g., hemotropic mycoplasma) infections in 77 of approximately 200 remaining free-ranging Iberian lynxes of the Doñana and Sierra Morena areas, in Southern Spain, between 2003 and 2007. With the exception of feline immunodeficiency virus (FIV), evidence of infection by all tested feline pathogens was found in Iberian lynxes. Fourteen lynxes were feline leukemia virus (FeLV) provirus-positive; eleven of these were antigenemic (FeLV p27 positive). All 14 animals tested negative for other viral infections. During a six-month period in 2007, six of the provirus-positive antigenemic lynxes died. Infection with FeLV but not with other infectious agents was associated with mortality (p<0.001). Sequencing of the FeLV surface glycoprotein gene revealed a common origin for ten of the eleven samples. The ten sequences were closely related to FeLV-A/61E, originally isolated from cats in the USA. Endogenous FeLV sequences were not detected. Conclusions/Significance It was concluded that the FeLV infection most likely originated from domestic cats invading the lynx's habitats. Data available regarding the time frame, co-infections, and outcome of FeLV-infections suggest that, in contrast to the domestic cat, the FeLV strain affecting the lynxes in 2007 is highly virulent to this species. Our data argue strongly for vaccination of lynxes and domestic cats in and around lynx's habitats in order to prevent further spread of the virus as well as reduction the domestic cat

Evidence for the persistence of the land planarian species Microplana terrestris (Müller, 1774) (Platyhelminthes, Tricladida) in microrefugia during the Last Glacial Maximum in the northern section of the Iberian Peninsula.

PubMed

Álvarez-Presas, Marta; Mateos, Eduardo; Vila-Farré, Miquel; Sluys, Ronald; Riutort, Marta

2012-09-01

The land planarian species Microplana terrestris (Müller, 1774), shows a wide distribution in the north of the Iberian Peninsula, where mature humid forests can be found. Since most terrestrial planarians require the presence and good condition of wet forests to survive, a parallel evolution of the taxon and its habitat might be expected. Performing molecular analyses (mitochondrial cytochrome oxidase I and nuclear ITS-1 genes) we estimated the demography and biogeographic history of the species in that region. Our results show the species to present levels of genetic diversity likely originating before the Pleistocene. However, it presents a genetic structure that presumably resulted from its survival in various refugees during the Pleistocene glacial cycles. The two main genetic groups, present on the Iberian Peninsula, seem to have different origins: the western one being of Iberian origin, while the eastern group may have been the result of a re-colonization from the north. In both cases, their biogeographical history mirrors their habitat range movements, reinforcing the phylogeographical hypothesis put forward for its preferred habitat, i.e. humid forests. Copyright © 2012 Elsevier Inc. All rights reserved.

Implantation ability of the potential probiotic strain, Lactobacillus reuteri PL519, in "Salchichón," a traditional Iberian dry fermented sausage.

PubMed

Ruiz-Moyano, Santiago; Martín, Alberto; Benito, María José; Aranda, Emilio; Casquete, Rocío; Córdoba, María de Guia

2011-01-01

The purpose of this study was to investigate the potential of incorporating the probiotic L. reuteri PL519 into the manufacturing of Iberian dry fermented sausages, and to observe its effect on the sensory properties of these meat products. Specific polymerase chain reaction (PCR) was carried out to detect the presence of probiotic strain at high counts in the inoculated sausages. Changes due to probiotic inoculation on physicochemical parameters were determined and the impact on sensory quality evaluated. Dry fermented sausages inoculated with L. reuteri PL519 may be considered as functional products according to the counts of this strain found at the end of processing. Inoculation with L. reuteri PL519 increased the amount of acetic acid, protein, and lipid degradation products in dry fermented sausages. The differences observed in the descriptive sensorial analysis corresponded, however, to a little impact on overall acceptability since no significant changes were found between the control and L. reuteri PL519 batch in the hedonic test. Processing and marketing of Iberian dry fermented sausages with functional characteristics. © 2011 Institute of Food Technologists®

The "Prediflood" database of historical floods in Catalonia (NE Iberian Peninsula) AD 1035-2013, and its potential applications in flood analysis

NASA Astrophysics Data System (ADS)

Barriendos, M.; Ruiz-Bellet, J. L.; Tuset, J.; Mazón, J.; Balasch, J. C.; Pino, D.; Ayala, J. L.

2014-07-01

"Prediflood" is a database of historical floods occurred in Catalonia (NE Iberian Peninsula), between 10th Century and 21th Century. More than 2700 flood cases are catalogued, and more than 1100 flood events. This database contains information acquired under modern historiographical criteria and it is, therefore, apt to be used in multidisciplinary flood analysis techniques, as meteorological or hydraullic reconstructions.

THE IBEX RIBBON AND THE PICKUP ION RING STABILITY IN THE OUTER HELIOSHEATH. I. THEORY AND HYBRID SIMULATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Florinski, V.; Heerikhuisen, J.; Niemiec, J.

2016-08-01

The nearly circular band of energetic neutral atom emission dominating the field of view of the Interplanetary Boundary Explorer ( IBEX ) satellite, is most commonly attributed to the effect of charge exchange of secondary pickup ions (PUIs) gyrating about the magnetic field in the outer heliosheath and the interstellar space beyond. Several models for the PUI dynamics of this mechanism have been proposed, each requiring either strong or weak scattering of the initial pitch angle. Conventional wisdom states that ring distributions tend to generate waves and scatter onto a shell on timescales too short for charge exchange to occur.more » We performed a careful study of ring and thin shell proton distribution stability using theoretical tools and hybrid plasma simulations. We show that the kinetic behavior of a freshly injected proton ring is a far more complicated process than previously thought. In the presence of a warm Maxwellian core, narrower rings could be more stable than broader toroidal distributions. The scattered rings possess a fine structure that can only be revealed using very large numbers of macroparticles in a simulation. It is demonstrated that a “stability gap” in ring temperature exists where the protons could retain large gyrating anisotropies for years, and the wave activity could remain below the level of the ambient magnetic fluctuations in interstellar space. In the directions away from the ribbon, however, a partial shell distribution is more likely to be unstable, leading to significant scattering into one hemisphere in velocity space. The process is accompanied by turbulence production, which is puzzling given the very low level of magnetic fluctuations measured in the outer heliosheath by Voyager 1 .« less

Taxonomy, distribution and ecology of the order Phyllodocida (Annelida, Polychaeta) in deep-sea habitats around the Iberian margin

NASA Astrophysics Data System (ADS)

Ravara, Ascensão; Ramos, Diana; Teixeira, Marcos A. L.; Costa, Filipe O.; Cunha, Marina R.

2017-03-01

The polychaetes of the order Phyllodocida (excluding Nereidiformia and Phyllodociformia incertae sedis) collected from deep-sea habitats of the Iberian margin (Bay of Biscay, Horseshoe continental rise, Gulf of Cadiz and Alboran Sea), and Atlantic seamounts (Gorringe Bank, Atlantis and Nameless) are reported herein. Thirty-six species belonging to seven families - Acoetidae, Pholoidae, Polynoidae, Sigalionidae, Glyceridae, Goniadidae and Phyllodocidae, were identified. Amended descriptions and/or new illustrations are given for the species Allmaniella setubalensis, Anotochaetonoe michelbhaudi, Lepidasthenia brunnea and Polynoe sp. Relevant taxonomical notes are provided for other seventeen species. Allmaniella setubalensis, Anotochaetonoe michelbhaudi, Harmothoe evei, Eumida longicirrata and Glycera noelae, previously known only from their type localities were found in different deep-water places of the studied areas and constitute new records for the Iberian margin. The geographic distributions and the bathymetric range of thirteen and fifteen species, respectively, are extended. The morphology-based biodiversity inventory was complemented with DNA sequences of the mitochondrial barcode region (COI barcodes) providing a molecular tag for future reference. Twenty new sequences were obtained for nine species in the families Acoetidae, Glyceridae and Polynoidae and for three lineages within the Phylodoce madeirensis complex (Phyllodocidae). A brief analysis of the newly obtained sequences and publicly available COI barcode data for the genera herein reported, highlighted several cases of unclear taxonomic assignments, which need further study.

Iberian Pyrite Belt Subsurface Life (IPBSL), a drilling project in a geochemical Mars terrestrial analogue

NASA Astrophysics Data System (ADS)

Amils, R.; Fernández-Remolar, D. C.; Parro, V.; Manfredi, J. A.; Timmis, K.; Oggerin, M.; Sánchez-Román, M.; López, F. J.; Fernández, J. P.; Omoregie, E.; Gómez-Ortiz, D.; Briones, C.; Gómez, F.; García, M.; Rodríguez, N.; Sanz, J. L.

2012-09-01

Iberian Pyrite Belt Subsurface Life (IPBSL) is a drilling project specifically designed to characterize the subsurface ecosystems operating in the Iberian Pyrite Belt (IPB), in the area of Peña de Hierro, and responsible of the extreme acidic conditions existing in the Rio Tinto basin [1]. Rio Tinto is considered a good geochemical terrestrial analogue of Mars [2, 3]. A dedicated geophysical characterization of the area selected two drilling sites (4) due to the possible existence of water with high ionic content (low resistivity). Two wells have been drilled in the selected area, BH11 and BH10, of depths of 340 and 620 meters respectively, with recovery of cores and generation of samples in anaerobic and sterile conditions. Preliminary results showed an important alteration of mineral structures associated with the presence of water, with production of expected products from the bacterial oxidation of pyrite (sulfates and ferric iron). Ion chromatography of water soluble compounds from uncontaminated samples showed the existence of putative electron donors (ferrous iron, nitrite in addition of the metal sulfides), electron acceptors (sulfate, nitrate, ferric iron) as well as variable concentration of metabolic organic acids (mainly acetate, formate, propionate and oxalate), which are strong signals of the presence of active subsurface ecosystem associated to the high sulfidic mineral content of the IPB. The system is driven by oxidants that appear to be provided by the rock matrix, only groundwater is needed to launch microbial metabolism. The geological, geomicrobiological and molecular biology analysis which are under way, should allow the characterization of this ecosystem of paramount interest in the design of an astrobiological underground Mars exploration mission in the near future.

Crustal structure of the North Iberian continental margin from seismic refraction/wide-angle reflection profiles

NASA Astrophysics Data System (ADS)

Ruiz, M.; Díaz, J.; Pedreira, D.; Gallart, J.; Pulgar, J. A.

2017-10-01

The structure and geodynamics of the southern margin of the Bay of Biscay have been investigated from a set of 11 multichannel seismic reflection profiles, recorded also at wide angle offsets in an onshore-offshore network of 24 OBS/OBH and 46 land sites. This contribution focuses on the analysis of the wide-angle reflection/refraction data along representative profiles. The results document strong lateral variations of the crustal structure along the margin and provide an extensive test of the crustal models previously proposed for the northern part of the Iberian Peninsula. Offshore, the crust has a typical continental structure in the eastern tip of the bay, which disappears smoothly towards the NW to reach crustal thickness close to 10 km at the edge of the studied area ( 45°N, 6°W). The analysis of the velocity-depth profiles, altogether with additional information provided by the multichannel seismic data and magnetic surveys, led to the conclusion that the crust in this part of the bay should be interpreted as transitional from continental to oceanic. Typical oceanic crust has not been imaged in the investigated area. Onshore, the new results are in good agreement with previous results and document the indentation of the Bay of Biscay crust into the Iberian crust, forcing its subduction to the North. The interpreted profiles show that the extent of the southward indentation is not uniform, with an Alpine root less developed in the central and western sector of the Basque-Cantabrian Basin. N-S to NE-SW transfer structures seem to control those variations in the indentation degree.

The Contribution of Vegetation and Landscape Configuration for Predicting Environmental Change Impacts on Iberian Birds

PubMed Central

Triviño, Maria; Thuiller, Wilfried; Cabeza, Mar; Hickler, Thomas; Araújo, Miguel B.

2011-01-01

Although climate is known to be one of the key factors determining animal species distributions amongst others, projections of global change impacts on their distributions often rely on bioclimatic envelope models. Vegetation structure and landscape configuration are also key determinants of distributions, but they are rarely considered in such assessments. We explore the consequences of using simulated vegetation structure and composition as well as its associated landscape configuration in models projecting global change effects on Iberian bird species distributions. Both present-day and future distributions were modelled for 168 bird species using two ensemble forecasting methods: Random Forests (RF) and Boosted Regression Trees (BRT). For each species, several models were created, differing in the predictor variables used (climate, vegetation, and landscape configuration). Discrimination ability of each model in the present-day was then tested with four commonly used evaluation methods (AUC, TSS, specificity and sensitivity). The different sets of predictor variables yielded similar spatial patterns for well-modelled species, but the future projections diverged for poorly-modelled species. Models using all predictor variables were not significantly better than models fitted with climate variables alone for ca. 50% of the cases. Moreover, models fitted with climate data were always better than models fitted with landscape configuration variables, and vegetation variables were found to correlate with bird species distributions in 26–40% of the cases with BRT, and in 1–18% of the cases with RF. We conclude that improvements from including vegetation and its landscape configuration variables in comparison with climate only variables might not always be as great as expected for future projections of Iberian bird species. PMID:22216263

Kinematics of an oblique deformation front using paleomagnetic data; the Altomira-Loranca structures (Iberian Chain, Central Spain)

NASA Astrophysics Data System (ADS)

Valcarcel, M.

2013-05-01

Manoel Valcárcel1, 5, Ruth Soto2, Elisabet Beamud3, Belén Oliva-Urcia4 and Josep Anton Muñoz5 1 IGME, Departamento de Investigación y Prospección Geocientífica. C/ La Calera, 1, 28760 Tres Cantos; m.valcarcel@igme.es 2 IGME, Unidad de Zaragoza, C/ Manuel Lasala 44, 9 B, 50006 Zaragoza, Spain 3 Lab. Paleomagnetisme (CCiT UB-CSIC). ICT "Jaume Almera", Solé i Sabarís, s/n, 08028 Barcelona, Spain. 4 IPE-CSIC, Avda. Montañana 1005, 50059 Zaragoza, Spain 5 Grup Geodinàmica i Anàlisi de Conques, Universitat de Barcelona, Zona Universitària Pedralbes, 08028 Barcelona, Spain The Altomira and Loranca structures consist of a fold-and-thrust system detached on Triassic evaporites. They are oriented N-S to NNE-SSW and NNW-SSE at its northern and southern end, respectively, forming a subtle arc, oblique with respect to the general NW-SE trend of the Iberian Chain. The aim of this work is to characterize with paleomagnetic data the kinematic evolution of the the Altomira Range, located at the southwestern deformation front of the Iberian Chain, and of the structures within its associated piggy-back basin, the Loranca basin. This approach will also give clues regarding the primary and/or secondary origin of these structures to better characterize them in further studies (3D reconstruction and restoration, fault pattern). A total of 180 samples were obtained from 19 sites in Eocene, Oligocene and Miocene rocks (including clays, fine sandstones and limestones). They were analyzed by means of stepwise thermal demagnetization and subsequent measurement of the natural remanent magnetization (NRM). Although fold tests are not statistically significant, a primary origin of the magnetization is deduced by samples showing either normal or reverse polarity after bedding correction of the calculated characteristic components. Declinations of the site mean directions appear scattered after bedding correction suggesting differential vertical-axis rotations. Sites located at the

Studies on seasonal arthropod succession on carrion in the southeastern Iberian Peninsula.

PubMed

Arnaldos, M I; Romera, E; Presa, J J; Luna, A; García, M D

2004-08-01

A global study of the sarcosaprophagous community that occurs in the southeastern Iberian Peninsula during all four seasons is made for the first time, and its diversity is described with reference to biological indices. A total of 18,179 adults and, additionally, a number of preimaginal states were collected. The results for the main arthropod groups, and their diversity are discussed in relation to the season and decompositional stages. The results provide an extensive inventory of carrion-associated arthropods. An association between decomposition stages and more representative arthropod groups is established. With respect to the biological indices applied, Margalef's index shows that the diversity of the community increases as the state of decomposition advances, while Sorenson's quantitative index shows that the greatest similarities are between spring and summer on the one hand, and fall and winter, on the other.

The Atlantic-Mediterranean watershed, river basins and glacial history shape the genetic structure of Iberian poplars.

PubMed

Macaya-Sanz, D; Heuertz, M; López-de-Heredia, U; De-Lucas, A I; Hidalgo, E; Maestro, C; Prada, A; Alía, R; González-Martínez, S C

2012-07-01

Recent phylogeographic studies have elucidated the effects of Pleistocene glaciations and of Pre-Pleistocene events on populations from glacial refuge areas. This study investigates those effects in riparian trees (Populus spp.), whose particular features may convey enhanced resistance to climate fluctuations. We analysed the phylogeographic structure of 44 white (Populus alba), 13 black (Populus nigra) and two grey (Populus x canescens) poplar populations in the Iberian Peninsula using plastid DNA microsatellites and sequences. We also assessed fine-scale spatial genetic structure and the extent of clonality in four white and one grey poplar populations using nuclear microsatellites and we determined quantitative genetic differentiation (Q(ST) ) for growth traits in white poplar. Black poplar displayed higher regional diversity and lower differentiation than white poplar, reflecting its higher cold-tolerance. The dependence of white poplar on phreatic water was evidenced by strong differentiation between the Atlantic and Mediterranean drainage basins and among river basins, and by weaker isolation by distance within than among river basins. Our results suggest confinement to the lower river courses during glacial periods and moderate interglacial gene exchange along coastlines. In northern Iberian river basins, white poplar had lower diversity, fewer private haplotypes and larger clonal assemblies than in southern basins, indicating a stronger effect of glaciations in the north. Despite strong genetic structure and frequent asexual propagation in white poplar, some growth traits displayed adaptive divergence between drainage and river basins (Q(ST) >F(ST)), highlighting the remarkable capacity of riparian tree populations to adapt to regional environmental conditions. © 2012 Blackwell Publishing Ltd.

Building global and diffuse solar radiation series and assessing decadal trends in Girona (NE Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Calbó, Josep; González, Josep-Abel; Sanchez-Lorenzo, Arturo

2017-08-01

Measurement of solar radiation was initiated in Girona, northeast of the Iberian Peninsula, in the late 1980s. Initially, two pyranometers were installed, one of them equipped with a shadowband for measuring the diffuse component. Two other pyranometers currently exist, both ventilated and one of them shadowed, with a sphere, and a pyrheliometer for measuring direct radiation. Additional instruments for other shortwave and longwave components, clouds, and atmospheric aerosols have been installed in recent years. The station is subject to daily inspection, data are saved at high temporal resolution, and instruments are periodically calibrated, all in accordance with the directions of the Baseline Surface Radiation Network. The present paper describes how the entire series of global solar radiation (1987-2014) and diffuse radiation (1994-2014) were built, including the quality control process. Appropriate corrections to the diffuse component were made when a shadowband was employed to make measurements. Analysis of the series reveals that annual mean global irradiance presents a statistically significant increase of 2.5 W m-2 (1.4 %) decade-1 (1988-2014 period), mainly due to what occurs in summer (5.6 W m-2 decade-1). These results constitute the first assessment of solar radiation trends for the northeastern region of the Iberian Peninsula and are consistent with trends observed in the regional surroundings and also by satellite platforms, in agreement with the global brightening phenomenon. Diffuse radiation has decreased at -1.3 W m-2 (-2 %) decade-1 (1994-2014 period), which is a further indication of the reduced cloudiness and/or aerosol load causing the changes.

A comprehensive sensitivity analysis of the WRF model for air quality applications over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Borge, Rafael; Alexandrov, Vassil; José del Vas, Juan; Lumbreras, Julio; Rodríguez, Encarnacion

Meteorological inputs play a vital role on regional air quality modelling. An extensive sensitivity analysis of the Weather Research and Forecasting (WRF) model was performed, in the framework of the Integrated Assessment Modelling System for the Iberian Peninsula (SIMCA) project. Up to 23 alternative model configurations, including Planetary Boundary Layer schemes, Microphysics, Land-surface models, Radiation schemes, Sea Surface Temperature and Four-Dimensional Data Assimilation were tested in a 3 km spatial resolution domain. Model results for the most significant meteorological variables, were assessed through a series of common statistics. The physics options identified to produce better results (Yonsei University Planetary Boundary Layer, WRF Single-Moment 6-class microphysics, Noah Land-surface model, Eta Geophysical Fluid Dynamics Laboratory longwave radiation and MM5 shortwave radiation schemes) along with other relevant user settings (time-varying Sea Surface Temperature and combined grid-observational nudging) where included in a "best case" configuration. This setup was tested and found to produce more accurate estimation of temperature, wind and humidity fields at surface level than any other configuration for the two episodes simulated. Planetary Boundary Layer height predictions showed a reasonable agreement with estimations derived from routine atmospheric soundings. Although some seasonal and geographical differences were observed, the model showed an acceptable behaviour overall. Despite being useful to define the most appropriate setup of the WRF model for air quality modelling over the Iberian Peninsula, this study provides a general overview of WRF sensitivity and can constitute a reference for future mesoscale meteorological modelling exercises.

Symbolic use of marine shells and mineral pigments by Iberian Neandertals

PubMed Central

Zilhão, João; Angelucci, Diego E.; Badal-García, Ernestina; d’Errico, Francesco; Daniel, Floréal; Dayet, Laure; Douka, Katerina; Higham, Thomas F. G.; Martínez-Sánchez, María José; Montes-Bernárdez, Ricardo; Murcia-Mascarós, Sonia; Pérez-Sirvent, Carmen; Roldán-García, Clodoaldo; Vanhaeren, Marian; Villaverde, Valentín; Wood, Rachel; Zapata, Josefina

2010-01-01

Two sites of the Neandertal-associated Middle Paleolithic of Iberia, dated to as early as approximately 50,000 years ago, yielded perforated and pigment-stained marine shells. At Cueva de los Aviones, three umbo-perforated valves of Acanthocardia and Glycymeris were found alongside lumps of yellow and red colorants, and residues preserved inside a Spondylus shell consist of a red lepidocrocite base mixed with ground, dark red-to-black fragments of hematite and pyrite. A perforated Pecten shell, painted on its external, white side with an orange mix of goethite and hematite, was abandoned after breakage at Cueva Antón, 60 km inland. Comparable early modern human-associated material from Africa and the Near East is widely accepted as evidence for body ornamentation, implying behavioral modernity. The Iberian finds show that European Neandertals were no different from coeval Africans in this regard, countering genetic/cognitive explanations for the emergence of symbolism and strengthening demographic/social ones. PMID:20080653

Circulation patterns and wave climate along the coast of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Rasilla Álvarez, D.; García Codrán, J. C.

2010-09-01

Evidences of an active erosion (beach retreat, falling cliffs, damaged infrastructures) are observed in many coastal areas around the Iberian Peninsula. Morphogenetic coastal processes result from individual episodes of storminess that can accelerate or mitigate the expected impacts of the global rising trend of average sea levels. Thus, a good understanding of the local forcing processes is required in order to assess the impacts of future sea levels. The spatial and temporal variability of the wave climate along the cost of the Iberian Peninsula and their relationships with regional scale circulation patterns and local-scale winds are the main objectives of this contribution. The oceanographic data set consists of observed hourly data from 7 buoys disseminated along the Spanish coastline, and hindcasted 3-hourly analogous parameters (SIMAR 44 database), provided by Puertos del Estado. Sea level pressure, surface 10m U and V wind components gridded data were obtained from NCEP Reanalysis, while storm tracks and cyclone statistics were extracted from the CDC Map Room Climate Products Storm Track Data (http://www.cdc.noaa.gov/map/clim/st_data.html). The influence of the local conditions was highlighted comparing meteorological data from the buoys and synop reports from coastal stations. To explore the regional atmospheric mechanisms responsible for the wave variability, a regional Eulerian approach (a synoptic typing) were combined with a larger-scale Lagrangian method, based on the analysis of storm-tracks over the area. The synoptic catalogue was obtained following a well-known procedure that combines Principal Component Analysis (PCA) for reduction purposes and clustering (Ward plus K-means) to define the circulation types. As expected, rougher wave climate are observed along the northern and western coast of the Iberian Peninsula, open to the Atlantic storms. The Mediterranean shorelines experiences calmer conditions, although the Gulf of Lions, Catalonian coast

Upper-soil moisture inter-comparison from SMOS's products and land surface models over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Polcher, Jan; Barella-Ortiz, Anaïs; Aires, Filipe; Balsamo, Gianpaolo; Gelati, Emiliano; Rodríguez-Fernández, Nemesio

2015-04-01

Soil moisture is a key state variable of the hydrological cycle. It conditions runoff, infiltration and evaporation over continental surfaces, and is key for forecasting droughts and floods. It plays thus an important role in surface-atmosphere interactions. Surface Soil Moisture (SSM) can be measured by in situ measurements, by satellite observations or modelled using land surface models. As a complementary tool, data assimilation can be used to combine both modelling and satellite observations. The work presented here is an inter-comparison of retrieved and modelled SSM data, for the 2010 - 2012 period, over the Iberian Peninsula. The region has been chosen because its vegetation cover is not very dense and includes strong contrasts in the rainfall regimes and thus a diversity of behaviours for SSM. Furthermore this semi-arid region is strongly dependent on a good management of its water resources. Satellite observations correspond to the Soil Moisture and Ocean Salinity (SMOS) retrievals: the L2 product from an optimal interpolation retrieval, and 3 other products using Neural Network retrievals with different input information: SMOS time indexes, purely SMOS data, or addition of the European Advanced Scaterometer (ASCAT) backscattering, and the Moderate-Resolution Imaging Spectrometer (MODIS) surface temperature information. The modelled soil moistures have been taken from the ORCHIDEE (ORganising Carbon and Hydrology In Dynamic EcosystEms) and the HTESSEL (Hydrology-Tiled ECMWF Scheme for Surface Exchanges over Land) land surface models. Both models are forced with the same atmospheric conditions (as part of the Earth2Observe FP7 project) over the period but they represent the surface soil moisture with very different degrees of complexity. ORCHIDEE has 5 levels in the top 5 centimetres of soil while in HTESSEL this variable is part of the top soil moisture level. The two types of SMOS retrievals are compared to the model outputs in their spatial and temporal

The "Prediflood" database of historical floods in Catalonia (NE Iberian Peninsula) AD 1035-2013, and its potential applications in flood analysis

NASA Astrophysics Data System (ADS)

Barriendos, M.; Ruiz-Bellet, J. L.; Tuset, J.; Mazón, J.; Balasch, J. C.; Pino, D.; Ayala, J. L.

2014-12-01

"Prediflood" is a database of historical floods that occurred in Catalonia (NE Iberian Peninsula), between the 11th century and the 21st century. More than 2700 flood cases are catalogued, and more than 1100 flood events. This database contains information acquired under modern historiographical criteria and it is, therefore, suitable for use in multidisciplinary flood analysis techniques, such as meteorological or hydraulic reconstructions.

KSC-08pd3111

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3109

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3110

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3112

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

Setting new constrains on the age of crustal-scale extensional shear zone (Vivero fault): implications for the evolution of Variscan orogeny in the Iberian massif

NASA Astrophysics Data System (ADS)

Lopez-Sanchez, Marco A.; Marcos, Alberto; Martínez, Francisco J.; Iriondo, Alexander; Llana-Fúnez, Sergio

2015-06-01

The Vivero fault is crustal-scale extensional shear zone parallel to the Variscan orogen in the Iberian massif belt with an associated dip-slip movement toward the hinterland. To constrain the timing of the extension accommodated by this structure, we performed zircon U-Pb LA-ICP-MS geochronology in several deformed plutons: some of them emplaced syntectonically. The different crystallization ages obtained indicate that the fault was active at least between 303 ± 2 and 287 ± 3 Ma, implying a minimum tectonic activity of 16 ± 5 Ma along the fault. The onset of the faulting is established to have occurred later than 314 ± 2 Ma. The geochronological data confirm that the Vivero fault postdates the main Variscan deformation events in the NW of the Iberian massif and that the extension direction of the Late Carboniferous-Early Permian crustal-scale extensional shear zones along the Ibero-Armorican Arc was consistently perpendicular to the general arcuate trend of the belt in SW Europe.

Patterns of Exposure of Iberian Wolves (Canis lupus) to Canine Viruses in Human-Dominated Landscapes.

PubMed

Millán, Javier; López-Bao, José Vicente; García, Emilio J; Oleaga, Álvaro; Llaneza, Luis; Palacios, Vicente; de la Torre, Ana; Rodríguez, Alejandro; Dubovi, Edward J; Esperón, Fernando

2016-03-01

Wildlife inhabiting human-dominated landscapes is at risk of pathogen spill-over from domestic species. With the aim of gaining knowledge in the dynamics of viral infections in Iberian wolves (Canis lupus) living in anthropized landscapes of northern Spain, we analysed between 2010 and 2013 the samples of 54 wolves by serology and polymerase chain reaction (PCR) for exposure to four pathogenic canine viruses: canine distemper virus (CDV), canine parvovirus-2 (CPV), canine adenovirus 1 and 2 (CAV-1 and CAV-2) and canine herpesvirus. Overall, 76% of the studied wolves presented evidence of exposure to CPV (96% by HI, 66% by PCR) and 75% to CAV (75% by virus neutralization (VN), 76% by PCR, of which 70% CAV-1 and 6% CAV-2). This represents the first detection of CAV-2 infection in a wild carnivore. CPV/CAV-1 co-infection occurred in 51% of the wolves. The probability of wolf exposure to CPV was positively and significantly correlated with farm density in a buffer zone around the place where the wolf was found, indicating that rural dogs might be the origin of CPV infecting wolves. CPV and CAV-1 appear to be enzootic in the Iberian wolf population, which is supported by the absence of seasonal and inter-annual variations in the proportion of positive samples detected. However, while CPV may depend on periodical introductions by dogs, CAV-1 may be maintained within the wolf population. All wolves were negative for exposure to CDV (by VN and PCR) and CHV (by PCR). The absence of acquired immunity against CDV in this population may predispose it to an elevated rate of mortality in the event of a distemper spill-over via dogs.

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA

PubMed Central

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A.

2017-01-01

Abstract There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. PMID:28962023

The role of drought on wheat yield interannual variability in the Iberian Peninsula from 1929 to 2012.

PubMed

Páscoa, P; Gouveia, C M; Russo, A; Trigo, R M

2017-03-01

The production of wheat in the Iberian Peninsula is strongly affected by climate conditions being particularly vulnerable to interannual changes in precipitation and long-term trends of both rainfall and evapotranspiration. Recent trends in precipitation and temperature point to an increase in dryness in this territory, thus highlighting the need to understand the dependence of wheat yield on climate conditions. The present work aims at studying the relation between wheat yields and drought events in the Iberian Peninsula, using a multiscalar drought index, the standardized precipitation evapotranspiration index (SPEI), at various timescales. The effects of the occurrence of dry episodes on wheat yields were analyzed, on regional spatial scale for two subperiods (1929-1985 and 1986-2012). The results show that in western areas, wheat yield is positively affected by dryer conditions, whereas the opposite happens in eastern areas. The winter months have a bigger influence in the west while the east is more dependent on the spring and summer months. Moreover, in the period of 1986-2012, the simultaneous occurrence of low-yield anomalies and dry events reaches values close to 100 % over many provinces. Results suggest that May and June have a strong control on wheat yield, namely, for longer timescales (9 to 12 months). A shift in the dependence of wheat yields on climatic droughts is evidenced by the increase in the area with positive correlation and the decrease in area with negative correlation between wheat yields and SPEI, probably due to the increase of dry events.

Differences in gas exchange contribute to habitat differentiation in Iberian columbines from contrasting light and water environments.

PubMed

Jaime, R; Serichol, C; Alcántara, J M; Rey, P J

2014-03-01

During photosynthesis, respiration and transpiration, gas exchange occurs via the stomata and so plants face a trade-off between maximising photosynthesis while minimising transpiration (expressed as water use efficiency, WUE). The ability to cope with this trade-off and regulate photosynthetic rate and stomatal conductance may be related to niche differentiation between closely related species. The present study explored this as a possible mechanism for habitat differentiation in Iberian columbines. The roles of irradiance and water stress were assessed to determine niche differentiation among Iberian columbines via distinct gas exchange processes. Photosynthesis-irradiance curves (P-I curves) were obtained for four taxa, and common garden experiments were conducted to examine plant responses to water and irradiance stress, by measuring instantaneous gas exchange and plant performance. Gas exchange was also measured in ten individuals using two to four field populations per taxon. The taxa had different P-I curves and gas exchange in the field. At the species level, water stress and irradiance explained habitat differentiation. Within each species, a combination of irradiance and water stress explained the between-subspecies habitat differentiation. Despite differences in stomatal conductance and CO2 assimilation, taxa did not have different WUE under field conditions, which suggests that the environment equally modifies photosynthesis and transpiration. The P-I curves, gas exchange in the field and plant responses to experimental water and irradiance stresses support the hypothesis that habitat differentiation is associated with differences among taxa in tolerance to abiotic stress mediated by distinct gas exchange responses. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

First record of the Granulate Ambrosia Beetle, Xylosandrus crassiusculus (Coleoptera: Curculionidae, Scolytinae), in the Iberian Peninsula.

PubMed

Gallego, Diego; Lencina, José Luis; Mas, Hugo; Ceveró, Julia; Faccoli, Massimo

2017-06-06

The Granulate Ambrosia Beetle Xylosandrus crassiusculus, an alien species of Asian origin, was recorded for first time in the Iberian Peninsula. Many specimens were collected in October 2016 in the Valencia region (Spain) from infested carob trees. The species is included in the EPPO Alert List as causing serious damage in many Mediterranean regions. A key for the morphological identification of the Xylosandrus species occurring in Europe is also reported.

KSC-08pd3105

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- On the ramp on Vandenberg Air Force Base in California, the Orbital Sciences’ L-1011 aircraft is being prepared to receive the Pegasus XL rocket and NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

Spatial Distribution of Dorylaimid and Mononchid Nematodes from the Southeast Iberian Peninsula: Environmental Characterization of Chorotypes

PubMed Central

Liébanas, G.; Guerrero, P.; Martín-García, J.-M.; Peña-Santiago, R.

2004-01-01

The aim of this study was to determine the incidence of 18 environmental variables in the spatial distribution of 30 chorotypes (species groups with significantly similar distribution patterns) of dorylaimid and mononchid nematodes by means of logistic regression in a natural area in the southeastern Iberian Peninsula. Six variables (elevation, color chroma, clay content, nitrogen content, CaCO₃, and plant community associated) were the most important environmental factors that helped explain the distribution of chorotypes. The distribution of most chorotypes was characterized by some (one to three) environmental variables; only two chorotypes were characterized by five or more variables, and four have not been characterized. PMID:19262795

Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing.

PubMed

Yuan, Chao; Wang, Xiaolong; Geng, Rongqing; He, Xiaolin; Qu, Lei; Chen, Yulin

2013-07-28

MicroRNAs (miRNAs) are a large family of endogenous, non-coding RNAs, about 22 nucleotides long, which regulate gene expression through sequence-specific base pairing with target mRNAs. Extensive studies have shown that miRNA expression in the skin changes remarkably during distinct stages of the hair cycle in humans, mice, goats and sheep. In this study, the skin tissues were harvested from the three stages of hair follicle cycling (anagen, catagen and telogen) in a fibre-producing goat breed. In total, 63,109,004 raw reads were obtained by Solexa sequencing and 61,125,752 clean reads remained for the small RNA digitalisation analysis. This resulted in the identification of 399 conserved miRNAs; among these, 326 miRNAs were expressed in all three follicular cycling stages, whereas 3, 12 and 11 miRNAs were specifically expressed in anagen, catagen, and telogen, respectively. We also identified 172 potential novel miRNAs by Mireap, 36 miRNAs were expressed in all three cycling stages, whereas 23, 29 and 44 miRNAs were specifically expressed in anagen, catagen, and telogen, respectively. The expression level of five arbitrarily selected miRNAs was analyzed by quantitative PCR, and the results indicated that the expression patterns were consistent with the Solexa sequencing results. Gene Ontology and KEGG pathway analyses indicated that five major biological pathways (Metabolic pathways, Pathways in cancer, MAPK signalling pathway, Endocytosis and Focal adhesion) accounted for 23.08% of target genes among 278 biological functions, indicating that these pathways are likely to play significant roles during hair cycling. During all hair cycle stages of cashmere goats, a large number of conserved and novel miRNAs were identified through a high-throughput sequencing approach. This study enriches the Capra hircus miRNA databases and provides a comprehensive miRNA transcriptome profile in the skin of goats during the hair follicle cycle.

Characterization by volatile compounds of microbial deep spoilage in Iberian dry-cured ham.

PubMed

Martín, Alberto; Benito, María J; Aranda, Emilio; Ruiz-Moyano, Santiago; Córdoba, Juan J; Córdoba, María G

2010-08-01

In the present study, volatile compounds of spoiled dry-cured Iberian ham with deep spoilage or "bone taint" were analyzed and correlated with level of spoilage and the microorganisms detected. Volatile compounds extracted by a solid phase micro-extraction technique were assayed by gas chromatography/mass spectrometry. The spoiled hams were evaluated sensorially, and the correlations among volatile compounds, spoilage level, and microbial counts were studied. The spoiled hams had higher concentrations of hydrocarbons, alcohols, acids, esters, pyrazines, sulfur compounds, and other minor volatile compounds than unspoiled hams. The sensorial analysis showed that the spoilage level of hams correlated with several volatile compounds, most of them associated with Gram-positive catalase positive cocci and Enterobacteriaceae counts. Cyclic compounds such as cyclohexanone, some ethers, and pyrazines should be considered as indicators to monitor incipient microbial deep spoilage in the elaboration of this meat product.

A new high-resolution kinematic model for the southern North Atlantic region: the Iberian plate kinematics since the Late Cretaceous

NASA Astrophysics Data System (ADS)

Macchiavelli, Chiara; Vergés, Jaume; Schettino, Antonio; Fernández, Manel; Turco, Eugenio; Torné, Montserrat; Casciello, Emilio

2017-04-01

We present the first high-resolution kinematic model for the southern North Atlantic since the late Cretaceous, in order to constrain the Iberian kinematics during the last 83 Myr. Assessing the detailed movements of the Iberian plate is crucial to constrain the kinematics of the Western Mediterranean region and to better understand the Pyrenees and Betic - Rif orogenic systems evolution. The new plate motions model for the Iberia - North America plate pair is accompanied by a high-resolution isochron map for the southern North Atlantic region, resulting from a re-examination of 400 ship tracks and 3 aeromagnetic tracks in the NGDC data base for the area between the Azores triple junction and 46° N. We derive a well-constrained kinematic solution for the relative motion between an independent Iberia and North America from seafloor spreading data despite the short length of the magnetic lineations and the scarcity of large-offset transform faults and fracture zones. Accurate finite reconstruction poles for the Iberia - North America conjugate plate pair between the Late Cretaceous (Chron 34, 83.5 Ma) and the present day (Chron 2A, 2.58 Ma) are calculated on the basis of a set of 100 magnetic profiles through an iterative method. Euler poles and associated angles of rotation are computed as follow. An initial rotation pole is calculated using only magnetic anomaly crossings. The initial large uncertainty associated with the first determination is reduced by generating a set of synthetic fracture zones associated with the initial pole and using points sampled along these structures in conjunction with magnetic anomaly crossings to calculate a new Euler pole and associated confidence ellipse. This procedure is repeated n times, generating a sequence of improving approximate solutions and stopped when the solution become stable excluding solutions that were inconsistent with geological constraints. We used these results to build a comprehensive kinematic model for the

Allergenic pollen in the subdesert areas of the Iberian peninsula.

PubMed

Cariñanos, P; Galán, C; Alcázar, P; Domínguez, E

2000-01-01

The yearly distribution of Artemisia and Chenopodiaceae-Amaranthaceae, two of the most common types of pollen in a rural area located in the southeastern part of the Iberian peninsula, was studied over a 3-year period (1995-1997). The particular bioclimatic conditions of the area, such as its subdesert climate, extreme dryness and high mountain location (1,000 m above sea level), have led to the adaptation and abundance of these species in this area. They usually flower in the second half of the year, and are the main pollen types collected in the samples in that time period. The Artemisia pollen levels recorded are the highest in Spain, since there are several species in the area which flower at different times. Chenopodiaceae-Amaranthaceae pollen counts are also very high. The severity of both pollen types was also analyzed. The height of the sampler was taken into account because the quantities at human height can be considerably higher than those recorded at 20 m off the ground. It was concluded that both pollen types should be considered some of the main causes of allergy in this area.

Fire and bones: Bronze Age III in the North-Eastern Iberian Peninsula.

PubMed

Subirà, Maria Eulàlia; Ruiz, Jordi; Guardiola-Bufì, Marina

2011-06-01

Between the third millennium BP and the fifth century AD, there are numerous necropolises that house urns in the Iberian Peninsula. One example is the "Pi de la Lliura" (Vidreres, Girona). However, there is a dearth of research concerning these structures. The "Pi de la Lliura" housed 43 structures, which contained a total of 47 vessels with human remains. Of these 43 structures, 22 were totally or partially excavated at the laboratory. The evidence from the fragments indicates cremation at a temperature of 650-700 degrees C. Part of the cremated corpse was then deposited in an urn. One of the most unique characteristics of the necropolis is the high frequency of individuals younger than 20 years old. The mortality of sub-adults is high in any prehistoric necropolis, but it is even higher in a cremation necropolis. "Pi de la Lliura" is a very small necropolis, where corpses were treated similarly over a short period.

Trends of Rural Tropospheric Ozone at the Northwest of the Iberian Peninsula

PubMed Central

Saavedra, S.; Rodríguez, A.; Souto, J. A.; Casares, J. J.; Bermúdez, J. L.; Soto, B.

2012-01-01

Tropospheric ozone levels around urban and suburban areas at Europe and North America had increased during 80's–90's, until the application of NOx reduction strategies. However, as it was expected, this ozone depletion was not proportional to the emissions reduction. On the other hand, rural ozone levels show different trends, with peaks reduction and average increments; this different evolution could be explained by either emission changes or climate variability in a region. In this work, trends of tropospheric ozone episodes at rural sites in the northwest of the Iberian Peninsula were analyzed and compared to others observed in different regions of the Atlantic European coast. Special interest was focused on the air quality sites characterization, in order to guarantee their rural character in terms of air quality. Both episodic local meteorological and air quality measurements along five years were considered, in order to study possible meteorological influences in ozone levels, different to other European Atlantic regions. PMID:22649298

Trends of rural tropospheric ozone at the northwest of the Iberian Peninsula.

PubMed

Saavedra, S; Rodríguez, A; Souto, J A; Casares, J J; Bermúdez, J L; Soto, B

2012-01-01

Tropospheric ozone levels around urban and suburban areas at Europe and North America had increased during 80's-90's, until the application of NO(x) reduction strategies. However, as it was expected, this ozone depletion was not proportional to the emissions reduction. On the other hand, rural ozone levels show different trends, with peaks reduction and average increments; this different evolution could be explained by either emission changes or climate variability in a region. In this work, trends of tropospheric ozone episodes at rural sites in the northwest of the Iberian Peninsula were analyzed and compared to others observed in different regions of the Atlantic European coast. Special interest was focused on the air quality sites characterization, in order to guarantee their rural character in terms of air quality. Both episodic local meteorological and air quality measurements along five years were considered, in order to study possible meteorological influences in ozone levels, different to other European Atlantic regions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hlond, M.; Bzowski, M.; Moebius, E.

Post-launch boresight of the IBEX-Lo instrument on board the Interstellar Boundary Explorer (IBEX) is determined based on IBEX-Lo Star Sensor observations. Accurate information on the boresight of the neutral gas camera is essential for precise determination of interstellar gas flow parameters. Utilizing spin-phase information from the spacecraft attitude control system (ACS), positions of stars observed by the Star Sensor during two years of IBEX measurements were analyzed and compared with positions obtained from a star catalog. No statistically significant differences were observed beyond those expected from the pre-launch uncertainty in the Star Sensor mounting. Based on the star observations andmore » their positions in the spacecraft reference system, pointing of the IBEX satellite spin axis was determined and compared with the pointing obtained from the ACS. Again, no statistically significant deviations were observed. We conclude that no systematic correction for boresight geometry is needed in the analysis of IBEX-Lo observations to determine neutral interstellar gas flow properties. A stack-up of uncertainties in attitude knowledge shows that the instantaneous IBEX-Lo pointing is determined to within {approx}0.{sup 0}1 in both spin angle and elevation using either the Star Sensor or the ACS. Further, the Star Sensor can be used to independently determine the spacecraft spin axis. Thus, Star Sensor data can be used reliably to correct the spin phase when the Star Tracker (used by the ACS) is disabled by bright objects in its field of view. The Star Sensor can also determine the spin axis during most orbits and thus provides redundancy for the Star Tracker.« less

KSC-08pd3108

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- A closeup of Orbital Sciences’ Pegasus XL rocket for NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft as it is enroute to the ramp on Vandenberg Air Force Base in California. There, the rocket will be attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

Comparison of measured brightness temperatures from SMOS with modelled ones from ORCHIDEE and H-TESSEL over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Barella-Ortiz, Anaïs; Polcher, Jan; de Rosnay, Patricia; Piles, Maria; Gelati, Emiliano

2017-01-01

L-band radiometry is considered to be one of the most suitable techniques to estimate surface soil moisture (SSM) by means of remote sensing. Brightness temperatures are key in this process, as they are the main input in the retrieval algorithm which yields SSM estimates. The work exposed compares brightness temperatures measured by the SMOS mission to two different sets of modelled ones, over the Iberian Peninsula from 2010 to 2012. The two modelled sets were estimated using a radiative transfer model and state variables from two land-surface models: (i) ORCHIDEE and (ii) H-TESSEL. The radiative transfer model used is the CMEM. Measured and modelled brightness temperatures show a good agreement in their temporal evolution, but their spatial structures are not consistent. An empirical orthogonal function analysis of the brightness temperature's error identifies a dominant structure over the south-west of the Iberian Peninsula which evolves during the year and is maximum in autumn and winter. Hypotheses concerning forcing-induced biases and assumptions made in the radiative transfer model are analysed to explain this inconsistency, but no candidate is found to be responsible for the weak spatial correlations at the moment. Further hypotheses are proposed and will be explored in a forthcoming paper. The analysis of spatial inconsistencies between modelled and measured TBs is important, as these can affect the estimation of geophysical variables and TB assimilation in operational models, as well as result in misleading validation studies.

Geochemistry of rare earth elements in minesoils from São Domingos mining district (Iberian Pyrite Belt)

NASA Astrophysics Data System (ADS)

Delgado, Joaquin; Perez-Lopez, Rafael; Nieto, Jose Miguel; Ayora, Carles

2010-05-01

The São Domingos mine is one of the most emblematic mining districts in the lower part of the Guadiana River Basin (SW of Iberian Peninsula). It is located in Portugal (about 5 km from the Spanish border), in the northern sector of the Iberian Pyrite Belt (IPB), one of the largest metallogenetic provinces of massive sulphides in the world. Although mining activity has ceased at present, the large-scale exploitation of this deposit between the second half of the XIX century and the first half of the XX century, has favoured the production of enormous waste dumps, where oxidation of pyrite and associated sulphides is resulting in the production of acid mine drainage (AMD). Mining wastes, minesoils, and acid mine drainage have been analyzed for their major ions and rare earth elements (REE) with the aim of understanding the REE mobility during sulphide weathering so that lanthanoid series can be used both as a proxy for the extent of water-rock interaction and as a tool for identifying impacts of AMD on natural ecosystems. Chemical speciation of REE in extracts from minesoils indicates that REE sulphate complexes (mainly LnSO4+) are the primary aqueous form (60-90%), and free ionic species (Ln3+, 10-40%) are the next most abundant form of soil water-soluble fraction and controls the REE speciation model. The REE from this fraction have NASC-normalized patterns with middle-REE (MREE) enriched signature compared to the light-REE (LREE) and heavy-REE (HREE), showing convex MREE-signatures and convexity index values of +1.29 +/- 1.13. These results are consistent with the typical REE fractionation patterns reported for AMD. Poorly crystalline iron oxyhydroxysulphates act as a source of labile MREE by dissolution and/or desorption processes and could explain the MREE-enriched signatures in solution.

Evolutionary history of Lissotriton helveticus: multilocus assessment of ancestral vs. recent colonization of the Iberian Peninsula.

PubMed

Recuero, Ernesto; García-París, Mario

2011-07-01

The Pleistocene was characterized by climatic changes that greatly altered the distribution of organisms. Population extinctions, bottlenecks, isolation, range expansions and contractions were often associated with glaciations, leaving signatures in the spatial patterns of genetic diversity across species. Lissotriton helveticus belongs to a Pan-European lineage of newts that were strongly affected by glaciations and represent an excellent model to analyse the effect of generalized climatic changes in phylogeographic patterns. We studied the genetic diversity of the species using data from two mitochondrial and three nuclear genes analyzed in a Bayesian phylogenetic framework to investigate the historical processes shaping spatial patterns of genetic diversity. Mitochondrial haplotypes cluster in four different groups present in the Iberian Peninsula and of Pleistocene origin, probably by allopatric fragmentation. Nuclear genes present no obvious geographic structure patterns, suggesting gene flow and generalized incomplete lineage sorting. Populations north of the Pyrenees are closely related to those from northeastern Iberia, suggesting recent range expansion from this region. Historical demographic analyses indicate a demographic expansion starting about 100,000years ago and more recent population declines. Compared to other Lissotriton species, L. helveticus includes only relatively young genetic lineages, suggesting a Central European pre-Pleistocene distribution followed by complete extirpation of the species during glaciations in that area. Historical demographic trends in the Iberian Peninsula are reversed with respect to the more Mediterranean species Lissotriton boscai, indicating different responses of both species to climate changes. Diversity patterns among Lissotriton species seem to be defined by four main factors: ancestral distributions, colonization capabilities, interactions with other species and effective population sizes. Differences in these

Quercus pollen season dynamics in the Iberian peninsula: response to meteorological parameters and possible consequences of climate change.

PubMed

Garcia-Mozo, Herminia; Galan, Carmen; Jato, Victoria; Belmonte, Jordina; de la Guardia, Consuelo; Fernandez, Delia; Gutierrez, Montserrat; Aira, M; Roure, Joan; Ruiz, Luis; Trigo, Mar; Dominguez-Vilches, Eugenio

2006-01-01

The main characteristics of the Quercus pollination season were studied in 14 different localities of the Iberian Peninsula from 1992-2004. Results show that Quercus flowering season has tended to start earlier in recent years, probably due to the increased temperatures in the pre-flowering period, detected at study sites over the second half of the 20th century. A Growing Degree Days forecasting model was used, together with future meteorological data forecast using the Regional Climate Model developed by the Hadley Meteorological Centre, in order to determine the expected advance in the start of Quercus pollination in future years. At each study site, airborne pollen curves presented a similar pattern in all study years, with different peaks over the season attributable in many cases to the presence of several species. High pollen concentrations were recorded, particularly at Mediterranean sites. This study also proposes forecasting models to predict both daily pollen values and annual pollen emission. All models were externally validated using data for 2001 and 2004, with acceptable results. Finally, the impact of the highly-likely climate change on Iberian Quercus pollen concentration values was studied by applying RCM meteorological data for different future years, 2025, 2050, 2075 and 2099. Results indicate that under a doubled CO(2) scenario at the end of the 21st century Quercus pollination season could start on average one month earlier and airborne pollen concentrations will increase by 50 % with respect to current levels, with higher values in Mediterranean inland areas.

Curie Point Depth of the Iberian Peninsula and Surrounding Margins. A Thermal and Tectonic Perspective of its Evolution

NASA Astrophysics Data System (ADS)

Andrés, J.; Marzán, I.; Ayarza, P.; Martí, D.; Palomeras, I.; Torné, M.; Campbell, S.; Carbonell, R.

2018-03-01

In this work the thermal structure of the Iberian Peninsula is derived from magnetic data by calculating the bottom of the magnetization, assumed to be the Curie-point depth (CPD) isotherm, which accounts for the depth at which magnetite becomes paramagnetic (580°C). Comparison of the CPD with crustal thickness maps along with a heat flow map derived from the CPD provides new insights on the lithospheric thermal regime. Within Iberia, the CPD isotherm has thickness in the range of 17 to 29 km. This isotherm is shallow (<18 km) offshore, where the lithosphere is thinner. In continental Iberia, the NW Variscan domain presents a magnetic response that is most probably linked to thickening and later extension processes during the late Variscan Orogeny, which resulted in widespread crustal melting and emplacement of granites (in the Central Iberian Arc). The signature of the CPD at the Gibraltar Arc reveals a geometry consistent with the slab roll-back geodynamic model that shaped the western Mediterranean. In offshore areas, a broad extension of magnetized upper mantle is found. Serpentinization of the upper mantle, probably triggered in an extensional context, is proposed to account for the magnetic signal. The Atlantic margin presents up to 8 km of serpentinites, which, according to the identification of exhumed mantle, correlates with a hyperextended margin. The Mediterranean also presents generalized serpentinization up to 6 km in the Algerian Basin. Furthermore, a heat flow map and a Moho temperature map derived from the CPD are presented.

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.

PubMed

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A

2017-11-01

There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Morphogenesis and grain size variation of alluvial gold recovered in auriferous sediments of the Tormes Basin (Iberian Peninsula) using a simple correspondence analysis

NASA Astrophysics Data System (ADS)

Barrios, S.; Merinero, R.; Lozano, R.; Orea, I.

2015-12-01

With present techniques it is difficult to determine whether the gold particles present at fluvial placers have come from one or multiple sources. Knowledge of this would be useful in prospecting for larger gold deposits. The aim of the present work was to test the potential of a technique based on modern visual and classic statistical methods to determine the single or multisource origin of gold particles at different sites in the Tormes Basin (Central Iberian Zone of the Iberian Massif, Iberian Peninsula). This basin contains numerous lode and placer gold deposits that have been exploited since ancient times. Today, gold nuggets (usually associated with quartz, 0.2-6 g in weight, 0.53-3.74 cm long and mostly discoidal in shape and of intermediate roundness) can be recovered from the sediments of the upper reaches of the River Tormes. These nuggets, as well as small gold particles collected at three gravel pits from across the basin (all of which showed abrasion marks) were examined by optical and/or environmental scanning electron microscopy, and the differences in their dimensions and morphological features noted. Simple correspondence analysis of the sphericity and roundness of the nuggets and particles was used to morphologically classify the gold samples collected at each location. The gold nuggets were best classified as elongated rods of intermediate roundness. Surprisingly, the gold particles from the most upstream and downstream gravel pits were best described as discs/sub-discs of rounded appearance, while those from the intermediate gravel pit were discs of intermediate roundness. Analysis of the variance followed by the Tukey honest significant differences test revealed the particles from the most upstream gravel pit to be significantly more flattened and smaller. These were therefore transported further from their source than the particles collected at the other two pits. These results suggest that multiple sources of sedimentary gold exist in the

Sprinting performance of two Iberian fish: Luciobarbus bocagei and Pseudochondrostoma duriense in an open channel flume

USGS Publications Warehouse

Sanz-Ronda, Francisco Javier; Ruiz-Legazpi, Jorge; Bravo-Cordoba, Francisco Javier; Makrakis, Sergio; Castro-Santos, Theodore R.

2015-01-01

This paper presents sprinting data from Iberian barbel (Luciobarbus bocagei) and northern straight-mouth nase (Pseudochondrostoma duriense), volitionally swimming against high velocity flows (1.5, 2.5 and 3 m s−1) in an open channel flume. Swimming endurance and speed greatly exceeded previously published observations with both species attaining swim speeds >20 body lengths s−1. Flow velocity was the primary variable limiting the distance both species were able to traverse. Barbel swam greater distances than nase at higher flow velocities, with longer individuals attaining greater distances than smaller ones. The results challenge established fish passage guidelines, suggesting that in some cases these species are capable of passing much higher velocities than was previously believed.

Superposed buckle folding in the eastern Iberian Chain, Spain

NASA Astrophysics Data System (ADS)

Simón, José L.

2004-08-01

The Aliaga area (eastern Iberian Chain) shows large-scale examples of buckle superposition developed during Tertiary folding. In most cases, ENE-trending folds overprint earlier NNW-SSE-trending ones. The resulting structures are mapped, analysed, and genetically classified by comparison with analogue models described by several authors. The following types are found: standard Type 1 (1a: dome-and-basin structure, 1b: unequal-wavelength overprinted folds); modified Type 1 (1c: T-shaped 'joined' folds; 1d: T-shaped 'abutting' folds; 1e: L-shaped folds; 1f: 'snake-like' folds); standard Type 2 (2a: non-cylindrical buckling of earlier axial surfaces involving hinge replacement). Different superposed sets of flexural-slip striations record successive folding episodes in snake-like folds, and hinge replacement in the case of Type 2a superpositions. Types 1 and 2 apparently develop where the earlier folds have interlimb angles over and below 90°, respectively, which fits the results of analogue modelling and theoretical analysis by previous authors. Types 1b and 1d are associated with higher W1/W2 wavelength ratios than Types 1a and 1c. Other controlling factors are viscosity contrast and erosion processes. Specifically, erosion of competent limestone beds in the hinge zone of a NNW-SSE-trending anticline allowed the near-vertical eastern limb to be refolded into snake-like folds.

The volcanic-sedimentary sequence of the Lousal deposit, Iberian Pyrite Belt (Portugal)

NASA Astrophysics Data System (ADS)

Rosa, Carlos; Rosa, Diogo; Matos, Joao; Relvas, Jorge

2010-05-01

The Iberian Pyrite Belt (IPB) is a massive sulfide province that is located in the south of Portugal and Spain, and hosts more than 90 massive sulfide deposits that amount to more than 1850 million metric tonnes of sulfide ore (Tornos, 2006). The ore deposits size, vary from ~1Mt to >100Mt (e.g. Neves Corvo and Aljustrel in Portugal, and Rio Tinto and Tharsis in Spain). The ore deposits are hosted by a submarine sedimentary and volcanic, felsic dominated, succession that constitutes the Upper Devonian to Lower Carboniferous Volcanic and Sedimentary Complex (VSC). The VSC ranges in thickness from approximately 600 to 1300 m (Tornos 2006). The VSC overlies the Phyllite-Quartzite Group (PQ) (Upper Devonian, base unknown) and is overlain by the Baixo Alentejo Flysch Group (Lower to Upper Carboniferous). The Lousal massive sulfide deposit is located in the western part of the IPB and occurs mostly interbedded with black mudstone. The VSC sequence at Lousal mine consists of a mudstone and quartzite sequence (PQ Group) in the lower part of the succession, over which a thick sequence of rhyolitic lavas (>300 m) occurs. Above the rhyolitic lavas there is a thick sequence of black and grey mudstone that hosts the massive sulfide ore bodies, and a rhyolitic sill. The upper part of the VSC sequence consists of a thick mudstone interval that hosts two thick basaltic units, locally with pillows. The rhyolites have small coherent cores, locally with flow bands, that grade to surrounding massive clastic intervals, with large lateral extent. The clasts show jigsaw-fit arrangement in many places and have planar or curviplanar margins and locally are perlitic at the margin. The top contact of these units is in most locations not exposed, which makes difficult to interpret the mode of emplacement. However, the thick clastic intervals, above described, are in accordance with quenching of volcanic glass with abundant water and therefore indicate that quenching of the rhyolites was the

Use of a domestic Korean black goat (Capra hircus coreanae) with its chest crayon-harnessed in detecting estrus of Himalayan tahrs (Hemitragus jemlahicus)

PubMed Central

Yong, Hwanyul

2014-01-01

The reliability of a Korean black goat (Capra hircus coreanae) to detect estrus in Himalayan tahrs (Hemitragus jemlahicus) for an artificial breeding program was investigated. Estrus in six female Himalayan tahrs was synchronized using fluorogestone acetate (FGA) sponges. Thirteen days later, 200 IU of PMSG and 100 IU of hCG were injected before removing the sponges and simultaneously injecting 5 mg of PGF2α the next day. Penetration of the cervical canal and the thickness and location of red crayon marks were examined 40~43 h later. Two females treated with sponges containing 60 or 45 mg of FGA had estrogen levels of 8.7 and 11.1 pg/mL, respectively. No red marks were found on the backs of these two tahrs. The remaining females had higher levels of estradiol, and the red crayon marks were clearly shown. The cervical folds of these tahrs were readily penetrated and the insemination gun was smoothly inserted into the uterine body. In conclusion, a Korean domestic goat with its chest crayon-harnessed was successfully used to detect estrus of Himalayan tahrs. This technique might be utilized as a part of breeding programs for wild goats and avoid the need for a vasectomy of conspecific males. PMID:24690603

An initial comparative map of copy number variations in the goat (Capra hircus) genome

PubMed Central

2010-01-01

Background The goat (Capra hircus) represents one of the most important farm animal species. It is reared in all continents with an estimated world population of about 800 million of animals. Despite its importance, studies on the goat genome are still in their infancy compared to those in other farm animal species. Comparative mapping between cattle and goat showed only a few rearrangements in agreement with the similarity of chromosome banding. We carried out a cross species cattle-goat array comparative genome hybridization (aCGH) experiment in order to identify copy number variations (CNVs) in the goat genome analysing animals of different breeds (Saanen, Camosciata delle Alpi, Girgentana, and Murciano-Granadina) using a tiling oligonucleotide array with ~385,000 probes designed on the bovine genome. Results We identified a total of 161 CNVs (an average of 17.9 CNVs per goat), with the largest number in the Saanen breed and the lowest in the Camosciata delle Alpi goat. By aggregating overlapping CNVs identified in different animals we determined CNV regions (CNVRs): on the whole, we identified 127 CNVRs covering about 11.47 Mb of the virtual goat genome referred to the bovine genome (0.435% of the latter genome). These 127 CNVRs included 86 loss and 41 gain and ranged from about 24 kb to about 1.07 Mb with a mean and median equal to 90,292 bp and 49,530 bp, respectively. To evaluate whether the identified goat CNVRs overlap with those reported in the cattle genome, we compared our results with those obtained in four independent cattle experiments. Overlapping between goat and cattle CNVRs was highly significant (P < 0.0001) suggesting that several chromosome regions might contain recurrent interspecies CNVRs. Genes with environmental functions were over-represented in goat CNVRs as reported in other mammals. Conclusions We describe a first map of goat CNVRs. This provides information on a comparative basis with the cattle genome by identifying putative

Near-real-time processing of a ceilometer network assisted with sun-photometer data: monitoring a dust outbreak over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Cazorla, Alberto; Andrés Casquero-Vera, Juan; Román, Roberto; Guerrero-Rascado, Juan Luis; Toledano, Carlos; Cachorro, Victoria E.; Orza, José Antonio G.; Cancillo, María Luisa; Serrano, Antonio; Titos, Gloria; Pandolfi, Marco; Alastuey, Andres; Hanrieder, Natalie; Alados-Arboledas, Lucas

2017-10-01

The interest in the use of ceilometers for optical aerosol characterization has increased in the last few years. They operate continuously almost unattended and are also much less expensive than lidars; hence, they can be distributed in dense networks over large areas. However, due to the low signal-to-noise ratio it is not always possible to obtain particle backscatter coefficient profiles, and the vast number of data generated require an automated and unsupervised method that ensures the quality of the profiles inversions. In this work we describe a method that uses aerosol optical depth (AOD) measurements from the AERONET network that it is applied for the calibration and automated quality assurance of inversion of ceilometer profiles. The method is compared with independent inversions obtained by co-located multiwavelength lidar measurements. A difference smaller than 15 % in backscatter is found between both instruments. This method is continuously and automatically applied to the Iberian Ceilometer Network (ICENET) and a case example during an unusually intense dust outbreak affecting the Iberian Peninsula between 20 and 24 February 2016 is shown. Results reveal that it is possible to obtain quantitative optical aerosol properties (particle backscatter coefficient) and discriminate the quality of these retrievals with ceilometers over large areas. This information has a great potential for alert systems and model assimilation and evaluation.

Differentiation of yeasts growing on dry-cured Iberian ham by mitochondrial DNA restriction analysis, RAPD-PCR and their volatile compounds production.

PubMed

Andrade, M J; Rodríguez, M; Casado, E M; Bermúdez, E; Córdoba, J J

2009-09-01

The efficiency of mitochondrial DNA (mtDNA) restriction analysis, RAPD-PCR and volatile compounds analysis to differentiate yeast biotypes involved in flavour development of dry-cured Iberian ham throughout the ripening process is evaluated. For this purpose, 86 yeasts isolated from Iberian hams in the main ripening stages at different industries of the four Protected Designations of Origin of this product, were used. The combination of mtDNA restriction analysis and RAPD-PCR using the primer (GACA)4 showed a higher variability in the yeast species detected than obtained using only mtDNA restriction analysis. Only two species, Debaryomyces hansenii and Candida zeylanoides, were identified throughout the whole ripening process and a wide diversity of biotypes was found in these two species, with those of D. hansenii predominating. Clear differences between biotypes were detected in the generation of volatile compounds, with the biotype C2-2 of D. hansenii showing the highest concentrations of volatiles. The combined use of mtDNA restriction analysis and RAPD-PCR distinguishes yeast biotypes with different production of volatile compounds. In addition, analysis of the production profile of volatile compounds is needed to differentiate yeast strains of the same biotype recovered at different stages of ripening. Thus, the combination of these three methods could be very useful to select or monitor yeasts as starter cultures in dry-cured meat products.

Evidence of synsedimentary microbial activity and iron deposition in ferruginous crusts of the Late Cenomanian Utrillas Formation (Iberian Basin, central Spain)

NASA Astrophysics Data System (ADS)

García-Hidalgo, José F.; Elorza, Javier; Gil-Gil, Javier; Herrero, José M.; Segura, Manuel

2018-02-01

Ferruginous sandstones and crusts are prominent sedimentary features throughout the continental (braided)-coastal siliciclastic (estuarine-tidal) wedges of the Late Cenomanian Utrillas Formation in the Iberian Basin. Crust types recognized are: Ferruginous sandy crusts (Fsc) with oxides-oxyhydroxides (hematite and goethite) concentrated on sandstone tops presenting a fibro-radial internal structure reminding organic structures that penetrate different mineral phases, suggesting the existence of bacterial activity in crust development; Ferruginous muddy crusts (Fmc) consisting of wavy, laminated, microbial mats, being composed mainly of hematite. On the other hand, a more dispersed and broader mineralization included as Ferruginous sandstones with iron oxides and oxyhydroxides (hematite and goethite) representing a limited cement phase on these sediments. The presence of microbial remains, ferruginous minerals, Microbially-induced sedimentary structures, microbial laminites and vertebrate tracks preserved due to the presence of biofilms suggest firstly a direct evidence of syn-depositional microbial activity in these sediments; and, secondly, that iron accumulation and ferruginous crusts development occurred immediately after deposition of the host, still soft sediments. Ferruginous crusts cap sedimentary cycles and they represent the gradual development of hard substrate conditions, and the development of a discontinuity surface at the top of the parasequence sets, related to very low sedimentary rates; the overlying sediments record subsequent flooding of underlying shallower environments; crusts are, consequently, interpreted as boundaries for these higher-order cycles in the Iberian Basin.

A comparison of daily precipitation metrics downscaled using SDSM and WRF + WRFDA models over the Iberian Peninsula.

NASA Astrophysics Data System (ADS)

José González-Rojí, Santos; Wilby, Robert L.; Sáenz, Jon; Ibarra-Berastegi, Gabriel

2017-04-01

Downscaling via the Statistical DownScaling Model (SDSM) version 5.2 and two different configurations of the dynamical WRF model (with and without 3DVAR data assimilation) was evaluated for the estimation of daily precipitation over 21 sites across the Iberian Peninsula during the period 2010-2014. Six different strategies were used to calibrate the SDSM model. These options cover (1) use of NCEP/NCAR R1 Reanalysis and (2) ERA Interim data for downscaling predictor variables calibrated with data from periods (3) 1948-2009 (NCEP/NCAR R1) and (4) 1979-2009 (NCEP/NCAR R1 and ERA Interim). Additionally, for the ERA Interim case, two different grid resolutions have been used, (5) 2.5° and (6) 0.75°. On the other side, for the NCEP/NCAR R1 case, only the 2.5° resolution has been used. Configuring the SDSM model in this way allows testing the sensitivity of the results to different origins of the predictors, fit to different calibration periods and use of different reanalysis resolutions. On the other hand, ERA Interim data at the highest resolution was used as the initial/boundary conditions to run WRF simulations with a 15 km x 15 km horizontal resolution over the Iberian Peninsula, for two different configurations. The first experiment (N) was run using the same configuration typically used for numerical downscaling, with information being fed through the boundaries of the domain. The second experiment (D) was run using 3DVAR data assimilation at 00UTC, 06UTC, 12UTC and 18UTC. In both cases, WRF simulations were run over the period 2009-2014, using the first year (2009) as spin-up for the soil model. Results from the WRF N and D runs and comparable SDSM set up for the period 2010-2014 were evaluated using observations from ECA and E-OBS datasets. In each case, model skill was assessed using seven daily precipitation metrics (absolute mean, wet-day intensity, 90th percentile, maximum 5-day total, maximum number of consecutive dry days, fraction of total from heavy

Analysis of the convective timescale during the major floods in the NE Iberian Peninsula since 1871

NASA Astrophysics Data System (ADS)

Pino, David; Reynés, Artur; Mazon, Jordi; Carles Balasch, Josep; Lluis Ruiz-Bellet, Josep; Tuset, Jordi; Barriendos, Mariano; Castelltort, Xavier

2016-04-01

Floods are the most severe natural hazard in the western Mediterranean basin. They cause most of the damages and most of the victims. Some of the selected floods caused more than one hundred casualties each and a large quantity of damages in infrastructures. In a previous work (Balasch, et al., 2015), using the PREDIFLOOD database (Barriendos et al., 2014) we studied the atmospheric conditions that occurred during some of the most important floods occurred in the north-east of the Iberian Peninsula in the last centuries: 1874, 1875, 1894, 1897, 1898, 1901, 1907, 1913, 1919, 1932, 1937, 1940, 1962, 1963, 1977, 1994, 1996, and 2000. We analyzed the atmospheric synoptic situations at the time of each flood from the data provided by NOAA 20th Century Reanalysis and we compared it to the rainfall spatial distributions obtained with the hydrological modeling. In this work we enlarge the previous investigation by analyzing the evolution of a convective index proposed by Done et al. (2006) and modified by Molini et al. (2011). This index, called convective time scale, is obtained from the evolution of CAPE and is used to separate equilibrium and non-equilibrium convection. In the former, CAPE generated by large-scale processes is balanced by the consumption due to convection. In the second case, CAPE is created by large-scale processes over a long time and is rapidly consumed during outbreaks of convection. Both situations produced a totally different evolution of CAPE with low and approximately constant values in the first case and large and variable values in the second. Additionally, from this index it can be estimated the rainfall rate. We use data provided by NOAA 20th Century Reanalysis, to calculate the convective time scale and to analyze its evolution and horizontal distribution. We study the correspondence between the convective timescale, the season when the flood occurred, duration of the rainfall, and the specific peak flow rate of the flood. Finally, for the

Palaeostress perturbations near the El Castillo de las Guardas fault (SW Iberian Massif)

NASA Astrophysics Data System (ADS)

García-Navarro, Encarnación; Fernández, Carlos

2010-05-01

Use of stress inversion methods on faults measured at 33 sites located at the northwestern part of the South Portuguese Zone (Variscan Iberian Massif), and analysis of the basic dyke attitude at this same region, has revealed a prominent perturbation of the stress trajectories around some large, crustal-scale faults, like the El Castillo de las Guardas fault. The results are compared with the predictions of theoretical models of palaeostress deviations near master faults. According to this comparison, the El Castillo de las Guardas fault, an old structure that probably reversed several times its slip sense, can be considered as a sinistral strike-slip fault during the Moscovian. These results also point out the main shortcomings that still hinder a rigorous quantitative use of the theoretical models of stress perturbations around major faults: the spatial variation in the parameters governing the brittle behaviour of the continental crust, and the possibility of oblique slip along outcrop-scale faults in regions subjected to general, non-plane strain.

Acquired antibiotic resistance among wild animals: the case of Iberian Lynx (Lynx pardinus).

PubMed

Sousa, Margarida; Gonçalves, Alexandre; Silva, Nuno; Serra, Rodrigo; Alcaide, Eva; Zorrilla, Irene; Torres, Carmen; Caniça, Manuela; Igrejas, Gilberto; Poeta, Patrícia

2014-01-01

The selective pressure generated by the clinical misuse of antibiotics has been the major driving force leading to the emergence of antibiotic resistance among bacteria. Antibiotics or even resistant bacteria are released into the environment and contaminate the surrounding areas. Human and animal populations in contact with these sources are able to become reservoirs of these resistant organisms. Then, due to the convergence between habitats, the contact of wild animals with other animals, humans, or human sources is now more common and this leads to an increase in the exchange of resistance determinants between their microbiota. Indeed, it seems that wildlife populations living in closer proximity to humans have higher levels of antibiotic resistance. Now, the Iberian Lynx (Lynx pardinus) is a part of this issue, being suggested as natural reservoir of acquired resistant bacteria. The emerging public health concern regarding microbial resistance to antibiotics is becoming true: the bacteria are evolving and are now affecting unintentional hosts.

First report of Setaria tundra in roe deer (Capreolus capreolus) from the Iberian Peninsula inferred from molecular data: epidemiological implications.

PubMed

Angelone-Alasaad, Samer; Jowers, Michael J; Panadero, Rosario; Pérez-Creo, Ana; Pajares, Gerardo; Díez-Baños, Pablo; Soriguer, Ramón C; Morrondo, Patrocinio

2016-09-29

Filarioid nematode parasites are major health hazards with important medical, veterinary and economic implications. Recently, they have been considered as indicators of climate change. In this paper, we report the first record of Setaria tundra in roe deer from the Iberian Peninsula. Adult S. tundra were collected from the peritoneal cavity during the post-mortem examination of a 2 year-old male roe deer, which belonged to a private fenced estate in La Alcarria (Guadalajara, Spain). Since 2012, the area has suffered a high roe deer decline rate (75 %), for unknown reasons. Aiming to support the morphological identification and to determine the phylogenetic position of S. tundra recovered from the roe deer, a fragment of the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene from the two morphologically identified parasites was amplified, sequenced and compared with corresponding sequences of other filarioid nematode species. Phylogenetic analyses revealed that the isolate of S. tundra recovered was basal to all other formely reported Setaria tundra sequences. The presence of all other haplotypes in Northern Europe may be indicative of a South to North outbreak in Europe. This is the first report of S. tundra in roe deer from the Iberian Peninsula, with interesting phylogenetic results, which may have further implications in the epidemiological and genetic studies of these filarioid parasites. More studies are needed to explore the reasons and dynamics behind the rapid host/geographic expansion of the filarioid parasites in Europe.

Multiple imputation of rainfall missing data in the Iberian Mediterranean context

NASA Astrophysics Data System (ADS)

Miró, Juan Javier; Caselles, Vicente; Estrela, María José

2017-11-01

Given the increasing need for complete rainfall data networks, in recent years have been proposed diverse methods for filling gaps in observed precipitation series, progressively more advanced that traditional approaches to overcome the problem. The present study has consisted in validate 10 methods (6 linear, 2 non-linear and 2 hybrid) that allow multiple imputation, i.e., fill at the same time missing data of multiple incomplete series in a dense network of neighboring stations. These were applied for daily and monthly rainfall in two sectors in the Júcar River Basin Authority (east Iberian Peninsula), which is characterized by a high spatial irregularity and difficulty of rainfall estimation. A classification of precipitation according to their genetic origin was applied as pre-processing, and a quantile-mapping adjusting as post-processing technique. The results showed in general a better performance for the non-linear and hybrid methods, highlighting that the non-linear PCA (NLPCA) method outperforms considerably the Self Organizing Maps (SOM) method within non-linear approaches. On linear methods, the Regularized Expectation Maximization method (RegEM) was the best, but far from NLPCA. Applying EOF filtering as post-processing of NLPCA (hybrid approach) yielded the best results.

Changes in present and future circulation types frequency in northwest Iberian Peninsula.

PubMed

Lorenzo, María N; Ramos, Alexandre M; Taboada, Juan J; Gimeno, Luis

2011-01-21

The aim of the work described herein was to study projection scenarios in order to find changes in the synoptic variability of the northwest Iberian Peninsula in the 21st century. To this end, we investigated the changes in the frequency of the different circulation types computed for the study area using three different models used in the IPCC 4(th) assessment report. The circulation types were computed using the procedure known as Lamb circulation types. The control simulation for the late 20th century was evaluated objectively from the results obtained using data from the NCEP/NCAR reanalysis, as to evaluate the ability of the model to reproduce the present climate. We have compared not only seasonal mean sea level pressure fields but also the mean seasonal frequency of circulation types. The results for the end of the 21st century show a decrease in the frequency of cyclonic, W, and SW circulation types in the spring and summer months. This trend also appears in the autumn, with a concomitant increase in the anticyclonic types.

Changes in Present and Future Circulation Types Frequency in Northwest Iberian Peninsula

PubMed Central

Lorenzo, María N.; Ramos, Alexandre M.; Taboada, Juan J.; Gimeno, Luis

2011-01-01

The aim of the work described herein was to study projection scenarios in order to find changes in the synoptic variability of the northwest Iberian Peninsula in the 21st century. To this end, we investigated the changes in the frequency of the different circulation types computed for the study area using three different models used in the IPCC 4th assessment report. The circulation types were computed using the procedure known as Lamb circulation types. The control simulation for the late 20th century was evaluated objectively from the results obtained using data from the NCEP/NCAR reanalysis, as to evaluate the ability of the model to reproduce the present climate. We have compared not only seasonal mean sea level pressure fields but also the mean seasonal frequency of circulation types. The results for the end of the 21st century show a decrease in the frequency of cyclonic, W, and SW circulation types in the spring and summer months. This trend also appears in the autumn, with a concomitant increase in the anticyclonic types. PMID:21283703

The Genetic Legacy of Religious Diversity and Intolerance: Paternal Lineages of Christians, Jews, and Muslims in the Iberian Peninsula

PubMed Central

Adams, Susan M.; Bosch, Elena; Balaresque, Patricia L.; Ballereau, Stéphane J.; Lee, Andrew C.; Arroyo, Eduardo; López-Parra, Ana M.; Aler, Mercedes; Grifo, Marina S. Gisbert; Brion, Maria; Carracedo, Angel; Lavinha, João; Martínez-Jarreta, Begoña; Quintana-Murci, Lluis; Picornell, Antònia; Ramon, Misericordia; Skorecki, Karl; Behar, Doron M.; Calafell, Francesc; Jobling, Mark A.

2008-01-01

Most studies of European genetic diversity have focused on large-scale variation and interpretations based on events in prehistory, but migrations and invasions in historical times could also have had profound effects on the genetic landscape. The Iberian Peninsula provides a suitable region for examination of the demographic impact of such recent events, because its complex recent history has involved the long-term residence of two very different populations with distinct geographical origins and their own particular cultural and religious characteristics—North African Muslims and Sephardic Jews. To address this issue, we analyzed Y chromosome haplotypes, which provide the necessary phylogeographic resolution, in 1140 males from the Iberian Peninsula and Balearic Islands. Admixture analysis based on binary and Y-STR haplotypes indicates a high mean proportion of ancestry from North African (10.6%) and Sephardic Jewish (19.8%) sources. Despite alternative possible sources for lineages ascribed a Sephardic Jewish origin, these proportions attest to a high level of religious conversion (whether voluntary or enforced), driven by historical episodes of social and religious intolerance, that ultimately led to the integration of descendants. In agreement with the historical record, analysis of haplotype sharing and diversity within specific haplogroups suggests that the Sephardic Jewish component is the more ancient. The geographical distribution of North African ancestry in the peninsula does not reflect the initial colonization and subsequent withdrawal and is likely to result from later enforced population movement—more marked in some regions than in others—plus the effects of genetic drift. PMID:19061982

Millennial scale impact on the marine biogeochemical cycle of mercury from early mining on the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Serrano, O.; Martínez-Cortizas, A.; Mateo, M. A.; Biester, H.; Bindler, R.

2013-01-01

The high-resolution mercury record of a Posidonia oceanica mat in the northwest Mediterranean provides an unprecedented testimony of changes in environmental mercury (Hg) loading to the coastal marine environment over the past 4315 yr BP. The period reconstructed made it possible to establish tentative preanthropogenic background Hg levels for the area (6.8 ± 1.5 ng g-1 in bulk sediments). A small, but significant, anthropogenic Hg increase was identifiable by 2500 yr BP, in agreement with the beginning of intense mining in Spain. Changes in the record suggest four major periods of anthropogenic Hg pollution inputs to the Mediterranean: first, during the Roman Empire (2100-1800 yr BP); second, in the Late Middle Ages (970-650 yr BP); third, in the modern historical era (530-380 yr BP); and fourth, in the industrial period (last 250 years), with Hg concentrations two-, four-, five-, and tenfold higher than background concentrations, respectively. Hg from anthropogenic sources has dominated during the last millennium (increase from 12 to 100 ng g-1), which can be related to the widespread historical exploitation of ore resources on the Iberian Peninsula. The chronology of Hg concentrations in the mat archive, together with other Hg pollution records from the Iberian Peninsula, suggests regional-scale Hg transport and deposition and shows earlier marine Hg pollution than elsewhere in Europe. Moreover, the mat also records a higher number of historic contamination phases, in comparison with other natural archives, probably due to the fact that the bioaccumulating capacity of P. oceanica magnify environmental changes in Hg concentrations. In this study, we demonstrate the uniqueness of P. oceanica meadows as a long-term archive recording trends in Hg abundance in the marine coastal environment, as well as its potential role in the Mediterranean as a long-term Hg sink.

Is the current increase in fire recurrence causing a shift in the soil fertility of Iberian ecosystems?

NASA Astrophysics Data System (ADS)

Mayor, Ángeles G.; Keizer, Jan Jacob; González-Pelayo, Óscar; Valdecantos, Alejandro; Vallejo, Ramón; de Ruiter, Peter

2015-04-01

Since the mid of the last century fire recurrence has increased in the Iberian peninsula and the overall Mediterranean basin due to changes in land use and climate. The warmer and drier climate projected for this region will further increase the risk of wildfire occurrence and of increasing fire recurrence. Although the impact of wildfires on soil nutrient content in this region has been extensively studied, still few works have assessed this impact on the basis of fire recurrence. This study assesses the changes in soil nutrient status of two Iberian ecosystems, Várzea (N Portugal) and Valencia (E Spain), affected by different levels of fire recurrence and where short inter-fire periods have promoted a transition from pine woodlands to shrublands. Trends towards soil fertility loss with increasing fire recurrence (one, two, three or four fires in 37 years) were observed in the two study sites. The sites differed when soil fertility of areas burned several times were compared with long unburned references. In Valencia, overall soil fertility of the surface mineral soil was lower in areas burned two or three times than in long unburned areas, twenty and eight years after the last fire, respectively. On the contrary, total organic matter in Várzea was higher in burned than in unburned soils one year after the occurrence of one or four fires. However, a negative impact of fire was observed for integrated indicators of soil quality, such as hot-water carbon and potentially mineralizable nitrogen, suggesting that fire also had an adverse effect on substrate quality in Várzea. Our results suggest that the current trend of increasing fire recurrence in Southern Europe may result in losses or alterations of soil organic matter, particularly when fire promotes a transition from pine woodland to shrubland.

Characterization of Iberian turbid plumes by means of synoptic patterns obtained through MODIS imagery

NASA Astrophysics Data System (ADS)

Fernández-Nóvoa, D.; deCastro, M.; Des, M.; Costoya, X.; Mendes, R.; Gómez-Gesteira, M.

2017-08-01

Turbid plumes formed by the main Iberian rivers were analyzed and compared in order to determine similarities and differences among them. Five Atlantic rivers (Minho, Douro, Tagus, Guadiana and Guadalquivir) and one Mediterranean river (Ebro) were considered. Plume extension and turbidity were evaluated through synoptic patterns obtained by means of MODIS imagery over the period 2003-2014. River discharge showed to be the main forcing. In fact, the dependence of plume extension on runoff is moderate or high for all rivers, except for Ebro. In addition, most of river plumes adjust immediately to runoff fluctuations. Only the extension of Tagus and Guadalquivir plumes is lagged with respect to river runoff, due to the high residence time generated by their large estuaries. Wind is a secondary forcing, being only noticeable under high discharges. Actually, the dependence of plume extension on wind is moderate or high for all rivers, except Guadalquivir and Ebro. All the Atlantic rivers show the maximum (minimum) near- field plume extension under landward (oceanward) cross-shore winds. The opposite situation was observed for Ebro River. Tide is also a secondary forcing although less important than wind. Actually, the dependence of plume extension on tide is only high for Guadiana River. Nevertheless, all Atlantic river plumes still have some dependence on semidiurnal tidal cycle, they increase under low tides and decrease under high tides. In addition, Tagus River plume also depends on the fortnightly tidal cycle being larger during spring tides than during neap tides. This is due to particular shape of the estuary, where the river debouches into a semi-enclosed embayment connected to the Atlantic Ocean through a strait. Ebro River constitutes a particular case since it has a low dependence on runoff and wind and a negligible dependence on tide. In fact, its plume is mainly driven by the Liguro-Provençal coastal current. Guadalquivir River also shows some unique

47 annual records of allergenic fungi spore: predictive models from the NW Iberian Peninsula.

PubMed

Aira, M Jesus; Rodriguez-Rajo, F; Jato, Victoria

2008-01-01

An analysis was carried out of the atmospheric representivity of Cladosporium and Alternaria spores in the north-western Iberian Peninsula, registering mean annual concentrations in excess of 300,000 spores/m(3). During the main sporulation period, the highest average daily concentrations corresponded to Cladosporium herbarum type (1,197 spores/m(3)) while the highest daily value was 7,556 spores/m(3) (Cladosporium cladosporioides type). Alternaria only represents between 0.1-1% of the total spores identified. In these spore types, the intraday variation was more acute inland than along the coastline due to oceanic influence. In the predictive models proposed that use the meteorological parameters with which a higher correlation was obtained (mean and maximum temperature) as predictive variables, it was seen that the predicted values did not reveal any significant differences as compared to those observed in 2006, data that was only used for verification purposes.

Physiological variables explain mineral intake in Iberian red deer.

PubMed

Ceacero, Francisco; Landete-Castillejos, Tomás; García, Andrés J; Estévez, José A; Gallego, Laureano

2010-05-11

Foraging theory predicts that animals should be able to assess nutrient content of food sources and adjust their diet according to needs. As many minerals are essential nutrients, animals should be able to discriminate and consume the amount needed for each mineral. Although this has been proved for sodium and phosphorus, it is not clear if animals can discriminate among other essential minerals, and if they do so based on physiological needs. Requirements depend on sex, age, and physiological status, and thus usually vary greatly among individuals. Thus, if animals behave as optimal foragers of minerals, factors affecting individual physiological needs should also affect intake behaviour of each mineral. We tested this prediction in Iberian red deer. During two lactation periods a series of containers with different minerals, most of them diluted in salt, were offered to 59 adult hinds and their calves while consumption behaviour was recorded. Study animals were monitored weekly and milk production was assessed during the experiment. All the lactation variables influenced mineral consumption, and the effect differed for each mineral. Models explained a higher proportion of variability in calf than hind behaviour, reflecting probably a greater constraint as a result of growth needs. Thus, results show that deer can select mineral content in their diet and that selection is shaped by physiological effort as expected if consumption is driven by physiological needs. Copyright 2010 Elsevier Inc. All rights reserved.

Soil properties linked to Phytophthora cinnamomi presence and oak decline in Iberian dehesas

NASA Astrophysics Data System (ADS)

Moreno, G.; Vivas, M.; Pérez, A.; Cubera, E.; Madeira, M.; Solla, A.

2009-04-01

Dehesas cover about 3,100,000 ha in the Iberian Peninsula, and support an outstanding diversity of wildlife and flora endemisms. These open woodlands provide Spain and Portugal inhabitants with a high-quality food, derived from animal production, sustain rural population, and act as retardants of soil erosion and desertification, which are considered primary environmental concerns in the Mediterranean basin. Dehesas are considered examples of sustainable use, though in the last few decades intensive land use, imposed by a concomitant change in the technological and socio-economic conditions, and common agricultural policies threat their conservation. Soil compaction and erosion, oak regeneration failure, dieback of old-ageing stands, and loose of biodiversity are some of the most common threats. At the same time, a severe decline of Quercus ilex (Holm oak) has been reported since the 1990s in the southern Iberian Peninsula, and more recently in France, Italy, and Morocco. In the Iberian Peninsula, the decline has been mostly observed in dehesas, where a combination of factors, possibly acting in synergy, have been put forward to explain the disease. Severe drought episodes, flooding, and rapid fluctuations in soil water content have been reported as predisposing factors favoring tree invasion by bark borer insects and/or pathogenic fungi. It is mostly ignored to what extent decline is a natural or a man-induced process, and if it is associated to either basic, management-related soil properties, or both. To bring insight to this problem, extensive and integrative comparisons of some soil properties related to hydromorphism were initiated, comprising pairs of adjacent non-symptomatic and symptomatic Q. ilex trees. In 2008, 48 dehesa stands from western Spain (Cáceres), half of them located along stream banks and the other half located in slopes, were intensively studied. In each stand, soil and root samples were taken under 3 non-symptomatic (healthy) and 3

Female Iberian wall lizards prefer male scents that signal a better cell-mediated immune response.

PubMed

López, Pilar; Martín, José

2005-12-22

In spite of the importance of chemoreception in sexual selection of lizards, only a few studies have examined the composition of chemical signals, and it is unknown whether and how chemicals provide honest information. Chemical signals might be honest if there were a trade-off between sexual advertisement and the immune system. Here, we show that proportions of cholesta-5,7-dien-3-ol in femoral secretions of male Iberian wall lizards (Podarcis hispanica) were related to their T-cell-mediated immune response. Thus, only males with a good immune system may allocate higher amounts of this chemical to signalling. Furthermore, females selected scents of males with higher proportions of cholesta-5,7-dien-3-ol and lower proportions of cholesterol. Thus, females might base their mate choice on the males' quality as indicated by the composition of their chemical signals.

KSC-08pd3141

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3138

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins rolling for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3148

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins to taxi for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/CIV USAF/Daniel Liberotti

KSC-08pd3145

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3139

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins rolling for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3151

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3140

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB