Landscape connectivity for bobcat (Lynx rufus) and lynx (Lynx canadensis) in the Northeastern United States

PubMed Central

Levy, Daniel M.; Donovan, Therese; Mickey, Ruth; Howard, Alan; Vashon, Jennifer; Freeman, Mark; Royar, Kim; Kilpatrick, C. William

2018-01-01

Landscape connectivity is integral to the persistence of metapopulations of wide ranging carnivores and other terrestrial species. The objectives of this research were to investigate the landscape characteristics essential to use of areas by lynx and bobcats in northern New England, map a habitat availability model for each species, and explore connectivity across areas of the region likely to experience future development pressure. A Mahalanobis distance analysis was conducted on location data collected between 2005 and 2010 from 16 bobcats in western Vermont and 31 lynx in northern Maine to determine which variables were most consistent across all locations for each species using three scales based on average 1) local (15 minute) movement, 2) linear distance between daily locations, and 3) female home range size. The bobcat model providing the widest separation between used locations and random study area locations suggests that they cue into landscape features such as edge, availability of cover, and development density at different scales. The lynx model with the widest separation between random and used locations contained five variables including natural habitat, cover, and elevation—all at different scales. Shrub scrub habitat—where lynx’s preferred prey is most abundant—was represented at the daily distance moved scale. Cross validation indicated that outliers had little effect on models for either species. A habitat suitability value was calculated for each 30 m2 pixel across Vermont, New Hampshire, and Maine for each species and used to map connectivity between conserved lands within selected areas across the region. Projections of future landscape change illustrated potential impacts of anthropogenic development on areas lynx and bobcat may use, and indicated where connectivity for bobcats and lynx may be lost. These projections provided a guide for conservation of landscape permeability for lynx, bobcat, and species relying on similar habitats

Landscape connectivity for bobcat (Lynx rufus) and lynx (Lynx canadensis) in the Northeastern United States

USGS Publications Warehouse

Farrell, Laura E.; Levy, Daniel M.; Donovan, Therese M.; Mickey, Ruth M.; Howard, Alan; Vashon, Jennifer; Freeman, Mark; Royar, Kim; Kilpatrick, C. William

2018-01-01

Landscape connectivity is integral to the persistence of metapopulations of wide ranging carnivores and other terrestrial species. The objectives of this research were to investigate the landscape characteristics essential to use of areas by lynx and bobcats in northern New England, map a habitat availability model for each species, and explore connectivity across areas of the region likely to experience future development pressure. A Mahalanobis distance analysis was conducted on location data collected between 2005 and 2010 from 16 bobcats in western Vermont and 31 lynx in northern Maine to determine which variables were most consistent across all locations for each species using three scales based on average 1) local (15 minute) movement, 2) linear distance between daily locations, and 3) female home range size. The bobcat model providing the widest separation between used locations and random study area locations suggests that they cue into landscape features such as edge, availability of cover, and development density at different scales. The lynx model with the widest separation between random and used locations contained five variables including natural habitat, cover, and elevation—all at different scales. Shrub scrub habitat—where lynx’s preferred prey is most abundant—was represented at the daily distance moved scale. Cross validation indicated that outliers had little effect on models for either species. A habitat suitability value was calculated for each 30 m2 pixel across Vermont, New Hampshire, and Maine for each species and used to map connectivity between conserved lands within selected areas across the region. Projections of future landscape change illustrated potential impacts of anthropogenic development on areas lynx and bobcat may use, and indicated where connectivity for bobcats and lynx may be lost. These projections provided a guide for conservation of landscape permeability for lynx, bobcat, and species relying on similar habitats

Canada lynx-bobcat (Lynx canadensis x L. rufus) hybrids at the southern periphery of lynx range in Maine, Minnesota and New Brunswick

Treesearch

Jessica A. Homyack; Jennifer H. Vashon; Cade Libby; Edward L. Lindquist; Steve Loch; Donald F. McAlpine; Kristine L. Pilgrim; Michael K. Schwartz

2008-01-01

Hybridization between federally threatened Canada lynx (Lynx canadensis) and bobcat (L. rufus) was recently documented in the United States, but little is known regarding physical characteristics of hybrids compared to parent species. We report on the morphology and physical characteristics of five of seven Canada lynx-bobcat...

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA

PubMed Central

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A.

2017-01-01

Abstract There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. PMID:28962023

Occurrence of Thelazia callipaeda and Toxocara cati in an imported European lynx (Lynx lynx) in Japan.

PubMed

El-Dakhly, Khaled; Abo El-Hadid, Shawky; Shimizu, Hirofumi; El-Nahass, Shaymaa; Murai, Atsuko; Sakai, Hiroki; Yanai, Tokuma

2012-09-01

A necropsy was performed on an adult European lynx, Lynx lynx (Linnaeus, 1758), held in captivity until its death, to determine level of parasitism. Examination of the eyes revealed the oriental eyeworm, Thelazia callipaeda, in the conjunctival sac and the third eyelid of both eyes. The species was confirmed by location and morphology. Intact worms were fixed, mounted, and identified. Examination of the alimentary tract revealed the common ascaroid nematode, Toxocara cati. Species was confirmed by the arrow-like anterior end. One hundred and forty-one adult worms were collected. The presence of these nematodes indicated the importance of eliminating the contact of zoo animals with Amiota spp. vectors and to prevent contamination with the infective T. cati eggs.

Large-Scale Genetic Structuring of a Widely Distributed Carnivore - The Eurasian Lynx (Lynx lynx)

PubMed Central

Rueness, Eli K.; Naidenko, Sergei; Trosvik, Pål; Stenseth, Nils Chr.

2014-01-01

Over the last decades the phylogeography and genetic structure of a multitude of species inhabiting Europe and North America have been described. The flora and fauna of the vast landmasses of north-eastern Eurasia are still largely unexplored in this respect. The Eurasian lynx is a large felid that is relatively abundant over much of the Russian sub-continent and the adjoining countries. Analyzing 148 museum specimens collected throughout its range over the last 150 years we have described the large-scale genetic structuring in this highly mobile species. We have investigated the spatial genetic patterns using mitochondrial DNA sequences (D-loop and cytochrome b) and 11 microsatellite loci, and describe three phylogenetic clades and a clear structuring along an east-west gradient. The most likely scenario is that the contemporary Eurasian lynx populations originated in central Asia and that parts of Europe were inhabited by lynx during the Pleistocene. After the Last Glacial Maximum (LGM) range expansions lead to colonization of north-western Siberia and Scandinavia from the Caucasus and north-eastern Siberia from a refugium further east. No evidence of a Berinigan refugium could be detected in our data. We observed restricted gene flow and suggest that future studies of the Eurasian lynx explore to what extent the contemporary population structure may be explained by ecological variables. PMID:24695745

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.

PubMed

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A

2017-11-01

There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

An effective box trap for capturing lynx

Treesearch

Jay A. Kolbe; John R. Squires; Thomas W. Parker

2003-01-01

We designed a box trap for capturing lynx (Lynx lynx) that is lightweight, safe, effective, and less expensive than many commercial models. It can be constructed in approximately 3-4 hours from readily available materials. We used this trap to capture 40 lynx 89 times (96% of lynx entering traps) and observed no trapping related injuries. We compare our box...

Serologic survey for viral and bacterial infections in western populations of Canada Lynx (Lynx canadensis)

Treesearch

Roman Biek; Randall L. Zarnke; Colin Gillin; Margaret Wild; John R. Squires; Mary Poss

2002-01-01

A serologic survey for exposure to pathogens in Canada lynx (Lynx canadensis) in western North America was conducted. Samples from 215 lynx from six study areas were tested for antibodies to feline parvovirus (FPV), feline coronavirus, canine distemper virus, feline calicivirus, feline herpesvirus, Yersinia pestis, and Francisella tularensis. A subset of...

Estimating detection probability for Canada lynx Lynx canadensis using snow-track surveys in the northern Rocky Mountains, Montana, USA

Treesearch

John R. Squires; Lucretia E. Olson; David L. Turner; Nicholas J. DeCesare; Jay A. Kolbe

2012-01-01

We used snow-tracking surveys to determine the probability of detecting Canada lynx Lynx canadensis in known areas of lynx presence in the northern Rocky Mountains, Montana, USA during the winters of 2006 and 2007. We used this information to determine the minimum number of survey replicates necessary to infer the presence and absence of lynx in areas of similar lynx...

Patterns of testicular activity in captive and wild Canada lynx (Lynx canadensis)

Treesearch

Kerry Fanson; Nadja C. Wielebnowski; Tanya M. Shenk; Walter J. Jakubas; John R. Squires; Jeffrey R. Lucas

2010-01-01

Canada lynx are listed as a threatened species in the contiguous US. Understanding the reproductive characteristics (i.e., mating system, behavior, physiology) of a species is useful for ensuring effective in situ and ex situ management plans. The goal of this study was to describe patterns of androgen expression in both captive and wild male Canada lynx using...

Multiple crossings of a large glacial river by Canada Lynx (Lynx canadensis)

Treesearch

D. Feierabend; K. Kielland

2014-01-01

Rivers may act as barriers to the movement of terrestrial mammals, which could limit dispersal and gene flow. Glacial rivers are particularly hazardous because of the cold water temperature and swift current. Yet, we determined that 2 Canada Lynx (Lynx canadensis) equipped with GPS collars repeatedly swam across the main channel of the Tanana River in interior Alaska...

Assessment of a recombinant F1-V fusion protein vaccine intended to protect Canada lynx (Lynx canadensis) from plague

USGS Publications Warehouse

Wolfe, Lisa L.; Shenk, Tanya M.; Powell, Bradford; Rocke, Tonie E.

2011-01-01

As part of an ongoing restoration program in Colorado, USA, we evaluated adverse reactions and seroconversion in captive Canada lynx (Lynx canadensis) after vaccination with a recombinant F1-V fusion protein vaccine against Yersinia pestis, the bacterium that causes plague. Ten adult female lynx received the F1-V vaccine; 10 source- and age-matched lynx remained unvaccinated as controls. All of the vaccinated and control lynx remained apparently healthy throughout the confinement period. We observed no evidence of injection site or systemic reactions to the F1-V vaccine. Among vaccinated lynx, differences in log10 reciprocal antibody titers measured in sera collected before and after vaccination (two doses) ranged from 1.2 to 5.2 for anti-F1 antibodies and from 0.6 to 5.2 for anti-V antibodies; titers in unvaccinated lynx did not change appreciably over the course of confinement prior to release, and thus differences in anti-F1 (P=0.003) and anti-V (P=0.0005) titers were greater among vaccinated lynx than among controls. Although our findings suggest that the F1-V fusion protein vaccine evaluated here is likely to stimulate antibody responses that may help protect Canada lynx from plague, we observed no apparent differences in survival between vaccinated and unvaccinated subject animals. Retrospectively, 22 of 50 (44%; 95% confidence interval 29–59%) unvaccinated lynx captured or recaptured in Colorado during 2000–08 had passive hemagglutination antibody titers >1:16, consistent with exposure to Y. pestis; paired pre- and postrelease titers available for eight of these animals showed titer increases similar in magnitude to those seen in response to vaccination, suggesting at least some lynx may naturally acquire immunity to plague in Colorado habitats.

The missing lynx of Eurasia at its Southern edge: a connection to the critically endangered Balkan lynx.

PubMed

Cömert, Numan; Carlı, Oya; Dinçtürk, H Benan

2018-03-08

The populations of Eurasian lynx in Anatolia are as fragmented as the European populations. Although the origins of and the connections between the European lynx populations have been elucidated, there have been no genetic studies on the lynx populations in Turkey. The lack of genetic and evolutionary information about lynx in Anatolia, which is considered to be a biodiversity hotspot, makes it difficult to track the migration routes during the Quaternary. In this study, we present the genetic characteristics of two isolated lynx populations in Southwest Taurus Mountains and the Turkish Caucasus as well as two individuals from Erzincan area. DNA purified from the ecological scat samples collected from Çığlıkara Nature Reserve in Elmalı-Antalya and Allahuekber Mountains in Sarıkamış-Kars, as well as two roadkill samples from Erzincan, has been analysed for phylogenetic markers such as the mitochondrial DNA control region and cytochrome b. The DNA sequences were compared with haplotypes previously detected in populations from Europe and the Caucasus in order to determine the evolutionary relationships of the populations. This study compares the current genetic structure of some of the Turkish lynx populations to the other lynx genetic data, mostly carried out with museum samples around the world. Three haplotypes were found in three different regions of Anatolia. The Northeast and Southwest populations harbour genetically distinct haplotypes, the latter one, a new haplotype: H13-TR is the only phylogenetic connection to the critically endangered Balkan lynx yet to be described.

Retrospective study of morbidity and mortality of captive Iberian lynx (Lynx pardinus) in the ex situ conservation programme (2004-June 2010).

PubMed

Martínez, Fernando; Manteca, Xavier; Pastor, Josep

2013-12-01

Medical records of 120 Iberian lynx (Lynx pardinus) from the captive breeding population (CBP), 96 of which were older than 1 wk old, were studied from January 2004 to June 2010. From a total of 413 clinical signs recorded, it was possible to obtain a diagnosis in 258 (62.5%). Inappetence, skin wound, and vomiting had the highest incidence. Adult (2 to 6 yr old) and juvenile (1 wk to 1 yr old) animals accounted for most of the clinical signs. Vitamin D toxicosis and intraspecific trauma accounted for 55.4% and 15.1% of the clinical signs, respectively. Renal toxicosis due to the administration of supplements with an excess of vitamin D occurred in 2009 and affected a total of 39 individuals. Intraspecific trauma cases were predominantly observed from sibling aggression. Diet-related conditions consisted of sporadic cases of fatal salmonellosis, dermatophytosis, and gastrointestinal episodes. Suspected idiopathic epilepsy and femoral neck metaphyseal osteopathy were also observed. A total of 15 animals older than 1 wk old died including five vitamin D toxicosis cases and three juveniles due to intraspecific trauma. Mycobacterium bovis was found as a secondary infection in two animals that died from vitamin D toxicosis. Abortions, premature births, and stillbirths accounted for 12 mortalities, and 13 neonatal deaths due to maternal neglect or bacterial sepsis were observed. Data show that improvement of diet-related conditions is a key factor in preserving the health of animals in the CBP. Thus, the control of food and supplement composition, rabbit farm suppliers, and hygiene should be standardized and improved. Furthermore, data recording and diagnostic protocols should be standardized.

Polonium-210 and Caesium-137 in lynx (Lynx lynx), wolverine (Gulo gulo) and wolves (Canis lupus).

PubMed

Gjelsvik, Runhild; Holm, Elis; Kålås, John Atle; Persson, Bertil; Asbrink, Jessica

2014-12-01

Wolves, lynx and wolverines are on the top of the food-chain in northern Scandinavia and Finland. (210)Po and (137)Cs have been analysed in samples of liver, kidney and muscle from 28 wolves from Sweden. In addition blood samples were taken from 27 wolves. In 9 of the wolves, samples of muscle, liver and blood were analysed for (210)Po. Samples of liver and muscle were collected from 16 lynx and 16 wolverines from Norway. The liver samples were analysed for (210)Po and (137)Cs. Only (137)Cs analyses were carried out for the muscle samples. The wolves were collected during the winter 2010 and 2011, while the samples for lynx and wolverines were all from 2011. The activity concentrations of (210)Po in wolves were higher for liver (range 20-523 Bq kg(-1) d.w.) and kidney (range 24-942 Bq kg(-1) d.w.) than muscle (range 1-43 Bq kg(-1) d.w.) and blood (range 2-54 Bq kg(-1) d.w.). Activity ratios, (210)Po/(210)Pb, in wolf samples of muscle, liver and blood were in the ranges 2-77, 9-56 and 2-54. Using a wet weight ratio of 3.8 the maximal absorbed dose from (210)Po to wolf liver was estimated to 3500 μGy per year. Compared to wolf, the ranges of (210)Po in liver samples were lower in lynx (range 22-211 Bq kg(-1) d.w.) and wolverine (range16-160 Bq kg(-1) d.w.). Concentration of (137)Cs in wolf samples of muscle, liver, kidney and blood were in the ranges 70-8410 Bq kg(-1) d.w., 36-4050 Bq kg(-1) d.w., 31-3453 Bq kg(-1) d.w. and 4-959 Bq kg(-1) d.w., respectively. (137)Cs in lynx muscle and liver samples were in the ranges 44-13393 Bq kg(-1) d.w. and 125-10260 Bq kg(-1) d.w. The corresponding values for (137)Cs in wolverine were 22-3405 Bq kg(-1) d.w. for liver and 53-4780 Bq kg(-1) d.w. for muscle. The maximal absorbed dose from (137)Cs to lynx was estimated to 3000 μGy per year. Copyright © 2014 Elsevier Ltd. All rights reserved.

Synthesis and reception of prostaglandins in corpora lutea of domestic cat and lynx.

PubMed

Zschockelt, Lina; Amelkina, Olga; Siemieniuch, Marta J; Kowalewski, Mariusz P; Dehnhard, Martin; Jewgenow, Katarina; Braun, Beate C

2016-08-01

Felids show different reproductive strategies related to the luteal phase. Domestic cats exhibit a seasonal polyoestrus and ovulation is followed by formation of corpora lutea (CL). Pregnant and non-pregnant cycles are reflected by diverging plasma progesterone (P4) profiles. Eurasian and Iberian lynxes show a seasonal monooestrus, in which physiologically persistent CL (perCL) support constantly elevated plasma P4 levels. Prostaglandins (PGs) represent key regulators of reproduction, and we aimed to characterise PG synthesis in feline CL to identify their contribution to the luteal lifespan. We assessed mRNA and protein expression of PG synthases (PTGS2/COX2, PTGES, PGFS/AKR1C3) and PG receptors (PTGER2, PTGER4, PTGFR), and intra-luteal levels of PGE2 and PGF2α Therefore, CL of pregnant (pre-implantation, post-implantation, regression stages) and non-pregnant (formation, development/maintenance, early regression, late regression stages) domestic cats, and prooestrous Eurasian (perCL, pre-mating) and metoestrous Iberian (perCL, freshCL, post-mating) lynxes were investigated. Expression of PTGS2/COX2, PTGES and PTGER4 was independent of the luteal stage in the investigated species. High levels of luteotrophic PGE2 in perCL might be associated with persistence of luteal function in lynxes. Signals for PGFS/AKR1C3 expression were weak in mid and late luteal stages of cats but were absent in lynxes, concomitant with low PGF2α levels in these species. Thus, regulation of CL regression by luteal PGF2α seems negligible. In contrast, expression of PTGFR was evident in nearly all investigated CL of cat and lynxes, implying that luteal regression, e.g. at the end of pregnancy, is triggered by extra-luteal PGF2α. © 2016 Society for Reproduction and Fertility.

Patterns of ovarian and luteal activity in captive and wild Canada lynx (Lynx canadensis)

Treesearch

Kerry V. Fanson; Nadja C. Wielebnowski; Tanya M. Shenk; Jennifer H. Vashon; John R. Squires; Jeffrey R. Lucas

2010-01-01

Canada lynx face some unique breeding restrictions, which may have implications for population viability and captive management. The goal of this study was to improve our understanding of basic reproductive physiology in Canada lynx. Using fecal hormone metabolite analysis, we established normative patterns of fecal estrogen (fE) and progestagen (fP)...

Lynx mission concept study

NASA Astrophysics Data System (ADS)

Vikhlinin, Alexey

2018-01-01

Lynx is an observatory-class mission, featuring high throughput, exquisite angular resolution over a substantial field of view, and high spectral resolution for point and extended X-ray sources. The design requirements provide a tremendous leap in capabilities relative to missions such as Chandra and Athena. Lynx will observe the dawn of supermassive black holes through detection of very faint X-ray sources in the early universe and will reveal the "invisible drivers" of galaxy and structure formation through observations of hot, diffuse baryons in and around the galaxies. Lynx will enable breakthroughs across all of astrophysics, ranging from detailed understanding of stellar activity including effects on habitability of associated planets to population statistics of neutron stars and black holes in the Local Group galaxies, to earliest groups and clusters of galaxies, and to cosmology

Efficacy of lures and hair snares to detect lynx

Treesearch

Gregory W. McDaniel; Kevin S. McKelvey; John R. Squires; Leonard F. Ruggiero

2000-01-01

Resource managers lack an inexpensive and quantifiable method to detect lynx presence across large landscapes. We tested efficacy of a protocol based on hair snagging to detect presence of lynx (Lynx canadensis). We tested 2 key elements of the protocol: 1) a hair-snaring device and 2) commercial lures used to attract and elicit rubbing behavior in lynx. The...

Winter prey selection of Canada lynx in northwestern Montana

Treesearch

John R. Squires; Leonard F. Ruggiero

2007-01-01

The roles that diet and prey abundance play in habitat selection of Canada lynx (Lynx canadensis) in the contiguous United States is poorly understood. From 1998-2002, we back-tracked radiocollared lynx (6 F, 9 M) for a distance of 582 km and we located 86 kills in northwestern Montana, USA. Lynx preyed on 7 species that included blue grouse (Dendragapus...

Molecular identification of Taenia spp. In the Eurasian Lynx (Lynx lynx) from Finland

USDA-ARS?s Scientific Manuscript database

Cestodes of the genus Taenia are parasites of mammals, with mainly carnivores as definitive and herbivores as intermediate hosts. Various medium-sized cats, Lynx spp., are involved in the life cycles of several species of Taenia. The aim of the present study was to identify Taenia tapeworms in the E...

Habitat fragmentation and the persistence of lynx populations in Washington state

Treesearch

Gary M Koehler; Benjamin T. Maletzke; Jeff A. Von Kienast; Keith B. Aubry; Robert B. Wielgus; Robert H. Naney

2008-01-01

Lynx (Lynx canadensis) occur in the northern counties of Washington state, USA; however, current distribution and status of lynx in Washington are poorly understood. During winters 2002-2004 we snow-tracked lynx for 155 km within a 211-km2 area in northern Washington, to develop a model of lynx-habitat relationships that we...

Lynx: a database and knowledge extraction engine for integrative medicine.

PubMed

Sulakhe, Dinanath; Balasubramanian, Sandhya; Xie, Bingqing; Feng, Bo; Taylor, Andrew; Wang, Sheng; Berrocal, Eduardo; Dave, Utpal; Xu, Jinbo; Börnigen, Daniela; Gilliam, T Conrad; Maltsev, Natalia

2014-01-01

We have developed Lynx (http://lynx.ci.uchicago.edu)--a web-based database and a knowledge extraction engine, supporting annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Its underlying knowledge base (LynxKB) integrates various classes of information from >35 public databases and private collections, as well as manually curated data from our group and collaborators. Lynx provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization to assist the user in extracting meaningful knowledge from LynxKB and experimental data, whereas its service-oriented architecture provides public access to LynxKB and its analytical tools via user-friendly web services and interfaces.

Lynx: a database and knowledge extraction engine for integrative medicine

PubMed Central

Sulakhe, Dinanath; Balasubramanian, Sandhya; Xie, Bingqing; Feng, Bo; Taylor, Andrew; Wang, Sheng; Berrocal, Eduardo; Dave, Utpal; Xu, Jinbo; Börnigen, Daniela; Gilliam, T. Conrad; Maltsev, Natalia

2014-01-01

We have developed Lynx (http://lynx.ci.uchicago.edu)—a web-based database and a knowledge extraction engine, supporting annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Its underlying knowledge base (LynxKB) integrates various classes of information from >35 public databases and private collections, as well as manually curated data from our group and collaborators. Lynx provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization to assist the user in extracting meaningful knowledge from LynxKB and experimental data, whereas its service-oriented architecture provides public access to LynxKB and its analytical tools via user-friendly web services and interfaces. PMID:24270788

Large Impact of Eurasian Lynx Predation on Roe Deer Population Dynamics

PubMed Central

Andrén, Henrik; Liberg, Olof

2015-01-01

The effects of predation on ungulate populations depend on several factors. One of the most important factors is the proportion of predation that is additive or compensatory respectively to other mortality in the prey, i.e., the relative effect of top-down and bottom-up processes. We estimated Eurasian lynx (Lynx lynx) kill rate on roe deer (Capreolus capreolus) using radio-collared lynx. Kill rate was strongly affected by lynx social status. For males it was 4.85 ± 1.30 S.E. roe deer per 30 days, for females with kittens 6.23 ± 0.83 S.E. and for solitary females 2.71 ± 0.47 S.E. We found very weak support for effects of prey density (both for Type I (linear) and Type II (non-linear) functional responses) and of season (winter, summer) on lynx kill rate. Additionally, we analysed the growth rate in a roe deer population from 1985 to 2005 in an area, which lynx naturally re-colonized in 1996. The annual roe deer growth rate was lower after lynx re-colonized the study area, but it was also negatively influenced by roe deer density. Before lynx colonized the area roe deer growth rate was λ = 1.079 (± 0.061 S.E.), while after lynx re-colonization it was λ = 0.94 (± 0.051 S.E.). Thus, the growth rate in the roe deer population decreased by Δλ = 0.14 (± 0.080 S.E.) after lynx re-colonized the study area, which corresponded to the estimated lynx predation rate on roe deer (0.11 ± 0.042 S.E.), suggesting that lynx predation was mainly additive to other mortality in roe deer. To conclude, this study suggests that lynx predation together with density dependent factors both influence the roe deer population dynamics. Thus, both top-down and bottom-up processes operated at the same time in this predator-prey system. PMID:25806949

Hierarchical den selection of Canada lynx in western Montana

Treesearch

John R. Squires; Nicholas J. Decesare; Jay A. Kolbe; Leonard F. Ruggiero

2008-01-01

We studied den selection of Canada lynx (Lynx canadensis; hereafter lynx) at multiple ecological scales based on 57 dens from 19 females located in western Montana, USA, between 1999 and 2006. We considered 3 spatial scales in this analysis, including den site (11-m-radius circle surrounding dens), den area (100-m-radius circle), and den environ (1-...

Recent and historical distributions of Canada lynx in Maine and the Northeast

USGS Publications Warehouse

Hoving, C.L.; Joseph, R.A.; Krohn, W.B.

2003-01-01

The contiguous United States population of Canada lynx (Lynx canadensis Kerr) is listed as threatened under the federal Endangered Species Act. However, the historic distribution of lynx in the Northeast is poorly understood. We used museum records, bibliographic records, and interviews to reconstruct the past distribution of lynx in Maine, which is at the current southern limit of the species' distribution in the eastern United States. We found a total of 118 records, representing at least 509 lynx in Maine. Lynx were observed throughout Maine, 1833-1912, with the exception of coastal areas. After 1913, lynx were most common in the forests of western and northern Maine, and absent to rare along the coast, but had not returned to southern Maine by 1999. Thirty-nine kittens representing at least 21 litters were distributed throughout northern and western Maine, 1864-1999. Populations apparently fluctuated, and in some years 200-300 lynx were harvested in Maine. Prior to the 1900s, lynx were much more widely distributed in the Northeast, ranging from Pennsylvania north into Quebec. Because Canada lynx have had a long presence in northern New England, and at times were relatively common, this species merits serious consideration in conservation planning in this region.

Lynx web services for annotations and systems analysis of multi-gene disorders.

PubMed

Sulakhe, Dinanath; Taylor, Andrew; Balasubramanian, Sandhya; Feng, Bo; Xie, Bingqing; Börnigen, Daniela; Dave, Utpal J; Foster, Ian T; Gilliam, T Conrad; Maltsev, Natalia

2014-07-01

Lynx is a web-based integrated systems biology platform that supports annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Lynx has integrated multiple classes of biomedical data (genomic, proteomic, pathways, phenotypic, toxicogenomic, contextual and others) from various public databases as well as manually curated data from our group and collaborators (LynxKB). Lynx provides tools for gene list enrichment analysis using multiple functional annotations and network-based gene prioritization. Lynx provides access to the integrated database and the analytical tools via REST based Web Services (http://lynx.ci.uchicago.edu/webservices.html). This comprises data retrieval services for specific functional annotations, services to search across the complete LynxKB (powered by Lucene), and services to access the analytical tools built within the Lynx platform. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Theoretical insights into the population viability of lynx [Chapter 2

Treesearch

Kevin S. McKelvey; Steven W. Buskirk; Charles J. Krebs

2000-01-01

We discuss ecological theory and population models pertinent to the population biology of southern lynx. Fragmented forest cover types, high vagility of lynx, and linkages in population dynamics suggest that lynx in the contiguous United States are arranged as metapopulations. Metapopulation stability depends on not only habitat quality but also dispersal...

Habitat conditions associated with lynx hunting behavior during winter in northern Washington

Treesearch

Benjamin T. Maletzke; Gary M. Koehler; Robert B. Wielgus; Keith B. Aubry; Marc A. Evans

2008-01-01

Effectively managing habitat for threatened populations of Canada lynx (Lynx canadensis) requires knowledge of habitat conditions that provide for the ecological needs of lynx. We snow-tracked lynx to identify habitat conditions associated with hunting behavior and predation during winters of 2002-2003 and 2003-2004 in the northern Cascade Range in...

Cryobanking the genetic diversity in the critically endangered Iberian lynx (Lynx pardinus) from skin biopsies. Investigating the cryopreservation and culture ability of highly valuable explants and cells.

PubMed

León-Quinto, Trinidad; Simón, Miguel A; Sánchez, Angel; Martín, Francisco; Soria, Bernat

2011-04-01

Cryobanking skin samples permit preserving a maximum of genetic representation from the population biodiversity. This is a relevant aspect for threatened species, potentially menaced by an epizooty and from which it is difficult to obtain gametes. As a first step for properly cryobanking skin samples of a given species, the optimal conditions of culture and freezing have to be studied by covering a broad range of possibilities. This paper presents, for the first time, a systematic study of such conditions for the Iberian lynx (Lynx pardinus). To that end, we have analyzed twenty different culture conditions and fifteen different freezing solutions for skin explants, as well as three freezing solutions for isolated cells derived from them. The culture conditions included both two different culture strategies and several combinations of nutritional supplements and mitotic agents. For the freezing solutions, we have considered different concentrations of the permeating cryoprotectant dimethyl sulfoxide (Me(2)SO) either alone (5%, 7.5%, 10%, 12.5% and 15% v/v for explants, 10% for isolated cells) or along with the non-permeating cryoprotectant sucrose (0.1 or 0.2M). Our results have been analyzed through several quantitative parameters and show that only thawed explants cryopreserved in Me(2)SO (10%) either alone or with sucrose (0.2M) presented similar properties to those in optimal fresh cultures. In addition, for these freezing conditions, isolated thawed cells also presented high survival rates (90%) and percentages of cellular functionality (85%). These results, focussed on the most endangered felid in the world, could be also useful for other threatened/endangered species. Copyright © 2011 Elsevier Inc. All rights reserved.

The effect of snowmobile trails on coyote movements within lynx home ranges

Treesearch

Jay A. Kolbe; John R. Squires; Daniel H. Pletscher; Leonard F. Ruggiero

2007-01-01

Coyotes (Canis latrans) and Canada lynx (Lynx canadensis) are sympatric throughout much of the lynx’s southern range. Researchers and managers have suggested that the presence of compacted snowmobile trails may allow coyotes to access lynx habitat from which they were previously excluded by deep, unconsolidated snow. This could then allow coyotes to more...

Performance analysis and kernel size study of the Lynx real-time operating system

NASA Technical Reports Server (NTRS)

Liu, Yuan-Kwei; Gibson, James S.; Fernquist, Alan R.

1993-01-01

This paper analyzes the Lynx real-time operating system (LynxOS), which has been selected as the operating system for the Space Station Freedom Data Management System (DMS). The features of LynxOS are compared to other Unix-based operating system (OS). The tools for measuring the performance of LynxOS, which include a high-speed digital timer/counter board, a device driver program, and an application program, are analyzed. The timings for interrupt response, process creation and deletion, threads, semaphores, shared memory, and signals are measured. The memory size of the DMS Embedded Data Processor (EDP) is limited. Besides, virtual memory is not suitable for real-time applications because page swap timing may not be deterministic. Therefore, the DMS software, including LynxOS, has to fit in the main memory of an EDP. To reduce the LynxOS kernel size, the following steps are taken: analyzing the factors that influence the kernel size; identifying the modules of LynxOS that may not be needed in an EDP; adjusting the system parameters of LynxOS; reconfiguring the device drivers used in the LynxOS; and analyzing the symbol table. The reductions in kernel disk size, kernel memory size and total kernel size reduction from each step mentioned above are listed and analyzed.

Wave of chaos in a spatial eco-epidemiological system: Generating realistic patterns of patchiness in rabbit-lynx dynamics.

PubMed

Upadhyay, Ranjit Kumar; Roy, Parimita; Venkataraman, C; Madzvamuse, A

2016-11-01

In the present paper, we propose and analyze an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the presence of diffusion the model has the potential of exhibiting Turing instability. Numerical results (finite difference and finite element methods) reveal the existence of the wave of chaos and this appears to be a dominant mode of disease dispersal. We also show the mechanism of spatiotemporal pattern formation resulting from the Hopf bifurcation analysis, which can be a potential candidate for understanding the complex spatiotemporal dynamics of eco-epidemiological systems. Implications of the asymptotic transmission rate on disease eradication among rabbit population which in turn enhances the survival of Iberian lynx are discussed. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.

Lynx1 Limits Dendritic Spine Turnover in the Adult Visual Cortex

PubMed Central

Sajo, Mari

2016-01-01

Dendritic spine turnover becomes limited in the adult cerebral cortex. Identification of specific aspects of spine dynamics that can be unmasked in adulthood and its regulatory molecular mechanisms could provide novel therapeutic targets for inducing plasticity at both the functional and structural levels for robust recovery from brain disorders and injuries in adults. Lynx1, an endogenous inhibitor of nicotinic acetylcholine receptors, was previously shown to increase its expression in adulthood and thus to limit functional ocular dominance plasticity in adult primary visual cortex (V1). However, the role of this “brake” on spine dynamics is not known. We examined the contribution of Lynx1 on dendritic spine turnover before and after monocular deprivation (MD) in adult V1 with chronic in vivo imaging using two-photon microscopy and determined the spine turnover rate of apical dendrites of layer 5 (L5) and L2/3 pyramidal neurons in adult V1 of Lynx1 knock-out (KO) mice. We found that the deletion of Lynx1 doubled the baseline spine turnover rate, suggesting that the spine dynamics in the adult cortex is actively limited by the presence of Lynx1. After MD, adult Lynx1-KO mice selectively exhibit higher rate of spine loss with no difference in gain rate in L5 neurons compared with control wild-type counterparts, revealing a key signature of spine dynamics associated with robust functional plasticity in adult V1. Overall, Lynx1 could be a promising therapeutic target to induce not only functional, but also structural plasticity at the level of spine dynamics in the adult brain. SIGNIFICANCE STATEMENT Dendritic spine turnover becomes limited in the adult cortex. In mouse visual cortex, a premier model of experience-dependent plasticity, we found that the deletion of Lynx1, a nicotinic “brake” for functional plasticity, doubled the baseline spine turnover in adulthood, suggesting that the spine dynamics in the adult cortex is actively limited by Lynx1. After

History and distribution of lynx in the contiguous United States [Chapter 8

Treesearch

Kevin S. McKelvey

2000-01-01

Using written accounts, trapping records, and spatially referenced occurrence data, the authors reconstructed the history and distribution of lynx in the contiguous United States from the 1800s to the present. Records show lynx occurrence in 24 states. Data over broad scales of space and time show lynx distribution...

Comparative ecology of lynx in North America [Chapter 14

Treesearch

Steven W. Buskirk; Leonard F. Ruggiero; Keith B. Aubry; Dean E. Pearson; John R. Squires; Kevin S. McKelvey

2000-01-01

: Lynx occur across a large geographic area, but have only been studied in a few locations, and this has led to extrapolation of understandings into areas with very divergent ecologies. We discuss ecological differences across the range of lynx, contrasting the patterns of climate, vegetation, disturbance dynamics and succession, and predator/prey...

Predicting the effects of forest management on lynx populations

Treesearch

John R. Squires

2008-01-01

Lynx are quintessential snowshoe hare predators with morphological adaptations such as large paws. This species depends on boreal forests, so the listing of Canada Lynx as a Threatened species is a major conservation issue to forest managers. The U.S. Fish and Wildlife Service stated that human alteration of forest abundance, composition, and connectivity was the most...

NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1.

PubMed

Lyukmanova, Ekaterina N; Shenkarev, Zakhar O; Shulepko, Mikhail A; Mineev, Konstantin S; D'Hoedt, Dieter; Kasheverov, Igor E; Filkin, Sergey Yu; Krivolapova, Alexandra P; Janickova, Helena; Dolezal, Vladimir; Dolgikh, Dmitry A; Arseniev, Alexander S; Bertrand, Daniel; Tsetlin, Victor I; Kirpichnikov, Mikhail P

2011-03-25

Discovery of proteins expressed in the central nervous system sharing the three-finger structure with snake α-neurotoxins provoked much interest to their role in brain functions. Prototoxin LYNX1, having homology both to Ly6 proteins and three-finger neurotoxins, is the first identified member of this family membrane-tethered by a GPI anchor, which considerably complicates in vitro studies. We report for the first time the NMR spatial structure for the water-soluble domain of human LYNX1 lacking a GPI anchor (ws-LYNX1) and its concentration-dependent activity on nicotinic acetylcholine receptors (nAChRs). At 5-30 μM, ws-LYNX1 competed with (125)I-α-bungarotoxin for binding to the acetylcholine-binding proteins (AChBPs) and to Torpedo nAChR. Exposure of Xenopus oocytes expressing α7 nAChRs to 1 μM ws-LYNX1 enhanced the response to acetylcholine, but no effect was detected on α4β2 and α3β2 nAChRs. Increasing ws-LYNX1 concentration to 10 μM caused a modest inhibition of these three nAChR subtypes. A common feature for ws-LYNX1 and LYNX1 is a decrease of nAChR sensitivity to high concentrations of acetylcholine. NMR and functional analysis both demonstrate that ws-LYNX1 is an appropriate model to shed light on the mechanism of LYNX1 action. Computer modeling, based on ws-LYNX1 NMR structure and AChBP x-ray structure, revealed a possible mode of ws-LYNX1 binding.

Spatial ecology and movement of reintroduced Canada lynx

USGS Publications Warehouse

Buderman, Frances E.; Hooten, Mevin B.; Ivan, Jacob S.; Shenk, Tanya

2017-01-01

Understanding movement behavior and identifying areas of landscape connectivity is critical for the conservation of many species. However, collecting fine‐scale movement data can be prohibitively time consuming and costly, especially for rare or endangered species, whereas existing data sets may provide the best available information on animal movement. Contemporary movement models may not be an option for modeling existing data due to low temporal resolution and large or unusual error structures, but inference can still be obtained using a functional movement modeling approach. We use a functional movement model to perform a population‐level analysis of telemetry data collected during the reintroduction of Canada lynx to Colorado. Little is known about southern lynx populations compared to those in Canada and Alaska, and inference is often limited to a few individuals due to their low densities. Our analysis of a population of Canada lynx fills significant gaps in the knowledge of Canada lynx behavior at the southern edge of its historical range. We analyzed functions of individual‐level movement paths, such as speed, residence time, and tortuosity, and identified a region of connectivity that extended north from the San Juan Mountains, along the continental divide, and terminated in Wyoming at the northern edge of the Southern Rocky Mountains. Individuals were able to traverse large distances across non‐boreal habitat, including exploratory movements to the Greater Yellowstone area and beyond. We found evidence for an effect of seasonality and breeding status on many of the movement quantities and documented a potential reintroduction effect. Our findings provide the first analysis of Canada lynx movement in Colorado and substantially augment the information available for conservation and management decisions. The functional movement framework can be extended to other species and demonstrates that information on movement behavior can be obtained using

Lynx home range and movements in Montana and Wyoming: Preliminary results [Chapter 11

Treesearch

John R. Squires; Tom Laurion

2000-01-01

Preliminary telemetry data suggest that lynx in Montana and Wyoming have large home ranges; this result supports the Koehler and Aubry (1994) contention that lynx from southern lynx populations have large spatial-use areas. Annual home ranges of males were larger than females. Straight-line, daily travel distance averaged 2 to 4 km, which is similar to northern...

Ecology of Canada lynx in southern boreal forests [Chapter 13

Treesearch

Keith B. Aubry; Gary M. Koehler; John R. Squires

2000-01-01

Canada lynx occur throughout boreal forests of North America, but ecological conditions in southern regions differ in many respects from those in Canada and Alaska. To evaluate the extent to which lynx ecology and population biology may differ between these regions, we review existing information from southern boreal forests and compare our findings to...

Missing lynx and trophic cascades in food webs: A reply to Ripple et al.

Treesearch

John R. Squires; Nicholas J. DeCesare; Mark Hebblewhite; Joel Berger

2012-01-01

Ripple et al. (2011) proposed a hypothesis that the recovery of gray wolves (Canis lupus) may positively affect the viability of threatened Canada lynx (Lynx canadensis) populations in the contiguous United States through indirect species interactions. Ripple et al. (2011) proposed 2 key trophic linkages connecting wolf restoration with lynx recovery. First, recovering...

American marten, fisher, lynx, and wolverine: survey methods for their detection

Treesearch

William J. Zielinski; Thomas E. Kucera

1995-01-01

The status of the American marten (Martes americana), fisher (Martes pennanti), lynx (Lynx canadensis), and wolverine (Gulo gulo) is of increasing concern to managers and conservationists in much of the western United States. Because these species are protected throughout much of their range in...

The scientific basis for lynx conservation: Qualified insights [Chapter 16

Treesearch

Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

2000-01-01

The information presented in this chapter is based on (1) extant knowledge of lynx ecology, (2) the pertinence of this knowledge to lynx conservation in the contiguous United States, (3) the ecological concepts discussed in the first section of this book, and (4) the collective interpretation and judgment of the authors. We have chosen the term "qualified...

Seasonal resource selection of Canada lynx in managed forests of the northern Rocky Mountains

Treesearch

John R. Squires; Nicholas J. DeCesare; Jay A. Kolbe; Leonard F. Ruggiero

2010-01-01

We investigated seasonal patterns in resource selection of Canada lynx (Lynx canadensis) in the northern Rockies (western MT, USA) from 1998 to 2002 based on backtracking in winter (577 km; 10 M, 7 F) and radiotelemetry (630 locations; 16 M, 11 F) in summer. During winter, lynx preferentially foraged in mature, multilayer forests with Engelmann spruce (Picea...

Defining space use and movements of Canada lynx with global positioning system telemetry

USGS Publications Warehouse

Burdett, C.L.; Moen, R.A.; Niemi, G.J.; Mech, L.D.

2007-01-01

Space use and movements of Canada lynx (Lynx canadensis) are difficult to study with very-high-frequency radiocollars. We deployed global positioning system (GPS) collars on 11 lynx in Minnesota to study their seasonal space-use patterns. We estimated home ranges with minimum-convex-polygon and fixed-kernel methods and estimated core areas with area/probability curves. Fixed-kernel home ranges of males (range = 29-522 km2) were significantly larger than those of females (range = 5-95 km2) annually and during the denning season. Some male lynx increased movements during March, the month most influenced by breeding activity. Lynx core areas were predicted by the 60% fixed-kernel isopleth in most seasons. The mean core-area size of males (range = 6-190 km2) was significantly larger than that of females (range = 1-19 km2) annually and during denning. Most female lynx were reproductive animals with reduced movements, whereas males often ranged widely between Minnesota and Ontario. Sensitivity analyses examining the effect of location frequency on home-range size suggest that the home-range sizes of breeding females are less sensitive to sample size than those of males. Longer periods between locations decreased home-range and core-area overlap relative to the home range estimated from daily locations. GPS collars improve our understanding of space use and movements by lynx by increasing the spatial extent and temporal frequency of monitoring and allowing home ranges to be estimated over short periods that are relevant to life-history characteristics. ?? 2007 American Society of Mammalogists.

Age, sex, reproduction, and spatial organization of lynxes colonizing northeastern Minnesota

USGS Publications Warehouse

Mech, L.D.

1980-01-01

From 1972 through 1978, lynxes (Felis lynx) emigrating from Canada were studied in northeastern Minnesota. Fourteen individuals were radio-tracked, 8 wefe ear-tagged, and 49 carcasses were examined. Sex ratios of the samples were equal during the first years of the study, but females predominated later. At least half of the radiotagged lynxes were killed by humans; no natural mortality was detected. Home range sizes ranged from 51 to 122 km2 for females and 145 to 243 km2 for males, up to 10 times the sizes of those reported by other workers. Ranges of females tended to overlap. Males and females appeared to be segregated in the population.

Ecology and conservation of lynx in the United States [Preface

Treesearch

Leonard F. Ruggiero

2000-01-01

When we began the task of elucidating the scientific basis for lynx conservation in June 1998, I had little idea how constrained our time would be. The request to do this job came from a consortium of federal land management agencies in response to the U.S. Fish and Wildlife Service’s "proposed rule" to list the Canada lynx as a threatened or endangered...

PE-46 The Design of the Lynx X-Ray Microcalorimeter

NASA Technical Reports Server (NTRS)

Bandler, Simon; Dipirro, Michael; Eckart, Megan; Sakai, Kazuhiro; Smith, Stephen; Yoon, Wonsik; Bennett, Douglas; Kotsubo, Vincent; Mates, Benjamin; Swetz, Daneil;

Small passenger car transmission test: Mercury Lynx ATX transmission

NASA Technical Reports Server (NTRS)

Bujold, M. P.

1981-01-01

The testing of a Mercury Lynx automatic transmission is reported. The transmission was tested in accordance with a passenger car automatic transmission test code (SAE J65lb) which required drive performance, coast performance, and no load test conditions. Under these conditions, the transmission attained maximum efficiencies in the mid-ninety percent range both for drive performance test and coast performance tests. The torque, speed, and efficiency curves are presented, which provide the complete performance characteristics for the Mercury Lynx automatic transmission.

Patterns of Lynx Predation at the Interface between Protected Areas and Multi-Use Landscapes in Central Europe

PubMed Central

Belotti, Elisa; Weder, Nicole; Bufka, Luděk; Kaldhusdal, Arne; Küchenhoff, Helmut; Seibold, Heidi; Woelfing, Benno; Heurich, Marco

2015-01-01

In Central Europe, protected areas are too small to ensure survival of populations of large carnivores. In the surrounding areas, these species are often persecuted due to competition with game hunters. Therefore, understanding how predation intensity varies spatio-temporally across areas with different levels of protection is fundamental. We investigated the predation patterns of Eurasian lynx (Lynx lynx) on roe deer (Capreolus capreolus) and red deer (Cervus elaphus) in both protected areas and multi-use landscapes of the Bohemian Forest Ecosystem. Based on 359 roe and red deer killed by 10 GPS-collared lynx, we calculated the species-specific annual kill rates and tested for effects of season and lynx age, sex and reproductive status. Because roe and red deer in the study area concentrate in unprotected lowlands during winter, we modeled spatial distribution of kills separately for summer and winter and calculated-the probability of a deer killed by lynx and-the expected number of kills for areas with different levels of protection. Significantly more roe deer (46.05–74.71/year/individual lynx) were killed than red deer (1.57–9.63/year/individual lynx), more deer were killed in winter than in summer, and lynx family groups had higher annual kill rates than adult male, single adult female and subadult female lynx. In winter the probability of a deer killed and the expected number of kills were higher outside the most protected part of the study area than inside; in summer, this probability did not differ between areas, and the expected number of kills was slightly larger inside than outside the most protected part of the study area. This indicates that the intensity of lynx predation in the unprotected part of the Bohemian Forest Ecosystem increases in winter, thus mitigation of conflicts in these areas should be included as a priority in the lynx conservation strategy. PMID:26379142

Density of wild prey modulates lynx kill rates on free-ranging domestic sheep.

PubMed

Odden, John; Nilsen, Erlend B; Linnell, John D C

2013-01-01

Understanding the factors shaping the dynamics of carnivore-livestock conflicts is vital to facilitate large carnivore conservation in multi-use landscapes. We investigated how the density of their main wild prey, roe deer Capreolus capreolus, modulates individual Eurasian lynx Lynx lynx kill rates on free-ranging domestic sheep Ovis aries across a range of sheep and roe deer densities. Lynx kill rates on free-ranging domestic sheep were collected in south-eastern Norway from 1995 to 2011 along a gradient of different livestock and wild prey densities using VHF and GPS telemetry. We used zero-inflated negative binomial (ZINB) models including lynx sex, sheep density and an index of roe deer density as explanatory variables to model observed kill rates on sheep, and ranked the models based on their AICc values. The model including the effects of lynx sex and sheep density in the zero-inflation model and the effect of lynx sex and roe deer density in the negative binomial part received most support. Irrespective of sheep density and sex, we found the lowest sheep kill rates in areas with high densities of roe deer. As roe deer density decreased, males killed sheep at higher rates, and this pattern held for both high and low sheep densities. Similarly, females killed sheep at higher rates in areas with high densities of sheep and low densities of roe deer. However, when sheep densities were low females rarely killed sheep irrespective of roe deer density. Our quantification of depredation rates can be the first step towards establishing fairer compensation systems based on more accurate and area specific estimation of losses. This study demonstrates how we can use ecological theory to predict where losses of sheep will be greatest, and can be used to identify areas where mitigation measures are most likely to be needed.

Density of Wild Prey Modulates Lynx Kill Rates on Free-Ranging Domestic Sheep

PubMed Central

Odden, John; Nilsen, Erlend B.; Linnell, John D. C.

2013-01-01

Understanding the factors shaping the dynamics of carnivore–livestock conflicts is vital to facilitate large carnivore conservation in multi-use landscapes. We investigated how the density of their main wild prey, roe deer Capreolus capreolus, modulates individual Eurasian lynx Lynx lynx kill rates on free-ranging domestic sheep Ovis aries across a range of sheep and roe deer densities. Lynx kill rates on free-ranging domestic sheep were collected in south-eastern Norway from 1995 to 2011 along a gradient of different livestock and wild prey densities using VHF and GPS telemetry. We used zero-inflated negative binomial (ZINB) models including lynx sex, sheep density and an index of roe deer density as explanatory variables to model observed kill rates on sheep, and ranked the models based on their AICc values. The model including the effects of lynx sex and sheep density in the zero-inflation model and the effect of lynx sex and roe deer density in the negative binomial part received most support. Irrespective of sheep density and sex, we found the lowest sheep kill rates in areas with high densities of roe deer. As roe deer density decreased, males killed sheep at higher rates, and this pattern held for both high and low sheep densities. Similarly, females killed sheep at higher rates in areas with high densities of sheep and low densities of roe deer. However, when sheep densities were low females rarely killed sheep irrespective of roe deer density. Our quantification of depredation rates can be the first step towards establishing fairer compensation systems based on more accurate and area specific estimation of losses. This study demonstrates how we can use ecological theory to predict where losses of sheep will be greatest, and can be used to identify areas where mitigation measures are most likely to be needed. PMID:24278123

Canada lynx habitat and topographic use patterns in north central Washington: A reanalysis [Chapter 10

Treesearch

Kevin S. McKelvey; Yvette K. Ortega; Gary M. Koehler; Keith B. Aubry; J. David. Brittell

2000-01-01

We examined habitat selection by 22 lynx on the Okanogan National Forest in Washington, analyzing radio-telemetry data collected during two previous studies, 1981 through 1988. At a coarse scale, lynx showed little use of areas below 1,400 m or above 2,150 m. Within the zone between 1,400 and 2,150 m, lynx used areas with slopes <10% and moderate stream...

The ly-6 protein, lynx1, is an endogenous inhibitor of nicotinic signaling in airway epithelium.

PubMed

Fu, Xiao Wen; Rekow, Stephen S; Spindel, Eliot R

2012-10-15

Our laboratory has previously reported that bronchial epithelial cells (BEC) express a regulatory cascade of classic neurotransmitters and receptors that communicate in an almost neuronal-like manner to achieve physiological regulation. In this paper we show that the similarity between neurotransmitter signaling in neurons and BEC extends to the level of transmitter receptor allosteric modulators. Lynx1 is a member of the ly-6/three-finger superfamily of proteins, many of which modulate receptor signaling activity. Lynx1 specifically has been shown to modulate nicotinic acetylcholine receptor (nAChR) function in neurons by altering receptor sensitivity and desensitization. We now report that lynx1 forms a complex with α7 nAChR in BEC and serves to negatively regulate α7 downstream signaling events. Treatment of primary cultures of BEC with nicotine increased levels of nAChR subunits and that increase was potentiated by lynx1 knockdown. Lynx1 knockdown also potentiated the nicotine-induced increase in GABA(A) receptors (GABA(A)R) and MUC5AC mRNA expression, and that effect was blocked by α7 antagonists and α7 knockdown. In parallel with the increases in nAChR, GABA(A)R, and mucin mRNA levels, lynx1 knockdown also increased levels of p-Src. Consistent with this, inhibition of Src signaling blocked the ability of the lynx1 knockdown to increase basal and nicotine-stimulated GABA(A)R and mucin mRNA expression. Thus lynx1 appears to act as a negative modulator of α7 nAChR-induced events by inhibiting Src activation. This suggests that lynx1 agonists or mimetics are a potentially important therapeutic target to develop new therapies for smoking-related diseases characterized by increased mucin expression.

Den use and activity patterns in female Canada lynx (Lynx Canadensis) in the northern Rocky Mountains

Treesearch

Lucretia E. Olson; John R. Squires; Nicholas J. DeCesare; Jay A. Kolbe

2011-01-01

Knowledge of female behavior while rearing young can have important implications for species conservation. We located dens and analyzed activity (defined as movement between consecutive GPS locations) for nine female lynx with kittens in the northcentral Rocky Mountains in 2005 and 2007. We used GPS tracking collars to quantify the percentage of time a female spent...

Movements of a male Canada lynx crossing the greater Yellowstone Area, including highways

Treesearch

John R. Squires; Robert Oakleaf

2005-01-01

From 1999-2001, a male Canada lynx engaged in yearly exploratory movements across the greater Yellowstone area including the Teton Wilderness Area and Yellowstone National Park. For three consecutive summers, the lynx traversed a similar path in a northwesterly direction from the animal’s home range in the Wyoming Range near Big Piney, Wyoming, to as far as...

Fear or food - abundance of red fox in relation to occurrence of lynx and wolf.

PubMed

Wikenros, Camilla; Aronsson, Malin; Liberg, Olof; Jarnemo, Anders; Hansson, Jessica; Wallgren, Märtha; Sand, Håkan; Bergström, Roger

2017-08-22

Apex predators may affect mesopredators through intraguild predation and/or supply of carrion from their prey, causing a trade-off between avoidance and attractiveness. We used wildlife triangle snow-tracking data to investigate the abundance of red fox (Vulpes vulpes) in relation to lynx (Lynx lynx) and wolf (Canis lupus) occurrence as well as land composition and vole (Microtus spp.) density. Data from the Swedish wolf-monitoring system and VHF/GPS-collared wolves were used to study the effect of wolf pack size and time since wolf territory establishment on fox abundance. Bottom-up processes were more influential than top-down effects as the proportion of arable land was the key indicator of fox abundance at the landscape level. At this spatial scale, there was no effect of wolf abundance on fox abundance, whereas lynx abundance had a positive effect. In contrast, at the wolf territory level there was a negative effect of wolves on fox abundance when including detailed information of pack size and time since territory establishment, whereas there was no effect of lynx abundance. This study shows that different apex predator species may affect mesopredator abundance in different ways and that the results may be dependent on the spatiotemporal scale and resolution of the data.

The scientific basis for lynx conservation: Can we get there from here? [Chapter 18

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

2000-01-01

As we emphasized in the Preface, this book was written under very unusual circumstances. We began the book shortly after the lynx was proposed for listing as threatened or endangered under the Endangered Species Act (ESA). Our purpose was to elucidate the scientific basis for conserving lynx for use in listing deliberations and in establishing land management policy,...

Habitat Selection and Risk of Predation: Re-colonization by Lynx had Limited Impact on Habitat Selection by Roe Deer

PubMed Central

Samelius, Gustaf; Andrén, Henrik; Kjellander, Petter; Liberg, Olof

2013-01-01

Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx – the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1) before and after lynx re-established in the study area and (2) in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection). Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations. PMID:24069419

Habitat selection and risk of predation: re-colonization by lynx had limited impact on habitat selection by roe deer.

PubMed

Samelius, Gustaf; Andrén, Henrik; Kjellander, Petter; Liberg, Olof

2013-01-01

Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx - the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1) before and after lynx re-established in the study area and (2) in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection). Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations.

Optimizing cholinergic tone through lynx modulators of nicotinic receptors: implications for plasticity and nicotine addiction.

PubMed

Miwa, Julie M; Lester, Henry A; Walz, Andreas

2012-08-01

The cholinergic system underlies both adaptive (learning and memory) and nonadaptive (addiction and dependency) behavioral changes through its ability to shape and regulate plasticity. Protein modulators such as lynx family members can fine tune the activity of the cholinergic system and contribute to the graded response of the cholinergic system, stabilizing neural circuitry through direct interaction with nicotinic receptors. Release of this molecular brake can unmask cholinergic-dependent mechanisms in the brain. Lynx proteins have the potential to provide top-down control over plasticity mechanisms, including addictive propensity. If this is indeed the case, then, what regulates the regulator? Transcriptional changes of lynx genes in response to pharmacological, physiological, and pathological alterations are explored in this review.

Activity Patterns of Eurasian Lynx Are Modulated by Light Regime and Individual Traits over a Wide Latitudinal Range

PubMed Central

Heurich, Marco; Hilger, Anton; Küchenhoff, Helmut; Andrén, Henrik; Bufka, Luděk; Krofel, Miha; Mattisson, Jenny; Odden, John; Persson, Jens; Rauset, Geir R.; Schmidt, Krzysztof; Linnell, John D. C.

2014-01-01

The activity patterns of most terrestrial animals are regarded as being primarily influenced by light, although other factors, such as sexual cycle and climatic conditions, can modify the underlying patterns. However, most activity studies have been limited to a single study area, which in turn limit the variability of light conditions and other factors. Here we considered a range of variables that might potentially influence the activity of a large carnivore, the Eurasian lynx, in a network of studies conducted with identical methodology in different areas spanning latitudes from 49°7′N in central Europe to 70°00′N in northern Scandinavia. The variables considered both light conditions, ranging from a day with a complete day–night cycle to polar night and polar day, as well as individual traits of the animals. We analysed activity data of 38 individual free-ranging lynx equipped with GPS-collars with acceleration sensors, covering more than 11,000 lynx days. Mixed linear additive models revealed that the lynx activity level was not influenced by the daily daylight duration and the activity pattern was bimodal, even during polar night and polar day. The duration of the active phase of the activity cycle varied with the widening and narrowing of the photoperiod. Activity varied significantly with moonlight. Among adults, males were more active than females, and subadult lynx were more active than adults. In polar regions, the amplitude of the lynx daily activity pattern was low, likely as a result of the polycyclic activity pattern of their main prey, reindeer. At lower latitudes, the basic lynx activity pattern peaked during twilight, corresponding to the crepuscular activity pattern of the main prey, roe deer. Our results indicated that the basic activity of lynx is independent of light conditions, but is modified by both individual traits and the activity pattern of the locally most important prey. PMID:25517902

LYNX community advocacy & service engagement (CASE) project final report.

DOT National Transportation Integrated Search

2009-05-14

This report is a final assessment of the Community Advocacy & Service Engagement (CASE) project, a LYNX-FTA research project designed : to study transit education and public engagement methods in Central Florida. In the Orlando area, as in other part...

Combining resource selection and movement behavior to predict corridors for Canada lynx at their southern range periphery

Treesearch

John R. Squires; Nicholas J. DeCesare; Lucretia E. Olson; Jay A. Kolbe; Mark Hebblewhite; Sean A. Parks

2013-01-01

Maintaining connectivity with source populations is especially important for populations of boreal species at the southern edge of their distributions, where anthropogenic disturbance and climate change can be a threat. In the conterminous United States, Canada lynx Lynx canadensis is a federally threatened boreal species that may require connectivity with northern...

Nuutuuyiglu Tuttuglu (The Lynx and the Two Caribou).

ERIC Educational Resources Information Center

Pope, Mary L.; And Others

This second grade elementary language text, designed for children in bilingual Inupiat-English programs in Ambler, Kobuk, Kiana, Noorvik, and Shungnak, contains a story about a lynx who tries to kill two caribou at one time but who is himself killed. Each page of text is illustrated with a black-and-white drawing. The English equivalent is given…

Appendix B: Fisher, lynx, wolverine summary of distribution information

Treesearch

Mary Maj

1994-01-01

We present maps depicting distributions of fisher, lynx, and wolverine in the western United States since 1961. Comparison of past and current distributions of species can shed light on population persistence, periods of population isolation, meta-population structure, and important connecting landscapes. Information on the distribution of the American marten is not...

Lynx conservation in an ecosystem management context [Chapter 15

Treesearch

Kevin S. McKelvey; Keith B. Aubry; James K. Agee; Steven W. Buskirk; Leonard F. Ruggiero; Gary M. Koehler

2000-01-01

In an ecosystem management context, management for lynx must occur in the context of the needs of other species, watershed health, and a variety of products, outputs, and uses. This chapter presents a management model based on the restoration of historical patterns and processes. We argue that this model is sustainable in a formal sense, practical, and likely...

Ecology and conservation of lynx in the United States

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

1999-01-01

Once found throughout the Rocky Mountains and forests of the northern states, the lynx now hides in pockets of its former range while feeding mostly on small animals like snowshoe hares. A team of government and university scientists review the newest scientific knowledge of this unique cat's history, distribution, and ecology. The chapters on this web site...

Space-use, diet, demographics, and topographic associations of lynx in the southern Canadian Rocky Mountains: A study [Chapter 12

Treesearch

Clayton D. Apps

2000-01-01

Snowshoe hares are considered the primary prey of Canada lynx throughout their range. Relative to northern populations, hares occurring in mountainous regions at southern latitudes are thought to remain at low and stable densities through time. Hence, the ecology of associated southern lynx populations is expected to resemble that of northern populations during the low...

Habitat fragmentation and interspecific competition: Implications for lynx conservation [Chapter 4

Treesearch

Steven W. Buskirk

2000-01-01

Habitat fragmentation and interspecific competition are two important forces that potentially affect lynx populations. Fragmentation operates by various mechanisms, including direct habitat loss, vehicle collisions and behavioral disturbance from roads, and changes in landscape features such as edges. Competition takes two forms: Exploitation competition involves...

Implications from XMM and Chandra Source Catalogs for Future Studies with Lynx

NASA Astrophysics Data System (ADS)

Ptak, Andrew

2018-01-01

Lynx will perform extremely sensitive X-ray surveys by combining very high-resolution imaging over a large field of view with a high effective area. These will include deep planned surveys and serendipitous source surveys. Here we discuss implications that can be gleaned from current Chandra and XMM-Newton serendipitous source surveys. These current surveys have discovered novel sources such as tidal disruption events, binary AGN, and ULX pulsars. In addition these surveys have detected large samples of normal galaxies, low-luminosity AGN and quasars due to the wide-area coverage of the Chandra and XMM-Newton source catalogs, allowing the evolution of these phenonema to be explored. The wide area Lynx surveys will probe down further in flux and will be coupled with very sensitive wide-area surveys such as LSST and SKA, allowing for detailed modeling of their SEDs and the discovery of rare, exotic sources and transient events.

Ecology of lynx in northern Canada and Alaska [Chapter 9

Treesearch

Garth Mowat; Kim G. Poole; Mark O' Donoghue

2000-01-01

We review the ecology of lynx in the northern part of its range, drawing heavily on the results of recent research from that region. Snowshoe hares form the bulk of prey items in essentially all studies and at all periods in the cycle, but use of alternative prey, often red squirrel, increases as hares become scarce. Caching of freshly killed prey is rare,...

Forensic veterinary radiology: ballistic-radiological 3D computertomographic reconstruction of an illegal lynx shooting in Switzerland.

PubMed

Thali, Michael J; Kneubuehl, Beat P; Bolliger, Stephan A; Christe, Andreas; Koenigsdorfer, Urs; Ozdoba, Christoph; Spielvogel, Elke; Dirnhofer, Richard

2007-08-24

The lynx, which was reintroduced to Switzerland after being exterminated at the beginning of the 20th century, is protected by Swiss law. However, poaching occurs from time to time, which makes criminal investigations necessary. In the presented case, an illegally shot lynx was examined by conventional plane radiography and three-dimensional multislice computertomography (3D MSCT), of which the latter yielded superior results with respect to documentation and reconstruction of the inflicted gunshot wounds. We believe that 3D MSCT, already described in human forensic-pathological cases, is also a suitable and promising new technique for veterinary pathology.

Performance and rotor loads measurements of the Lynx XZ170 helicopter with rectangular blades

NASA Technical Reports Server (NTRS)

Lau, Benton H.; Louie, Alexander W.; Griffiths, Nicholas; Sotiriou, Costantinos P.

1993-01-01

This report presents the results of a series of flight tests on the Lynx XZ170 helicopter with rectangular blades. The test objectives were to explore the flight envelope and to measure the performance and structural loads of the Lynx main-rotor system. The tests were conducted as part of the British Experimental Rotor Program (BERP) under a contract with the Ministry of Defense in England. Data were acquired for steady-level flights at five weight coefficients. Some flight conditions were tested at beyond the retreating-blade stall boundary, which was defined by a predetermined limit on the pitchlink vibratory load. In addition to documenting the flight conditions and data, this report describes the aircraft, particularly the rotor system, in detail.

The subtle role of climate change on population genetic structure in Canada lynx.

PubMed

Row, Jeffrey R; Wilson, Paul J; Gomez, Celine; Koen, Erin L; Bowman, Jeff; Thornton, Daniel; Murray, Dennis L

2014-07-01

Anthropogenically driven climatic change is expected to reshape global patterns of species distribution and abundance. Given recent links between genetic variation and environmental patterns, climate change may similarly impact genetic population structure, but we lack information on the spatial and mechanistic underpinnings of genetic-climate associations. Here, we show that current genetic variability of Canada lynx (Lynx canadensis) is strongly correlated with a winter climate gradient (i.e. increasing snow depth and winter precipitation from west-to-east) across the Pacific-North American (PNO) to North Atlantic Oscillation (NAO) climatic systems. This relationship was stronger than isolation by distance and not explained by landscape variables or changes in abundance. Thus, these patterns suggest that individuals restricted dispersal across the climate boundary, likely in the absence of changes in habitat quality. We propose habitat imprinting on snow conditions as one possible explanation for this unusual phenomenon. Coupling historical climate data with future projections, we also found increasingly diverging snow conditions between the two climate systems. Based on genetic simulations using projected climate data (2041-2070), we predicted that this divergence could lead to a threefold increase in genetic differentiation, potentially leading to isolated east-west populations of lynx in North America. Our results imply that subtle genetic structure can be governed by current climate and that substantive genetic differentiation and related ecological divergence may arise from changing climate patterns. © 2014 John Wiley & Sons Ltd.

Long-range gene flow and the effects of climatic and ecological factors on genetic structuring in a large, solitary carnivore: the Eurasian lynx.

PubMed

Ratkiewicz, Mirosław; Matosiuk, Maciej; Saveljev, Alexander P; Sidorovich, Vadim; Ozolins, Janis; Männil, Peep; Balciauskas, Linas; Kojola, Ilpo; Okarma, Henryk; Kowalczyk, Rafał; Schmidt, Krzysztof

2014-01-01

Due to their high mobility, large terrestrial predators are potentially capable of maintaining high connectivity, and therefore low genetic differentiation among populations. However, previous molecular studies have provided contradictory findings in relation to this. To elucidate patterns of genetic structure in large carnivores, we studied the genetic variability of the Eurasian lynx, Lynx lynx throughout north-eastern Europe using microsatellite, mitochondrial DNA control region and Y chromosome-linked markers. Using SAMOVA we found analogous patterns of genetic structure based on both mtDNA and microsatellites, which coincided with a relatively little evidence for male-biased dispersal. No polymorphism for the cytochrome b and ATP6 mtDNA genes and Y chromosome-linked markers were found. Lynx inhabiting a large area encompassing Finland, the Baltic countries and western Russia formed a single genetic unit, while some marginal populations were clearly divergent from others. The existence of a migration corridor was suggested to correspond with distribution of continuous forest cover. The lowest variability (in both markers) was found in lynx from Norway and Białowieża Primeval Forest (BPF), which coincided with a recent demographic bottleneck (Norway) or high habitat fragmentation (BPF). The Carpathian population, being monomorphic for the control region, showed relatively high microsatellite diversity, suggesting the effect of a past bottleneck (e.g. during Last Glacial Maximum) on its present genetic composition. Genetic structuring for the mtDNA control region was best explained by latitude and snow cover depth. Microsatellite structuring correlated with the lynx's main prey, especially the proportion of red deer (Cervus elaphus) in its diet. Eurasian lynx are capable of maintaining panmictic populations across eastern Europe unless they are severely limited by habitat continuity or a reduction in numbers. Different correlations of mtDNA and microsatellite

Soft Toys as Instructional Technology in Higher Education: The Case of Llewelyn the Lynx

ERIC Educational Resources Information Center

Raye, Lee

2017-01-01

Scholarship on instructive technologies in higher education has emphasized the use of high-tech facilitative technologies for long-term use, and low-tech props to illustrate single topics. This paper, on the contrary, discusses the use of a long-term, low-tech instructional technology: Llewelyn the Lynx was a soft animal used to assist with…

A Lopsided Lynx

NASA Image and Video Library

2017-12-08

This galaxy, known as NGC 2337, resides 25 million light-years away in the constellation of Lynx. NGC 2337 is an irregular galaxy, meaning that it — along with a quarter of all galaxies in the Universe — lacks a distinct, regular appearance. The galaxy was discovered in 1877 by the French astronomer Édouard Stephan who, in the same year, discovered the galactic group Stephan’s Quintet (heic0910i). Although irregular galaxies may never win a beauty prize when competing with their more symmetrical spiral and elliptical peers, astronomers consider them to be very important. Some irregular galaxies may have once fallen into one of the regular classes of the Hubble sequence, but were warped and deformed by a passing cosmic companion. As such, irregular galaxies provide astronomers with a valuable opportunity to learn more about galactic evolution and interaction. Despite the disruption, gravitational interactions between galaxies can kickstart star formation activity within the affected galaxies, which may explain the pockets of blue light scattered throughout NGC 2337. These patches and knots of blue signal the presence of young, newly formed, hot stars. Image credit: ESA/Hubble & NASA Text credit: European Space Agency NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Identification of volatile components of bobcat (Lynx rufus) urine.

PubMed

Mattina, M J; Pignatello, J J; Swihart, R K

1991-02-01

Bobcat (Lynx rufus) urine reduces scent-marking activity of woodchucks (Marmota monax) and feeding activity of snowshoe hares (Lepus americanus) and deer (Odocoileus virginianus, O. hemionus). In order to identify the semiochemicals responsible for these behavior modifications, a dichloromethane extract of the bobcat urine was analyzed by GC-MS. Among the known compounds identified in the extract are phenol, indole, dimethyl sulfone, and 3-mercapto-3-methylbutanol. Compounds for which spectroscopic data are presented for the first time include one sulfide, two disulfides, and two trisulfides. The sulfur compounds are derived from an amino acid,S-(l,1-dimethyl-3-hydroxypropyl)cysteine ("felinine"), which was identified several years ago in the urine of the domestic cat (Felis domesticus).

Characterization of regionally associated feline immunodeficiency virus (FIV) in bobcats (Lynx rufus).

PubMed

Lagana, Danielle M; Lee, Justin S; Lewis, Jesse S; Bevins, Sarah N; Carver, Scott; Sweanor, Linda L; McBride, Roy; McBride, Caleb; Crooks, Kevin R; VandeWoude, Sue

2013-07-01

Feline immunodeficiency virus (FIV) classically infects felid species with highly divergent species-specific FIVs. However, recent studies have detected an FIV strain infecting both bobcats (Lynx rufus) and pumas (Puma concolor) in California and Florida. To further investigate this observation, we evaluated FIV from bobcats in Florida (n=25) and Colorado (n=80) between 2008 and 2011. Partial viral sequences from five Florida bobcats cluster with previously published sequences from Florida panthers. We did not detect FIV in Colorado bobcats.

Discovery of a large-scale clumpy structure around the Lynx supercluster at z~ 1.27

NASA Astrophysics Data System (ADS)

Nakata, Fumiaki; Kodama, Tadayuki; Shimasaku, Kazuhiro; Doi, Mamoru; Furusawa, Hisanori; Hamabe, Masaru; Kimura, Masahiko; Komiyama, Yutaka; Miyazaki, Satoshi; Okamura, Sadanori; Ouchi, Masami; Sekiguchi, Maki; Ueda, Yoshihiro; Yagi, Masafumi; Yasuda, Naoki

2005-03-01

We report the discovery of a probable large-scale structure composed of many galaxy clumps around the known twin clusters at z= 1.26 and 1.27 in the Lynx region. Our analysis is based on deep, panoramic, and multicolour imaging, 26.4 × 24.1 arcmin2 in VRi'z' bands with the Suprime-Cam on the 8.2-m Subaru telescope. This unique, deep and wide-field imaging data set allows us for the first time to map out the galaxy distribution in the highest-redshift supercluster known. We apply a photometric redshift technique to extract plausible cluster members at z~ 1.27 down to i'= 26.15 (5σ) corresponding to ~M*+ 2.5 at this redshift. From the two-dimensional distribution of these photometrically selected galaxies, we newly identify seven candidates of galaxy groups or clusters where the surface density of red galaxies is significantly high (>5σ), in addition to the two known clusters. These candidates show clear red colour-magnitude sequences consistent with a passive evolution model, which suggests the existence of additional high-density regions around the Lynx superclusters.

Fast rockfall hazard assessment along a road section using the new LYNX Mobile Mapper Lidar

NASA Astrophysics Data System (ADS)

Dario, Carrea; Celine, Longchamp; Michel, Jaboyedoff; Marc, Choffet; Marc-Henri, Derron; Clement, Michoud; Andrea, Pedrazzini; Dario, Conforti; Michael, Leslar; William, Tompkinson

2010-05-01

The terrestrial laser scanning (TLS) is an active remote sensing technique providing high resolution point clouds of the topography. The high resolution digital elevations models (HRDEM) derived of these point clouds are an important tool for the stability analysis of slopes. The LYNX Mobile Mapper is a new TLS generation developed by Optech. Its particularity is to be mounted on a vehicle and providing a 360° high density point cloud at 200-khz measurement rate in a very short acquisition time. It is composed of two sensors improving the resolution and reducing the laser shadowing. The spatial resolution is better than 10 cm at 10 m range and at a velocity of 50 km/h and the reflectivity of the signal is around 20% at a distance of 200 m. The Lidar is also equipped with a DGPS and an inertial measurement unit (IMU) which gives real time position and georeferences directly the point cloud. Thanks to its ability to provide a continuous data set from an extended area along a road, this TLS system is useful for rockfall hazard assessment. In addition, this new scanner decrease considerably the time spent in the field and the postprocessing is reduced thanks to resultant georeferenced data. Nevertheless, its application is limited to an area close to the road. The LYNX has been tested near Pontarlier (France) along roads sections affected by rockfall. Regarding to the tectonic context, the studied area is located in the Folded Jura mainly composed of limestone. The result is a very detailed point cloud with a point spacing of 4 cm. The LYNX presents detailed topography on which a structural analysis has been carried out using COLTOP-3D. It allows obtaining a full structural description along the road. In addition, kinematic tests coupled with probabilistic analysis give a susceptibility map of the road cut or natural cliffs above the road. Comparisons with field survey confirm the Lidar approach.

Characterization of the Commercially-Available Fluorescent Chloroquine-BODIPY Conjugate, LynxTag-CQGREEN, as a Marker for Chloroquine Resistance and Uptake in a 96-Well Plate Assay

PubMed Central

Chan, Kitti W. K.; Choy, Kit-Ying; Rénia, Laurent; Russell, Bruce; Lear, Martin J.; Nosten, François H.; Tan, Kevin S. W.; Chow, Larry M. C.

2014-01-01

Chloroquine was a cheap, extremely effective drug against Plasmodium falciparum until resistance arose. One approach to reversing resistance is the inhibition of chloroquine efflux from its site of action, the parasite digestive vacuole. Chloroquine accumulation studies have traditionally relied on radiolabelled chloroquine, which poses several challenges. There is a need for development of a safe and biologically relevant substitute. We report here a commercially-available green fluorescent chloroquine-BODIPY conjugate, LynxTag-CQGREEN, as a proxy for chloroquine accumulation. This compound localized to the digestive vacuole of the parasite as observed under confocal microscopy, and inhibited growth of chloroquine-sensitive strain 3D7 more extensively than in the resistant strains 7G8 and K1. Microplate reader measurements indicated suppression of LynxTag-CQGREEN efflux after pretreatment of parasites with known reversal agents. Microsomes carrying either sensitive- or resistant-type PfCRT were assayed for uptake; resistant-type PfCRT exhibited increased accumulation of LynxTag-CQGREEN, which was suppressed by pretreatment with known chemosensitizers. Eight laboratory strains and twelve clinical isolates were sequenced for PfCRT and Pgh1 haplotypes previously reported to contribute to drug resistance, and pfmdr1 copy number and chloroquine IC50s were determined. These data were compared with LynxTag-CQGREEN uptake/fluorescence by multiple linear regression to identify genetic correlates of uptake. Uptake of the compound correlated with the logIC50 of chloroquine and, more weakly, a mutation in Pgh1, F1226Y. PMID:25343249

The scientific basis for conserving forest carnivores: American marten, fisher, lynx, and wolverine in the western United States.

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; L. Jack Lyon; William J. Zielinski

1994-01-01

This cooperative effort by USDA Forest Service Research and the National Forest System assesses the state of knowledge related to the conservation status of four forest carnivores in the western United States: American marten, fisher, lynx, and wolverine. The conservation assessment reviews the biology and ecology of these species. It also discusses management...

Antibody detection and molecular characterization of toxoplasma gondii from bobcats (Lynx rufus), domestic cats (Felis catus), and wildlife from Minnesota, USA

USDA-ARS?s Scientific Manuscript database

Little is known of the epidemiology of toxoplasmosis in Minnesota. In this study, we evaluated Toxoplasma gondii infection in 50 wild bobcats (Lynx rufus) and 75 other animals on/near 10 cattle farms. Antibodies to T. gondii were assayed in serum samples or tissue fluids by the modified agglutinatio...

Fast and automated characterization of major constituents in rat biofluid after oral administration of Abelmoschus manihot extract using ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry and MetaboLynx.

PubMed

Guo, Jianming; Shang, Er-Xin; Duan, Jin-Ao; Tang, Yuping; Qian, Dawei; Su, Shulan

2010-02-01

In drug metabolism research, the setting up of a complex series of mass spectrometry experiments and the subsequent analysis of the large amounts of data produced are often time-consuming. In this paper, we describe a strategy using ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry (UPLC/QTOFMS) with automated data analysis software (MetaboLynx) for fast analysis of the metabolic profile of flavonoids in Abelmoschus manihot. Rat plasma and urine samples collected 1 h and 0-12 h after oral administration of Abelmoschus manihot were analyzed by UPLC/QTOFMS within 15 min. The post-acquisition data were processed using MetaboLynx. With key parameters carefully set, MetaboLynx is able to show the presence of a wide range of metabolites with only a limited requirement for manual intervention and data interpretation time. A total of 16 and 38 metabolites were identified in plasma and urine compared with blank samples. The results indicated that methylation and glucuronidation after deglycosylation were the major metabolic pathways of flavonoid glycosides in Abelmoschus manihot. The present study provided important information about the metabolism of flavonoid glycosides in Abelmoschus manihot which will be helpful for fully understanding the mechanism of action of this herb. Furthermore, this work demonstrated the potential of the UPLC/QTOFMS approach using MetaboLynx for fast and automated identification of metabolites from Chinese herbal medicines. Copyright (c) 2010 John Wiley & Sons, Ltd.

Comparison of Hybrid K-Edge Densitometer (HKED) Performance Operating with the Canberra Lynx MCA and the Canberra ICB-NIM Electronics

DOE Office of Scientific and Technical Information (OSTI.GOV)

McElroy, Robert Dennis

From the 1991 until 2008 the Canberra Hybrid K-Edge Densitometer systems were provided with ICB-NIM (Integrated Control Bus – Nuclear Instrument Module) acquisition electronics. Newer electronics modules, such as the Lynx, were not supported under the VMS based operating system. The LYNX module was provided as the standard acquisition electronics following the release of the Windows based CHKED software. This report compares the electronics dead-time, gain shifts, detector resolution and measurement performance of the HKED system operated with the two types of acquisition modules. The comparison was performed using measurements obtained with the ORNL HKED system. The original intent ofmore » this study was to take advantage of both the timing and energy outputs from the HPGE detector to acquire data with both sets of electronics in parallel. Although this approach has been applied successfully with other systems, in this case we found the timing output produced a significant amount of noise such that a comparison between the electronics would be invalid. So the comparative measurements were performed sequentially. The ICB-NIM data was acquired over the course of 12 months with 255 measurements while the LYNX data was acquired over a period of 10 months with 75 measurements. To simplify the comparison, all data used in this study was acquired using the Canberra CHKED (V1.0) software package. The performance analysis was based primarily on the peak locations, peak widths and concentration values reported by the CHKED software. The raw spectra from the XRF measurements were also examined to extract additional 109Cd peak location and width data for the hybrid measurements (the standard hybrid report template does not report these values).« less

Lynx: Automatic Elderly Behavior Prediction in Home Telecare

PubMed Central

Lopez-Guede, Jose Manuel; Moreno-Fernandez-de-Leceta, Aitor; Martinez-Garcia, Alexeiw; Graña, Manuel

2015-01-01

This paper introduces Lynx, an intelligent system for personal safety at home environments, oriented to elderly people living independently, which encompasses a decision support machine for automatic home risk prevention, tested in real-life environments to respond to real time situations. The automatic system described in this paper prevents such risks by an advanced analytic methods supported by an expert knowledge system. It is minimally intrusive, using plug-and-play sensors and machine learning algorithms to learn the elder's daily activity taking into account even his health records. If the system detects that something unusual happens (in a wide sense) or if something is wrong relative to the user's health habits or medical recommendations, it sends at real-time alarm to the family, care center, or medical agents, without human intervention. The system feeds on information from sensors deployed in the home and knowledge of subject physical activities, which can be collected by mobile applications and enriched by personalized health information from clinical reports encoded in the system. The system usability and reliability have been tested in real-life conditions, with an accuracy larger than 81%. PMID:26783514

Lynx: Automatic Elderly Behavior Prediction in Home Telecare.

PubMed

Lopez-Guede, Jose Manuel; Moreno-Fernandez-de-Leceta, Aitor; Martinez-Garcia, Alexeiw; Graña, Manuel

2015-01-01

This paper introduces Lynx, an intelligent system for personal safety at home environments, oriented to elderly people living independently, which encompasses a decision support machine for automatic home risk prevention, tested in real-life environments to respond to real time situations. The automatic system described in this paper prevents such risks by an advanced analytic methods supported by an expert knowledge system. It is minimally intrusive, using plug-and-play sensors and machine learning algorithms to learn the elder's daily activity taking into account even his health records. If the system detects that something unusual happens (in a wide sense) or if something is wrong relative to the user's health habits or medical recommendations, it sends at real-time alarm to the family, care center, or medical agents, without human intervention. The system feeds on information from sensors deployed in the home and knowledge of subject physical activities, which can be collected by mobile applications and enriched by personalized health information from clinical reports encoded in the system. The system usability and reliability have been tested in real-life conditions, with an accuracy larger than 81%.

Performance and loads data from an outdoor hover test of a Lynx tail rotor

NASA Technical Reports Server (NTRS)

Signor, David B.; Yamauchi, Gloria K.; Smith, Charles A.; Hagen, Martin J.

1989-01-01

A Lynx tail rotor was tested in hover at the Outdoor Aerodynamic Research Facility at NASA Ames Research Center. The test objectives were to measure the isolated rotor performance to provide a baseline for subsequent testing, and to operate the rotor throughout the speed and collective envelope before testing in the NFAC 40- by 80-Foot Wind Tunnel. Rotor forces and blade bending moments were measured at ambient wind conditions from zero to 6.23 m/sec. The test envelope was limited to rotor speeds of 1550 to 1850 rpm and minus 13 deg to plus 20 deg of blade collective pitch. The isolated rotor performance and blade loads data are presented.

Real time UNIX in embedded control -- A case study within context of LynxOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kleines, H.; Zwoll, K.

1996-02-01

Intelligent communication controllers for a layered protocol profile are a typical example of an embedded control application, where the classical approach for the software development is based on a proprietary real-time operating system kernel under which the individual layers are implemented as tasks. Based on the exemplary implementation of a derivative of MAP 3.0, an unusual and innovative approach is presented, where the protocol software is implemented under the UNIX-compatible real-time operating system LynxOS. The overall design of the embedded control application is presented under a more general view and economical implications as well as aspects of the development environmentmore » and performance are discussed.« less

Real time UNIX in embedded control-a case study within the context of LynxOS

NASA Astrophysics Data System (ADS)

Kleines, H.; Zwoll, K.

1996-02-01

Intelligent communication controllers for a layered protocol profile are a typical example of an embedded control application, where the classical approach for the software development is based on a proprietary real-time operating system kernel under which the individual layers are implemented as tasks. Based on the exemplary implementation of a derivative of MAP 3.0, an unusual and innovative approach is presented, where the protocol software is implemented under the UNIX-compatible real-time operating system LynxOS. The overall design of the embedded control application is presented under a more general view and economical implications as well as aspects of the development environment and performance are discussed

Valuing the chances of survival of two distinct Eurasian lynx populations in Poland - do people want to keep the doors open?

PubMed

Bartczak, Anna; Meyerhoff, Jürgen

2013-11-15

This study investigates individuals' preferences toward protection programs aimed at increasing the chances of survival of the two distinct Eurasian lynx populations in Poland. Those two groups, the Lowland and the Carpathian population, are exposed to different risks of extinction as they have different numbers, different-sized areas of occupation and different migration possibilities. Using a discrete choice experiment we examine the influence of the initial degree of endangerment on the allocation of respondents' funds. The results show that people prefer to invest in the conservation of the lynx population, which has initially lower chances of survival. The main driver of respondents' choices seems to be loss aversion rather than the urge to invest in an option with an expected higher outcome. This observation can be interpreted as people trying to keep all the options - doors - open by devoting more funds to the more vulnerable population than to the more stable one. Employing a scale-extended latent class model allowed us to detect segments among individuals showing different types of response behavior, including a form of serial non-participation. Copyright © 2013 Elsevier Ltd. All rights reserved.

Hubble Spots a Barred Lynx Spiral

NASA Image and Video Library

2017-12-08

Discovered by British astronomer William Herschel over 200 years ago, NGC 2500 lies about 30 million light-years away in the northern constellation of Lynx. As this NASA/ESA Hubble Space Telescope image shows, NGC 2500 is a particular kind of spiral galaxy known as a barred spiral, its wispy arms swirling out from a bright, elongated core. Barred spirals are actually more common than was once thought. Around two-thirds of all spiral galaxies — including the Milky Way — exhibit these straight bars cutting through their centers. These cosmic structures act as glowing nurseries for newborn stars, and funnel material towards the active core of a galaxy. NGC 2500 is still actively forming new stars, although this process appears to be occurring very unevenly. The upper half of the galaxy — where the spiral arms are slightly better defined — hosts many more star-forming regions than the lower half, as indicated by the bright, dotted islands of light. There is another similarity between NGC 2500 and our home galaxy. Together with Andromeda, Triangulum and many smaller natural satellites, the Milky Way is part of the Local Group of galaxies, a gathering of over 50 galaxies all loosely held together by gravity. NGC 2500 forms a similar group with some of its nearby neighbors, including NGC 2541, NGC 2552, NGC 2537 and the bright, Andromeda-like spiral NGC 2481 (known collectively as the NGC 2841 group). Image Credit: ESA/Hubble/NASA NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

First evidence of hemoplasma infection in free-ranging Namibian cheetahs (Acinonyx jubatus).

PubMed

Krengel, Annika; Meli, Marina L; Cattori, Valentino; Wachter, Bettina; Willi, Barbara; Thalwitzer, Susanne; Melzheimer, Jörg; Hofer, Heribert; Lutz, Hans; Hofmann-Lehmann, Regina

2013-03-23

Infections with feline hemotropic mycoplasmas (hemoplasmas) have been documented in domestic cats and free-ranging feline species with high prevalences in Iberian lynxes (Lynx pardinus), Eurasian lynxes (Lynx lynx), European wildcats (Felis silvestris silvestris), African lions (Panthera leo) in Tanzania and domestic cats in South Africa. The prevalence of hemoplasmas has not yet been investigated in free-ranging felids in southern Africa. In this study we screened 73 blood samples from 61 cheetahs in central Namibia for the presence of hemoplasmas using quantitative real-time PCR. One of the cheetahs tested PCR-positive. Phylogenetic analysis based on partial sequencing of the 16S rRNA and RNAse P genes revealed that the isolate belongs to the Mycoplasma haemofelis/haemocanis group. This is the first molecular evidence of a hemoplasma infection in a free-ranging cheetah. Copyright © 2012 Elsevier B.V. All rights reserved.

Discovery of a large-scale clumpy structure of the Lynx supercluster at z[similar]1.27

NASA Astrophysics Data System (ADS)

Nakata, Fumiaki; Kodama, Tadayuki; Shimasaku, Kazuhiro; Doi, Mamoru; Furusawa, Hisanori; Hamabe, Masaru; Kimura, Masahiko; Komiyama, Yutaka; Miyazaki, Satoshi; Okamura, Sadanori; Ouchi, Masami; Sekiguchi, Maki; Yagi, Masafumi; Yasuda, Naoki

2004-07-01

We report the discovery of a probable large-scale structure composed of many galaxy clumps around the known twin clusters at z=1.26 and z=1.27 in the Lynx region. Our analysis is based on deep, panoramic, and multi-colour imaging with the Suprime-Cam on the 8.2 m Subaru telescope. We apply a photometric redshift technique to extract plausible cluster members at z˜1.27 down to ˜ M*+2.5. From the 2-D distribution of these photometrically selected galaxies, we newly identify seven candidates of galaxy groups or clusters where the surface density of red galaxies is significantly high (>5σ), in addition to the two known clusters, comprising the largest most distant supercluster ever identified.

The effect of climatic forcing on population synchrony and genetic structuring of the Canadian lynx

PubMed Central

Stenseth, Nils Chr.; Ehrich, Dorothee; Rueness, Eli Knispel; Lingjærde, Ole Chr.; Chan, Kung-Sik; Boutin, Stan; O'Donoghue, Mark; Robinson, David A.; Viljugrein, Hildegunn; Jakobsen, Kjetill S.

2004-01-01

The abundance of Canadian lynx follows 10-year density fluctuations across the Canadian subcontinent. These cyclic fluctuations have earlier been shown to be geographically structured into three climatic regions: the Atlantic, Continental, and Pacific zones. Recent genetic evidence revealed an essentially similar spatial structuring. Introducing a new population model, the “climate forcing of ecological and evolutionary patterns” model, we link the observed ecological and evolutionary patterns. Specifically, we demonstrate that there is greater phase synchrony within climatic zones than between them and show that external climatic forcing may act as a synchronizer. We simulated genetic drift by using data on population dynamics generated by the climate forcing of ecological and evolutionary patterns model, and we demonstrate that the observed genetic structuring can be seen as an emerging property of the spatiotemporal ecological dynamics. PMID:15067131

[Early sibling aggression in mammals and its hormonal correlates].

PubMed

Antonevich, A L; Naĭdenko, S V

2007-01-01

Early sibling aggression is a widespread phenomenon in birds. Ornithologists distinguish species with "obligate" and "facultative" siblicide. Sibling aggression was described in some mammal species: the domestic pig (Sus scrofa), the spotted hyena (Crocuta crocuta), the Eurasian lynx (Lynx lynx), and the Iberian lynx (L. par-dinus). In all of them, sibling aggression corresponds well with the "facultative" siblicide model in birds. Sibling aggression was observed at the age of 36-64 days in both lynx species. It is usually restricted to a single fight and can change the hierarchical structure and growth rate of the kittens. In the spotted hyena and the domestic pig, the frequency and intensity of aggressive interactions between siblings are strongest during the first days of postnatal ontogeny and then decrease gradually. The newborns of these species are much developed than newborn lynx kittens. Usually adult lynx females, in contrast to hyenas and pigs, try to stop sibling fights. This is probably related to the larger parental investment at the time of the fight in lynxes (a kitten's body weight is about 10% of the mother's) than in pigs (0.5%) and hyenas (1.9%). Sibling aggression in spotted hyenas could be related to the high level of androstenedione and is not related to testosterone concentration. In the Eurasian lynx, female sibs attack their littermates slightly more often than male sibs do, and sibling aggression is not testosterone-dependent. Hormones secreted by the adrenal glands may play an important role in this phenomenon. The data available so far, however, do not positively confirm the presence of hormonal trigger effects in mammal sibling aggression.

Pre-layout AC decoupling analysis with Mentor Graphics HyperLynx

NASA Astrophysics Data System (ADS)

Hnatiuc, Mihaela; Iov, Cǎtǎlin J.

2015-02-01

Considerable resources have been used since the humans got interested to discover the world around. Any discovery and science advance was taken tremendously amount of time, money, sometimes lives. All of these define the cost of a discovery, developing process. Getting back to electronics, this field faced in the last 20-30 years, a big boom in terms of technologies and opportunities. Thousands of equipment were developed and placed on the market. The big difference between various competitors is made at the moment by that we call the time to market. A mobile, for instance, has a time to market of around 6 months and the tendency is to have it smaller than that. That means between the concept and the first model sale, no more than 6 months should be passing. That is why new approaches are needed. The one extensively used now is the simulation. We call the simulation virtual prototyping. The virtual prototyping takes into account more than the components only. It takes into account some other project parameters that would affect the final product. Certified tools can handle such analysis. In our paper we present the case of HyperLynx, a concept developed by Mentor Graphics Company, assisting the hardware designer throughout the designing process, from thermal point of view. A test case board was analyzed at the pre-layout stage and the results presented.

Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs

PubMed Central

Monterroso, Pedro; Garrote, Germán; Serronha, Ana; Santos, Emídio; Delibes-Mateos, Miguel; Abrantes, Joana; Perez de Ayala, Ramón; Silvestre, Fernando; Carvalho, João; Vasco, Inês; Lopes, Ana M.; Maio, Elisa; Magalhães, Maria J.; Mills, L. Scott; Esteves, Pedro J.; Simón, Miguel Ángel; Alves, Paulo C.

2016-01-01

Emergent diseases may alter the structure and functioning of ecosystems by creating new biotic interactions and modifying existing ones, producing cascading processes along trophic webs. Recently, a new variant of the rabbit haemorrhagic disease virus (RHDV2 or RHDVb) arguably caused widespread declines in a keystone prey in Mediterranean ecosystems - the European rabbit (Oryctolagus cuniculus). We quantitatively assess the impact of RHDV2 on natural rabbit populations and in two endangered apex predator populations: the Iberian lynx (Lynx pardinus) and the Spanish Imperial eagle (Aquila adalberti). We found 60–70% declines in rabbit populations, followed by decreases of 65.7% in Iberian lynx and 45.5% in Spanish Imperial eagle fecundities. A revision of the web of trophic interactions among rabbits and their dependent predators suggests that RHDV2 acts as a keystone species, and may steer Mediterranean ecosystems to management-dependent alternative states, dominated by simplified mesopredator communities. This model system stresses the importance of diseases as functional players in the dynamics of trophic webs. PMID:27796353

Responses of a top and a meso predator and their prey to moon phases.

PubMed

Penteriani, Vincenzo; Kuparinen, Anna; del Mar Delgado, Maria; Palomares, Francisco; López-Bao, José Vicente; Fedriani, José María; Calzada, Javier; Moreno, Sacramento; Villafuerte, Rafael; Campioni, Letizia; Lourenço, Rui

2013-11-01

We compared movement patterns and rhythms of activity of a top predator, the Iberian lynx Lynx pardinus, a mesopredator, the red fox Vulpes vulpes, and their shared principal prey, the rabbit Oryctolagus cuniculus, in relation to moon phases. Because the three species are mostly nocturnal and crepuscular, we hypothesized that the shared prey would reduce its activity at most risky moon phases (i.e. during the brightest nights), but that fox, an intraguild prey of lynx, would avoid lynx activity peaks at the same time. Rabbits generally moved further from their core areas on darkest nights (i.e. new moon), using direct movements which minimize predation risk. Though rabbits responded to the increased predation risk by reducing their activity during the full moon, this response may require several days, and the moon effect we observed on the rabbits had, therefore, a temporal gap. Lynx activity patterns may be at least partially mirroring rabbit activity: around new moons, when rabbits moved furthest and were more active, lynxes reduced their travelling distances and their movements were concentrated in the core areas of their home ranges, which generally correspond to areas of high density of rabbits. Red foxes were more active during the darkest nights, when both the conditions for rabbit hunting were the best and lynxes moved less. On the one hand, foxes increased their activity when rabbits were further from their core areas and moved with more discrete displacements; on the other hand, fox activity in relation to the moon seemed to reduce dangerous encounters with its intraguild predator.

Study of the Lynx-Cancer void galaxies. - V. The extremely isolated galaxy UGC 4722

NASA Astrophysics Data System (ADS)

Chengalur, J. N.; Pustilnik, S. A.; Makarov, D. I.; Perepelitsyna, Y. A.; Safonova, E. S.; Karachentsev, I. D.

2015-04-01

We present a detailed study of the extremely isolated Sdm galaxy UGC 4722 (MB = -17.4) located in the nearby Lynx-Cancer void. UGC 4722 is a member of the Catalogue of Isolated Galaxies, and has also been identified as one of the most isolated galaxies in the Local Supercluster. Optical images of the galaxy however show that it has a peculiar morphology with an elongated ˜14 kpc-long plume. New observations with the Russian 6-m telescope (BTA) and the Giant Metrewave Radio Telescope (GMRT) of the ionized and neutral gas in UGC 4722 reveal the second component responsible for the disturbed morphology of the system. This is a small, almost completely destroyed, very gas-rich dwarf (MB = -15.2, M(H I)/LB ˜ 4.3) We estimate the oxygen abundance for both galaxies to be 12 + log (O/H) ˜ 7.5-7.6 which is two to three times lower than what is expected from the luminosity-metallicity relation for similar galaxies in denser environments. The ugr colours of the plume derived from Sloan Digital Sky Survey (SDSS) images are consistent with a simple stellar population with a post starburst age of 0.45-0.5 Gyr. This system hence appears to be the first known case of a minor merger with a prominent tidal feature consisting of a young stellar population.

Thin fused silica shells for high-resolution and large collecting area x-ray telescopes (like Lynx/XRS)

NASA Astrophysics Data System (ADS)

Civitani, M. M.; Hołyszko, J.; Vecchi, G.; Basso, S.; Citterio, O.; Ghigo, M.; Pareschi, G.; Parodi, G.; Incorvaia, S.

2017-09-01

The implementation of an X-ray mission with high imaging capabilities, similar to those achieved with Chandra (< 1 arc second Half Energy Width, HEW), but with a much larger throughput (2.5 m2 effective area @1 keV), represents a compelling request by the scientific community. To this end the Lynx/XRS mission is being studied in USA, with the participation of international partners. In order to figure out the challenging technological task of the mirror fabrication, different approaches are considered, based on monolithic and segmented shells. Starting from the experience done on the glass prototypal shell realized in the past years, the direct polishing of thin (2 mm thick) fused silica monolithic shells is being investigated as a possible solution. A temporary stiffening structure is designed to support the shell during the figuring and polishing operations and to manage the handling up to its integration in the telescope structure. After the grinding and the polishing phases, in order to achieve the required surface accuracy, a final ion beam figuring correction is foreseen. In this paper, we present the technological process and the results achieved so far on a prototypal shell under development.

Prevalence of Toxoplasma gondii and Neosport caninum antibodies in Spanish ibex (Capra pryenaica hispanica)

USDA-ARS?s Scientific Manuscript database

Wild felids are considered important in maintaining the sylvatic cycle of Toxoplasma gondii. Although, T. gondii antibodies have been reported in several species of wild felids, little is known of the epidemiology and risk factors associated with T. gondii infection in wild cats. The Iberian lynx (L...

Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape

USGS Publications Warehouse

Lee, Justin S.; Ruell, Emily W.; Boydston, Erin E.; Lyren, Lisa M.; Alonso, Robert S.; Troyer, Jennifer L.; Crooks, Kevin R.; VandeWoude, Sue

2012-01-01

Urbanization can result in the fragmentation of once contiguous natural landscapes into a patchy habitat interspersed within a growing urban matrix. Animals living in fragmented landscapes often have reduced movement among habitat patches because of avoidance of intervening human development, which potentially leads to both reduced gene flow and pathogen transmission between patches. Mammalian carnivores with large home ranges, such as bobcats (Lynx rufus), may be particularly sensitive to habitat fragmentation. We performed genetic analyses on bobcats and their directly transmitted viral pathogen, feline immunodeficiency virus (FIV), to investigate the effects of urbanization on bobcat movement. We predicted that urban development, including major freeways, would limit bobcat movement and result in genetically structured host and pathogen populations. We analysed molecular markers from 106 bobcats and 19 FIV isolates from seropositive animals in urban southern California. Our findings indicate that reduced gene flow between two primary habitat patches has resulted in genetically distinct bobcat subpopulations separated by urban development including a major highway. However, the distribution of genetic diversity among FIV isolates determined through phylogenetic analyses indicates that pathogen genotypes are less spatially structured--exhibiting a more even distribution between habitat fragments. We conclude that the types of movement and contact sufficient for disease transmission occur with enough frequency to preclude structuring among the viral population, but that the bobcat population is structured owing to low levels of effective bobcat migration resulting in gene flow. We illustrate the utility in using multiple molecular markers that differentially detect movement and gene flow between subpopulations when assessing connectivity.

Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America

USGS Publications Warehouse

Lee, Justin S.; Bevins, Sarah N.; Serieys, Laurel E.K.; Vickers, Winston; Logan, Ken A.; Aldredge, Mat; Boydston, Erin E.; Lyren, Lisa M.; McBride, Roy; Roelke-Parker, Melody; Pecon-Slattery, Jill; Troyer, Jennifer L.; Riley, Seth P.; Boyce, Walter M.; Crooks, Kevin R.; VandeWoude, Sue

2014-01-01

Mountain lions (Puma concolor) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats (Lynx rufus) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories.

Study of galaxies in the Lynx-Cancer void - VII. New oxygen abundances

NASA Astrophysics Data System (ADS)

Pustilnik, S. A.; Perepelitsyna, Y. A.; Kniazev, A. Y.

2016-11-01

We present new or improved oxygen abundances (O/H) for the nearby Lynx-Cancer void updated galaxy sample. They are obtained via the SAO 6-m telescope spectroscopy (25 objects), or derived from the Sloan Digital Sky Survey spectra (14 galaxies, of which for seven objects O/H values were unknown). For eight galaxies with detected [O III] λ4363 line, O/H values are derived via the direct (Te) method. For the remaining objects, O/H was estimated via semi-empirical and empirical methods. For all accumulated O/H data for 81 galaxies of this void (with 40 of them derived via Te method), their relation `O/H versus MB' is compared with that for similar late-type galaxies from denser environments (the Local Volume `reference sample'). We confirm our previous conclusion derived for a subsample of 48 objects: void galaxies show systematically reduced O/H for the same luminosity with respect to the reference sample, in average by 0.2 dex, or by a factor of ˜1.6. Moreover, we confirm the fraction of ˜20 per cent of strong outliers, with O/H of two to four times lower than the typical values for the `reference' sample. The new data are consistent with the conclusion on the slower evolution of the main void galaxy population. We obtained Hα velocity for the faint optical counterpart of the most gas-rich (M(H I)/LB = 25) void object J0723+3624, confirming its connection with the respective H I blob. For similar extremely gas-rich dwarf J0706+3020, we give a tentative O/H ˜(O/H)⊙/45. In Appendix A, we present the results of calibration of semi-empirical method by Izotov & Thuan and of empirical calibrators by Pilyugin & Thuan and Yin et al. on the sample of ˜150 galaxies from the literature with O/H measured by Te method.

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, T.M.; Freeman, M.; Abouelezz, H.; Royar, Kim; Howard, A.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4. h for 3-4. months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat's home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike's Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual's UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1. km of a location, and negative responses to roads and mixed forest cover types within 1. km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between -1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating that home

Key role of European rabbits in the conservation of the Western Mediterranean basin hotspot.

PubMed

Delibes-Mateos, Miguel; Delibes, Miguel; Ferreras, Pablo; Villafuerte, Rafael

2008-10-01

The Mediterranean Basin is a global hotspot of biodiversity. Hotspots are said to be experiencing a major loss of habitat, but an added risk could be the decline of some species having a special role in ecological relationships of the system. We reviewed the role of European rabbits (Oryctolagus cuniculus) as a keystone species in the Iberian Peninsula portion of the Mediterranean hotspot. Rabbits conspicuously alter plant species composition and vegetation structure through grazing and seed dispersal, which creates open areas and preserves plant species diversity. Moreover, rabbit latrines have a demonstrable effect on soil fertility and plant growth and provide new feeding resources for many invertebrate species. Rabbit burrows provide nest sites and shelter for vertebrates and invertebrates. In addition, rabbits serve as prey for a number of predators, including the critically endangered Iberian lynx (Lynx pardinus) and Spanish Imperial Eagle (Aquila adalberti). Thus, the Mediterranean ecosystem of the Iberian Peninsula should be termed "the rabbit's ecosystem." To our knowledge, this is the first empirical support for existence of a multifunctional keystone species in a global hotspot of biodiversity. Rabbit populations have declined drastically on the Iberian Peninsula, with potential cascading effects and serious ecological and economic consequences. From this perspective, rabbit recovery is one of the biggest challenges for conservation of the Mediterranean Basin hotspot.

Bobcats ( Lynx rufus) as a Model Organism to Investigate the Effects of Roads on Wide-Ranging Carnivores

NASA Astrophysics Data System (ADS)

Litvaitis, John A.; Reed, Gregory C.; Carroll, Rory P.; Litvaitis, Marian K.; Tash, Jeffrey; Mahard, Tyler; Broman, Derek J. A.; Callahan, Catherine; Ellingwood, Mark

2015-06-01

We are using bobcats ( Lynx rufus) as a model organism to examine how roads affect the abundance, distribution, and genetic structure of a wide-ranging carnivore. First, we compared the distribution of bobcat-vehicle collisions to road density and then estimated collision probabilities for specific landscapes using a moving window with road-specific traffic volume. Next, we obtained incidental observations of bobcats from the public, camera-trap detections, and locations of bobcats equipped with GPS collars to examine habitat selection. These data were used to generate a cost-surface map to investigate potential barrier effects of roads. Finally, we have begun an examination of genetic structure of bobcat populations in relation to major road networks. Distribution of vehicle-killed bobcats was correlated with road density, especially state and interstate highways. Collision models suggested that some regions may function as demographic sinks. Simulated movements in the context of the cost-surface map indicated that some major roads may be barriers. These patterns were supported by the genetic structure of bobcats. The sharpest divisions among genetically distinct demes occurred along natural barriers (mountains and large lakes) and in road-dense regions. In conclusion, our study has demonstrated the utility of using bobcats as a model organism to understand the variety of threats that roads pose to a wide-ranging species. Bobcats may also be useful as one of a group of focal species while developing approaches to maintain existing connectivity or mitigate the negative effects of roads.

Bobcats (Lynx rufus) as a Model Organism to Investigate the Effects of Roads on Wide-Ranging Carnivores.

PubMed

Litvaitis, John A; Reed, Gregory C; Carroll, Rory P; Litvaitis, Marian K; Tash, Jeffrey; Mahard, Tyler; Broman, Derek J A; Callahan, Catherine; Ellingwood, Mark

2015-06-01

We are using bobcats (Lynx rufus) as a model organism to examine how roads affect the abundance, distribution, and genetic structure of a wide-ranging carnivore. First, we compared the distribution of bobcat-vehicle collisions to road density and then estimated collision probabilities for specific landscapes using a moving window with road-specific traffic volume. Next, we obtained incidental observations of bobcats from the public, camera-trap detections, and locations of bobcats equipped with GPS collars to examine habitat selection. These data were used to generate a cost-surface map to investigate potential barrier effects of roads. Finally, we have begun an examination of genetic structure of bobcat populations in relation to major road networks. Distribution of vehicle-killed bobcats was correlated with road density, especially state and interstate highways. Collision models suggested that some regions may function as demographic sinks. Simulated movements in the context of the cost-surface map indicated that some major roads may be barriers. These patterns were supported by the genetic structure of bobcats. The sharpest divisions among genetically distinct demes occurred along natural barriers (mountains and large lakes) and in road-dense regions. In conclusion, our study has demonstrated the utility of using bobcats as a model organism to understand the variety of threats that roads pose to a wide-ranging species. Bobcats may also be useful as one of a group of focal species while developing approaches to maintain existing connectivity or mitigate the negative effects of roads.

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2014 CFR

2014-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear harvested in... trade internationally in fur skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf... lynx (Lynx canadensis), gray wolf (Canis lupus), and brown bear (Ursus arctos) harvested in the United...

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, Therese; Freeman, Mark; Abouelezz, Hanem; Royar, Kim; Howard, Alan D.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4 h for 3–4 months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat’s home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike’s Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual’s UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1 km of a location, and negative responses to roads and mixed forest cover types within 1 km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between −1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2010 CFR

2010-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2011 CFR

2011-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2013 CFR

2013-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

Quantification of the humoral immune response and hemoplasma blood and tissue loads in cats coinfected with 'Candidatus Mycoplasma haemominutum' and feline leukemia virus.

PubMed

Wolf-Jäckel, Godelind A; Cattori, Valentino; Geret, Catrina P; Novacco, Marilisa; Meli, Marina L; Riond, Barbara; Boretti, Felicitas S; Lutz, Hans; Hofmann-Lehmann, Regina

2012-08-01

'Candidatus Mycoplasma haemominutum' (CMhm) is a hemotropic mycoplasma (aka hemoplasma) of domestic cats and wild felids. In a transmission study, we exposed eight specified pathogen-free cats to blood from Iberian lynxes (Lynx pardinus) infected with CMhm. The cats were coinfected with feline leukemia virus (FeLV) from an Iberian lynx or with a prototype FeLV. The goal of the present study was to quantify the humoral immune response to CMhm and to identify potential target tissues and sequestration sites. Antibodies were measured by a recombinant antigen-based enzyme-linked immunosorbent assay, and blood and tissue loads were quantified using real-time PCR. Seven out of eight cats became CMhm-infected; all of these cats seroconverted between 3 and 13 weeks after inoculation. Antibody levels correlated with the CMhm blood loads. The peak CMhm blood loads were inversely correlated with the incubation period. PCR-positive results were found in all 24 tissues tested but not for all samples. Although all tissues were PCR-positive in one cat euthanized ten weeks after infection, many tissues tested negative in six cats euthanized at week 20 after infection. In several cats, the spleen, lung, liver, heart and aorta contained more copies than expected given the tissue's blood supply, but most tissues contained fewer copies than expected. In conclusion, this is the first study to quantify the humoral immune response and tissue loads in CMhm-FeLV-coinfected cats. The tissue loads appeared to correlate with the duration of infection and with the blood loads, but no evidence of significant CMhm tissue sequestration was found. Copyright © 2012 Elsevier Ltd. All rights reserved.

Variability in assays used for detection of lentiviral infection in bobcats (Lynx rufus), pumas (Puma concolor), and ocelots (Leopardus pardalis)

USGS Publications Warehouse

Franklin, S.P.; Troyer, J.L.; TerWee, J.A.; Lyren, L.M.; Kays, R.W.; Riley, S.P.D.; Boyce, W.M.; Crooks, K.R.; VandeWoude, S.

2007-01-01

Although lentiviruses similar to feline immunodeficiency virus (FIV) are known to infect numerous felid species, the relative utility of assays used for detecting lentiviral infection has not been compared for many of these hosts. We tested bobcats (Lynx rufus), pumas (Felis concolor), and ocelots (Leopardus pardalis) for exposure to lentivirus using five different assays: puma lentivirus (PLV), African lion lentivirus (LLV), and domestic cat FIV-based immunoblots, a commercially available enzyme-linked immunosorbent assay (ELISA) kit, and nested polymerase chain reaction (PCR). Puma lentivirus immunoblots identified more seropositive individuals than the other antibody-detection assays. The commercial ELISA provided a fair ability to recognize seropositive samples when compared with PLV immunoblot for screening bobcats and ocelots, but not pumas. Polymerase chain reaction identified fewer positive samples than PLV immunoblot for all three species. Immunoblot results were equivalent whether the sample tested was serum, plasma, or whole blood. The results from this study and previous investigations suggest that the PLV immunoblot has the greatest ability to detect reactive samples when screening wild felids of North America and is unlikely to produce false positive results. However, the commercial ELISA kit may provide ap adequate alternative for screening of some species and is more easily adapted to field conditions. ?? Wildlife Disease Association 2007.

Hugoniot Models for Na and LiF from LEOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitley, Heather D.; Wu, Christine J.

2016-10-12

In this document, we provide the Hugoniot for sodium from two models: LEOS table L110 and Lynx table 110. We also provide the Hugoniot for lithium fluoride from LEOS (L2240) and Lynx (2240). The Hugoniot pressures are supplied for temperatures between 338.0 and 1.16×10 9 Kelvin and densities between 0.968 and 11.5 g/cc. These LEOS models were developed by the quotidian EOS methodology, which is a widely used and robust method for producing tabular EOS data. Tables list the model data for LEOS 110, Lynx 110, LEOS 2240, and Lynx 2240. The Lynx models follow the same methodology as themore » LEOS models; however, the Purgatorio average-atom DFT code was used to compute the electron thermal part of the EOS. The models for Lynx are only listed at high compression due to known issues with the Lynx library at lower pressures.« less

Serum chemistry, hematologic, and post-mortem findings in free-ranging bobcats (Lynx rufus) with notoedric mange

USGS Publications Warehouse

Serieys, Laurel E.K.; Foley, Janet; Owens, Sean; Woods, Leslie; Boydston, Erin E.; Lyren, Lisa M.; Poppenga, Robert H.; Clifford, Deana L.; Stephenson, Nicole; Rudd, Jaime; Riley, Seth P.D.

2013-01-01

Notoedric mange was responsible for a population decline of bobcats (Lynx rufus) in 2 Southern California counties from 2002–2006 and is now reported to affect bobcats in Northern and Southern California. With this study we document clinical laboratory and necropsy findings for bobcats with mange. Bobcats in this study included free-ranging bobcats with mange (n = 34), a control group of free-ranging bobcats without mange (n = 11), and a captive control group of bobcats without mange (n = 19). We used 2 control groups to evaluate potential anomalies due to capture stress or diet. Free-ranging healthy and mange-infected bobcats were trapped or salvaged. Animals were tested by serum biochemistry, complete blood count, urine protein and creatinine, body weight, necropsy, and assessment for anticoagulant rodenticide residues in liver tissue. Bobcats with severe mange were emaciated, dehydrated, and anemic with low serum creatinine, hyperphosphatemia, hypoglycemia, hypernatremia, and hyperchloremia, and sometimes septicemic when compared to control groups. Liver enzymes and leukocyte counts were elevated in free-ranging, recently captured bobcats whether or not they were infested with mange, suggesting capture stress. Bobcats with mange had lower levels of serum cholesterol, albumin, globulin, and total protein due to protein loss likely secondary to severe dermatopathy. Renal insufficiency was unlikely in most cases, as urine protein:creatinine ratios were within normal limits. A primary gastrointestinal loss of protein or blood was possible in a few cases, as evidenced by elevated blood urea nitrogen, anemia, intestinal parasitism, colitis, gastric hemorrhage, and melena. The prevalence of exposure to anticoagulant rodenticides was 100% (n = 15) in bobcats with mange. These findings paint a picture of debilitating, multisystemic disease with infectious and toxic contributing factors that can progress to death in individuals and potential decline in populations.

Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America.

PubMed

Lee, Justin S; Bevins, Sarah N; Serieys, Laurel E K; Vickers, Winston; Logan, Ken A; Aldredge, Mat; Boydston, Erin E; Lyren, Lisa M; McBride, Roy; Roelke-Parker, Melody; Pecon-Slattery, Jill; Troyer, Jennifer L; Riley, Seth P; Boyce, Walter M; Crooks, Kevin R; VandeWoude, Sue

2014-07-01

Mountain lions (Puma concolor) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats (Lynx rufus) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories. Importance: An understanding of viral evolution in natural host populations is a fundamental goal of virology, molecular biology, and disease ecology. Here we provide a detailed analysis of puma lentivirus (PLV) evolution in two natural carnivore hosts, the bobcat and mountain lion. Our results illustrate that PLV evolution is a dynamic process that results from high rates of viral mutation/recombination and host-imposed selection pressure. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Overview of forest carnivore survey efforts in the Bitterroot Mountains

Treesearch

Kerry R. Foresman

2000-01-01

Disturbance of forested habitats through natural or man-made causes is thought to adversely affect medium-sized carnivores such as the American marten (Martes americana), fisher (Martes pennanti), wolverine (Gulo gulo), and lynx (Lynx lynx). In order to recognize these impacts it is necessary...

Bovine Tuberculosis (Mycobacterium bovis) in Wildlife in Spain

PubMed Central

Aranaz, Alicia; de Juan, Lucía; Montero, Natalia; Sánchez, Celia; Galka, Margarita; Delso, Consuelo; Álvarez, Julio; Romero, Beatriz; Bezos, Javier; Vela, Ana I.; Briones, Victor; Mateos, Ana; Domínguez, Lucas

2004-01-01

Mycobacterium bovis infection in wildlife and feral species is a potential source of infection for livestock and a threat to protected and endangered species. The aim of this study was to identify Spanish wild animal species infected with M. bovis through bacteriological culture and spacer oligonucleotide typing (spoligotyping) of isolates for epidemiological purposes. This study included samples from red deer (Cervus elaphus), fallow deer (Dama dama), wild boar (Sus scrofa), Iberian lynx (Lynx pardina), hare (Lepus europaeus), and cattle (Bos taurus). They were collected in several geographical areas that were selected for their unique ecological value and/or known relationships between wildlife and livestock. In the areas included in this survey, M. bovis strains with the same spoligotyping pattern were found infecting several wild species and livestock, which indicates an epidemiological link. A locally predominant spoligotype was found in these areas. Better understanding of the transmission and distribution of disease in these populations will permit more precise targeting of control measures. PMID:15184440

Comparison of proposed survey procedures for detection of forest carnivores

Treesearch

Kerry R. Foresman; Dean E. Pearson

1998-01-01

American marten (Martes americana), fisher (M. pennanti), wolverine (Gulo gulo), and lynx (Lynx lynx) are forest carnivores believed threatened by disturbance of late-successional forests. To manage forested ecosystems for these species, effective methods for their detection must be available. Recently, the U.S. Forest Service proposed standardized survey procedures...

Selective Predation of a Stalking Predator on Ungulate Prey

PubMed Central

Heurich, Marco; Zeis, Klara; Küchenhoff, Helmut; Müller, Jörg; Belotti, Elisa; Bufka, Luděk; Woelfing, Benno

2016-01-01

Prey selection is a key factor shaping animal populations and evolutionary dynamics. An optimal forager should target prey that offers the highest benefits in terms of energy content at the lowest costs. Predators are therefore expected to select for prey of optimal size. Stalking predators do not pursue their prey long, which may lead to a more random choice of prey individuals. Due to difficulties in assessing the composition of available prey populations, data on prey selection of stalking carnivores are still scarce. We show how the stalking predator Eurasian lynx (Lynx lynx) selects prey individuals based on species identity, age, sex and individual behaviour. To address the difficulties in assessing prey population structure, we confirm inferred selection patterns by using two independent data sets: (1) data of 387 documented kills of radio-collared lynx were compared to the prey population structure retrieved from systematic camera trapping using Manly’s standardized selection ratio alpha and (2) data on 120 radio-collared roe deer were analysed using a Cox proportional hazards model. Among the larger red deer prey, lynx selected against adult males—the largest and potentially most dangerous prey individuals. In roe deer lynx preyed selectively on males and did not select for a specific age class. Activity during high risk periods reduced the risk of falling victim to a lynx attack. Our results suggest that the stalking predator lynx actively selects for size, while prey behaviour induces selection by encounter and stalking success rates. PMID:27548478

Influence of forest structure on the abundance of snowshoe hares in western Wyoming

Treesearch

Nathan D. Berg; Eric M. Gese; John R. Squires; Lise M. Aubry

2012-01-01

Snowshoe hares (Lepus americanus) are a primary prey species for Canada lynx (Lynx canadensis) in western North America. Lynx management plans require knowledge of potential prey distribution and abundance in the western United States. Whether even-aged regenerating forests or multi-storied forests contain more snowshoe hares is currently unknown. During 2006-...

Disturbance ecology of North American boreal forests and associated northern mixed/subalpine forests [Chapter 3

Treesearch

James K. Agee

2000-01-01

Disturbance dynamics differ in the three subregions of the North American boreal forest (taiga, western United States, and eastern United States) where lynx are found, resulting in a range of potential effects on lynx populations. Fire severity tends to be high in most of the forest types where lynx habitat occurs, although subsequent succession will differ...

Selecting habitat to survive: the impact of road density on survival in a large carnivore.

PubMed

Basille, Mathieu; Van Moorter, Bram; Herfindal, Ivar; Martin, Jodie; Linnell, John D C; Odden, John; Andersen, Reidar; Gaillard, Jean-Michel

2013-01-01

Habitat selection studies generally assume that animals select habitat and food resources at multiple scales to maximise their fitness. However, animals sometimes prefer habitats of apparently low quality, especially when considering the costs associated with spatially heterogeneous human disturbance. We used spatial variation in human disturbance, and its consequences on lynx survival, a direct fitness component, to test the Hierarchical Habitat Selection hypothesis from a population of Eurasian lynx Lynx lynx in southern Norway. Data from 46 lynx monitored with telemetry indicated that a high proportion of forest strongly reduced the risk of mortality from legal hunting at the home range scale, while increasing road density strongly increased such risk at the finer scale within the home range. We found hierarchical effects of the impact of human disturbance, with a higher road density at a large scale reinforcing its negative impact at a fine scale. Conversely, we demonstrated that lynx shifted their habitat selection to avoid areas with the highest road densities within their home ranges, thus supporting a compensatory mechanism at fine scale enabling lynx to mitigate the impact of large-scale disturbance. Human impact, positively associated with high road accessibility, was thus a stronger driver of lynx space use at a finer scale, with home range characteristics nevertheless constraining habitat selection. Our study demonstrates the truly hierarchical nature of habitat selection, which aims at maximising fitness by selecting against limiting factors at multiple spatial scales, and indicates that scale-specific heterogeneity of the environment is driving individual spatial behaviour, by means of trade-offs across spatial scales.

Population and genetic outcomes 20 years after reintroducing bobcats (Lynx rufus) to Cumberland Island, Georgia USA

USGS Publications Warehouse

Diefenbach, Duane R.; Hansen, Leslie A.; Bohling, Justin H.; Miller-Butterworth, Cassandra

2015-01-01

In 1988–1989, 32 bobcats Lynx rufus were reintroduced to Cumberland Island (CUIS), Georgia, USA, from which they had previously been extirpated. They were monitored intensively for 3 years immediately post-reintroduction, but no estimation of the size or genetic diversity of the population had been conducted in over 20 years since reintroduction. We returned to CUIS in 2012 to estimate abundance and effective population size of the present-day population, as well as to quantify genetic diversity and inbreeding. We amplified 12 nuclear microsatellite loci from DNA isolated from scats to establish genetic profiles to identify individuals. We used spatially explicit capture–recapture population estimation to estimate abundance. From nine unique genetic profiles, we estimate a population size of 14.4 (SE = 3.052) bobcats, with an effective population size (Ne) of 5–8 breeding individuals. This is consistent with predictions of a population viability analysis conducted at the time of reintroduction, which estimated the population would average 12–13 bobcats after 10 years. We identified several pairs of related bobcats (parent-offspring and full siblings), but ~75% of the pairwise comparisons were typical of unrelated individuals, and only one individual appeared inbred. Despite the small population size and other indications that it has likely experienced a genetic bottleneck, levels of genetic diversity in the CUIS bobcat population remain high compared to other mammalian carnivores. The reintroduction of bobcats to CUIS provides an opportunity to study changes in genetic diversity in an insular population without risk to this common species. Opportunities for natural immigration to the island are limited; therefore, continued monitoring and supplemental bobcat reintroductions could be used to evaluate the effect of different management strategies to maintain genetic diversity and population viability. The successful reintroduction and maintenance of a

Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.

PubMed

D'Souza, Mark; Sulakhe, Dinanath; Wang, Sheng; Xie, Bing; Hashemifar, Somaye; Taylor, Andrew; Dubchak, Inna; Conrad Gilliam, T; Maltsev, Natalia

2017-01-01

Recent technological advances in genomics allow the production of biological data at unprecedented tera- and petabyte scales. Efficient mining of these vast and complex datasets for the needs of biomedical research critically depends on a seamless integration of the clinical, genomic, and experimental information with prior knowledge about genotype-phenotype relationships. Such experimental data accumulated in publicly available databases should be accessible to a variety of algorithms and analytical pipelines that drive computational analysis and data mining.We present an integrated computational platform Lynx (Sulakhe et al., Nucleic Acids Res 44:D882-D887, 2016) ( http://lynx.cri.uchicago.edu ), a web-based database and knowledge extraction engine. It provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization. It gives public access to the Lynx integrated knowledge base (LynxKB) and its analytical tools via user-friendly web services and interfaces. The Lynx service-oriented architecture supports annotation and analysis of high-throughput experimental data. Lynx tools assist the user in extracting meaningful knowledge from LynxKB and experimental data, and in the generation of weighted hypotheses regarding the genes and molecular mechanisms contributing to human phenotypes or conditions of interest. The goal of this integrated platform is to support the end-to-end analytical needs of various translational projects.

Mesopredator behavioral response to olfactory signals of an apex predator.

PubMed

Wikenros, Camilla; Jarnemo, Anders; Frisén, Marielle; Kuijper, Dries P J; Schmidt, Krzysztof

2017-01-01

Olfactory signals constitute an important mechanism in interspecific interactions, but little is known regarding their role in communication between predator species. We analyzed the behavioral responses of a mesopredator, the red fox ( Vulpes vulpes ), to an olfactory cue (scat) of an apex predator, the lynx ( Lynx lynx ) in Białowieża Primeval Forest, Poland, using video camera traps. Red fox visited sites with scats more often than expected and the duration of their visits was longer at scat sites than at control sites (no scat added). Vigilant behavior, sniffing and scent marking (including over-marking) occurred more often at scat sites compared to control sites, where foxes mainly passed by. Vigilance was most pronounced during the first days of the recordings. Red fox behavior was also influenced by foxes previously visiting scat sites. They sniffed and scent marked (multiple over-marking) more frequently when the lynx scat had been over-marked previously by red fox. Fox visits to lynx scats may be seen as a trade-off between obtaining information on a potential food source (prey killed by lynx) and the potential risk of predation by an apex predator.

Using PGFM (13,14-dihydro-15-keto-prostaglandin F2α) as a non-invasive pregnancy marker for felids.

PubMed

Dehnhard, M; Finkenwirth, C; Crosier, A; Penfold, L; Ringleb, J; Jewgenow, K

2012-04-01

Understanding the complex endocrine interactions that control reproduction in felids is essential for captive breeding management. The most important demand is a quick and reliable pregnancy diagnosis. However, the occurrence of pseudopregnancies in felids complicates matters. We investigated whether the fecal prostaglandin metabolite (PGFM) recently suggested for pregnancy diagnosis in the lynx is suitable for all felid species. We found that increased levels of PGFM during the last trimester indicate pregnancy in seven of the eight main lineages of the carnivore family Felidae. PGFM levels in a sand cat (domestic cat lineage) were basal at mating and remained so until Day 40 post-mating. Day 41 marked the beginning of a distinct increase culminating in peak levels of 6.5 μg/g before parturition and decreasing again to baseline thereafter. Similar pregnancy profiles were obtained from the domestic cat, the leopard cat, the lynx, the ocelot and the caracal lineage, whereas in pseudopregnant individuals (sand cat, Iberian and Eurasian lynx) fecal PGFM remained at basal levels. In pregnant cheetahs (puma lineage) PGFM increased above basal following day ∼48 peaking before pregnancy but remained at baseline in pseudopregnant females. Discrepancies existed in the Panthera lineage. While Chinese leopard, Sumatran tiger, and the black panther showed marked increases of PGFM during the last weeks of pregnancy, only moderate increases in PGFM levels were found in the Indochinese tiger and the Persian leopard. Altogether, PGFM as tool for pregnancy diagnosis has been proven to be useful in breeding management of felids. Copyright © 2012 Elsevier Inc. All rights reserved.

Description and life-cycle of Taenia lynciscapreoli sp. n. (Cestoda, Cyclophyllidea)

PubMed Central

Haukisalmi, Voitto; Konyaev, Sergey; Lavikainen, Antti; Isomursu, Marja; Nakao, Minoru

2016-01-01

Abstract A new species of tapeworm, Taenia lynciscapreoli sp. n. (Cestoda, Cyclophyllidea), is described from the Eurasian lynx (Lynx lynx), the main definitive host, and the roe deer (Capreolus capreolus and Capreolus pygargus), the main intermediate hosts, from Finland and Russia (Siberia and the Russian Far East). The new species was found once also in the wolf (Canis lupus) and the Eurasian elk/moose (Alces alces), representing accidental definitive and intermediate hosts, respectively. The conspecificity of adult specimens and metacestodes of Taenia lynciscapreoli sp. n. in various host species and regions, and their distinction from related species of Taenia, was confirmed by partial nucleotide sequences of the mitochondrial cytochrome c oxidase subunit 1 gene. Morphologically, Taenia lynciscapreoli sp. n. can be separated unambiguously from all other species of Taenia by the shape of its large rostellar hooks, particularly the characteristically short, wide and strongly curved blade. If the large rostellar hooks are missing, Taenia lynciscapreoli may be separated from related species by a combination of morphological features of mature proglottids. It is suggested that Taenia lynciscapreoli has been present in published materials concerning the tapeworms of Lynx lynx and Lynx pardinus in Europe, but has been misidentified as Taenia pisiformis (Bloch, 1780). Taenia lynciscapreoli sp. n. has not been found in lynx outside the range of roe deer, suggesting a transmission pathway based on a specific predator–prey relationship. The present study applies a novel, simple approach to compare qualitative interspecific differences in the shape of rostellar hooks. PMID:27199592

The changing contribution of top-down and bottom-up limitation of mesopredators during 220 years of land use and climate change.

PubMed

Pasanen-Mortensen, Marianne; Elmhagen, Bodil; Lindén, Harto; Bergström, Roger; Wallgren, Märtha; van der Velde, Ype; Cousins, Sara A O

2017-05-01

Apex predators may buffer bottom-up driven ecosystem change, as top-down suppression may dampen herbivore and mesopredator responses to increased resource availability. However, theory suggests that for this buffering capacity to be realized, the equilibrium abundance of apex predators must increase. This raises the question: will apex predators maintain herbivore/mesopredator limitation, if bottom-up change relaxes resource constraints? Here, we explore changes in mesopredator (red fox Vulpes vulpes) abundance over 220 years in response to eradication and recovery of an apex predator (Eurasian lynx Lynx lynx), and changes in land use and climate which are linked to resource availability. A three-step approach was used. First, recent data from Finland and Sweden were modelled to estimate linear effects of lynx density, land use and winter temperature on fox density. Second, lynx density, land use and winter temperature was estimated in a 22 650 km 2 focal area in boreal and boreo-nemoral Sweden in the years 1830, 1920, 2010 and 2050. Third, the models and estimates were used to project historic and future fox densities in the focal area. Projected fox density was lowest in 1830 when lynx density was high, winters cold and the proportion of cropland low. Fox density peaked in 1920 due to lynx eradication, a mesopredator release boosted by favourable bottom-up changes - milder winters and cropland expansion. By 2010, lynx recolonization had reduced fox density, but it remained higher than in 1830, partly due to the bottom-up changes. Comparing 1830 to 2010, the contribution of top-down limitation decreased, while environment enrichment relaxed bottom-up limitation. Future scenarios indicated that by 2050, lynx density would have to increase by 79% to compensate for a projected climate-driven increase in fox density. We highlight that although top-down limitation in theory can buffer bottom-up change, this requires compensatory changes in apex predator abundance

Critical-angle transmission grating technology development for high resolving power soft x-ray spectrometers on Arcus and Lynx

NASA Astrophysics Data System (ADS)

Heilmann, Ralf K.; Bruccoleri, Alexander R.; Song, Jungki; Kolodziejczak, Jeffery; Gaskin, Jessica A.; O'Dell, Stephen L.; Cheimetz, Peter; Hertz, Edward; Smith, Randall K.; Burwitz, Vadim; Hartner, Gisela; La Caria, Marlis-Madeleine; Schattenburg, Mark L.

2017-08-01

Soft x-ray spectroscopy with high resolving power (R = λ/Δλ) and large effective area (A) addresses numerous unanswered science questions about the physical laws that lead to the structure of our universe. In the soft x-ray band R > 1000 can currently only be achieved with diffraction grating-based spectroscopy. Criticalangle transmission (CAT) gratings combine the advantages of blazed reflection gratings (high efficiency, use of higher diffraction orders) with those of conventional transmission gratings (relaxed alignment tolerances and temperature requirements, transparent at higher energies, low mass), resulting in minimal mission resource requirements, while greatly improving figures of merit. Diffraction efficiency > 33% and R > 10, 000 have been demonstrated for CAT gratings. Last year the technology has been certified at Technology Readiness Level 4 based on a probe class mission concept. The Explorer-scale (A > 450 cm2 , R > 2500) grating spectroscopy Arcus mission can be built with today's CAT grating technology and has been selected in the current Explorer round for a Phase A concept study. Its figure of merit for the detection of weak absorption lines will be an order of magnitude larger than current instruments on Chandra and XMM-Newton. Further CAT grating technology development and improvements in the angular resolution of x-ray optics can provide another order of magnitude improvement in performance, as is envisioned for the X-ray Surveyor/Lynx mission concept currently under development for input into the 2020 Decadal Survey. For Arcus we have tested CAT gratings in a spectrometer setup in combination with silicon pore optics (SPO) and obtained resolving power results that exceed Arcus requirements before and after environmental testing of the gratings. We have recently fabricated the largest (32 mm x 32 mm) CAT gratings to date, and plan to increase grating size further. We mounted two of these large gratings to frames and aligned them in the

Top predators, mesopredators and their prey: interference ecosystems along bioclimatic productivity gradients.

PubMed

Elmhagen, B; Ludwig, G; Rushton, S P; Helle, P; Lindén, H

2010-07-01

1. The Mesopredator Release Hypothesis (MRH) suggests that top predator suppression of mesopredators is a key ecosystem function with cascading impacts on herbivore prey, but it remains to be shown that this top-down cascade impacts the large-scale structure of ecosystems. 2. The Exploitation Ecosystems Hypothesis (EEH) predicts that regional ecosystem structures are determined by top-down exploitation and bottom-up productivity. In contrast to MRH, EEH assumes that interference among predators has a negligible impact on the structure of ecosystems with three trophic levels. 3. We use the recolonization of a top predator in a three-level boreal ecosystem as a natural experiment to test if large-scale biomass distributions and population trends support MRH. Inspired by EEH, we also test if top-down interference and bottom-up productivity impact regional ecosystem structures. 4. We use data from the Finnish Wildlife Triangle Scheme which has monitored top predator (lynx, Lynx lynx), mesopredator (red fox, Vulpes vulpes) and prey (mountain hare, Lepus timidus) abundance for 17 years in a 200 000 km(2) study area which covers a distinct productivity gradient. 5. Fox biomass was lower than expected from productivity where lynx biomass was high, whilst hare biomass was lower than expected from productivity where fox biomass was high. Hence, where interference controlled fox abundance, lynx had an indirect positive impact on hare abundance as predicted by MRH. The rates of change indicated that lynx expansion gradually suppressed fox biomass. 6. Lynx status caused shifts between ecosystem structures. In the 'interference ecosystem', lynx and hare biomass increased with productivity whilst fox biomass did not. In the 'mesopredator release ecosystem', fox biomass increased with productivity but hare biomass did not. Thus, biomass controlled top-down did not respond to changes in productivity. This fulfils a critical prediction of EEH. 7. We conclude that the cascade

Antibody Detection and Molecular Characterization of Toxoplasma gondii from Bobcats (Lynx rufus), Domestic Cats (Felis catus), and Wildlife from Minnesota, USA.

PubMed

Verma, Shiv K; Minicucci, Larissa; Murphy, Darby; Carstensen, Michelle; Humpal, Carolin; Wolf, Paul; Calero-Bernal, Rafael; Cerqueira-Cézar, Camila K; Kwok, Oliver C H; Su, Chunlei; Hill, Dolores; Dubey, Jitender P

2016-09-01

Little is known of the epidemiology of toxoplasmosis in Minnesota. Here, we evaluated Toxoplasma gondii infection in 50 wild bobcats (Lynx rufus) and 75 other animals on/near 10 cattle farms. Antibodies to T. gondii were assayed in serum samples or tissue fluids by the modified agglutination test (MAT, cut-off 1:25). Twenty nine of 50 bobcats and 15 of 41 wildlife trapped on the vicinity of 10 farms and nine of 16 adult domestic cats (Felis catus) and six of 14 domestic dogs resident on farms were seropositive. Toxoplasma gondii oocysts were not found in feces of any felid. Tissues of all seropositive wild animals trapped on the farm were bioassayed in mice and viable T. gondii was isolated from two badgers (Taxidea taxus), two raccoons (Procyon lotor), one coyote (Canis latrans), and one opossum (Didelphis virginiana). All six T. gondii isolates were further propagated in cell culture. Multi-locus PCR-RFLP genotyping using 10 markers (SAG1, SAG2 (5'-3'SAG2, and alt.SAG2), SAG3, BTUB, GRA6, c22-8, c29-2, L358, PK1, and Apico), and DNA from cell culture derived tachyzoites revealed three genotypes; #5 ToxoDataBase (1 coyote, 1 raccoon), #1 (1 badger, 1 raccoon, 1 opossum), and #2 (1 badger). This is the first report of T. gondii prevalence in domestic cats and in bobcats from Minnesota, and the first isolation of viable T. gondii from badger. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

78 FR 59429 - Endangered and Threatened Wildlife and Plants; Revised Designation of Critical Habitat for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-26

...We, the U.S. Fish and Wildlife Service, propose to designate revised critical habitat for the contiguous U.S. distinct population segment (DPS) of the Canada lynx under the Endangered Species Act of 1973, as amended, and to revise the boundary of the Canada lynx DPS. These proposed revisions fulfill our obligations under two settlement agreements. The revised critical habitat proposed rule also addresses issues raised by two courts in 2010. If we finalize this rule as proposed, it would extend the Endangered Species Act's protections to the Canada lynx wherever it occurs in the contiguous United States, including New Mexico, and it would revise this species' critical habitat. The effect of this regulation is to conserve the Canada lynx and its habitats in the contiguous United States under the Endangered Species Act.

The Iberian Peninsula corridor or cul-de-sac? Mammalian faunal change and possible routes of dispersal in the last 2 million years

NASA Astrophysics Data System (ADS)

O'Regan, Hannah J.

2008-11-01

The Iberian Peninsula is almost surrounded by the sea and is topographically and ecologically variable. These factors will have impacted on both the distribution and dispersal patterns of large mammals (including hominins) within Iberia, and are considered in detail in this paper. There are two routes of mammalian dispersal into Iberia: across the Pyrenees and across the Gibraltar Strait. With an increasing interest in the possible use of coastlines by early hominins the latter route has been the focus of much discussion. However, the arguments are limited by the relative lack of hominin remains and archaeology from the Early Pleistocene. This paper takes a wider perspective to hominin dispersals by examining what is known of the evolution and movements of other taxa in Iberia and how these may inform our understanding of the hominin fossil record. Beginning by briefly reviewing the present day and Pleistocene glacial and interglacial vegetation of Iberia, it then considers the large-mammal fauna. Particular attention is paid to the potential routes of movement for terrestrial animals in and out of the peninsula, and the evidence for each route is assessed. Iberia was a refuge for temperate species during the Quaternary glacial cycles and movements of Quaternary faunas are reviewed in the light of modern phylogeographic analyses and studies of fossil assemblages. Iberian faunas are highly variable, with some absences of otherwise widespread European animals, but cold-phase taxa such as reindeer and woolly rhinoceros did cross the Pyrenees. It seems that the large mountain ranges were less a barrier for the dispersal of these taxa than the line which today forms the limit of the summer drought. Iberia also provided the last refuge for extinct species such as the Neanderthals and endangered extant species such as the Iberian lynx.

Landscape permeability for large carnivores in Washington: a geographic information system weighted-distance and least-cost corridor assessment.

Treesearch

Peter H. Singleton; William L. Gaines; John F. Lehmkuhl

2002-01-01

We conducted a regional-scale evaluation of landscape permeability for large carnivores in Washington and adjacent portions of British Columbia and Idaho. We developed geographic information system based landscape permeability models for wolves (Canis lupus), wolverine (Gulo gulo), lynx (Lynx canadensis),...

Use of non-invasive genetics to generate core-area population estimates of a threatened predator in the Superior National Forest, USA

USGS Publications Warehouse

Barber-Meyer, Shannon; Ryan, Daniel; Grosshuesch, David; Catton, Timothy; Malick-Wahls, Sarah

2018-01-01

core areas and averaged 52.3 (SD=8.3, range=43-59) during 2015-2017 in the larger core areas. We found no evidence for a decrease or increase in abundance during either period. Lynx density estimates were approximately 7-10 times lower than densities of lynx in northern populations at the low of the snowshoe hare (Lepus americanus) population cycle. To our knowledge, our results are the first attempt to estimate abundance, trend and density of lynx in Minnesota using non-invasive genetic capture-mark-recapture. Estimates such as ours provide useful benchmarks for future comparisons by providing a context with which to assess 1) potential changes in forest management that may affect lynx recovery and conservation, and 2) possible effects of climate change on the depth, density, and duration of annual snow cover and correspondingly, potential effects on snowshoe hares as well.

Life Tracks Series.

ERIC Educational Resources Information Center

Brynildson, Inga

Presented are descriptions of and information about various endangered species in Wisconsin. They include: the timber wolf (Canis lupus lycaon); Forester's tern (Sterna forsteri); the Canada lynx (Lynx canadensis); Higgins' eye pearly mussel (Lampsilis higginsii); the piping plover (Charadrius melodus); the osprey (Pandion haliaetus); the…

Hunting-mediated predator facilitation and superadditive mortality in a European ungulate.

PubMed

Gehr, Benedikt; Hofer, Elizabeth J; Pewsner, Mirjam; Ryser, Andreas; Vimercati, Eric; Vogt, Kristina; Keller, Lukas F

2018-01-01

Predator-prey theory predicts that in the presence of multiple types of predators using a common prey, predator facilitation may result as a consequence of contrasting prey defense mechanisms, where reducing the risk from one predator increases the risk from the other. While predator facilitation is well established in natural predator-prey systems, little attention has been paid to situations where human hunters compete with natural predators for the same prey. Here, we investigate hunting-mediated predator facilitation in a hunter-predator-prey system. We found that hunter avoidance by roe deer ( Capreolus capreolus ) exposed them to increase predation risk by Eurasian lynx ( Lynx lynx ). Lynx responded by increasing their activity and predation on deer, providing evidence that superadditive hunting mortality may be occurring through predator facilitation. Our results reveal a new pathway through which human hunters, in their role as top predators, may affect species interactions at lower trophic levels and thus drive ecosystem processes.

Isolation and Genetic Characterization of Toxoplasma gondii from Black Bears (Ursus americanus), Bobcats (Lynx rufus), and Feral Cats (Felis catus) from Pennsylvania.

PubMed

Dubey, Jitender P; Verma, Shiv K; Calero-Bernal, Rafael; Cassinelli, Ana B; Kwok, Oliver C H; Van Why, Kyle; Su, Chunlei; Humphreys, Jan G

2015-01-01

Toxoplasma gondii infects virtually all warm-blooded hosts worldwide. Recently, attention has been focused on the genetic diversity of the parasite to explain its pathogenicity in different hosts. It has been hypothesized that interaction between feral and domestic cycles of T. gondii may increase unusual genotypes in domestic cats and facilitate transmission of potentially more pathogenic genotypes to humans, domestic animals, and wildlife. In the present study, we tested black bear (Ursus americanus), bobcat (Lynx rufus), and feral cat (Felis catus) from the state of Pennsylvania for T. gondii infection. Antibodies to T. gondii were found in 32 (84.2%) of 38 bears, both bobcats, and 2 of 3 feral cats tested by the modified agglutination test (cut off titer 1:25). Hearts from seropositive animals were bioassayed in mice, and viable T. gondii was isolated from 3 of 32 bears, 2 of 2 bobcats, and 2 of 3 feral cats. DNA isolated from culture-derived tachyzoites of these isolates was characterized using multilocus PCR-RFLP markers. Three genotypes were revealed, including ToxoDB PCR-RFLP genotype #1 or #3 (Type II, 1 isolate), #5 (Type 12, 3 isolates), and #216 (3 isolates), adding to the evidence of genetic diversity of T. gondii in wildlife in Pennsylvania. Pathogenicity of 3 T. gondii isolates (all #216, 1 from bear, and 2 from feral cat) was determined in outbred Swiss Webster mice; all three were virulent causing 100% mortality. Results indicated that highly mouse pathogenic strains of T. gondii are circulating in wildlife, and these strains may pose risk to infect human through consuming of game meat. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

The Influence of Snowmobile Trails on Coyote Movements during Winter in High-Elevation Landscapes

PubMed Central

Gese, Eric M.; Dowd, Jennifer L. B.; Aubry, Lise M.

2013-01-01

Competition between sympatric carnivores has long been of interest to ecologists. Increased understanding of these interactions can be useful for conservation planning. Increased snowmobile traffic on public lands and in habitats used by Canada lynx (Lynx canadensis) remains controversial due to the concern of coyote (Canis latrans) use of snowmobile trails and potential competition with lynx. Determining the variables influencing coyote use of snowmobile trails has been a priority for managers attempting to conserve lynx and their critical habitat. During 2 winters in northwest Wyoming, we backtracked coyotes for 265 km to determine how varying snow characteristics influenced coyote movements; 278 km of random backtracking was conducted simultaneously for comparison. Despite deep snow (>1 m deep), radio-collared coyotes persisted at high elevations (>2,500 m) year-round. All coyotes used snowmobile trails for some portion of their travel. Coyotes used snowmobile trails for 35% of their travel distance (random: 13%) for a mean distance of 149 m (random: 59 m). Coyote use of snowmobile trails increased as snow depth and penetrability off trails increased. Essentially, snow characteristics were most influential on how much time coyotes spent on snowmobile trails. In the early months of winter, snow depth was low, yet the snow column remained dry and the coyotes traveled off trails. As winter progressed and snow depth increased and snow penetrability increased, coyotes spent more travel distance on snowmobile trails. As spring approached, the snow depth remained high but penetrability decreased, hence coyotes traveled less on snowmobile trails because the snow column off trail was more supportive. Additionally, coyotes traveled closer to snowmobile trails than randomly expected and selected shallower snow when traveling off trails. Coyotes also preferred using snowmobile trails to access ungulate kills. Snow compaction from winter recreation influenced coyote

The influence of snowmobile trails on coyote movements during winter in high-elevation landscapes.

PubMed

Gese, Eric M; Dowd, Jennifer L B; Aubry, Lise M

2013-01-01

Competition between sympatric carnivores has long been of interest to ecologists. Increased understanding of these interactions can be useful for conservation planning. Increased snowmobile traffic on public lands and in habitats used by Canada lynx (Lynx canadensis) remains controversial due to the concern of coyote (Canis latrans) use of snowmobile trails and potential competition with lynx. Determining the variables influencing coyote use of snowmobile trails has been a priority for managers attempting to conserve lynx and their critical habitat. During 2 winters in northwest Wyoming, we backtracked coyotes for 265 km to determine how varying snow characteristics influenced coyote movements; 278 km of random backtracking was conducted simultaneously for comparison. Despite deep snow (>1 m deep), radio-collared coyotes persisted at high elevations (>2,500 m) year-round. All coyotes used snowmobile trails for some portion of their travel. Coyotes used snowmobile trails for 35% of their travel distance (random: 13%) for a mean distance of 149 m (random: 59 m). Coyote use of snowmobile trails increased as snow depth and penetrability off trails increased. Essentially, snow characteristics were most influential on how much time coyotes spent on snowmobile trails. In the early months of winter, snow depth was low, yet the snow column remained dry and the coyotes traveled off trails. As winter progressed and snow depth increased and snow penetrability increased, coyotes spent more travel distance on snowmobile trails. As spring approached, the snow depth remained high but penetrability decreased, hence coyotes traveled less on snowmobile trails because the snow column off trail was more supportive. Additionally, coyotes traveled closer to snowmobile trails than randomly expected and selected shallower snow when traveling off trails. Coyotes also preferred using snowmobile trails to access ungulate kills. Snow compaction from winter recreation influenced coyote

In situ analysis of carbon isotopes in North American diamonds

NASA Astrophysics Data System (ADS)

van Rythoven, A. D.; Hauri, E. H.; Wang, J.; McCandless, T.; Shirey, S. B.; Schulze, D. J.

2010-12-01

Diamonds from three North American kimberlite occurrences were investigated with cathodoluminescence (CL) and secondary ion mass spectrometry (SIMS) to determine their growth history and carbon isotope composition. Diamonds analyzed include fourteen from Lynx (Quebec), twelve from Kelsey Lake (Colorado) and eleven from A154 South (Diavik mine, Northwest Territories). Growth histories for the diamonds vary from simple to highly complex based on their CL images and depending on the individual stone. Deformation laminae are evident in CL images of the Lynx diamonds that typically are brownish in color. Two to five points per diamond were analyzed by SIMS for carbon isotope composition. Sample heterogeneity is minimal in terms of δ13C (vs. PDB) values. Points within single diamond had a maximum range of approximately 1 ‰. The results for the A154 South (-6.4 to -3 ‰) and Kelsey Lake (-11.2 to -2.6 ‰) stones were in accordance with earlier reported values. The Lynx kimberlite stones have anomalously high ratios and range from -3.5 to +0.2 ‰ (average: -1.4 ‰). No previous carbon isotope analyses on diamonds from Lynx or any other eastern Superior craton occurrence have been published. The diamonds possess carbon isotope ratios higher than those for the only other reported analyses of Superior craton diamonds at Wawa, Ontario (-5.5 to -1.1 ‰). In global terms, the only published analyses of diamonds that consistently contain even higher values are those from New South Wales (Australia). However, these diamonds are alluvial and contain eclogitic and/or exotic mineral inclusions. The Lynx diamonds are entirely peridotitic and from a primary deposit. The unusually low (i.e. >-5‰) δ13C values of the Lynx (and Wawa) diamonds may indicate a different carbon reservoir for the Superior craton mantle as compared to other cratons.

In situ Analysis of North American Diamond: Implications for Diamond Growth Modeling

NASA Astrophysics Data System (ADS)

Schulze, D. J.; Van Rythoven, A. D.; Hauri, E.; Wang, J.

2014-12-01

Diamond crystals from three North American kimberlite occurrences were investigated with cathodoluminescence (CL) and secondary ion mass spectrometry (SIMS) to determine their growth history, carbon isotope composition and nitrogen content. Samples analyzed include sixteen from Lynx (Quebec), twelve from Kelsey Lake (Colorado) and eighteen from A154 South (Diavik mine, Northwest Territories). Growth histories for the samples vary from simple to highly complex based on their CL images and depending on the individual stone. Deformation lamellae are evident in CL images of the Lynx crystals which typically are brownish in color. Two to five points per diamond were analyzed by SIMS for carbon isotope composition (δ13CPDB) and three to seven points for nitrogen content. The results for the A154 South (δ13CPDB = -6.76 to -1.68 ‰) and Kelsey Lake (δ13CPDB = -11.81 to -2.43 ‰) stones (mixed peridotitic and eclogitic suites) are similar to earlier reported values. The Lynx kimberlite stones have anomalously high carbon isotope ratios and range from -3.58 to +1.74 ‰. The Lynx diamond suite is almost entirely peridotitic. The unusually high (i.e. >-5‰) δ13C values of the Lynx diamonds, as well as those from Wawa, Ontario and Renard, Quebec, may indicate an anomalous carbon reservoir for the Superior cratonic mantle relative to other cratons. In addition to the heavier carbon isotope values, the Lynx samples have very low nitrogen contents (<100 ppm). Nitrogen contents for Kelsey Lake and Diavik samples are more typical and range to ~1100 ppm. Comparison of observed core to rim variations in nitrogen content and carbon isotopes with modeled Rayleigh fractionation trends for published diamond growth mechanisms allows for evaluation of carbon speciation and other parent fluid conditions. Observed trends that closely follow modeled data are rare, but appear to suggest diamond growth from carbonate-bearing fluids at Lynx and Diavik, and growth from a methane

Landscape location affects genetic variation of Canada lynx (Lynx canadensis)

Treesearch

M. K. Schwartz; L. S. Mills; Y. Ortega; L. F. Ruggiero; F. W. Allendorf

2003-01-01

The effect of a population's location on the landscape on genetic variation has been of interest to population genetics for more than half a century. However, most studies do not consider broadscale biogeography when interpreting genetic data. In this study, we propose an operational definition of a peripheral population, and then explore whether peripheral...

Recovery of large carnivores in Europe's modern human-dominated landscapes.

PubMed

Chapron, Guillaume; Kaczensky, Petra; Linnell, John D C; von Arx, Manuela; Huber, Djuro; Andrén, Henrik; López-Bao, José Vicente; Adamec, Michal; Álvares, Francisco; Anders, Ole; Balčiauskas, Linas; Balys, Vaidas; Bedő, Péter; Bego, Ferdinand; Blanco, Juan Carlos; Breitenmoser, Urs; Brøseth, Henrik; Bufka, Luděk; Bunikyte, Raimonda; Ciucci, Paolo; Dutsov, Alexander; Engleder, Thomas; Fuxjäger, Christian; Groff, Claudio; Holmala, Katja; Hoxha, Bledi; Iliopoulos, Yorgos; Ionescu, Ovidiu; Jeremić, Jasna; Jerina, Klemen; Kluth, Gesa; Knauer, Felix; Kojola, Ilpo; Kos, Ivan; Krofel, Miha; Kubala, Jakub; Kunovac, Saša; Kusak, Josip; Kutal, Miroslav; Liberg, Olof; Majić, Aleksandra; Männil, Peep; Manz, Ralph; Marboutin, Eric; Marucco, Francesca; Melovski, Dime; Mersini, Kujtim; Mertzanis, Yorgos; Mysłajek, Robert W; Nowak, Sabina; Odden, John; Ozolins, Janis; Palomero, Guillermo; Paunović, Milan; Persson, Jens; Potočnik, Hubert; Quenette, Pierre-Yves; Rauer, Georg; Reinhardt, Ilka; Rigg, Robin; Ryser, Andreas; Salvatori, Valeria; Skrbinšek, Tomaž; Stojanov, Aleksandar; Swenson, Jon E; Szemethy, László; Trajçe, Aleksandër; Tsingarska-Sedefcheva, Elena; Váňa, Martin; Veeroja, Rauno; Wabakken, Petter; Wölfl, Manfred; Wölfl, Sybille; Zimmermann, Fridolin; Zlatanova, Diana; Boitani, Luigi

2014-12-19

The conservation of large carnivores is a formidable challenge for biodiversity conservation. Using a data set on the past and current status of brown bears (Ursus arctos), Eurasian lynx (Lynx lynx), gray wolves (Canis lupus), and wolverines (Gulo gulo) in European countries, we show that roughly one-third of mainland Europe hosts at least one large carnivore species, with stable or increasing abundance in most cases in 21st-century records. The reasons for this overall conservation success include protective legislation, supportive public opinion, and a variety of practices making coexistence between large carnivores and people possible. The European situation reveals that large carnivores and people can share the same landscape. Copyright © 2014, American Association for the Advancement of Science.

Potential Effects of Winter Navigation on Movements of Large Land Mammals in Eastern Lake Superior and Saint Mary’s River Area. Great Lakes-Saint Lawrence Seaway Navigation Season Extension Program

DTIC Science & Technology

1980-09-01

considered effects on deer, seasonal migrations, daily movements and direct mortality; the dispersal of wolves , bobcats, lynx, moose, coyotes and red foxes...literature and information search pertaining to movements and dispersal of wolves , coyotes, foxes, bobcats, lynx, deer, and moose, and local records of the...islands in Whitefish Bay tracks of foxes, deer and wolf were identified. The partially obliterated tracks of a pack of five wolves were observed near

Suborbital Reusable Launch Vehicles as an Opportunity to Consolidate and Calibrate Ground Based and Satellite Instruments

NASA Astrophysics Data System (ADS)

Papadopoulos, K.

2014-12-01

XCOR Aerospace, a commercial space company, is planning to provide frequent, low cost access to near-Earth space on the Lynx suborbital Reusable Launch Vehicle (sRLV). Measurements in the external vacuum environment can be made and can launch from most runways on a limited lead time. Lynx can operate as a platform to perform suborbital in situ measurements and remote sensing to supplement models and simulations with new data points. These measurements can serve as a quantitative link to existing instruments and be used as a basis to calibrate detectors on spacecraft. Easier access to suborbital data can improve the longevity and cohesiveness of spacecraft and ground-based resources. A study of how these measurements can be made on Lynx sRLV will be presented. At the boundary between terrestrial and space weather, measurements from instruments on Lynx can help develop algorithms to optimize the consolidation of ground and satellite based data as well as assimilate global models with new data points. For example, current tides and the equatorial electrojet, essential to understanding the Thermosphere-Ionosphere system, can be measured in situ frequently and on short notice. Furthermore, a negative-ion spectrometer and a Faraday cup, can take measurements of the D-region ion composition. A differential GPS receiver can infer the spatial gradient of ionospheric electron density. Instruments and optics on spacecraft degrade over time, leading to calibration drift. Lynx can be a cost effective platform for deploying a reference instrument to calibrate satellites with a frequent and fast turnaround and a successful return of the instrument. A calibrated reference instrument on Lynx can make collocated observations as another instrument and corrections are made for the latter, thus ensuring data consistency and mission longevity. Aboard a sRLV, atmospheric conditions that distort remotely sensed data (ground and spacecraft based) can be measured in situ. Moreover, an

LYNX: A Linked Eulerian and Lagrangian Code. Volume II. LYNX Computer Listing

DTIC Science & Technology

1975-11-01

177« 178« 179» ISO* 18|» 182« 183» IBM * 185* 1B6« 187» 198« 189« 190« |f|i 192» 193« 194» 195» 196« 197» 198» 199* 200» 201...XPLC ID) ,Y(JD) ,TAUI ID) ,YB(IJD) .FBI IJD) ,T 1 3B ( ID ) • XCT I IJD) »VOBUjD» ,ZZ(NN0IM) ,VV(NND1M) »OBFUL •BETA tAP •OTCP iTP ...CELL CONTAINING PARTICLE NO I. •OB IOUFUL •BETA »AP •UTCP iTP •COMPEN ,SHEN •YP1 »YP2 •KMAX ,KBAR • 1JMA< ,IK»UX

Responses of beaver (Castor canadensis Kuhl) to predator chemicals.

PubMed

Engelhart, A; Müller-Schwarze, D

1995-09-01

Free-ranging beaver (Castor canadensis) in two different beaver populations in New York State were exposed to predator chemicals to test feeding inhibition. Solvent extracts of feces were applied to stem sections of aspen, the preferred food tree of beavers, permitting smelling and tasting the samples. Predator odors were from wolf (Canis lupus), coyote (Canis latrans), dog (Canis familiaris), black bear (Ursus americanus), river otter (Lutra canadensis), lynx (Lynx canadensis), and African lion (Panthera leo). The experiment was repeated. The predator odors reduced feeding compared to untreated or solvent-treated controls. One population consumed 17.0% of the samples with predator odor and 27.0% of the controls in summer, and 48.4% and 60.0%, respectively, in autumn. The other population accepted 3.15% of the predator odor samples and 11.05% of the controls in summer. Coyote, lynx, and river otter odors had the strongest effects. Diesel oil and bitter-tasting neem extract had weaker effects. Predator odors are promising as feeding repellents for beaver.

Can only poorer European countries afford large carnivores?

PubMed

Kojola, Ilpo; Hallikainen, Ville; Helle, Timo; Swenson, Jon E

2018-01-01

One of the classic approaches in environmental economics is the environmental Kuznets curve, which predicts that when a national economy grows from low to medium levels, threats to biodiversity conservation increase, but they decrease when the economy moves from medium to high. We evaluated this approach by examining how population densities of the brown bear (Ursus arctos), gray wolf (Canis lupus), and Eurasian lynx (Lynx lynx) were related to the national economy in 24 European countries. We used forest proportions, the existence of a compensation system, and country group (former socialist countries, Nordic countries, other countries) as covariates in a linear model with the first- and the second-order polynomial terms of per capita gross domestic product (GDP). Country group was treated as a random factor, but remained insignificant and was ignored. All models concerning brown bear and wolf provided evidence that population densities decreased with increasing GDP, but densities of lynx were virtually independent of GDP. Models for the wolf explained >80% of the variation in densities, without a difference between the models with all independent variables and the model with only GDP. For the bear, the model with GDP alone accounted for 10%, and all three variables 33%, of the variation in densities. Wolves exhibit a higher capacity for dispersal and reproduction than bear or lynx, but still exists at the lowest densities in wealthy European countries. We are aware that several other factors, not available for our models, influenced large carnivore densities. Based on the pronounced differences among large carnivore species in their countrywide relationships between densities and GDP, and a strikingly high relationship for the gray wolf, we suggest that our results reflected differences in political history and public acceptance of these species among countries. The compensation paid for the damages caused by the carnivores is not a key to higher carnivore

Mega starbirth cluster is biggest, brightest and hottest ever seen

NASA Astrophysics Data System (ADS)

2003-10-01

Artist’s impression of the Lynx Arc hi-res Size hi-res: 4519 kb Credits: European Space Agency, NASA and Robert A.E. Fosbury (European Space Agency/Space Telescope-European Coordinating Facility, Germany) Artist’s impression of the Lynx Arc This illustration shows an artist’s impression of the so-called Lynx arc, a newly identified distant super-cluster that contains a million blue-white stars twice as hot as similar stars in our Milky Way galaxy. The Lynx arc is one million times brighter than the well-known Orion Nebula, a nearby prototypical ‘starbirth’ region visible with small telescopes. The stars in the Lynx arc are more than twice as hot as the Orion Nebula’s central stars, with surface temperatures up to 80 000°C. Though there are much bigger and brighter star-forming regions than the Orion Nebula in our local Universe, none are as bright as the Lynx arc, nor do they contain such large numbers of hot stars. The stars are so hot that a very large fraction of their light is emitted in the ultraviolet that makes the gas glow with the green and red colours illustrated here. The so-called Lynx Arc is one million times brighter than the well-known Orion Nebula, a nearby prototypical 'starbirth' region visible with small telescopes. The newly identified super-cluster contains a million blue-white stars that are twice as hot as similar stars in our Milky Way galaxy. It is a rarely glimpsed example of the early days of the Universe where furious firestorms of starbirth blazed across the skies. The spectacular cluster's opulence is dimmed when seen from Earth only by the fact that it is 12 000 million light years away. The discovery of this unique and tantalising object was the result of a systematic study of distant clusters of galaxies carried out with major X-ray, optical and infrared telescopes, including the NASA/ESA Hubble Space Telescope, ROSAT and the Keck Telescopes. Bob Fosbury, of the European Space Agency's Space Telescope

Trans-Boundary Edge Effects in the Western Carpathians: The Influence of Hunting on Large Carnivore Occupancy.

PubMed

Kutal, Miroslav; Váňa, Martin; Suchomel, Josef; Chapron, Guillaume; López-Bao, José Vicente

2016-01-01

The conservation and management of wolves Canis lupus in the periphery of their distribution is challenging. Edges of wolf distribution are characterized by very few and intermittent occurrences of individuals, which are modulated by multiple factors affecting the overall population such as human-caused mortality, management targets and food availability. The knowledge of population dynamics in the edges becomes crucial when hunting takes place nearby the edges, which may preclude population expansion. Here, using as example the occurrence of wolves in the Beskydy Mountains (Czech-Slovak border), which are the edge distribution of the wolf and Eurasian lynx Lynx lynx populations in the West Carpathians, we explored how food availability and hunting in the Slovakian core area affected the dynamics of wolves in the edges of this population. During 2003-2012, we monitored large carnivore occurrence by snow-tracking surveys and tested potential differences in the occurrence of these species in Beskydy Mountains and potential mechanisms behind detected patterns. Despite the proximity to the core area, with several wolf reproductions being confirmed at least in recent years, the wolf was a very rare species in Beskydy and was recorded 14 times less often than the lynx. The expected abundance of wolves in the Beskydy Mountains was inversely related to prey availability in the Slovakian core area. Wolf hunting the year before influenced the expected abundance of wolves in Beskydy area. We discuss how different life histories and legal status of both species probably account for most of the observed difference of occurrence at range margins.

Trans-Boundary Edge Effects in the Western Carpathians: The Influence of Hunting on Large Carnivore Occupancy

PubMed Central

Váňa, Martin; Suchomel, Josef; Chapron, Guillaume; López-Bao, José Vicente

2016-01-01

The conservation and management of wolves Canis lupus in the periphery of their distribution is challenging. Edges of wolf distribution are characterized by very few and intermittent occurrences of individuals, which are modulated by multiple factors affecting the overall population such as human-caused mortality, management targets and food availability. The knowledge of population dynamics in the edges becomes crucial when hunting takes place nearby the edges, which may preclude population expansion. Here, using as example the occurrence of wolves in the Beskydy Mountains (Czech-Slovak border), which are the edge distribution of the wolf and Eurasian lynx Lynx lynx populations in the West Carpathians, we explored how food availability and hunting in the Slovakian core area affected the dynamics of wolves in the edges of this population. During 2003–2012, we monitored large carnivore occurrence by snow-tracking surveys and tested potential differences in the occurrence of these species in Beskydy Mountains and potential mechanisms behind detected patterns. Despite the proximity to the core area, with several wolf reproductions being confirmed at least in recent years, the wolf was a very rare species in Beskydy and was recorded 14 times less often than the lynx. The expected abundance of wolves in the Beskydy Mountains was inversely related to prey availability in the Slovakian core area. Wolf hunting the year before influenced the expected abundance of wolves in Beskydy area. We discuss how different life histories and legal status of both species probably account for most of the observed difference of occurrence at range margins. PMID:28002475

Interference in the tundra predator guild studied using local ecological knowledge.

PubMed

Ehrich, Dorothee; Strømeng, Marita A; Killengreen, Siw T

2016-04-01

The decline or recolonization of apex predators such as wolves and lynx, often driven by management decisions, and the expansion of smaller generalist predators such as red foxes, can have important ecosystem impacts. The mesopredator release hypothesis proposes that apex predators control medium-sized predator populations through competition and/or intraguild predation. The decline of apex predators thus leads to an increase in mesopredators, possibly with a negative impact on prey populations. Information about the abundance of mammalian tundra predators, wolf (Canis lupus), wolverine (Gulo gulo), lynx (Lynx lynx), red fox (Vulpes vulpes) and arctic fox (Vulpes lagopus) was collected from local active outdoors people during semi-structured interviews in 14 low arctic or sub-arctic settlements in western Eurasia. The perceived abundance of red fox decreased with higher wolf abundance and in more arctic areas, but the negative effect of wolves decreased in more arctic and therefore less productive ecosystems. The perceived abundance of arctic fox increased towards the arctic and in areas with colder winters. Although there was a negative correlation between the two fox species, red fox was not included in the model for perceived arctic fox abundance, which received most support. Our results support the mesopredator release hypothesis regarding the expansion of red foxes in subarctic areas and indicate that top-down control by apex predators is weaker in less productive and more arctic ecosystems. We showed that local ecological knowledge is a valuable source of information about large-scale processes, which are difficult to study through direct biological investigations.

Gastric spiral bacteria in small felids.

PubMed

Kinsel, M J; Kovarik, P; Murnane, R D

1998-06-01

Nine small cats, including one bobcat (Felis rufus), one Pallas cat (F. manul), one Canada lynx (F. lynx canadensis), two fishing cats (F. viverrina), two margays (F. wiedii), and two sand cats (F. margarita), necropsied between June 1995 and March 1997 had large numbers of gastric spiral bacteria, whereas five large cats, including one African lion (Panthera leo), two snow leopards (P. uncia), one Siberian tiger (P. tigris altaica), and one jaguar (P. onca), necropsied during the same period had none. All of the spiral organisms from the nine small cats were histologically and ultrastructurally similar. Histologically, the spiral bacteria were 5-14 microm long with five to nine coils per organism and were located both extracellularly within gastric glands and surface mucus, and intracellularly in parietal cells. Spiral bacteria in gastric mucosal scrapings from the Canada lynx, one fishing cat, and the two sand cats were gram negative and had corkscrewlike to tumbling motility when viewed with phase contrast microscopy. The bacteria were 0.5-0.7 microm wide, with a periodicity of 0.65-1.1 microm in all cats. Bipolar sheathed flagella were occasionally observed, and no periplasmic fibrils were seen. The bacteria were extracellular in parietal cell canaliculi and intracellular within parietal cells. Culture of mucosal scrapings from the Canada lynx and sand cats was unsuccessful. Based on morphology, motility, and cellular tropism, the bacteria were probably Helicobacter-like organisms. Although the two margays had moderate lymphoplasmacytic gastritis, the other cats lacked or had only mild gastric lymphoid infiltrates, suggesting that these organisms are either commensals or opportunistic pathogens.

Mechanisms of Inhibition and Potentiation of α4β2 Nicotinic Acetylcholine Receptors by Members of the Ly6 Protein Family*

PubMed Central

Wu, Meilin; Puddifoot, Clare A.; Taylor, Palmer; Joiner, William J.

2015-01-01

α4β2 nicotinic acetylcholine receptors (nAChRs) are abundantly expressed throughout the central nervous system and are thought to be the primary target of nicotine, the main addictive substance in cigarette smoking. Understanding the mechanisms by which these receptors are regulated may assist in developing compounds to selectively interfere with nicotine addiction. Here we report previously unrecognized modulatory properties of members of the Ly6 protein family on α4β2 nAChRs. Using a FRET-based Ca2+ flux assay, we found that the maximum response of α4β2 receptors to agonist was strongly inhibited by Ly6h and Lynx2 but potentiated by Ly6g6e. The mechanisms underlying these opposing effects appear to be fundamentally distinct. Receptor inhibition by Lynx2 was accompanied by suppression of α4β2 expression at the cell surface, even when assays were preceded by chronic exposure of cells to an established chaperone, nicotine. Receptor inhibition by Lynx2 also was resistant to pretreatment with extracellular phospholipase C, which cleaves lipid moieties like those that attach Ly6 proteins to the plasma membrane. In contrast, potentiation of α4β2 activity by Ly6g6e was readily reversible by pretreatment with phospholipase C. Potentiation was also accompanied by slowing of receptor desensitization and an increase in peak currents. Collectively our data support roles for Lynx2 and Ly6g6e in intracellular trafficking and allosteric potentiation of α4β2 nAChRs, respectively. PMID:26276394

An update on X-ray reflection gratings developed for future missions

NASA Astrophysics Data System (ADS)

Miles, Drew

2018-01-01

X-ray reflection gratings are a key technology being studied for future X-ray spectroscopy missions, including the Lynx X-ray mission under consideration for the 2020 Decadal Survey. We present an update on the status of X-ray reflection gratings being developed at Penn State University, including current fabrication techniques and mass-replication processes and the latest diffraction efficiency results and resolving power measurements. Individual off-plane X-ray reflection gratings have exceeded the current Lynx requirements for both effective area and resolving power. Finally, we discuss internal projects that will advance the technology readiness level of these gratings.

Mechanisms of inhibition and potentiation of α4β2 nicotinic acetylcholine receptors by members of the Ly6 protein family.

PubMed

Wu, Meilin; Puddifoot, Clare A; Taylor, Palmer; Joiner, William J

2015-10-02

α4β2 nicotinic acetylcholine receptors (nAChRs) are abundantly expressed throughout the central nervous system and are thought to be the primary target of nicotine, the main addictive substance in cigarette smoking. Understanding the mechanisms by which these receptors are regulated may assist in developing compounds to selectively interfere with nicotine addiction. Here we report previously unrecognized modulatory properties of members of the Ly6 protein family on α4β2 nAChRs. Using a FRET-based Ca(2+) flux assay, we found that the maximum response of α4β2 receptors to agonist was strongly inhibited by Ly6h and Lynx2 but potentiated by Ly6g6e. The mechanisms underlying these opposing effects appear to be fundamentally distinct. Receptor inhibition by Lynx2 was accompanied by suppression of α4β2 expression at the cell surface, even when assays were preceded by chronic exposure of cells to an established chaperone, nicotine. Receptor inhibition by Lynx2 also was resistant to pretreatment with extracellular phospholipase C, which cleaves lipid moieties like those that attach Ly6 proteins to the plasma membrane. In contrast, potentiation of α4β2 activity by Ly6g6e was readily reversible by pretreatment with phospholipase C. Potentiation was also accompanied by slowing of receptor desensitization and an increase in peak currents. Collectively our data support roles for Lynx2 and Ly6g6e in intracellular trafficking and allosteric potentiation of α4β2 nAChRs, respectively. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Improving the assessment of predator functional responses by considering alternate prey and predator interactions.

PubMed

Chan, K; Boutin, S; Hossie, T J; Krebs, C J; O'Donoghue, M; Murray, D L

2017-07-01

To improve understanding of the complex and variable patterns of predator foraging behavior in natural systems, it is critical to determine how density-dependent predation and predator hunting success are mediated by alternate prey or predator interference. Despite considerable theory and debate seeking to place predator-prey interactions in a more realistic context, few empirical studies have quantified the role of alternate prey or intraspecific interactions on predator-prey dynamics. We assessed functional responses of two similarly sized, sympatric carnivores, lynx (Lynx canadensis) and coyotes (Canis latrans), foraging on common primary (snowshoe hares; Lepus americanus) and alternate (red squirrels; Tamiasciurus hudsonicus) prey in a natural system. Lynx exhibited a hyperbolic prey-dependent response to changes in hare density, which is characteristic of predators relying primarily on a single prey species. In contrast, the lynx-squirrel response was found to be linear ratio dependent, or inversely dependent on hare density. The coyote-hare and coyote-squirrel interactions also were linear and influenced by predator density. We explain these novel results by apparent use of spatial and temporal refuges by prey, and the likelihood that predators commonly experience interference and lack of satiation when foraging. Our study provides empirical support from a natural predator-prey system that (1) predation rate may not be limited at high prey densities when prey are small or rarely captured; (2) interference competition may influence the predator functional response; and (3) predator interference has a variable role across different prey types. Ultimately, distinct functional responses of predators to different prey types illustrates the complexity associated with predator-prey interactions in natural systems and highlights the need to investigate predator behavior and predation rate in relation to the broader ecological community. © 2017 by the Ecological

Conservation challenges of managing lynx

Treesearch

John R. Squires

2005-01-01

Yellowstone National Park is hallowed ground when it comes to wildlife in America. The very word “Yellowstone” conjures up images of grizzly bears digging tubers, bands of elk dotting the landscape, and gray wolves pursuing elk along the Lamar River. However, Yellowstone also provides habitat to one of the rarest cats in the continental United States: the...

A Fall fur-hunt from Maine to New Brunswick, Canada: The 1858 journal of Manly Hardy

USGS Publications Warehouse

Krohn, W.B.

2005-01-01

Ecologists, conservationists, and others increasingly ask questions that require a reliable understanding of natural conditions in the past. For example, when the US Fish and Wildlife Service proposed to list the Canada lynx (Lynx canadensis) under the Federal Endangered Species Act, there was a need to know the historical status of this species in the northeastern US. The natural history writings of Manly Hardy, a successful, nineteenth-century businessman and respected amateur naturalist from Brewer, ME, proved useful in assessing the lynx's historical status. Because of the wide array of potential uses of Hardy's writings, the objective of this paper is to make biologists and other scholars aware of Hardy, especially his 15 surviving journals, 1852-1899. Hardy left the most extensive published record of any of the naturalists who wrote about wildlife in Maine from the late 1800s through the early 1900s. His articles and essays covered a wide range of subjects about a variety of bird and mammal species. A recently published biographical sketch of Hardy contains an annotated bibliography of his publications along with the republication of 14 of his mammalian works. In contrast, this article contains an example of his unpublished journal writing with significant wildlife observations.

75 FR 60735 - Proposed Issuance of Incidental Take Permits to the Washington Department of Fish and Wildlife...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-01

..., Ute ladies' tresses, Columbian white-tailed deer, gray wolf, grizzly bear, lynx, pygmy rabbit, and the... the Wildlife Areas including: horseback riding and dog field trial events; construction, maintenance...

Modelling Landscape-Level Numerical Responses of Predators to Prey: The Case of Cats and Rabbits

PubMed Central

Cruz, Jennyffer; Glen, Alistair S.; Pech, Roger P.

2013-01-01

Predator-prey systems can extend over large geographical areas but empirical modelling of predator-prey dynamics has been largely limited to localised scales. This is due partly to difficulties in estimating predator and prey abundances over large areas. Collection of data at suitably large scales has been a major problem in previous studies of European rabbits (Oryctolagus cuniculus) and their predators. This applies in Western Europe, where conserving rabbits and predators such as Iberian lynx (Lynx pardinus) is important, and in other parts of the world where rabbits are an invasive species supporting populations of introduced, and sometimes native, predators. In pastoral regions of New Zealand, rabbits are the primary prey of feral cats (Felis catus) that threaten native fauna. We estimate the seasonal numerical response of cats to fluctuations in rabbit numbers in grassland–shrubland habitat across the Otago and Mackenzie regions of the South Island of New Zealand. We use spotlight counts over 1645 km of transects to estimate rabbit and cat abundances with a novel modelling approach that accounts simultaneously for environmental stochasticity, density dependence and varying detection probability. Our model suggests that cat abundance is related consistently to rabbit abundance in spring and summer, possibly through increased rabbit numbers improving the fecundity and juvenile survival of cats. Maintaining rabbits at low abundance should therefore suppress cat numbers, relieving predation pressure on native prey. Our approach provided estimates of the abundance of cats and rabbits over a large geographical area. This was made possible by repeated sampling within each season, which allows estimation of detection probabilities. A similar approach could be applied to predator-prey systems elsewhere, and could be adapted to any method of direct observation in which there is no double-counting of individuals. Reliable estimates of numerical responses are essential

Snapshot of viral infections in wild carnivores reveals ubiquity of parvovirus and susceptibility of Egyptian mongoose to feline panleukopenia virus.

PubMed

Duarte, Margarida D; Henriques, Ana Margarida; Barros, Sílvia Carla; Fagulha, Teresa; Mendonça, Paula; Carvalho, Paulo; Monteiro, Madalena; Fevereiro, Miguel; Basto, Mafalda P; Rosalino, Luís Miguel; Barros, Tânia; Bandeira, Victor; Fonseca, Carlos; Cunha, Mónica V

2013-01-01

endangered Iberian lynx (Lynx pardinus).

Snapshot of Viral Infections in Wild Carnivores Reveals Ubiquity of Parvovirus and Susceptibility of Egyptian Mongoose to Feline Panleukopenia Virus

PubMed Central

Duarte, Margarida D.; Henriques, Ana Margarida; Barros, Sílvia Carla; Fagulha, Teresa; Mendonça, Paula; Carvalho, Paulo; Monteiro, Madalena; Fevereiro, Miguel; Basto, Mafalda P.; Rosalino, Luís Miguel; Barros, Tânia; Bandeira, Victor; Fonseca, Carlos; Cunha, Mónica V.

2013-01-01

endangered Iberian lynx (Lynx pardinus). PMID:23527182

Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting

PubMed Central

Nie, W; Wang, J; Su, W; Wang, D; Tanomtong, A; Perelman, P L; Graphodatsky, A S; Yang, F

2012-01-01

Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species. PMID:22086079

New Platforms for Suborbital Astronomical Observations and In Situ Atmospheric Measurements: Spacecraft, Instruments, and Facilities

NASA Astrophysics Data System (ADS)

Rodway, K.; DeForest, C. E.; Diller, J.; Vilas, F.; Sollitt, L. S.; Reyes, M. F.; Filo, A. S.; Anderson, E.

2014-12-01

Suborbital astronomical observations have over 50 years' history using NASA's sounding rockets and experimental space planes. The new commercial space industry is developing suborbital reusable launch vehicles (sRLV's) to provide low-cost, flexible, and frequent access to space at ~100 km altitude. In the case of XCOR Aerospace's Lynx spacecraft, the vehicle design and capabilities work well for hosting specially designed experiments that can be flown with a human-tended researcher or alone with the pilot on a customized mission. Some of the first-generation instruments and facilities that will conduct solar observations on dedicated Lynx science missions include the SwRI Solar Instrument Pointing Platform (SSIPP) and Atsa Suborbital Observatory, as well as KickSat sprites, which are picosatellites for in situ atmospheric and solar phenomena measurements. The SSIPP is a demonstration two-stage pointed solar observatory that operates inside the Lynx cockpit. The coarse pointing stage includes the pilot in the feedback loop, and the fine stage stabilizes the solar image to achieve arcsecond class pointing. SSIPP is a stepping-stone to future external instruments that can operate with larger apertures and shorter wavelengths in the solar atmosphere. The Planetary Science Institute's Atsa Suborbital Observatory combines the strengths of ground-based observatories and space-based observing to create a facility where a telescope is maintained and used interchangeably with either in-house facility instruments or user-provided instruments. The Atsa prototype is a proof of concept, hand-guided camera that mounts on the interior of the Lynx cockpit to test target acquisition and tracking for human-operated suborbital astronomy. KickSat sprites are mass-producible, one inch printed circuit boards (PCBs) populated by programmable off the shelf microprocessors and radios for real time data transmission. The sprite PCBs can integrate chip-based radiometers, magnetometers

The role of predation and food limitation on claims for compensation, reindeer demography and population dynamics

PubMed Central

Tveraa, Torkild; Stien, Audun; Brøseth, Henrik; Yoccoz, Nigel G

2014-01-01

A major challenge in biodiversity conservation is to facilitate viable populations of large apex predators in ecosystems where they were recently driven to ecological extinction due to resource conflict with humans. Monetary compensation for losses of livestock due to predation is currently a key instrument to encourage human–carnivore coexistence. However, a lack of quantitative estimates of livestock losses due to predation leads to disagreement over the practice of compensation payments. This disagreement sustains the human–carnivore conflict. The level of depredation on year-round, free-ranging, semi-domestic reindeer by large carnivores in Fennoscandia has been widely debated over several decades. In Norway, the reindeer herders claim that lynx and wolverine cause losses of tens of thousands of animals annually and cause negative population growth in herds. Conversely, previous research has suggested that monetary predator compensation can result in positive population growth in the husbandry, with cascading negative effects of high grazer densities on the biodiversity in tundra ecosystems. We utilized a long-term, large-scale data set to estimate the relative importance of lynx and wolverine predation and density-dependent and climatic food limitation on claims for losses, recruitment and population growth rates in Norwegian reindeer husbandry. Claims of losses increased with increasing predator densities, but with no detectable effect on population growth rates. Density-dependent and climatic effects on claims of losses, recruitment and population growth rates were much stronger than the effects of variation in lynx and wolverine densities. Synthesis and applications. Our analysis provides a quantitative basis for predator compensation and estimation of the costs of reintroducing lynx and wolverine in areas with free-ranging semi-domestic reindeer. We outline a potential path for conflict management which involves adaptive monitoring programmes, open

The Atsa Suborbital Observatory: An Observatory for a Commercial Suborbital Spacecraft

NASA Astrophysics Data System (ADS)

Vilas, F.; Sollitt, L. S.

2012-12-01

instruments or user-provided instruments. Rapid turnaround will depend only on flight frequency. Data are stored on-board for retrieval when the spacecraft lands. We provide robust instrumentation that can survive suborbital spaceflight, assessment of the feasibility of the requested observations, rigorous scripting of the telescope operation, integration of the telescope plus instrument in a provider spacecraft, and periodic preventive maintenance for the telescope and instrument suite. XCOR Aerospace's Lynx III spacecraft is the best candidate vehicle to host a suborbital astronomical observatory. Unlike other similar vehicles, the Lynx will operate with only 1 or 2 people onboard (the pilot and an operator), allowing for each mission to be totally dedicated to the observation (no tourists will be bumping about; no other experiments will affect spacecraft pointing). A stable platform, the Lynx can point to an accuracy of ± 0.5o. Fine pointing is done by the telescope system. Best of all, the Lynx has a dorsal pod that opens directly to space. For astronomical observations, the best window is NO window. Currently, we plan to deploy a 20" diameter telescope in the Lynx III dorsal pod. XCOR Aerospace has the goal of eventually maintaining a Lynx flight frequency capability of 4 times/day. As with any observatory, Atsa will be available for observations by the community at large.

A strategy for screening and identifying mycotoxins in herbal medicine using ultra-performance liquid chromatography with tandem quadrupole time-of-flight mass spectrometry.

PubMed

Fang, Lian-xiang; Xiong, Ai-zhen; Wang, Rui; Ji, Shen; Yang, Li; Wang, Zheng-tao

2013-09-01

The objective of this study was to develop an effective strategy for screening and identifying mycotoxins in herbal medicine (HM). Here, Imperatae Rhizoma, a commonly used Chinese herb, was selected as a model HM. A crude drug contaminated with fungi was analyzed by comparing with uncontaminated ones. Ultra-performance LC coupled to tandem quadrupole TOF-MS (UPLC-Q-TOF-MS) with collision energy function was applied to analyze different samples from Imperatae Rhizoma. Then, MarkerLynx(TM) software was employed to screen the excess components in analytes, compared with control samples, and those selected markers were likely to be the metabolites of fungi. Furthermore, each of the accurate masses of the markers obtained from MarkerLynx(TM) was then searched in a mycotoxins/fungal metabolites database established in advance. The molecular formulas with relative mass error between the measured and theoretical mass within 5 ppm were chosen and then applied to MassFragment(TM) analysis for further confirmation of their structures. With the use of this approach, five mycotoxins that have never been reported in HM were identified in contaminated Imperatae Rhizoma. The results demonstrate the potential of UPLC-Q-TOF-MS coupled with the MarkerLynx(TM) software and MassFragment(TM) tool as an efficient and convenient method to screen and identify mycotoxins in herbal materials and aid in the quality control of HM. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Sarcoptic mange in Swedish wildlife.

PubMed

Mörner, T

1992-12-01

Mange caused by Sarcoptes scabiei var. vulpes appeared among red foxes (Vulpes vulpes) in Scandinavia (south-west Finland) for the first time in this century in 1967. The disease was most probably introduced by foxes crossing the Gulf of Finland from Estonia. The mange epizootic spread northwards through Finland and reached Sweden in late 1975, when mangy foxes appeared in the northern part of the country. In 1984, mange was observed in most parts of Sweden. The disease was observed to spread rapidly in boreal areas, whereas it spread more slowly in agricultural areas. Mortality due to mange was very high. The duration of the disease before death due to emaciation has been shown experimentally to be over 90 days. An outbreak of fox mange among Arctic foxes (Alopex lagopus) occurred in 1986. The local population of Arctic foxes was caught and successfully treated. The following year, treated foxes were caught again and no signs of disease were found. Sporadic cases of fox mange have also been diagnosed in lynx (Lynx lynx), pine marten (Martes martes) and domestic dogs. Single cases have been observed in other species: wolf (Canis lupus), mountain hare (Lepus timidus), domestic cat and horse. No cases of sarcoptic mange have been recorded in the badger (Meles meles). At present, although fox mange occurs as an epizootic in local populations, the number of foxes has increased again in many parts of Sweden.

Examining spatial patterns of selection and use for an altered predator guild

USGS Publications Warehouse

Organ, John F.; Mumma, Matthew; Holbrook, Joseph D.; Rayl, Nathaniel D.; Zieminski, Christopher J.; Fuller, Todd K.; Mahoney, Shane P.; Waits, Lisette P.

2017-01-01

Anthropogenic disturbances have altered species’ distributions potentially impacting interspecific interactions. Interference competition is when one species denies a competing species access to a resource. One mechanism of interference competition is aggression, which can result in altered space-use of a subordinate species due to the threat of harm, otherwise known as a ‘landscape of fear’. Alternatively, subordinates might outcompete dominant species in resource-poor environments via a superior ability to extract resources. Our goal was to evaluate spatial predictions of the ‘landscape of fear’ hypothesis for a carnivore guild in Newfoundland, Canada, where coyotes recently immigrated. Native Newfoundland carnivores include red foxes, Canada lynx, and black bears. We predicted foxes and lynx would avoid coyotes because of their larger size and similar dietary niches. We used scat-detecting dogs and genetic techniques to locate and identify predator scats. We then built resource selection functions and tested for avoidance by incorporating predicted values of selection for the alternative species into the best supported models of each species. We found multiple negative relationships, but notably did not find avoidance by foxes of areas selected by coyotes. While we did find that lynx avoided coyotes, we also found a reciprocal relationship. The observed patterns suggest spatial partitioning and not coyote avoidance, although avoidance could still be occurring at different spatial or temporal scales. Furthermore, Newfoundland’s harsh climate and poor soils may swing the pendulum of interspecific interactions from interference competition to exploitative competition, where subordinates outcompete dominant competitors through a superior ability to extract resources.

Examining spatial patterns of selection and use for an altered predator guild.

PubMed

Mumma, Matthew A; Holbrook, Joseph D; Rayl, Nathaniel D; Zieminski, Christopher J; Fuller, Todd K; Organ, John F; Mahoney, Shane P; Waits, Lisette P

2017-12-01

Anthropogenic disturbances have altered species' distributions potentially impacting interspecific interactions. Interference competition is when one species denies a competing species access to a resource. One mechanism of interference competition is aggression, which can result in altered space-use of a subordinate species due to the threat of harm, otherwise known as a 'landscape of fear'. Alternatively, subordinates might outcompete dominant species in resource-poor environments via a superior ability to extract resources. Our goal was to evaluate spatial predictions of the 'landscape of fear' hypothesis for a carnivore guild in Newfoundland, Canada, where coyotes recently immigrated. Native Newfoundland carnivores include red foxes, Canada lynx, and black bears. We predicted foxes and lynx would avoid coyotes because of their larger size and similar dietary niches. We used scat-detecting dogs and genetic techniques to locate and identify predator scats. We then built resource selection functions and tested for avoidance by incorporating predicted values of selection for the alternative species into the best supported models of each species. We found multiple negative relationships, but notably did not find avoidance by foxes of areas selected by coyotes. While we did find that lynx avoided coyotes, we also found a reciprocal relationship. The observed patterns suggest spatial partitioning and not coyote avoidance, although avoidance could still be occurring at different spatial or temporal scales. Furthermore, Newfoundland's harsh climate and poor soils may swing the pendulum of interspecific interactions from interference competition to exploitative competition, where subordinates outcompete dominant competitors through a superior ability to extract resources.

Status assessment of the Endangered snow leopard Panthera uncia and other large mammals in the Kyrgyz Alay, using community knowledge corrected for imperfect detection

USGS Publications Warehouse

Taubmann, Julia; Sharma, Koustubh; Uulu, Kubanychbek Zhumabai; Hines, James; Mishra, Charudutt

2015-01-01

The Endangered snow leopard Panthera uncia occurs in the Central Asian Mountains, which cover c. 2 million km2. Little is known about its status in the Kyrgyz Alay Mountains, a relatively narrow stretch of habitat connecting the southern and northern global ranges of the species. In 2010 we gathered information on current and past (1990, the last year of the Soviet Union) distributions of snow leopards and five sympatric large mammals across 14,000 km2 of the Kyrgyz Alay. We interviewed 95 key informants from local communities. Across 49 400-km2 grid cells we obtained 1,606 and 962 records of species occurrence (site use) in 1990 and 2010, respectively. The data were analysed using the multi-season site occupancy framework to incorporate uncertainty in detection across interviewees and time periods. High probability of use by snow leopards in the past was recorded in > 70% of the Kyrgyz Alay. Between the two sampling periods 39% of sites showed a high probability of local extinction of snow leopard. We also recorded high probability of local extinction of brown bear Ursus arctos (84% of sites) and Marco Polo sheep Ovis ammon polii (47% of sites), mainly in regions used intensively by people. Data indicated a high probability of local colonization by lynx Lynx lynx in 41% of the sites. Although wildlife has declined in areas of central and eastern Alay, regions in the north-west, and the northern and southern fringes appear to retain high conservation value.

Carnivore-caused livestock mortality in Trans-Himalaya.

PubMed

Namgail, Tsewang; Fox, Joseph L; Bhatnagar, Yash Veer

2007-04-01

The loss of livestock to wild predators is an important livelihood concern among Trans-Himalayan pastoralists. Because of the remoteness and inaccessibility of the region, few studies have been carried out to quantify livestock depredation by wild predators. In the present study, we assessed the intensity of livestock depredation by snow leopard Uncia uncia, Tibetan wolf Canis lupus chanku, and Eurasian lynx Lynx l. isabellina in three villages, namely Gya, Rumtse, and Sasoma, within the proposed Gya-Miru Wildlife Sanctuary in Ladakh, India. The three villages reported losses of 295 animals to these carnivores during a period of 2.5 years ending in early 2003, which represents an annual loss rate of 2.9% of their livestock holdings. The Tibetan wolf was the most important predator, accounting for 60% of the total livestock loss because of predation, followed by snow leopard (38%) and lynx (2%). Domestic goat was the major victim (32%), followed by sheep (30%), yak (15%), and horse (13%). Wolves killed horses significantly more and goats less than would be expected from their relative abundance. Snow leopards also killed horses significantly more than expected, whereas they killed other livestock types in proportion to their abundance. The three villages combined incurred an estimated annual monetary loss of approximately $USD 12,120 amounting to approximately $USD 190/household/y. This relatively high total annual loss occurred primarily because of depredation of the most valuable livestock types such as yak and horse. Conservation actions should initially attempt to target decrease of predation on these large and valuable livestock species.

Seroprevalences of antibodies to Neospora caninum and Toxoplasma gondii in zoo animals.

PubMed

Sedlák, K; Bártová, E

2006-03-31

Neospora caninum is an apicomplexan parasite that causes neuromuscular disease in dogs and abortions in cattle. Little is known about the prevalence of antibodies to this parasite in zoo animals. Sera from 556 animals, from 13 Czech and Slovak zoos were tested for antibodies to N. caninum and Toxoplasma gondii by indirect fluorescent antibody test. Antibodies to N. caninum were found in 31 of 556 zoo animals (5.6%), representing 18 of 114 species tested: Eurasian wolf (Canis lupus lupus), Maned wolf (Chrysocyon brachyurus), fennec (Vulpes zerda), cheetah (Acinonyx jubatus), jaguarundi (Herpailurus yaguarondi), Eurasian lynx (Lynx lynx), Indian lion (Panthera leo goojratensis), fisher (Martes pennanti), blackbuck (Antilope cervicapra), European bison (Bison bonasus), lechwe (Kobus leche), African buffalo (Syncerus caffer caffer), eland (Taurotragus oryx), sitatunga (Tragelaphus spekei gratus), Thorold's deer (Cervus albirostris), Eastern elk (C. elaphus canadensis), Vietnam sika deer (C. nippon pseudaxis) and Père David's deer (Elaphurus davidianus). Titres ranged from 1:40 to 1:2560. The highest prevalence 50% was found in family mustelidae of the order carnivora. Antibodies to T. gondii were detected in 193 of 556 zoo animals (34.7%) representing 72 of 114 species tested, with titres ranging from 1:40 to 1:40960. The highest prevalence 100% was found in families: hyaenidae, mustelidae, ursidae and viveridae of the order carnivora. The results of this study indicate that zoo animals have more exposure to T. gondii than to N. caninum. It is the first report of seroprevalence of antibodies to N. caninum in European zoo animals.

Emergence of canine distemper virus strains with modified molecular signature and enhanced neuronal tropism leading to high mortality in wild carnivores.

PubMed

Origgi, F C; Plattet, P; Sattler, U; Robert, N; Casaubon, J; Mavrot, F; Pewsner, M; Wu, N; Giovannini, S; Oevermann, A; Stoffel, M H; Gaschen, V; Segner, H; Ryser-Degiorgis, M-P

2012-11-01

An ongoing canine distemper epidemic was first detected in Switzerland in the spring of 2009. Compared to previous local canine distemper outbreaks, it was characterized by unusually high morbidity and mortality, rapid spread over the country, and susceptibility of several wild carnivore species. Here, the authors describe the associated pathologic changes and phylogenetic and biological features of a multiple highly virulent canine distemper virus (CDV) strain detected in and/or isolated from red foxes (Vulpes vulpes), Eurasian badgers (Meles meles), stone (Martes foina) and pine (Martes martes) martens, from a Eurasian lynx (Lynx lynx), and a domestic dog. The main lesions included interstitial to bronchointerstitial pneumonia and meningopolioencephalitis, whereas demyelination--the classic presentation of CDV infection--was observed in few cases only. In the brain lesions, viral inclusions were mainly in the nuclei of the neurons. Some significant differences in brain and lung lesions were observed between foxes and mustelids. Swiss CDV isolates shared together with a Hungarian CDV strain detected in 2004. In vitro analysis of the hemagglutinin protein from one of the Swiss CDV strains revealed functional and structural differences from that of the reference strain A75/17, with the Swiss strain showing increased surface expression and binding efficiency to the signaling lymphocyte activation molecule (SLAM). These features might be part of a novel molecular signature, which might have contributed to an increase in virus pathogenicity, partially explaining the high morbidity and mortality, the rapid spread, and the large host spectrum observed in this outbreak.

Large Scale Visual Recognition

DTIC Science & Technology

2012-06-01

mammal jelly fungus living thing man s animal orangutan mammal cougar mammal mammal German shepherd hyena red fox Flat Ours sailboat catamaran...snow leopard feline o er living thing conch en y wheelbarrow carnivore orangutan mammal meerkat mammal carnivore polar bear lynx lion Flat

Atypical fatal sarcocystosis associated with Sarcocystis neurona in a white-nosed coati (Nasua narica molaris)

USDA-ARS?s Scientific Manuscript database

The protozoan parasite Sarcocystis neurona is an important cause of disease in horses (equine protozoal myeloencephalitis, EPM) and in marine mammals. Isolated reports of clinical EPM-like disease have also been documented in a zebra, raccoon, domestic cat, domestic dog, ferret, skunk, mink, lynx, R...

Characterization of Botulinum Progenitor Toxins by Mass Spectrometry

DTIC Science & Technology

2005-08-01

and proteases by NTNH to HA-33 assistance in binding to and translocating progenitor toxin(s) through alimentary epithelial barriers (11, 12, 24...performed using peak list files generated by MassLynx (v3.5) and the following parameters: the National Center for Biotechnology Information

78 FR 17632 - Caribou-Targhee National Forest; Idaho and Wyoming; Amendment to the Targhee Revised Forest Plan...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-22

...; Amendment to the Targhee Revised Forest Plan--Canada Lynx Habitat AGENCY: Forest Service, USDA. ACTION... Forest proposes to amend the Targhee Revised Forest Plan (1997) to include a map identifying specific... Administrative Review Process: The decision on this proposed plan amendment will be subject to the objection...

Analysis of the seasonal activity rate of sympatric carnivores and their prey in Saguaro National Park

Treesearch

Mary Beth Benton; Siria A. Cerda-Navarro; Katie R. Keck; Brittany N. McKnight

2013-01-01

We investigated the monthly activity rates of bobcats (Lynx rufus), gray foxes (Urocyon cinereoargenteus) and four of their potential prey species, antelope jackrabbits (Lepus alleni), black-tailed jackrabbits (Lepus californicus), desert cottontails (Sylvilagus audubonii) and eastern cottontails (Sylvilagus floridanus), in Saguaro National Park using remote camera...

Book review: Handbook of the birds of the world, Volume 8, Broadbills to Tapaculos

USGS Publications Warehouse

Gustafson, Mary

2004-01-01

No abstract available.Review info: Handbook of the Birds of the World, Volume 8, Broadbills to Tapaculos. Edited by Josep del Hoyo, Andrew Elliott, and David Christie. Lynx Edicions, Barcelona, Spain. 2003: 845 pp., 81 color plates, over 470 color photographs, 672 maps. ISBN: 8487334504, $195.00 (cloth)

Survival of white-tailed deer neonates in Louisiana

Treesearch

Rebecca M. Shuman; Michael J. Cherry; Taylor N. Simoneaux; Elizabeth A. Dutoit; John C. Kilgo; Michael J. Chamberlain; Karl V. Miller

2017-01-01

Changing predator communities have potential to complicate management focused on ensuring sustainable white-tailed deer (Odocoileus virginianus) populations. Recent research reported that predation on neonates by coyotes (Canis latrans) and bobcats (Lynx rufus) can limit recruitment. However, no research has been conducted in areas of the southeastern United States...

The Effectiveness of Remotely Piloted Aircraft in a Permissive Hunter-Killer Scenario

DTIC Science & Technology

2014-01-01

APY -8, Lynx Block 20. 20 Specific Scenario In our scenario, prior intelligence has indicated that the target is likely to emerge from hiding...an additional 5 sec. must be taken to transfer (digitally) the target geolocation data to the strike platform. (Unlike in Case 1, it was not

SMBH Seeds: Model Discrimination with High-energy Emission Based on Scaling Relation Evolution

NASA Astrophysics Data System (ADS)

Ben-Ami, Sagi; Vikhlinin, Alexey; Loeb, Abraham

2018-02-01

We explore the expected X-ray (0.5–2 keV) signatures from supermassive black holes (SMBHs) at high redshifts (z∼ 5{--}12) assuming various models for their seeding mechanism and evolution. Seeding models are approximated through deviations from the {M}{BH}{--}σ relation observed in the local universe, while N-body simulations of the large-scale structure are used to estimate the density of observable SMBHs. We focus on two seeding model families: (i) light seed BHs from remnants of Pop-III stars and (ii) heavy seeds from the direct collapse of gas clouds. We investigate several models for the accretion history, such as sub-Eddington accretion, slim disk models, and torque-limited growth models. We consider observations with two instruments: (i) the Chandra X-ray Observatory and (ii) the proposed Lynx. We find that all of the simulated models are in agreement with the current results from the Chandra Deep Field South, i.e., consistent with zero SMBHs in the field of view. In deep Lynx exposures, the number of observed objects is expected to become statistically significant. We demonstrate the capability to limit the phase space of plausible scenarios of the birth and evolution of SMBHs by performing deep observations at a flux limit of 1× {10}-19 {erg} {{cm}}-2 {{{s}}}-1. Finally, we show that our models are in agreement with current limits on the cosmic X-ray background (CXRB) and the expected contribution from unresolved quasars. We find that an analysis of CXRB contributions down to the Lynx confusion limit yields valuable information that can help identify the correct scenario for the birth and evolution of SMBHs.

78 FR 32270 - Kenai National Wildlife Refuge, Soldotna, AK; Environmental Impact Statement for the Shadura...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

.... (CIRI), owns the subsurface estate of coal, oil, and gas in the project area. The project would be in... and brown bears, lynx, snowshoe hares, and numerous species of Neotropical birds, such as olive-sided... within the Refuge, portions of the subsurface estate, consisting of the oil, gas, and coal are owned by...

Wildlife scientists and wilderness managers finding common ground with noninvasive and nonintrusive sampling of wildlife

Treesearch

Michael K. Schwartz; Peter B. Landres; David J. Parsons

2011-01-01

Iconic wildlife species such as grizzly bears, wolves, lynx, and wolverines are often associated with wilderness. Wilderness may provide some of the last, and best, remaining places for such species because wilderness can offer long-term legislated protection, relatively large areas, and remoteness (Mattson 1997). Indeed, the word wilderness in its original form...

Seroprevalence of Toxoplasma gondii infection in captive mammals in three zoos in Mexico City, Mexico

USDA-ARS?s Scientific Manuscript database

Antibodies to Toxoplasma gondii were determined in 167 mammals in 3 zoos in Mexico City, Mexico using the modified agglutination test (MAT). Overall, antibodies to T. gondii were found in 89 (53.3%) of the 167 animals tested. Antibodies were found in 35 of 43 wild Felidae: 2 of 2 bobcats (Lynx rufus...

Thelazia callipaeda in wild carnivores from Romania: new host and geographical records.

PubMed

Mihalca, Andrei Daniel; Ionică, Angela Monica; D'Amico, Gianluca; Daskalaki, Aikaterini Alexandra; Deak, Georgiana; Matei, Ioana Adriana; Șimonca, Vasile; Iordache, Daniel; Modrý, David; Gherman, Călin Mircea

2016-06-18

Thelazia callipaeda is a vector-borne zoonotic nematode parasitizing the conjunctival sac of domestic and wild carnivores, rabbits and humans, with a vast distribution in Asia and the former Soviet Union. In Europe, the nematode has an emerging trend, being reported in Italy, France, Switzerland, Germany, Spain, Portugal, Bosnia and Herzegovina, Croatia, Romania, Greece and Serbia, with human cases known in Italy, France, Spain, Serbia and Croatia. In Romania, the infection was so far reported only in dogs, whereas there are no reports in wildlife despite the large numbers of wild carnivores in the country. The aim of this study was to evaluate the role of wild carnivores in the natural cycle of T. callipaeda in Romania. Between 2014 and 2016, 89 wild carnivores (64 golden jackals, Canis aureus, 13 grey wolves, Canis lupus, nine wildcats, Felis silvestris and three Eurasian lynxes, Lynx lynx) have been examined. During the necropsy, both eyes of all the examined animals have been thoroughly inspected for the presence of parasites. If present, all nematodes were collected in absolute ethanol (for molecular analysis of the partial cox1 gene) or in 4 % formalin (for morphological identification). In total, three animals were found to be infected with T. callipaeda: a grey wolf, a golden jackal and a wildcat. The BLAST analysis of all the sequences showed a 100 % similarity to T. callipaeda haplotype h1. To the best of our knowledge, this study represents the first report of T. callipaeda in golden jackals, and the first study on T. callipaeda in wildlife from Romania. Our data broaden the host spectrum and geographical distribution of T. callipaeda, highlighting the role of wild carnivores as natural reservoirs for the infection and confirming the ongoing expanding trend of this zoonotic nematode in Europe.

Effects of porcine zona pellucida immunocontraceptives in zoo felids.

PubMed

Harrenstien, Lisa A; Munson, Linda; Chassy, Lisa M; Liu, Irwin K M; Kirkpatrick, Jay F

2004-09-01

Methods of contraception are necessary for management of zoo felids; however, the most commonly used contraceptive (melengestrol acetate implant) is associated with serious adverse reactions with long-term use. Porcine zona pellucida (pZP) vaccines are promising as contraceptives, but their safety in zoo felids has not been tested. pZP vaccine was administered to 27 female felids representing 10 species, including African lion (Panthera leo), Asian leopard (P. pardus), jaguar (P. onca), tiger (P. tigris), snow leopard (P. uncia), cougar (Felis concolor), Siberian lynx (F. lynx), Canada lynx (F. canadensis), serval (F. serval), and bobcat (F. rufus), in 15 facilities. Over 6 wk, each animal received three i.m. injections of 65 microg pZP with Freund's complete adjuvant (FCA), Freund's incomplete adjuvant, or carbopol as the adjuvant. Behavioral signs of estrus were seen in 14 of the vaccinated felids. An unacceptably high incidence of adverse reactions was seen including injection site swelling, lameness, limb swelling, or abscessation (or all) in five felids after injection with FCA as the initial adjuvant. Adverse behavioral signs, including increased irritability and aggression, were seen in four felids. Six of the felids were assayed for antibodies against pZP during the 12 mo after vaccination; all showed antibody production. Antibody levels appeared to peak 1-4 mo after vaccination began, although elevated antibody levels persisted in two animals for > 12 mo after the first injection. All vaccinated felids were ovariohysterectomized 3-13 mo after vaccination. Folliculogenesis was present in all treated animals, and there was no histopathologic evidence of inflammatory damage to ovaries. Contraceptive efficacy was not specifically evaluated in this study; however, two of the three felids housed with an intact male became pregnant during the study, one of which gave birth to healthy cubs.

How a Picture Book Happens.

ERIC Educational Resources Information Center

Bonners, Susan

1994-01-01

The author and illustrator of a picture book about the life cycle of the lynx describes the research and development process she used to create the book. Contacts with wildlife biologists, presenting the predator/prey relationship, creating pictures and text, drawing from life, and creating the book jacket are among the topics covered. (KRN)

Chapter 7: Information needs and a research strategy for conserving forest carnivores

Treesearch

Leonard F. Ruggiero; Steven W. Buskirk; Keith B. Aubry; L. Jack Lyon; William J. Zielinski

1994-01-01

This forest carnivore conservation assessment summarizes what is known about the biology and ecology of the American marten, fisher, lynx, and wolverine. It is the first step in ascertaining what information we need to develop a scientifically sound strategy for species conservation. Although this assessment implies that we know what information we need to prescribe...

Chapter 6: The scientific basis for conserving forest carnivores: considerations for management

Treesearch

L. Jack Lyon; Keith B. Aubry; William J. Zielinski; Steven W. Buskirk; Leonard F. Ruggiero

1994-01-01

The reviews presented in previous chapters reveal substantial gaps in our knowledge about marten, fisher, lynx, and wolverine. These gaps severely constrain our ability to design reliable conservation strategies. This problem will be explored in depth in Chapter 7. In this chapter, our objective is to discuss management considerations resulting from what we currently...

Effects of climate change on wildlife in the Northern Rockies [Chapter 8

Treesearch

Kevin S. McKelvey; Polly C. Buotte

2018-01-01

Few data exist on the direct effects of climatic variability and change on animal species. Therefore, projected climate change effects must be inferred from what is known about habitat characteristics and the autecology of each species. Habitat for mammals, including predators (Canada lynx, fisher, wolverine) and prey (snowshoe hare) that depend on high-elevation,...

A rapid field test for sylvatic plague exposure in wild animals.

PubMed

Abbott, Rachel C; Hudak, Robert; Mondesire, Roy; Baeten, Laurie A; Russell, Robin E; Rocke, Tonie E

2014-04-01

Plague surveillance is routinely conducted to predict future epizootics in wildlife and exposure risk for humans. The most common surveillance method for sylvatic plague is detection of antibodies to Yersinia pestis F1 capsular antigen in sentinel animals, such as coyotes (Canis latrans). Current serologic tests for Y. pestis, hemagglutination (HA) test and enzyme-linked immunosorbent assay (ELISA), are expensive and labor intensive. To address this need, we developed a complete lateral flow device for the detection of specific antibodies to Y. pestis F1 and V antigens. Our test detected anti-F1 and anti-V antibodies in serum and Nobuto filter paper samples from coyotes, and in serum samples from prairie dogs (Cynomys ludovicianus), lynx (Lynx canadensis), and black-footed ferrets (Mustela nigripes). Comparison of cassette results for anti-F1 and anti-V antibodies with results of ELISA or HA tests showed correlations ranging from 0.68 to 0.98. This device provides an affordable, user-friendly tool that may be useful in plague surveillance programs and as a research tool.

A rapid field test for sylvatic plague exposure in wild animals

USGS Publications Warehouse

Abbott, Rachel C.; Hudak, Robert; Mondesire, Roy; Baeten, Laurie A.; Russell, Robin E.; Rocke, Tonie E.

2014-01-01

Plague surveillance is routinely conducted to predict future epizootics in wildlife and exposure risk for humans. The most common surveillance method for sylvatic plague is detection of antibodies to Yersinia pestis F1 capsular antigen in sentinel animals, such as coyotes (Canis latrans). Current serologic tests for Y. pestis, hemagglutination (HA) test and enzyme-linked immunosorbent assay (ELISA), are expensive and labor intensive. To address this need, we developed a complete lateral flow device for the detection of specific antibodies to Y. pestis F1 and V antigens. Our test detected anti-F1 and anti-V antibodies in serum and Nobuto filter paper samples from coyotes, and in serum samples from prairie dogs (Cynomys ludovicianus), lynx (Lynx canadensis), and black-footed ferrets (Mustela nigripes). Comparison of cassette results for anti-F1 and anti-V antibodies with results of ELISA or HA tests showed correlations ranging from 0.68 to 0.98. This device provides an affordable, user-friendly tool that may be useful in plague surveillance programs and as a research tool.

Virological Survey in free-ranging wildcats (Felis silvestris) and feral domestic cats in Portugal.

PubMed

Duarte, A; Fernandes, M; Santos, N; Tavares, L

2012-08-17

To determine the presence of viral pathogens in natural areas a survey was conducted on an opportunistic sample of fifty eight wild (Felis silvestris silvestris) and feral cats (F. s. catus). The biological materials included serum, lung tissue extract and stool. Feline leukemia virus p27 antigen was detected in 13/50 serum/lung tissue extract samples (26%), canine distemper virus antibodies were detected in 2/26 serum/lung tissue extract samples (7.7%), feline coronavirus RNA was present in 6/29 stool samples (20.7%) and feline parvovirus DNA in 2/29 stool samples (6.9%). Canine distemper virus RNA was not detected. Feline immunodeficiency virus and feline coronavirus antibodies were not detected. Evidence of exposure to feline leukemia virus, canine distemper virus, feline coronavirus and feline parvovirus was found in wild and feral cats raising the importance of performing a comprehensive survey to correctly evaluate the potential threat of infectious diseases to endangered species, namely to the wildcat and to the Iberian lynx, which is meant to be reintroduced after 2012 in Portugal. Copyright © 2012 Elsevier B.V. All rights reserved.

The genetics of the pre-Roman Iberian Peninsula: a mtDNA study of ancient Iberians.

PubMed

Sampietro, M L; Caramelli, D; Lao, O; Calafell, F; Comas, D; Lari, M; Agustí, B; Bertranpetit, J; Lalueza-Fox, C

2005-09-01

The Iberians developed a surprisingly sophisticated culture in the Mediterranean coast of the Iberian Peninsula from the 6th century BC until their conquest by the Romans in the 2nd century BC. They spoke and wrote a non-Indo-European language that still cannot be understood; their origins and relationships with other non-Indo-European peoples, like the Etruscans, are unclear, since their funerary practices were based on the cremation of bodies, and therefore anthropology has been unable to approach the study of this people. We have retrieved mitochondrial DNA (mtDNA) from a few of the scarce skeletal remains that have been preserved, some of them belonging to ritualistically executed individuals. The most stringent authentication criteria proposed for ancient DNA, such as independent replication, amino-acid analysis, quantitation of template molecules, multiple extractions and cloning of PCR products, have been followed to obtain reliable sequences from the mtDNA hypervariable region 1 (HVR1), as well as some haplogroup diagnostic SNPs. Phylogeographic analyses show that the haplogroup composition of the ancient Iberians was very similar to that found in modern Iberian Peninsula populations, suggesting a long-term genetic continuity since pre-Roman times. Nonetheless, there is less genetic diversity in the ancient Iberians than is found among modern populations, a fact that could reflect the small population size at the origin of the population sampled, and the heterogenic tribal structure of the Iberian society. Moreover, the Iberians were not especially closely related to the Etruscans, which points to considerable genetic heterogeneity in Pre-Roman Western Europe.

The military operator's experience of reliability and maintainability characteristics

NASA Astrophysics Data System (ADS)

Jones, R. Mcc.

An account is given of the British Army's approach to the achievement of high reliability and maintainability in rotorcraft during the procurement process. Attention is given to experience accumulated to date with the Gazelle, Scout, Agusta A109A, and Lynx helicopters; these offer lessons with respect to the Gem engine, fuel filtering, vibration, and an aircraft flight control system.

Abundance and food habits of cougars and bobcats in the Sierra San Luis, Sonora, Mexico

Treesearch

Hugo Luna Soria; Carlos A. Lopez Gonzalez

2005-01-01

Cougars (Puma concolor) and bobcats (Lynx rufus) are present throughout the Sky Islands of the Sonoran desert. We determined the abundance and food habits in northeastern Sonora, Mexico. Abundance indicated that cougars were common (4.19±5.57 cougars/100 km2 and 0.05±0.05 scats/km). According to the scat index, bobcats were more...

Installation and management of the SPS and LEP control system computers

NASA Astrophysics Data System (ADS)

Bland, Alastair

1994-12-01

Control of the CERN SPS and LEP accelerators and service equipment on the two CERN main sites is performed via workstations, file servers, Process Control Assemblies (PCAs) and Device Stub Controllers (DSCs). This paper describes the methods and tools that have been developed to manage the file servers, PCAs and DSCs since the LEP startup in 1989. There are five operational DECstation 5000s used as file servers and boot servers for the PCAs and DSCs. The PCAs consist of 90 SCO Xenix 386 PCs, 40 LynxOS 486 PCs and more than 40 older NORD 100s. The DSCs consist of 90 OS-968030 VME crates and 10 LynxOS 68030 VME crates. In addition there are over 100 development systems. The controls group is responsible for installing the computers, starting all the user processes and ensuring that the computers and the processes run correctly. The operators in the SPS/LEP control room and the Services control room have a Motif-based X window program which gives them, in real time, the state of all the computers and allows them to solve problems or reboot them.

A functional model for characterizing long-distance movement behaviour

USGS Publications Warehouse

Buderman, Frances E.; Hooten, Mevin B.; Ivan, Jacob S.; Shenk, Tanya M.

2016-01-01

Advancements in wildlife telemetry techniques have made it possible to collect large data sets of highly accurate animal locations at a fine temporal resolution. These data sets have prompted the development of a number of statistical methodologies for modelling animal movement.Telemetry data sets are often collected for purposes other than fine-scale movement analysis. These data sets may differ substantially from those that are collected with technologies suitable for fine-scale movement modelling and may consist of locations that are irregular in time, are temporally coarse or have large measurement error. These data sets are time-consuming and costly to collect but may still provide valuable information about movement behaviour.We developed a Bayesian movement model that accounts for error from multiple data sources as well as movement behaviour at different temporal scales. The Bayesian framework allows us to calculate derived quantities that describe temporally varying movement behaviour, such as residence time, speed and persistence in direction. The model is flexible, easy to implement and computationally efficient.We apply this model to data from Colorado Canada lynx (Lynx canadensis) and use derived quantities to identify changes in movement behaviour.

Implementation uncertainty when using recreational hunting to manage carnivores

PubMed Central

Bischof, Richard; Nilsen, Erlend B; Brøseth, Henrik; Männil, Peep; Ozoliņš, Jaānis; Linnell, John D C; Bode, Michael

2012-01-01

1. Wildlife managers often rely on resource users, such as recreational or commercial hunters, to achieve management goals. The use of hunters to control wildlife populations is especially common for predators and ungulates, but managers cannot assume that hunters will always fill annual quotas set by the authorities. It has been advocated that resource management models should account for uncertainty in how harvest rules are realized, requiring that this implementation uncertainty be estimated. 2. We used a survival analysis framework and long-term harvest data from large carnivore management systems in three countries (Estonia, Latvia and Norway) involving four species (brown bear, grey wolf, Eurasian lynx and wolverine) to estimate the performance of hunters with respect to harvest goals set by managers. 3. Variation in hunter quota-filling performance was substantial, ranging from 40% for wolverine in Norway to nearly 100% for lynx in Latvia. Seasonal and regional variation was also high within country–species pairs. We detected a positive relationship between the instantaneous potential to fill a quota slot and the relative availability of the target species for both wolverine and lynx in Norway. 4. Survivor curves and hazards – with survival time measured as the time from the start of a season until a quota slot is filled – can indicate the extent to which managers can influence harvest through adjustments of season duration and quota limits. 5. Synthesis and applications. We investigated seven systems where authorities use recreational hunting to manage large carnivore populations. The variation and magnitude of deviation from harvest goals was substantial, underlining the need to incorporate implementation uncertainty into resource management models and decisions-making. We illustrate how survival analysis can be used by managers to estimate the performance of resource users with respect to achieving harvest goals set by managers. The findings in this

PAnalyzer: a software tool for protein inference in shotgun proteomics.

PubMed

Prieto, Gorka; Aloria, Kerman; Osinalde, Nerea; Fullaondo, Asier; Arizmendi, Jesus M; Matthiesen, Rune

2012-11-05

Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA) approaches have emerged as an alternative to the traditional data dependent acquisition (DDA) in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS) software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file) files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates integration. PAnalyzer is an easy to use multiplatform and

PAnalyzer: A software tool for protein inference in shotgun proteomics

PubMed Central

2012-01-01

Background Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA) approaches have emerged as an alternative to the traditional data dependent acquisition (DDA) in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. Results In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS) software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file) files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. Conclusions We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates integration. PAnalyzer is an

Individual movement behavior, matrix heterogeneity, and the dynamics of spatially structured populations.

PubMed

Revilla, Eloy; Wiegand, Thorsten

2008-12-09

The dynamics of spatially structured populations is characterized by within- and between-patch processes. The available theory describes the latter with simple distance-dependent functions that depend on landscape properties such as interpatch distance or patch size. Despite its potential role, we lack a good mechanistic understanding of how the movement of individuals between patches affects the dynamics of these populations. We used the theoretical framework provided by movement ecology to make a direct representation of the processes determining how individuals connect local populations in a spatially structured population of Iberian lynx. Interpatch processes depended on the heterogeneity of the matrix where patches are embedded and the parameters defining individual movement behavior. They were also very sensitive to the dynamic demographic variables limiting the time moving, the within-patch dynamics of available settlement sites (both spatiotemporally heterogeneous) and the response of individuals to the perceived risk while moving. These context-dependent dynamic factors are an inherent part of the movement process, producing connectivities and dispersal kernels whose variability is affected by other demographic processes. Mechanistic representations of interpatch movements, such as the one provided by the movement-ecology framework, permit the dynamic interaction of birth-death processes and individual movement behavior, thus improving our understanding of stochastic spatially structured populations.

Exploration of the Use of Unmanned Aerial Vehicles along with Other Assets to Enhance Border Protection

DTIC Science & Technology

2009-06-01

Border Initiative SUAV Small Unmanned Aerial Vehicle SAR Synthetic Aperture Radar TTPs Tactics, Techniques, And Procedures TRVS Trailer Remote...2008). 4 3. Overview of Illegal Activities According to the CBP, 178,770 pounds of cocaine, 2,178 pounds of heroin, 2,471,931 pounds of marijuana ...Raytheon Company Web Site) Another component of Predator B is the high- resolution Lynx Synthetic Aperture Radar (SAR). In their study, Tsunoda, et

Geomorphology of the Iberian Continental Margin

NASA Astrophysics Data System (ADS)

Maestro, Adolfo; López-Martínez, Jerónimo; Llave, Estefanía; Bohoyo, Fernando; Acosta, Juan; Hernández-Molina, F. Javier; Muñoz, Araceli; Jané, Gloria

2013-08-01

The submarine features and processes around the Iberian Peninsula are the result of a complex and diverse geological and oceanographical setting. This paper presents an overview of the seafloor geomorphology of the Iberian Continental Margin and the adjacent abyssal plains. The study covers an area of approximately 2.3 million km2, including a 50 to 400 km wide band adjacent to the coastline. The main morphological characteristics of the seafloor features on the Iberian continental shelf, continental slope, continental rise and the surrounding abyssal plains are described. Individual seafloor features existing on the Iberian Margin have been classified into three main groups according to their origin: tectonic and/or volcanic, depositional and erosional. Major depositional and erosional features around the Iberian Margin developed in late Pleistocene-Holocene times and have been controlled by tectonic movements and eustatic fluctuations. The distribution of the geomorphological features is discussed in relation to their genetic processes and the evolution of the margin. The prevalence of one or several specific processes in certain areas reflects the dominant morphotectonic and oceanographic controlling factors. Sedimentary processes and the resulting depositional products are dominant on the Valencia-Catalán Margin and in the northern part of the Balearic Promontory. Strong tectonic control is observed in the geomorphology of the Betic and the Gulf of Cádiz margins. The role of bottom currents is especially evident throughout the Iberian Margin. The Galicia, Portuguese and Cantabrian margins show a predominance of erosional features and tectonically-controlled linear features related to faults.

Detection of Sarcocystis spp. infection in bobcats (Lynx rufus)

PubMed Central

Verma, S. K.; Calero-Bernal, R.; Lovallo, M. J.; Sweeny, A. R.; Grigg, M. E.; Dubey, J. P.

2015-01-01

The protozoan Sarcocystis neurona is an important cause of severe clinical disease of horses (called equine protozoal myeloencephalitis, EPM), marine mammals, companion animals, and several species of wildlife animals in the Americas. The Virginia opossum (Didelphis virginiana) is its definitive host in the USA and other animals act as intermediate or aberrant hosts. Samples of tongue and heart from 35 bobcats hunted for fur and food from Mississippi State, USA in February, 2014 were used for the present study. Muscles were examined for Sarcocystis infection by microscopic examination of either unfixed muscle squash preparations or pepsin digests, by histopathology of fixed samples, and by molecular methods. Sarcocystis-like bradyzoites were found in digests of 14 hearts and 10 tongues of 35 bobcats. In histological sections, sarcocysts were found in 26 of 35 bobcats; all appeared relatively thin-walled similar to S. felis sarcocysts under light microscope at 1000x magnification. S. neurona-like sarcocysts having thickened villar tips were seen in unstained muscle squash of tongue of two bobcats and PCR-DNA sequencing identified them definitively as S. neurona-like parasite. DNA extracted from bradyzoites obtained from tongue and heart muscle digests was analyzed by PCR-DNA sequencing at the ITS1 locus. Results indicated the presence of S. neurona-like parasite in 26 of 35 samples. ITS1 sequences identical to S. dayspi were identified in 3 bobcats, 2 of which were also co-infected with S. neurona-like parasite. The high prevalence of sarcocysts in bobcat tissues suggested an efficient sylvatic cycle of Sarcocystis spp. in the remote regions of Mississippi State with the bobcat as a relevant intermediate host. PMID:26138150

Proteomic profile of serum of pregnant women carring a fetus with Down syndrome using nano uplc Q-tof ms/ms technology.

PubMed

López Uriarte, Graciela Arelí; Burciaga Flores, Carlos Horacio; Torres de la Cruz, Víctor Manuel; Medina Aguado, María Magdalena; Gómez Puente, Viviana Maricela; Romero Gutiérrez, Liliana Nayeli; Martínez de Villarreal, Laura Elia

2018-06-01

Prenatal diagnosis of Down syndrome (DS) is based on the calculated risk of maternal age, biochemical and ultrasonographic markers and recently by cfDNA. Differences in proteomic profiles may give an opportunity to find new biomarkers. Characterize proteome of serum of mothers carrying DS fetus. Blood serum samples of three groups of women were obtained, (a) 10 non-pregnant, (b) 10 pregnant with healthy fetus by ultrasound evaluation, (c) nine pregnant with DS fetus. Sample preparation was as follows: Albumin/IgG depletion, desalting, and trypsin digestion; the process was performed in nanoUPLC MS/MS. Data analysis was made with Mass Lynx 4.1 and ProteinLynx Global Server 3.0, peptide and protein recognition by MASCOT algorithm and UNIPROT-Swissprot database. Each group showed different protein profiles. Some proteins were shared between groups. Only sera from pregnant women showed proteins related to immune and clot pathways. Mothers with DS fetus had 42 specific proteins. We found a different serum protein profile in mothers carrying DS fetuses that do not reflect expression of genes in the extra chromosome. Further studies will be necessary to establish the role of these proteins in aneuploid fetus and analyze their possible use as potential biomarkers.

Real-Time CORBA

DTIC Science & Technology

2000-10-01

control systems and prototyped the approach by porting the ILU ORB from Xerox to the Lynx real - time operating system . They then provided a distributed...compliant real - time operating system , a real-time ORB, and an ODMG-compliant real-time ODBMS [12]. The MITRE system is an infrastructure for...the server’s local operating system can handle. For instance, on a node controlled by the VXWorks real - time operating system with 256 local

PYCNOIB: Biodiversity and Biogeography of Iberian Pycnogonids

PubMed Central

Soler-Membrives, Anna; Munilla, Tomás

2015-01-01

Biodiversity and biogeographic studies comparing the distribution patterns of benthic marine organisms across the Iberian Atlantic and Mediterranean waters are scarce. The Pycnogonida (sea spiders) are a clear example of both endemicity and diversity, and are considered a key taxon to study and monitor biogeographic and biodiversity patterns. This is the first review that compiles data about abundance and diversity of Iberian pycnogonids and examines their biogeographic patterns and bathymetric constraints using GIS tools. A total of 17762 pycnogonid records from 343 localities were analyzed and were found to contain 65 species, 21 genera and 12 families. Achelia echinata and Ammothella longipes (family Acheliidae) were the most abundant comprising ~80% of the total records. The Acheliidae is also the most speciose in Iberian waters with 15 species. In contrast, the family Nymphonidae has 7 species but is significantly less abundant (<1% of the total records) than Acheliidae. Species accumulation curves indicate that further sampling would increase the number of Iberian species records. Current sampling effort suggests that the pycnogonid fauna of the Mediterranean region may be richer than that of the Atlantic. The Strait of Gibraltar and the Alboran Sea are recognized as species-rich areas that act as buffer zones between the Atlantic and Mediterranean boundaries. The deep waters surrounding the Iberian Peninsula are poorly surveyed, with only 15% of the sampling sites located below 1000 m. Further deep-water sampling is needed mainly on the Iberian Mediterranean side. PMID:25781483

Porting of EPICS to Real Time UNIX, and Usage Ported EPICS for FEL Automation

NASA Astrophysics Data System (ADS)

Salikova, Tatiana

This article describes concepts and mechanisms used in porting of EPICS (Experimental Physical and Industrial Control System) codes to platform of operating system UNIX. Without destruction of EPICS architecture, new features of EPICS provides the support for real time operating system LynxOS/x86 and equipment produced by INP (Budker Institute of Nuclear Physics). Application of ported EPICS reduces the cost of software and hardware is used for automation of FEL (Free Electron Laser) complex.

Crustal parameters in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Banda, E.

1988-06-01

The structure of the crust in the Iberian Peninsula has been investigated for the last 15 years by Spanish and Portuguese groups in close collaboration with other European institutions. The first experiments were carried out in Portugal (Mueller et al., 1973) with the aim of investigating the crustal structure of the Hercynian belt in the southwest corner of the Iberian peninsula. Other experiments have been subsequently realized to study different aspects of the crust in various regions of Portugal. In Spain the main effort has been focused in Alpine areas, with the first experiments in the Alboran Sea and the Betic Cordilleras (Working Group for Deep Seismic Sounding in Spain, 1974-1975, 1977; Working Group for Deep Seismic Sounding in the Alboran Sea, 1974-1975, 1978). Follow-up experiments until 1981 completed the work in the Betic Cordillera. Extensive experiments were carried out in the Pyrenees in 1978. Further surveys covered the Balearic Islands in 1976, the Valencia Trough in 1976 and 1983, and the Celtiberian Chain (or Iberic system) in 1981. The Hercynian belt has only been studied in detail in the northwest corner of Spain in 1982, with smaller studies in the central Iberian Massif in 1976 and 1986. Mostaanpour (1984) has compiled some crustal parameters (crustal thickness, average crustal velocity and Pn velocity) for western Europe. Meanwhile, more complete data are available for the Iberian Peninsula. The results presented here were derived from a large number of seismic refraction experiments which have been carried out mostly along or close to coastal areas of the Iberian Peninsula. Offshore explosions of various sizes were used as the energy source in most cases, in addition to some quarry blasts. Unfortunately this leaves most of the inner part of the Iberian Peninsula unsurveyed. Our purpose is to summarize some of the crustal parameters obtained so far and to detail the appropriate literature for the interested reader.

Ultrasonic monitoring of Iberian fat crystallization during cold storage

NASA Astrophysics Data System (ADS)

Corona, E.; García-Pérez, J. V.; Santacatalina, J. V.; Peña, R.; Benedito, J.

2012-12-01

The aim of this work was to evaluate the use of ultrasonic measurements to characterize the crystallization process and to assess the textural changes of Iberian fat and Iberian ham during cold storage. The ultrasonic velocity was measured in two types of Iberian fats (Montanera and Cebo) during cold storage (0, 2, 5, 7 and 10 °C) and in vacuum packaged Iberian ham stored at 6°C for 120 days. The fatty acid profile, thermal behaviour and textural properties of fat were determined. The ultrasonic velocity and textural measurements showed a two step increase during cold storage, which was related with the separate crystallization of two fractions of triglycerides. It was observed that the harder the fat, the higher the ultrasonic velocity. Likewise, Cebo fat resulted harder than Montanera due to a higher content of saturated triglycerides. The ultrasonic velocity in Iberian ham showed an average increase of 55 m/s after 120 days of cold storage due to fat crystallization. Thus, non-destructive ultrasonic technique could be a reliable method to follow the crystallization of fats and to monitor the changes in the textural properties of Iberian ham during cold storage.

Three-dimensional geologic modeling to determine the spatial attributes of hydrocarbon contamination, Noval Facility Fuel Farm, El Centro, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, C.; Mutch, S.; Padgett, D.

An investigation was conducted at the Naval Air Facility located in El Centro (NAFEC), to determine the vertical and horizontal extent of hydrocarbon contamination at the facilities fuel farm. The fuel products are the result of tank and pipeline leakage, past tank cleaning, and past disposal of fuel dispensing and filter cleaning practices. Subsurface soil and groundwater data was collected via soil borings, monitoring wells, and CPT probes. Soil, groundwater, and analytical data were integrated using the LYNX geoscience modeling system (GMS). Interactive sessions with the data visualizer helped guide the modeling and identify data gaps. Modeling results indicate amore » continuous surface confining clay layer to a depth of about 12 to 15 ft. Groundwater is confined beneath this clay layer and monitoring wells indicate about 3 to 5 ft of artesian head. Hydrocarbon contamination is concentrated within this clay layer from about 5 to 12 ft below the ground surface. Residual fuel products located in the groundwater are attributed to slow leakage through the confirming clay layer. LYNX was also used to compute volumes of contaminated soil to aid in remediation cost analysis. Preliminary figures indicate about 60,000 yards[sup 3] of contaminated soil. Since the contamination is primarily confined to relatively impermeable clayey soils, site remediation will likely be ex-situ land farming.« less

Aerodynamics and Aeroacoustics of Rotorcraft (l’ Aerodynamique et l’ aeroacoustique des aeronefs a voilure tournante).

DTIC Science & Technology

1995-08-01

R.T.N. Chen: A survey of nonuniform 22) R.Houwink, A.E.P.Veldman: steady and inflow models for rotorcraft flight unsteady separated flow computations for...grid with con- see [17]). Because of the cylindrical nature of the stant grid sizes. If an arbitrary nonuniform grid is flow of a hovering rotor an O-H...research distributed around the blade section (figure 4) within a lairing at DRA Bedford on the DRA’s Aeromechanics Lynx Control which extends from 80

Rotorcraft Design

DTIC Science & Technology

1978-01-01

MOMENT GROWTH BV %tV • REDUCE BLADr. BENDING MOMENTS B’< 17* HUB VIBRATORV FORCES • REDUCE VIBRATORV LOADSBV W FLIGHTWOR THINE SS • FAIL SAM...standardization in future military helicopter development. 2.4 SOME TECHNICAL ASPECTS OF MILITARY HELICOPTER DEVELOPMENT ^- Ss In recent years, the...8217 - fT • SS 1 H Fig.2 The Lynx HAS MK 2 Fig.3 The Gazelle — — " - Fig.4 Wessex MK 2 Fig. 5 The Puma MteMA

First Student Project at the University of Tennessee at Martin Observatory

NASA Astrophysics Data System (ADS)

Crews, Lionel J.; Turner, K.; Wesner, P.

2011-05-01

The University of Tennessee at Martin has recently completed the construction and setup of an observatory. The dome houses a 16" Meade telescope with SBIG STL-11000M CCD. For its first project, observations of the Delta Scuti type variable SZ Lynx were taken in March and analyzed using MiraPRO. A simple ephemeris calculation was done, and compared to previous results. This project was done under the University Scholars program, a four year scholarship program which includes a faculty-mentored research project.

Drought variability and change across the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Coll, Joan Ramon; Aguilar, Enric

2015-04-01

Drought variability and change is assessed in this study across the Iberian Peninsula along the 20th century and the first decade of the 21st century using state of the art drought indices: the Sc-PDSI, the SPI and the SPEI. Daily temperature and precipitation data from 24 time-series regularly spread over Iberian Peninsula are quality controlled and also homogenized in a monthly scale to create the Monthly Iberian Temperature and Precipitation Series (MITPS) for the period 1906-2010. The Sc-PDSI, the 12-month SPI and 12-month SPEI are computed on a monthly basis using the newly MITPS dataset to identify dry and wet conditions across time. Precipitation data is only required to compute SPI, but potential evapotranspiration (PET) is also needed to perform the Sc-PDSI and SPEI, which is estimated using the Tornthwaite's method. The analysis conducted in this study confirms that drought conditions are worsening for most of the Iberian Peninsula across time strongly induced by global warming especially during the last three decades. All drought indices have found a drying trend in the Pyrenees, Ebro basin, central Iberia and in the south and south-eastern area while a wetting trend is identified in the western and in the north-western region. Future projections also indicate a clear increase in hydrological drought conditions along the 21st century, thus, water saving and the application of effective water management strategies will be crucial to minimize the impact of hydrological droughts over the Iberian Peninsula into the near future. KEY WORDS: Drought, climate change, Iberian Peninsula, drought indices.

Drought variability and change across the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Coll, J. R.; Aguilar, E.; Ashcroft, L.

2017-11-01

Drought variability and change was assessed across the Iberian Peninsula over more than 100 years expanding through the twentieth century and the first decade of the twenty-first century. Daily temperature and precipitation data from 24 Iberian time series were quality controlled and homogenized to create the Monthly Iberian Temperature and Precipitation Series (MITPS) for the period 1906-2010. The Standardized Precipitation Index (SPI), driven only by precipitation, and the Standardized Precipitation Evapotranspiration Index (SPEI), based on the difference between the precipitation and the reference evapotranspiration (ET0), were computed at annual and seasonal scale to describe the evolution of droughts across time. The results confirmed that a clear temperature increase has occurred over the entire Iberian Peninsula at the annual and seasonal scale, but no significant changes in precipitation accumulated amounts were found. Similar drought variability was provided by the SPI and SPEI, although the SPEI showed greater drought severity and larger surface area affected by drought than SPI from 1980s to 2010 due to the increase in atmospheric evaporative demand caused by increased temperatures. Moreover, a clear drying trend was found by the SPEI for most of the Iberian Peninsula at annual scale and also for spring and summer, although the SPI did not experience significant changes in drought conditions. From the drying trend identified for most of the Iberian Peninsula along the twentieth century, an increase in drought conditions can also be expected for this region in the twenty-first century according to future climate change projections and scenarios.

Bobcats (Lynx rufus) are natural definitive host of Besnoitia darlingi

USDA-ARS?s Scientific Manuscript database

Bovine besnoitiosis, caused by Besnoitia besnoiti, is an economically important disease of cattle in many countries but its transmission remains a mystery. Wild felids are suspected to be its definitive hosts. The domestic cat (Felis catus) is known experimental definitive host for Besnoitia species...

Mitochondrial haplotype variation and phylogeography of Iberian brown trout populations.

PubMed

MacHordom, A; Suárez, J; Almodóvar, A; Bautista, J M

2000-09-01

The biogeographical distribution of brown trout mitochondrial DNA haplotypes throughout the Iberian Peninsula was established by polymerase chain reaction-restriction fragment polymorphism analysis. The study of 507 specimens from 58 localities representing eight widely separated Atlantic-slope (north and west Iberian coasts) and six Mediterranean drainage systems served to identify five main groups of mitochondrial haplotypes: (i) haplotypes corresponding to non-native, hatchery-reared brown trout that were widely distributed but also found in wild populations of northern Spain (Cantabrian slope); (ii) a widespread Atlantic haplotype group; (iii) a haplotype restricted to the Duero Basin; (iv) a haplotype shown by southern Iberian populations; and (v) a Mediterranean haplotype. The Iberian distribution of these haplotypes reflects both the current fishery management policy of introducing non-native brown trout, and Messinian palaeobiogeography. Our findings complement and extend previous allozyme studies on Iberian brown trout and improve present knowledge of glacial refugia and postglacial movement of brown trout lineages.

Erosion / Corrosion Resistant Coatings for Compressor Airfoils

DTIC Science & Technology

2012-08-29

Platforms in Evaluation / Qualification T56 for C-130 AE1107 for V-22 T700 for H-60 T55 for MH-47 GE38 for H-53K Gem for Lynx T58 for H-46... T56 Performance Summary Uncoated vs Coated Engine Uncoated Engine (April – May 2011) With “sand turbine” at San Antonio: Coated Engine (July...power retention 2-3% Corrected Fuel Flow 1-2% Specific Fuel Consumption decrease @ 95% shp Coated Engine T56 Sand Ingestion Test 10 Pressure

Evaluating the operations capability of Freedom's Data Management System

NASA Technical Reports Server (NTRS)

Sowizral, Henry A.

1990-01-01

Three areas of Data Management System (DMS) performance are examined: raw processor speed, the subjective speed of the Lynx OS X-Window system, and the operational capacity of the Runtime Object Database (RODB). It is concluded that the proposed processor will operate at its specified rate of speed and that the X-Window system operates within users' subjective needs. It is also concluded that the RODB cannot provide the required level of service, even with a two-order of magnitude (100 fold) improvement in speed.

Theorizing Iberian Studies

ERIC Educational Resources Information Center

Newcomb, Robert Patrick

2015-01-01

A growing number of scholars invested in Iberian Studies are asking how peninsular literary and cultural studies might be reimagined, and reinvigorated, by placing the Spanish and Portuguese canons into critical dialogue with each other, and with Galician, Catalan, Basque/Euskadi, and Latin American and North African immigrant writers, cultural…

Design exploration and verification platform, based on high-level modeling and FPGA prototyping, for fast and flexible digital communication in physics experiments

NASA Astrophysics Data System (ADS)

Magazzù, G.; Borgese, G.; Costantino, N.; Fanucci, L.; Incandela, J.; Saponara, S.

2013-02-01

In many research fields as high energy physics (HEP), astrophysics, nuclear medicine or space engineering with harsh operating conditions, the use of fast and flexible digital communication protocols is becoming more and more important. The possibility to have a smart and tested top-down design flow for the design of a new protocol for control/readout of front-end electronics is very useful. To this aim, and to reduce development time, costs and risks, this paper describes an innovative design/verification flow applied as example case study to a new communication protocol called FF-LYNX. After the description of the main FF-LYNX features, the paper presents: the definition of a parametric SystemC-based Integrated Simulation Environment (ISE) for high-level protocol definition and validation; the set up of figure of merits to drive the design space exploration; the use of ISE for early analysis of the achievable performances when adopting the new communication protocol and its interfaces for a new (or upgraded) physics experiment; the design of VHDL IP cores for the TX and RX protocol interfaces; their implementation on a FPGA-based emulator for functional verification and finally the modification of the FPGA-based emulator for testing the ASIC chipset which implements the rad-tolerant protocol interfaces. For every step, significant results will be shown to underline the usefulness of this design and verification approach that can be applied to any new digital protocol development for smart detectors in physics experiments.

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

PubMed

Baranova, Maria A; Logacheva, Maria D; Penin, Aleksey A; Seplyarskiy, Vladimir B; Safonova, Yana Y; Naumenko, Sergey A; Klepikova, Anna V; Gerasimov, Evgeny S; Bazykin, Georgii A; James, Timothy Y; Kondrashov, Alexey S

2015-10-01

Populations of different species vary in the amounts of genetic diversity they possess. Nucleotide diversity π, the fraction of nucleotides that are different between two randomly chosen genotypes, has been known to range in eukaryotes between 0.0001 in Lynx lynx and 0.16 in Caenorhabditis brenneri. Here, we report the results of a comparative analysis of 24 haploid genotypes (12 from the United States and 12 from European Russia) of a split-gill fungus Schizophyllum commune. The diversity at synonymous sites is 0.20 in the American population of S. commune and 0.13 in the Russian population. This exceptionally high level of nucleotide diversity also leads to extreme amino acid diversity of protein-coding genes. Using whole-genome resequencing of 2 parental and 17 offspring haploid genotypes, we estimate that the mutation rate in S. commune is high, at 2.0 × 10(-8) (95% CI: 1.1 × 10(-8) to 4.1 × 10(-8)) per nucleotide per generation. Therefore, the high diversity of S. commune is primarily determined by its elevated mutation rate, although high effective population size likely also plays a role. Small genome size, ease of cultivation and completion of the life cycle in the laboratory, free-living haploid life stages and exceptionally high variability of S. commune make it a promising model organism for population, quantitative, and evolutionary genetics. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Structural equation modeling for observational studies

USGS Publications Warehouse

Grace, J.B.

2008-01-01

Structural equation modeling (SEM) represents a framework for developing and evaluating complex hypotheses about systems. This method of data analysis differs from conventional univariate and multivariate approaches familiar to most biologists in several ways. First, SEMs are multiequational and capable of representing a wide array of complex hypotheses about how system components interrelate. Second, models are typically developed based on theoretical knowledge and designed to represent competing hypotheses about the processes responsible for data structure. Third, SEM is conceptually based on the analysis of covariance relations. Most commonly, solutions are obtained using maximum-likelihood solution procedures, although a variety of solution procedures are used, including Bayesian estimation. Numerous extensions give SEM a very high degree of flexibility in dealing with nonnormal data, categorical responses, latent variables, hierarchical structure, multigroup comparisons, nonlinearities, and other complicating factors. Structural equation modeling allows researchers to address a variety of questions about systems, such as how different processes work in concert, how the influences of perturbations cascade through systems, and about the relative importance of different influences. I present 2 example applications of SEM, one involving interactions among lynx (Lynx pardinus), mongooses (Herpestes ichneumon), and rabbits (Oryctolagus cuniculus), and the second involving anuran species richness. Many wildlife ecologists may find SEM useful for understanding how populations function within their environments. Along with the capability of the methodology comes a need for care in the proper application of SEM.

[New evidence for the spread of Thelazia callipaeda in the Far East].

PubMed

Khrustalev, A V; Shaĭtanov, M V; Seredkin, I V

2015-01-01

Thelazia callipaeda nematodes parasitize in the eyes of domestic and wild carnivorous mammals (more often in Canidae). Numerous cases of human infestation are also known. The nematode spreads in South and East Asia although in the last decade this has been reported from dogs, cats and wolves in South and Central Europe as well. In the Russian Federation, T. callipaeda was earlier observed in dogs, cats, foxes and raccoon dogs in some regions of the Russian Far East. Two cases of human infestation were also reported. There has been no evidence of T. callipaeda in Russia in the past 50 years. Postmortem parasitological surveys of various wild carnivores were performed in the Primorsky Territory of Russia in the winter of 2012 to the summer of 2014. Conjunctival sac including the space under the nictitating membrane was sought for nematodes. T. callipaeda was detected in 28 sables of the 492 examined ones, in 5 out of the 11 raccoon dogs, in 2 out of the 3 foxes, and in one lynx. The examination of 25 kolinskies, 4 American minks, 3 Amur leopard cats, 2 yellow-throated martens and one badger provided negative results. The sable and the wild lynx are firstly reported as hosts of T. callipaeda. The findings suggest that there is a persisting natural reservoir of zoonotic thelaziosis in the Russian Far East. The epidemiological importance of this fact should not be underestimated.

A Framework for Quantitative Assessment of Impacts Related to Energy and Mineral Resource Development

DOE PAGES

Haines, Seth S.; Diffendorfer, Jay E.; Balistrieri, Laurie; ...

2013-05-15

Natural resource planning at all scales demands methods for assessing the impacts of resource development and use, and in particular it requires standardized methods that yield robust and unbiased results. Building from existing probabilistic methods for assessing the volumes of energy and mineral resources, we provide an algorithm for consistent, reproducible, quantitative assessment of resource development impacts. The approach combines probabilistic input data with Monte Carlo statistical methods to determine probabilistic outputs that convey the uncertainties inherent in the data. For example, one can utilize our algorithm to combine data from a natural gas resource assessment with maps of sagemore » grouse leks and pinon-juniper woodlands in the same area to estimate possible future habitat impacts due to possible future gas development. As another example: one could combine geochemical data and maps of lynx habitat with data from a mineral deposit assessment in the same area to determine possible future mining impacts on water resources and lynx habitat. The approach can be applied to a broad range of positive and negative resource development impacts, such as water quantity or quality, economic benefits, or air quality, limited only by the availability of necessary input data and quantified relationships among geologic resources, development alternatives, and impacts. In conclusion, the framework enables quantitative evaluation of the trade-offs inherent in resource management decision-making, including cumulative impacts, to address societal concerns and policy aspects of resource development.« less

A framework for quantitative assessment of impacts related to energy and mineral resource development

USGS Publications Warehouse

Haines, Seth S.; Diffendorfer, James; Balistrieri, Laurie S.; Berger, Byron R.; Cook, Troy A.; Gautier, Donald L.; Gallegos, Tanya J.; Gerritsen, Margot; Graffy, Elisabeth; Hawkins, Sarah; Johnson, Kathleen; Macknick, Jordan; McMahon, Peter; Modde, Tim; Pierce, Brenda; Schuenemeyer, John H.; Semmens, Darius; Simon, Benjamin; Taylor, Jason; Walton-Day, Katherine

2013-01-01

Natural resource planning at all scales demands methods for assessing the impacts of resource development and use, and in particular it requires standardized methods that yield robust and unbiased results. Building from existing probabilistic methods for assessing the volumes of energy and mineral resources, we provide an algorithm for consistent, reproducible, quantitative assessment of resource development impacts. The approach combines probabilistic input data with Monte Carlo statistical methods to determine probabilistic outputs that convey the uncertainties inherent in the data. For example, one can utilize our algorithm to combine data from a natural gas resource assessment with maps of sage grouse leks and piñon-juniper woodlands in the same area to estimate possible future habitat impacts due to possible future gas development. As another example: one could combine geochemical data and maps of lynx habitat with data from a mineral deposit assessment in the same area to determine possible future mining impacts on water resources and lynx habitat. The approach can be applied to a broad range of positive and negative resource development impacts, such as water quantity or quality, economic benefits, or air quality, limited only by the availability of necessary input data and quantified relationships among geologic resources, development alternatives, and impacts. The framework enables quantitative evaluation of the trade-offs inherent in resource management decision-making, including cumulative impacts, to address societal concerns and policy aspects of resource development.

Immunogenetic and population genetic analyses of Iberian cattle.

PubMed

Kidd, K K; Stone, W H; Crimella, C; Carenzi, C; Casati, M; Rognoni, G

1980-01-01

Blood samples were collected from more than 100 animals in each of 2 Spanish cattle breeds (Retinto and De Lidia), 2 Portuguese breeds (Alentejana and Mertolenga), and American Longhorn cattle. All samples for the 4 Iberian breeds were tested for 20 polymorphic systems; American Longhorn were tested for 19 of the 20. For each breed an average inbreeding coefficient was estimated by a comparison of the observed and expected heterozygosity at 7 or 8 codominant systems tested. All breeds had positive values but only 3 breeds had estimates of inbreeding that were statistically significantly different from 0: De Lidia with f = 0.17, Retinto with f = 0.08 and Mertolenga with f = 0.05. The De Lidia breed especially may be suffering from inbreeding depression since this high value is greater than expected if all of the animals were progeny of half-sib matings. Genetic distances were calculated from the gene frequency data on these 5 breeds plus 9 other European breeds. Analyses of these distances show a closely related group of the 4 Iberian breeds and American Longhorn, confirming the close relationships among the Iberian breeds and the Iberian, probably Portuguese, origin of American Longhorn cattle.

Test plan for performance testing of the Eaton AC-3 electric vehicle

NASA Astrophysics Data System (ADS)

Crumley, R.; Heiselmann, H. W.

1985-04-01

An alternating current (ac) propulsion system for an electric vehicle was developed and tested. The test bed vehicle is a modified 1981 Mercury Lynx. The test plan was prepared specifically for the third modification to this test bed and identified as the Eaton AC-3. The scope of the testing done on the Eaton AC-3 includes coastdown and dynamometer tests but does not include environmental, on-road, or track testing. Coastdown testing is performed in accordance with SAE J-1263 (SAE Recommended Practice for Road Load Measurement and Dynamometer Simulation Using Coastdown Techniques).

The Carnegie Mellon University Insert Project

DTIC Science & Technology

1997-02-01

Real - Time Systems (INSERT) project under the DARPA Evolutionary Design for Complex Software (EDCS) Program. The INSERT team has completed an initial API definition and ported the existing real-time publication subscription group communication software to LynxOS 2.4, a POSIX.1b compliant OS. The distributed real-time publisher/subscriber communication model is now supported by a processor membership protocol which allows a node in the system to fail, or to rejoin the system later. When a node fails, all the publishers and subscribers on that node have to be

Air National Guard Remotely Piloted Aircraft and Domestic Missions: Opportunities and Challenges

DTIC Science & Technology

2015-01-01

a sense of urgency in requiring that the FAA produce a plan to accelerate the integration of commercial and government RPAs into the NAS and publish...J. Stence, and M. Woodring, “Lynx: A High-Resolution Synthetic Aperture Radar,” SPIE Aero- sense , Vol. 3704, 1999, pp. 2–4. 5 Tsunoda et al., 1999...accompany H.R. 658, FAA Modernization and Reform Act of 2012, 2012, pp. 195–197. 14 These sites were in addition to DoD’s Sense and Avoid test sites

VMEbus based computer and real-time UNIX as infrastructure of DAQ

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yasu, Y.; Fujii, H.; Nomachi, M.

1994-12-31

This paper describes what the authors have constructed as the infrastructure of data acquisition system (DAQ). The paper reports recent developments concerned with HP VME board computer with LynxOS (HP742rt/HP-RT) and Alpha/OSF1 with VMEbus adapter. The paper also reports current status of developing a Benchmark Suite for Data Acquisition (DAQBENCH) for measuring not only the performance of VME/CAMAC access but also that of the context switching, the inter-process communications and so on, for various computers including Workstation-based systems and VME board computers.

Bobcat attack on a cottontail rabbit

USGS Publications Warehouse

Biggins, D.E.; Biggins, D.M.

2006-01-01

We observed an attack by a bobcat (Lynx rufus) on a cottontail rabbit (Sylvilagus) that involved stealthy approach by the cat for >1 h, followed by a 12.3-s chase covering 116.0 m for the cat and 128.4 m for the rabbit. During the chase, the route of the cat from starting point to kill site was more direct than the semi-circular route of the rabbit. Stride lengths for the cat and total distance covered by the chase were longer than those previously reported for bobcats.

Characterization of the Iberian Y chromosome haplogroup R-DF27 in Northern Spain.

PubMed

Villaescusa, Patricia; Illescas, María José; Valverde, Laura; Baeta, Miriam; Nuñez, Carolina; Martínez-Jarreta, Begoña; Zarrabeitia, Maria Teresa; Calafell, Francesc; de Pancorbo, Marian M

2017-03-01

The European paternal lineage R-DF27 has been proposed as a haplogroup of Iberian origin due to its maximum frequencies in the Iberian Peninsula. In this study, the distribution and structure of DF27 were characterized in 591 unrelated male individuals from four key populations of the north area of the Iberian Peninsula through the analysis of 12 Y-SNPs that define DF27 main sublineages. Additionally, Y-SNP allele frequencies were also gathered from the reference populations in the 1000 Genomes Project to compare and obtain a better landscape of the distribution of DF27. Our results reveal frequencies over 35% of DF27 haplogroup in the four North Iberian populations analyzed and high frequencies for its subhaplogroups. Considering the low frequency of DF27 and its sublineages in most populations outside of the Iberian Peninsula, this haplogroup seems to have geographical significance; thus, indicating a possible Iberian patrilineal origin of vestiges bearing this haplogroup. The dataset presented here contributes with new data to better understand the complex genetic variability of the Y chromosome in the Iberian Peninsula, that can be applied in Forensic Genetics. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Use of somatic cell banks in the conservation of wild felids.

PubMed

Praxedes, Érika A; Borges, Alana A; Santos, Maria V O; Pereira, Alexsandra F

2018-05-03

The conservation of biological resources is an interesting strategy for the maintenance of biodiversity, especially for wild felids who are constantly threatened with extinction. For this purpose, cryopreservation techniques have been used for the long-term storage of gametes, embryos, gonadal tissues, and somatic cells and tissues. The establishment of these banks has been suggested as a practical approach to the preservation of species and, when done in tandem with assisted reproductive techniques, could provide the means for reproducing endangered species. Somatic cell banks have been shown remarkable for the conservation of genetic material of felids; by merely obtaining skin samples, it is possible to sample a large group of individuals without being limited by factors such as gender or age. Thus, techniques for somatic tissue recovery, cryopreservation, and in vitro culture of different wild felids have been developed, resulting in a viable method for the conservation of species. One of the most notable conservation programs for wild felines using somatic samples was the one carried out for the Iberian lynx, the most endangered feline in the world. Other wild felids have also been studied in other continents, such as the jaguar in South America. This review aims to present the technical progress achieved in the conservation of somatic cells and tissues in different wild felids, as well address the progress that has been achieved in a few species. © 2018 Wiley Periodicals, Inc.

Seroprevalence of Toxoplasma gondii in Iberian pig sows.

PubMed

Pablos-Tanarro, Alba; Ortega-Mora, Luis Miguel; Palomo, Antonio; Casasola, Francisco; Ferre, Ignacio

2018-05-01

The objective of the present study was to investigate the seroprevalence of Toxoplasma gondii infection in Iberian sows reared in extensive and intensive management conditions and to compare two serologic techniques used for diagnosis. In addition, some possible risk factors associated with the presence of serum antibodies to T. gondii were also studied. Serum samples were collected from 2492 Iberian sows on 14 pig farms. Three types of management systems were included, traditional extensive outdoor farms (five farms), intensive farms with outdoor access (n = 4), and conventional intensive indoor farms (n = 5). The presence of serum antibodies to T. gondii was evaluated by two commercially available tests: an indirect enzyme-linked immunosorbent assay (ELISA) and a direct agglutination test (DAT). Serum antibodies against T. gondii were detected in 237 sows (9.5%) by at least one of the techniques used. The mean seroprevalence of toxoplasmosis in Iberian sows was 5.8% by ELISA and 8.9% by DAT. An agreement kappa-value of 0.68 (95%, CI = 0.63-0.74) was found between both tests. The results from this study suggest that the prevalence of T. gondii antibodies among Iberian sows seems to be moderate-low. The presence of serum antibodies against T. gondii in Iberian sows was associated to an extensive management system and low-level facilities of the farm, sow number (> 1000 animals), presence of cats, absence of rodent control and bird-proof nets in windows, well-water source, feed sources and storage (from the same farm and not stored in silo), absence of fences, and low farm worker qualification.

Ancient origin of endemic Iberian earth-boring dung beetles (Geotrupidae).

PubMed

Cunha, Regina L; Verdú, José R; Lobo, Jorge M; Zardoya, Rafael

2011-06-01

The earth-boring dung beetles belong to the family Geotrupidae that includes more than 350 species classified into three subfamilies Geotrupinae, Lethrinae, and Taurocerastinae, mainly distributed across temperate regions. Phylogenetic relationships within the family are based exclusively on morphology and remain controversial. In the Iberian Peninsula there are 33 species, 20 of them endemic, which suggests that these lineages might have experienced a radiation event. The evolution of morphological adaptations to the Iberian semi-arid environments such as the loss of wings (apterism) or the ability to exploit alternative food resources is thought to have promoted diversification. Here, we present a phylogenetic analysis of 31 species of Geotrupidae, 17 endemic to the Iberian Peninsula, and the remaining from southeastern Europe, Morocco, and Austral South America based on partial mitochondrial and nuclear gene sequence data. The reconstructed maximum likelihood and Bayesian inference phylogenies recovered Geotrupinae and Lethrinae as sister groups to the exclusion of Taurocerastinae. Monophyly of the analyzed geotrupid genera was supported but phylogenetic relationships among genera were poorly resolved. Ancestral character-state reconstruction of wing loss evolution, dating, and diversification tests altogether showed neither evidence of a burst of cladogenesis of the Iberian Peninsula group nor an association between apterism and higher diversification rates. Loss of flight did not accelerate speciation rates but it was likely responsible for the high levels of endemism of Iberian geotrupids by preventing their expansion to central Europe. These Iberian flightless beetle lineages are probably paleoendemics that have survived since the Tertiary in this refuge area during Plio-Pleistocene climatic fluctuations by evolving adaptations to arid and semi-arid environments. Copyright © 2011 Elsevier Inc. All rights reserved.

Southern dispersal and Palaeoecological implications of woolly rhinoceros ( Coelodonta antiquitatis): review of the Iberian occurrences

NASA Astrophysics Data System (ADS)

Álvarez-Lao, Diego J.; García, Nuria

2011-07-01

Cold-adapted large mammal populations spread southward during the coldest and driest phases of the Late Pleistocene reaching the Iberian Peninsula. Presence of woolly rhinoceros ( Coelodonta antiquitatis) can be identified from 23 Iberian sites, which is compiled and analyzed herein, and the fossil specimens from seven of these sites are described here for first time. Morphological and biometrical analyses demonstrate that the Iberian woolly rhinoceros did not significantly differ from individuals of other European populations, but represent the westernmost part of a continuous Eurasian belt of distribution. The first presence of woolly rhino in the Iberian Peninsula has been identified during the late Middle Pleistocene and early Late Pleistocene. However, the highest abundance of this species is recorded during MIS 3 and 2. The latest Iberian occurrences can be dated around 20 ka BP. The presence of woolly rhinoceros in the Iberian Peninsula correlates with periods of extreme dry and cold climatic conditions documented in Iberian terrestrial and marine sediment sequences. From a palaeobiogeographic point of view, the maximum southern spread of C. antiquitatis on the Iberian Peninsula was registered during the late Middle Pleistocene or early Late Pleistocene, reaching the latitude of Madrid (about 40°N). Subsequently, during MIS 3 and 2, all Iberian finds were restricted to the Northern regions of Iberia (Cantabrian area and Catalonia). The southern expansion of C. antiquitatis during the Late Pleistocene in the Iberian Peninsula reached similar latitudes to other Eurasian regions. The ecological composition of fossil assemblages with presence of woolly rhinoceros was statistically analyzed. Results show that temperate ungulate species are predominant at Iberian assemblages, resulting in a particular mixture of temperate and cold elements different of the typical Eurasian cold-adapted faunal associations. This particular situation suggests two possible

Enhanced understanding of predator-prey relationships using molecular methods to identify predator species, individual and sex.

PubMed

Mumma, Matthew A; Soulliere, Colleen E; Mahoney, Shane P; Waits, Lisette P

2014-01-01

Predator species identification is an important step in understanding predator-prey interactions, but predator identifications using kill site observations are often unreliable. We used molecular tools to analyse predator saliva, scat and hair from caribou calf kills in Newfoundland, Canada to identify the predator species, individual and sex. We sampled DNA from 32 carcasses using cotton swabs to collect predator saliva. We used fragment length analysis and sequencing of mitochondrial DNA to distinguish between coyote, black bear, Canada lynx and red fox and used nuclear DNA microsatellite analysis to identify individuals. We compared predator species detected using molecular tools to those assigned via field observations at each kill. We identified a predator species at 94% of carcasses using molecular methods, while observational methods assigned a predator species to 62.5% of kills. Molecular methods attributed 66.7% of kills to coyote and 33.3% to black bear, while observations assigned 40%, 45%, 10% and 5% to coyote, bear, lynx and fox, respectively. Individual identification was successful at 70% of kills where a predator species was identified. Only one individual was identified at each kill, but some individuals were found at multiple kills. Predator sex was predominantly male. We demonstrate the first large-scale evaluation of predator species, individual and sex identification using molecular techniques to extract DNA from swabs of wild prey carcasses. Our results indicate that kill site swabs (i) can be highly successful in identifying the predator species and individual responsible; and (ii) serve to inform and complement traditional methods. © 2013 John Wiley & Sons Ltd.

Citizen Science and Citizen Space Exploration: Potentials for Professional Collaboration

NASA Astrophysics Data System (ADS)

Wright, E.

2012-12-01

Citizens in Space is a project of the United States Rocket Academy, with the goal of promoting citizen science and citizen space exploration. This goal is enabled by the new reusable suborbital spacecraft now under development by multiple companies in the US. For the first phase of this project, we have acquired a contract for 10 flights on the Lynx suborbital spacecraft, which is under construction by XCOR Aerospace in Mojave, CA. This represents, to the best of our knowledge, the largest single bulk purchase of suborbital flights to date. Citizens in Space has published an open call for experiments to fly on these missions, which we expect will begin in late 2013 or early 2014. We will be selecting approx. 100 small experiments and 10 citizen astronauts to fly as payload operators. Although our primary goal is to encourage citizen science, these flight opportunities are also open to professional researchers who have payloads that meet our criteria. We believe that the best citizen-science projects are collaborations between professional and citizen scientists. We will discuss various ways in which professional scientists can collaborate with citizen scientists to take advantage of the flight opportunities provided by our program. We will discuss the capabilities of the Lynx vehicle, the 1u- and 2u-CubeSat form factor we are using for our payloads, and general considerations for payload integration. As an example of the payloads we can accommodate, we will discuss a NASA-inspired experiment to collect particles from the upper atmosphere.;

Evaluating noninvasive genetic sampling techniques to estimate large carnivore abundance.

PubMed

Mumma, Matthew A; Zieminski, Chris; Fuller, Todd K; Mahoney, Shane P; Waits, Lisette P

2015-09-01

Monitoring large carnivores is difficult because of intrinsically low densities and can be dangerous if physical capture is required. Noninvasive genetic sampling (NGS) is a safe and cost-effective alternative to physical capture. We evaluated the utility of two NGS methods (scat detection dogs and hair sampling) to obtain genetic samples for abundance estimation of coyotes, black bears and Canada lynx in three areas of Newfoundland, Canada. We calculated abundance estimates using program capwire, compared sampling costs, and the cost/sample for each method relative to species and study site, and performed simulations to determine the sampling intensity necessary to achieve abundance estimates with coefficients of variation (CV) of <10%. Scat sampling was effective for both coyotes and bears and hair snags effectively sampled bears in two of three study sites. Rub pads were ineffective in sampling coyotes and lynx. The precision of abundance estimates was dependent upon the number of captures/individual. Our simulations suggested that ~3.4 captures/individual will result in a < 10% CV for abundance estimates when populations are small (23-39), but fewer captures/individual may be sufficient for larger populations. We found scat sampling was more cost-effective for sampling multiple species, but suggest that hair sampling may be less expensive at study sites with limited road access for bears. Given the dependence of sampling scheme on species and study site, the optimal sampling scheme is likely to be study-specific warranting pilot studies in most circumstances. © 2015 John Wiley & Sons Ltd.

Seismic Reflection Transect across the Central Iberian Zone (Iberian Massif): The ALCUDIA project

NASA Astrophysics Data System (ADS)

Carbonell, R.; Simancas, F.; Martinez-Poyatos, D.; Ayarza, P.; Gonzalez, P.; Tejero, R.; Martín-Parra, L.; Matas, J.; Gonzalez-Lodeiro, F.; Pérez-Estaún, A.; García-Lobon, J.; Mansilla, L.; Palomeras, I.

2007-12-01

The lithosphere of the Central Iberian Zone (CIZ) differs from that of the southwestern Iberian Massif. They are limited by a suture zone. The seismic reflection profile IBERSEIS suggested that the activity of a Carboniferous mantle plume resulted in abundant intrusions of mafic magmas in the mid-to-lower crust which resulted in a singular crustal evolution. The current knowledge of the area based mostly in surface geological mapping suggests that basic magmatism continues further towards the north, indicating that the mantle plume may have affected a bigger area up to the Tajo depression. Furthermore, the existence of the Almadén mine, one of the largest mercury mine in the world within the CIZ, favour that the crust in this area is the result of anomalous lithospheric processes. Accordingly, the ALCUDIA project has been lauched aiming to study the structure and nature of the lithosphere of the CIZ. It includes the acquisition of a deep high resolution seismic reflection transect, detailed geological mapping, kinematic, petrologic and geochemical studies, and other geophysical studies (potential field methods). This new profile extends the previous IBERSEIS Transect towards the northeast, completing almost 600 km of deep seismic profiles, crossing the southern half of the Iberian Variscides. The transect crosses some important structures, such as the Toledo fault, Santa Elena Fault, Alcudia anticline, Almadén syncline, and some major magnetic anomalies. The preliminary results reveal that the crust is 30 km thick in average, with a horizontal Moho, a highly reflective mid-to-lower crust with a few mantle reflectors and well defined features in the upper crust with the indication of detachments zones that might link to the mid- crustal reflective zone.

Sensors Locate Radio Interference

NASA Technical Reports Server (NTRS)

2009-01-01

After receiving a NASA Small Business Innovation Research (SBIR) contract from Kennedy Space Center, Soneticom Inc., based in West Melbourne, Florida, created algorithms for time difference of arrival and radio interferometry, which it used in its Lynx Location System (LLS) to locate electromagnetic interference that can disrupt radio communications. Soneticom is collaborating with the Federal Aviation Administration (FAA) to install and test the LLS at its field test center in New Jersey in preparation for deploying the LLS at commercial airports. The software collects data from each sensor in order to compute the location of the interfering emitter.

KSC-2012-4572

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Lt. Gov. Jennifer Carroll R-Fla. addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4582

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, U.S. Sen. Bill Nelson D-Fla. addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4571

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Space Florida President Frank DiBello addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range.

PubMed

Waples, Robin S; Adams, Peter B; Bohnsack, James; Taylor, Barbara L

2007-08-01

patterns of distribution and abundance do not depart substantially from what would be expected at any point in time under natural conditions in a large metapopulation. The Canadian lynx (Lynx canadensis) is ESA listed in the contiguous United States, where it occurs in four geographic areas. Populations in one region, the Northern Rockies/Cascades, have always been the most important for long-term persistence of the species in the United States. Because the other regions never contained more than limited amounts of good-quality lynx habitat, those areas are not considered to represent a significant portion of the species' range.

Evolution and genome specialization of Brucella suis biovar 2 Iberian lineages.

PubMed

Ferreira, Ana Cristina; Tenreiro, Rogério; de Sá, Maria Inácia Corrêa; Dias, Ricardo

2017-09-12

Swine brucellosis caused by B. suis biovar 2 is an emergent disease in domestic pigs in Europe. The emergence of this pathogen has been linked to the increase of extensive pig farms and the high density of infected wild boars (Sus scrofa). In Portugal and Spain, the majority of strains share specific molecular characteristics, which allowed establishing an Iberian clonal lineage. However, several strains isolated from wild boars in the North-East region of Spain are similar to strains isolated in different Central European countries. Comparative analysis of five newly fully sequenced B. suis biovar 2 strains belonging to the main circulating clones in Iberian Peninsula, with publicly available Brucella spp. genomes, revealed that strains from Iberian clonal lineage share 74% similarity with those reference genomes. Besides the 210 kb translocation event present in all biovar 2 strains, an inversion with 944 kb was presented in chromosome I of strains from the Iberian clone. At left and right crossover points, the inversion disrupted a TRAP dicarboxylate transporter, DctM subunit, and an integral membrane protein TerC. The gene dctM is well conserved in Brucella spp. except in strains from the Iberian clonal lineage. Intraspecies comparative analysis also exposed a number of biovar-, haplotype- and strain-specific insertion-deletion (INDELs) events and single nucleotide polymorphisms (SNPs) that could explain differences in virulence and host specificities. Most discriminative mutations were associated to membrane related molecules (29%) and enzymes involved in catabolism processes (20%). Molecular identification of both B. suis biovar 2 clonal lineages could be easily achieved using the target-PCR procedures established in this work for the evaluated INDELs. Whole-genome analyses supports that the B. suis biovar 2 Iberian clonal lineage evolved from the Central-European lineage and suggests that the genomic specialization of this pathogen in the Iberian Peninsula

North Atlantic Oscillation influence on the stramflows of the Iberian Rivers

NASA Astrophysics Data System (ADS)

Lorenzo-Lacruz, J.; González-Hidalgo, J. C.; Vicente-Serrano, S. M.; López-Moreno, J. I.

2010-09-01

"NORTH ATLANTIC OSCILLATION INFLUENCE ON THE STREAMFLOWS OF THE IBERIAN RIVERS" LORENZO-LACRUZ, J. ¹, GONZÁLEZ-HIDALGO, J.C.², VICENTE-SERRANO, S.M. ¹, LÓPEZ-MORENO, J.I.¹ ¹Instituto Pirenaico de Ecología, CSIC (Spanish Research Council), Campus de Aula Dei, P.O. Box 202, Zaragoza 50080, Spain ²Departamento de Geografía, Universidad de Zaragoza, Zaragoza, Spain. We analyzed the North Atlantic Oscillation (NAO) influence on the monthly river discharges of Iberian rivers from 1945 to 2005. The study covers most of the Iberian river basins, using 187 monthly discharge series. The aim of this study is to determine the role of the variability of the NAO on the Iberian river discharges. Using the winter NAO we calculated correlations with the monthly river discharge series. We identified the positive and negative phases of the winter NAO for the period 1945-2006, and related to river discharge anomalies. Significant differences in river discharge were found between the positive and negative NAO phases with negative anomalies (dry conditions) during positive NAO periods, and positive anomalies (wet conditions) during negative NAO periods The results show a consistent and strong control of the river discharges by the winter NAO, but some spatial differences are shown, as three different domains were defined: a region under the direct influence of the NAO (central and western part of the Iberian Peninsula), a transition zone (Ebro Valley) and region free from that influence (Eastern part of the Iberian Peninsula). The spatial differences are also identified in the annual pattern of discharge anomalies. The basin characteristics, the location of the gauging stations and the human management are the possible drivers of these differences.

Gammaretrovirus-specific antibodies in free-ranging and captive Namibian cheetahs.

PubMed

Krengel, Annika; Cattori, Valentino; Meli, Marina L; Wachter, Bettina; Böni, Jürg; Bisset, Leslie R; Thalwitzer, Susanne; Melzheimer, Jörg; Jago, Mark; Hofmann-Lehmann, Regina; Hofer, Heribert; Lutz, Hans

2015-06-01

The cheetah population in Namibia is the largest free-ranging population in the world and a key population for research regarding the health status of this species. We used serological methods and quantitative real-time PCR to test free-ranging and captive Namibian cheetahs for the presence of feline leukemia virus (FeLV), a gammaretrovirus that can be highly aggressive in populations with low genetic diversity, such as cheetahs. We also assessed the presence of antibodies to other gammaretroviruses and the responses to a FeLV vaccine developed for domestic cats. Up to 19% of the free-ranging cheetahs, 27% of the captive nonvaccinated cheetahs, and 86% of the captive vaccinated cheetahs tested positive for FeLV antibodies. FeLV-antibody-positive free-ranging cheetahs also tested positive for Rauscher murine leukemia virus antibodies. Nevertheless, FeLV was not detectable by quantitative real-time PCR and no reverse transcriptase activity was detectable by product-enhanced reverse transcriptase assay in the plasma of cheetahs or the supernatants from cultures of peripheral blood mononuclear cells. The presence of antibodies to gammaretroviruses in clinically healthy specimens may be caused either by infection with a low-pathogenic retrovirus or by the expression of endogenous retroviral sequences. The strong humoral immune responses to FeLV vaccination demonstrate that cheetahs can respond to the vaccine and that vaccination against FeLV infection may be beneficial should FeLV infection ever become a threat, as was seen in Iberian lynx and Florida panthers. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Gammaretrovirus-Specific Antibodies in Free-Ranging and Captive Namibian Cheetahs

PubMed Central

Krengel, Annika; Cattori, Valentino; Meli, Marina L.; Wachter, Bettina; Böni, Jürg; Bisset, Leslie R.; Thalwitzer, Susanne; Melzheimer, Jörg; Jago, Mark; Hofmann-Lehmann, Regina; Hofer, Heribert

2015-01-01

The cheetah population in Namibia is the largest free-ranging population in the world and a key population for research regarding the health status of this species. We used serological methods and quantitative real-time PCR to test free-ranging and captive Namibian cheetahs for the presence of feline leukemia virus (FeLV), a gammaretrovirus that can be highly aggressive in populations with low genetic diversity, such as cheetahs. We also assessed the presence of antibodies to other gammaretroviruses and the responses to a FeLV vaccine developed for domestic cats. Up to 19% of the free-ranging cheetahs, 27% of the captive nonvaccinated cheetahs, and 86% of the captive vaccinated cheetahs tested positive for FeLV antibodies. FeLV-antibody-positive free-ranging cheetahs also tested positive for Rauscher murine leukemia virus antibodies. Nevertheless, FeLV was not detectable by quantitative real-time PCR and no reverse transcriptase activity was detectable by product-enhanced reverse transcriptase assay in the plasma of cheetahs or the supernatants from cultures of peripheral blood mononuclear cells. The presence of antibodies to gammaretroviruses in clinically healthy specimens may be caused either by infection with a low-pathogenic retrovirus or by the expression of endogenous retroviral sequences. The strong humoral immune responses to FeLV vaccination demonstrate that cheetahs can respond to the vaccine and that vaccination against FeLV infection may be beneficial should FeLV infection ever become a threat, as was seen in Iberian lynx and Florida panthers. PMID:25809630

Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics.

PubMed

García-Garcerà, Marc; Gigli, Elena; Sanchez-Quinto, Federico; Ramirez, Oscar; Calafell, Francesc; Civit, Sergi; Lalueza-Fox, Carles

2011-01-01

Despite the successful retrieval of genomes from past remains, the prospects for human palaeogenomics remain unclear because of the difficulty of distinguishing contaminant from endogenous DNA sequences. Previous sequence data generated on high-throughput sequencing platforms indicate that fragmentation of ancient DNA sequences is a characteristic trait primarily arising due to depurination processes that create abasic sites leading to DNA breaks. METHODOLOGY/PRINCIPALS FINDINGS: To investigate whether this pattern is present in ancient remains from a temperate environment, we have 454-FLX pyrosequenced different samples dated between 5,500 and 49,000 years ago: a bone from an extinct goat (Myotragus balearicus) that was treated with a depurinating agent (bleach), an Iberian lynx bone not subjected to any treatment, a human Neolithic sample from Barcelona (Spain), and a Neandertal sample from the El Sidrón site (Asturias, Spain). The efficiency of retrieval of endogenous sequences is below 1% in all cases. We have used the non-human samples to identify human sequences (0.35 and 1.4%, respectively), that we positively know are contaminants. We observed that bleach treatment appears to create a depurination-associated fragmentation pattern in resulting contaminant sequences that is indistinguishable from previously described endogenous sequences. Furthermore, the nucleotide composition pattern observed in 5' and 3' ends of contaminant sequences is much more complex than the flat pattern previously described in some Neandertal contaminants. Although much research on samples with known contaminant histories is needed, our results suggest that endogenous and contaminant sequences cannot be distinguished by the fragmentation pattern alone.

SIFT-MS analysis of Iberian hams from pigs reared under different conditions.

PubMed

Carrapiso, Ana I; Noseda, Bert; García, Carmen; Reina, Raquel; Sánchez Del Pulgar, José; Devlieghere, Frank

2015-06-01

The aim of this study was to investigate the usefulness of a Selected Ion Flow Tube-Mass Spectrometry (SIFT-MS) equipment to tentatively quantify relevant volatile compounds of dry-cured Iberian ham, and to differentiate Iberian hams from pigs reared at four different conditions yielding different commercial grades. The SIFT-MS analysis allowed the rapid quantification of 39 Iberian ham volatile compounds, 16 of them being significantly affected by the rearing conditions of pigs. The full spectra SIFT-MS data allowed the correct classification of 79.2% of hams according to diet, which is a smaller percentage than that obtained using intramuscular fatty acid data (95.8%) obtained by using a gas chromatograph-flame ionization detector after lipid extraction and transesterification. Therefore, the SIFT-MS analysis would be a rapid tool to tentatively quantify some relevant volatile compounds, and also would provide a rapid but rough classification of Iberian ham according to the rearing conditions of pigs. Copyright © 2015 Elsevier Ltd. All rights reserved.

Sinks without borders: Snowshoe hare dynamics in a complex landscape

USGS Publications Warehouse

Griffin, Paul C.; Mills, L. Scott

2009-01-01

A full understanding of population dynamics of wide-ranging animals should account for the effects that movement and habitat use have on individual contributions to population growth or decline. Quantifying the per-capita, habitat-specific contribution to population growth can clarify the value of different patch types, and help to differentiate population sources from population sinks. Snowshoe hares, Lepus americanus, routinely use various habitat types in the landscapes they inhabit in the contiguous US, where managing forests for high snowshoe hare density is a priority for conservation of Canada lynx, Lynx canadensis. We estimated density and demographic rates via mark–recapture live trapping and radio-telemetry within four forest stand structure (FSS) types at three study areas within heterogeneous managed forests in western Montana. We found support for known fate survival models with time-varying individual covariates representing the proportion of locations in each of the FSS types, with survival rates decreasing as use of open young and open mature FSS types increased. The per-capita contribution to overall population growth increased with use of the dense mature or dense young FSS types and decreased with use of the open young or open mature FSS types, and relatively high levels of immigration appear to be necessary to sustain hares in the open FSS types. Our results support a conceptual model for snowshoe hares in the southern range in which sink habitats (open areas) prevent the buildup of high hare densities. More broadly, we use this system to develop a novel approach to quantify demographic sources and sinks for animals making routine movements through complex fragmented landscapes.

Clusters of Earthquakes In The Southern of Iberian Peninsula

NASA Astrophysics Data System (ADS)

Posadas, A. M.; Luzón, F.; Vidal, F.

The southern part of the Iberian Peninsula forms part of the western border of Eurasia- Africa plate boundary. This area is characterized by the occurrence of earthquakes of moderate magnitude (the maximum magnitude ranging from 4.5 to 5.5). From the point of view of seismic activity, this region is the most active one in he Iberian Penin- sula. Until earlier 80, only the National Seismic Network belonging to the National Geographic Institute monitores the activity in the south of Iberian Peninsula. From 1983 to the actuality, the Andalusian Seismic Network belonging to the Andalusian Geophysics Institute and Seismic Disaster Prevention, records the microseismicity of the area. Nowadays, the earthquakes catalogue used belongs to the Andalusian Insti- tute of Geophysics and Seismic Disaster Prevention and it counts on more than 20000 events registered from 1985 to 2001. Today, after 20 years of recording seismic ac- tivity, statistics analysis of the catalogue have sense. In this paper we present a first approach to the clustering properties of the seismicity in the south of the Iberian Penin- sula. The analysis carried out starts with the study of clustering properties (temporal and spatial properties) in the Southern of Iberian Peninsula seismicity to demonstrate, by using the Fractal Dimension of the temporal earthquake distribution and the Mor- ishita Index of the spatial distribution of earthquakes, that this seismicity is charac- terized by a tendency to form earthquake clusters, both spatial and temporal clusters. As an example, five seismogenetic areas of the zone are analyzed (Adra-Berja, Agron, Alboran, Antequera and Loja). This particular study of the series find out the b param- eter from the Gutenberg-Richter's Law (which characterizes the energetic relaxation of events), the p parameter from Omori's Law (that characterizes the temporal relax- ation of aftershocks) and the Fractal Dimension of the spatial distribution of earth- quakes (to find the

Diptera of forensic importance in the Iberian Peninsula: larval identification key.

PubMed

Velásquez, Y; Magaña, C; Martínez-Sánchez, A; Rojo, S

2010-09-01

A revision of the species and families of sarcosaprophagous flies (Diptera: Calliphoridae, Sarcophagidae, Muscidae, Fanniidae, Drosophilidae, Phoridae, Piophilidae and Stratiomyidae) suitable for forensic purposes in the Iberian Peninsula is presented. Morphological characteristics that allow the accurate identification of third instars of the species present in the Iberian Peninsula are described and presented in the form of a diagnostic key. For larval Calliphoridae, characteristics such as the spines of the body segments were useful for the genus Calliphora whereas features of the anal segment and the cephalopharyngeal skeleton were useful for larvae of Lucilia. Identification of three Chrysominae species present in the Iberian Peninsula is included. For larval Sarcophagidae, characters such as the arrangement and shape of spiracular openings, structures of the anal segment and the cephalopharyngeal skeleton were used for the first time. A new record of Sarcophaga cultellata Pandellé, from a human corpse, is also included as well as recent incursions into the European cadaveric entomofauna such as Synthesiomyia nudiseta (van der Wulp) and Hermetia illucens (Linnaeus). This work provides useful new information that could be applied to forensic investigations in the Iberian Peninsula and in southern Europe.

Bobcat (Lynx rufus) as a new natural intermediate host for Sarcocystis neurona

USDA-ARS?s Scientific Manuscript database

The protozoan Sarcocystis neurona is an important cause of severe clinical disease of horses (called equine protozoal myeloencephalitis, EPM), marine mammals, companion animals, and several species of wildlife animals in the Americas. The Virginia opossum (Didelphis virginiana) is its definitive hos...

Reconnaissance of the water resources of the Lonesome Valley area, Yavapai County, Arizona

USGS Publications Warehouse

Metzger, Donald G.

1957-01-01

In accordance with a request from its cooperating agency, the Arizona State Land Department, the U.S. Geological Survey has made a brief reconnaissance of the water resources of the Lonesome Valley area, Yavapai County, Ariz., to determine the probable hydrologic effects of a proposed dam on Lynx Creek. The construction of this dam has been proposed by the Arizona Game and Fish Department, for recreational and fish-cultural purposes. Data on the geology of the area were furnished by Mrs. Medora M. Krieger, geologist, Geologic Division, U.S. Geological Survey, and the map was prepared by Floyd R. Twenter, geologist, Ground Water Branch.

KSC-2012-4579

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, NASA Chief of Staff David Radzanowski addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4578

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Space Florida President Frank DiBello joined other space executives and elected officials in addressing guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4580

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Bill Moore, chief operating officer of the Kennedy Space Center Visitor Complex, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4576

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR Chief Operating Officer Andrew Nelson addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4573

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Center Director Bob Cabana addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4581

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Todd Lindner, senior manager of Aviation Planning and Spaceport Development for the Jacksonville Aviation Authority, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4575

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR President Jeff Greason addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

The recent (upper Miocene to Quaternary) and present tectonic stress distributions in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Herraiz, M.; de Vicente, G.; Lindo-Ñaupari, R.; Giner, J.; Simón, J. L.; GonzáLez-Casado, J. M.; Vadillo, O.; RodríGuez-Pascua, M. A.; CicuéNdez, J. I.; Casas, A.; CabañAs, L.; Rincón, P.; CortéS, A. L.; RamíRez, M.; Lucini, M.

2000-08-01

A general synthesis of the recent and present stress situation and evolution in the Iberian Peninsula was obtained from microstructural and seismological analysis. The stress evolution was deduced from (1) fault population analysis (FPA) from 409 sites distributed throughout the Iberian Peninsula, (2) paleostress indicators given by 324 stations taken from the bibliography, and (3) seismic data corresponding to 161 focal mechanisms evenly spread in the studied region. The application of FPA together with the determination of stress tensors and focal mechanisms for the whole Iberian microplate has provided two main results: (1) the Iberian Peninsula is undergoing a NW-SE oriented compression, except for the northeastern part (Pyrenees, Ebro Basin, and Iberian Chain), where it is N-S to NE-SW, and the Gulf of Cádiz, where it seems to be E-W, and (2) the main trends of the stress field have remained almost constant since the upper Miocene. The analysis performed by zones suggests the presence of local heterogeneities in the stress field.

Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle

PubMed Central

Anderung, Cecilia; Bouwman, Abigail; Persson, Per; Carretero, José Miguel; Ortega, Ana Isabel; Elburg, Rengert; Smith, Colin; Arsuaga, Juan Luis; Ellegren, Hans; Götherström, Anders

2005-01-01

The geographic situation of the Iberian Peninsula makes it a natural link between Europe and North Africa. However, it is a matter of debate to what extent African influences via the Straits Gibraltar have affected Iberia's prehistoric development. Because early African pastoralist communities were dedicated to cattle breeding, a possible means to detect prehistoric African–Iberian contacts might be to analyze the origin of cattle breeds on the Iberian Peninsula. Some contemporary Iberian cattle breeds show a mtDNA haplotype, T1, that is characteristic to African breeds, generally explained as being the result of the Muslim expansion of the 8th century A.D., and of modern imports. To test a possible earlier African influence, we analyzed mtDNA of Bronze Age cattle from the Portalón cave at the Atapuerca site in northern Spain. Although the majority of samples showed the haplotype T3 that dominates among European breeds of today, the T1 haplotype was found in one specimen radiocarbon dated 1800 calibrated years B.C. Accepting T1 as being of African origin, this result indicates prehistoric African–Iberian contacts and lends support to archaeological finds linking early African and Iberian cultures. We also found a wild ox haplotype in the Iberian Bronze Age sample, reflecting local hybridization or backcrossing or that aurochs were hunted by these farming cultures. PMID:15941827

Test development and use in five Iberian Latin American countries.

PubMed

Wechsler, Solange M; Oakland, Thomas; León, Carmem; Vivas, Eleonora; de Almeida, Leandro; Franco, Amanda; Pérez-Solís, María; Contini, Norma

2014-08-01

The abundance of scholarship on test development and use generally is higher in English-speaking than in Iberian Latin American countries. The purpose of this article is to help overcome this imbalance by describing and identifying similarities and differences in test development and use in two Iberian (Portugal and Spain) and three of the largest Latin American (Argentina, Brazil, and Venezuela) countries. The stages of test development in each country, roles of professional associations, presence of standards for test use, professionals' educational training, commonly used tests, together with prominent challenges to continued progress are discussed. Test development and use in these five countries are transitioning from a dependence on the use of translated tests to greater reliance on adapted and finally nationally constructed tests. Continued growth requires adherence to international standards guiding test development and use. Stronger alliance among professional associations in the Iberian Latin American countries could serve as a catalyst to promote test development in these regions. © 2014 International Union of Psychological Science.

Stictonectes abellani sp. n. (Coleoptera: Dytiscidae: Hydroporinae) from the Iberian Peninsula, with notes on the phylogeny, ecology and distribution of the Iberian species of the genus.

PubMed

Millán, Andrés; Picazo, Félix; Fery, Hans; Moreno, José Luis; Sánchez-Fernández, David

2013-12-09

Stictonectes abellani sp. n. is described from the Iberian Peninsula. On average, the new species is larger and the colouration of the upper surface darker than in most other species of the genus. Seemingly the species has been confounded with others in the past, particularly S. optatus (Seidlitz, 1887). Males can be separated from externally similar species by studying the shape of the parameres. Additionally, the anterior margin of the clypeus is provided with a distinct rim in both sexes, which is absent or only weakly present in other species. The habitus and the male genitalia of the new species are illustrated, and compared with those of S. optatus. External morphological differences from other members of the genus are discussed. According to studies of the molecular phylogeny, based on fragments of four mitochondrial genes, S. abellani sp. n. is clearly separated from previously described species of Stictonectes Brinck, 1943, apparently being relatively basal within the genus. The new species is rather widely distributed in the south-western part of the Iberian Peninsula, inhabiting pools in small temporary siliceous streams. We provide distributional maps for all eight Iberian Stictonectes and estimate the potential distributional areas of the new species and the other two endemic Iberian species S. occidentalis Fresneda & Fery, 1990 and S. rebeccae Bilton, 2011, based on environmental niche modelling. 

Influence of pre-cure freezing of Iberian ham on proteolytic changes throughout the ripening process.

PubMed

Pérez-Palacios, Trinidad; Ruiz, Jorge; Barat, Jose Manuel; Aristoy, María Concepción; Antequera, Teresa

2010-05-01

This work aimed to investigate the effect of pre-cure freezing Iberian hams on proteolysis phenomena throughout the ripening process. Non-protein nitrogen (NPN), peptide nitrogen (PN) and amino acid nitrogen (AN) as well as amino acid and dipeptide evolution followed the same trend in both refrigerated (R) and pre-cure frozen (F) Iberian hams during processing. At the different stages of ripening, there were no differences in the content of NPN and AN while F dry-cured hams had higher levels of PN than R hams at the final step. This seemed to be more related to the salt content (lower in F than in R hams) than to the pre-cure freezing treatment. Most amino acids and dipeptides detected showed higher concentrations in F than in R Iberian hams at the green stage, being rather similar at the intermediate phases. At the final stage, the effects of pre-cure freezing of Iberian hams were not well defined, higher levels of some amino acids and dipeptides were found in R than in F Iberian hams whereas other amino acids were lower in R than in F hams. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Use of ultra-high-pressure liquid chromatography-quadrupole time-of-flight MS to discover the presence of pesticide metabolites in food samples.

PubMed

Hernández, Félix; Grimalt, Susana; Pozo, Oscar J; Sancho, Juan V

2009-07-01

In this paper we illustrate the use of two different methodologies to investigate the presence of pesticide metabolites in parent pesticide-positive food samples, using ultra-high-pressure liquid chromatography coupled to hybrid quadrupole time-of-flight (UHPLC-QTOF) mass spectrometry. First, a common fragmentation pathway between the parent pesticide and its metabolites has been considered to search for metabolites in two positive market samples (imazalil in lemon, chlorpyrifos in grape). Secondly, olive oil samples from field residue trials were used for automated application of comparative software (MetaboLynx), which was used with treated and untreated samples to search for expected and unexpected metabolites of phosmet. One of the main objectives when using these approaches was to avoid the tedious manual searching for potential metabolites within the huge amount of information contained in the total ion chromatogram acquired by TOF MS. The common fragmentation approach applied to TOF MS full-acquisition data, considering an enhanced fragmentation in the collision cell, has allowed the discovery of two metabolites of imazalil (1-[2-(2,4-dichlorophenyl)-2-hydroxyethyl]-1H-imidazole and 1-[2-(2,4-dichlorophenyl)-2-oxoethyl]-1H-imidazole) in a lemon positive sample, as well as another two metabolites of chlorpyrifos (chlorpyrifos-oxon and 3,5,6-trichloro-2-pyridinol) in a grape positive sample. Moreover, MetaboLynx application to TOF MS data, without promoting fragmentation, from treated and untreated olive oil samples has been helpful in detecting the metabolite phosmet-oxon. In both strategies, every metabolite detected by TOF MS was confirmed using QTOF and/or triple quadrupole instruments. Accurate masses given by TOF MS together with the valuable information on product ions given by QTOF MS/MS experiments were crucial for the unambiguous identification of metabolites.

Mammal responses to the human footprint vary across species and stressors.

PubMed

Toews, Mary; Juanes, Francis; Burton, A Cole

2018-07-01

A rapidly expanding human footprint - comprised of anthropogenic land-use change and infrastructure - is profoundly affecting wildlife distributions worldwide. Cumulative effects management (CEM) is a regional approach that seeks to manage combined effects of the human footprint on biodiversity across large spatial scales. Challenges to implementing this approach include a lack of ecological data at large spatial scales, the high cost of monitoring multiple indicators, and the need to manage multiple footprints across industries. To inform development of effective CEM, we used large mammals as indicators to address the following questions: a) do species respond more strongly to individual footprint features or to cumulative effects (combined area of all footprint types, measured as total footprint), b) which features elicit the strongest responses across species, and c) are the direction of responses to footprint consistent? We used data from 12 years of snowtrack surveys (2001-2013) in the boreal forest of Alberta, coupled with regional footprint and landcover data, to develop generalized linear mixed-effects models relating the relative abundance of five boreal mammals [gray wolf (Canis lupus), Canada lynx (Lynx canadensis), coyote (Canis latrans), white-tailed deer (Odocoileus virginianus) and moose (Alces alces)] to individual and cumulative effects of the human footprint. We found that across species the strongest responses were to agriculture, roads, and young cutblocks (<10 years), suggesting these as potential priority stressors to address within CEM. Most species also responded to total footprint, indicating that in the absence of detailed information on individual features, this coarse measure can serve as an index of cumulative effects. There was high variability in direction and magnitude of responses across species, indicating that community-level responses are likely and should be considered within CEM planning. Copyright © 2018 Elsevier Ltd. All

Artificial intelligence: Neural network model as the multidisciplinary team member in clinical decision support to avoid medical mistakes.

PubMed

Buzaev, Igor Vyacheslavovich; Plechev, Vladimir Vyacheslavovich; Nikolaeva, Irina Evgenievna; Galimova, Rezida Maratovna

2016-09-01

The continuous uninterrupted feedback system is the essential part of any well-organized system. We propose aLYNX concept that is a possibility to use an artificial intelligence algorithm or a neural network model in decision-making system so as to avoid possible mistakes and to remind the doctors to review tactics once more in selected cases. aLYNX system includes: registry with significant factors, decisions and results; machine learning process based on this registry data; the use of the machine learning results as the adviser. We show a possibility to build a computer adviser with a neural network model for making a choice between coronary aortic bypass surgery (CABG) and percutaneous coronary intervention (PCI) in order to achieve a higher 5-year survival rate in patients with angina based on the experience of 5107 patients. The neural network was trained by 4679 patients who achieved 5-year survival. Among them, 2390 patients underwent PCI and 2289 CABG. After training, the correlation coefficient ( r ) of the network was 0.74 for training, 0.67 for validation, 0.71 for test and 0.73 for total. Simulation of the neural network function has been performed after training in the two groups of patients with known 5-year outcome. The disagreement rate was significantly higher in the dead patient group than that in the survivor group between neural network model and heart team [16.8% (787/4679) vs. 20.3% (87/428), P  = 0.065)]. The study shows the possibility to build a computer adviser with a neural network model for making a choice between CABG and PCI in order to achieve a higher 5-year survival rate in patients with angina.

SLEEPLESS is a bi-functional regulator of excitability and cholinergic synaptic transmission

PubMed Central

Wu, Meilin; Robinson, James E.; Joiner, William J.

2014-01-01

Summary Background Although sleep is conserved throughout evolution, the molecular basis of its control is still largely a mystery. We previously showed that the quiver/sleepless (qvr/sss) gene encodes a membrane-tethered protein that is required for normal sleep in Drosophila. SLEEPLESS (SSS) protein functions, at least in part, by upregulating the levels and open probability of Shaker (Sh) potassium channels to suppress neuronal excitability and enable sleep. Consistent with this proposed mechanism, loss-of-function mutations in Sh phenocopy qvr/sss null mutants. However, sleep is more genetically modifiable in Sh than in qvr/sss mutants, suggesting that sss may regulate additional molecules to influence sleep. Results Here we show that SSS also antagonizes nicotinic acetylcholine receptors (nAChRs) to reduce synaptic transmission and promote sleep. Mimicking this antagonism with the nAChR inhibitor mecamylamine or by RNAi knockdown of specific nAChR subunits is sufficient to restore sleep to qvr/sss mutants. Regulation of nAChR activity by SSS occurs post-transcriptionally since the levels of nAChR mRNAs are unchanged in qvr/sss mutants. Regulation of nAChR activity by SSS may in fact be direct, since SSS forms a stable complex with and antagonizes fly nAChR function in transfected cells. Intriguingly, lynx1, a mammalian homolog of SSS, can partially restore normal sleep to qvr/sss mutants, and lynx1 can form stable complexes with Shaker-type channels and nAChRs. Conclusions Together, our data point to an evolutionarily conserved, bi-functional role for SSS and its homologs in controlling excitability and synaptic transmission in fundamental processes of the nervous system such as sleep. PMID:24613312

New World feline APOBEC3 potently controls inter-genus lentiviral transmission.

PubMed

Konno, Yoriyuki; Nagaoka, Shumpei; Kimura, Izumi; Yamamoto, Keisuke; Kagawa, Yumiko; Kumata, Ryuichi; Aso, Hirofumi; Ueda, Mahoko Takahashi; Nakagawa, So; Kobayashi, Tomoko; Koyanagi, Yoshio; Sato, Kei

2018-04-10

The apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3; A3) gene family appears only in mammalian genomes. Some A3 proteins can be incorporated into progeny virions and inhibit lentiviral replication. In turn, the lentiviral viral infectivity factor (Vif) counteracts the A3-mediated antiviral effect by degrading A3 proteins. Recent investigations have suggested that lentiviral vif genes evolved to combat mammalian APOBEC3 proteins, and have further proposed that the Vif-A3 interaction may help determine the co-evolutionary history of cross-species lentiviral transmission in mammals. Here we address the co-evolutionary relationship between two New World felids, the puma (Puma concolor) and the bobcat (Lynx rufus), and their lentiviruses, which are designated puma lentiviruses (PLVs). We demonstrate that PLV-A Vif counteracts the antiviral action of APOBEC3Z3 (A3Z3) of both puma and bobcat, whereas PLV-B Vif counteracts only puma A3Z3. The species specificity of PLV-B Vif is irrespective of the phylogenic relationships of feline species in the genera Puma, Lynx and Acinonyx. We reveal that the amino acid at position 178 in the puma and bobcat A3Z3 is exposed on the protein surface and determines the sensitivity to PLV-B Vif-mediated degradation. Moreover, although both the puma and bobcat A3Z3 genes are polymorphic, their sensitivity/resistance to PLV Vif-mediated degradation is conserved. To the best of our knowledge, this is the first study suggesting that the host A3 protein potently controls inter-genus lentiviral transmission. Our findings provide the first evidence suggesting that the co-evolutionary arms race between lentiviruses and mammals has occurred in the New World.

Occurrence and molecular genotyping of Giardia duodenalis and Cryptosporidium spp. in wild mesocarnivores in Spain.

PubMed

Mateo, Marta; de Mingo, Marta Hernández; de Lucio, Aida; Morales, Lucía; Balseiro, Ana; Espí, Alberto; Barral, Marta; Lima Barbero, José Francisco; Habela, Miguel Ángel; Fernández-García, José L; Bernal, Rafael Calero; Köster, Pamela C; Cardona, Guillermo A; Carmena, David

2017-02-15

There is a surprisingly scarce amount of epidemiological and molecular data on the prevalence, frequency, and diversity of the intestinal protozoan parasites Giardia duodenalis and Cryptosporidium spp. in wildlife in general and mesocarnivore species in particular. Consequently, the extent of the cyst/oocyst environmental contamination attributable to these wild host species and their potential implications for public veterinary health remain largely unknown. In this molecular epidemiological survey a total of 193 individual faecal samples from badgers (Meles meles, n=70), ferrets (Mustela putorius furo, n=2), genets (Genetta genetta, n=6), Iberian lynxes (Lynx pardinus, n=6), beech martens (Martes foina, n=8), mongooses (Herpestes ichneumon, n=2), otters (Lutra lutra, n=2), polecats (Mustela putorius, n=2), red foxes (Vulpes vulpes, n=87), wildcats (Felis silvestris, n=2), and wolves (Canis lupus, n=6) were obtained from road-killed, hunted, and accidentally found carcasses, and from camera-trap surveys or animals entering rescue shelters, during the period December 2003-April 2016. Investigated specimens were collected in five Spanish autonomous regions including Andalusia (n=1), Asturias (n=69), Basque Country (n=49), Castile-La Mancha (n=38), and Extremadura (n=36). The presence of cysts/oocysts was confirmed by PCR-based methods targeting the small subunit (ssu) ribosomal RNA gene of these parasite species. Genotyping of the obtained isolates were attempted at appropriate markers including the glutamate dehydrogenase (G. duodenalis) and the 60-kDa glycoprotein (C. parvum and C. ubiquitum) loci. Overall, G. duodenalis was detected in 8% (7/87) of red foxes, a single beech marten, and a single wolf, respectively. Cryptosporidium was identified in 3% (2/70) of badgers, 8% (7/87) of red foxes, a single genet, and a single mongoose, respectively. None of the nine G. duodenalis isolates generated could be genotyped at the assemblage/sub-assemblage level. Out of the

Electronic nose for the identification of pig feeding and ripening time in Iberian hams.

PubMed

Santos, J P; García, M; Aleixandre, M; Horrillo, M C; Gutiérrez, J; Sayago, I; Fernández, M J; Arés, L

2004-03-01

An electronic nose system to control the processing of dry-cured Iberian ham is presented. The sensors involved are tin oxide semiconductors thin films. They were prepared by RF sputtering. Some of the sensors were doped with metal catalysts as Pt and Pd, in order to improve the selectivity of the sensors. The multisensor with 16 semiconductor sensors, gave different responses from two types of dry-cured Iberian hams which differ in the feeding and curing time. The data has been analysed using the PCA (principal component analysis) and backpropagation and probabilistic neural networks. The analysis shows that different types of Iberian ham can be discriminated and identified successfully.

Atlas of Iberian water beetles (ESACIB database).

PubMed

Sánchez-Fernández, David; Millán, Andrés; Abellán, Pedro; Picazo, Félix; Carbonell, José A; Ribera, Ignacio

2015-01-01

The ESACIB ('EScarabajos ACuáticos IBéricos') database is provided, including all available distributional data of Iberian and Balearic water beetles from the literature up to 2013, as well as from museum and private collections, PhD theses, and other unpublished sources. The database contains 62,015 records with associated geographic data (10×10 km UTM squares) for 488 species and subspecies of water beetles, 120 of them endemic to the Iberian Peninsula and eight to the Balearic Islands. This database was used for the elaboration of the "Atlas de los Coleópteros Acuáticos de España Peninsular". In this dataset data of 15 additional species has been added: 11 that occur in the Balearic Islands or mainland Portugal but not in peninsular Spain and an other four with mainly terrestrial habits within the genus Helophorus (for taxonomic coherence). The complete dataset is provided in Darwin Core Archive format.

Atlas of Iberian water beetles (ESACIB database)

PubMed Central

Sánchez-Fernández, David; Millán, Andrés; Abellán, Pedro; Picazo, Félix; Carbonell, José A.; Ribera, Ignacio

2015-01-01

Abstract The ESACIB (‘EScarabajos ACuáticos IBéricos’) database is provided, including all available distributional data of Iberian and Balearic water beetles from the literature up to 2013, as well as from museum and private collections, PhD theses, and other unpublished sources. The database contains 62,015 records with associated geographic data (10×10 km UTM squares) for 488 species and subspecies of water beetles, 120 of them endemic to the Iberian Peninsula and eight to the Balearic Islands. This database was used for the elaboration of the “Atlas de los Coleópteros Acuáticos de España Peninsular”. In this dataset data of 15 additional species has been added: 11 that occur in the Balearic Islands or mainland Portugal but not in peninsular Spain and an other four with mainly terrestrial habits within the genus Helophorus (for taxonomic coherence). The complete dataset is provided in Darwin Core Archive format. PMID:26448717

Increased flexibility for modeling telemetry and nest-survival data using the multistate framework

USGS Publications Warehouse

Devineau, Olivier; Kendall, William L.; Doherty, Paul F.; Shenk, Tanya M.; White, Gary C.; Lukacs, Paul M.; Burnham, Kenneth P.

2014-01-01

Although telemetry is one of the most common tools used in the study of wildlife, advances in the analysis of telemetry data have lagged compared to progress in the development of telemetry devices. We demonstrate how standard known-fate telemetry and related nest-survival data analysis models are special cases of the more general multistate framework. We present a short theoretical development, and 2 case examples regarding the American black duck and the mallard. We also present a more complex lynx data analysis. Although not necessary in all situations, the multistate framework provides additional flexibility to analyze telemetry data, which may help analysts and biologists better deal with the vagaries of real-world data collection.

Military helicopter cockpit modernization

NASA Astrophysics Data System (ADS)

Hall, Andrew S.

2001-09-01

This paper describes some of the initiatives being progressed by Smiths Aerospace to enhance the operational effectiveness of military helicopters, with particular emphasis on the GWHL Lynx and EH Industries EH101 programs. The areas discussed include engine instrumentation, flight instrumentation and the mission system displays. Various Crew Stations are described which provide a suite of AMLCD displays which: -Integrate information from the aircraft engine, electrical power and hydraulic systems onto 5ATI displays -Integrate primary flight, navigation and mission system sensor information onto large area (61/4' square or 6' by 8') displays -Provide standby attitude and air data information in the event of major system failure on 3ATI displays.

A simple, inexpensive video camera setup for the study of avian nest activity

USGS Publications Warehouse

Sabine, J.B.; Meyers, J.M.; Schweitzer, Sara H.

2005-01-01

Time-lapse video photography has become a valuable tool for collecting data on avian nest activity and depredation; however, commercially available systems are expensive (>USA $4000/unit). We designed an inexpensive system to identify causes of nest failure of American Oystercatchers (Haematopus palliatus) and assessed its utility at Cumberland Island National Seashore, Georgia. We successfully identified raccoon (Procyon lotor), bobcat (Lynx rufus), American Crow (Corvus brachyrhynchos), and ghost crab (Ocypode quadrata) predation on oystercatcher nests. Other detected causes of nest failure included tidal overwash, horse trampling, abandonment, and human destruction. System failure rates were comparable with commercially available units. Our system's efficacy and low cost (<$800) provided useful data for the management and conservation of the American Oystercatcher.

Magnetic Calorimeter Arrays with High Sensor Inductance and Dense Wiring

NASA Astrophysics Data System (ADS)

Stevenson, T. R.; Balvin, M. A.; Bandler, S. R.; Devasia, A. M.; Nagler, P. C.; Smith, S. J.; Yoon, W.

2018-05-01

We describe prototype arrays of magnetically coupled microcalorimeters fabricated with an approach scalable to very large format arrays. The superconducting interconnections and sensor coils have sufficiently low inductance in the wiring and sufficiently high inductance in the coils in each pixel, to enable arrays containing greater than 4000 sensors and 100,000 X-ray absorbers to be used in future astrophysics missions such as Lynx. We have used projection lithography to create submicron patterns (e.g., 400 nm lines and spaces) in our niobium sensor coils and wiring, integrated with gold-erbium sensor films and gold X-ray absorbers. Our prototype devices will explore the device physics of metallic magnetic calorimeters as feature sizes are reduced to nanoscale.

KSC-2012-4577

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR Director of Flight Test Operations Rick Searfoss, a former NASA astronaut, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4574

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Lynda Weatherman, President of the Economic Development Commission of Florida Space Coast, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos)

PubMed Central

Valdiosera, Cristina E.; García-Garitagoitia, José Luis; Garcia, Nuria; Doadrio, Ignacio; Thomas, Mark G.; Hänni, Catherine; Arsuaga, Juan-Luis; Barnes, Ian; Hofreiter, Michael; Orlando, Ludovic; Götherström, Anders

2008-01-01

The endangered brown bear populations (Ursus arctos) in Iberia have been suggested to be the last fragments of the brown bear population that served as recolonization stock for large parts of Europe during the Pleistocene. Conservation efforts are intense, and results are closely monitored. However, the efforts are based on the assumption that the Iberian bears are a unique unit that has evolved locally for an extended period. We have sequenced mitochondrial DNA (mtDNA) from ancient Iberian bear remains and analyzed them as a serial dataset, monitoring changes in diversity and occurrence of European haplogroups over time. Using these data, we show that the Iberian bear population has experienced a dynamic, recent evolutionary history. Not only has the population undergone mitochondrial gene flow from other European brown bears, but the effective population size also has fluctuated substantially. We conclude that the Iberian bear population has been a fluid evolutionary unit, developed by gene flow from other populations and population bottlenecks, far from being in genetic equilibrium or isolated from other brown bear populations. Thus, the current situation is highly unusual and the population may in fact be isolated for the first time in its history. PMID:18347332

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos).

PubMed

Valdiosera, Cristina E; García-Garitagoitia, José Luis; Garcia, Nuria; Doadrio, Ignacio; Thomas, Mark G; Hänni, Catherine; Arsuaga, Juan-Luis; Barnes, Ian; Hofreiter, Michael; Orlando, Ludovic; Götherström, Anders

2008-04-01

The endangered brown bear populations (Ursus arctos) in Iberia have been suggested to be the last fragments of the brown bear population that served as recolonization stock for large parts of Europe during the Pleistocene. Conservation efforts are intense, and results are closely monitored. However, the efforts are based on the assumption that the Iberian bears are a unique unit that has evolved locally for an extended period. We have sequenced mitochondrial DNA (mtDNA) from ancient Iberian bear remains and analyzed them as a serial dataset, monitoring changes in diversity and occurrence of European haplogroups over time. Using these data, we show that the Iberian bear population has experienced a dynamic, recent evolutionary history. Not only has the population undergone mitochondrial gene flow from other European brown bears, but the effective population size also has fluctuated substantially. We conclude that the Iberian bear population has been a fluid evolutionary unit, developed by gene flow from other populations and population bottlenecks, far from being in genetic equilibrium or isolated from other brown bear populations. Thus, the current situation is highly unusual and the population may in fact be isolated for the first time in its history.

Capability of MODIS radiance to analyze Iberian turbid plumes

NASA Astrophysics Data System (ADS)

Fernandez-Novoa, Diego; deCastro, Maite; Des, Marisela; Costoya, Xurxo; Mendes, Renato; Gomez-Gesteira, Moncho

2017-04-01

River plumes are formed near river mouths by freshwater and riverine materials. Therefore, the area influenced by freshwater (salinity plume) is usually negatively correlated with the area occupied by suspension and dissolved material (turbid plume). Suspended material results in a strong signal detected by satellite sensors whereas ocean clear waters have negligible contributions. Thus, remote sensing data, such as radiance obtained from Moderate Resolution Imaging Spectroradiometer (MODIS), are a very useful tool to analyze turbid plumes due to the high spatial and time resolution provided. Here, MODIS capability for characterizing similarities and differences among the most important Iberian plumes was assessed under the influence of their main forcing. Daily radiance data from MODIS-Aqua and MODIS-Terra satellite sensors were processed obtaining a resolution of 500 m. Two approaches are usually used for atmospheric correction treatments: Near-Infrared (NIR) bands and a combined algorithm using NIR and Short Wave Infrared (SWIR) bands. In the particular case of Iberian Peninsula plumes both methods offered similar results, although NIR bands present a lower associated error. MODIS allows working with several bands of normalized water-leaving radiances (nLw). Focusing in the resolution provided, nLw555 and 645 were the most appropriate because both provide the best coverage and correlation with river discharge. The nLw645 band was chosen because has a lower water penetration avoiding overestimations of turbidity caused by shallow seafloor areas and/or upwelling blooms. Daily data from both satellites were merged to enhance the robustness and precision of the study by increasing the number of available pixels. Results indicate that differences between radiance data from both satellites are negligible for Iberian plumes, justifying the merging. By last, each turbid limit, to delimit the respective plume from adjacent seawater, was obtained using two alternative

Hidden MHC genetic diversity in the Iberian ibex (Capra pyrenaica).

PubMed

Angelone, Samer; Jowers, Michael J; Molinar Min, Anna Rita; Fandos, Paulino; Prieto, Paloma; Pasquetti, Mario; Cano-Manuel, Francisco Javier; Mentaberre, Gregorio; Olvera, Jorge Ramón López; Ráez-Bravo, Arián; Espinosa, José; Pérez, Jesús M; Soriguer, Ramón C; Rossi, Luca; Granados, José Enrique

2018-05-08

Defining hidden genetic diversity within species is of great significance when attempting to maintain the evolutionary potential of natural populations and conduct appropriate management. Our hypothesis is that isolated (and eventually small) wild animal populations hide unexpected genetic diversity due to their maintenance of ancient polymorphisms or introgressions. We tested this hypothesis using the Iberian ibex (Capra pyrenaica) as an example. Previous studies based on large sample sizes taken from its principal populations have revealed that the Iberian ibex has a remarkably small MHC DRB1 diversity (only six remnant alleles) as a result of recent population bottlenecks and a marked demographic decline that has led to the extinction of two recognized subspecies. Extending on the geographic range to include non-studied isolated Iberian ibex populations, we sequenced a new MHC DRB1 in what seemed three small isolated populations in Southern Spain (n = 132). The findings indicate a higher genetic diversity than previously reported in this important gene. The newly discovered allele, MHC DRB1*7, is identical to one reported in the domestic goat C. aegagrus hircus. Whether or not this is the result of ancient polymorphisms maintained by balancing selection or, alternatively, introgressions from domestic goats through hybridization needs to be clarified in future studies. However, hybridization between Iberian ibex and domestic goats has been reported in Spain and the fact that the newly discovered allele is only present in one of the small isolated populations and not in the others suggests introgression. The new discovered allele is not expected to increase fitness in C. pyrenaica since it generates the same protein as the existing MHC DRB1*6. Analysis of a microsatellite locus (OLADRB1) near the new MHC DRB1*7 gene reveals a linkage disequilibrium between these two loci. The allele OLADRB1, 187 bp in length, was unambiguously linked to the MHC DRB1*7 allele

Marine exotic isopods from the Iberian Peninsula and nearby waters.

PubMed

Martínez-Laiz, Gemma; Ros, Macarena; Guerra-García, José M

2018-01-01

Effective management of marine bioinvasions starts with prevention, communication among the scientific community and comprehensive updated data on the distribution ranges of exotic species. Despite being a hotspot for introduction due to numerous shipping routes converging at the Strait of Gibraltar, knowledge of marine exotics in the Iberian Peninsula is scarce, especially of abundant but small-sized and taxonomically challenging taxa such as the Order Isopoda. To fill this gap, we conducted several sampling surveys in 44 marinas and provide the first comprehensive study of marine exotic isopods from the Iberian Peninsula, the southern side of the Strait of Gibraltar (northern Africa) and the Balearic Islands. Exotic species included Ianiropsis serricaudis (first record for the Iberian Peninsula and Lusitanian marine province), Paracerceis sculpta (first record for the Alboran Sea ecoregion), Paradella dianae , Paranthura japonica (earliest record for the Iberian Peninsula) and Sphaeroma walkeri . Photographs with morphological details for identification for non-taxonomic experts are provided, their worldwide distribution is updated and patterns of invasion are discussed. We report an expansion in the distribution range of all species, especially at the Strait of Gibraltar and nearby areas. Ianiropsis serricaudis and Paranthura japonica are polyvectic, with shellfish trade and recreational boating being most probable vectors for their introduction and secondary spread. The subsequent finding of the studied species in additional marinas over the years points at recreational boating as a vector and indicates a future spread. We call for attention to reduce lags in the detection and reporting of small-size exotics, which usually remain overlooked or underestimated until the invasion process is at an advanced stage.

Marine exotic isopods from the Iberian Peninsula and nearby waters

PubMed Central

Ros, Macarena; Guerra-García, José M.

2018-01-01

Effective management of marine bioinvasions starts with prevention, communication among the scientific community and comprehensive updated data on the distribution ranges of exotic species. Despite being a hotspot for introduction due to numerous shipping routes converging at the Strait of Gibraltar, knowledge of marine exotics in the Iberian Peninsula is scarce, especially of abundant but small-sized and taxonomically challenging taxa such as the Order Isopoda. To fill this gap, we conducted several sampling surveys in 44 marinas and provide the first comprehensive study of marine exotic isopods from the Iberian Peninsula, the southern side of the Strait of Gibraltar (northern Africa) and the Balearic Islands. Exotic species included Ianiropsis serricaudis (first record for the Iberian Peninsula and Lusitanian marine province), Paracerceis sculpta (first record for the Alboran Sea ecoregion), Paradella dianae, Paranthura japonica (earliest record for the Iberian Peninsula) and Sphaeroma walkeri. Photographs with morphological details for identification for non-taxonomic experts are provided, their worldwide distribution is updated and patterns of invasion are discussed. We report an expansion in the distribution range of all species, especially at the Strait of Gibraltar and nearby areas. Ianiropsis serricaudis and Paranthura japonica are polyvectic, with shellfish trade and recreational boating being most probable vectors for their introduction and secondary spread. The subsequent finding of the studied species in additional marinas over the years points at recreational boating as a vector and indicates a future spread. We call for attention to reduce lags in the detection and reporting of small-size exotics, which usually remain overlooked or underestimated until the invasion process is at an advanced stage. PMID:29507825

Genetic Footprints of Iberian Cattle in America 500 Years after the Arrival of Columbus

PubMed Central

Martínez, Amparo M.; Gama, Luis T.; Cañón, Javier; Ginja, Catarina; Delgado, Juan V.; Dunner, Susana; Landi, Vincenzo; Martín-Burriel, Inmaculada; Penedo, M. Cecilia T.; Rodellar, Clementina; Vega-Pla, Jose Luis; Acosta, Atzel; Álvarez, Luz A.; Camacho, Esperanza; Cortés, Oscar; Marques, Jose R.; Martínez, Roberto; Martínez, Ruben D.; Melucci, Lilia; Martínez-Velázquez, Guillermo; Muñoz, Jaime E.; Postiglioni, Alicia; Quiroz, Jorge; Sponenberg, Philip; Uffo, Odalys; Villalobos, Axel; Zambrano, Delsito; Zaragoza, Pilar

2012-01-01

Background American Creole cattle presumably descend from animals imported from the Iberian Peninsula during the period of colonization and settlement, through different migration routes, and may have also suffered the influence of cattle directly imported from Africa. The introduction of European cattle, which began in the 18th century, and later of Zebu from India, has threatened the survival of Creole populations, some of which have nearly disappeared or were admixed with exotic breeds. Assessment of the genetic status of Creole cattle is essential for the establishment of conservation programs of these historical resources. Methodology/Principal Findings We sampled 27 Creole populations, 39 Iberian, 9 European and 6 Zebu breeds. We used microsatellite markers to assess the origins of Creole cattle, and to investigate the influence of different breeds on their genetic make-up. The major ancestral contributions are from breeds of southern Spain and Portugal, in agreement with the historical ports of departure of ships sailing towards the Western Hemisphere. This Iberian contribution to Creoles may also include some African influence, given the influential role that African cattle have had in the development of Iberian breeds, but the possibility of a direct influence on Creoles of African cattle imported to America can not be discarded. In addition to the Iberian influence, the admixture with other European breeds was minor. The Creoles from tropical areas, especially those from the Caribbean, show clear signs of admixture with Zebu. Conclusions/Significance Nearly five centuries since cattle were first brought to the Americas, Creoles still show a strong and predominant signature of their Iberian ancestors. Creole breeds differ widely from each other, both in genetic structure and influences from other breeds. Efforts are needed to avoid their extinction or further genetic erosion, which would compromise centuries of selective adaptation to a wide range of

VizieR Online Data Catalog: Imaging and spectroscopy in Lynx W (Jorgensen+, 2014)

NASA Astrophysics Data System (ADS)

Jorgensen, I.; Chiboucas, K.; Toft, S.; Bergmann, M.; Zirm, A.; Schiavon, R. P.; Grutzbauch, R.

2017-01-01

Ground-based imaging of RX J0848.6+4453 was obtained primarily to show the performance gain provided by replacing the original E2V charge-coupled devices (E2V CCDs) in Gemini Multi-Object Spectrograph on Gemini North (GMOS-N) with E2V Deep Depletion CCDs (E2V DD CCDs). This replacement was done in 2011 October. Imaging of RX J0848.6+4453 was obtained with the original E2V CCDs in 2011 October (UT 2011 Oct 1 to 2011 Oct 2; Program ID: GN-2011B-DD-3) and repeated with the E2V DD CCDs in 2011 November. The imaging was done in the z' filter. For the observations with the original E2V CCDs the total exposure time was 60 minutes (obtained as 12 five-minute exposures) and the co-added image had an image quality of FWHM=0.52'' measured from point sources in the field. For the E2V DD CCDs a total exposure time of 55 minutes was obtained and the resulting image quality was FWHM=0.51''. Imaging of RX J0848.6+4453 was also obtained with Hubble Space Telescope /Advanced Camera for Surveys (HST/ACS using the filters F775W and F850LP) under the program ID 9919. The spectroscopic observations were obtained in multi-object spectroscopic (MOS) mode with GMOS-N (UT 2011 Nov 24 to 2012 Jan 4, Program ID: GN-2011B-DD-5; UT 2013 Mar 9 to 2013 May 18, Program ID: GN-2013A-Q-65). Table10 lists the photometric parameters for the spectroscopic sample as derived from the HST/ACS observations in F850LP and F775W. Tables 11 and 12 list the results from the template fitting and the derived line strengths, respectively. (3 data files).

Long-term patterns in Iberian hare population dynamics in a protected area (Doñana National Park) in the southwestern Iberian Peninsula: Effects of weather conditions and plant cover.

PubMed

Carro, Francisco; Soriguer, Ramón C

2017-01-01

The Iberian hare (Lepus granatensis) is a widely distributed endemic species in the Iberian Peninsula. To improve our knowledge of its population dynamics, the relative abundance and population trends of the Iberian hare were studied in the autumns of 1995-2012 in a protected area (Doñana National Park) by spotlighting in 2 different habitats: marshland and ecotones. The average relative abundance was 0.38 hare/km (SD = 0.63) in the marshland and 3.6 hares/km (SD = 4.09) in ecotones. The Iberian hare population exhibited local interannual fluctuations and a negative population trend during the study period (1995-2012). The results suggest that its populations are in decline. The flooding of parts of the marshland in June, July and October favor hare abundance in the ecotone. Hare abundance in the marshland increases as the flooded surface area increases in October. These effects are more pronounced if the rains are early (October) and partially flood the marsh. By contrast, when marsh grasses and graminoids are very high and thick (as measured using the aerial herbaceous biomass [biomass marshland] as a proxy), the abundance of hares decreases dramatically as does the area of the marsh that is flooded (in November). © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Pre-cure freezing effect on physicochemical, texture and sensory characteristics of Iberian ham.

PubMed

Pérez-Palacios, T; Ruiz, J; Martín, D; Barat, J M; Antequera, T

2011-04-01

The aim of this work was to investigate the effect of pre-cure freezing on the physicochemical, texture and sensory characteristics of raw and dry-cured hams. Both, refrigerated (R) and pre-cure frozen (F) hams showed the same weight losses during the processing. At the green stage F Iberian hams had lower moisture content, higher values of a* and chroma, lower hardness and chewiness and higher adhesiveness and springiness than R ones. However, at the end of the processing R and F Iberian hams only were different in salt content, F hams showing lower values than R ones. Sensory analysis of Iberian dry-cured ham did not show differences in salty taste. Panelist detected a higher fat hardness and lean pastiness in F than in R hams. The overall acceptability for both groups of dry-cured hams was between average and good.

Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon.

PubMed

Marques, Isabel; Shiposha, Valeriia; López-Alvarez, Diana; Manzaneda, Antonio J; Hernandez, Pilar; Olonova, Marina; Catalán, Pilar

2017-06-15

Brachypodium distachyon (Poaceae), an annual Mediterranean Aluminum (Al)-sensitive grass, is currently being used as a model species to provide new information on cereals and biofuel crops. The plant has a short life cycle and one of the smallest genomes in the grasses being well suited to experimental manipulation. Its genome has been fully sequenced and several genomic resources are being developed to elucidate key traits and gene functions. A reliable germplasm collection that reflects the natural diversity of this species is therefore needed for all these genomic resources. However, despite being a model plant, we still know very little about its genetic diversity. As a first step to overcome this gap, we used nuclear Simple Sequence Repeats (nSSR) to study the patterns of genetic diversity and population structure of B. distachyon in 14 populations sampled across the Iberian Peninsula (Spain), one of its best known areas. We found very low levels of genetic diversity, allelic number and heterozygosity in B. distachyon, congruent with a highly selfing system. Our results indicate the existence of at least three genetic clusters providing additional evidence for the existence of a significant genetic structure in the Iberian Peninsula and supporting this geographical area as an important genetic reservoir. Several hotspots of genetic diversity were detected and populations growing on basic soils were significantly more diverse than those growing in acidic soils. A partial Mantel test confirmed a statistically significant Isolation-By-Distance (IBD) among all studied populations, as well as a statistically significant Isolation-By-Environment (IBE) revealing the presence of environmental-driven isolation as one explanation for the genetic patterns found in the Iberian Peninsula. The finding of higher genetic diversity in eastern Iberian populations occurring in basic soils suggests that these populations can be better adapted than those occurring in western areas

Novel Gammaherpesviruses in North American Domestic Cats, Bobcats, and Pumas: Identification, Prevalence, and Risk Factors

PubMed Central

Beatty, Julia A.; Stutzman-Rodriguez, Kathryn R.; Carver, Scott; Lozano, Caitlin C.; Lee, Justin S.; Lappin, Michael R.; Riley, Seth P. D.; Serieys, Laurel E. K.; Logan, Kenneth A.; Sweanor, Linda L.; Boyce, Walter M.; Vickers, T. Winston; McBride, Roy; Crooks, Kevin R.; Lewis, Jesse S.; Cunningham, Mark W.; Rovnak, Joel; Quackenbush, Sandra L.; VandeWoude, Sue

2014-01-01

ABSTRACT Gammaherpesviruses (GHVs) are a diverse and rapidly expanding group of viruses associated with a variety of disease conditions in humans and animals. To identify felid GHVs, we screened domestic cat (Felis catus), bobcat (Lynx rufus), and puma (Puma concolor) blood cell DNA samples from California, Colorado, and Florida using a degenerate pan-GHV PCR. Additional pan-GHV and long-distance PCRs were used to sequence a contiguous 3.4-kb region of each putative virus species, including partial glycoprotein B and DNA polymerase genes. We identified three novel GHVs, each present predominantly in one felid species: Felis catus GHV 1 (FcaGHV1) in domestic cats, Lynx rufus GHV 1 (LruGHV1) in bobcats, and Puma concolor GHV 1 (PcoGHV1) in pumas. To estimate infection prevalence, we developed real-time quantitative PCR assays for each virus and screened additional DNA samples from all three species (n = 282). FcaGHV1 was detected in 16% of domestic cats across all study sites. LruGHV1 was detected in 47% of bobcats and 13% of pumas across all study sites, suggesting relatively common interspecific transmission. PcoGHV1 was detected in 6% of pumas, all from a specific region of Southern California. The risk of infection for each host varied with geographic location. Age was a positive risk factor for bobcat LruGHV1 infection, and age and being male were risk factors for domestic cat FcaGHV1 infection. Further characterization of these viruses may have significant health implications for domestic cats and may aid studies of free-ranging felid ecology. IMPORTANCE Gammaherpesviruses (GHVs) establish lifelong infection in many animal species and can cause cancer and other diseases in humans and animals. In this study, we identified the DNA sequences of three GHVs present in the blood of domestic cats (Felis catus), bobcats (Lynx rufus), and pumas (Puma concolor; also known as mountain lions, cougars, and panthers). We found that these viruses were closely related to, but

Instrumental colour of Iberian ham subcutaneous fat and lean (biceps femoris): Influence of crossbreeding and rearing system.

PubMed

Carrapiso, Ana I; García, Carmen

2005-10-01

The influence of crossbreeding (Iberian vs Iberian×Duroc 50% pigs) and rearing system (Montanera vs Pienso) on the instrumental colour of Iberian ham (subcutaneous fat and biceps femoris muscle) and the relationships to sensory appearance and chemical composition were researched by using a factorial design. In subcutaneous fat, a significant effect (p<0.05) of crossbreeding and rearing system was found: b* and chroma were larger in hams from Iberian pigs than from Iberian×Duroc (50%) pigs, and L*, a* and chroma were larger in Pienso hams than in Montanera hams. CIEL*a*b* variables of subcutaneous fat were closely related to subcutaneous fatty acid composition, the largest correlationships involving L* (L* and 18:0, 0.652, p<0.001; L* and 18:1, -0.616, p<0.001). Instrumental colour variables and sensory appearance were also correlated (L* and fat pinkness, -0.539, p<0.001). In lean (biceps femoris), instrumental colour data was not affected by crossbreeding and rearing system. CIEL*a*b* variables were not related to chemical composition (moisture, NaCl, intramuscular fat and pigment content), although they were correlated to sensory appearance (L* and marbling, 0.419, p=0.014).

Geochemistry and metamorphism of the Mouriscas Complex, Ossa-Morena/Central Iberian zone boundary, Iberian Massif, Central Portugal: Implications for the Cadomian and Variscan orogenies

NASA Astrophysics Data System (ADS)

Henriques, S. B. A.; Neiva, A. M. R.; Tajčmanová, L.; Dunning, G. R.

2018-01-01

The Mouriscas Complex is a deformed and metamorphosed predominantly mafic igneous complex of Ediacaran and Ordovician age and crops out at the Ossa-Morena/Central Iberian zone boundary in the Iberian Massif, Central Portugal. It comprises amphibolite with Neoproterozoic protoliths (ca. 544 Ma), protomylonitic felsic dykes derived from younger trondhjemitic protoliths (ca. 483 Ma) and garnet amphibolite derived of even younger dioritic protoliths (ca. 477 Ma). The protoliths of the Neoproterozoic amphibolites are calc-alkaline magmas of basic to intermediate compositions with intraplate and active continental margin affinities and are considered to represent the final phase of the Cadomian arc magmatism. They are interpreted to have originated as coarse-grained intrusions, likely gabbro or diorite and generated from the partial melting of meta-igneous lower crust and mantle. Their emplacement occurred near the Cadomian metamorphic event dated at ca. 540 Ma (P = 7-8 kbar and T = 640-660 °C) which is interpreted to represent a continental collision. During the Late Cambrian-Early Ordovician an extensional episode occurred in the central-southern Iberian Massif and was also observed in other areas of the Variscan Orogen. It led to mantle upwelling and to the development of an aborted intracratonic rift located at the Ossa-Morena/Central Iberian zone boundary and to the opening of the Rheic Ocean to the south of the area studied in present coordinates (i.e., between the Ossa-Morena and South Portuguese Zones). This event has been dated at ca. 477 Ma and was responsible for the melting of deep ancient mafic crust and mantle with formation of bimodal magmatism in an intra-plate setting, as indicated by the protoliths of the protomylonitic felsic dykes with trondhjemitic composition and of the garnet amphibolite. Subsequent Variscan metamorphism took place under amphibolite facies conditions (P = 4-5.5 kbar; T = 600-625 °C) at lower P-T conditions than the Cadomian

Population structure of Cicada barbara Stål (Hemiptera, Cicadoidea) from the Iberian Peninsula and Morocco based on mitochondrial DNA analysis.

PubMed

Pinto-Juma, G A; Quartau, J A; Bruford, M W

2008-02-01

We assess the genetic history and population structure of Cicada barbara in Morocco and the Iberian Peninsula, based on analysis of the mitochondrial cytochrome b gene. The divergence between Morocco and the Iberian Peninsula populations was strongly corroborated by the molecular data, suggesting genetically isolated populations with a low level of gene flow. The Ceuta population from Spanish North Africa was more similar to the Iberian populations than the surrounding Moroccan populations, suggesting that the Strait of Gibraltar has not been acting as a strict barrier to dispersal while the Rif Mountains have. The Iberian Peninsula specimens showed a signature of demographic expansion before that which occurred in Morocco, but some of the assumptions related to the demographic parameters should be considered with caution due to the small genetic variation found. The high haplotype diversity found in Morocco implies higher demographic stability than in the Iberian Peninsula populations. These results do not, however, suggest a Moroccan origin for Iberian cicadas; but the most northwest region in Africa, such as Ceuta, might have acted as a southern refuge for Iberian cicadas during the most severe climatic conditions, from where they could expand north when climate improved. The separation of two subspecies within C. barbara (C. barbara lusitanica and C. barbara barbara) finds support with these results.

Metabolite characterization of a novel sedative drug, remimazolam in human plasma and urine using ultra high-performance liquid chromatography coupled with synapt high-definition mass spectrometry.

PubMed

Zhou, Ying; Hu, Pei; Jiang, Ji

2017-04-15

Remimazolam is a new chemical entity belonging to the benzodiazepine class of sedative drugs, which shows faster-acting onset and recovery than currently available short-acting sedatives. In the present study, ultra high performance liquid chromatography with synapt high-definition mass spectrometry method combined with MassLynx software was established to characterize metabolites of remimazolam in human plasma and urine. In total, 5 human metabolites were detected, including 3 phase I and 2 phase II metabolites. There was no novel human metabolite detected compared to that in rat. Hydrolysis, glucuronidation and oxidation were the major metabolic reactions. To our knowledge, this is the first report of the human metabolic profile of remimazolam. Copyright © 2017 Elsevier B.V. All rights reserved.

Measurements of atmospheric turbulence effects on tail rotor acoustics

NASA Technical Reports Server (NTRS)

Hagen, Martin J.; Yamauchi, Gloria K.; Signor, David B.; Mosher, Marianne

1994-01-01

Results from an outdoor hover test of a full-scale Lynx tail rotor are presented. The investigation was designed to further the understanding of the acoustics of an isolated tail rotor hovering out-of-ground effect in atmospheric turbulence, without the effects of the main rotor wake or other helicopter components. Measurements include simultaneous rotor performance, noise, inflow, and far-field atmospheric turbulence. Results with grid-generated inflow turbulence are also presented. The effects of atmospheric turbulence ingestion on rotor noise are quantified. In contradiction to current theories, increasing rotor inflow and rotor thrust were found to increase turbulence ingestion noise. This is the final report of Task 13A--Helicopter Tail Rotor Noise, of the NASA/United Kingdom Defense Research Agency cooperative Aeronautics Research Program.

Iberian Odonata distribution: data of the BOS Arthropod Collection (University of Oviedo, Spain)

PubMed Central

Torralba-Burrial, Antonio; Ocharan, Francisco J.

2013-01-01

Abstract Odonata are represented from the Iberian Peninsula by 79 species. However, there exists a significant gap in accessible knowledge about these species,especially regarding their distribution. This data paper describes the specimen-based Odonata data of the Arthropod Collection of the Department of Biología de Organismos y Sistemas (BOS), University of Oviedo, Spain. The specimens were mainly collected from the Iberian Peninsula (98.63% of the data records), especially the northern region. The earliest specimen deposited in the collection dates back to 1950, while the 1980’s and 2000’s are the best-represented time periods. Between 1950 and 2009, 16, 604 Odonata specimens were deposited and are documented in the dataset. Approximately 20% of the specimens belong to the families Coenagrionidae and Calopterygidae. Specimens include the holotype and paratypes of the Iberian subspecies Calopteryx haemorrhoidalis asturica Ocharan, 1983 and Sympetrum vulgatum ibericum Ocharan, 1985. The complete dataset is also provided in Darwin Core Archive format. PMID:23794917

Iberian Odonata distribution: data of the BOS Arthropod Collection (University of Oviedo, Spain).

PubMed

Torralba-Burrial, Antonio; Ocharan, Francisco J

2013-01-01

Odonata are represented from the Iberian Peninsula by 79 species. However, there exists a significant gap in accessible knowledge about these species,especially regarding their distribution. This data paper describes the specimen-based Odonata data of the Arthropod Collection of the Department of Biología de Organismos y Sistemas (BOS), University of Oviedo, Spain. The specimens were mainly collected from the Iberian Peninsula (98.63% of the data records), especially the northern region. The earliest specimen deposited in the collection dates back to 1950, while the 1980's and 2000's are the best-represented time periods. Between 1950 and 2009, 16, 604 Odonata specimens were deposited and are documented in the dataset. Approximately 20% of the specimens belong to the families Coenagrionidae and Calopterygidae. Specimens include the holotype and paratypes of the Iberian subspecies Calopteryx haemorrhoidalis asturica Ocharan, 1983 and Sympetrum vulgatum ibericum Ocharan, 1985. The complete dataset is also provided in Darwin Core Archive format.

Comparability of fish-based ecological quality assessments for geographically distinct Iberian regions.

PubMed

Segurado, P; Caiola, N; Pont, D; Oliveira, J M; Delaigue, O; Ferreira, M T

2014-04-01

In this work we compare two Iberian and a pan-European fish-based methods to assess ecological quality in rivers: the Fish-based Index of Biotic Integrity for Portuguese Wadeable Streams (F-IBIP), the Mediterranean Index of Biotic Integrity (IBIMED) and the pan-European Fish Index (EFI+). The results presented herein were developed in the context of the 2nd phase of the Intercalibration Exercise (IC), as required by the Water Frame Directive (WFD). The IC is aimed at ensuring comparability of the quality boundaries among the different WFD assessment methods developed by the Member States for each biological quality element. Although the two national assessment methods were developed for very distinct regions of Iberia (Western and Eastern Iberian Peninsula) they share the same methodological background: both are type-specific and guild-based multimetric indices. EFI+ is a multimetric guild-based model, but it is site-specific and uses a predictive modelling approach. The three indices were computed for all sites included in the Iberian Intercalibration database to allow the direct comparison, by means of linear regressions, of the resulting three quality values per site. The quality boundary harmonization between the two Iberian methods was only possible through an indirect comparison between the two indices, using EFI+ as a common metric. The three indices were also shown to be responsive to a common set of human induced pressures. This study highlights the need to develop general assessment methods adapted to wide geographical ranges with high species turnover to help intercalibrating assessment methods tailored for geographically more restricted regions. © 2013.

Ascent ability of brown trout, Salmo trutta, and two Iberian cyprinids − Iberian barbel, Luciobarbus bocagei, and northern straight-mouth nase, Pseudochondrostoma duriense − in a vertical slot fishway

USGS Publications Warehouse

Sanz-Ronda, Fco. Javier; Bravo-Cordoba, F.J.; Fuentes-Perez, J.F.; Castro-Santos, Theodore R.

2016-01-01

Passage performance of brown trout (Salmo trutta), Iberian barbel (Luciobarbus bocagei), and northern straight-mouth nase (Pseudochondrostoma duriense) was investigated in a vertical slot fishway in the Porma River (Duero River basin, Spain) using PIT telemetry. We analysed the effects of different fishway discharges on motivation and passage success. Both cyprinid species ascended the fishway easily, performing better than the trout despite their theoretically weaker swimming performance. Fishway discharge affected fish motivation although it did not clearly influence passage success. Observed results can guide design and operation criteria of vertical slot fishways for native Iberian fish.

A reappraisal of the Middle Triassic chirotheriid Chirotherium ibericus Navás, 1906 (Iberian Range NE Spain), with comments on the Triassic tetrapod track biochronology of the Iberian Peninsula

PubMed Central

Castanera, Diego; Gasca, José Manuel; Canudo, José Ignacio

2015-01-01

Triassic vertebrate tracks are known from the beginning of the 19th century and have a worldwide distribution. Several Triassic track ichnoassemblages and ichnotaxa have a restricted stratigraphic range and are useful in biochronology and biostratigraphy. The record of Triassic tracks in the Iberian Peninsula has gone almost unnoticed although more than 25 localities have been described since 1897. In one of these localities, the naturalist Longinos Navás described the ichnotaxon Chirotherium ibericus in 1906.The vertebrate tracks are in two sandy slabs from the Anisian (Middle Triassic) of the Moncayo massif (Zaragoza, Spain). In a recent revision, new, previously undescribed vertebrate tracks have been identified. The tracks considered to be C. ibericus as well as other tracks with the same morphology from both slabs have been classified as Chirotherium barthii. The rest of the tracks have been assigned to Chirotheriidae indet., Rhynchosauroides isp. and undetermined material. This new identification of C. barthii at the Navás site adds new data to the Iberian record of this ichnotaxon, which is characterized by the small size of the tracks when compared with the main occurrences of this ichnotaxon elsewhere. As at the Navás tracksite, the Anisian C. barthii-Rhynchosauroides ichnoassemblage has been found in other coeval localities in Iberia and worldwide. This ichnoassemblage belongs to the upper Olenekian-lower Anisian interval according to previous biochronological proposals. Analysis of the Triassic Iberian record of tetrapod tracks is uneven in terms of abundance over time. From the earliest Triassic to the latest Lower Triassic the record is very scarce, with Rhynchosauroides being the only known ichnotaxon. Rhynchosauroides covers a wide temporal range and gives poor information for biochronology. The record from the uppermost Lower Triassic to the Middle Triassic is abundant. The highest ichnodiversity has been reported for the Anisian with an

Characteristics of storms that contribute to extreme precipitation events over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Trigo, Ricardo; Ramos, Alexandre M.; Ordoñez, Paulina; Liberato, Margarida L. R.; Trigo, Isabel F.

2014-05-01

Floods correspond to one of the most deadly natural disasters in the Iberian Peninsula during the last century. Quite often these floods are associated to intense low pressure systems with an Atlantic origin. In recent years a number of episodes have been evaluated on a case-by-case approach, with a clear focus on extreme events, thus lacking a systematic assessment. In this study we focus on the characteristics of storms for the extended winter season (October to March) that are responsible for the most extreme rainfall events over large areas of the Iberian Peninsula. An objective method for ranking daily precipitation events during the extended winter is used based on the most comprehensive database of high resolution (0.2º latitude by 0.2º longitude) gridded daily precipitation dataset available for the Iberian Peninsula. The magnitude of an event is obtained after considering the total area affected as well as its intensity in every grid point (taking into account the daily normalised departure from climatology). Different precipitation rankings are studied considering the entire Iberian Peninsula, Portugal and also the six largest river basins in the Iberian Peninsula (Duero, Ebro, Tagus, Minho, Guadiana and Guadalquivir). Using an objective cyclone detecting and tracking scheme [Trigo, 2006] the storm track and characteristics of the cyclones were obtained using the ERA-Interim reanalyses for the 1979-2008 period. The spatial distribution of extratropical cyclone positions when the precipitation extremes occur will be analysed over the considered sub-domains (Iberia, Portugal, major river basins). In addition, we distinguish the different cyclone characteristics (lifetime, direction, minimum pressure, position, velocity, vorticity and radius) with significant impacts in precipitation over the different domains in the Iberian Peninsula. This work was partially supported by FEDER (Fundo Europeu de Desenvolvimento Regional) funds through the COMPETE (Programa

New insights into the genetic composition and phylogenetic relationship of wolves and dogs in the Iberian Peninsula.

PubMed

Pires, Ana Elisabete; Amorim, Isabel R; Borges, Carla; Simões, Fernanda; Teixeira, Tatiana; Quaresma, Andreia; Petrucci-Fonseca, Francisco; Matos, José

2017-06-01

This study investigates the gene pool of Portuguese autochthonous dog breeds and their wild counterpart, the Iberian wolf subspecies ( Canis lupus signatus ), using standard molecular markers. A combination of paternal and maternal molecular markers was used to investigate the genetic composition, genetic differentiation and genetic relationship of native Portuguese dogs and the Iberian wolf. A total of 196 unrelated dogs, including breed and village dogs from Portugal, and other dogs from Spain and North Africa, and 56 Iberian wolves (wild and captive) were analyzed for nuclear markers, namely Y chromosome SNPs, Y chromosome STR loci, autosomal STR loci, and a mitochondrial fragment of the control region I. Our data reveal new variants for the molecular markers and confirm significant genetic differentiation between Iberian wolf and native domestic dogs from Portugal. Based on our sampling, no signs of recent introgression between the two subspecies were detected. Y chromosome data do not reveal genetic differentiation among the analyzed dog breeds, suggesting they share the same patrilineal origin. Moreover, the genetic distinctiveness of the Iberian wolf from other wolf populations is further confirmed with the description of new mtDNA variants for this endemism. Our research also discloses new molecular markers for wolf and dog subspecies assignment, which might become particularly relevant in the case of forensic or noninvasive genetic studies. The Iberian wolf represents a relic of the once widespread wolf population in Europe and our study reveals that it is a reservoir of unique genetic diversity of the grey wolf, Canis lupus . These results stress the need for conservation plans that will guarantee the sustainability of this threatened top predator in Iberia.

Woody debris in north Iberian streams: influence of geomorphology, vegetation, and management.

PubMed

Diez, J R; Elosegi, A; Pozo, J

2001-11-01

The effect of stream geomorphology, maturity, and management of riparian forests on abundance, role, and mobility of wood was evaluated in 20 contrasting reaches in the Agüera stream catchment (northern Iberian Peninsula). During 1 year the volume of woody debris exceeding 1 cm in diameter was measured in all reaches. All large woody debris (phi > 5 cm) pieces were tagged, their positions mapped, and their subsequent changes noted. Volume of woody debris was in general low and ranged from 40 to 22,000 cm3 m-2; the abundance of debris dams ranged from 0 to 5.5 per 100 m of channel. Wood was especially rare and unstable in downstream reaches, or under harvested forests (both natural or plantations). Results stress that woody debris in north Iberian streams has been severely reduced by forestry and log removal. Because of the important influence of woody debris on structure and function of stream systems, this reduction has likely impacted stream communities. Therefore, efforts to restore north Iberian streams should include in-channel and riparian management practices that promote greater abundance and stability of large woody debris whenever possible.

The gastropod Phorcus sauciatus (Koch, 1845) along the north-west Iberian Peninsula: filling historical gaps

NASA Astrophysics Data System (ADS)

Rubal, Marcos; Veiga, Puri; Moreira, Juan; Sousa-Pinto, Isabel

2014-03-01

The intertidal gastropod Phorcus sauciatus is a subtropical grazer that reaches its northern boundary in the Iberian Peninsula. Distribution of P. sauciatus along the Iberian Peninsula shows, however, gaps in its distribution. The present study was aimed at detecting possible recent changes on the population structure and distribution of P. sauciatus along the north-west Atlantic coast of the Iberian Peninsula. To achieve this aim, we adopted a qualitative sampling design to explore the presence of P. sauciatus along a region within its historical gap of distribution (north Portuguese coast). In addition, a quantitative sampling design was adopted to test hypotheses about the abundance and size structure of P. sauciatus populations among regions with different historical records of its abundance and among shores with different exposure. Results showed that P. sauciatus was present along the north Portuguese coast. However, the abundance and size structure of the newly settled populations were significantly different to those of the historically recorded populations. Moreover, P. sauciatus was able to establish populations at sheltered shores. Considering these results, we propose models for the distribution of P. sauciatus along the Iberian Peninsula, based on effects of sea surface temperature, and to explain the size-frequency of their populations based on their density.

Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus).

PubMed

Reding, Dawn M; Bronikowski, Anne M; Johnson, Warren E; Clark, William R

2012-06-01

The potential for widespread, mobile species to exhibit genetic structure without clear geographic barriers is a topic of growing interest. Yet the patterns and mechanisms of structure--particularly over broad spatial scales--remain largely unexplored for these species. Bobcats occur across North America and possess many characteristics expected to promote gene flow. To test whether historical, topographic or ecological factors have influenced genetic differentiation in this species, we analysed 1 kb mtDNA sequence and 15 microsatellite loci from over 1700 samples collected across its range. The primary signature in both marker types involved a longitudinal cline with a sharp transition, or suture zone, occurring along the Great Plains. Thus, the data distinguished bobcats in the eastern USA from those in the western half, with no obvious physical barrier to gene flow. Demographic analyses supported a scenario of expansion from separate Pleistocene refugia, with the Great Plains representing a zone of secondary contact. Substructure within the two main lineages likely reflected founder effects, ecological factors, anthropogenic/topographic effects or a combination of these forces. Two prominent topographic features, the Mississippi River and Rocky Mountains, were not supported as significant genetic barriers. Ecological regions and environmental correlates explained a small but significant proportion of genetic variation. Overall, results implicate historical processes as the primary cause of broad-scale genetic differentiation, but contemporary forces seem to also play a role in promoting and maintaining structure. Despite the bobcat's mobility and broad niche, large-scale landscape changes have contributed to significant and complex patterns of genetic structure. © 2012 Blackwell Publishing Ltd.

Influence of physicochemical characteristics and high pressure processing on the volatile fraction of Iberian dry-cured ham.

PubMed

Martínez-Onandi, Nerea; Rivas-Cañedo, Ana; Ávila, Marta; Garde, Sonia; Nuñez, Manuel; Picon, Antonia

2017-09-01

The volatile fraction of 30 Iberian dry-cured hams of different physicochemical characteristics and the effect of high pressure processing (HPP) at 600MPa on volatile compounds were investigated. According to the analysis of variance carried out on the levels of 122 volatile compounds, intramuscular fat content influenced the levels of 8 benzene compounds, 5 carboxylic acids, 2 ketones, 2 furanones, 1 alcohol, 1 aldehyde and 1 sulfur compound, salt concentration influenced the levels of 1 aldehyde and 1 ketone, salt-in-lean ratio had no effect on volatile compounds, and water activity influenced the levels of 3 sulfur compounds, 1 alcohol and 1 aldehyde. HPP-treated samples of Iberian ham had higher levels of 4 compounds and lower levels of 31 compounds than untreated samples. A higher influence of HPP treatment on volatile compounds than physicochemical characteristics was observed for Iberian ham. Therefore, HPP treatment conditions should be optimized in order to diminish its possible effect on Iberian ham odor and aroma characteristics. Copyright © 2017 Elsevier Ltd. All rights reserved.

Multi-species genetic connectivity in a terrestrial habitat network.

PubMed

Marrotte, Robby R; Bowman, Jeff; Brown, Michael G C; Cordes, Chad; Morris, Kimberley Y; Prentice, Melanie B; Wilson, Paul J

2017-01-01

Habitat fragmentation reduces genetic connectivity for multiple species, yet conservation efforts tend to rely heavily on single-species connectivity estimates to inform land-use planning. Such conservation activities may benefit from multi-species connectivity estimates, which provide a simple and practical means to mitigate the effects of habitat fragmentation for a larger number of species. To test the validity of a multi-species connectivity model, we used neutral microsatellite genetic datasets of Canada lynx ( Lynx canadensis ), American marten ( Martes americana ), fisher ( Pekania pennanti ), and southern flying squirrel ( Glaucomys volans ) to evaluate multi-species genetic connectivity across Ontario, Canada. We used linear models to compare node-based estimates of genetic connectivity for each species to point-based estimates of landscape connectivity (current density) derived from circuit theory. To our knowledge, we are the first to evaluate current density as a measure of genetic connectivity. Our results depended on landscape context: habitat amount was more important than current density in explaining multi-species genetic connectivity in the northern part of our study area, where habitat was abundant and fragmentation was low. In the south however, where fragmentation was prevalent, genetic connectivity was correlated with current density. Contrary to our expectations however, locations with a high probability of movement as reflected by high current density were negatively associated with gene flow. Subsequent analyses of circuit theory outputs showed that high current density was also associated with high effective resistance, underscoring that the presence of pinch points is not necessarily indicative of gene flow. Overall, our study appears to provide support for the hypothesis that landscape pattern is important when habitat amount is low. We also conclude that while current density is proportional to the probability of movement per unit area

Ups and downs of space tourism development in 60 years from moon register to spaceshiptwo CRASH

NASA Astrophysics Data System (ADS)

Chang, Yi-Wei; Chern, Jeng-Shing

2016-10-01

In human imagination, dreams and expectations, the sequence of ;space tourism; has most likely been Moon tourism, Earth orbital tourism and then suborbital tourism. But the sequence in actual development is the reverse: first Earth suborbital tourism, then orbital tourism, and finally Moon tourism. In 1954, three years before the successful launch of the first human artificial satellite, the world's oldest travel company, Thomas Cook in Britain, initiated the ;Moon Register.; Enthusiasts could sign an option for a commercial trip to the Moon and the company guaranteed to provide tickets at the earliest possible date. Sixty years later on 31st October 2014, the first SpaceShip Two (SS2) of Virgin Galactic developed for commercial suborbital space tourism (SST) and scientific research crashed at the Mojave Desert in California during test flight. Although the first privately paid space tourist had traveled to the International Space Station in 2001, this was only for millionaires and not the general public. In 2004, although SpaceShipOne won the Ansari X prize and shed the first light on SST, the commercial SST operations originally planned to be realized in 2008 are now long overdue. The SS2 has been just one of the reusable suborbital launch vehicles developed for SST and other purposes, with others including the Lynx, Spaceplane and Dream Chaser. However a tragedy in which the SS2 crashed and caused the sacrifice of one senior test pilot alerted tourists that the long overdue of SST might still be a few years away. The purposes of this paper are to review and discuss the ups and downs of space tourism development in the 60 years from 1954 to 2014, and to look forward to get more clear future from the unveiling of second SS2 on 19th February 2016 and the continuous development of Lynx Mark I. However in any case, there are still many constraints including economy.

Lithospheric strength across the ocean-continent transition in the NW of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Martín-Velázquez, Silvia; Martín-González, Fidel

2014-05-01

The main objective of this work is to investigate the relation between the strength of the lithosphere and the observed pattern of seismicity across the ocean-continent transition in the NW margin of the Iberian Peninsula. The seismicity is diffuse in this intraplate area, far from the seismically active margin of the plate: the Eurasia-African plate boundary, where convergence occurs at a rate of 4-5mm/year. The earthquake epicentres are mainly limited to an E-W trending zone (onshore seismicity is more abundant than offshore), and most earthquakes occur at depths less than 30 km, however, offshore depths are up to 150 km). Moreover, one of the problems to unravel in this area is that the seismotectonic interpretations of the anomalous seismicity in the NW peninsular are contradictory. The temperature and strength profiles have been modelled in three domains along the non-volcanic rifted West Iberian Margin: 1) the oceanic lithosphere of the Iberian Abyssal Plain, 2) the oceanic lithosphere near the ocean-continent transition of the Galicia Bank, and 3) the continental lithosphere of the NW Iberian Massif. The average bathymetry and topography have been used to fit the thermal structures of the three types of lithospheres, given that the heat flow and heat production values show a varied range. The geotherms, together with the brittle and ductile rheological laws, have been used to calculate the strength envelopes in different stress regimes (compression, shear and tensile). The continental lithosphere-asthenosphere boundary is located at 123 km and several brittle-ductile transitions appear in the crust and the mantle. However, the oceanic lithospheres are thinner (110 km near the Galicia Bank and 87 km in the Iberian Abbysal Plain) and more simple (brittle behaviour in the crust and upper mantle). The earthquake distribution is best explained by lithospheres with dry compositions and shear or tensile stress regimes. These results are similar can be compared to

The reactivation of the SW Iberian passive margin: a brief review

NASA Astrophysics Data System (ADS)

Duarte, Joao; Rosas, Filipe; Terrinha, Pedro; Schellart, Wouter; Almeida, Pedro; Gutscher, Marc-André; Riel, Nicolas; Ribeiro, António

2016-04-01

On the morning of the 1st of November of 1755 a major earthquake struck offshore the Southwest Iberian margin. This was the strongest earthquake ever felt in Western Europe. The shake, fire and tsunami devastated Lisbon, was felt as far as Finland and had a profound impact on the thinkers of that time, in particular on the Enlightenment philosophers such as Voltaire, Rousseau and Kant. The Great Lisbon Earthquake is considered by many as the event that marks the birth of modern geosciences; and made of this region one of the most well studied areas in the world. After the 1755 earthquake, Kant and others authors wrote several treaties dealing with the causes and dynamics of earthquakes and tsunamis and were close to identify some key elements of what we now call plate tectonics. More than two hundred years later, in the year of 1969, the region was struck by another major earthquake. This was precisely during the period in which the theory of plate tectonics was being built. Geoscientists like Fukao (1973), Purdy (1975) and Mackenzie (1977) immediately focused their attention in the area. They suggested that these events were related with "transient" subduction of Africa below Iberia, along the East-West Azores-Gibraltar plate boundary. Several years later, Ribeiro (1989) suggested that instead of Africa being subducted below Iberia, it was the West Iberian passive margin that was being reactivated, a process that may, in time, lead to the formation of a new subduction zone. In the turning of the millennium, a subducting slab was imaged bellow the Gibraltar Straits, a remanent of the Western Mediterranean arc system that according to Gutscher et al. (2002) was related with ongoing subduction. Recently, it was proposed that a causal link between the Gibraltar subduction system and the reactivation of the SW Iberian margin might exist. In addition, the large-scale Africa-Eurasia convergence is inducing compressive stresses along the West Iberian margin. The margin

Design and Optimization of Multi-Pixel Transition-Edge Sensors for X-Ray Astronomy Applications

NASA Technical Reports Server (NTRS)

Smith, Stephen J.; Adams, Joseph S.; Bandler, Simon R.; Chervenak, James A.; Datesman, Aaron Michael; Eckart, Megan E.; Ewin, Audrey J.; Finkbeiner, Fred M.; Kelley, Richard L.; Kilbourne, Caroline A.;

Ultra high performance liquid chromatography coupled to quadruple time-of-flight with MS(E) technology used for qualitative analysis of non-volatile oxidation markers in sliced packed mushrooms (Agaricus Bisporus).

PubMed

Wrona, Magdalena; Pezo, Davinson; Canellas, Elena; Nerín, Cristina

2016-02-05

61 different non-volatile compounds were determined in Agaricus Bisporus sliced mushrooms using UHPLC/Q-TOF with MS(E) technology. Both positive and negative electrospray ionization were applied. Chemical profile of three parts of mushroom was created: cap, gills and stipe. The analysed mushrooms were oxidized to identify the non-volatile markers in their parts. MarkerLynx(®) was proposed as a powerful tool to distinguish mushrooms purchased in different countries (Spain and Portugal) by determining their non-volatile markers. Some metabolites were identified. Surprisingly a mix of polyethylene glycols (PEGs) was detected in cap and gills of mushrooms. Whole mushrooms were considered as vegetable resistant to migration from packaging compounds. Additionally migration tests were performed to determine the source of migrating compounds. Copyright © 2016 Elsevier B.V. All rights reserved.

Searching the SOHO online catalogs

NASA Technical Reports Server (NTRS)

Thompson, William; Yurow, Ron

1994-01-01

The SOHO on-line catalogs will contain information about the observations from several made or planned campaigns, that must be available to scientists who wish to use SOHO data. The World Wide Web (WWW) was chosen as the interface to the SOHO on-line catalogs, because it is easy to use, well suited to a geographically distributed user community, and freely available. Through the use of a forms-capable WWW client such as Mosaic or Lynx, a scientist will be able to browse through the catalogs of observations in a very simple, self explanatory way. Data files can then be selected from the returned lists for either immediate transferring or sending on tape by mail, with appropriate checks for whether data is in the public domain or not.

Behavioral profiles of the captive juvenile whooping crane as an indicator of post-release survival

USGS Publications Warehouse

Kreger, M.D.; Hatfield, J.S.; Estevez, I.; Gee, G.F.; Clugston, D.A.

2006-01-01

Predation by bobcats (Lynx rufus) is the major cause of mortality in captive-reared whooping cranes (Grus americana) released into the wild to establish a nonmigratory flock in Florida. This study investigated whether rearing methods (parent-rearing, hand-rearing, or hand-rearing with exercise) of cranes, and behaviors observed in birds either before or shortly after release in the wild, are associated with survival after release. Rearing methods did not affect survival first year post-release, which was 55 ? 8% in 2 yr (1999 and 2000). Logistic regression revealed, however, that foraging bouts (+), walking bouts (-), and body weight (-) before release, and nonvigilant bouts (-) after release were significantly associated with survival. These results suggest that post-release survival of whooping cranes might be increased by rearing techniques that promote foraging.

Effect of muscle type and frozen storage on the quality parameters of Iberian restructured meat preparations.

PubMed

Antequera, Teresa; Pérez-Palacios, Trinidad; Rodas, Elena; Rodríguez, Mar; Córdoba, Juan J

2014-10-01

The main objective of this study was to evaluate the effect of muscle type and frozen storage on the quality of restructured meat preparations from undervalued Iberian muscle to make use of meat from a high-quality and natural pig production system. The effect of two muscle types (i.e. white-glycolytic (W) and red-oxidative (R)) and frozen storage (lasting 0, 30, 60 and 90 days) on quality characteristics were assessed. Significant differences were found between the W and R Iberian restructured preparations in most physicochemical and some colour, texture and sensory traits, and in the fatty acid profile and oxidative measurements, suggesting that the R muscles are more suitable; however, the microbial contamination should be reduced. Frozen storage reduced but did not eliminate the initial microbial contamination, and it enhanced some quality traits in the Iberian restructured preparations, i.e. increased a* values, cohesiveness and juiciness and decreased adhesiveness and pastiness, without negatively affecting any parameter. Thus, frozen Iberian restructured preparations are recommended to be commercialized. In addition, the implementation or revision of Hazard Analysis and Critical Control Point is recommended to reduce microbial contamination. © The Author(s) 2013 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

Modelling larval dispersal dynamics of common sole (Solea solea) along the western Iberian coast

NASA Astrophysics Data System (ADS)

Tanner, Susanne E.; Teles-Machado, Ana; Martinho, Filipe; Peliz, Álvaro; Cabral, Henrique N.

2017-08-01

Individual-based coupled physical-biological models have become the standard tool for studying ichthyoplankton dynamics and assessing fish recruitment. Here, common sole (Solea solea L.), a flatfish of high commercial importance in Europe was used to evaluate transport of eggs and larvae and investigate the connectivity between spawning and nursery areas along the western Iberian coast as spatio-temporal variability in dispersal and recruitment patterns can result in very strong or weak year-classes causing large fluctuations in stock size. A three-dimensional particle tracking model coupled to Regional Ocean Modelling System model was used to investigate variability of sole larvae dispersal along the western Iberian coast over a five-year period (2004-2009). A sensitivity analysis evaluating: (1) the importance of diel vertical migrations of larvae and (2) the size of designated recruitment areas was performed. Results suggested that connectivity patterns of sole larvae dispersal and their spatio-temporal variability are influenced by the configuration of the coast with its topographical structures and thus the suitable recruitment area available as well as the wind-driven mesoscale circulation along the Iberian coast.

Long-term changes in composition and distribution patterns in the Iberian herpetofaunal communities since the latest Pleistocene

NASA Astrophysics Data System (ADS)

Bisbal-Chinesta, Josep Francesc; Blain, Hugues-Alexandre

2018-03-01

The climate has undergone significant changes since the end of the Last Glacial Maximum and in the course of the Holocene, parallel to important cultural transformations and migrations in the human communities. The faunal record has also suffered the effects of climate change. Amphibians and reptiles in particular have been shown to be highly sensitive because they are very susceptible to temperature alterations due to their ectothermy. This research presents the first approach to the Iberian paleobiogeography of the different species of amphibians and reptiles from the Late Pleistocene (MIS3) to present times, based on a comparative synthesis of the latest research published in recent years and the fossil record of the 58 archaeo-paleontological sites with significant assemblages. The paleoherpetofaunal associations make it possible to establish two major biotic regions during the Late Pleistocene. The first biotic region was located in the center and south of the Iberian Peninsula, with thermophilic species as the most representative taxa. The second biotic region was formed by the Atlantic-Cantabrian facade and the northeast Iberian area, dominated by hygrophilous and Euro-Siberian species, with an absence of Mediterranean species. After the Last Glacial Maximum there was an unprecedented concurrence in the northern Iberian Peninsula of autochthonous taxa from that area with thermophilic species. In the early Holocene, new species with no previous record in the Iberian Peninsula entered northern Iberia from eastern Mediterranean refugia. Finally, the introduction of North African species was the last significant biogeographical change during the Middle-Late Holocene.

Spatial and temporal characteristics of wildfire activity over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Calado, Teresa; DaCamara, Carlos C.; Ermida, Sofia; Trigo, Isabel.

2013-04-01

According to the official reports of the European Commission, during the period 1980-2010 the Iberian Peninsula has contributed to 60% of the total burned area of 14 620 968 ha, which was recorded in the five Southern Member States with higher wildfire activity (Portugal, Spain, France, Italy and Greece). The aim of the present study is to assess fire activity over the Iberian Peninsula based on time series of hot spots extracted from the MODIS global daily active fire product (MOD14A1 and MYD14A1). This dataset, which contains the coordinates of MODIS pixels where fire events were identified together with the respective date and quality indicators, covers the period from July 2002 to August 2012. It is first shown that overall hot spot activity exhibits power law behaviour. A spatial analysis is then undertaken based on land cover information as obtained from Globcover - an ESA initiative relying on observations from the 300m MERIS on board the ENVISAT. Temporal analysis of hot spot activity is also performed based on daily information about meteorological conditions provided by the European Centre for Medium-Range Weather Forecasts. Results obtained allow defining a set of fire regions over the Iberian Peninsula determined essentially by the respective land cover type, which present coherent statistical behaviour in space and time. Finally, models of fire risk are developed for each region and their potential operational use by forest and civil protection services is discussed.

Genetic diversity and structure of Iberian Peninsula cowpeas compared to world-wide cowpea accessions using high density SNP markers.

PubMed

Carvalho, Márcia; Muñoz-Amatriaín, María; Castro, Isaura; Lino-Neto, Teresa; Matos, Manuela; Egea-Cortines, Marcos; Rosa, Eduardo; Close, Timothy; Carnide, Valdemar

2017-11-21

Cowpea (Vigna unguiculata L. Walp) is an important legume crop due to its high protein content, adaptation to heat and drought and capacity to fix nitrogen. Europe has a deficit of cowpea production. Knowledge of genetic diversity among cowpea landraces is important for the preservation of local varieties and is the basis to obtain improved varieties. The aims of this study were to explore diversity and the genetic structure of a set of Iberian Peninsula cowpea accessions in comparison to a worldwide collection and to infer possible dispersion routes of cultivated cowpea. The Illumina Cowpea iSelect Consortium Array containing 51,128 SNPs was used to genotype 96 cowpea accessions including 43 landraces and cultivars from the Iberian Peninsula, and 53 landraces collected worldwide. Four subpopulations were identified. Most Iberian Peninsula accessions clustered together with those from other southern European and northern African countries. Only one accession belonged to another subpopulation, while two accessions were 'admixed'. A lower genetic diversity level was found in the Iberian Peninsula accessions compared to worldwide cowpeas. The genetic analyses performed in this study brought some insights into worldwide genetic diversity and structure and possible dispersion routes of cultivated cowpea. Also, it provided an in-depth analysis of genetic diversity in Iberian Peninsula cowpeas that will help guide crossing strategies in breeding programs.

Downscaling of Global Climate Change Estimates to Regional Scales: An Application to Iberian Rainfall in Wintertime.

NASA Astrophysics Data System (ADS)

von Storch, Hans; Zorita, Eduardo; Cubasch, Ulrich

1993-06-01

A statistical strategy to deduct regional-scale features from climate general circulation model (GCM) simulations has been designed and tested. The main idea is to interrelate the characteristic patterns of observed simultaneous variations of regional climate parameters and of large-scale atmospheric flow using the canonical correlation technique.The large-scale North Atlantic sea level pressure (SLP) is related to the regional, variable, winter (DJF) mean Iberian Peninsula rainfall. The skill of the resulting statistical model is shown by reproducing, to a good approximation, the winter mean Iberian rainfall from 1900 to present from the observed North Atlantic mean SLP distributions. It is shown that this observed relationship between these two variables is not well reproduced in the output of a general circulation model (GCM).The implications for Iberian rainfall changes as the response to increasing atmospheric greenhouse-gas concentrations simulated by two GCM experiments are examined with the proposed statistical model. In an instantaneous `2 C02' doubling experiment, using the simulated change of the mean North Atlantic SLP field to predict Iberian rainfall yields, there is an insignificant increase of area-averaged rainfall of 1 mm/month, with maximum values of 4 mm/month in the northwest of the peninsula. In contrast, for the four GCM grid points representing the Iberian Peninsula, the change is 10 mm/month, with a minimum of 19 mm/month in the southwest. In the second experiment, with the IPCC scenario A ("business as usual") increase Of C02, the statistical-model results partially differ from the directly simulated rainfall changes: in the experimental range of 100 years, the area-averaged rainfall decreases by 7 mm/month (statistical model), and by 9 mm/month (GCM); at the same time the amplitude of the interdecadal variability is quite different.

Extreme precipitation events in the Iberian Peninsula and its association with Atmospheric Rivers

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Liberato, Margarida L. R.; Trigo, Ricardo M.

2015-04-01

Extreme precipitation events in the Iberian Peninsula during the winter half of the year have major socio-economic impacts associated with floods, landslides, extensive property damage and life losses. In recent years, a number of works have shed new light on the role played by Atmospheric Rivers (ARs) in the occurrence of extreme precipitation events in both Europe and USA. ARs are relatively narrow regions of concentrated WV responsible for horizontal transport in the lower atmosphere corresponding to the core section of the broader warm conveyor belt occurring over the oceans along the warm sector of extra-tropical cyclones. Over the North Atlantic ARs are usually W-E oriented steered by pre-frontal low level jets along the trailing cold front and subsequently feed the precipitation in the extra-tropical cyclones. It was shown that more than 90% of the meridional WV transport in the mid-latitudes occurs in the AR, although they cover less than 10% of the area of the globe. The large amount of WV that is transported can lead to heavy precipitation and floods. An automated ARs detection algorithm is used for the North Atlantic Ocean Basin allowing the identification and a comprehensive characterization of the major AR events that affected the Iberian Peninsula over the 1948-2012 period. The extreme precipitation days in the Iberian Peninsula were assessed recently by us (Ramos et al., 2014) and their association (or not) with the occurrence of AR is analyzed in detail here. The extreme precipitation days are ranked by their magnitude and are obtained after considering 1) the area affected and 2) the precipitation intensity. Different rankings are presented for the entire Iberian Peninsula, Portugal and also for the six largest Iberian river basins (Minho, Duero, Tagus, Guadiana, Guadalquivir and Ebro) covering the 1950-2008 period (Ramos et al., 2014). Results show that the association between ARs and extreme precipitation days in the western domains (Portugal

Long-term vegetation activity trends in the Iberian Peninsula and The Balearic Islands using high spatial resolution NOAA-AVHRR data (1981 - 2015).

NASA Astrophysics Data System (ADS)

Martin-Hernandez, Natalia; Vicente-Serrano, Sergio; Azorin-Molina, Cesar; Begueria-Portugues, Santiago; Reig-Gracia, Fergus; Zabalza-Martínez, Javier

2017-04-01

We have analysed trends in the Normalized Difference Vegetation Index (NDVI) in the Iberian Peninsula and The Balearic Islands over the period 1981 - 2015 using a new high resolution data set from the entire available NOAA - AVHRR images (IBERIAN NDVI dataset). After a complete processing including geocoding, calibration, cloud removal, topographic correction and temporal filtering, we obtained bi-weekly time series. To assess the accuracy of the new IBERIAN NDVI time-series, we have compared temporal variability and trends of NDVI series with those results reported by GIMMS 3g and MODIS (MOD13A3) NDVI datasets. In general, the IBERIAN NDVI showed high reliability with these two products but showing higher spatial resolution than the GIMMS dataset and covering two more decades than the MODIS dataset. Using the IBERIAN NDVI dataset, we analysed NDVI trends by means of the non-parametric Mann-Kendall test and Theil-Sen slope estimator. In average, vegetation trends in the study area show an increase over the last decades. However, there are local spatial differences: the main increase has been recorded in humid regions of the north of the Iberian Peninsula. The statistical techniques allow finding abrupt and gradual changes in different land cover types during the analysed period. These changes are related with human activity due to land transformations (from dry to irrigated land), land abandonment and forest recovery.

Taeniid species of the Iberian wolf (Canis lupus signatus) in Portugal with special focus on Echinococcus spp.☆

PubMed Central

Guerra, Diogo; Armua-Fernandez, Maria Teresa; Silva, Marta; Bravo, Inês; Santos, Nuno; Deplazes, Peter; Carvalho, Luís Manuel Madeira de

2012-01-01

Taeniid species represent relevant pathogens in human and animals, circulating between carnivorous definitive hosts and a variety of mammalian intermediate hosts. In Portugal, however, little is known about their occurrence and life cycles, especially in wild hosts. An epidemiological survey was conducted to clarify the role of the Iberian wolf as a definitive host for taeniid species, including Echinococcus spp. Wolf fecal samples (n = 68) were collected from two regions in Northern Portugal. Taeniid eggs were isolated through a sieving-flotation technique, and species identification was performed using multiplex-PCR followed by sequencing of the amplicons. Taenia hydatigena (in 11.8% of the samples), Taenia serialis (5.9%), Taenia pisiformis (2.9%), Taenia polyacantha (1.5%) and Echinococcus intermedius (Echinococcus granulosus ‘pig strain’, G7) (1.5%) were detected. This is the first study to characterize the taeniid species infecting the Portuguese Iberian wolf, with the first records of T. polyacantha and E. intermedius in this species in the Iberian Peninsula. Iberian wolves can be regarded as relevant hosts for the maintenance of the wild and synanthropic cycles of taeniids in Portugal. PMID:24533315

Recent decadal trends in Iberian water vapour: GPS analysis and WRF process study

NASA Astrophysics Data System (ADS)

Miranda, Pedro M. A.; Nogueira, Miguel; Semedo, Alvaro; Benevides, Pedro; Catalao, Joao; Costa, Vera

2016-04-01

A 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. The same analysis with ERA-Interim reanalysis data, which was used to force the WRF simulations, does not reveal the same signal in PWV, and indeed correlates poorly with the GPS observations, indicating that the data assimilation process makes the water vapour data in reanalysis unusable for climate change purposes. The good correlation between the WRF simulated data and GPS observations allow for a detailed analysis of the processes involved in the evolution of the PWV field. Akcnowledgements: Study done within FCT Grant RECI/GEO-MET/0380/2012, financially supported by FCT Grant UID/ GEO/50019/2013-IDL Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http

Sensitivity of two Iberian lakes to North Atlantic atmospheric circulation modes

NASA Astrophysics Data System (ADS)

Hernández, Armand; Trigo, Ricardo M.; Pla-Rabes, Sergi; Valero-Garcés, Blas L.; Jerez, Sonia; Rico-Herrero, Mayte; Vega, José C.; Jambrina-Enríquez, Margarita; Giralt, Santiago

2015-12-01

The North Atlantic Oscillation (NAO) exerts a major influence on the climate of the North Atlantic region. However, other atmospheric circulation modes (ACMs), such as the East Atlantic (EA) and Scandinavian (SCAND) patterns, also play significant roles. The dynamics of lakes on the Iberian Peninsula are greatly controlled by climatic parameters, but their relationship with these various ACMs has not been investigated in detail. In this paper, we analyze monthly meteorological and limnological long-term datasets (1950-2011 and 1992-2011, respectively) from two lakes on the northern and central Iberian Peninsula (Sanabria and Las Madres) to develop an understanding of the seasonal sensitivity of these freshwater systems to the NAO, EA and SCAND circulation modes. The limnological variability within Lake Sanabria is primarily controlled by fluctuations in the seasonal precipitation and wind, and the primary ACMs associated with the winter limnological processes are the NAO and the SCAND modes, whereas only the EA mode appears to weakly influence processes during the summer. However, Lake Las Madres is affected by precipitation, wind and, to a lesser extent, temperature, whereas the ACMs have less influence. Therefore, we aim to show that the lakes of the Iberian Peninsula are sensitive to these ACMs. The results presented here indicate that the lake dynamics, in some cases, have a higher sensitivity to variations in the ACMs than single local meteorological variables. However, certain local features, such as geography, lake morphology and anthropic influences, are crucial to properly record the signals of these ACMs.

Pleistocene and Holocene Iberian flora: a complete picture and review

NASA Astrophysics Data System (ADS)

González Sampériz, Penélope

2010-05-01

A detailed analysis of the location and composition of Iberian vegetation types during the whole Pleistocene and Holocene periods shows a complex patched landscape with persistence of different types of ecosystems, even during glacial times. In addition, recent, high-resolution palaeoecological records are changing the traditional picture of post-glacial vegetation succession in the Iberian Peninsula. The main available charcoal and pollen sequences include, coniferous and deciduous forest, steppes, shrublands, savannahs and glacial refugia during the Pleistocene for Meso-thermophytes (phytodiversity reservoirs), in different proportions. This panorama suggests an environmental complexity that relates biotic responses to climate changes forced by Milankovitch cycles, suborbital forcings and by the latitudinal and physiographic particularities of the Iberian Peninsula. Thus, many factors are critical in the course of vegetational developments and strong regional differences are observed since the Early Pleistocene. Currently, the flora of Iberia is located in two biogeographical/climatic regions: the Eurosiberian and the Mediterranean. The first one includes northern and northwestern areas of the peninsula, where post-glacial responses of vegetation are very similar to Central Europe, although with some particularities due to its proximity to both the Atlantic Ocean and the Mediterranean region. The second one comprises the main territory of Iberia and shows more complex patterns and singularities, now and in the past. Steppe landscapes dominated extensive areas over all the territory during the cold spells of the Quaternary, especially during the Late Pleistocene up to the Last Glacial Maximum, but differences in composition of the dominant taxa (Compositae versus Artemisia) are observed since the Early Pleistocene, probably related to moisture regional gradients. Coastal shelves and intramountainous valleys, even in continental areas, are spots of floristic

Climatic record of the Iberian peninsula from lake Moncortes' sediments

NASA Astrophysics Data System (ADS)

Cao, Min; Huguet, Carme; Rull, Valenti; Valero, Blas; Rosell-Mele, Antoni

2014-05-01

Climatic record of the Iberian peninsula from lake Moncortes' sediments Min Cao1, Carme Huguet1, Valenti Rull2, Blas L. Valero-Garces3, Antoni Rosell-Melé1,4 1Institut de Ciència i Tecnologia Ambientals (ICTA), Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain; 2Institut de Botanic de Barcelona (CSIC), Passeig del Migdia s/n, 08038, Barcelona, Spain, 3 Instituto Pirenaico de Ecologıa (CSIC), Avda. Montañana 1005, 50059 Zaragoza, Spain, 4Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Catalonia, Spain. The continuing buildup of industrial greenhouse gases in the atmosphere and concomitant increase in global temperatures has made much of the world's society aware that decades to centuries of environmental change lie ahead, and that these will have profound economic, political and societal impacts. The Iberian Peninsula lies in the boundary between tropical and subtropical climates and seems to amplify the climatic signals form the northern hemisphere through both atmospheric and water circulation feedbacks, making it an ideal site to monitor Northern hemisphere climate changes. This extreme sensitivity to climatic changes also makes the Iberian Peninsula extremely vulnerable to future climate changes. This is why understanding sensitivity to climate change and the consequences it will have on both climate and the hydrological cycle is key to implement preventive measures. The aim of our study is to come up with a high resolution quantitative reconstruction of climate variability (temperature, production and precipitation) in the Iberian Peninsula from lake sediments. We also want to establish the relation between those changes and the ones observed in both ice cores from Greenland and paleotemperature records from marine sediments of the continental Iberian margin. For these reasons we sampled a core in Moncortes (42.3N, 0.99E), a lake of karstic origin with an average depth of 25m and an area of 0

Meta-Analysis of Mitochondrial DNA Variation in the Iberian Peninsula.

PubMed

Barral-Arca, Ruth; Pischedda, Sara; Gómez-Carballa, Alberto; Pastoriza, Ana; Mosquera-Miguel, Ana; López-Soto, Manuel; Martinón-Torres, Federico; Álvarez-Iglesias, Vanesa; Salas, Antonio

2016-01-01

The Iberian Peninsula has been the focus of attention of numerous studies dealing with mitochondrial DNA (mtDNA) variation, most of them targeting the control region segment. In the present study we sequenced the control region of 3,024 Spanish individuals from areas where available data were still limited. We also compiled mtDNA haplotypes from the literature involving 4,588 sequences and 28 population groups or small regions. We meta-analyzed all these data in order to shed further light on patterns of geographic variation, taking advantage of the large sample size and geographic coverage, in contrast with the atomized sampling strategy of previous work. The results indicate that the main mtDNA haplogroups show primarily clinal geographic patterns across the Iberian geography, roughly along a North-South axis. Haplogroup HV0 (where haplogroup U is nested) is more prevalent in the Franco Cantabrian region, in good agreement with previous findings that identified this area as a climate refuge during the Last Glacial Maximum (LGM), prior to a subsequent demographic re-expansion towards Central Europe and the Mediterranean. Typical sub-Saharan and North African lineages are slightly more prevalent in South Iberia, although at low frequencies; this pattern has been shaped mainly by the transatlantic slave trade and the Arab invasion of the Iberian Peninsula. The results also indicate that summary statistics that aim to measure molecular variation, or AMOVA, have limited sensitivity to detect population substructure, in contrast to patterns revealed by phylogeographic analysis. Overall, the results suggest that mtDNA variation in Iberia is substantially stratified. These patterns might be relevant in biomedical studies given that stratification is a common cause of false positives in case-control mtDNA association studies, and should be also considered when weighting the DNA evidence in forensic casework, which is strongly dependent on haplotype frequencies.

Meta-Analysis of Mitochondrial DNA Variation in the Iberian Peninsula

PubMed Central

Barral-Arca, Ruth; Pischedda, Sara; Gómez-Carballa, Alberto; Pastoriza, Ana; Mosquera-Miguel, Ana; López-Soto, Manuel; Martinón-Torres, Federico; Álvarez-Iglesias, Vanesa; Salas, Antonio

2016-01-01

The Iberian Peninsula has been the focus of attention of numerous studies dealing with mitochondrial DNA (mtDNA) variation, most of them targeting the control region segment. In the present study we sequenced the control region of 3,024 Spanish individuals from areas where available data were still limited. We also compiled mtDNA haplotypes from the literature involving 4,588 sequences and 28 population groups or small regions. We meta-analyzed all these data in order to shed further light on patterns of geographic variation, taking advantage of the large sample size and geographic coverage, in contrast with the atomized sampling strategy of previous work. The results indicate that the main mtDNA haplogroups show primarily clinal geographic patterns across the Iberian geography, roughly along a North-South axis. Haplogroup HV0 (where haplogroup U is nested) is more prevalent in the Franco Cantabrian region, in good agreement with previous findings that identified this area as a climate refuge during the Last Glacial Maximum (LGM), prior to a subsequent demographic re-expansion towards Central Europe and the Mediterranean. Typical sub-Saharan and North African lineages are slightly more prevalent in South Iberia, although at low frequencies; this pattern has been shaped mainly by the transatlantic slave trade and the Arab invasion of the Iberian Peninsula. The results also indicate that summary statistics that aim to measure molecular variation, or AMOVA, have limited sensitivity to detect population substructure, in contrast to patterns revealed by phylogeographic analysis. Overall, the results suggest that mtDNA variation in Iberia is substantially stratified. These patterns might be relevant in biomedical studies given that stratification is a common cause of false positives in case-control mtDNA association studies, and should be also considered when weighting the DNA evidence in forensic casework, which is strongly dependent on haplotype frequencies. PMID

Pleistocene leopards in the Iberian Peninsula: New evidence from palaeontological and archaeological contexts in the Mediterranean region

NASA Astrophysics Data System (ADS)

Sanchis, Alfred; Tormo, Carmen; Sauqué, Víctor; Sanchis, Vicent; Díaz, Rebeca; Ribera, Agustí; Villaverde, Valentín

2015-09-01

This study analyses the fossil record of leopards in the Iberian Peninsula. According to the systematic and morphometric features of new remains, identified mainly in Late Pleistocene palaeontological and archaeological sites of the Mediterranean region, they can be attributed to Panthera pardus Linnaeus 1758. The findings include the most complete leopard skeleton from the Iberian Peninsula and one of the most complete in Europe, found in a chasm (Avenc de Joan Guitón) south of Valencia. The new citations and published data are used to establish the leopard's distribution in the Iberian Peninsula, showing its maximum development during the Late Pleistocene. Some references suggest that the species survived for longer here (Lateglacial-Early Holocene) than in other parts of Europe. Finally, the contexts of appearance and origin of leopard remains are described and the processes of interaction with prehistoric human groups are assessed.

Microsatellite variation in Donax trunculus from the Iberian Peninsula, with particular attention to Galician estuaries (NW Spain)

NASA Astrophysics Data System (ADS)

Nantón, A.; Arias-Pérez, A.; Freire, R.; Fernández-Pérez, J.; Nóvoa, S.; Méndez, J.

2017-10-01

Genetic variation and population structure information is essential for conservation and stock management policies. The wedge clam Donax trunculus is an important fishing resource in the Iberian Peninsula and in some areas, such as the northwestern Spain, wild stocks have decreased greatly. Despite this, information is mainly from the southwestern Atlantic to the northwestern Mediterranean of the Iberian Peninsula. In this study, fifteen microsatellite loci were examined at 17 localities along the Iberian Peninsula to characterize its genetic diversity and population structure. Particular attention was paid to the northwestern Atlantic area, and to test if the pattern previously described for this species is confirmed when localities distributed across the Atlantic coast are included and different microsatellite markers are used. All localities displayed similar allelic richness values and heterozygosity levels but when genetic diversity levels were compared among groups of localities, tests were significant and samples from the northwestern area (Galicia) showed the lowest values. The analysis of population structure indicated that localities from the Atlantic coast are genetically homogeneous although some samples showed significant pairwise Fst values. These values were low and Bayesian analysis of genetic differentiation did not show a consistent structure along the Atlantic coast of the Iberian Peninsula. However, Atlantic samples were genetically different from those located in Mediterranean coast, which may be explained by the existence of the Almeria-Oran front. Moreover, Fuengirola, locality situated in the Alboran Sea between the Strait of Gibraltar and Mediterranean Sea, showed significant differences from all remaining localities included in the study. Overall, the data showed the existence of genetic homogeneity along the Atlantic coast of the Iberian Peninsula and support the three management units (Atlantic Ocean, the Alboran Sea and the northwestern

Advantages and Challenges of 10-Gbps Transmission on High-Density Interconnect Boards

NASA Astrophysics Data System (ADS)

Yee, Chang Fei; Jambek, Asral Bahari; Al-Hadi, Azremi Abdullah

2016-06-01

This paper provides a brief introduction to high-density interconnect (HDI) technology and its implementation on printed circuit boards (PCBs). The advantages and challenges of implementing 10-Gbps signal transmission on high-density interconnect boards are discussed in detail. The advantages (e.g., smaller via dimension and via stub removal) and challenges (e.g., crosstalk due to smaller interpair separation) of HDI are studied by analyzing the S-parameter, time-domain reflectometry (TDR), and transmission-line eye diagrams obtained by three-dimensional electromagnetic modeling (3DEM) and two-dimensional electromagnetic modeling (2DEM) using Mentor Graphics HyperLynx and Keysight Advanced Design System (ADS) electronic computer-aided design (ECAD) software. HDI outperforms conventional PCB technology in terms of signal integrity, but proper routing topology should be applied to overcome the challenge posed by crosstalk due to the tight spacing between traces.

Improving the Multi-Wavelength Capability of Chandra Large Programs

NASA Astrophysics Data System (ADS)

Pacucci, Fabio

2017-09-01

In order to fully exploit the joint Chandra/JWST/HST ventures to detect faint sources, we urgently need an advanced matching algorithm between optical/NIR and X-ray catalogs/images. This will be of paramount importance in bridging the gap between upcoming optical/NIR facilities (JWST) and later X-ray ones (Athena, Lynx). We propose to develop an advanced and automated tool to improve the identification of Chandra X-ray counterparts detected in deep optical/NIR fields based on T-PHOT, a software widely used in the community. The developed code will include more than 20 years in advancements of X-ray data analysis and will be released to the public. Finally, we will release an updated catalog of X-ray sources in the CANDELS regions: a leap forward in our endeavor of charting the Universe.

Early-type galaxies: mass-size relation at z ˜ 1.3 for different environments

NASA Astrophysics Data System (ADS)

Raichoor, A.; Mei, S.; Stanford, S. A.; Holden, B. P.; Nakata, F.; Rosati, P.; Shankar, F.; Tanaka, M.; Ford, H.; Huertas-Company, M.; Illingworth, G.; Kodama, T.; Postman, M.; Rettura, A.; Blakeslee, J. P.; Demarco, R.; Jee, M. J.; White, R. L.

2011-12-01

We combine multi-wavelength data of the Lynx superstructure and GOODS/CDF-S to build a sample of 75 visually selected early-type galaxies (ETGs), spanning different environments (cluster/group/field) at z ˜ 1.3. By estimating their mass, age (SED fitting, with a careful attention to the stellar population model used) and size, we are able to probe the dependence on the environment of the mass-size relation. We find that, for ETGs with 10^{10} < M / M_⊙ < 10^{11.5}, (1) the mass-size relation in the field did not evolve overall from z ˜ 1.3 to present; (2) the mass-size relation in cluster/group environments at z ˜ 1.3 lies at smaller sizes than the local mass-size relation (R_{e,z ˜ 1.3}/R_{e,z = 0} ˜ 0.6-0.8).

Experimental and numerical study of the British Experimental Rotor Programme blade

NASA Technical Reports Server (NTRS)

Brocklehurst, Alan; Duque, Earl P. N.

1990-01-01

Wind-tunnel tests on the British Experimental Rotor Programme (BERP) tip are described, and the results are compared with computational fluid dynamics (CFD) results. The test model was molded using the Lynx-BERP blade tooling to provide a semispan, cantilever wing comprising the outboard 30 percent of the rotor blade. The tests included both surface-pressure measurements and flow visualization to obtain detailed information of the flow over the BERP tip for a range of angles of attack. It was observed that, outboard of the notch, favorable pressure gradients exist which ensure attached flow, and that the tip vortex also remains stable to large angles of attack. On the rotor, these features yield a very gradual break in control loads when the retreating-blade limit is eventually reached. Computational and experimental results were generally found to be in good agreement.

Effects of cadmium exposure on Iberian ribbed newt (Pleurodeles waltl) testes

PubMed Central

Hirako, Ayano; Takeoka, Yuki; Hayashi, Toshinori; Takeuchi, Takashi; Furukawa, Satoshi; Sugiyama, Akihiko

2017-01-01

To characterize the histomorphologic effects of cadmium on adult newt testes, male Iberian ribbed newts (6 months post-hatching) were intraperitoneally exposed to a single dose of 50 mg/kg of cadmium, with histologic analysis of the testes at 24, 48, 72, and 96 h. Beginning 24 h after cadmium exposure, apoptosis of spermatogonia and spermatocytes was observed, and congestion was observed in the interstitial vessels of the testes. Throughout the experimental period, the rates of pyknotic cells and TUNEL and cleaved caspase-3 positivity were significantly higher in the spermatogonia and spermatocytes of cadmium-treated newts compared with control newts. There were no significant differences between cadmium-treated and control newts in phospho-histone H3 positivity in the spermatogonia and spermatocytes. These results suggest that spermatogonia and spermatocytes in adult Iberian ribbed newts are highly sensitive to cadmium. This is the first report of the histomorphologic characteristics of cadmium-induced testicular dysfunction in newts. PMID:29097846

Daily precipitation extreme events for the Iberian Peninsula and its association with Atmospheric Rivers

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Trigo, Ricardo M.; Liberato, Margarida LR

2014-05-01

Extreme precipitation events in the Iberian Peninsula during the extended winter months have major socio-economic impacts such as floods, landslides, extensive property damage and life losses. These events are usually associated with low pressure systems with Atlantic origin, although some extreme events in summer/autumn months can be linked to Mediterranean low pressure systems. Quite often these events are evaluated on a casuistic base and making use of data from relatively few stations. An objective method for ranking daily precipitation events is presented here based on the extensive use of the most comprehensive database of daily gridded precipitation available for the Iberian Peninsula (IB02) and spanning from 1950 to 2008, with a resolution of 0.2° (approximately 16 x 22 km at latitude 40°N), for a total of 1673 pixels. This database is based on a dense network of rain gauges, combining two national data sets, 'Spain02' for peninsular Spain and Balearic islands, and 'PT02' for mainland Portugal, with a total of more than two thousand stations over Spain and four hundred stations over Portugal, all quality-controlled and homogenized. Through this objective method for ranking daily precipitation events the magnitude of an event is obtained after considering the area affected as well as its intensity in every grid point and taking into account the daily precipitation normalised departure from climatology. Different precipitation rankings are presented considering the entire Iberian Peninsula, Portugal and also the six largest river basins in the Iberian Peninsula. Atmospheric Rivers (AR) are the water vapour (WV) core section of the broader warm conveyor belt occurring over the oceans along the warm sector of extra-tropical cyclones. They are usually W-E oriented steered by pre-frontal low level jets along the trailing cold front and subsequently feed the precipitation in the extra-tropical cyclones. They are relatively narrow regions of concentrated WV

Past, present and future distributions of an Iberian Endemic, Lepus granatensis: ecological and evolutionary clues from species distribution models.

PubMed

Acevedo, Pelayo; Melo-Ferreira, José; Real, Raimundo; Alves, Paulo Célio

2012-01-01

The application of species distribution models (SDMs) in ecology and conservation biology is increasing and assuming an important role, mainly because they can be used to hindcast past and predict current and future species distributions. However, the accuracy of SDMs depends on the quality of the data and on appropriate theoretical frameworks. In this study, comprehensive data on the current distribution of the Iberian hare (Lepus granatensis) were used to i) determine the species' ecogeographical constraints, ii) hindcast a climatic model for the last glacial maximum (LGM), relating it to inferences derived from molecular studies, and iii) calibrate a model to assess the species future distribution trends (up to 2080). Our results showed that the climatic factor (in its pure effect and when it is combined with the land-cover factor) is the most important descriptor of the current distribution of the Iberian hare. In addition, the model's output was a reliable index of the local probability of species occurrence, which is a valuable tool to guide species management decisions and conservation planning. Climatic potential obtained for the LGM was combined with molecular data and the results suggest that several glacial refugia may have existed for the species within the major Iberian refugium. Finally, a high probability of occurrence of the Iberian hare in the current species range and a northward expansion were predicted for future. Given its current environmental envelope and evolutionary history, we discuss the macroecology of the Iberian hare and its sensitivity to climate change.

Past, Present and Future Distributions of an Iberian Endemic, Lepus granatensis: Ecological and Evolutionary Clues from Species Distribution Models

PubMed Central

Acevedo, Pelayo; Melo-Ferreira, José; Real, Raimundo; Alves, Paulo Célio

2012-01-01

The application of species distribution models (SDMs) in ecology and conservation biology is increasing and assuming an important role, mainly because they can be used to hindcast past and predict current and future species distributions. However, the accuracy of SDMs depends on the quality of the data and on appropriate theoretical frameworks. In this study, comprehensive data on the current distribution of the Iberian hare (Lepus granatensis) were used to i) determine the species’ ecogeographical constraints, ii) hindcast a climatic model for the last glacial maximum (LGM), relating it to inferences derived from molecular studies, and iii) calibrate a model to assess the species future distribution trends (up to 2080). Our results showed that the climatic factor (in its pure effect and when it is combined with the land-cover factor) is the most important descriptor of the current distribution of the Iberian hare. In addition, the model’s output was a reliable index of the local probability of species occurrence, which is a valuable tool to guide species management decisions and conservation planning. Climatic potential obtained for the LGM was combined with molecular data and the results suggest that several glacial refugia may have existed for the species within the major Iberian refugium. Finally, a high probability of occurrence of the Iberian hare in the current species range and a northward expansion were predicted for future. Given its current environmental envelope and evolutionary history, we discuss the macroecology of the Iberian hare and its sensitivity to climate change. PMID:23272115

Influence of pre-cure freezing on the profile of volatile compounds during the processing of Iberian hams.

PubMed

Pérez-Palacios, Trinidad; Ruiz, Jorge; Martín, Diana; Grau, Raúl; Antequera, Teresa

2010-04-15

This work was designed to study the effect of pre-cure freezing of raw thighs from Iberian pigs on the profile of volatile compounds during the processing of hams. Generation of volatile compounds during Iberian ham processing was similar in both pre-cure frozen and refrigerated hams, the main differences being at the final stage. The levels of 2-methylbutanal, 2-methyl-1-butanol, 2,3-butanediol and 2-heptanol were significantly higher in dry-cured hams that were pre-cure frozen than in refrigerated ones, whereas the content of most detected esters was statistically lower in pre-cure frozen than in refrigerated hams. The effect of pre-cure freezing of Iberian ham on the profile of volatile compounds during ripening was not remarkable. Few differences were found in the final product, which would not greatly modify the aroma and flavour features of the dry-cured hams. (c) 2010 Society of Chemical Industry.

Marine research in the Iberian Peninsula: A pledge for better times after an economic crisis

NASA Astrophysics Data System (ADS)

Borja, Angel; Marques, Joao-Carlos; Olabarria, Celia; Quintino, Victor

2013-10-01

The “17th Iberian Symposium of Marine Biology Studies” took place in San Sebastian (Spain), in September 2012. This contribution is an introduction to a special issue collating the most challenging papers submitted by Portuguese and Spanish scientists to the symposium. The text was structured as a novel, with the three main parts of a novel: (i) Setup: a historical context, from old times to the 1970's. This part presents the main Iberian scientific contribution to marine science, since the 15th Century, as a precedent to modern scientific research; (ii) Conflict: from the 1970's to the economic crisis. This part presents the evolution of Iberian research production, based upon a bibliometric study, from 1974 to 2012; and (iii) Resolution: what for the future?, which shows the main challenges, proposed by the authors, to the European research initiative 'Horizon 2020', including aspects such as the need of knowledge-base for marine management, the marine research as a potential source of jobs, the ecosystem-based approach, human activities and Marine Spatial Planning, moving from fisheries to aquaculture, or global change issues, among others.

Regional Climate Modelling of the Western Iberian Low-Level Wind Jet

NASA Astrophysics Data System (ADS)

Soares, Pedro M. M.; Lima, Daniela C. A.; Cardoso, Rita M.; Semedo, Álvaro

2016-04-01

The Iberian coastal low-level jet (CLLJ) is one the less studied boundary layer wind jet features in the Eastern Boundary Currents Systems (EBCS). These regions are amongst the most productive ocean ecosystems, where the atmosphere-land-ocean feedbacks, which include marine boundary layer clouds, coastal jets, upwelling and inland soil temperature and moisture, play an important role in defining the regional climate along the sub-tropical mid-latitude western coastal areas. Recently, the present climate western Iberian CLLJ properties were extensively described using a high resolution regional climate hindcast simulation. A summer maximum frequency of occurrence above 30% was found, with mean maximum wind speeds around 15 ms-1, between 300 and 400m heights (at the jet core). Since the 1990s the climate change impact on the EBCS is being studied, nevertheless some lack of consensus still persists regarding the evolution of upwelling and other components of the climate system in these areas. However, recently some authors have shown that changes are to be expected concerning the timing, intensity and spatial homogeneity of coastal upwelling and of CLLJs, in response to future warming, especially at higher latitudes, namely in Iberia and Canaries. In this study, the first climate change assessment study regarding the Western Iberian CLLJ, using a high resolution (9km) regional climate simulation, is presented. The properties of this CLLJ are studied and compared using two 30 years simulations: one historical simulation for the 1971-2000 period, and another simulation for future climate, in agreement with the RCP8.5 scenario, for the 2071-2100 period. Robust and consistent changes are found: 1) the hourly frequency of occurrence of the CLLJ is expected to increase in summer along the western Iberian coast, from mean maximum values of around 35% to approximately 50%; 2) the relative increase of the CLLJ frequency of occurrence is higher in the north off western Iberia

Detection of Iberian ham aroma by a semiconductor multisensorial system.

PubMed

Otero, Laura; Horrillo, M A Carmen; García, María; Sayago, Isabel; Aleixandre, Manuel; Fernández, M A Jesús; Arés, Luis; Gutiérrez, Javier

2003-11-01

A semiconductor multisensorial system, based on tin oxide, to control the quality of dry-cured Iberian hams is described. Two types of ham (submitted to different drying temperatures) were selected. Good responses were obtained from the 12 elements forming the multisensor for different operating temperatures. Discrimination between the two types of ham was successfully realised through principal component analysis (PCA).

The use of normalized climatological anomalies to rank precipitation events in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Trigo, Ricardo M.; Liberato, Margarida L. R.

2013-04-01

Extreme precipitation events in the Iberian Peninsula during winter months have major socio-economic impacts such as flooding, landslides, extensive property damage and life losses, and are usually associated to deep low pressure systems with Atlantic origin, although some extreme events in summer/autumn months are fed by the Mediterranean. Quite often these events are evaluated on a casuistic base and with relatively few stations. An objective method for ranking daily precipitation events is presented based on the extensive use of the most comprehensive database of daily precipitation available for the Iberian Peninsula (IB02) and spanning from 1950 to 2003, with a resolution of 0.2° (approximately 16 x 22 km at latitude 40°N), for a total of 1673 pixels. This database is based on a dense network of rain gauges, combining two national data sets, 'Spain02' for peninsular Spain and Balearic islands (Herrera et al., 2012), and 'PT02' for mainland Portugal (Belo-Pereira et al., 2011), with a total of more than two thousand stations over Spain and four hundred stations over Portugal, all quality-controlled and homogenized. The daily precipitation data from 1950 to 2003 are compared with a 30-year (1961-90) precipitation climatology to achieve a daily normalized departure from the climatology. The magnitude of an event is given daily by an index that is obtained after multiplying 1) the area (in percentage) that has precipitation anomalies above two standard deviations by 2) the mean values of these anomalies over this area. With this criterion we are able to evaluate not only the spatial extent of the precipitation events but also their spatially integrated intensity. In addition, to stress out the hydrological responses to precipitation, rankings taking into account the sum of the normalized anomalies over different time periods (3 days, 5 days and 10 days) were also computed. Here different precipitation rankings will be presented considering the entire Iberian

Acid mine drainage in the Iberian Pyrite Belt: 1. Hydrochemical characteristics and pollutant load of the Tinto and Odiel rivers.

PubMed

Nieto, Jose M; Sarmiento, Aguasanta M; Canovas, Carlos R; Olias, Manuel; Ayora, Carlos

2013-11-01

Acid mine drainage in the Iberian Pyrite Belt is probably the worst case in the world of surface water pollution associated with mining of sulphide mineral deposits. The Iberian Pyrite Belt is located in SW Iberian Peninsula, and it has been mined during the last 4,500 years. The central and eastern part of the Iberian Pyrite Belt is drained by the Tinto and Odiel rivers, which receive most of the acidic leachates from the mining areas. As a result, the main channels of the Tinto and Odiel rivers are very rich in metals and highly acidic until reaching the Atlantic Ocean. A significant amount of the pollutant load transported by these two rivers is delivered during the rainy season, as is usual in rivers of Mediterranean climate regions. Therefore, in order to have an accurate estimation of the pollutant loads transported by the Tinto and Odiel rivers, a systematic sampling on a weekly basis and a high temporal resolution sampling of floods events were both performed. Results obtained show that metal fluxes are strongly dependent on the study period, highlighting the importance of inter-annual studies involving dry and wet years.

Integrated Analysis of Climate, Soil, Topography and Vegetative Growth in Iberian Viticultural Regions

PubMed Central

Fraga, Helder; Malheiro, Aureliano C.; Moutinho-Pereira, José; Cardoso, Rita M.; Soares, Pedro M. M.; Cancela, Javier J.; Pinto, Joaquim G.; Santos, João A.

2014-01-01

The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate. PMID:25251495

Integrated analysis of climate, soil, topography and vegetative growth in Iberian viticultural regions.

PubMed

Fraga, Helder; Malheiro, Aureliano C; Moutinho-Pereira, José; Cardoso, Rita M; Soares, Pedro M M; Cancela, Javier J; Pinto, Joaquim G; Santos, João A

2014-01-01

The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate.

Reliability of an ELISA test for diagnosing oestrosis in Iberian ibex.

PubMed

Arias, María Sol; Moreno, Virginia; Sarasa, Mathieu; Paz-Silva, Adolfo; Sánchez-Andrade, Rita; Morrondo, Patrocinio; Díez-Baños, Pablo; Granados, José E; Sánchez, Antonio; Pérez, Jesús M

2014-04-01

Oestrosis is one of the most prevalent parasitosis affecting the Iberian ibex, Capra pyrenaica . To date, both the diagnosis of oestrosis and the determination of the intensity of parasitism require the use of invasive methods (necropsy), which necessarily limit research possibilities. We analyzed the immune humoral response (IgM and IgG) against Oestrus ovis L. excretory/secretory larval antigens in 32 sera taken from Iberian ibex from the Sierra Nevada Natural Space (southern Spain). Three antigens were collected: L1OES (from L1 larvae), L2OES (L2), and L3OES (L3). Necropsy was considered as the gold standard. The percentage of ibexes harboring Oestrus spp. larvae was 88%, the mean intensity of parasitism being 16.96 ± 14.96 larvae per parasitized host (range: 2-52). In our sample, first-instar larvae (L1) were found in 9% of ibexes, while 69% of hosts carried L2 larvae and 88% L3 larvae. Positive correlations between L1 and L2 numbers, and between L2 and L3 numbers were detected. The best results with the immunoenzymatic assay were obtained using IgG antibodies against the L1OES antigens (specificity = 89%; sensitivity = 100%; positive predictive value = 100%; negative predictive value = 57%). The IgG seroprevalence against L1OES was 78%. Thus, the analysis of IgG antibodies against antigens collected from L1 O. ovis larvae would seem to be a noninvasive method for reliably diagnosing oestrosis in naturally infested Iberian ibex. Nevertheless, additional immunological and methodological advances are still required because false positive and false negative results still represent a non-negligible part of the results of the ELISA tests.

Ecophysiology Tracks Phylogeny and Meets Ecological Models in an Iberian Gecko.

PubMed

Rato, C; Carretero, M A

2015-01-01

Because fitness of ectotherms, including reptiles, is highly dependent on temperature and water availability, the study of ecophysiological traits, such as preferred temperature (T p) and water loss rates (WLRs), may provide mechanistic evidence on the restricting factors to the species ranges. The Moorish gecko, Tarentola mauritanica, is a species complex with a circum-Mediterranean distribution. In the Iberian Peninsula, two sister parapatric forms of the complex, known as the Iberian and the European clades, are found. Ecological models previously performed using presence records and bioclimatic variables suggest niche divergence between both lineages correlated with precipitation rather than with temperature. In this study, we test this correlative hypothesis using ecophysiological evidence. In the laboratory, we analyzed the T p and WLRs for 84 adult males from seven distinct populations ascribed to one of the two lineages present in Iberia. Specifically, we evaluated the existence of trait conservatism versus adaptation among populations, lineages, or both. In addition, we tested for a trade-off between water and thermal traits and assessed whether climate regime of sampling localities had any influence on the ecophysiological patterns found. We found that T p is quite conserved at both the population and lineage levels and independent from body size. In contrast, water loss experiments revealed some variation among populations, but the regression analysis failed to detect correlation between T p and WLR at any level. Overall, the European lineage displayed a trend for higher water loss and was more diverse among populations when compared with the Iberian lineage. The lack of correspondence between ecophysiological traits and local climatic conditions favors phylogenetic signal versus adaptation. This suggests divergent evolutionary responses to the environment, mainly acting on water ecology, in both lineages, which may account for the differences in their

Mesozoic and Cenozoic exhumation history of the SW Iberian Variscides inferred from low-temperature thermochronology

NASA Astrophysics Data System (ADS)

Vázquez-Vílchez, Mercedes; Jabaloy-Sánchez, Antonio; Azor, Antonio; Stuart, Finlay; Persano, Cristina; Alonso-Chaves, Francisco M.; Martín-Parra, Luis Miguel; Matas, Jerónimo; García-Navarro, Encarnación

2015-11-01

The post-Paleozoic tectonothermal evolution of the SW Iberian Variscides is poorly known mainly due to the scarce low-temperature geochronological data available. We have obtained new apatite fission-tracks and apatite (U-Th)/He ages to constrain the Mesozoic and Cenozoic tectonic evolution of this portion of the Iberian Massif located just north of the Betic-Rif Alpine orogen. We have obtained nine apatite fission-track ages on samples from Variscan and pre-Variscan granitoids. These ages range from 174.4 (± 10.8) to 54.1 (± 4.9) Ma, with mean track lengths between 10.3 and 13.9 μm. We have also performed 5 (U-Th)/He datings on some of the same samples, obtaining ages between 74.6 (± 1.6) and 18.5 (± 1.4) Ma. Time-temperature path modeling of these low-temperature geochronological data leads us to envisage four post-Paleozoic tectonically controlled exhumation episodes in the SW Iberian Variscides. Three of these episodes occurred in Mesozoic times (Middle Triassic to Early Jurassic, Early Cretaceous, and Late Cretaceous) at rates of ≈ 1.1 to 2.5 °C Ma- 1, separated by periods with almost no cooling. We relate these Mesozoic cooling events to the formation of important marginal reliefs during the rifting and opening of the central and northern Atlantic realm. The fourth exhumation episode occurred in Cenozoic times at rates of ≈ 3.2 to 3.6 °C Ma- 1, being only recorded in samples next to faults with topographic escarpments. These samples cooled below 80 °C at ≈ 20 Ma at rates of 3-13 °C Ma- 1 due to roughly N-S oriented compressional stresses affecting the whole Iberian plate, which, in the particular case of SW Iberia, reactivated some of the previous Late Paleozoic thrusts.

Characterization of Staphylococcus spp. and Micrococcus spp. isolated from Iberian ham throughout the ripening process.

PubMed

Rodríguez, M; Núñez, F; Córdoba, J J; Sanabria, C; Bermúdez, E; Asensio, M A

1994-12-01

The Iberian dry cured ham is an uncooked meat product highly appreciated because of its characteristic flavour. This product is obtained from highly marbled Iberian pig hindlegs after 18-24 months of maturation under natural environmental conditions. The role of Micrococcaceae in the development of the aroma characteristics of this products remains unclear. Identification of Gram-positive, catalase-positive cocci isolated from Mannitol Salt Agar plates showed that Staphylococcus xylosus followed by Staphylococcus equorum are the predominant organisms, even after 16 months of maturing. A remarkable variety of types of both staphylococci and micrococci are detected at any sampling time. The metabolic activities of these organisms could contribute to the characteristics of the final product.

Using experimentation to understand the 10-year snowshoe hare cycle in the boreal forest of North America.

PubMed

Krebs, Charles J; Boonstra, Rudy; Boutin, Stan

2018-01-01

Population cycles have long fascinated ecologists from the time of Charles Elton in the 1920s. The discovery of large population fluctuations in undisturbed ecosystems challenged the idea that pristine nature was in a state of balance. The 10-year cycle of snowshoe hares (Lepus americanus Erxleben) across the boreal forests of Canada and Alaska is a classic cycle, recognized by fur traders for more than 300 years. Since the 1930s, ecologists have investigated the mechanisms that might cause these cycles. Proposed causal mechanisms have varied from sunspots to food supplies, parasites, diseases, predation and social behaviour. Both the birth rate and the death rate change dramatically over the cycle. Social behaviour was eliminated as a possible cause because snowshoe hares are not territorial and do not commit infanticide. Since the 1960s, large-scale manipulative experiments have been used to discover the major limiting factors. Food supply and predation quickly became recognized as potential key factors causing the cycle. Experiments adding food and restricting predator access to field populations have been decisive in pinpointing predation as the key mechanism causing these fluctuations. The immediate cause of death of most snowshoe hares is predation by a variety of predators, including the Canada lynx (Lynx canadensis Kerr). The collapse in the reproductive rate is not due to food shortage as was originally thought, but is a result of chronic stress from predator chases. Five major issues remain unresolved. First, what is the nature of the predator-induced memory that results in the prolonged low phase of the cycle? Second, why do hare cycles form a travelling wave, starting in the centre of the boreal forest in Saskatchewan and travelling across western Canada and Alaska? Third, why does the amplitude of the cycle vary greatly from one cycle to the next in the same area? Fourth, do the same mechanisms of population limitation apply to snowshoe hares in

Seasonal Effects of Habitat on Sources and Rates of Snowshoe Hare Predation in Alaskan Boreal Forests.

PubMed

Feierabend, Dashiell; Kielland, Knut

2015-01-01

Survival and predation of snowshoe hares (Lepus americanus) has been widely studied, yet there has been little quantification of the changes in vulnerability of hares to specific predators that may result from seasonal changes in vegetation and cover. We investigated survival and causes of mortalities of snowshoe hares during the late increase, peak, and decline of a population in interior Alaska. From June 2008 to May 2012, we radio-tagged 288 adult and older juvenile hares in early successional and black spruce (Picea mariana) forests and, using known-fate methods in program MARK, evaluated 85 survival models that included variables for sex, age, and body condition of hares, as well as trapping site, month, season, year, snowfall, snow depth, and air temperature. We compared the models using Akaike's information criterion with correction for small sample size. Model results indicated that month, capture site, and body condition were the most important variables in explaining survival rates. Survival was highest in July, and more generally during summer, when alternative prey was available to predators of hares. Low survival rates coincided with molting periods, breeding activity in the spring, and the introduction of juveniles to the sample population in the fall. We identified predation as the cause of mortality in 86% of hare deaths. When the source of predation could be determined, hares were killed more often by goshawks (Accipiter gentilis) than other predators in early successional forest (30%), and more often by lynx (Lynx canadensis) than other predators in black spruce forest (31%). Great horned owls (Bubo virginianus) and coyotes (Canis latrans) represented smaller proportions of hare predation, and non-predatory causes were a minor source (3%) of mortality. Because hares rely on vegetative cover for concealment from predators, we measured cover in predation sites and habitats that the hares occupied and concluded that habitat type had a greater

Seasonal Effects of Habitat on Sources and Rates of Snowshoe Hare Predation in Alaskan Boreal Forests

PubMed Central

Feierabend, Dashiell; Kielland, Knut

2015-01-01

Survival and predation of snowshoe hares (Lepus americanus) has been widely studied, yet there has been little quantification of the changes in vulnerability of hares to specific predators that may result from seasonal changes in vegetation and cover. We investigated survival and causes of mortalities of snowshoe hares during the late increase, peak, and decline of a population in interior Alaska. From June 2008 to May 2012, we radio-tagged 288 adult and older juvenile hares in early successional and black spruce (Picea mariana) forests and, using known-fate methods in program MARK, evaluated 85 survival models that included variables for sex, age, and body condition of hares, as well as trapping site, month, season, year, snowfall, snow depth, and air temperature. We compared the models using Akaike’s information criterion with correction for small sample size. Model results indicated that month, capture site, and body condition were the most important variables in explaining survival rates. Survival was highest in July, and more generally during summer, when alternative prey was available to predators of hares. Low survival rates coincided with molting periods, breeding activity in the spring, and the introduction of juveniles to the sample population in the fall. We identified predation as the cause of mortality in 86% of hare deaths. When the source of predation could be determined, hares were killed more often by goshawks (Accipiter gentilis) than other predators in early successional forest (30%), and more often by lynx (Lynx canadensis) than other predators in black spruce forest (31%). Great horned owls (Bubo virginianus) and coyotes (Canis latrans) represented smaller proportions of hare predation, and non-predatory causes were a minor source (3%) of mortality. Because hares rely on vegetative cover for concealment from predators, we measured cover in predation sites and habitats that the hares occupied and concluded that habitat type had a greater

The Galicia-Ossa-Morena Zone: Proposal for a new zone of the Iberian Massif. Variscan implications

NASA Astrophysics Data System (ADS)

Arenas, Ricardo; Díez Fernández, Rubén; Rubio Pascual, Francisco J.; Sánchez Martínez, Sonia; Martín Parra, Luis Miguel; Matas, Jerónimo; González del Tánago, José; Jiménez-Díaz, Alberto; Fuenlabrada, Jose M.; Andonaegui, Pilar; Garcia-Casco, Antonio

2016-06-01

Correlation of a group of allochthonous terranes (referred to as basal, ophiolitic and upper units) exposed in the NW and SW of the Iberian Massif, is used to propose a new geotectonic zone in the southern branch of the Variscan Orogen: the Galicia-Ossa-Morena Zone. Recent advances in SW Iberia identify most of the former Ossa-Morena Zone as another allochthonous complex of the Iberian Massif, the Ossa-Morena Complex, equivalent to the Cabo Ortegal, Órdenes, Malpica-Tui, Bragança and Morais complexes described in NW Iberia. The new geotectonic zone and its counterparts along the rest of the Variscan Orogen constitute an Internal Variscan Zone with ophiolites and units affected by high-P metamorphism. The Galicia-Ossa-Morena Zone includes a Variscan suture and pieces of continental crust bearing the imprint of Ediacaran-Cambrian events related to the activity of peri-Gondwanan magmatic arcs (Cadomian orogenesis). In the Iberian Massif, the general structure of this geotectonic zone represents a duplication of the Gondwanan platform, the outboard sections being juxtaposed on top of domains located closer to the mainland before amalgamation. This interpretation offers an explanation that overcomes some issues regarding the differences between the stratigraphic and paleontological record of the central and southern sections of the Iberian Massif. Also, equivalent structural relationships between other major geotectonic domains of the rest of the Variscan Orogen are consistent with our interpretation and allow suspecting similar configurations along strike of the orogen. A number of issues may be put forward in this respect that potentially open new lines of thinking about the architecture of the Variscan Orogen.

Increasing sea surface temperature and range shifts of intertidal gastropods along the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Rubal, Marcos; Veiga, Puri; Cacabelos, Eva; Moreira, Juan; Sousa-Pinto, Isabel

2013-03-01

There are well-documented changes in abundance and geographical range of intertidal invertebrates related to climate change at north Europe. However, the effect of sea surface warming on intertidal invertebrates has been poorly studied at lower latitudes. Here we analyze potential changes in the abundance patterns and distribution range of rocky intertidal gastropods related to climate change along the Iberian Peninsula. To achieve this aim, the spatial distribution and range of sub-tropical, warm- and cold-water species of intertidal gastropods was explored by a fully hierarchical sampling design considering four different spatial scales, i.e. from region (100 s of km apart) to quadrats (ms apart). Variability on their patterns of abundance was explored by analysis of variance, changes on their distribution ranges were detected by comparing with previous records and their relationship with sea water temperature was explored by rank correlation analyses. Mean values of sea surface temperature along the Iberian coast, between 1949 and 2010, were obtained from in situ data compiled for three different grid squares: south Portugal, north Portugal, and Galicia. Lusitanian species did not show significant correlation with sea water temperature or changes on their distributional range or abundance, along the temperature gradient considered. The sub-tropical species Siphonaria pectinata has, however, increased its distribution range while boreal cold-water species showed the opposite pattern. The latter was more evident for Littorina littorea that was almost absent from the studied rocky shores of the Iberian Peninsula. Sub-tropical and boreal species showed significant but opposite correlation with sea water temperature. We hypothesized that the energetic cost of frequent exposures to sub-lethal temperatures might be responsible for these shifts. Therefore, intertidal gastropods at the Atlantic Iberian Peninsula coast are responding to the effect of global warming as it

Prevalence of Cryptosporidium species in wildlife populations within a watershed landscape in southeastern New York State.

PubMed

Ziegler, Peter E; Wade, Susan E; Schaaf, Stephanie L; Stern, David A; Nadareski, Christopher A; Mohammed, Hussni O

2007-06-20

A cross-sectional study was conducted to determine the prevalence of Cryptosporidium in wildlife in the New York City (NYC) Watershed in southeastern New York State. A total of 6227 fecal samples were collected and evaluated from 5892 mammals (38 species), 263 birds (14 species), 2 reptiles (2 species), 8 amphibians (4 species), and 62 fish (15 species). Cryptosporidium was detected in 30 species. Of the species found positive for Cryptosporidium, 16 represented new records for this parasite-Alosa pseudoharengus, Larus delawarensis, Blarina brevicauda, Sorex cinereus, Parascalops breweri, Myotis lucifugus, Peromyscus maniculatus, Microtus pennsylvanicus, Clethrionomys gapperi, Tamiasciurus hudsonicus, Marmota monax, Erethizon dorsatum, Canis latrans, Mustela erminea, Mustela vison, and Lynx rufus. Factors such as age, sex, season, and land use were evaluated to determine if there was any association with infection by this parasite. Animals were more likely to be positive for Cryptosporidium during spring and in agricultural land use.

The phylogeographical history of the Iberian steppe plant Ferula loscosii (Apiaceae): a test of the abundant-centre hypothesis.

PubMed

Pérez-Collazos, E; Sanchez-Gómez, P; Jiménez, F; Catalán, P

2009-03-01

The geology and climate of the western Mediterranean area were strongly modified during the Late Tertiary and the Quaternary. These geological and climatic events are thought to have induced changes in the population histories of plants in the Iberian Peninsula. However, fine-scale genetic spatial architecture across western Mediterranean steppe plant refugia has rarely been investigated. A population genetic analysis of amplified fragment length polymorphism variation was conducted on present-day, relict populations of Ferula loscosii (Apiaceae). This species exhibits high individual/population numbers in the middle Ebro river valley and, according to the hypothesis of an abundant-centre distribution, these northern populations might represent a long-standing/ancestral distribution centre. However, our results suggest that the decimated southern and central Iberian populations are more variable and structured than the northeastern ones, representing the likely vestiges of an ancestral distribution centre of the species. Phylogeographical analysis suggests that F. loscosii likely originated in southern Spain and then migrated towards the central and northeastern ranges, further supporting a Late Miocene southern-bound Mediterranean migratory way for its oriental steppe ancestors. In addition, different glacial-induced conditions affected the southern and northern steppe Iberian refugia during the Quaternary. The contrasting genetic homogeneity of the Ebro valley range populations compared to the southern Iberian ones possibly reflects more severe bottlenecks and subsequent genetic drift experienced by populations of the northern Iberia refugium during the Pleistocene, followed by successful postglacial expansion from only a few founder plants.

Drought trends in the Iberian Peninsula over the last 112 years

NASA Astrophysics Data System (ADS)

Gouveia, Célia M.; Ramos, Patrícia; Russo, Ana; Trigo, Ricardo M.

2015-04-01

The Iberian Peninsula is often affected by drought events with strong influences in ecosystems and the related social and economic impacts (Gouveia et al. 2012, Trigo et al., 2013). In the last decades the severity of droughts in Iberia have increased due to the higher atmospheric evaporative demand (Vicente-Serrano et al., 2014). The need for a deeper knowledge of drought frequency, duration and intensity over the Iberian Peninsula during the last 112 years is reinforced by the findings showing that the period of 1970-2010 over the Mediterranean region was considered drier when compared with 1901-1970. Together with the increasing dryness, the projections point for an increase of drought conditions during the twenty-first century (Hoerling et al., 2012) will tend to exacerbate these problems. The evolution of drought in the Iberian Peninsula was analyzed, using the Standardized Precipitation Evapotranspiration Index (SPEI) and the Standardized Precipitation Index (SPI), for the period 1901-2012, and the sub-periods 1901-1937, 1938-1974 and 1975-2012. We have used SPI and SPEI for the time scale of 12 months, as obtained from CRU TS3.21 database between 1901 and 2012, using a spatial resolution of 0.5°. The drought indices were analyzed in order to identify significant trends during the entire period and sub-periods. Trends in annual precipitation and PET were also performed. Drought's duration, magnitude and time spanned between drought events were computed. SPI and SPEI significant trends show areas with opposite signals in the period 1901-2012, following precipitation patterns. Precipitation trends are significant and positive in the Northwestern region of the IP, and significant and negative in the Southern areas. SPEI identified dryer conditions and an increase in the area affected by droughts, which is in agreement with the increase in PET on the majority of the territory. The same spatial differences were identified in the drought duration, magnitude and

Transient response of the Northwestern Iberian upwelling regime.

PubMed

Ferreira Cordeiro, Nuno Gonçalo; Dubert, Jesus; Nolasco, Rita; Desmond Barton, Eric

2018-01-01

The hydrography and dynamics of NW Iberian margin were explored for July 2009, based on a set of in situ and remote sensing observations. Zonal sections of standard CTD casts, towed CTD (SeaSoar), Acoustic Doppler Current Profilers (ADCP) and Lagrangian surveys were made to characterize cycles of upwelling and relaxation in this region. Two periods of northerly winds, bounded by relaxation periods, were responsible for the formation of an upwelling front extending to the shelf edge. An equatorward flow was quickly set up on the shelf responding to the northerly wind pulses. South of Cape Silleiro, the development and subsequent relaxation of an upwelling event was intensively surveyed in the shelf, following a Lagrangian drifter transported by the upwelling jet. This region is part of an upwelling center extending from Cape Silleiro to Porto, where the surface temperature was colder than the neighboring regions, under upwelling favorable winds. As these winds relaxed, persistent poleward flow developed, originating south of the upwelling center and consisting in an inner-shelf tongue of warm waters. During an event of strong southerly wind, the poleward flow was observed to extend to the whole continental shelf. Although the cruise was executed during summertime, the presence of river-plumes was observed over the shelf. The interaction of the plumes with the circulation on the shelf was also described in terms of coastal convergence and offshore advection. The sampling of the offshore and slope regions showed the presence of the Iberian poleward current offshore and a persistent equatorward flow over the upper slope.

Quantification and molecular characterization of the feline leukemia virus A receptor.

PubMed

Katrin Helfer-Hungerbuehler, A; Cattori, Valentino; Bachler, Barbara; Hartnack, Sonja; Riond, Barbara; Ossent, Pete; Lutz, Hans; Hofmann-Lehmann, Regina

2011-12-01

Virus receptors and their expression patterns on the cell surface determine the cell tropism of the virus, host susceptibility and the pathogenesis of the infection. Feline thiamine transport protein 1 (fTHTR1) has been identified as the receptor for feline leukemia virus (FeLV) A. The goal of the present study was to develop a quantitative, TaqMan real-time PCR assay to investigate fTHTR1 mRNA expression in tissues of uninfected and FeLV-infected cats, cats of different ages, in tumor tissues and leukocyte subsets. Moreover, the receptor was molecularly characterized in different feline species. fTHTR1 mRNA expression was detected in all 30 feline tissues investigated, oral mucosa scrapings and blood. Importantly, identification of significant differences in fTHTR1 expression relied on normalization with an appropriate reference gene. The lowest levels were found in the blood, whereas high levels were measured in the oral mucosa, salivary glands and the musculature. In the blood, T lymphocytes showed significantly higher fTHTR1 mRNA expression levels than neutrophil granulocytes. In vitro activation of peripheral blood mononuclear cells with concanavalin A alone or followed by interleukin-2 led to a transient increase of fTHTR1 mRNA expression. In the blood, but not in the examined tissues, FeLV-infected cats tended to have lower fTHTR1 mRNA levels than uninfected cats. The fTHTR1 mRNA levels were not significantly different between tissues with lymphomas and the corresponding non-neoplastic tissues. fTHTR1 was highly conserved among different feline species (Iberian lynx, Asiatic and Indian lion, European wildcat, jaguarundi, domestic cat). In conclusion, while ubiquitous fTHTR1 mRNA expression corresponded to the broad target tissue range of FeLV, particularly high fTHTR1 levels were found at sites of virus entry and shedding. The differential susceptibility of different species to FeLV could not be attributed to variations in the fTHTR1 sequence. Copyright �

Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia.

PubMed

Chávez-Galarza, Julio; Henriques, Dora; Johnston, J Spencer; Carneiro, Miguel; Rufino, José; Patton, John C; Pinto, M Alice

2015-06-01

Dissecting diversity patterns of organisms endemic to Iberia has been truly challenging for a variety of taxa, and the Iberian honey bee is no exception. Surveys of genetic variation in the Iberian honey bee are among the most extensive for any honey bee subspecies. From these, differential and complex patterns of diversity have emerged, which have yet to be fully resolved. Here, we used a genome-wide data set of 309 neutrally tested single nucleotide polymorphisms (SNPs), scattered across the 16 honey bee chromosomes, which were genotyped in 711 haploid males. These SNPs were analysed along with an intergenic locus of the mtDNA, to reveal historical patterns of population structure across the entire range of the Iberian honey bee. Overall, patterns of population structure inferred from nuclear loci by multiple clustering approaches and geographic cline analysis were consistent with two major clusters forming a well-defined cline that bisects Iberia along a northeastern-southwestern axis, a pattern that remarkably parallels that of the mtDNA. While a mechanism of primary intergradation or isolation by distance could explain the observed clinal variation, our results are more consistent with an alternative model of secondary contact between divergent populations previously isolated in glacial refugia, as proposed for a growing list of other Iberian taxa. Despite current intense honey bee management, human-mediated processes have seemingly played a minor role in shaping Iberian honey bee genetic structure. This study highlights the complexity of the Iberian honey bee patterns and reinforces the importance of Iberia as a reservoir of Apis mellifera diversity. © 2015 John Wiley & Sons Ltd.

Wear Fast, Die Young: More Worn Teeth and Shorter Lives in Iberian Compared to Scottish Red Deer

PubMed Central

Pérez-Barbería, F. J.; Carranza, J.; Sánchez-Prieto, C.

2015-01-01

Teeth in Cervidae are permanent structures that are not replaceable or repairable; consequently their rate of wear, due to the grinding effect of food and dental attrition, affects their duration and can determine an animal's lifespan. Tooth wear is also a useful indicator of accumulative life energy investment in intake and mastication and their interactions with diet. Little is known regarding how natural and sexual selection operate on dental structures within a species in contrasting environments and how these relate to life history traits to explain differences in population rates of tooth wear and longevity. We hypothesised that populations under harsh environmental conditions should be selected for more hypsodont teeth while sexual selection may maintain similar sex differences within different populations. We investigated the patterns of tooth wear in males and females of Iberian red deer (Cervus elaphus hispanicus) in Southern Spain and Scottish red deer (C. e. scoticus) across Scotland, that occur in very different environments, using 10343 samples from legal hunting activities. We found higher rates of both incisor and molar wear in the Spanish compared to Scottish populations. However, Scottish red deer had larger incisors at emergence than Iberian red deer, whilst molars emerged at a similar size in both populations and sexes. Iberian and Scottish males had earlier tooth depletion than females, in support of a similar sexual selection process in both populations. However, whilst average lifespan for Iberian males was 4 years shorter than that for Iberian females and Scottish males, Scottish males only showed a reduction of 1 year in average lifespan with respect to Scottish females. More worn molars were associated with larger mandibles in both populations, suggesting that higher intake and/or greater investment in food comminution may have favoured increased body growth, before later loss of tooth efficiency due to severe wear. These results

Wear Fast, Die Young: More Worn Teeth and Shorter Lives in Iberian Compared to Scottish Red Deer.

PubMed

Pérez-Barbería, F J; Carranza, J; Sánchez-Prieto, C

2015-01-01

Teeth in Cervidae are permanent structures that are not replaceable or repairable; consequently their rate of wear, due to the grinding effect of food and dental attrition, affects their duration and can determine an animal's lifespan. Tooth wear is also a useful indicator of accumulative life energy investment in intake and mastication and their interactions with diet. Little is known regarding how natural and sexual selection operate on dental structures within a species in contrasting environments and how these relate to life history traits to explain differences in population rates of tooth wear and longevity. We hypothesised that populations under harsh environmental conditions should be selected for more hypsodont teeth while sexual selection may maintain similar sex differences within different populations. We investigated the patterns of tooth wear in males and females of Iberian red deer (Cervus elaphus hispanicus) in Southern Spain and Scottish red deer (C. e. scoticus) across Scotland, that occur in very different environments, using 10343 samples from legal hunting activities. We found higher rates of both incisor and molar wear in the Spanish compared to Scottish populations. However, Scottish red deer had larger incisors at emergence than Iberian red deer, whilst molars emerged at a similar size in both populations and sexes. Iberian and Scottish males had earlier tooth depletion than females, in support of a similar sexual selection process in both populations. However, whilst average lifespan for Iberian males was 4 years shorter than that for Iberian females and Scottish males, Scottish males only showed a reduction of 1 year in average lifespan with respect to Scottish females. More worn molars were associated with larger mandibles in both populations, suggesting that higher intake and/or greater investment in food comminution may have favoured increased body growth, before later loss of tooth efficiency due to severe wear. These results

Parasite species of the endangered Iberian wolf (Canis lupus signatus) and a sympatric widespread carnivore.

PubMed

Figueiredo, Ana; Oliveira, Lucia; Madeira de Carvalho, Luís; Fonseca, Carlos; Torres, Rita Tinoco

2016-08-01

Parasites have a profound impact on wildlife population dynamics. However, until some years ago, studies on the occurrence and prevalence of wildlife parasites were neglected comparatively with the studies on humans and domestic animals. In this study, we determined the parasite prevalence of two sympatric wild canids: the endangered Iberian wolf (Canis lupus signatus) and the widespread red fox (Vulpes vulpes), in central Portugal. From November 2014 to July 2015, fresh fecal samples from both species were collected monthly in several transects distributed throughout the study area. All samples were submitted to several coprological techniques. In total, 6 helminth parasites (Crenosoma vulpis, Angiostrongylus vasorum, Toxocara canis, Trichuris vulpis, Ancylostomatidae, Toxascaris leonina), and a protozoa (Balantidium coli) were identified based on size and morphology. The red fox was infected by seven different parasites while the Iberian wolf was infected by four. All parasites present in wolf were also present in the red fox. C. vulpis had the higher prevalence in red fox, while Ancylostomatidae were the most prevalent parasites in wolf. To our knowledge, this is the first study in this isolated subpopulation of the Iberian wolf. Our results show that both carnivores carry parasites that are of concern as they are pathogenic to humans and other wild and domestic animals. We suggest that surveillance programs must also include monitoring protocols of wildlife; particularly endangered species.

Lessons learned from the ATLAS performance studies of the Iberian Cloud for the first LHC running period

NASA Astrophysics Data System (ADS)

Sánchez-Martínez, V.; Borges, G.; Borrego, C.; del Peso, J.; Delfino, M.; Gomes, J.; González de la Hoz, S.; Pacheco Pages, A.; Salt, J.; Sedov, A.; Villaplana, M.; Wolters, H.

2014-06-01

In this contribution we describe the performance of the Iberian (Spain and Portugal) ATLAS cloud during the first LHC running period (March 2010-January 2013) in the context of the GRID Computing and Data Distribution Model. The evolution of the resources for CPU, disk and tape in the Iberian Tier-1 and Tier-2s is summarized. The data distribution over all ATLAS destinations is shown, focusing on the number of files transferred and the size of the data. The status and distribution of simulation and analysis jobs within the cloud are discussed. The Distributed Analysis tools used to perform physics analysis are explained as well. Cloud performance in terms of the availability and reliability of its sites is discussed. The effect of the changes in the ATLAS Computing Model on the cloud is analyzed. Finally, the readiness of the Iberian Cloud towards the first Long Shutdown (LS1) is evaluated and an outline of the foreseen actions to take in the coming years is given. The shutdown will be a good opportunity to improve and evolve the ATLAS Distributed Computing system to prepare for the future challenges of the LHC operation.

The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age.

PubMed

Szécsényi-Nagy, Anna; Roth, Christina; Brandt, Guido; Rihuete-Herrada, Cristina; Tejedor-Rodríguez, Cristina; Held, Petra; García-Martínez-de-Lagrán, Íñigo; Arcusa Magallón, Héctor; Zesch, Stephanie; Knipper, Corina; Bánffy, Eszter; Friederich, Susanne; Meller, Harald; Bueno Ramírez, Primitiva; Barroso Bermejo, Rosa; de Balbín Behrmann, Rodrigo; Herrero-Corral, Ana M; Flores Fernández, Raúl; Alonso Fernández, Carmen; Jiménez Echevarria, Javier; Rindlisbacher, Laura; Oliart, Camila; Fregeiro, María-Inés; Soriano, Ignacio; Vicente, Oriol; Micó, Rafael; Lull, Vicente; Soler Díaz, Jorge; López Padilla, Juan Antonio; Roca de Togores Muñoz, Consuelo; Hernández Pérez, Mauro S; Jover Maestre, Francisco Javier; Lomba Maurandi, Joaquín; Avilés Fernández, Azucena; Lillios, Katina T; Silva, Ana Maria; Magalhães Ramalho, Miguel; Oosterbeek, Luiz Miguel; Cunha, Claudia; Waterman, Anna J; Roig Buxó, Jordi; Martínez, Andrés; Ponce Martínez, Juana; Hunt Ortiz, Mark; Mejías-García, Juan Carlos; Pecero Espín, Juan Carlos; Cruz-Auñón Briones, Rosario; Tomé, Tiago; Carmona Ballestero, Eduardo; Cardoso, João Luís; Araújo, Ana Cristina; Liesau von Lettow-Vorbeck, Corina; Blasco Bosqued, Concepción; Ríos Mendoza, Patricia; Pujante, Ana; Royo-Guillén, José I; Esquembre Beviá, Marco Aurelio; Dos Santos Goncalves, Victor Manuel; Parreira, Rui; Morán Hernández, Elena; Méndez Izquierdo, Elena; Vega Y Miguel, Jorge; Menduiña García, Roberto; Martínez Calvo, Victoria; López Jiménez, Oscar; Krause, Johannes; Pichler, Sandra L; Garrido-Pena, Rafael; Kunst, Michael; Risch, Roberto; Rojo-Guerra, Manuel A; Haak, Wolfgang; Alt, Kurt W

2017-11-15

Agriculture first reached the Iberian Peninsula around 5700 BCE. However, little is known about the genetic structure and changes of prehistoric populations in different geographic areas of Iberia. In our study, we focus on the maternal genetic makeup of the Neolithic (~ 5500-3000 BCE), Chalcolithic (~ 3000-2200 BCE) and Early Bronze Age (~ 2200-1500 BCE). We report ancient mitochondrial DNA results of 213 individuals (151 HVS-I sequences) from the northeast, central, southeast and southwest regions and thus on the largest archaeogenetic dataset from the Peninsula to date. Similar to other parts of Europe, we observe a discontinuity between hunter-gatherers and the first farmers of the Neolithic. During the subsequent periods, we detect regional continuity of Early Neolithic lineages across Iberia, however the genetic contribution of hunter-gatherers is generally higher than in other parts of Europe and varies regionally. In contrast to ancient DNA findings from Central Europe, we do not observe a major turnover in the mtDNA record of the Iberian Late Chalcolithic and Early Bronze Age, suggesting that the population history of the Iberian Peninsula is distinct in character.

Crustal structure of an intraplate thrust belt: The Iberian Chain revealed by wide-angle seismic, magnetotelluric soundings and gravity data

NASA Astrophysics Data System (ADS)

Seillé, Hoël; Salas, Ramon; Pous, Jaume; Guimerà, Joan; Gallart, Josep; Torne, Montserrat; Romero-Ruiz, Ivan; Diaz, Jordi; Ruiz, Mario; Carbonell, Ramon; Mas, Ramón

2015-11-01

The Iberian Chain is a Cenozoic intraplate thrust belt located within the Iberian plate. Unlike other belts in the Iberia Peninsula, the scarcity of geophysical studies in this area results in a number of unknowns about its crustal structure. The Iberian Chain crust was investigated by means of a NE-SW refraction/wide-angle reflection seismic transect and two magnetotelluric profiles across the chain, oriented along the same direction. The seismic profile was designed to sample the crust by means of three shots designed to obtain a reversed profile. The resulting velocity-depth model shows a moderate thickening of the crust toward the central part of the profile, where crustal thickness reaches values above 40 km, thinning toward de SW Tajo and NE Ebro foreland basins. The crustal thickening is concentrated in the upper crust. The seismic results are in overall agreement with regional trends of Bouguer gravity anomaly and the main features of the seismic model were reproduced by gravity modeling. The magnetotelluric data consist of 39 sites grouped into two profiles, with periods ranging from 0.01 s to 1000 s. Dimensionality analyses show significant 3D effects in the resistivity structure and therefore we carried out a joint 3D inversion of the full impedance tensor and magnetic transfer functions. The Mesozoic and Cenozoic basins along the Chain are well characterized by shallow high conductive zones and low velocities. Elongated conductors reaching mid-crustal depths evidence the presence of major faults dominating the crustal structure. The results from the interpretation of these complementary geophysical data sets provided the first images of the crustal structure of the Iberian Chain. They are consistent with a Cenozoic shortening responsible of the upper crust thickening as well as of the uplift of the Iberian Chain and the generation of its present day topography.

Using environmental features to model highway crossing behavior of Canada lynx in the Southern Rocky Mountains.

DOT National Transportation Integrated Search

2015-07-21

Carnivores are particularly sensitive to reductions in population connectivity caused by human disturbance and habitat fragmentation. Permeability of transportation corridors to carnivore movements is central to species conservation given the large s...

Linking movement behavior and fine-scale genetic structure to model landscape connectivity for bobcats (Lynx rufus)

Treesearch

Dawn M. Reding; Samuel A. Cushman; Todd E. Gosselink; William R. Clark

2013-01-01

Spatial heterogeneity can constrain the movement of individuals and consequently genes across a landscape, influencing demographic and genetic processes. In this study, we linked information on landscape composition, movement behavior, and genetic differentiation to gain a mechanistic understanding of how spatial heterogeneity may influence movement and gene flow of...

Using environmental features to model highway crossing behavior of Canada lynx in the Southern Rocky Mountains

Treesearch

Phillip E. Baigas; John R. Squires; Lucretia E. Olson; Jacob S. Ivan; Elizabeth. K. Roberts

2017-01-01

Carnivores are particularly sensitive to reductions in population connectivity caused by human disturbance and habitat fragmentation. Permeability of transportation corridors to carnivore movements is central to species conservation given the large spatial extent of transportation networks and the high mobility of many carnivore species. We investigated the degree to...

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula.

PubMed

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H

2018-06-05

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra.

Freshwater macroinvertebrate samples from a water quality monitoring network in the Iberian Peninsula

PubMed Central

Escribano, Nora; Oscoz, Javier; Galicia, David; Cancellario, Tommaso; Durán, Concha; Navarro, Patricia; Ariño, Arturo H.

2018-01-01

This dataset gathers information about the macroinvertatebrate samples and environmental variables collected on rivers of the Ebro River Basin (NE Iberian Peninsula), the second largest catchment in the Iberian Peninsula. The collection is composed of 1,776 sampling events carried out between 2005 and 2015 at more than 400 sampling sites. This dataset is part of a monitoring network set up by the Ebro Hydrographic Confederation, the official body entrusted with the care of the basin, to fulfill the requirements of the European Water Framework Directive. Biological indices based on the freshwater macroinvertebrate communities were used to evaluate the ecological status of the water bodies within the basin. Samples were qualitatively screened for all occurring taxa. Then, all individuals from all taxa in a quantitative subsample of each sample were counted. Biological indices were calculated to estimate water quality at each sampling site. All samples are kept at the Museum of Zoology of the University of Navarra. PMID:29870034

The use of radio-collars for monitoring wildlife diseases: a case study from Iberian ibex affected by Sarcoptes scabiei in Sierra Nevada, Spain

PubMed Central

2013-01-01

Background Wildlife radio tracking has gained popularity during the recent past. Ecologists and conservationists use radio-collars for different purposes: animal movement monitoring, home range, productivity, population estimation, behaviour, habitat use, survival, and predator-prey interaction, among others. The aim of our present study is to highlight the application of radio-collars for wildlife diseases monitoring. The spread of wildlife diseases and the efficacy of management actions for controlling them propose serious challenges for ecologists and conservationists, since it is difficult to re-capture (or simply observe) the same animal in pre-determined temporal interval, but such difficulty is overcome by the use of gps-gsm radio collars. Methods In the present study we report, for the first time to our knowledge, the use of radio-collars in the monitoring of Iberian ibex affected by Sarcoptes scabiei in Sierra Nevada mountain range, Spain. Twenty-five moderate or slightly mangy animals were radio-collared between 2006 and 2013. Results The radio-collars allowed us to confirm the presence of resistance to S. scabiei within Iberian ibex population. Twenty (80%) of the collared animals recovered totally from mange, while the disease progressed in the other five Iberian ibex (20% of the collared animals) and the animals died. The average estimated recovery time of the resistant animals was 245 ± 277 days, and the estimated average survival time of the non-resistant Iberian ibex was 121 ± 71 days. Non-resistant animals survived at least 100 days, while all of them died with less than 200 days. Sixty per cent of the resistant animals were recovered with less than 200 days. Conclusions We report, for the first time, the successful use of radio collars for wildlife diseases monitoring using Iberian ibex/S. scabiei as a model. By using radio collars we documented that most of the Sarcoptes-infected Iberian ibex are resistant to this disease, and we

Effects of teleconnection patterns on the atmospheric routes, precipitation and deposition amounts in the north-eastern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Izquierdo, Rebeca; Alarcón, Marta; Aguillaume, Laura; Àvila, Anna

2014-06-01

The North Atlantic Oscillation (NAO) has been identified as one of the atmospheric patterns which mostly influence the temporal evolution of precipitation and temperature in the Mediterranean area. Recently, the Western Mediterranean Oscillation (WeMO) has also been proposed to describe the precipitation variability in the eastern Iberian Peninsula. This paper examines whether the chemical signature and/or the chemical deposition amounts recorded over NE Iberian Peninsula are influenced by these climatic variability patterns. Results show a more relevant role of the WeMO compared to NAO in the deposition of either marine (Cl-, Na+, Mg2+) or anthropogenic pollutants (H+, NH4+, NO3- and SO42-). A cluster classification of provenances indicated that in winter (December to March) fast Atlantic air flows correspond to positive WeMO indices, while negative WeMOi are associated to Northeastern and Southwestern circulations. The negative phase of WeMO causes the entry of air masses from the Mediterranean into the Iberian Peninsula, that are enriched with marine ions and ions of anthropogenic origin (NH4+, NO3- and SO42-). For these later, this suggests the advection over the Mediterranean of polluted air masses from southern Europe and the scavenging and deposition of this pollution by precipitation during the WeMO negative phases. This will carry transboundary pollutants to the NE Iberian Peninsula. However, local pollutants may also contribute, as precipitation events from the Mediterranean and the Atlantic (associated to both WeMO phases) may incorporate emissions that accumulate locally during the winter anticyclonic episodes typical of the region.

Outbreak of ringworm in a traditional Iberian pig farm in Spain.

PubMed

García-Sánchez, Alfredo; Bazán, Javier; de Mendoza, Javier Hermoso; Martínez, Remigio; Sánchez, Sergio; de Mendoza, Miguel Hermoso

2011-03-01

An outbreak of dermatophytosis caused by Microsporum nanum in a traditional Iberian extensive farm is described. The morbidity was 100% among lactating sows; however, suckling and weaning pigs, as well as boars never developed the lesions seen in the sows. The clinical aspects of porcine ringworm caused by this fungus are discussed and the ecology of the organism is reviewed. © 2009 Blackwell Verlag GmbH.

Evaluation of three enzyme-linked immunosorbent assays for sarcoptic mange diagnosis and assessment in the Iberian ibex, Capra pyrenaica.

PubMed

Ráez-Bravo, Arián; Granados, José Enrique; Serrano, Emmanuel; Dellamaria, Debora; Casais, Rosa; Rossi, Luca; Puigdemont, Anna; Cano-Manuel, Francisco Javier; Fandos, Paulino; Pérez, Jesús María; Espinosa, José; Soriguer, Ramón Casimiro; Citterio, Carlo; López-Olvera, Jorge Ramón

2016-10-21

Sarcoptic mange is a contagious skin disease caused by the mite Sarcoptes scabiei, affecting different mammalian species worldwide including the Iberian ibex (Capra pyrenaica), in which mortalities over 90 % of the population have been reported. No efficient diagnostic methods are available for this disease, particularly when there are low mite numbers and mild or no clinical signs. In this study, three enzyme-linked immunosorbent assays (ELISA) developed for dog (ELISA A), Cantabrian chamois (Rupicapra pyrenaica parva) (ELISA B) and Alpine chamois (Rupicapra rupicapra) (ELISA C), were evaluated to detect specific antibodies (IgG) to sarcoptic mange in Iberian ibex sera. Serum samples from 131 Iberian ibexes (86 healthy and 45 scabietic) were collected from 2005 to 2012 in the Sierra Nevada Natural and National Parks (southern Spain). Based on visual inspection, ibexes were classified into one of three categories, namely healthy (without scabietic compatible lesions), mildly affected (skin lesions over less than 50 % of the body surface) and severely affected (skin lesions over more than 50 % of the body surface). The optimal cut-off point, specificity, sensitivity and the area under the curve (AUC) were calculated, and the agreement between tests was determined. Moreover, differences in the optical density (OD) related to scabies severity have been evaluated for the best test. ELISA C showed better performance than the two other tests, reaching higher values of sensitivity (93.0 %) and specificity (93.5 %) against the visual estimation of the percentage of affected skin, chosen as the gold standard. Significantly higher concentrations of specific antibodies were observed with this test in the mildly and severely infested ibexes than in healthy ones. Our results revealed that ELISA C was an optimal test to diagnose sarcoptic mange in the Iberian ibex. Further studies characterizing immune response during the course of the disease, including spontaneous or drug

Lack of evidence of spill-over of Salmonella enterica between cattle and sympatric Iberian ibex (Capra pyrenaica) from a protected area in Catalonia, NE Spain.

PubMed

Navarro-Gonzalez, N; Velarde, R; Porrero, M C; Mentaberre, G; Serrano, E; Mateos, A; Domínguez, L; Lavín, S

2014-08-01

Salmonella enterica is a zoonotic agent of worldwide importance found in a wide range of wild hosts. However, its prevalence in many popular game species has never been assessed. Iberian ibex (Capra pyrenaica) is the main game caprinae of the Iberian Peninsula and around two thousand individuals are hunted every year for trophy or for home consumption. In this work, 313 Iberian ibexes from the Ports de Tortosa i Beseit National Game Reserve (NE Spain) were tested for Salmonella enterica in faeces, and anti microbial susceptibility was determined. The exact location of shooting or capture was recorded with a GPS device to study the links of Salmonella infection with cattle presence and human proximity. Additionally, samples were taken from cattle grazing inside this reserve (n = 73). Only three Iberian ibexes (0.96%, 95% CI 0.2-2.8) were positive to Salmonella (serotype Enteritidis, Bardo and 35:r:z35), while prevalence was moderate in cattle: 21.92% (95% CI 13.10-33.14, serotype Meleagridis, Anatum, Kedougou and Othmarschen). All isolates were susceptible to the anti microbial agents tested. Moreover, a case of fatal septicaemic salmonellosis in an 11-year-old male Iberian ibex is described where Salmonella enterica serotype Enteritidis was isolated from the lung, liver and spleen samples. The low prevalence of Salmonella in Iberian ibex and the lack of shared serotypes suggest no association to cattle. Despite this, game meat aimed for human consumption should be examined, and it is strongly recommended that hunters and game keepers manipulate animals and carcasses under maximal hygienic conditions to avoid environmental contamination and human contagion. © 2012 Blackwell Verlag GmbH.

Iberian Spanish Function Catalog. Method for Determining Language Objectives and Criteria, Volume VI.

ERIC Educational Resources Information Center

Setzler, Hubert H., Jr.; And Others

This Iberian Spanish Function Catalog presents sentences, phrases, and patterns organized by language functions and functional categories. This catalog is part of the communication/language objectives-based system (C/LOBS), which supports the front-end analysis efforts of the Defense Language Institute Foreign Language Center. The C/LOBS project,…

A review of the arcuate structures in the Iberian Variscides; constraints and genetic models

NASA Astrophysics Data System (ADS)

Dias, R.; Ribeiro, A.; Romão, J.; Coke, C.; Moreira, N.

2016-06-01

The main Ibero-Armorican Arc (IAA) is essentially defined by a predominant NW-SE trend in the Iberian branch and an E-W trend in the Brittany one. However, in northern Spain it presents a 180° rotation, sometimes known as the Cantabrian Arc (CA). The relation between both arcs is controversial, being considered either as a single arc due to one tectonic event, or as the result of a polyphasic process. According to the last assumption, there is a later arcuate structure (CA), overlapping a previous major one (IAA). Whatever the models, they must be able to explain the presence of a Variscan sinistral transpression in Iberia and a dextral one in Armorica, and a deformation spanning from the Devonian to the Upper Carboniferous. Another arcuate structure, in continuity with the CA, the Central-Iberian Arc (CIA) was recently proposed mainly based upon on magnetic anomalies, geometry of major folds and Ordovician paleocurrents. The critical review of the structural, stratigraphic and geophysical data supports both the IAA and the CA, but as independent structures. However, the presence of a CIA is highly questionable and could not be supported. The complex strain pattern of the IAA and the CA could be explained by a Devonian - Carboniferous polyphasic indentation of a Gondwana promontory. In this model the CA is essentially a thin-skinned arc, while the IAA has a more complex and longer evolution that has led to a thick-skinned first order structure. Nevertheless, both arcs are essentially the result of a lithospheric bending process during the Iberian Variscides.

Analysis of the relationship between the monthly temperatures and weather types in Iberian Peninsula

NASA Astrophysics Data System (ADS)

Peña Angulo, Dhais; Trigo, Ricardo; Nicola, Cortesi; José Carlos, González-Hidalgo

2016-04-01

In this study, the relationship between the atmospheric circulation and weather types and the monthly average maximum and minimum temperatures in the Iberian Peninsula is modeled (period 1950-2010). The temperature data used were obtained from a high spatial resolution (10km x 10km) dataset (MOTEDAS dataset, Gonzalez-Hidalgo et al., 2015a). In addition, a dataset of Portuguese temperatures was used (obtained from the Portuguese Institute of Sea and Atmosphere). The weather type classification used was the one developed by Jenkinson and Collison, which was adapted for the Iberian Peninsula by Trigo and DaCamara (2000), using Sea Level Pressure data from NCAR/NCEP Reanalysis dataset (period 1951-2010). The analysis of the behaviour of monthly temperatures based on the weather types was carried out using a stepwise regression procedure of type forward to estimate temperatures in each cell of the considered grid, for each month, and for both maximum and minimum monthly average temperatures. The model selects the weather types that best estimate the temperatures. From the validation model it was obtained the error distribution in the time (months) and space (Iberian Peninsula). The results show that best estimations are obtained for minimum temperatures, during the winter months and in coastal areas. González-Hidalgo J.C., Peña-Angulo D., Brunetti M., Cortesi, C. (2015a): MOTEDAS: a new monthly temperature database for mainland Spain and the trend in temperature (1951-2010). International Journal of Climatology 31, 715-731. DOI: 10.1002/joc.4298

Evolutionary history and molecular epidemiology of rabbit haemorrhagic disease virus in the Iberian Peninsula and Western Europe

PubMed Central

2010-01-01

Background Rabbit haemorrhagic disease virus (RHDV) is a highly virulent calicivirus, first described in domestic rabbits in China in 1984. RHDV appears to be a mutant form of a benign virus that existed in Europe long before the first outbreak. In the Iberian Peninsula, the first epidemic in 1988 severely reduced the populations of autochthonous European wild rabbit. To examine the evolutionary history of RHDV in the Iberian Peninsula, we collected virus samples from wild rabbits and sequenced a fragment of the capsid protein gene VP60. These data together with available sequences from other Western European countries, were analyzed following Bayesian Markov chain Monte Carlo methods to infer their phylogenetic relationships, evolutionary rates and demographic history. Results Evolutionary relationships of RHDV revealed three main lineages with significant phylogeographic structure. All lineages seem to have emerged at a common period of time, between ~1875 and ~1976. The Iberian Peninsula showed evidences of genetic isolation, probably due to geographic barriers to gene flow, and was also the region with the youngest MRCA. Overall, demographic analyses showed an initial increase and stabilization of the relative genetic diversity of RHDV, and a subsequent reduction in genetic diversity after the first epidemic breakout in 1984, which is compatible with a decline in effective population size. Conclusions Results were consistent with the hypothesis that the current Iberian RHDV arose from a single infection between 1869 and 1955 (95% HPD), and rendered a temporal pattern of appearance and extinction of lineages. We propose that the rising positive selection pressure observed throughout the history of RHDV is likely mediated by the host immune system as a consequence of the genetic changes that rendered the virus virulent. Consequently, this relationship is suggested to condition RHDV demographic history. PMID:21067589

First cases of European bat lyssavirus type 1 in Iberian serotine bats: Implications for the molecular epidemiology of bat rabies in Europe.

PubMed

Mingo-Casas, Patricia; Sandonís, Virginia; Obón, Elena; Berciano, José M; Vázquez-Morón, Sonia; Juste, Javier; Echevarría, Juan E

2018-04-01

Previous studies have shown that EBLV-1 strains exclusively hosted by Eptesicus isabellinus bats in the Iberian Peninsula cluster in a specific monophyletic group that is related to the EBLV-1b lineage found in the rest of Europe. More recently, enhanced passive surveillance has allowed the detection of the first EBLV-1 strains associated to Eptesicus serotinus south of the Pyrenees. The aim of this study is the reconstruction of the EBLV-1 phylogeny and phylodynamics in the Iberian Peninsula in the context of the European continent. We have sequenced 23 EBLV-1 strains detected on nine E. serotinus and 14 E. isabellinus. Phylogenetic analyses were performed on the first 400-bp-5' fragment of the Nucleoprotein (N) gene together with other 162 sequences from Europe. Besides, fragments of the variable region of the phosphoprotein (P) gene and the glycoprotein-polymerase (G-L) intergenic region were studied on Spanish samples. Phylogenies show that two of the new EBLV-1a strains from Iberian E. serotinus clustered together with French strains from the North of the Pyrenees, suggesting a recent expansion southwards of this subtype. The remaining seven Iberian strains from E. serotinus grouped, instead, within the cluster linked, so far, to E. isabellinus, indicating that spatial distribution prevails over species specificity in explaining rabies distribution and supporting interspecific transmission. The structure found within the Iberian Peninsula for EBLV-1b is in concordance with that described previously for E. isabellinus. Finally, we have found that the current EBLV-1 European strains could have emerged only 175 years ago according to our evolutionary dynamics analyses.

High-Resolution Analysis of Human Y-Chromosome Variation Shows a Sharp Discontinuity and Limited Gene Flow between Northwestern Africa and the Iberian Peninsula

PubMed Central

Bosch, Elena; Calafell, Francesc; Comas, David; Oefner, Peter J.; Underhill, Peter A.; Bertranpetit, Jaume

2001-01-01

In the present study we have analyzed 44 Y-chromosome biallelic polymorphisms in population samples from northwestern (NW) Africa and the Iberian Peninsula, which allowed us to place each chromosome unequivocally in a phylogenetic tree based on >150 polymorphisms. The most striking results are that contemporary NW African and Iberian populations were found to have originated from distinctly different patrilineages and that the Strait of Gibraltar seems to have acted as a strong (although not complete) barrier to gene flow. In NW African populations, an Upper Paleolithic colonization that probably had its origin in eastern Africa contributed 75% of the current gene pool. In comparison, ∼78% of contemporary Iberian Y chromosomes originated in an Upper Paleolithic expansion from western Asia, along the northern rim of the Mediterranean basin. Smaller contributions to these gene pools (constituting 13% of Y chromosomes in NW Africa and 10% of Y chromosomes in Iberia) came from the Middle East during the Neolithic and, during subsequent gene flow, from Sub-Saharan to NW Africa. Finally, bidirectional gene flow across the Strait of Gibraltar has been detected: the genetic contribution of European Y chromosomes to the NW African gene pool is estimated at 4%, and NW African populations may have contributed 7% of Iberian Y chromosomes. The Islamic rule of Spain, which began in a.d. 711 and lasted almost 8 centuries, left only a minor contribution to the current Iberian Y-chromosome pool. The high-resolution analysis of the Y chromosome allows us to separate successive migratory components and to precisely quantify each historical layer. PMID:11254456

Why Do the Boreal Forest Ecosystems of Northwestern Europe Differ from Those of Western North America?

PubMed Central

Boonstra, Rudy; Andreassen, Harry P.; Boutin, Stan; Hušek, Jan; Ims, Rolf A.; Krebs, Charles J.; Skarpe, Christina; Wabakken, Petter

2016-01-01

Abstract The boreal forest is one of the largest terrestrial biomes on Earth. Conifers normally dominate the tree layer across the biome, but other aspects of ecosystem structure and dynamics vary geographically. The cause of the conspicuous differences in the understory vegetation and the herbivore–predator cycles between northwestern Europe and western North America presents an enigma. Ericaceous dwarf shrubs and 3– to 4-year vole–mustelid cycles characterize the European boreal forests, whereas tall deciduous shrubs and 10-year snowshoe hare–lynx cycles characterize the North American ones. We discuss plausible explanations for this difference and conclude that it is bottom-up: Winter climate is the key determinant of the dominant understory vegetation that then determines the herbivore–predator food-web interactions. The crucial unknown for the twenty-first century is how climate change and increasing instability will affect these forests, both with respect to the dynamics of individual plant and animal species and to their community interactions. PMID:28533563

Smoothing Motion Estimates for Radar Motion Compensation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doerry, Armin W.

2017-07-01

Simple motion models for complex motion environments are often not adequate for keeping radar data coherent. Eve n perfect motion samples appli ed to imperfect models may lead to interim calculations e xhibiting errors that lead to degraded processing results. Herein we discuss a specific i ssue involving calculating motion for groups of pulses, with measurements only available at pulse-group boundaries. - 4 - Acknowledgements This report was funded by General A tomics Aeronautical Systems, Inc. (GA-ASI) Mission Systems under Cooperative Re search and Development Agre ement (CRADA) SC08/01749 between Sandia National Laboratories and GA-ASI. General Atomics Aeronautical Systems, Inc.more » (GA-ASI), an affilia te of privately-held General Atomics, is a leading manufacturer of Remotely Piloted Aircraft (RPA) systems, radars, and electro-optic and rel ated mission systems, includin g the Predator(r)/Gray Eagle(r)-series and Lynx(r) Multi-mode Radar.« less

Disseminated coccidioidomycosis in a captive Indochinese tiger (Panthera tigris corbetti) with chronic renal disease.

PubMed

Helmick, Kelly E; Koplos, Peter; Raymond, James

2006-12-01

A 19-yr-old, 78.2-kg captive female Indochinese tiger (Panthera tigris corbetti) from the El Paso Zoo (El Paso, Texas, USA) with chronic renal disease was euthanized after a 10-day course of anorexia, depression, progressive rear limb weakness, muscle fasciculations, and head tremors. Postmortem findings included pericardial effusion, generalized lymphadenopathy, glomerulosclerosis, glomerular atrophy with membranous glomerulonephropathy, and pancreatic adenocarcinoma. Pyogranulomatous pneumonia, pericarditis, and lymphadenitis were associated with fungal spherules histomorphologically consistent with Coccidioides immitis. Rising antibodies to C. immitis were detected on samples obtained perimortem and 2 mo before euthanasia. Retrospective serology was negative for two additional Indochinese tigers, two Iranian leopards (Panthera pardus saxicolor), two jaguars (Panthera onca), two bobcats (Lynx rufus texensis), two ocelots (Leopardus pardalis), and three Amur leopards (Panthera pardus orientalis) housed at the zoo over an 8-yr period. Despite being located within the endemic region for C. immitis, this is only the second case of coccidioidomycosis reported from this institution.

Why Do the Boreal Forest Ecosystems of Northwestern Europe Differ from Those of Western North America?

PubMed

Boonstra, Rudy; Andreassen, Harry P; Boutin, Stan; Hušek, Jan; Ims, Rolf A; Krebs, Charles J; Skarpe, Christina; Wabakken, Petter

2016-09-01

The boreal forest is one of the largest terrestrial biomes on Earth. Conifers normally dominate the tree layer across the biome, but other aspects of ecosystem structure and dynamics vary geographically. The cause of the conspicuous differences in the understory vegetation and the herbivore-predator cycles between northwestern Europe and western North America presents an enigma. Ericaceous dwarf shrubs and 3- to 4-year vole-mustelid cycles characterize the European boreal forests, whereas tall deciduous shrubs and 10-year snowshoe hare-lynx cycles characterize the North American ones. We discuss plausible explanations for this difference and conclude that it is bottom-up: Winter climate is the key determinant of the dominant understory vegetation that then determines the herbivore-predator food-web interactions. The crucial unknown for the twenty-first century is how climate change and increasing instability will affect these forests, both with respect to the dynamics of individual plant and animal species and to their community interactions.

Segmentation and classification of road markings using MLS data

NASA Astrophysics Data System (ADS)

Soilán, Mario; Riveiro, Belén; Martínez-Sánchez, Joaquín; Arias, Pedro

2017-01-01

Traffic signs are one of the most important safety elements in a road network. Particularly, road markings provide information about the limits and direction of each road lane, or warn the drivers about potential danger. The optimal condition of road markings contributes to a better road safety. Mobile Laser Scanning technology can be used for infrastructure inspection and specifically for traffic sign detection and inventory. This paper presents a methodology for the detection and semantic characterization of the most common road markings, namely pedestrian crossings and arrows. The 3D point cloud data acquired by a LYNX Mobile Mapper system is filtered in order to isolate reflective points in the road, and each single element is hierarchically classified using Neural Networks. State of the art results are obtained for the extraction and classification of the markings, with F-scores of 94% and 96% respectively. Finally, data from classified markings are exported to a GIS layer and maintenance criteria based on the aforementioned data are proposed.

Population trends for common prairie pothole carnivores

USGS Publications Warehouse

Greenwood, Raymond J.; Sovada, Marsha A.; Mac, M.J.; Opler, P.A.; Puckett Haecker, C. E.; Doran, P.D.

1998-01-01

Since settlement of the prairie pothole region of the northern Great Plains by Europeans in the late 1800’s, carnivore populations have changed considerably—mostly due to habitat alteration and humaninflicted mortality. At least 19 species of carnivorous mammals once occurred in the prairie pothole region (Jones et al. 1983). Presently, only eight are common throughout the region—coyote, red fox, raccoon, American badger, striped skunk, mink, ermine, and long-tailed weasel (Sargeant et al. 1993). Other species that occur locally or intermittently are mountain lion, lynx, bobcat, gray wolf, gray fox, swift fox, spotted skunk, and least weasel. Grizzly bears, wolverines, and river otters once occurred in the region but are now extirpated. Competition among species affects the distribution of coyotes, wolves, and foxes (Carbyn 1982; Rudzinski et al. 1982; Sargeant et al. 1987; Bailey 1992). These larger canids are keystone species that suppress the distribution of smaller canids (Johnson and Sargeant 1977; Dekker 1989; Johnson et al. 1989).

Metabolite profiling on apple volatile content based on solid phase microextraction and gas-chromatography time of flight mass spectrometry.

PubMed

Aprea, Eugenio; Gika, Helen; Carlin, Silvia; Theodoridis, Georgios; Vrhovsek, Urska; Mattivi, Fulvio

2011-07-15

A headspace SPME GC-TOF-MS method was developed for the acquisition of metabolite profiles of apple volatiles. As a first step, an experimental design was applied to find out the most appropriate conditions for the extraction of apple volatile compounds by SPME. The selected SPME method was applied in profiling of four different apple varieties by GC-EI-TOF-MS. Full scan GC-MS data were processed by MarkerLynx software for peak picking, normalisation, alignment and feature extraction. Advanced chemometric/statistical techniques (PCA and PLS-DA) were used to explore data and extract useful information. Characteristic markers of each variety were successively identified using the NIST library thus providing useful information for variety classification. The developed HS-SPME sampling method is fully automated and proved useful in obtaining the fingerprint of the volatile content of the fruit. The described analytical protocol can aid in further studies of the apple metabolome. Copyright © 2011 Elsevier B.V. All rights reserved.

Re-introduction of Bobcats to Cumberland Island, Georgia, USA: Status and lessons learned after 25 years

USGS Publications Warehouse

Diefenbach, Duane R.; Hansen, Leslie A.; Miller-Butterworth, Cassandra; Bohling, Justin H.; Warren, Robert J.; Conroy, Michael J.; Soorae, Pritpal S.

2013-01-01

The bobcat (Lynx rufus) is a medium-sized spotted cat (4 - 18 kg), widely distributed in North America. Bobcats are legally harvestable in most of their range, and are currently classified as Least Concern by IUCN and listed in Appendix II of CITES, due to similarity of appearance with other spotted cat species. Bobcats in the coastal plain region of Georgia, USA, occur at densities of 0.4 - 0.6 per km2. The most common prey of bobcats across most of their range are cottontail rabbit species (Sylvilagus sp). Cumberland Island is the largest of Georgia’s Atlantic coastal barrier islands. Since 1972, approximately 80% of the island has been administered by the National Park Service as Cumberland Island National Seashore (CINS). The island has a subtropical climate and contains approximately 85 km2of upland habitat. It is accessible only by boat or small plane. Thirty-two bobcats were released on CINS during 1988 – 1989.

Composition and microstructure of Roman metallic artefacts of Southwestern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Valério, P.; Voráčová, E.; Silva, R. J. C.; Araújo, M. F.; Soares, A. M. M.; Arruda, A. M.; Pereira, C.

2015-10-01

The Roman invasion introduces new alloys and metallurgical practices in Iberian Peninsula. The southwestern end of this region has many evidences of connections with the Roman World, but there are no studies about the manufacture and use of copper-based artefacts during this period. Therefore, a set of about 20 ornaments, tools and small attachments recovered at the Roman sites of Monte Molião and Cidade das Rosas was studied by an analytical approach combining micro-EDXRF, optical microscopy, SEM-EDS and Vickers microhardness testing. The artefact composition shows a good correlation with function, namely pure copper for nails and rivets, low-tin bronze (2-6 wt% Sn) for basic tools, high-tin bronze (14 wt% Sn) for fibulae and high-lead bronze (19 wt% Pb) for a decorated jug handle. The manufacture also depends on function because most artefacts were subjected to thermomechanical processing, except the ornaments that would not benefit from post-casting work. Brass and gunmetal were only present in the site with a later chronology. A metallurgy visibly ruled by economical, aesthetical and technological concerns reinforces the evidences about the total integration of Southwestern Iberian Peninsula in the Roman World, but further studies will be essential to determine the evolution of copper-based alloys in Lusitania under Roman influence.

Downscaling of global climate change estimates to regional scales: An application to Iberian rainfall in wintertime

DOE Office of Scientific and Technical Information (OSTI.GOV)

von Storch, H.; Zorita, E.; Cubasch, U.

A statistical strategy to deduct regional-scale features from climate general circulation model (GCM) simulations has been designed and tested. The main idea is to interrelate the characteristic patterns of observed simultaneous variations of regional climate parameters and of large-scale atmospheric flow using the canonical correlation technique. The large-scale North Atlantic sea level pressure (SLP) is related to the regional, variable, winter (DJF) mean Iberian Peninsula rainfall. The skill of the resulting statistical model is shown by reproducing, to a good approximation, the winter mean Iberian rainfall from 1900 to present from the observed North Atlantic mean SLP distributions. It ismore » shown that this observed relationship between these two variables is not well reproduced in the output of a general circulation model (GCM). The implications for Iberian rainfall changes as the response to increasing atmospheric greenhouse-gas concentrations simulated by two GCM experiments are examined with the proposed statistical model. In an instantaneous [open quotes]2 CO[sub 2][close quotes] doubling experiment, using the simulated change of the mean North Atlantic SLP field to predict Iberian rainfall yields, there is an insignificant increase of area-averaged rainfall of I mm/month, with maximum values of 4 mm/month in the northwest of the peninsula. In contrast, for the four GCM grid points representing the lberian Peninsula, the change is - 10 mm/month, with a minimum of - 19 mm/month in the southwest. In the second experiment, with the IPCC scenario A ([open quotes]business as usual[close quotes]) increase of CO[sub 2], the statistical-model results partially differ from the directly simulated rainfall changes: in the experimental range of 100 years, the area-averaged rainfall decreases by 7 mm/month (statistical model), and by 9 mm/month (GCM); at the same time the amplitude of the interdecadal variability is quite different. 17 refs., 10 figs.« less

A comparison of daily evaporation downscaled using WRFDA model and GLEAM dataset over the Iberian Peninsula.

NASA Astrophysics Data System (ADS)

José González-Rojí, Santos; Sáenz, Jon; Ibarra-Berastegi, Gabriel

2017-04-01

GLEAM dataset was presented a few years ago and since that moment, it has just been used for validation of evaporation in a few places of the world (Australia and Africa). The Iberian Peninsula is composed of different soil types and it is affected by different weather regimes, with different climate regions. It is this feature which makes it a very interesting zone for the study of the meteorological cycle, including evaporation. For that purpose, a numerical downscaling exercise over the Iberian Peninsula was run nesting the WRF model inside ERA Interim. Two model configurations were tested in two experiments spanning the period 2010-2014 after a one-year spin-up (2009). In the first experiment (N), boundary conditions drive the model. The second experiment (D) is configured the same way as the N case, but 3DVAR data assimilation is run every six hours (00Z, 06Z, 12Z and 18Z) using observations obtained from the PREPBUFR dataset. For both N and D runs and ERA Interim, the evaporation of the model runs was compared to GLEAM v3.0b and v3.0c datasets over the Iberian Peninsula, both at the daily and monthly time scales. GLEAM v3.0a was not used for validation as it uses for forcing radiation and air temperature data from ERA Interim. Results show that the experiment with data assimilation (D) improve the results obtained for N experiment. Moreover, correlations values are comparable to the ones obtained with ERA Interim. However, some negative correlation values are observed at Portuguese and Mediterranean coasts for both WRF runs. All of these problematic points are considered as urban sites by the NOAH land surface model. Because of that, the model is not able to simulate a correct evaporation value. Even with these discrepancies, better results than for ERA Interim are observed for seasonal Biases and daily RMSEs over Iberian Peninsula, obtaining the best values inland. Minimal differences are observed for the two GLEAM datasets selected.

Persistent genetic signatures of colonization in Brachionus manjavacas rotifers in the Iberian Peninsula.

PubMed

Gómez, Africa; Montero-Pau, Javier; Lunt, David H; Serra, Manuel; Campillo, Sergi

2007-08-01

Recent phylogeographical assessments have consistently shown that continental zooplankton display high levels of population subdivision, despite the high dispersal capacity of their diapausing propagules. As such, there is an apparent paradox between observed cosmopolitanism in the zooplankton that is associated with long-distance dispersal, and strong phylogeographical structures at a regional scale. Such population dynamics, far from migration-drift equilibrium, have been shown in the rotifer species complex Brachionus plicatilis, a group of over a dozen species inhabiting salt lakes and coastal lagoons worldwide. Here we present the mitochondrial DNA phylogeography of one of these species, Brachionus manjavacas, in the Iberian Peninsula, where it often co-occurs with the morphologically similar species B. plicatilis sensu stricto. We obtained sequences from 233 individuals from diapausing eggs and clonal cultures from 16 lakes in the Iberian Peninsula, and a Tunisian lake. Two strongly supported deep mitochondrial DNA clades were found (A and B). Phylogenetic and nested clade analysis showed that clade A has a strong phylogeographical structure, with a strong similarity of phylogeographical patterns between B. manjavacas clade A and B. plicatilis s.s. These include (i) signatures of allopatric fragmentation between central and southern populations, and (ii) range expansions in the Iberian Peninsula, both likely to have occurred during the Pleistocene. We find evidence for a glacial refugium in the Guadiana basin. Clades A and B co-occurred in several of these lakes because of range expansion and secondary contact between both clades. The co-occurrence between B. plicatilis s.s. and B. manjavacas is not recent, and both species might have experienced similar environmental challenges during the Pleistocene. The strong correlation of genetic and geographical distance found suggests that historical events can lead to such correlation, mirroring the effects of

Biogeography of Iberian freshwater fishes revisited: The roles of historical versus contemporary constraints

USGS Publications Warehouse

Filipe, Ana F.; Araújo, Miguel B.; Doadrio, Ignacio; Angermeier, Paul L.; Collares-Pereira, Maria J.

2009-01-01

Main conclusions The results support the hypothesis that historical factors exert greater constraints on native freshwater fish assemblages in the Iberian Peninsula than do current environmental factors. After examining patterns of assemblage variation across space, as evidenced by the biogeographical provinces, we discuss the likely dispersal and speciation events that underlie these patterns. 

Influence of finite-time Lyapunov exponents on winter precipitation over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Garaboa-Paz, Daniel; Lorenzo, Nieves; Pérez-Muñuzuri, Vicente

2017-05-01

Seasonal forecasts have improved during the last decades, mostly due to an increase in understanding of the coupled ocean-atmosphere dynamics, and the development of models able to predict the atmosphere variability. Correlations between different teleconnection patterns and severe weather in different parts of the world are constantly evolving and changing. This paper evaluates the connection between winter precipitation over the Iberian Peninsula and the large-scale tropospheric mixing over the eastern Atlantic Ocean. Finite-time Lyapunov exponents (FTLEs) have been calculated from 1979 to 2008 to evaluate this mixing. Our study suggests that significant negative correlations exist between summer FTLE anomalies and winter precipitation over Portugal and Spain. To understand the mechanisms behind this correlation, summer anomalies of the FTLE have also been correlated with other climatic variables such as the sea surface temperature (SST), the sea level pressure (SLP) or the geopotential. The East Atlantic (EA) teleconnection index correlates with the summer FTLE anomalies, confirming their role as a seasonal predictor for winter precipitation over the Iberian Peninsula.

Efficiency of mitochondrial DNA restriction analysis and RAPD-PCR to characterize yeasts growing on dry-cured Iberian ham at the different geographic areas of ripening.

PubMed

Andrade, María J; Rodríguez, Mar; Casado, Eva; Córdoba, Juan J

2010-03-01

The efficiency of mitochondrial DNA (mtDNA) restriction analysis and random amplification of polymorphic DNA (RAPD)-PCR to characterize yeasts growing on dry-cured Iberian ham was evaluated. Besides, the distribution of the main species and biotypes of yeasts in the different ripening areas of this product was investigated. MtDNA restriction analysis allowed yeast characterization at species and strain level. RAPD-PCR with the primers (GACA)(4) and (GAC)(5) was inappropriate for characterization at species level. Most of the mtDNA restriction patterns detected in dry-cured Iberian ham were consistent with Debaryomyces hansenii. Several yeasts biotypes were associated to specific geographic areas of dry-cured Iberian ham ripening. Copyright 2009 Elsevier Ltd. All rights reserved.

High resolution projections for the western Iberian coastal low level jet in a changing climate

NASA Astrophysics Data System (ADS)

Soares, Pedro M. M.; Lima, Daniela C. A.; Cardoso, Rita M.; Semedo, Alvaro

2017-09-01

The Iberian coastal low-level jet (CLLJ) is one of the less studied boundary layer wind jet features in the Eastern Boundary Currents Systems (EBCS). These regions are amongst the most productive ocean ecosystems, where the atmosphere-land-ocean feedbacks, which include marine boundary layer clouds, coastal jets, upwelling and inland soil temperature and moisture, play an important role in defining the regional climate along the sub-tropical mid-latitude western coastal areas. Recently, the present climate western Iberian CLLJ properties were extensively described using a high resolution regional climate hindcast simulation. A summer maximum frequency of occurrence above 30 % was found, with mean maximum wind speeds around 15 ms-1, between 300 and 400 m heights (at the jet core). Since the 1990s the climate change impact on the EBCS is being studied, nevertheless some lack of consensus still persists regarding the evolution of upwelling and other components of the climate system in these areas. However, recently some authors have shown that changes are to be expected concerning the timing, intensity and spatial homogeneity of coastal upwelling, in response to future warming, especially at higher latitudes, namely in Iberia and Canaries. In this study, the first climate change assessment study regarding the Western Iberian CLLJ, using a high resolution (9 km) regional climate simulation, is presented. The properties of this CLLJ are studied and compared using two 30 years simulations: one historical simulation for the 1971-2000 period, and another simulation for future climate, in agreement with the RCP8.5 scenario, for the 2071-2100 period. Robust and consistent changes are found: (1) the hourly frequency of occurrence of the CLLJ is expected to increase in summer along the western Iberian coast, from mean maximum values of around 35 % to approximately 50 %; (2) the relative increase of the CLLJ frequency of occurrence is higher in the north off western Iberia; (3

Gram-positive, catalase-positive cocci from dry cured Iberian ham and their enterotoxigenic potential.

PubMed Central

Rodríguez, M; Núñez, F; Córdoba, J J; Bermúdez, E; Asensio, M A

1996-01-01

Iberian ham is an uncooked, cured meat product ripened under natural uncontrolled conditions for 18 to 24 months. Gram-positive, catalase-positive cocci are the main microbial population in Iberian ham for most of the ripening time. Since some of these organisms are able to produce enterotoxins, adequate characterization and toxicological study are needed. For this, 1,327 gram-positive, catalase-positive cocci, isolated from Iberian hams at different stages and locations, were characterized by physiological and biochemical tests. Selected isolates were further characterized by guanine-cytosine (G+C) content and restriction enzyme analysis of genes coding for 16S rRNA. The toxigenic potential of these organisms was tested with specific DNA gene probes for staphylococcal enterotoxins A, B, C, and D and confirmed by semiquantitative sandwich enzyme immunoassay. The majority of the isolates were identified as Staphylococcus spp. and Micrococcus spp. Non-identified gram-positive, catalase-positive cocci which were moderately halophilic and showed a 42 to 52% G+C content were detected. A great variety of staphylococcal strains were found within the different species at any sampling time. Two strains of Staphylococcus xylosus, one Staphylococcus cohnii strain, and four of the non-identified organisms with 42 to 52% G+C contents hybridized with some of the DNA probes for C and D staphylococcal enterotoxin genes. S. xylosus hybridizing with C-enterotoxin probe reacted with both C and D enterotoxins in the immunological test. In addition, enterotoxin D was confirmed in the nonidentified strains. Some toxigenic organisms were isolated from the final product, posing a health hazard for the consumer. PMID:8787389

To Eat or Not To Eat? The Diet of the Endangered Iberian Wolf (Canis lupus signatus) in a Human-Dominated Landscape in Central Portugal

PubMed Central

Torres, Rita Tinoco; Silva, Nicole; Brotas, Gonçalo; Fonseca, Carlos

2015-01-01

Livestock predation by large carnivores and their persecution by local communities are major conservation concerns. In order to prevent speculations and reduce conflicts, it is crucial to get detailed and accurate data on predators’ dietary ecology, which is particularly important in human dominated landscapes where livestock densities are high. This is the case of the endangered Iberian wolf in Portugal, an endemic subspecies of the Iberian Peninsula, which has seen its population distribution and abundance decline throughout the 20th century. Accordingly, the diet of the Iberian wolf was analyzed, using scat analysis, in a humanized landscape in central Portugal. From 2011 to 2014, a total of 295 wolf scats were collected from transects distributed throughout the study area, prospected on a monthly basis. Scat analysis indicated a high dependence of Iberian wolf on livestock. Domestic goat predominated the diet (62% of the scats), followed by cow (20%) and sheep (13%); the only wild ungulate present in the scat analysis was the wild boar (4% of the scats). Our results show that even though livestock constitute most part of wolves diet, different livestock species may represent different predation opportunities. We conclude that the high levels of livestock consumption may be a result of low diversity and density of wild ungulates that settles livestock as the only abundant prey for wolves. Our findings help on the understanding of the Iberian wolf feeding ecology and have implications for conflict management strategies. Finally, management implications are discussed and solutions are recommended. PMID:26030294

Daily gridded datasets of snow depth and snow water equivalent for the Iberian Peninsula from 1980 to 2014

NASA Astrophysics Data System (ADS)

Alonso-González, Esteban; López-Moreno, J. Ignacio; Gascoin, Simon; García-Valdecasas Ojeda, Matilde; Sanmiguel-Vallelado, Alba; Navarro-Serrano, Francisco; Revuelto, Jesús; Ceballos, Antonio; Jesús Esteban-Parra, María; Essery, Richard

2018-02-01

We present snow observations and a validated daily gridded snowpack dataset that was simulated from downscaled reanalysis of data for the Iberian Peninsula. The Iberian Peninsula has long-lasting seasonal snowpacks in its different mountain ranges, and winter snowfall occurs in most of its area. However, there are only limited direct observations of snow depth (SD) and snow water equivalent (SWE), making it difficult to analyze snow dynamics and the spatiotemporal patterns of snowfall. We used meteorological data from downscaled reanalyses as input of a physically based snow energy balance model to simulate SWE and SD over the Iberian Peninsula from 1980 to 2014. More specifically, the ERA-Interim reanalysis was downscaled to 10 km × 10 km resolution using the Weather Research and Forecasting (WRF) model. The WRF outputs were used directly, or as input to other submodels, to obtain data needed to drive the Factorial Snow Model (FSM). We used lapse rate coefficients and hygrobarometric adjustments to simulate snow series at 100 m elevations bands for each 10 km × 10 km grid cell in the Iberian Peninsula. The snow series were validated using data from MODIS satellite sensor and ground observations. The overall simulated snow series accurately reproduced the interannual variability of snowpack and the spatial variability of snow accumulation and melting, even in very complex topographic terrains. Thus, the presented dataset may be useful for many applications, including land management, hydrometeorological studies, phenology of flora and fauna, winter tourism, and risk management. The data presented here are freely available for download from Zenodo (https://doi.org/10.5281/zenodo.854618). This paper fully describes the work flow, data validation, uncertainty assessment, and possible applications and limitations of the database.

Whole-genome mapping reveals a large chromosomal inversion on Iberian Brucella suis biovar 2 strains.

PubMed

Ferreira, Ana Cristina; Dias, Ricardo; de Sá, Maria Inácia Corrêa; Tenreiro, Rogério

2016-08-30

Optical mapping is a technology able to quickly generate high resolution ordered whole-genome restriction maps of bacteria, being a proven approach to search for diversity among bacterial isolates. In this work, optical whole-genome maps were used to compare closely-related Brucella suis biovar 2 strains. This biovar is the unique isolated in domestic pigs and wild boars in Portugal and Spain and most of the strains share specific molecular characteristics establishing an Iberian clonal lineage that can be differentiated from another lineage mainly isolated in several Central European countries. We performed the BamHI whole-genome optical maps of five B. suis biovar 2 field strains, isolated from wild boars in Portugal and Spain (three from the Iberian lineage and two from the Central European one) as well as of the reference strain B. suis biovar 2 ATCC 23445 (Central European lineage, Denmark). Each strain showed a distinct, highly individual configuration of 228-231 BamHI fragments. Nevertheless, a low divergence was globally observed in chromosome II (1.6%) relatively to chromosome I (2.4%). Optical mapping also disclosed genomic events associated with B. suis strains in chromosome I, namely one indel (3.5kb) and one large inversion (944kb). By using targeted-PCR in a set of 176 B. suis strains, including all biovars and haplotypes, the indel was found to be specific of the reference strain ATCC 23445 and the large inversion was shown to be an exclusive genomic marker of the Iberian clonal lineage of biovar 2. Copyright © 2016 Elsevier B.V. All rights reserved.

Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae).

PubMed

Ribera, Ignacio; Vogler, Alfried P

2004-01-01

The Mediterranean basin is an area of high diversity and endemicity, but the age and origin of its fauna are still largely unknown. Here we use species-level phylogenies based on approximately 1300 base pairs of the genes 16S rRNA and cytochrome oxidase I to establish the relationships of 27 of the 34 endemic Iberian species of diving beetles in the family Dytiscidae, and to investigate their level of divergence. Using a molecular clock approach, 18-19 of these species were estimated to be of Pleistocene origin, with four to six of them from the Late Pleistocene ( approximately 100 000 years). A second, lower speciation frequency peak was assigned to Late Miocene or Early Pliocene. Analysis of the distributional ranges showed that endemic species placed in the tip nodes of the trees are significantly more likely to be allopatric with their sisters than endemic species at lower node levels. Allopatric sister species are also significantly younger than sympatric clades, in agreement with an allopatric mode of speciation and limited subsequent range movement. These results strongly suggest that for some taxa Iberian populations were isolated during the Pleistocene long enough to speciate, and apparently did not expand their ranges to recolonize areas north of the Pyrenees. This is in contradiction to observations from fossil beetles in areas further north, which document large range movements associated with the Pleistocene glacial cycles hypothesized to suppress population isolation and allopatric speciation.

UV filters bioaccumulation in fish from Iberian river basins.

PubMed

Gago-Ferrero, Pablo; Díaz-Cruz, M Silvia; Barceló, Damià

2015-06-15

The occurrence of eight organic UV filters (UV-Fs) was assessed in fish from four Iberian river basins. This group of compounds is extensively used in cosmetic products and other industrial goods to avoid the damaging effects of UV radiation, and has been found to be ubiquitous contaminants in the aquatic ecosystem. In particular, fish are considered by the scientific community to be the most feasible organism for contamination monitoring in aquatic ecosystems. Despite that, studies on the bioaccumulation of UV-F are scarce. In this study fish samples from four Iberian river basins under high anthropogenic pressure were analysed by liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). Benzophenone-3 (BP3), ethylhexyl methoxycinnamate (EHMC), 4-methylbenzylidene camphor (4MBC) and octocrylene (OC) were the predominant pollutants in the fish samples, with concentrations in the range of ng/g dry weight (d.w.). The results indicated that most polluted area corresponded to Guadalquivir River basin, where maximum concentrations were found for EHMC (241.7 ng/gd.w.). Sediments from this river basin were also analysed. Lower values were observed in relation to fish for OC and EHMC, ranging from below the limits of detection to 23 ng/gd.w. Accumulation levels of UV-F in the fish were used to calculate biota-sediment accumulation factors (BSAFs). These values were always below 1, in the range of 0.04-0.3, indicating that the target UV-Fs are excreted by fish only to some extent. The fact that the highest concentrations were determined in predators suggests that biomagnification of UV-F may take place along the freshwater food web. Copyright © 2015. Published by Elsevier B.V.

Disentangling migratory routes and wintering grounds of Iberian near-threatened European Rollers Coracias garrulus.

PubMed

Rodríguez-Ruiz, Juan; de la Puente, Javier; Parejo, Deseada; Valera, Francisco; Calero-Torralbo, Miguel A; Reyes-González, José M; Zajková, Zuzana; Bermejo, Ana; Avilés, Jesús M

2014-01-01

Long-distance migrants are suffering drastic declines in the last decades. Causes beneath this problem are complex due to the wide spatial and temporal scale involved. We aim to reveal migratory routes, stopover areas, wintering grounds, and migratory strategies for the most southwestern populations of the near-threatened European Roller Coracias garrulus in order to identify conservation key areas for the non-breeding stage of this species. To this end, we used tracking data from seven satellite transmitters fitted to birds breeding in different populations throughout the Iberian Peninsula and four geolocators fitted to individuals in a southeastern Iberian population. Precise satellite data were used to describe daily activity patterns and speed in relation to the main regions crossed during the migration. Individuals from the most southwestern Iberian populations made a detour towards the Atlantic African coast whereas those from northeastern populations followed a straight north-to-south route. We identified important stopover areas in the Sahel belt, mainly in the surroundings of the Lake Chad, and wintering grounds on southwestern Africa farther west than previously reported for the species. Concerning the migratory strategy, satellite data revealed: 1) a mainly nocturnal flying activity, 2) that migration speed depended on the type of crossed habitat, with higher average speed while crossing the desert; and 3) that the migration was slower and lasted longer in autumn than in spring. The studied populations showed weak migratory connectivity, suggesting the confluence of birds from a wide range of breeding grounds in a restricted wintering area. Therefore, we suggest to target on defining precisely key areas for this species and identifying specific threats in them in order to develop an appropriate global conservation programme for the European Roller.

Identification and characterisation of regional ozone episodes in the southwest of the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Domínguez-López, D.; Vaca, F.; Hernández-Ceballos, M. A.; Bolívar, J. P.

2015-02-01

Tropospheric ozone is considered one of the most significant air pollutants due to its negative effects on human health, agricultural crops, ecosystems and climate. The features of the southwest of the Iberian Peninsula (high temperatures and high solar radiation, the presence of the Guadalquivir basin and sources of precursors) favour the occurrence of episodes of high concentrations that cause exceedances of legal thresholds with relative frequency. Despite this, no study examining regional ozone episodes has been carried out in this region until now. In the present work a surface hourly ozone dataset (2003-2006) measured at 11 representative stations located in the southwest of the Iberian Peninsula (western Andalusia) was analysed in order to identify and characterise, for the first time, the regional ozone episodes that occur in this area. Using a statistical criterion, eight regional episodes were identified and analysed. The analysis of synoptic weather patterns revealed that these episodes occur in conjunction with two different synoptic conditions (high surface pressure either close to the British Isles or over the Atlantic Ocean). Both conditions generate weak isobaric surface pressure over the Iberian Peninsula, favouring the establishment of easterly winds at 500 m and the development of winds with two main prevailing directions (southwest-northwest, following the Guadalquivir basin) in the study area. During episodic days ozone follows a similar daily cycle to that observed on non-episode summer days, although the levels reached during the former are higher. In both cases, a direct relationship between the daily ozone cycle and the local wind regimen was not observed. This therefore seems to indicate that the daily cycle followed by ozone is mainly regulated by the precursor emissions produced in the environment, by the temperature changes taking place during the day and by the influence of the lower troposphere during anticyclonic weather conditions.

RX J0848.6+4453: The evolution of galaxy sizes and stellar populations in A z = 1.27 cluster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jørgensen, Inger; Chiboucas, Kristin; Schiavon, Ricardo P.

2014-12-01

RX J0848.6+4453 (Lynx W) at redshift 1.27 is part of the Lynx Supercluster of galaxies. We present an analysis of the stellar populations and star formation history for a sample of 24 members of the cluster. Our study is based on deep optical spectroscopy obtained with Gemini North combined with imaging data from Hubble Space Telescope. Focusing on the 13 bulge-dominated galaxies for which we can determine central velocity dispersions, we find that these show a smaller evolution with redshift of sizes and velocity dispersions than reported for field galaxies and galaxies in poorer clusters. Our data show that themore » galaxies in RX J0848.6+4453 populate the fundamental plane (FP) similar to that found for lower-redshift clusters. The zero-point offset for the FP is smaller than expected if the cluster's galaxies are to evolve passively through the location of the FP we established in our previous work for z = 0.8-0.9 cluster galaxies and then to the present-day FP. The FP zero point for RX J0848.6+4453 corresponds to an epoch of last star formation at z{sub form}=1.95{sub −0.15}{sup +0.22}. Further, we find that the spectra of the galaxies in RX J0848.6+4453 are dominated by young stellar populations at all galaxy masses and in many cases show emission indicating low-level ongoing star formation. The average age of the young stellar populations as estimated from the strength of the high-order Balmer line Hζ is consistent with a major star formation episode 1-2 Gyr prior, which in turn agrees with z {sub form} = 1.95. These galaxies dominated by young stellar populations are distributed throughout the cluster. We speculate that low-level star formation has not yet been fully quenched in the center of this cluster, possibly because the cluster is significantly poorer than other clusters previously studied at similar redshifts, which appear to have very little ongoing star formation in their centers. The mixture in RX J0848.6+4453 of passive galaxies with young

DNA analysis of hair and scat collected along snow tracks to document the presence of Canada Lynx.

Treesearch

Kevin S. McKelvey; Jeffrey von Kienast; Keith B. Aubry; Gary M. Koehler; Bejamin T. Maletzke; John R. Squires; Edward L. Lindquist; Steve Loch; Michael K. Schwartz

2006-01-01

Snow tracking is often used to inventory carnivore communities, but species identification using this method can produce ambiguous and misleading results. DNA can be extracted from hair and scat samples collected from tracks made in snow. Using DNA analysis could allow positive track identification across a broad range of snow conditions, thus increasing survey...

Conservation of lynx in the United States: A systematic approach to closing critical knowledge gaps [Chapter 17

Treesearch

Keith B. Aubry; Leonard F. Ruggiero; John R. Squires; Kevin S. McKelvey; Gary M. Koehler; Steven W. Buskirk; Charles J. Krebs

2000-01-01

Large-scale ecological studies and assessments are often implemented only after the focus of study generates substantial social, political, or legal pressure to take action (e.g., Thomas et al. 1990; Ruggiero et al. 1991; FEMAT 1993). In such a funding environment, the coordinated planning of research may suffer as the pressure to produce results escalates. To avoid...

Toward a defensible lynx conservation strategy: A framework for planning in the face of uncertainty [Chapter 1

Treesearch

Leonard F. Ruggiero; Kevin S. McKelvey

2000-01-01

On April 2, 1993, the incumbent U.S. President traveled to Portland, Oregon, to intervene in a national political crisis engendered by public concern over the conservation of native wildlife on public lands. Environmentalists had successfully used existing statutes, most notably the National Forest Management Act and pursuant regulations, to shut down timber industry...

Experimental transmission of Cystoisospora felis- like coccidium from bobcat (Lynx rufus) to the domestic cat (Felis catus)

USDA-ARS?s Scientific Manuscript database

Cystoisospora felis is an ubiquitous coccidian of cats. The domestic cat (Felis catus) is its definitive host and several mammalian and avian species are its optional intermediate/transport hosts. Nothing is known if it is transmissible to wild felids. In the present study C. felis-like oocysts were...

The Late Cretaceous Alkaline Igneous Province in the Iberian Peninsula, and its tectonic significance

NASA Astrophysics Data System (ADS)

Rock, N. M. S.

1982-04-01

The Iberian Province consists of the following: the three subvolcanic, syenitic, major intrusive complexes of Monchique, Sines and Sintra in W. and SW Portugal, together with their basanitic/lamprophyric minor intrusive suites; basanitic volcanic complexes around Lisbon; at least some of a widespread suite of basanitic to theralitic minor intrusives in west central Portugal; about 80 small basanitic/lamprophyric to nepheline syenitic intrusions scattered through the Pyrenees, NE Spain, the French Corbières, and off the coast of NW Spain; and the Ormonde Seamount of the Gorringe Bank off the SW coast of Portugal. Most of these occurrences have been dated isotopically or from field evidence as Late Cretaceous. Geological and petrological details of the various occurrences are compiled and reviewed. Primary basanitic magmas were probably parental to the entire Province, and generated syenitic magmas by differentiation processes; oversaturated rocks were produced by alkali loss and perhaps also by crustal involvement. The Iberian Province is related to the opening of the N. Atlantic, specifically that of the Bay of Biscay.

A New Species of Haplophyllum A. Juss. (Rutaceae) from the Iberian Peninsula: Evidence from Morphological, Karyological and Molecular Analyses

PubMed Central

NAVARRO, F. B.; SUÁREZ-SANTIAGO, V. N.; BLANCA, G.

2004-01-01

• Background and Aims The discovery of a new species, Haplophyllum bastetanum F.B. Navarro, V.N. Suárez-Santiago & Blanca sp. nov., in the south-east of Spain has prompted the comparative study of species of the Iberian Peninsula, and others related, through morphological, cytogenetic, molecular, distributional and ecological characterization. • Methods The morphological study involved a quantitative analysis of the species present in the Iberian Peninsula and a comparative analysis of the morphological characteristics between H. bastetanum and other related species. Mitotic analyses were made with root meristems taken from germinating seeds. Phylogenetic analyses of the internal transcribed spacer sequences of nuclear ribosomal DNA were performed using neighbour-joining (NJ) and maximum-parsimony methods. • Key Results Haplophyllum bastetanum is a diploid species (2n = 18) distinguished primarily for its non-trifoliate glabrous leaves, lanceolate sepals, dark-green petals with a dorsal band of hairs, and a highly hairy ovary with round-apex locules. The other two Iberian species (H. linifolium and H. rosmarinifolium) are tetraploid (2n = 36) and have yellow petals. Both phylogenetic methods generated a well-supported clade grouping H. linifolium with H. rosmarinifolium. In the NJ tree, the H. linifolium–H. rosmarinifolium clade is a sister group to H. bastetanum, while in the parsimony analysis this occurred only when the gaps were coded as a fifth base and the characters were reweighted according to the rescaled consistency index. This latter group is supported by the sequence divergence among taxa. • Conclusions The phylogenies established from DNA sequences together with morphological and cytogenetic analyses support the separation of H. bastetanum as a new species. The results suggest that the change in the number of chromosomes may be the key mechanism of speciation of the genus Haplophyllum in the Iberian Peninsula. An evolutionary scheme for them

Assessing the Snow Advance Index as potential predictor of winter streamflow of the Iberian Peninsula Rivers

NASA Astrophysics Data System (ADS)

Hidalgo-Muñoz, José Manuel; García-Valdecasas-Ojeda, Matilde; Raquel Gámiz-Fortis, Sonia; Castro-Díez, Yolanda; Jesús Esteban-Parra, María

2015-04-01

This study examines the ability of the Eurasian snow cover increase during the previous October as potential predictor of winter streamflow in the Iberian Peninsula Rivers. The streamflow data base used has been provided by the Center for Studies and Experimentation of Public Works, CEDEX. Series from gauging stations and reservoirs with less than 10% of missing data (filled by regression with well correlated neighboring stations) have been considered. The homogeneity of these series has been evaluated through the Pettit test and degree of human alteration by the Common Area Index. The application of these criteria led to the selection of 382 streamflow time series homogeneously distributed over the Iberian Peninsula, covering the period 1975-2008. For this streamflow data, winter seasonal values were obtained by averaging the monthly values from January to March. The recently proposed Snow Advance Index (SAI) was employed to monitor the snow cover increase during previous October. The stability of the correlations was the criterion followed to establish if SAI could be considered as potential predictor of winter streamflow at each gauging station. Winter streamflow is predicted using a linear regression model. A leave-one-out cross validation approach was adopted to create calibration and validations subsets. The correlation coefficient (RHO), Root Mean Square Error Skill Score (RMSESS) and the Gerrity Skill Score (GSS) were used to evaluate the forecasting skill. From the 382 stations evaluated, significant and stable correlations with SAI were found in 238 stations, covering most of the IP (except for the Cantabrian and Mediterranean slopes). Some forecasting skill was found in 223 of them, being this skill moderate (RHO>0.44, RMSESS>10%, GSS>0.2) in 141 of them, and particularly good (RHO>0.5, RMSESS>20%, GSS>0.4) in 23. This study shows that the SAI of previous October is a reliable predictor of following winter streamflow for the Iberian Peninsula Rivers

Cryopreservation of Iberian pig spermatozoa. Comparison of different freezing extenders based on post-thaw sperm quality.

PubMed

De Mercado, Eduardo; Rodríguez, Ana; Gómez, Emilio; Sanz, Elena

2010-03-01

The aim of this study was to evaluate the cryoprotective effect of different freezing extenders against cryopreservation injuries on Iberian boar sperm. The sperm-rich fraction was collected and pooled from six sexually mature Iberian boars, and was frozen in different extenders containing glucose, lactose or fructose as sugar source and including Orvus ES Paste only in the freezing extender-2 (Glucose; Lactose and Fructose) or in both freezing extenders (Glucose2; Lactose2 and Fructose2). During the cryopreservation process, the supernatant was removed after the centrifugation step, then was extended with freezing extender-1 for the equilibration period and with freezing extender-2 immediately before freezing. Post-thaw sperm characteristics, such as plasma membrane integrity (SYBR-14/PI), mitochondrial function (Rhodamine 123) and acrosome integrity (NAR), were monitored. Overall sperm motility and the individual kinematic parameters of motile spermatozoa (assessed by the computer-aided sperm analysis system Sperm Class Analyzer [SCA]) were recorded in the different experimental treatments. Measurements were taken at 30 and 150 min post-thaw. The state of the acrosome after thawing did not show significant differences between the freezing extenders studied. Freezing-thawing caused a significant decrease (P<0.001) in plasma membrane integrity and in mitochondrial activity in the spermatozoa frozen with Orvus ES Paste in both freezing extenders. Furthermore, spermatozoa frozen with Orvus ES Paste in both freezing extenders exhibited lower (P<0.05) motility and kinematic parameters than those frozen in the absence of Orvus ES Paste in the first freezing extender. The spermatozoa frozen with the Lactose extender and with Orvus ES Paste only in the second freezing extender showed a better evolution of the motility and kinematic characteristics (P<0.05) over time. The deterioration in post-thaw sperm motility and kinematic parameters were concurrent with reduced sperm

First records of Cotylea (Polycladida, Platyhelminthes) for the Atlantic coast of the Iberian Peninsula

PubMed Central

Noreña, Carolina; Marquina, Daniel; Perez, Jacinto; Almon, Bruno

2014-01-01

Abstract A study of polyclad fauna of the Atlantic coast of the Iberian Peninsula was carried out from 2010 to 2013. The paper reports nine new records belonging to three Cotylean families: the family Euryleptidae Lang, 1884, Pseudocerotidae Lang, 1884 and the family Prosthiostomidae Lang, 1884, and describes one new species, Euryleptodes galikias sp. n. PMID:24843268

Changes in the geographical distribution and abundance of the tick Ixodes ricinus during the past 30 years in Sweden

PubMed Central

2012-01-01

of ticks had increased markedly in LB- and TBE-endemic areas in South (Götaland) and Central Sweden. Conclusions The results suggest that I. ricinus has expanded its range in North Sweden and has become distinctly more abundant in Central and South Sweden during the last three decades. However, in the northern mountain region I. ricinus is still absent. The increased abundance of the tick can be explained by two main factors: First, the high availability of large numbers of important tick maintenance hosts, i.e., cervids, particularly roe deer (Capreolus capreolus) during the last three decades. Second, a warmer climate with milder winters and a prolonged growing season that permits greater survival and proliferation over a larger geographical area of both the tick itself and deer. High reproductive potential of roe deer, high tick infestation rate and the tendency of roe deer to disperse great distances may explain the range expansion of I. ricinus and particularly the appearance of new TBEV foci far away from old TBEV-endemic localities. The geographical presence of LB in Sweden corresponds to the distribution of I. ricinus. Thus, LB is now an emerging disease risk in many parts of North Sweden. Unless countermeasures are undertaken to keep the deer populations, particularly C. capreolus and Dama dama, at the relatively low levels that prevailed before the late 1970s - especially in and around urban areas where human population density is high - by e.g. reduced hunting of red fox (Vulpes vulpes) and lynx (Lynx lynx), the incidences of human LB and TBE are expected to continue to be high or even to increase in Sweden in coming decades. PMID:22233771

Solar shortwave radiation in the Iberian Peninsula along the last six decades

NASA Astrophysics Data System (ADS)

Bilbao, Julia; Román, Roberto; de Miguel, Argimiro; Pérez-Burgos, Ana

2014-05-01

The solar total shortwave radiation (SW, 305-2,800 nm) reaching the Earth surface is a key factor in the Earth energy balance and in the climate change. A decrease in SW levels has a cooling effect over the Earth. The SW changes are of interest in order to know the possible climatic effects. However long-term measured SW series are scarce, for example the oldest SW measurements in Spain are from 1973. The main objective of this work is to reconstruct and analyze nine long-term SW series from 1950 to 2011 in nine Spanish places located in the Iberian Peninsula. The data from different satellite retrievals were downloaded at the nine places: Total ozone column from different databases, spectral surface albedo and water vapour column from MODIS instrument, aerosol optical depth at 443 nm and Angström Exponent (between 443 nm and 670 nm) from MISR instrument onboard Terra satellite, and single scattering albedo from OMI instrument onboard Aura satellite. Moreover, sunshine duration records taken in the places were used. The UVSPEC/Libradtran radiative transfer model was run to obtain the daily SW irradiation under cloudless conditions in each location using as inputs monthly climatology tables calculated with the mentioned satellite retrievals. A model to obtain SW irradiation through the cloudless simulations and the sunshine records was developed, finding a great agreement with the monthly averaged SW measurements: a root mean square error of 5% and a mean bias error of 0.7%. The proposed model was used to obtain the daily SW irradiation, and the monthly, seasonal and annual averages, on the nine locations from 1950 to 2011. The homogeneity of these series was tested obtaining that all series are homogeneous. The anomalies of the series were calculated and a new series (Iberian Peninsula) of anomalies were obtained as an average of the nine locations. The annual SW on the Iberian Peninsula (the averaged series) shown a negative and statistically significant (99

The climate of the Common Era off the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Abrantes, Fátima; Rodrigues, Teresa; Rufino, Marta; Salgueiro, Emília; Oliveira, Dulce; Gomes, Sandra; Oliveira, Paulo; Costa, Ana; Mil-Homens, Mário; Drago, Teresa; Naughton, Filipa

2017-12-01

The Mediterranean region is a climate hot spot, sensitive not only to global warming but also to water availability. In this work we document major temperature and precipitation changes in the Iberian Peninsula and margin during the last 2000 years and propose an interplay of the North Atlantic internal variability with the three atmospheric circulation modes (ACMs), (North Atlantic Oscillation (NAO), east atlantic (EA) and Scandinavia (SCAND)) to explain the detected climate variability. We present reconstructions of sea surface temperature (SST derived from alkenones) and on-land precipitation (estimated from higher plant n-alkanes and pollen data) in sedimentary sequences recovered along the Iberian Margin between the south of Portugal (Algarve) and the northwest of Spain (Galiza) (36 to 42° N). A clear long-term cooling trend, from 0 CE to the beginning of the 20th century, emerges in all SST records and is considered to be a reflection of the decrease in the Northern Hemisphere summer insolation that began after the Holocene optimum. Multi-decadal/centennial SST variability follows other records from Spain, Europe and the Northern Hemisphere. Warm SSTs throughout the first 1300 years encompass the Roman period (RP), the Dark Ages (DA) and the Medieval Climate Anomaly (MCA). A cooling initiated at 1300 CE leads to 4 centuries of colder SSTs contemporary with the Little Ice Age (LIA), while a climate warming at 1800 CE marks the beginning of the modern/Industrial Era. Novel results include two distinct phases in the MCA: an early period (900-1100 years) characterized by intense precipitation/flooding and warm winters but a cooler spring-fall season attributed to the interplay of internal oceanic variability with a positive phase in the three modes of atmospheric circulation (NAO, EA and SCAND). The late MCA is marked by cooler and relatively drier winters and a warmer spring-fall season consistent with a shift to a negative mode of the SCAND. The Industrial Era

Geomorphic status of regulated rivers in the Iberian Peninsula.

PubMed

Lobera, G; Besné, P; Vericat, D; López-Tarazón, J A; Tena, A; Aristi, I; Díez, J R; Ibisate, A; Larrañaga, A; Elosegi, A; Batalla, R J

2015-03-01

River regulation by dams modifies flow regimes, interrupts the transfer of sediment through channel networks, and alters downstream bed dynamics, altogether affecting channel form and processes. So far, most studies on the geomorphic impacts of dams are restricted to single rivers, or even single river stretches. In this paper we analyse the geomorphic status of 74 river sites distributed across four large basins in the Iberian Peninsula (i.e. 47 sites located downstream of dams). For this purpose, we combine field data with hydrological data available from water agencies, and analyse historical (1970) and current aerial photographs. In particular, we have developed a Geomorphic Status (GS) index that allows us to assess the physical structure of a given channel reach and its change through time. The GS encompasses a determination of changes in sedimentary units, sediment availability, bar stability and channel flow capacity. Sites are statistically grouped in four clusters based on contrasted physical and climate characteristics. Results emphasise that regulation changes river's flow regime with a generalized reduction of the magnitude and frequency of floods (thus flow competence). This, in addition to the decrease downstream sediment supply, results in the loss of active bars as they are encroached by vegetation, to the point that only reaches with little or no regulation maintain exposed sedimentary deposits. The GS of regulated river reaches is negatively correlated with magnitude of the impoundment (regulation). Heavily impacted reaches present channel stabilization and, in contrast to the hydrological response, the distance and number of tributaries do not reverse the geomorphic impact of the dams. Stabilization limits river dynamics and may contribute to the environmental degradation of the fluvial ecosystem. Overall, results describe the degree of geomorphological alteration experienced by representative Iberian rivers mostly because of regulation

Volumetric runoff coefficients for experimental rural catchments in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Taguas, Encarnación V.; Molina, Cecilio; Nadal-Romero, Estela; Ayuso, José L.; Casalí, Javier; Cid, Patricio; Dafonte, Jorge; Duarte, Antonio C.; Farguell, Joaquim; Giménez, Rafael; Giráldez, Juan V.; Gómez, Helena; Gómez, Jose A.; González-Hidalgo, J. Carlos; Keizer, J. Jacob; Lucía, Ana; Mateos, Luciano; Rodríguez-Blanco, M. Luz; Schnabel, Sussane; Serrano-Muela, M. Pilar

2015-04-01

Analysis of runoff and peaks therein is essential for designing hydraulic infrastructures and for assessing the hydrological implications of likely scenarios of climate and/or land-use change. Different methods are available to calculate runoff coefficients. For instance, the runoff coefficient of a catchment can be described either as the ratio of total depth of runoff to total depth of rainfall or as the ratio of peak flow to rainfall intensity for the time of concentration (Dhakal et al. 2012). If the first definition is considered, runoff coefficients represent the global effect of different features and states of catchments and its determination requires a suitable analysis according to the objectives pursued (Chow et al., 1988). In this work, rainfall-runoff data and physical attributes from small rural catchments located in the Iberian Peninsula (Portugal and Spain) were examined in order to compare the representative values of runoff coefficients using three different approaches: i) statistical analysis of rainfall-runoff data and their quantiles (Dhakal et al., 2012); ii) probabilistic runoff coefficients from the rank-ordered pairs of observed rainfall-runoff data and their relationships with rainfall depths (Schaake et al., 1967); iii) finally, a multiple linear model based on geomorphological attributes. These catchments exhibit great variety with respect to their natural settings, such as climate, topography and lithology. We present a preliminary analysis of the rainfall-runoff relationships as well as their variability in a complex context such as the Iberian Peninsula where contrasted environmental systems coexist. We also discuss reference parameters representing runoff coefficients commonly included into hydrological models. This study is conceived as the first step to explore further working protocols and modeling gaps in a very susceptible area to the climate change such as the Iberian Peninsula's, where the analysis of runoff coefficients is

Large bowel fermentation of maize or sorghum-acorn diets fed as a different source of carbohydrates to Landrace and Iberian pigs.

PubMed

Morales, J; Pérez, J F; Martín-Orúe, S M; Fondevila, M; Gasa, J

2002-11-01

Twenty-four finishing pigs (twelve Iberian and twelve Landrace) were used in a growing and slaughtering experiment. Animals were fed two diets differing in their ingredients, maize (diet C) or sorghum-acorn (diet A). At an average weight of 107.0 kg pigs were slaughtered and hindgut digesta sampled to study the effect of breed and diet on large bowel fermentation. Flows of digesta to the hindgut compartment were estimated based on an indigestible flow marker (Cr2O3) and were higher in Iberian than in Landrace pigs (P<0.001), and higher in animals fed diet A than diet C (P=0.07). The higher flows in Iberian pigs were mainly associated with a higher voluntary feed intake (3.50 v. 2.70 kg/d, P<0.01) and lower ileal digestibility of NSP (-12.8 v. 47.8, P<0.01). Differences between diets were mainly associated with a lower ileal digestibility of starch from diet A (89.2 v. 96.9 %, P=0.06), although no differences in the resistant starch content were observed in vitro. Fermentation of different carbohydrates through the large bowel showed that NSP-glucose had lower digestibility in Iberian than in Landrace pigs (62.5 v. 94.2 %, P<0.001), but no differences were observed in starch, or other NSP-fibre fractions (arabinose, xylose and galactose). The type and amount of carbohydrates reaching the large bowel were related to the diet but also to breed, and promoted differences in the fermentative activity associated with different volatile fatty acid patterns and changes in microbial enzymic activity.

Subsurface geomicrobiology of the Iberian Pyritic Belt, a terrestrial analogue of Mars

NASA Astrophysics Data System (ADS)

Amils, Ricardo

Terrestrial subsurface geomicrobiology is a matter of growing interest on many levels. From a fundamental point of view, it seeks to determine whether life can be sustained in the absence of radiation. From an astrobiological point of view, it is an interesting model for early life on Earth, as well as a representation of life as it could occur in other planetary bodies, e.g., Mars. Ŕ Tinto is an unusual extreme acidic environment due to its size, constant acidic pH, high ıo concentration of heavy metals and high level of microbial diversity. Ŕ Tinto rises in the core of ıo the Iberian Pyritic Belt (IPB), one of the biggest sulfidic ore deposits in the world. Today it is clear that the extreme characteristics of Ŕ Tinto are not due to acid mine drainage resulting ıo from mining activity. To explore the hypothesis that a continuous underground reactor of chemolithotrophic microorganisms thriving in the rich sulfidic minerals of the IPB is responsible for the extreme conditions found in the river, a drilling project has been developed to detect evidence of subsurface microbial activity and potential resources to support these microbial communities in situ from retrieved cores (MARTE project). Preliminary results clearly show that there is an active subsurface geomicrobiology in the Iberian Pyritic Belt associated to places were ground waters intersects the sulfidic ore body.

Drought-induced weakening of growth-temperature associations in high-elevation Iberian pines

NASA Astrophysics Data System (ADS)

Diego Galván, J.; Büntgen, Ulf; Ginzler, Christian; Grudd, Håkan; Gutiérrez, Emilia; Labuhn, Inga; Julio Camarero, J.

2015-01-01

The growth/climate relationship of theoretically temperature-controlled high-elevation forests has been demonstrated to weaken over recent decades. This is likely due to new tree growth limiting factors, such as an increasing drought risk for ecosystem functioning and productivity across the Mediterranean Basin. In addition, declining tree growth sensitivity to spring temperature may emerge in response to increasing drought stress. Here, we evaluate these ideas by assessing the growth/climate sensitivity of 1500 tree-ring width (TRW) and 102 maximum density (MXD) measurement series from 711 and 74 Pinus uncinata trees, respectively, sampled at 28 high-elevation forest sites across the Pyrenees and two relict populations of the Iberian System. Different dendroclimatological standardization and split period approaches were used to assess the high- to low-frequency behavior of 20th century tree growth in response to temperature means, precipitation totals and drought indices. Long-term variations in TRW track summer temperatures until about 1970 but diverge afterwards, whereas MXD captures the recent temperature increase in the low-frequency domain fairly well. On the other hand summer drought has increasingly driven TRW along the 20th century. Our results suggest fading temperature sensitivity of Iberian high-elevation P. uncinata forest growth, and reveal the importance of summer drought that is becoming the emergent limiting factor of tree ring width formation in many parts of the Mediterranean Basin.

A study of surface ozone variability over the Iberian Peninsula during the last fifty years

NASA Astrophysics Data System (ADS)

Fernández-Fernández, M. I.; Gallego, M. C.; García, J. A.; Acero, F. J.

2011-02-01

There is good evidence for an increase in the global surface level of ozone in the past century. In this work we present an analysis of 18 surface ozone series over the Iberian Peninsula, considering the target values of ozone for the protection of human health and for the protection of vegetation, as well as the information and alert thresholds established by the current European Directive on ambient air quality and cleaner air for Europe (Directive 2008/50/EC). The results show that the stations located on the Cantabrian coast exceeded neither the target value for the protection of human health nor the target value for the protection of vegetation. The information threshold was exceeded in most of the stations, while the alert threshold was only exceeded in one. The seasonal and daily evolution of ozone concentrations were as expected. A trend analysis of three surface ozone concentration indices (monthly median and 98th percentile, and monthly maximum of the daily maximum 8-h mean) was performed both for the whole period of each station and for the common period from 2001 to 2007 for all the months of the year. It was noted that generally the south of the Iberian Peninsula presented increasing trends for the three indices, especially in the last six months of the year, and the north decreasing trends. Finally, a correlation analysis was performed between the daily maximum 8-h mean and both daily mean temperature and daily mean solar radiation for the whole and the common periods. For all stations, there was a significant positive association at a 5% significance level between the daily maximum 8-h mean and the two meteorological variables of up to approximately 0.5. The spatial distribution of these association values from 2001 to 2007 showed a positive northwest to southeast gradient over the Iberian Peninsula.

Phylogeographic distribution of very virulent infectious bursal disease virus isolates in the Iberian Peninsula.

PubMed

Cortey, Martí; Bertran, Kateri; Toskano, Jennifer; Majó, Natàlia; Dolz, Roser

2012-01-01

Viral population dynamics of very virulent infectious bursal disease virus (vvIBDV) field strains isolated in the Iberian Peninsula since the first outbreak in the 1990s have been analysed. Low levels of genetic variability and a global purification selection pattern were reported in 480 base pairs of the hypervariable region of the VP2 gene, indicating a lack of a selection-driven immune escape in the evolutive pathway of the virus. The viral population structure of vvIBDV strains in the Iberian Peninsula showed a strong relationship between geography and phylogeny, with two main groups observed. A global comparison among vvIBDV strains also showed an association with sequences from the same country. The low variability, the strong purifying selection and the geographical pattern observed point to a picture where the virus evolves slowly, occupying the same geographical niche for a long time. The scenario depicted fits well with the biological features of the virus: being able to remain viable for long periods of time due to a strong environmental resistance, and as an immunosuppressive agent, capable per se of annihilating temporally the immune system of the host.

A shift in the spatial pattern of Iberian droughts during the 17th century

NASA Astrophysics Data System (ADS)

Domínguez-Castro, F.; García-Herrera, R.; Ribera, P.; Barriendos, M.

2010-06-01

In this paper, series of drought occurrence and drought extension in the Iberian Peninsula are constructed for the 1600-1750 period from seven rogation series. These rogation ceremony records come from Bilbao, Catalonia, Zamora, Zaragoza, Toledo, Murcia and Seville. They are distributed across the Peninsula and include the areas with the most characteristic Iberian climate types, influenced by the Atlantic and the Mediterranean conditions, described from modern data. A seasonal division of the series shows that spring is a critical season for rogation series in most of Iberia, being Bilbao the only site were the highest number of rogations is detected for a different season. The annual analysis of the series shows a dramatic difference between the period 1600-1652, when droughts are characterized by its local character; and the period 1653-1749, when they affect to broader regions or even to the whole Peninsula. The analysis of spring series confirms the existence of the two periods detected in the annual analysis. Finally, secondary documentary sources are used to further characterise the two most extended droughts in the period, 1664 and 1680, and to verify the extension of the areas affected by droughts recorded through rogation series.

Genetic evidence for multiple events of hybridization between wolves and domestic dogs in the Iberian Peninsula.

PubMed

Godinho, Raquel; Llaneza, Luis; Blanco, Juan C; Lopes, Susana; Álvares, Francisco; García, Emilio J; Palacios, Vicente; Cortés, Yolanda; Talegón, Javier; Ferrand, Nuno

2011-12-01

Hybridization between wild species and their domestic counterparts may represent a major threat to natural populations. However, high genetic similarity between the hybridizing taxa makes the detection of hybrids a difficult task and may hinder attempts to assess the impact of hybridization in conservation biology. In this work, we used a combination of 42 autosomal microsatellites together with Y-chromosome microsatellite-defined haplotypes and mtDNA sequences to investigate the occurrence and dynamics of wolf-dog hybridization in the Iberian Peninsula. To do this, we applied a variety of Bayesian analyses and a parallel set of simulation studies to evaluate (i) the differences between Iberian wolves and dogs, (ii) the frequency and geographical distribution of hybridization and (iii) the directionality of hybridization. First, we show that Iberian wolves and dogs form two well-differentiated genetic entities, suggesting that introgressive hybridization is not a widespread phenomenon shaping both gene pools. Second, we found evidence for the existence of hybridization that is apparently restricted to more peripheral and recently expanded wolf populations. Third, we describe compelling evidence suggesting that the dynamics of hybridization in wolf populations is mediated by crosses between male dogs and female wolves. More importantly, the observation of a population showing the occurrence of a continuum of hybrid classes forming mixed packs may indicate that we have underestimated hybridization. If future studies confirm this pattern, then an intriguing avenue of research is to investigate how introgression from free-ranging domestic dogs is enabling wolf populations to adapt to the highly humanized habitats of southern Europe while still maintaining their genetic differentiation. © 2011 Blackwell Publishing Ltd.

Mid-late Holocene climatic changes in the Southwestern Iberian shelf

NASA Astrophysics Data System (ADS)

Gomes, S.; Naughton, F.; Rodrigues, T.; Drago, T.; Sanchez-Goñi, M.; Freitas, C.

2012-04-01

Vegetation (pollen analysis) and alkenone-derived Sea Surface Temperature (SST) reconstructions from a south western Iberian shelf core (POPEI VC2B) (36°53'12,99'' N, 8°03'57,98'' W) show orbital and suborbital climate variability at extremely high resolution for the last 6000 years in this region. In particular, the mid-late Holocene is marked by a long-term cooling revealed by the gradual decrease of arboreal pollen (AP) percentages and SST which parallels the general decreasing trend of the δ18-O isotope composition recorded in Greenland ice records and the decrease of the mid-latitudes summer insolation. The short-term vegetation changes, reflecting millennial scale climatic variability, are clearly identified in the POPEI VC2B over the last 6000 years. In particular, the basement of this record is marked by the presence of semi-desert plants (Chenopodiaceae, Artemisia and Ephedra) reflecting dry conditions. These particular dry conditions have been detected elsewhere in the southern Iberian Peninsula and in North African records. Following the particularly dry period, there is a decline of semi-desert plants and an increase of Ericaceae and Pinus associated with establishment of an incipient forest of Quercus deciduous type reflecting temperate and humid conditions. This period was followed by a decrease of arboreal pollen percentages, suggesting a relative climate cooling. Finally, the last 2500/2000 years, are marked by the presence of anthropogenic associations (including Cerealia-type, Plantago lanceolata-coronopus type, and Olea) and are characterized by several vegetation and climate oscillations associated with the Roman Period (RP), the Dark Ages (DA), the Medieval Climatic Anomaly (MCA), and the Little Ice Age (LIA).

Widespread Secondary Contact and New Glacial Refugia in the Halophilic Rotifer Brachionus plicatilis in the Iberian Peninsula

PubMed Central

Campillo, Sergi; Serra, Manuel; Carmona, María José; Gómez, Africa

2011-01-01

Small aquatic organisms harbour deep phylogeographic patterns and highly structured populations even at local scales. These patterns indicate restricted gene flow, despite these organisms' high dispersal abilities, and have been explained by a combination of (1) strong founder effects due to rapidly growing populations and very large population sizes, and (2) the development of diapausing egg banks and local adaptation, resulting in low effective gene flow, what is known as the Monopolization hypothesis. In this study, we build up on our understanding of the mitochondrial phylogeography of the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula by both increasing the number of sampled ponds in areas where secondary contact is likely and doubling sample sizes. We analyzed partial mitochondrial sequences of 252 individuals. We found two deep mitochondrial DNA lineages differing in both their genetic diversity and the complexity of their phylogeographic structure. Our analyses suggest that several events of secondary contact between clades occurred after their expansion from glacial refugia. We found a pattern of isolation-by-distance, which we interpret as being the result of historical colonization events. We propose the existence of at least one glacial refugium in the SE of the Iberian Peninsula. Our findings challenge predictions of the Monopolization hypothesis, since coexistence (i.e., secondary contact) of divergent lineages in some ponds in the Iberian Peninsula is common. Our results indicate that phylogeographic structures in small organisms can be very complex and that gene flow between diverse lineages after population establishment can indeed occur. PMID:21698199

Widespread secondary contact and new glacial refugia in the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula.

PubMed

Campillo, Sergi; Serra, Manuel; Carmona, María José; Gómez, Africa

2011-01-01

Small aquatic organisms harbour deep phylogeographic patterns and highly structured populations even at local scales. These patterns indicate restricted gene flow, despite these organisms' high dispersal abilities, and have been explained by a combination of (1) strong founder effects due to rapidly growing populations and very large population sizes, and (2) the development of diapausing egg banks and local adaptation, resulting in low effective gene flow, what is known as the Monopolization hypothesis. In this study, we build up on our understanding of the mitochondrial phylogeography of the halophilic rotifer Brachionus plicatilis in the Iberian Peninsula by both increasing the number of sampled ponds in areas where secondary contact is likely and doubling sample sizes. We analyzed partial mitochondrial sequences of 252 individuals. We found two deep mitochondrial DNA lineages differing in both their genetic diversity and the complexity of their phylogeographic structure. Our analyses suggest that several events of secondary contact between clades occurred after their expansion from glacial refugia. We found a pattern of isolation-by-distance, which we interpret as being the result of historical colonization events. We propose the existence of at least one glacial refugium in the SE of the Iberian Peninsula. Our findings challenge predictions of the Monopolization hypothesis, since coexistence (i.e., secondary contact) of divergent lineages in some ponds in the Iberian Peninsula is common. Our results indicate that phylogeographic structures in small organisms can be very complex and that gene flow between diverse lineages after population establishment can indeed occur.

The Punta Lucero Quarry site (Zierbena, Bizkaia): a window into the Middle Pleistocene in the Northern Iberian Peninsula

NASA Astrophysics Data System (ADS)

Gómez-Olivencia, Asier; Sala, Nohemi; Arceredillo, Diego; García, Nuria; Martínez-Pillado, Virginia; Rios-Garaizar, Joseba; Garate, Diego; Solar, Gonzalo; Libano, Iñaki

2015-08-01

The period between the end of the Early Pleistocene and the mid-Middle Pleistocene (roughly between 1.0 and 0.4 Ma BP) is of great interest in Western Europe. It witnessed several climatic oscillations and changes in the fauna, the demise of a hominin species and the appearance of another, along with important cultural and technological changes. Thus, the few available sites with these chronologies is vital to the understanding of the tempo and mode of these changes. Middle Pleistocene sites in the Northern Iberian Peninsula are very rare. Here we present the study of the site found at the Punta Lucero Quarry (Biscay province, Northern Iberian Peninsula), which includes for the first time the complete collection from the site. The fossil association from this site includes several ungulates, such as a Megacerine deer, Cervus elaphus, large bovids (likely both Bos primigenius and Bison sp. are present), Stephanorhinus sp., and carnivores, such as Homotherium latidens, Panthera gombaszoegensis, Canis mosbachensis and Vulpes sp. This association is typical of a middle Middle Pleistocene chronology and would be the oldest macro-mammal site in the Eastern Cantabrian region. This site would likely correspond to a chronology after Mode 1 technological complex and before the arrival of Mode 2 technology in this region. Thus, it offers a glimpse into the paleoecological conditions slightly prior to or contemporaneous with the first Acheulian makers in the northern fringe of the Iberian Peninsula.

Effect of different carotenoid-containing diets on the vitamin A levels and colour parameters in Iberian pigs' tissues: utility as biomarkers of traceability.

PubMed

Álvarez, R; Vicario, I M; Meléndez-Martínez, A J; Alcalde, M J

2014-10-01

Retinol and fat colour parameters in Iberian pigs fed on different carotenoid-containing diets were assessed. Thirty animals in two groups were considered: Iberian breed pigs fed on acorns and grass (Montanera) and on concentrate (Cebo). Carotenoids and retinoids were analysed in the diets and in plasma, liver and perirenal fat of the animals by HPLC and HPLC-MS. Retinol levels in plasma and fat were similar in Montanera and Cebo animals. The utility of retonids and colour parameters as traceability index was also explored. Retinoids in liver classified correctly 93% of the animals according to their diet L* and hab. CIELAB parameters of the perirenal fat discriminated correctly 78.6% of the animals according to their diet. L* values for the Montanera animals were significantly different (P<0.01) from those fed on concentrate. It can be claimed that the liver retinol profile and fat colour parameters can be useful for feeding traceability purposes in Iberian pigs breed in Montanera and Cebo. Copyright © 2014 Elsevier Ltd. All rights reserved.

400 Years of summer hydroclimate from stable isotopes in Iberian trees

NASA Astrophysics Data System (ADS)

Andreu-Hayles, Laia; Ummenhofer, Caroline C.; Barriendos, Mariano; Schleser, Gerhard H.; Helle, Gerhard; Leuenberger, Markus; Gutiérrez, Emilia; Cook, Edward R.

2017-07-01

Tree rings are natural archives that annually record distinct types of past climate variability depending on the parameters measured. Here, we use ring-width and stable isotopes in cellulose of trees from the northwestern Iberian Peninsula (IP) to understand regional summer hydroclimate over the last 400 years and the associated atmospheric patterns. Correlations between tree rings and climate data demonstrate that isotope signatures in the targeted Iberian pine forests are very sensitive to water availability during the summer period, and are mainly controlled by stomatal conductance. Non-linear methods based on extreme events analysis allow for capturing distinct seasonal climatic variability recorded by tree-ring parameters and asymmetric signals of the associated atmospheric features. Moreover, years with extreme high (low) values in the tree-ring records were characterised by coherent large-scale atmospheric circulation patterns with reduced (enhanced) moisture transport onto the northwestern IP. These analyses of extremes revealed that high/low proxy values do not necessarily correspond to mirror images in the atmospheric anomaly patterns, suggesting different drivers of these patterns and the corresponding signature recorded in the proxies. Regional hydroclimate features across the broader IP and western Europe during extreme wet/dry summers detected by the northwestern IP trees compare favourably to independent multicentury sea level pressure and drought reconstructions for Europe. Historical records also validate our findings that attribute non-linear moisture signals recorded by extreme tree-ring values to distinct large-scale atmospheric patterns and allow for 400-year reconstructions of the frequency of occurrence of extreme conditions in late spring and summer hydroclimate.

Conservation genetics of the endangered Iberian steppe plant Ferula loscosii (Apiaceae).

PubMed

Pérez-Collazos, E; Catalán, P

2008-07-01

Ferula loscosii (Lange) Willk (Apiaceae) is a threatened endemic species native to the Iberian Peninsula. The plant has a narrow and disjunct distribution in three regions, NE, C and SE Spain. Genetic variability within and among 11 populations from its natural distribution was assessed using allozymes. Intermediate levels of genetic diversity were detected in F. loscosii (P(99%) = 36.83; H(E) = 0.125; H(T) = 0.152). However, the highest genetic diversity (58%) corresponded to the threatened populations from SE and C Spain (H(T) = 0.169) rather than the more abundant and larger populations from NE Spain (Ebro valley) (H(T) = 0.122). Low to moderate levels of genetic structure were found among regional ranges (G(ST) = 0.134), and several statistical spatial correlation analyses corroborated substantial genetic differentiation among the three main regional ranges. However, no significant genetic differentiation was found among the NE Spain populations, except for a northernmost population that is geographically isolated. Outcrossing mating and other biological traits of the species could account for the maintenance of the present values of genetic diversity within populations. The existence of an ancestral late Tertiary wider distribution of the species in SE and C Spain, followed by the maintenance of different Quaternary refugia in these warmer areas, together with a more recent and rapid post-glacial expansion towards NE Spain, are arguments that could explain the low genetic variability and structure found in the Ebro valley and the higher levels of diversity in the southern Iberian populations.

Abundance and fragmentation patterns of the ecosystem engineer Lithophyllum byssoides (Lamarck) Foslie along the Iberian Peninsula Atlantic coast. Conservation and management implications

NASA Astrophysics Data System (ADS)

Veiga, Puri; Rubal, Marcos; Cacabelos, Eva; Moreira, Juan; Sousa-Pinto, Isabel

2013-10-01

The crustose calcareous red macroalgae Lithophyllum byssoides (Lamarck) Foslie is a common ecosystem engineer along the Atlantic and Mediterranean coast of the Iberian Peninsula. This species is threatened by several anthropogenic impacts acting at different spatial scales, such as pollution or global warming. The aim of this study is to identify scales of spatial variation in the abundance and fragmentation patterns of L. byssoides along the Atlantic coast of the Iberian Peninsula. For this aim we used a hierarchical sampling design considering four spatial scales (from metres to 100s of kilometres). Results of the present study indicated no significant variability among regions investigated whereas significant variability was found at the scales of shore and site in spatial patterns of abundance and fragmentation of L. byssoides. Variance components were higher at the spatial scale of shore for abundance and fragmentation of L. byssoides with the only exception of percentage cover and thus, processes acting at the scale of 10s of kilometres seem to be more relevant in shaping the spatial variability both in abundance and fragmentation of L. byssoides. These results provided quantitative estimates of abundance and fragmentation of L. byssoides at the Atlantic coast of the Iberian Peninsula establishing the observational basis for future assessment, monitoring and experimental investigations to identify the processes and anthropogenic impacts affecting L. byssoides populations. Finally we have also identified percentage cover and patch density as the best variables for long-term monitoring programs aimed to detect future anthropogenic impacts on L. byssoides. Therefore, our results have important implications for conservation and management of this valuable ecosystem engineer along the Atlantic coast of the Iberian Peninsula.

CHALLENGES OF PASSIVE TREATMENT OF METAL MINE DRAINAGE IN THE IBERIAN PYRITE BELT (SOUTHERN SPAIN): PRELIMINARY STUDIES

EPA Science Inventory

AMD in the Iberian Pyrite Belt is a problem of global scale. Successful implementation of passive treatment systems could remediate at least part of this problem at reasonable costs. However, initial trials with ALD and RAPS based on gravel size limestone failed due to rapid loss...

Climate variability during the Holocene inferred from northeastern Iberian speleothems

NASA Astrophysics Data System (ADS)

Moreno, A.; Bartolomé, M.; Sancho, C.; Belmonte, Á.; Stoll, H.; Cacho, I.; Edwards, R. L.; Hellstrom, J.

2012-04-01

Although the general climate trends during the Holocene in the Iberian Peninsula have been well described after the study of marine and lacustrine records, many questions regarding the timing of some of the events together with the characterization of the higher-frequency climate variability are still poorly understood. New speleothem records from several caves in northeastern Iberia provide data to explore Holocene climate changes. The selected caves are located in a latitudinal transect from the Pyrenees to the Iberian Range and placed at different altitude. Two of them, 5 de Agosto and Pot au Feu, belong to the same karstic complex in Cotiella massif (Central Pyrenees, 1600 m asl). Seso Cave, also in the Central Pyrenees but at 781 m of altitude, and Molinos cave, a cavity very rich in speleothems located at 1040 m in the Iberian Range, complete the transect. Although in all the caves precipitation coming from Atlantic fronts dominates over the year, a significant Mediterranean influence, specially in summer months, is identified after rainfall monitoring. Speleothem formation during the Holocene occurred at a very low pace in 5 de Agosto cave (80yrs/mm) and increased dramatically at low-altitude caves and during particular periods proved to be wetter (eg. Early Holocene in Molinos cave, less than 10yr/mm). In Seso and Pot au Feu caves, up to seven studied speleothems only grew during short climatic events such as the Iron Cold Period (3000-2500 cal yr BP) or the Little Ice Age (1300-1850 yr AD) that, although cold, were particularly humid periods in northeastern Spain. First stable isotope results highlight the importance of comparing speleothems with similar growing rates and from the same cave to extract climate information and discard other influences. From the integration of four stalagmites from Molinos cave covering since the Holocene onset to 2000 cal yrs BP, the Early Holocene (11.7-8.5 ka BP) with d13C values between -11 and - 9‰ appears as the

Iberian fish records in the vertebrate collection of the Museum of Zoology of the University of Navarra

PubMed Central

Rodeles, Amaia A.; Galicia, David; Miranda, Rafael

2016-01-01

The study of freshwater fish species biodiversity and community composition is essential for understanding river systems, the effects of human activities on rivers, and the changes these animals face. Conducting this type of research requires quantitative information on fish abundance, ideally with long-term series and fish body measurements. This Data Descriptor presents a collection of 12 datasets containing a total of 146,342 occurrence records of 41 freshwater fish species sampled in 233 localities of various Iberian river basins. The datasets also contain 148,749 measurement records (length and weight) for these fish. Data were collected in different sampling campaigns (from 1992 to 2015). Eleven datasets represent large projects conducted over several years, and another combines small sampling campaigns. The Iberian Peninsula contains high fish biodiversity, with numerous endemic species threatened by various menaces, such as water extraction and invasive species. These data may support the development of large biodiversity conservation studies. PMID:27727236

Iberian fish records in the vertebrate collection of the Museum of Zoology of the University of Navarra.

PubMed

Rodeles, Amaia A; Galicia, David; Miranda, Rafael

2016-10-11

The study of freshwater fish species biodiversity and community composition is essential for understanding river systems, the effects of human activities on rivers, and the changes these animals face. Conducting this type of research requires quantitative information on fish abundance, ideally with long-term series and fish body measurements. This Data Descriptor presents a collection of 12 datasets containing a total of 146,342 occurrence records of 41 freshwater fish species sampled in 233 localities of various Iberian river basins. The datasets also contain 148,749 measurement records (length and weight) for these fish. Data were collected in different sampling campaigns (from 1992 to 2015). Eleven datasets represent large projects conducted over several years, and another combines small sampling campaigns. The Iberian Peninsula contains high fish biodiversity, with numerous endemic species threatened by various menaces, such as water extraction and invasive species. These data may support the development of large biodiversity conservation studies.

Development of a DC propulsion system for an electric vehicle

NASA Technical Reports Server (NTRS)

Kelledes, W. L.

1984-01-01

The suitability of the Eaton automatically shifted mechanical transaxle concept for use in a near-term dc powered electric vehicle is evaluated. A prototype dc propulsion system for a passenger electric vehicle was designed, fabricated, tested, installed in a modified Mercury Lynx vehicle and track tested at the contractor's site. The system consisted of a two-axis, three-speed, automatically-shifted mechanical transaxle, 15.2 Kw rated, separately excited traction motor, and a transistorized motor controller with a single chopper providing limited armature current below motor base speed and full range field control above base speed at up to twice rated motor current. The controller utilized a microprocessor to perform motor and vehicle speed monitoring and shift sequencing by means of solenoids applying hydraulic pressure to the transaxle clutches. Bench dynamometer and track testing was performed. Track testing showed best system efficiency for steady-state cruising speeds of 65-80 Km/Hz (40-50 mph). Test results include acceleration, steady speed and SAE J227A/D cycle energy consumption, braking tests and coast down to characterize the vehicle road load.

On the selection of ordinary differential equation models with application to predator-prey dynamical models.

PubMed

Zhang, Xinyu; Cao, Jiguo; Carroll, Raymond J

2015-03-01

We consider model selection and estimation in a context where there are competing ordinary differential equation (ODE) models, and all the models are special cases of a "full" model. We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso. We show the resulting method, here called the LSA method, to be an (asymptotically) oracle model selection method. The finite sample performance of the proposed LSA method is investigated with Monte Carlo simulations, in which we examine the percentage of selecting true ODE models, the efficiency of the parameter estimation compared to simply using the full and true models, and coverage probabilities of the estimated confidence intervals for ODE parameters, all of which have satisfactory performances. Our method is also demonstrated by selecting the best predator-prey ODE to model a lynx and hare population dynamical system among some well-known and biologically interpretable ODE models. © 2014, The International Biometric Society.

Cosmic veto gamma-spectrometry for Comprehensive Nuclear-Test-Ban Treaty samples

NASA Astrophysics Data System (ADS)

Burnett, J. L.; Davies, A. V.

2014-05-01

The Comprehensive Nuclear-Test-Ban Treaty (CTBT) is supported by a global network of monitoring stations that perform high-resolution gamma-spectrometry on air filter samples for the identification of 85 radionuclides. At the UK CTBT Radionuclide Laboratory (GBL15), a novel cosmic veto gamma-spectrometer has been developed to improve the sensitivity of station measurements, providing a mean background reduction of 80.8% with mean MDA improvements of 45.6%. The CTBT laboratory requirement for a 140Ba MDA is achievable after 1.5 days counting compared to 5-7 days using conventional systems. The system consists of plastic scintillation plates that detect coincident cosmic-ray interactions within an HPGe gamma-spectrometer using the Canberra LynxTM multi-channel analyser. The detector is remotely configurable using a TCP/IP interface and requires no dedicated coincidence electronics. It would be especially useful in preventing false-positives at remote station locations (e.g. Halley, Antarctica) where sample transfer to certified laboratories is logistically difficult. The improved sensitivity has been demonstrated for a CTBT air filter sample collected after the Fukushima incident.

Serologic survey for Toxoplasma gondii in wild animals in Florida.

PubMed

Burridge, M J; Bigler, W J; Forrester, D J; Hennemann, J M

1979-11-01

Blood samples were collected for serum separation from 114 species of wild animals (25 species of mammals, 82 species of birds, and 7 species of reptiles) in Florida. Each of the 3,471 samples was tested for antibodies to Toxoplasma gondii, using the indirect hemagglutination test. The highest prevalences of T gondii antibodies were 19% in armadillos (Dasypus novemcinctus), 18% in raccoons (Procyon lotor), 13% in black rats (Rattus rattus), and 11% in opossums (Didelphis marsupialis). Antibody prevalences were significantly higher in male than in female raccoons (P less than 0.05) and in adult than in nonadult raccoons and opossums (P less than 0.005). A high proportion of seropositive animals was found in three other mammalian species: 4 of 4 black bears (Ursus americanus), 2 of 3 bobcats (Lynx rufus), and 2 of 8 Norway rats (Rattus norvegicus) tested. Antibodies were found in 8 of the 1,279 avian serums; they were not found in any of the 13 reptilian serums tested. There were no significant geographic variations in antibody prevalence in any species.

The lager yeast Saccharomyces pastorianus removes and transforms Fusarium trichothecene mycotoxins during fermentation of brewer's wort.

PubMed

Nathanail, Alexis V; Gibson, Brian; Han, Li; Peltonen, Kimmo; Ollilainen, Velimatti; Jestoi, Marika; Laitila, Arja

2016-07-15

An investigation was conducted to determine the fate of deoxynivalenol, deoxynivalenol-3-glucoside, HT-2 toxin and T-2 toxin, during a four-day fermentation with the lager yeast Saccharomyces pastorianus. The influence of excessive mycotoxin concentrations on yeast growth, productivity and viability were also assessed. Mycotoxins were dosed at varying concentrations to 11.5° Plato wort. Analysis of yeast revealed that presence of the toxins even at concentrations up to 10,000 μg/L had little or no effect on sugar utilisation, alcohol production, pH, yeast growth or cell viability. Of the dosed toxin amounts 9-34% were removed by the end of fermentation, due to physical binding and/or biotransformation by yeast. Deoxynivalenol-3-glucoside was not reverted to its toxic precursor during fermentation. Processing of full-scan liquid chromatography-quadrupole time-of-flight-mass spectrometry (LC-QTOF-MS) data with MetaboLynx and subsequent LC-QTOF-MS/MS measurements resulted in annotation of several putative metabolites. De(acetylation), glucosylation and sulfonation were the main metabolic pathways activated. Copyright © 2016 Elsevier Ltd. All rights reserved.

Upgrading NASA/DOSE laser ranging system control computers

NASA Technical Reports Server (NTRS)

Ricklefs, Randall L.; Cheek, Jack; Seery, Paul J.; Emenheiser, Kenneth S.; Hanrahan, William P., III; Mcgarry, Jan F.

1993-01-01

Laser ranging systems now managed by the NASA Dynamics of the Solid Earth (DOSE) and operated by the Bendix Field Engineering Corporation, the University of Hawaii, and the University of Texas have produced a wealth on interdisciplinary scientific data over the last three decades. Despite upgrades to the most of the ranging station subsystems, the control computers remain a mix of 1970's vintage minicomputers. These encompass a wide range of vendors, operating systems, and languages, making hardware and software support increasingly difficult. Current technology allows replacement of controller computers at a relatively low cost while maintaining excellent processing power and a friendly operating environment. The new controller systems are now being designed using IBM-PC-compatible 80486-based microcomputers, a real-time Unix operating system (LynxOS), and X-windows/Motif IB, and serial interfaces have been chosen. This design supports minimizing short and long term costs by relying on proven standards for both hardware and software components. Currently, the project is in the design and prototyping stage with the first systems targeted for production in mid-1993.

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore

USGS Publications Warehouse

Fountain-Jones, Nicholas M.; Craft, Meggan E.; Funk, W. Chris; Kozakiewicz, Chris; Trumbo, Daryl; Boydston, Erin E.; Lyren, Lisa M.; Crooks, Kevin R.; Lee, Justin S.; VandeWoude, Sue; Carver, Scott

2017-01-01

Urban expansion has widespread impacts on wildlife species globally, including the transmission and emergence of infectious diseases. However, there is almost no information about how urban landscapes shape transmission dynamics in wildlife. Using an innovative phylodynamic approach combining host and pathogen molecular data with landscape characteristics and host traits, we untangle the complex factors that drive transmission networks of Feline Immunodeficiency Virus (FIV) in bobcats (Lynx rufus). We found that the urban landscape played a significant role in shaping FIV transmission. Even though bobcats were often trapped within the urban matrix, FIV transmission events were more likely to occur in areas with more natural habitat elements. Urban fragmentation also resulted in lower rates of pathogen evolution, possibly owing to a narrower range of host genotypes in the fragmented area. Combined, our findings show that urban landscapes can have impacts on a pathogen and its evolution in a carnivore living in one of the most fragmented and urban systems in North America. The analytical approach used here can be broadly applied to other host-pathogen systems, including humans.

Zilsel's Thesis, Maritime Culture, and Iberian Science in Early Modern Europe.

PubMed

Leitão, Henrique; Sánchez, Antonio

2017-01-01

Zilsel's thesis on the artisanal origins of modern science remains one of the most original proposals about the emergence of scientific modernity. We propose to inspect the scientific developments in Iberia in the early modern period using Zilsel's ideas as a guideline. Our purpose is to show that his ideas illuminate the situation in Iberia but also that the Iberian case is a remarkable illustration of Zilsel's thesis. Furthermore, we argue that Zilsel's thesis is essentially a sociological explanation that cannot be applied to isolated cases; its use implies global events that involve extended societies over large periods of time.

Plant-based remedies for wolf bites and rituals against wolves in the Iberian Peninsula: Therapeutic opportunities and cultural values for the conservation of biocultural diversity.

PubMed

González, José A; Carvalho, Ana Maria; Vallejo, José Ramón; Amich, Francisco

2017-09-14

Combined approaches to local knowledge and folk plant use improve awareness and promote effective strategies for the conservation of significant biocultural patrimony. Moreover, the information reported might be the basis for further appropriate phytochemical and pharmacological research. Therefore we provide an insight into traditional herbal remedies and practices for healing bite injuries in humans and domestic animals caused by the Iberian wolf. Wolf bites are associated with inflammatory processes and rabies is a potential complication AIMS: This paper describes and summarises the medicinal-veterinary empirical and ritual uses of the Iberian flora for wolf injuries and reviews the ethnopharmacological data of specific plants that are already published. The Iberian wolf is a critically endangered subspecies of the grey wolf. Livestock attacks attributed to wolves are increasingly frequent in the Iberian Peninsula, resulting in serious social problems. Interesting strategies for Iberian wolf conservation might be related to traditional grazing practices that are deeply linked with empirical knowledge and local practices passed on by oral tradition, which are also vulnerable now. Based on documentary sources from the beginning of the twentieth century to the present, we systematically searched old monographs, regional documents, technical papers, project reports, as well as the international and national databases and the available scientific literature, without restrictions regarding the language of the publications consulted. A total of 39 remedies for healing wolf bite injuries in humans and domestic animals was reported, highlighting the medicinal use of 33 species of vascular plants, mostly wild herbs, belonging to 18 botanical families. The use of wood ashes was also reported. The number of use-reports found represents a very high number considering similar European studies. Leaves were the predominant plant part mentioned. Boiling plant materials in water

Vocal anatomy, tongue protrusion behaviour and the acoustics of rutting roars in free-ranging Iberian red deer stags (Cervus elaphus hispanicus).

PubMed

Frey, Roland; Volodin, Ilya; Volodina, Elena; Carranza, Juan; Torres-Porras, Jerónimo

2012-03-01

Roaring in rutting Iberian red deer stags Cervus elaphus hispanicus is unusual compared to other subspecies of red deer, which radiated from the Iberian refugium after the last glacial maximum. In all red deer stags, the larynx occupies a permanent low mid-neck resting position and is momentarily retracted almost down to the rostral end of the sternum during the production of rutting calls. Simultaneous with the retraction of the larynx, male Iberian red deer pronouncedly protrude the tongue during most of their rutting roars. This poses a mechanical challenge for the vocal tract (vt) and for the hyoid apparatus, as tongue and larynx are strongly pulled in opposite directions. This study (i) examines the vocal anatomy and the acoustics of the rutting roars in free-ranging male C. e. hispanicus; (ii) establishes a potential mechanism of simultaneous tongue protrusion and larynx retraction by applying a two-dimensional model based on graphic reconstructions in single video frames of unrestrained animals; and (iii) advances a hypothesis of evaporative cooling by tongue protrusion in the males of a subspecies of red deer constrained to perform all of the exhausting rutting activities, including acoustic display, in a hot and arid season. © 2012 The Authors. Journal of Anatomy © 2012 Anatomical Society.

Vocal anatomy, tongue protrusion behaviour and the acoustics of rutting roars in free-ranging Iberian red deer stags (Cervus elaphus hispanicus)

PubMed Central

Frey, Roland; Volodin, Ilya; Volodina, Elena; Carranza, Juan; Torres-Porras, Jerónimo

2012-01-01

Roaring in rutting Iberian red deer stags Cervus elaphus hispanicus is unusual compared to other subspecies of red deer, which radiated from the Iberian refugium after the last glacial maximum. In all red deer stags, the larynx occupies a permanent low mid-neck resting position and is momentarily retracted almost down to the rostral end of the sternum during the production of rutting calls. Simultaneous with the retraction of the larynx, male Iberian red deer pronouncedly protrude the tongue during most of their rutting roars. This poses a mechanical challenge for the vocal tract (vt) and for the hyoid apparatus, as tongue and larynx are strongly pulled in opposite directions. This study (i) examines the vocal anatomy and the acoustics of the rutting roars in free-ranging male C. e. hispanicus; (ii) establishes a potential mechanism of simultaneous tongue protrusion and larynx retraction by applying a two-dimensional model based on graphic reconstructions in single video frames of unrestrained animals; and (iii) advances a hypothesis of evaporative cooling by tongue protrusion in the males of a subspecies of red deer constrained to perform all of the exhausting rutting activities, including acoustic display, in a hot and arid season. PMID:22257361

An Iberian climatology of solar radiation obtained from WRF regional climate simulations for 1950-2010 period

NASA Astrophysics Data System (ADS)

Perdigão, João; Salgado, Rui; Magarreiro, Clarisse; Soares, Pedro M. M.; Costa, Maria João; Dasari, Hari Prasad

2017-12-01

The mesoscale Weather Research and Forecasting (WRF) Model is used over the Iberian Peninsula to generate 60 years (1950-2010) of climate data, at 5 km resolution, in order to evaluate and characterize the incident shortwave downward radiation at the surface (SW ↓), in present climate. The simulated values of SW ↓ in the period 2000-2009 were compared with data measured in Spanish and Portuguese meteorological stations before and a statistical BIAS correction was applied using data from Clouds and the Earth's Radiant Energy System (CERES), on board four different satellites. The spatial and temporal comparison between WRF results and observations show a good agreement for the analyzed period, although the model overestimates observations. This overestimation has a mean normalized bias of about 7% after BIAS correction (or 17% for original WRF output). Additionally, the present simulation was confronted against another previously validated WRF simulation performed with different resolution and set of parametrizations, showing comparable results. WRF adequately reproduces the observational features of SW ↓ with correlation coefficients above 0.8 in annual and seasonal basis. 60 years of simulated SW ↓ over the Iberian Peninsula were produced, which showed annual mean values that range from 130 W/m2, in the northern regions, to a maximum of around 230 W/m2 in the southeast of the Iberian Peninsula (IP). SW ↓ over IP shows a positive gradient from north to south and from west to east, with local effects influenced by topography and distance to the coast. The analysis of the simulated cloud fraction indicates that clear sky days are found in > 30% of the period at the southern area of IP, particularly in the Algarve (Portugal) and Andalusia (Spain), and this value increases significantly in the summer season for values above 80%.

Assessing methods for developing crop forecasting in the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Ines, A. V. M.; Capa Morocho, M. I.; Baethgen, W.; Rodriguez-Fonseca, B.; Han, E.; Ruiz Ramos, M.

2015-12-01

Seasonal climate prediction may allow predicting crop yield to reduce the vulnerability of agricultural production to climate variability and its extremes. It has been already demonstrated that seasonal climate predictions at European (or Iberian) scale from ensembles of global coupled climate models have some skill (Palmer et al., 2004). The limited predictability that exhibits the atmosphere in mid-latitudes, and therefore de Iberian Peninsula (PI), can be managed by a probabilistic approach based in terciles. This study presents an application for the IP of two methods for linking tercile-based seasonal climate forecasts with crop models to improve crop predictability. Two methods were evaluated and applied for disaggregating seasonal rainfall forecasts into daily weather realizations: 1) a stochastic weather generator and 2) a forecast tercile resampler. Both methods were evaluated in a case study where the impacts of two seasonal rainfall forecasts (wet and dry forecast for 1998 and 2015 respectively) on rainfed wheat yield and irrigation requirements of maize in IP were analyzed. Simulated wheat yield and irrigation requirements of maize were computed with the crop models CERES-wheat and CERES-maize which are included in Decision Support System for Agrotechnology Transfer (DSSAT v.4.5, Hoogenboom et al., 2010). Simulations were run at several locations in Spain where the crop model was calibrated and validated with independent field data. These methodologies would allow quantifying the benefits and risks of a seasonal climate forecast to potential users as farmers, agroindustry and insurance companies in the IP. Therefore, we would be able to establish early warning systems and to design crop management adaptation strategies that take advantage of favorable conditions or reduce the effect of adverse ones. ReferencesPalmer, T. et al., 2004. Development of a European multimodel ensemble system for seasonal-to-interannual prediction (DEMETER). Bulletin of the

A resolution congratulating the Minnesota Lynx women's basketball team on winning the 2013 Women's National Basketball Association Championship.

THOMAS, 113th Congress

Sen. Franken, Al [D-MN

2013-11-14

Senate - 11/14/2013 Submitted in the Senate, considered, and agreed to without amendment and with a preamble by Unanimous Consent. (All Actions) Tracker: This bill has the status Agreed to in SenateHere are the steps for Status of Legislation:

Seroprevalence, isolation, and co-infection of multiple Toxoplasma gondii strains in individual bobcats (Lynx rufus) from Mississippi, USA

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii causes lifelong chronic infection in both feline definitive hosts and intermediate hosts. Multiple exposures of the parasite are likely to occur in nature because of high environmental contamination. Here, we present data of high seroprevalence and multiple T. gondii strain co-infe...

High resolution reconstruction of monthly precipitation of Iberian Peninsula using circulation weather types

NASA Astrophysics Data System (ADS)

Cortesi, N.; Trigo, R.; Gonzalez-Hidalgo, J. C.; Ramos, A. M.

2012-06-01

Precipitation over the Iberian Peninsula (IP) is highly variable and shows large spatial contrasts between wet mountainous regions, to the north, and dry regions in the inland plains and southern areas. In this work, a high-density monthly precipitation dataset for the IP was coupled with a set of 26 atmospheric circulation weather types (Trigo and DaCamara, 2000) to reconstruct Iberian monthly precipitation from October to May with a very high resolution of 3030 precipitation series (overall mean density one station each 200 km2). A stepwise linear regression model with forward selection was used to develop monthly reconstructed precipitation series calibrated and validated over 1948-2003 period. Validation was conducted by means of a leave-one-out cross-validation over the calibration period. The results show a good model performance for selected months, with a mean coefficient of variation (CV) around 0.6 for validation period, being particularly robust over the western and central sectors of IP, while the predicted values in the Mediterranean and northern coastal areas are less acute. We show for three long stations (Lisbon, Madrid and Valencia) the comparison between model and original data as an example to how these models can be used in order to obtain monthly precipitation fields since the 1850s over most of IP for this very high density network.

Trichinella pseudospiralis in the Iberian peninsula.

PubMed

Zamora, M J; Alvarez, M; Olmedo, J; Blanco, M C; Pozio, E

2015-06-15

Nematode worms of the genus Trichinella are zoonotic parasites circulating in most continents, including Europe. In Spain, Trichinella spiralis and Trichinella britovi are highly prevalent in wildlife but seldom in domestic pigs. In Portugal, only T. britovi was documented in wild carnivores. In the period 2006-2013 in Spain, 384 (0.0001%) pigs and 1399 (0.20%) wild boars (Sus scrofa) were positive for Trichinella spp. larvae, which were identified as T. spiralis or T. britovi. In 2014, Trichinella pseudospiralis larvae were isolated from a wild boar hunted in the Gerona province, Cataluña region, North-East of Spain, near the border to France. This is the first report of T. pseudospiralis in the Iberian peninsula, which suggests a broad distribution area of this zoonotic nematode in Europe. Since larvae of this Trichinella species do not encapsulate in the host muscles, they can be detected only by artificial digestion of muscle samples. T. pseudospiralis is the only Trichinella species infecting both mammals and birds. Birds can spread this pathogen over great distances including islands triggering new foci of infections in areas previously considered at low risk for this pathogen. Copyright © 2015 Elsevier B.V. All rights reserved.