DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation

PubMed Central

Gebremedhin, Berihun; Flagstad, Øystein; Bekele, Afework; Chala, Desalegn; Bakkestuen, Vegar; Boessenkool, Sanne; Popp, Magnus; Gussarova, Galina; Schrøder-Nielsen, Audun; Nemomissa, Sileshi; Brochmann, Christian; Stenseth, Nils Chr.

2016-01-01

Human population expansion and associated degradation of the habitat of many wildlife species cause loss of biodiversity and species extinctions. The small Simen Mountains National Park in Ethiopia is one of the last strongholds for the preservation of a number of afro-alpine mammals, plants and birds, and it is home to the rare endemic Walia ibex, Capra walie. The narrow distribution range of this species as well as potential competition for resources with livestock, especially with domestic goat, Capra hircus, may compromise its future survival. Based on a curated afro-alpine taxonomic reference library constructed for plant taxon identification, we investigated the diet of the Walia ibex and addressed the dietary overlap with domestic goat using DNA metabarcoding of faecal samples. Faeces of both species were collected from different localities in the National Park. We show that both species are browsers, with forbs, shrubs and trees comprising the largest proportion of their diet, supplemented by grasses. There was a considerable overlap in dietary preferences. Several of the preferred diet items of the Walia ibex (Alchemilla sp., Hypericum revolutum, Erica arborea and Rumex sp.) were also among the most preferred diet items of the domestic goat. These results indicate that there is potential for competition between the two species, especially during the dry season, when resources are limited. Our findings, in combination with the expected increase in domestic herbivores, suggest that management plans should consider the potential threat posed by domestic goats to ensure future survival of the endangered Walia ibex. PMID:27416020

Ibex-associated malignant catarrhal fever-like disease in a group of bongo antelope (Tragelaphus euryceros)

USDA-ARS?s Scientific Manuscript database

A private zoological facility experienced an outbreak of fatal malignant catarrhal fever (MCF) in a group of bongo antelope (Tragelaphus euryceros). Three periparturient female bongos exhibited an acute onset of anorexia beginning ~6 weeks after being housed with a Nubian ibex (Capra nubiana). Disea...

First Results from the Interstellar Boundary Explorer (IBEX) Mission

NASA Astrophysics Data System (ADS)

McComas, David J.

2010-03-01

The Interstellar Boundary Explorer (IBEX) is a Small Explorer mission designed to study the global interaction between the heliosphere and the local interstellar medium. IBEX does this by measuring energetic neutral atoms (ENAs) created by both solar wind ions and pickup ions in the solar wind when they charge exchange with cold interstellar neutrals drifting in from the interstellar medium. Because the ENAs are not magnetically confined, some of them propagate back into the inner heliosphere, where IBEX can detect them. IBEX was launched October 19th 2008, using a new launch technique that was also developed as a part of the IBEX project. The first scientific observations from IBEX were of ENAs coming from the Moon-these represented the first ever lunar ENA observations from any spacecraft and provided important information about the universal physical processes of backscatter and neutralization from complex planetary surfaces like the lunar regolith. Since then, IBEX has been collecting its first all-sky maps of heliospheric ENAs and initial direct, in situ observations of interstellar H, He, and O. At the time of this writing, these observations have been submitted and are under review for a special IBEX section of Science magazine nominally scheduled to be published in October 2009.

A Look at Six Years of IBEX

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2015-10-01

The objective of the Interstellar Boundary Explorer, or IBEX, is to study the interaction between the solar wind and the interstellar medium (ISM) at the outer boundary of our solar system. In a special issue of the Astrophysical Journal Supplement Series, a set of 14 papers presents some of the most recent scientific results to come from the first six years of IBEX data.The Heliosphere and IBEXThe IBEX spacecraft, launched in October 2008. [NASA]As the solar wind streams outward, it blows a bubble into the ISM known as the heliosphere. The outer boundary of the heliosphere, where the solar wind is no longer able to push the ISM out of the way, marks the edge of our solar system. Wed like to understand the composition and properties of both the heliosphere and the local interstellar environment, as well as the processes at work in the interstellar space around our Sun.How do we learn about these things? One approach is to send spacecraft to the edge of the heliosphere to make measurements, such as Voyagers 1 and 2. But these spacecraft are only able to measure properties at their specific locations and since the heliosphere doesnt appear to be symmetric, this is a major limitation. This is where IBEX comes in.IBEXs orbit around the Earth, at various stages in the Earths orbit around the Sun. IBEX makes its observations while outside of the Earths magnetosphere (purple shaded region). [SwRI/IBEX Team]IBEX is a spacecraft on a highly elliptical orbit around Earth. Its orbit takes it outside of the Earths magnetosphere, where its able to detect neutral atoms of varying energies that have traveled from the outer edges of our solar system. IBEXs observations are therefore of particles rather than light; the spacecraft detects the directions and energies of roughly 600 particles per day. This data has provided us with a full 3D view of the outer boundary of the heliosphere.IBEXs detections rely on two types of particles: 1) energetic neutral atoms, which are produced by

Evidence of three new members of malignant catarrhal fever virus group in Muskox (Ovibos moschatus), Nubian ibex (Capra nubiana), and gemsbok (Oryx gazella)

USGS Publications Warehouse

Li, H.; Gailbreath, K.; Bender, L.C.; West, K.; Keller, J.; Crawford, T.B.

2003-01-01

Six members of the malignant catarrhal fever (MCF) virus group of ruminant rhadinoviruses have been identified to date. Four of these viruses are clearly associated with clinical disease: alcelaphine herpesvirus 1 (AlHV-1) carried by wildebeest (Connochaetes spp.); ovine herpesvirus 2 (OvHV-2), ubiquitous in domestic sheep; caprine herpesvirus 2 (CpHV-2), endemic in domestic goats; and the virus of unknown origin found causing classic MCF in white-tailed deer (Odocoileus virginianus; MCFV-WTD). Using serology and polymerase chain reaction with degenerate primers targeting a portion of the herpesviral DNA polymerase gene, evidence of three previously unrecognized rhadinoviruses in the MCF virus group was found in muskox (Ovibos moschatus), Nubian ibex (Capra nubiana), and gemsbok (South African oryx, Oryx gazella), respectively. Based on sequence alignment, the viral sequence in the muskox is most closely related to MCFV-WTD (81.5% sequence identity) and that in the Nubian ibex is closest to CpHV-2 (89.3% identity). The viral sequence in the gemsbok is most closely related to AlHV-1 (85.1% identity). No evidence of disease association with these viruses has been found. ?? Wildlife Disease Association 2003.

Effect of shortening the prefreezing equilibration time with glycerol on the quality of chamois (Rupicapra pyrenaica), ibex (Capra pyrenaica), mouflon (Ovis musimon) and aoudad (Ammotragus lervia) ejaculates.

PubMed

Pradiee, J; O'Brien, E; Esteso, M C; Castaño, C; Toledano-Díaz, A; Lopez-Sebastián, A; Marcos-Beltrán, J L; Vega, R S; Guillamón, F G; Martínez-Nevado, E; Guerra, R; Santiago-Moreno, J

2016-08-01

The present study reports the effect of shortening the prefreezing equilibration time with glycerol on the quality of frozen-thawed ejaculated sperm from four Mediterranean mountain ungulates: Cantabrian chamois (Rupicapra pyrenaica), Iberian ibex (Capra pyrenaica), mouflon (Ovis musimon) and aoudad (Ammotragus lervia). Ejaculated sperm from these species were divided into two aliquots. One was diluted with either a Tris-citric acid-glucose based medium (TCG-glycerol; for chamois and ibex sperm) or a Tris-TES-glucose-based medium (TTG-glycerol; for mouflon and aoudad sperm), and maintained at 5°C for 3h prior to freezing. The other aliquot was diluted with either TCG (chamois and ibex sperm) or TTG (mouflon and aoudad sperm) and maintained at 5°C for 1h before adding glycerol (final concentration 5%). After a 15min equilibration period in the presence of glycerol, the samples were frozen. For the ibex, there was enhanced (P<0.05) sperm viability and acrosome integrity after the 3h as compared with the 15min equilibration time. For the chamois, subjective sperm motility and cell membrane functional integrity were less (P<0.05) following 15min of equilibration. In the mouflon, progressive sperm motility and acrosome integrity was less (P<0.05) when the equilibration time was reduced to 15min. For the aoudad, the majority of sperm variables measured were more desirable after the 3h equilibration time. The freezing-thawing processes reduced the sperm head size in all the species studied; however, the equilibration time further affected the frozen-thawed sperm head variables in a species-dependent fashion. While the equilibration time for chamois sperm might be shortened, this appears not to be the case for all ungulates. Copyright © 2016 Elsevier B.V. All rights reserved.

IBEX Mission update: New discoveries and a new orbit

NASA Astrophysics Data System (ADS)

McComas, D. J.; IBEX Science Team

2011-12-01

The Interstellar Boundary Explorer (IBEX) mission has been remotely observing the global interaction of our heliosphere with the local interstellar medium for over two and a half years. Initially, IBEX generated the first all-sky maps of Energetic Neutral Atoms (ENAs) emanating in from the boundaries of our heliosphere over the energy range from ~0.1-6 keV. Using these observations, the IBEX team discovered a smoothly varying, globally distributed ENA flux overlaid by a narrow "ribbon" of significantly enhanced ENA emissions. Since the initial publications of these results in a special issue of Science magazine (November 2009), IBEX has completed four more energy-resolved sets of sky maps and discovered small but important time variations in the interaction, separated the ribbon from globally distributed ENA fluxes, measured the energy spectral shape and inferred ion source temperatures, and carried out many other observational and theoretical studies. In addition, IBEX made the first observations of ENAs produced by backscatter and neutralization of the solar wind from the lunar regolith and provided the first energy and angle resolved ENA images of the subsolar magnetosheath and magnetospheric cusps and plasma sheet. Most recently, direct IBEX observations of Interstellar Neutral (ISN) He show that the speed and direction (the motion of the heliosphere with respect to the interstellar medium) is different than that thought from prior Ulysses observations. These observations also show evidence for a previously unknown and unanticipated secondary population of Helium. In addition, IBEX is providing the first direct quantitative measurements of the ISN H parameters and the first direct measurements of interstellar Ne and the interstellar Neon/Oxygen abundance ratio; this ratio is significantly different than the solar abundance ratio. IBEX was recently maneuvered into a unique, long-term stable orbit and has several decades worth of fuel for routine operations. Thus

IBEX: an open infrastructure software platform to facilitate collaborative work in radiomics.

PubMed

Zhang, Lifei; Fried, David V; Fave, Xenia J; Hunter, Luke A; Yang, Jinzhong; Court, Laurence E

2015-03-01

Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (IBEX), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. The IBEX software package was developed using the MATLAB and c/c++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, IBEX is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, IBEX provides an integrated development environment on top of MATLAB and c/c++, so users are not limited to its built-in functions. In the IBEX developer studio, users can plug in, debug, and test new algorithms, extending IBEX's functionality. IBEX also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the IBEX workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between institutions

The interstellar boundary explorer (IBEX): Update at the end of phase B

NASA Astrophysics Data System (ADS)

McComas, D. J.; Allegrini, F.; Bartolone, L.; Bochsler, P.; Bzowski, M.; Collier, M.; Fahr, H.; Fichtner, H.; Frisch, P.; Funsten, H.; Fuselier, Steve; Gloeckler, G.; Gruntman, M.; Izmodenov, V.; Knappenberger, P.; Lee, M.; Livi, S.; Mitchell, D.; Möbius, E.; Moore, T.; Pope, S.; Reisenfeld, D.; Roelof, E.; Runge, H.; Scherrer, J.; Schwadron, N.; Tyler, R.; Wieser, M.; Witte, M.; Wurz, P.; Zank, G.

2006-09-01

The Interstellar Boundary Explorer (IBEX) mission will make the first global observations of the heliosphere's interaction with the interstellar medium. IBEX achieves these breakthrough observations by traveling outside of the Earth's magnetosphere in a highly elliptical orbit and taking global Energetic Neutral Atoms (ENA) images over energies from ~10 eV to 6 keV. IBEX's high-apogee (~50 RE) orbit enables heliospheric ENA measurements by providing viewing from far above the Earth's relatively bright magnetospheric ENA emissions. This high energy orbit is achieved from a Pegasus XL launch vehicle by adding the propulsion from an IBEX-supplied solid rocket motor and the spacecraft's hydrazine propulsion system. IBEX carries two very large-aperture, single-pixel ENA cameras that view perpendicular to the spacecraft's Sun-pointed spin axis. Each six months, the continuous spinning of the spacecraft and periodic re-pointing to maintain the sun-pointing spin axis naturally lead to global, all-sky images. Over the course of our NASA Phase B program, the IBEX team optimized the designs of all subsystems. In this paper we summarize several significant advances in both IBEX sensors, our expected signal to noise (and background), and our groundbreaking approach to achieve a very high-altitude orbit from a Pegasus launch vehicle for the first time. IBEX is in full scale development and on track for launch in June of 2008.

Enhanced Resolution Maps of Energetic Neutral Atoms from IBEX

NASA Astrophysics Data System (ADS)

Teodoro, L. A.; Elphic, R. C.; Janzen, P.; Reisenfeld, D.; Wilson, J. T.

2017-12-01

The discovery by the Interstellar Boundary Explorer (IBEX) of a "Ribbon" in the measurements of Energetic Neutral Particles (ENA) was a major surprise that lead to the re-thinking of the Physics underpinning the heliosphere-intergalactic medium boundary dynamics. Several physical models have been proposed and tested in their ability to mimic the IBEX observations. Some of the ENA IBEX's include the following features: 1) The presence of fine structure within the ribbon suggests that the physical properties of it exhibit small-scale spacial structure and possibly rapid small-scale variations. 2) The ribbon is a fairly narrow feature at low energies and broadens with increasing energy;The IBEX detectors were designed to maximize count rate by incorporating wide angular and broad energy acceptance. Thus far, the existing mapping software used by the IBEX Science Operation Center has not been design with the "Ribbon" ( 20o wide) in mind: the current generation of maps are binned in 6o longitude pixels by 6o latitude pixels (so the pixels are all of the same size in angle and are quite "blocky"). Furthermore, the instrumental point spread function has not been deconvolved, making any potential narrow features broader than they are. An improvement in the spatial resolution of the IBEX maps would foster a better understanding of the Ribbon and its substructure, and thus reply to some of the basic and profound questions related to its origin, the nature of the outer boundaries of the our solar system and the surrounding interstellar Galactic medium.Here we report on the application of the Bayesian image reconstruction algorithm "Speedy Pixons" to the ENA data with the aim to sharpen the ENA IBEX maps. A preliminary application allow us to conclude that: The peaks in the count rate do appear to be more enhanced in the reconstruction; The reconstruction is clearly denoised; The "Ribbon" is better defined in the reconstruction. We are currently studying the implications of

REVISITING THE ISN FLOW PARAMETERS, USING A VARIABLE IBEX POINTING STRATEGY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leonard, T. W.; Möbius, E.; Heirtzler, D.

2015-05-01

The Interstellar Boundary Explorer (IBEX) has observed the interstellar neutral (ISN) gas flow over the past 6 yr during winter/spring when the Earth’s motion opposes the ISN flow. Since IBEX observes the interstellar atom trajectories near their perihelion, we can use an analytical model based upon orbital mechanics to determine the interstellar parameters. Interstellar flow latitude, velocity, and temperature are coupled to the flow longitude and are restricted by the IBEX observations to a narrow tube in this parameter space. In our original analysis we found that pointing the spacecraft spin axis slightly out of the ecliptic plane significantly influencesmore » the ISN flow vector determination. Introducing the spacecraft spin axis tilt into the analytical model has shown that IBEX observations with various spin axis tilt orientations can substantially reduce the range of acceptable solutions to the ISN flow parameters as a function of flow longitude. The IBEX operations team pointed the IBEX spin axis almost exactly within the ecliptic plane during the 2012–2014 seasons, and about 5° below the ecliptic for half of the 2014 season. In its current implementation the analytical model describes the ISN flow most precisely for the spin axis orientation exactly in the ecliptic. This analysis refines the derived ISN flow parameters with a possible reconciliation between velocity vectors found with IBEX and Ulysses, resulting in a flow longitude λ{sub ∞} = 74.°5 ± 1.°7 and latitude β{sub ∞} = −5.°2 ± 0.°3, but at a substantially higher ISN temperature than previously reported.« less

Update on IBEX and the outer boundary of the space radiation environment

NASA Astrophysics Data System (ADS)

McComas, D. J.; IBEX Science Team

2012-11-01

The Interstellar Boundary Explorer (IBEX) mission has been remotely observing the global interaction of our heliosphere with the local interstellar medium for over three years. Initially, IBEX generated the first all-sky maps of Energetic Neutral Atoms (ENAs) emanating in from the boundaries of our heliosphere over the energy range from ˜0.1-6 keV. Using these observations, the IBEX team discovered a smoothly varying, globally distributed ENA flux overlaid by a narrow "ribbon" of significantly enhanced ENA emissions. Since the initial publication of these results in a special issue of Science magazine (November 2009), IBEX has completed five more energy-resolved sets of sky maps and discovered small but important time variations in the interaction, separated the ribbon from globally distributed ENA fluxes, measured the energy spectral shape and inferred ion source temperatures, and carried out many other observational and theoretical studies of the outer heliosphere. In a second major area of observations - direct measurements of Interstellar Neutral (ISN) atoms - just published, IBEX observations of ISN He atoms show that the speed and direction (the motion of the heliosphere with respect to the interstellar medium) is slower and from a somewhat different direction than that thought from prior Ulysses observations. These observations also show evidence for a previously unknown and unanticipated secondary population of Helium. In addition, IBEX is providing the first direct quantitative measurements of the ISN H parameters and the first direct measurements of interstellar Ne and the interstellar Neon/Oxygen abundance ratio; this ratio is significantly different than the solar abundance ratio. Finally, IBEX was recently maneuvered into a unique, long-term stable orbit, which has a very low radiation environment and requires no orbit maintenance. Thus, IBEX will likely continue to provide revolutionary observations of the outer heliosphere and local interstellar

ibex: An open infrastructure software platform to facilitate collaborative work in radiomics

PubMed Central

Zhang, Lifei; Fried, David V.; Fave, Xenia J.; Hunter, Luke A.; Court, Laurence E.

2015-01-01

Purpose: Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (ibex), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. Methods: The ibex software package was developed using the matlab and c/c++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, ibex is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, ibex provides an integrated development environment on top of matlab and c/c++, so users are not limited to its built-in functions. In the ibex developer studio, users can plug in, debug, and test new algorithms, extending ibex’s functionality. ibex also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the ibex workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between

Editorial: Interstellar Boundary Explorer (IBEX): Direct Sampling of the Interstellar Medium

NASA Astrophysics Data System (ADS)

McComas, D. J.

2012-02-01

This special supplement issue of the Astrophysical Journal comprises six coordinated papers that provide the first detailed analyses of the direct sampling of interstellar neutral atoms by the Interstellar Boundary Explorer (IBEX). Interstellar atoms are the detritus of older stars—their stellar winds, novae, and supernovae—spread across the galaxy, which fill the vast interstellar space between the stars. The very local interstellar medium around the Sun is filled with both ionized and neutral atoms with approximately equal numbers, and occasional ionization, charge exchange, and recombination makes them a single interacting material over large distances. IBEX (McComas et al. 2009a) is a NASA Small Explorer mission with the sole, focused science objective to discover the global interaction between the solar wind and the interstellar medium; this objective has primarily been achieved by taking the first global energetic neutral atom (ENA) images, which provide detailed ENA fluxes and energy spectra over all look directions in space. IBEX was launched 2008 October 19 and subsequently maneuvered into a high-altitude, highly elliptical (~15,000 × 300,000 km), roughly week-long orbit. The payload comprises two very high sensitivity, single-pixel ENA cameras: IBEX-Hi (Funsten et al. 2009a), which measures ENAs from ~300 eV to 6 keV, and IBEX-Lo (Fuselier et al. 2009a), which measures ENAs from ~10 eV to 2 keV. The initial IBEX ENA results were published together in a special issue of Science magazine (McComas et al. 2009b; Funsten et al. 2009b; Fuselier et al. 2009b; Schwadron et al. 2009). Since then there have been numerous additional studies of the IBEX ENA observations of the heliosphere, as well as ENAs from the Moon and Earth's magnetosphere (see recent review by McComas et al. 2011 and references therein). Prior to IBEX, the only interstellar neutral atoms to be directly sampled were He, observed by the Ulysses spacecraft a decade ago (Witte et al. 1996

What We've Learned from IBEX ENA Imaging of the Heliosheath

NASA Astrophysics Data System (ADS)

Zirnstein, E.

2017-12-01

The Interstellar Boundary Explorer (IBEX) is an Earth-orbiting spacecraft equipped with two single-pixel cameras that detect neutral atoms produced by the interaction of the solar wind (SW) with the very local interstellar medium (VLISM), as well as neutral atoms flowing in from the VLISM itself. Since its launch in 2009, IBEX has provided us with over half a solar cycle of measurements of energetic neutral atom (ENA) fluxes produced in the heliosphere. In particular, a large number of these ENAs originate in the inner heliosheath, a region of nearly incompressible SW plasma that is slowed, compressed, and heated at the termination shock. As the heated SW plasma flows through the heliosheath and down the heliotail, charge-exchange with cold neutral atoms from the VLISM generates ENAs that travel on ballistic trajectories. Some of these ENAs travel to Earth and are detected by IBEX. IBEX all-sky observations of these ENAs show a unique energy and spatial dependence, revealing the structural and plasma properties of the heliosheath. One of the prime scientific objectives of the Interstellar Mapping and Acceleration Probe (IMAP) mission is to understand the SW-VLISM interaction, including the properties of the heliosheath and heliotail. This talk will review key IBEX observations of the inner heliosheath environment, the way they have shaped our understanding of the SW-VLISM interaction, and their implications for the upcoming IMAP mission.

Simulating the Compton-Getting effect for hydrogen flux measurements: Implications for IBEX-Hi and -Lo observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; Heerikhuisen, J.; McComas, D. J.

The Interstellar Boundary EXplorer (IBEX), launched in 2008 October, has improved our understanding of the solar wind-local interstellar medium interaction through its detection of neutral atoms, particularly that of hydrogen (H). IBEX is able to create full maps of the sky in six-month intervals as the Earth orbits the Sun, detecting H with energies between ∼0.01 and 6 keV. Due to the relative motion of IBEX to the solar inertial frame, measurements made in the spacecraft frame introduce a Compton-Getting (CG) effect, complicating measurements at the lowest energies. In this paper we provide results from a numerical simulation that calculatesmore » fluxes of H atoms at 1 AU in the inertial and spacecraft frames (both ram and anti-ram), at energies relevant to IBEX-Hi and -Lo. We show theory behind the numerical simulations, applying a simple frame transformation to derived flux equations that provides a straightforward way to simulate fluxes in the spacecraft frame. We then show results of H energetic neutral atom fluxes simulated at IBEX-Hi energy passbands 2-6 in all frames, comparing with IBEX-Hi data along selected directions, and also show results simulated at energies relevant to IBEX-Lo. Although simulations at IBEX-Hi energies agree reasonably well with the CG correction method used for IBEX-Hi data, we demonstrate the importance of properly modeling low energy H fluxes due to inherent complexities involved with measurements made in moving frames, as well as dynamic radiation pressure effects close to the Sun.« less

Uniting ecological and genetic data for the conservation of wild ibex

Treesearch

M. K. Schwartz

2009-01-01

There are few taxa more endangered than the Ethiopian Walia ibex. This wild mountain goat inhabits the Simen Mountains of Ethiopia and is known for its enormous backwards curving horns that exceed a meter in length on some males. Historically, hunting and habitat degradation endangered this ibex's persistence. Now this national symbol of Ethiopia is threatened by...

Brucella melitensis in France: Persistence in Wildlife and Probable Spillover from Alpine Ibex to Domestic Animals

PubMed Central

Mick, Virginie; Le Carrou, Gilles; Corde, Yannick; Game, Yvette; Jay, Maryne; Garin-Bastuji, Bruno

2014-01-01

Bovine brucellosis is a major zoonosis, mainly caused by Brucella abortus, more rarely by Brucella melitensis. France has been bovine brucellosis officially-free since 2005 with no cases reported in domestic/wild ruminants since 2003. In 2012, bovine and autochthonous human cases due to B. melitensis biovar 3 (Bmel3) occurred in the French Alps. Epidemiological investigations implemented in wild and domestic ruminants evidenced a high seroprevalence (>45%) in Alpine ibex (Capra ibex); no cases were disclosed in other domestic or wild ruminants, except for one isolated case in a chamois (Rupicapra rupicapra). These results raised the question of a possible persistence/emergence of Brucella in wildlife. The purpose of this study was to assess genetic relationships among the Bmel3 strains historically isolated in humans, domestic and wild ruminants in Southeastern France, over two decades, by the MLVA-panel2B assay, and to propose a possible explanation for the origin of the recent bovine and human infections. Indeed, this genotyping strategy proved to be efficient for this microepidemiological investigation using an interpretation cut-off established for a fine-scale setting. The isolates, from the 2012 domestic/human outbreak harbored an identical genotype, confirming a recent and direct contamination from cattle to human. Interestingly, they clustered not only with isolates from wildlife in 2012, but also with local historical domestic isolates, in particular with the 1999 last bovine case in the same massif. Altogether, our results suggest that the recent bovine outbreak could have originated from the Alpine ibex population. This is the first report of a B. melitensis spillover from wildlife to domestic ruminants and the sustainability of the infection in Alpine ibex. However, this wild population, reintroduced in the 1970s in an almost closed massif, might be considered as a semi-domestic free-ranging herd. Anthropogenic factors could therefore account with the

Influences of Mating Group Composition on the Behavioral Time-Budget of Male and Female Alpine Ibex (Capra ibex) during the Rut

PubMed Central

Tettamanti, Federico; Viblanc, Vincent A.

2014-01-01

During the rut, polygynous ungulates gather in mixed groups of individuals of different sex and age. Group social composition, which may vary on a daily basis, is likely to have strong influences on individual’s time-budget, with emerging properties at the group-level. To date, few studies have considered the influence of group composition on male and female behavioral time budget in mating groups. Focusing on a wild population of Alpine ibex, we investigated the influence of group composition (adult sex ratio, the proportion of dominant to subordinate males, and group size) on three behavioral axes obtained by Principal Components Analysis, describing male and female group time-budget. For both sexes, the first behavioral axis discerned a trade-off between grazing and standing/vigilance behavior. In females, group vigilance behavior increased with increasingly male-biased sex ratio, whereas in males, the effect of adult sex ratio on standing/vigilance behavior depended on the relative proportion of dominant males in the mating group. The second axis characterized courtship and male-male agonistic behavior in males, and moving and male-directed agonistic behavior in females. Mating group composition did not substantially influence this axis in males. However, moving and male-directed agonistic behavior increased at highly biased sex ratios (quadratic effect) in females. Finally, the third axis highlighted a trade-off between moving and lying behavior in males, and distinguished moving and female-female agonistic behavior from lying behavior in females. For males, those behaviors were influenced by a complex interaction between group size and adult sex ratio, whereas in females, moving and female-female agonistic behaviors increased in a quadratic fashion at highly biased sex ratios, and also increased with increasing group size. Our results reveal complex behavioral trade-offs depending on group composition in the Alpine ibex, and emphasize the importance of

Heliospheric Neutral Atom Spectra Between 0.01 and 6 keV fom IBEX

NASA Technical Reports Server (NTRS)

Fuselier, S. A.; Allegrini, F.; Bzowski, M.; Funsten, H. O.; Ghielmetti, A. G.; Gloeckler, G.; Heirtzler, D.; Janzen, P.; Kubiak, M.; Kucharek, H.;

Seven Years of Imaging the Global Heliosphere with IBEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

McComas, D. J.; Zirnstein, E. J.; Bzowski, M.

2017-04-01

The Interstellar Boundary Explorer ( IBEX ) has now operated in space for 7 years and returned nearly continuous observations that have led to scientific discoveries and reshaped our entire understanding of the outer heliosphere and its interaction with the local interstellar medium. Here we extend prior work, adding the 2014–2015 data for the first time, and examine, validate, initially analyze, and provide a complete 7-year set of Energetic Neutral Atom (ENA) observations from ∼0.1 to 6 keV. The data, maps, and documentation provided here represent the 10th major release of IBEX data and include improvements to various prior correctionsmore » to provide the citable reference for the current version of IBEX data. We are now able to study time variations in the outer heliosphere and interstellar interaction over more than half a solar cycle. We find that the Ribbon has evolved differently than the globally distributed flux (GDF), with a leveling off and partial recovery of ENAs from the GDF, owing to solar wind output flattening and recovery. The Ribbon has now also lost its latitudinal ordering, which reflects the breakdown of solar minimum solar wind conditions and exhibits a greater time delay than for the surrounding GDF. Together, the IBEX observations strongly support a secondary ENA source for the Ribbon, and we suggest that this be adopted as the nominal explanation of the Ribbon going forward.« less

International Border Electronic Clearance -- IBEX : evaluation report

DOT National Transportation Integrated Search

1998-07-01

The International Border Electronic Crossing (IBEX) system implemented in this operational test was intended to demonstrate the integration of electronic information systems and technologies aimed at facilitating the safe, efficient movement of goods...

IBEX: The Evolving Global View and Synergies with In Situ Voyager Observations

NASA Astrophysics Data System (ADS)

McComas, D. J.

2015-12-01

The Interstellar Boundary Explorer (IBEX) has now returned nearly seven years of observations, which comprise 14 full sets of energy resolved all-sky maps and provide the global view of our Sun's interaction with very local part of the galaxy. With such a long baseline of observations, we are able to examine time variations in the outer heliosphere as it responds to both 11-year solar cycle variations and longer term secular evolution of the three dimensional solar wind. Now that we have collected over half a solar cycle of observations, IBEX is beginning to show us how the heliosphere - our home in the galaxy - varies in time as well as space. In this talk we present the most recent observations and review some other recent discoveries from IBEX. We also examine the synergy between the global view provided by IBEX and the in situ observations form the Voyager 1 and 2 spacecraft. Finally, we discuss the incredible improvement in interstellar observations - and our understanding of the local interstellar medium - that the Interstellar Mapping and Acceleration Probe (IMAP) will provide.

ON THE GEOMETRY OF THE IBEX RIBBON

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sylla, Adama; Fichtner, Horst

2015-10-01

The Energetic Neutral Atom (ENA) full-sky maps obtained with the Interstellar Boundary Explorer (IBEX) show an unexpected bright narrow band of increased intensity. This so-called ENA ribbon results from charge exchange of interstellar neutral atoms with protons in the outer heliosphere or beyond. Among other hypotheses it has been argued that this ribbon may be related to a neutral density enhancement, or H-wave, in the local interstellar medium. Here we quantitatively demonstrate, on the basis of an analytical model of the principal large-scale heliospheric structure, that this scenario for the ribbon formation leads to results that are fully consistent withmore » the observed location of the ribbon in the full-sky maps at all energies detected with high-energy sensor IBEX-Hi.« less

Energetic neutral atom and interstellar flow observations with IBEX: Implications for the global heliosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwadron, N. A., E-mail: nschwadron@unh.edu; Southwest Research Institute, San Antonio, TX, 78238; McComas, D. J.

2016-03-25

Since launch in Oct. 2008, IBEX, with its two energetic neutral atom (ENA) cameras, has provided humankind with the first-ever global images of the complex boundary separating the heliosphere from the local interstellar medium (LISM). IBEX’s energy-resolved all-sky maps, collected every six months, are yielding remarkable new insights into the heliospheres structure as it is shaped by the combined forces of the local interstellar flow, the local interstellar magnetic field (LISMF), and the evolving solar wind. IBEX has also acquired the first images of ENAs backscattered from the surface of the moon as well as global images of the magnetosphericmore » response to solar wind disturbances. IBEX thus addresses all three Heliophysics science objectives set forth in the 2014 Science Plan for NASAs Science Mission Directorate (SMD) as well as the goals in the recent Solar and Space Physics Decadal Survey (NRC 2012). In addition, with the information it provides on the properties of the LISM and the LISMF, IBEX represents a unique bridge between heliophysics and astrophysics, and fills in critical knowledge for understanding the habitability of exoplanetary systems and the future habitability of Earth and the solar system. Because of the few-year time lag due to solar wind and ENA transport, IBEX observed the solar wind/ LISM interaction characteristic of declining phase/solar minimum conditions. In the continuing mission, IBEX captures the response of the interstellar boundaries to the changing structure of the solar wind in its transition toward the “mini” solar maximum and possibly the decline into the next solar minimum. The continuing IBEX mission affords never-to-be-repeated opportunities to coordinate global imaging of the heliospheric boundary with in-situ measurements by the Voyagers as they pass beyond the heliopause and start to directly sample the LISM.« less

Postepizootic Persistence of Asymptomatic Mycoplasma conjunctivae Infection in Iberian Ibex

PubMed Central

Cabezón, Oscar; Granados, José Enrique; Frey, Joachim; Serrano, Emmanuel; Velarde, Roser; Cano-Manuel, Francisco Javier; Mentaberre, Gregorio; Ráez-Bravo, Arián; Fandos, Paulino

2017-01-01

ABSTRACT The susceptibility of the Iberian ibex (Capra pyrenaica) to Mycoplasma conjunctivae ocular infection and the changes in their interaction over time were studied in terms of clinical outcome, molecular detection, and IgG immune response in a captive population that underwent a severe infectious keratoconjunctivitis (IKC) outbreak. Mycoplasma conjunctivae was detected in the Iberian ibex, coinciding with the IKC outbreak. Its prevalence had a decreasing trend in 2013 that was consistent with the clinical resolution (August, 35.4%; September, 8.7%; November, 4.3%). Infections without clinical outcome were, however, still detected in the last handling in November. Sequencing and cluster analyses of the M. conjunctivae strains found 1 year later in the ibex population confirmed the persistence of the same strain lineage that caused the IKC outbreak but with a high prevalence (75.3%) of mostly asymptomatic infections and with lower DNA load of M. conjunctivae in the eyes (mean quantitative PCR [qPCR] cycle threshold [CT], 36.1 versus 20.3 in severe IKC). Significant age-related differences of M. conjunctivae prevalence were observed only under IKC epizootic conditions. No substantial effect of systemic IgG on M. conjunctivae DNA in the eye was evidenced with a linear mixed-models selection, which indicated that systemic IgG does not necessarily drive the resolution of M. conjunctivae infection and does not explain the epidemiological changes observed. The results show how both epidemiological scenarios, i.e., severe IKC outbreak and mostly asymptomatic infections, can consecutively occur by entailing mycoplasma persistence. IMPORTANCE Mycoplasma infections are reported in a wide range of epidemiological scenarios that involve severe disease to asymptomatic infections. This study allows a better understanding of the transition between two different Mycoplasma conjunctivae epidemiological scenarios described in wild host populations and highlights the ability of M

Position of the IBEX ribbon as a key to understand its origin

NASA Astrophysics Data System (ADS)

Swaczyna, Pawel; Bzowski, Maciej; Sokół, Justyna M.; Christian, Eric R.; Funsten, Herbert O.; McComas, David J.; Schwadron, Nathan A.

2017-04-01

Observations of the energetic neutral atom (ENA) emission by the Interstellar Boundary Explorer (IBEX) allow for remote sensing of the plasma properties in heliosheath. The first IBEX results revealed an unexpected arc-like enhancement of the ENA flux in the sky, dubbed the IBEX ribbon. This discovery led to formulation of more than a dozen hypotheses on its origin. The emission source region proposed in these hypotheses span the heliospheric termination shock up to a hypothetical nearby interface between the Local Interstellar Cloud and a local bay in the Local Bubble. Among these hypotheses is the concept that the ribbon is produced by the secondary ENA mechanism, operating in the outer heliosheath. The observational strategy of IBEX allows observation of the same part of the sky from the opposite sides of the Sun every six months and thus provides parallax viewing with a baseline of 2 AU. After correcting the observations for the Compton-Getting effect and for gravitational deflection and radiation pressure, we use this parallax viewing to precisely determine the apparent position of the maximum flux associated with the ribbon. We find that the ribbon peak position differs semi-annually by an angle of 0.41±0.15 deg, which we interpret as the parallax effect. This angle corresponds to a distance of 140-38+84 AU, and thus suggests that most likely the ribbon's source is located just beyond the heliopause. Comparison of the IBEX ribbon position in five energy steps of IBEX-Hi shows a systematic shift, which changes the position of the ribbon center by ˜10 deg. We find that it can be explained using an analytic model of the secondary ENA mechanism with the neutralized supersonic solar wind as the source of the primary ENAs, which are ionized in the outer heliosheath, picked up by the ambient magnetic field, and eventually re-neutralized (as originally conceived, McComas et al. 2009). We use a realistic model of the solar wind evolution dependent on heliographic

What shapes fitness costs of reproduction in long-lived iteroparous species? A case study on the Alpine ibex.

PubMed

Garnier, Alexandre; Gaillard, Jean-Michel; Gauthier, Dominique; Besnard, Aurélien

2016-01-01

The fitness costs of reproduction can be masked by individual differences, and may only become apparent during adverse environmental conditions. Individual differences, however, are usually assessed by reproductive success, so how fitness costs are influenced by the interplay between the environmental context and overall individual differences requires further investigation. Here, we evaluated fitness costs of reproduction based on 15 yr of monitoring of individual Alpine ibex (Capra ibex) during a period when the population was affected by a severe disease outbreak (pneumonia). We quantified fitness costs using a novel multi-event capture-mark-recapture (CMR) modeling approach that accounted for uncertainty in reproductive status to estimate the survival and reproductive success of female ibex while also accounting for overall individual heterogeneity using mixture models. Our results show that the ability of females to reproduce was highly heterogeneous. In particular, one group including 76% of females had a much higher probability of giving birth annually (between 0.66 and 0.77, depending on the previous reproductive status) than females of the second group (24% of females, between 0 and 0.05 probability of giving birth annually). Low reproductive costs in terms of future reproduction occurred and were independent of the pneumonia outbreak. There was no survival cost of reproduction either before or after the epizootic, but the cost was high during the epizootic. Our findings indicate that adverse environmental conditions, such as disease outbreaks, may lead to survival costs of reproduction in long-lived species and select against females that have a high reproductive effort. Thereby, the occurrence of adverse conditions increases the diversity of reproductive tactics within a population.

Observing the Interstellar Neutral He Gas Flow with a Variable IBEX Pointing Strategy

NASA Astrophysics Data System (ADS)

Leonard, T.; Moebius, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; McComas, D. J.; Schwadron, N.; Wurz, P.

2015-12-01

The Interstellar Neutral (ISN) gas flow can be observed at Earth's orbit due to the motion of the solar system relative to the surrounding interstellar gas. Since He is minimally influenced by ionization and charge exchange, the ISN He flow provides a sample of the pristine interstellar environment. The Interstellar Boundary Explorer (IBEX) has observed the ISN gas flow over the past 7 years from a highly elliptical orbit around the Earth. IBEX is a Sun-pointing spinning spacecraft with energetic neutral atom (ENA) detectors observing perpendicular to the spacecraft spin axis. Due to the Earth's orbital motion around the Sun, it is necessary for IBEX to perform spin axis pointing maneuvers every few days to maintain a sunward pointed spin axis. The IBEX operations team has successfully pointed the spin axis in a variety of latitude orientations during the mission, including in the ecliptic during the 2012 and 2013 seasons, about 5 degrees below the ecliptic during the 2014 season, and recently about 5 degrees above the ecliptic during the 2015 season, as well as optimizing observations with the spin axis pointed along the Earth-Sun line. These observations include a growing number of measurements near the perihelion of the interstellar atom trajectories, which allow for an improved determination of the ISN He bulk flow longitude at Earth orbit. Combining these bulk flow measurements with an analytical model (Lee et al. 2012 ApJS, 198, 10) based upon orbital mechanics improves the knowledge of the narrow ISN parameter tube, obtained with IBEX, which couples the interstellar inflow longitude, latitude, speed, and temperature.

Assessing the Impact of Capture on Wild Animals: The Case Study of Chemical Immobilisation on Alpine Ibex.

PubMed

Brivio, Francesca; Grignolio, Stefano; Sica, Nicoletta; Cerise, Stefano; Bassano, Bruno

2015-01-01

The importance of capturing wild animals for research and conservation projects is widely shared. As this activity continues to become more common, the need to assess its negative effects increases so as to ensure ethical standards and the validity of research results. Increasing evidence has revealed that indirect (physiological and behavioural) effects of capture are as important as direct risks (death or injury) and that different capture methodologies can cause heterogeneous effects. We investigated the influence of chemical immobilisation on Alpine ibex (Capra ibex): during the days following the capture we collected data on spatial behaviour, activity levels of both males and females, and male hormone levels. Moreover, we recorded the reproductive status of each marked female during the breeding seasons of 15 years. Then, by several a priori models we investigated the effects of the capture taking into account biological factors and changes in environmental conditions. Our results showed that chemical immobilisation did not affect either spatial behaviour (for both males and females) or male hormone levels, though both sexes showed reduced activity levels up to two days after the capture. The capture did not significantly affect the likelihood for a female to give birth in the following summer. Our findings highlighted the scarce impact of chemical immobilisation on ibex biology, as we detected alteration of activity levels only immediately after the capture if compared to the following days (i.e., baseline situation). Hence, the comparison of our findings with previous research showed that our methodology is one of the less invasive procedures to capture large mammals. Nonetheless, in areas characterised by high predator density, we suggest that animals released be carefully monitored for some hours after the capture. Moreover, researchers should avoid considering data collected during the first days after the manipulation in order to avoid biased

Assessing the Impact of Capture on Wild Animals: The Case Study of Chemical Immobilisation on Alpine Ibex

PubMed Central

Brivio, Francesca; Grignolio, Stefano; Sica, Nicoletta; Cerise, Stefano; Bassano, Bruno

2015-01-01

The importance of capturing wild animals for research and conservation projects is widely shared. As this activity continues to become more common, the need to assess its negative effects increases so as to ensure ethical standards and the validity of research results. Increasing evidence has revealed that indirect (physiological and behavioural) effects of capture are as important as direct risks (death or injury) and that different capture methodologies can cause heterogeneous effects. We investigated the influence of chemical immobilisation on Alpine ibex (Capra ibex): during the days following the capture we collected data on spatial behaviour, activity levels of both males and females, and male hormone levels. Moreover, we recorded the reproductive status of each marked female during the breeding seasons of 15 years. Then, by several a priori models we investigated the effects of the capture taking into account biological factors and changes in environmental conditions. Our results showed that chemical immobilisation did not affect either spatial behaviour (for both males and females) or male hormone levels, though both sexes showed reduced activity levels up to two days after the capture. The capture did not significantly affect the likelihood for a female to give birth in the following summer. Our findings highlighted the scarce impact of chemical immobilisation on ibex biology, as we detected alteration of activity levels only immediately after the capture if compared to the following days (i.e., baseline situation). Hence, the comparison of our findings with previous research showed that our methodology is one of the less invasive procedures to capture large mammals. Nonetheless, in areas characterised by high predator density, we suggest that animals released be carefully monitored for some hours after the capture. Moreover, researchers should avoid considering data collected during the first days after the manipulation in order to avoid biased

Heliosphere Responds to a Large Solar Wind Intensification: Decisive Observations from IBEX

NASA Astrophysics Data System (ADS)

McComas, D. J.; Dayeh, M. A.; Funsten, H. O.; Heerikhuisen, J.; Janzen, P. H.; Reisenfeld, D. B.; Schwadron, N. A.; Szalay, J. R.; Zirnstein, E. J.

2018-03-01

Our heliosphere—the bubble in the local interstellar medium produced by the Sun’s outflowing solar wind—has finally responded to a large increase in solar wind output and pressure in the second half of 2014. NASA’s Interstellar Boundary Explorer (IBEX) mission remotely monitors the outer heliosphere by observing energetic neutral atoms (ENAs) returning from the heliosheath, the region between the termination shock and heliopause. IBEX observed a significant enhancement in higher energy ENAs starting in late 2016. While IBEX observations over the previous decade reflected a general reduction of ENA intensities, indicative of a deflating heliosphere, new observations show that the large (∼50%), persistent increase in the solar wind dynamic pressure has modified the heliosheath, producing enhanced ENA emissions. The combination of these new observations with simulation results indicate that this pressure is re-expanding our heliosphere, with the termination shock and heliopause already driven outward in the locations closest to the Sun. The timing between the IBEX observations, a large transient pressure enhancement seen by Voyager 2, and the simulations indicates that the pressure increase propagated through the heliosheath, reflected off the heliopause, and the enhanced density of the solar wind filled the heliosheath behind it before generating significantly enhanced ENA emissions. The coming years should see significant changes in anomalous cosmic rays, galactic cosmic radiation, and the filtration of interstellar neutral atoms into the inner heliosphere.

CAN IBEX DETECT INTERSTELLAR NEUTRAL HELIUM OR OXYGEN FROM ANTI-RAM DIRECTIONS?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galli, A.; Wurz, P.; Park, J.

To better constrain the parameters of the interstellar neutral flow, we searched the Interstellar Boundary EXplorer (IBEX)-Lo database for helium and oxygen from the interstellar medium in the anti-ram direction in the three years (2009–2011) with the lowest background rates. We found that IBEX-Lo cannot observe interstellar helium from the anti-ram direction because the helium energy is too low for indirect detection by sputtering off the IBEX-Lo conversion surface. Our results show that this sputtering process has a low energy threshold between 25 and 30 eV, whereas the energy of the incident helium is only 10 eV for these observations.more » Interstellar oxygen, on the other hand, could in principle be detected in the anti-ram hemisphere, but the expected magnitude of the signal is close to the detection limit imposed by counting statistics and by the magnetospheric foreground.« less

IBEX Observations and Simulations of the Ribbon: Implications for the Very Local Interstellar Medium

NASA Astrophysics Data System (ADS)

Zirnstein, E.

2017-12-01

The crossing of the Voyager 1 spacecraft into the very local interstellar medium (VLISM) in 2012 August opened a new chapter in humankind's exploration of space. Voyager 1 has been measuring interstellar plasma properties outside the heliosphere, including the galactic cosmic ray flux, (indirectly) the compressed interstellar plasma, as well as the compressed interstellar magnetic field draped around the heliosphere. Interstellar Boundary Explorer (IBEX) neutral atom observations complement the only in situ observations of the VLISM made by Voyager 1. IBEX is an Earth-orbiting spacecraft equipped with two single-pixel cameras that detect neutral atoms produced by the interaction of the solar wind (SW) with the VLISM, as well as neutral atoms flowing into the heliosphere from the VLISM itself. After its launch in 2009, IBEX discovered the unexpected existence of the "ribbon," a nearly circular arc across the sky of enhanced hydrogen ENA fluxes observed at keV energies. The ribbon fluxes originate from look directions perpendicular to the local interstellar magnetic field draped around the heliosphere, and can be used to derive the VLISM magnetic field magnitude and direction far from the heliopause. Thus, IBEX observations of the ribbon complement Voyager 1 in situ observations of the VLISM magnetic field, and provide insight into what Voyager 2 will observe after it crosses the heliopause. This talk will review key IBEX observations of the VLISM environment related to the ribbon and the VLISM magnetic field observed by Voyager 1, and their implications for the VLISM environment.

Neutral interstellar helium parameters based on Ulysses/GAS and IBEX-LO observations: What are the reasons for the differences?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Katushkina, O. A.; Izmodenov, V. V.; Wood, B. E.

Recent analysis of the interstellar helium fluxes measured in 2009-2010 at Earth's orbit by the Interstellar Boundary Explorer (IBEX) has suggested that the interstellar velocity (both direction and magnitude) is inconsistent with that derived previously from Ulysses/GAS observations made in the period from 1990 to 2002 at 1.5-5.5 AU from the Sun. Both results are model dependent, and models that were used in the analyses are different. In this paper, we perform an analysis of the Ulysses/GAS and IBEX-Lo data using our state-of-the-art three-dimensional time-dependent kinetic model of interstellar atoms in the heliosphere. For the first time, we analyze Ulysses/GASmore » data from year 2007, the closest available Ulysses/GAS observations in time to the IBEX observations. We show that the interstellar velocity derived from the Ulysses 2007 data is consistent with previous Ulysses results and does not agree with the velocity derived from IBEX. This conclusion is very robust since, as is shown in the paper, it does not depend on the ionization rates adopted in theoretical models. We conclude that Ulysses data are not consistent with the new local interstellar medium (LISM) velocity vector from IBEX. In contrast, IBEX data, in principle, could be explained with the LISM velocity vector derived from the Ulysses data. This is possible for the models where the interstellar temperature increased from 6300 K to 9000 K. There is a need to perform further studies of possible reasons for the broadening of the helium signal core measured by IBEX, which could be an instrumental effect or could be due to unconsidered physical processes.« less

SEPARATION OF THE RIBBON FROM GLOBALLY DISTRIBUTED ENERGETIC NEUTRAL ATOM FLUX USING THE FIRST FIVE YEARS OF IBEX OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwadron, N. A.; Moebius, E.; Kucharek, H.

2014-11-01

The Interstellar Boundary Explorer (IBEX) observes the IBEX ribbon, which stretches across much of the sky observed in energetic neutral atoms (ENAs). The ribbon covers a narrow (∼20°-50°) region that is believed to be roughly perpendicular to the interstellar magnetic field. Superimposed on the IBEX ribbon is the globally distributed flux that is controlled by the processes and properties of the heliosheath. This is a second study that utilizes a previously developed technique to separate ENA emissions in the ribbon from the globally distributed flux. A transparency mask is applied over the ribbon and regions of high emissions. We thenmore » solve for the globally distributed flux using an interpolation scheme. Previously, ribbon separation techniques were applied to the first year of IBEX-Hi data at and above 0.71 keV. Here we extend the separation analysis down to 0.2 keV and to five years of IBEX data enabling first maps of the ribbon and the globally distributed flux across the full sky of ENA emissions. Our analysis shows the broadening of the ribbon peak at energies below 0.71 keV and demonstrates the apparent deformation of the ribbon in the nose and heliotail. We show global asymmetries of the heliosheath, including both deflection of the heliotail and differing widths of the lobes, in context of the direction, draping, and compression of the heliospheric magnetic field. We discuss implications of the ribbon maps for the wide array of concepts that attempt to explain the ribbon's origin. Thus, we present the five-year separation of the IBEX ribbon from the globally distributed flux in preparation for a formal IBEX data release of ribbon and globally distributed flux maps to the heliophysics community.« less

Summative Evaluation Findings from the Interstellar Boundary Explorer (IBEX) Education and Public Outreach Program

NASA Astrophysics Data System (ADS)

Bartolone, L.; Nichols-Yehling, M.; Davis, H. B.; Davey, B.

2014-07-01

The Interstellar Boundary Explorer mission includes a comprehensive Education and Public Outreach (EPO) program in heliophysics that is overseen and implemented by the Adler Planetarium and evaluated by Technology for Learning Consortium, Inc. Several components of the IBEX EPO program were developed during the prime phase of the mission that were specifically designed for use in informal institutions, especially museums and planetaria. The program included a widely distributed planetarium show with accompanying informal education activities, printed posters, lithographs and other resources, funding for the development of the GEMS Space Science Sequence for Grades 6-8 curriculum materials, development of the IBEX mission website, development of materials for people with special needs, participation in the Heliophysics Educator Ambassador program, and support for the Space Explorers Afterschool Science Club for Chicago Public Schools. In this paper, we present an overview of the IBEX EPO program summative evaluation techniques and results for 2008 through 2012.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, M. I.; McComas, D. J.; Dayeh, M. A.; Funsten, H. O.; Schwadron, N.; Heerikhuisen, J.; Fuselier, S. A.; Allegrini, F.; Pogorelov, N.; Zank, G. P.

2015-12-01

We investigate the latitude, energy, and time variations of the globally distributed ~0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (~0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ~2.29 and ~3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ~0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this work we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, Mihir; Heerikhuisen, Jacob; McComas, David; Funsten, Herbert; Pogorelov, Nikolai; Zank, Gary; Schwadron, Nathan; Fuselier, Stephen; Allegrini, Frederic; Dayeh, Maher A.

2016-07-01

We investigate the latitude, energy, and time variations of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ˜2.29 and ˜3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur within ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ˜0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this paper we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.

Latitude, Energy, and Time Variations of Energetic Neutral Atom Spectral indices Measured by IBEX

NASA Astrophysics Data System (ADS)

Desai, Mihir; McComas, David; Dayeh, Maher; Funsten, Herbert; Schwadron, Nathan; Heerikhuisen, Jacob; Fuselier, Stephen; Pogorelov, Nikolai; Zank, Gary; Allegrini, Frederic

2016-04-01

We investigate the latitude, energy, and time variations of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 5 years of the mission. Our previous results based on the first 3 years of IBEX observations showed that the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ˜2.29 and ˜3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. While these results confirmed the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere, we also showed that, unlike previous reports, the ˜0.5-6 keV globally distributed ENA spectral indices could not be represented as single power laws over much of the sky, and that they depend on energy and latitude. In this work we extend the above results to include years 4 and 5 of IBEX observations and investigate if the spectral indices vary as a function of time. Finally, we discuss implications of our results on models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere. We also discuss the implications of these new results for observational requirements for upcoming missions like IMAP.

Global anisotropies in TeV cosmic rays related to the Sun's local galactic environment from IBEX.

PubMed

Schwadron, N A; Adams, F C; Christian, E R; Desiati, P; Frisch, P; Funsten, H O; Jokipii, J R; McComas, D J; Moebius, E; Zank, G P

2014-02-28

Observations with the Interstellar Boundary Explorer (IBEX) have shown enhanced energetic neutral atom (ENA) emission from a narrow, circular ribbon likely centered on the direction of the local interstellar medium (LISM) magnetic field. Here, we show that recent determinations of the local interstellar velocity, based on interstellar atom measurements with IBEX, are consistent with the interstellar modulation of high-energy (tera-electron volts, TeV) cosmic rays and diffusive propagation from supernova sources revealed in global anisotropy maps of ground-based high-energy cosmic-ray observatories (Milagro, Asγ, and IceCube). Establishing a consistent local interstellar magnetic field direction using IBEX ENAs at hundreds to thousands of eV and galactic cosmic rays at tens of TeV has wide-ranging implications for the structure of our heliosphere and its interactions with the LISM, which is particularly important at the time when the Voyager spacecraft are leaving our heliosphere.

Global Anisotropies in TeV Cosmic Rays Related to the Sun's Local Galactic Environment from IBEX

NASA Technical Reports Server (NTRS)

Schwadron, N. A.; Adams, F. C.; Christian, E. R.; Desiati, P.; Frisch, P.; Funsten, H. O.; Jokipii, J. R.; McComas, D. J.; Moebius, E.; Zank, G. P.

2014-01-01

Observations with the Interstellar Boundary Explorer (IBEX) have shown enhanced energetic neutral atom (ENA) emission from a narrow, circular ribbon likely centered on the direction of the local interstellar medium (LISM) magnetic field. Here, we show that recent determinations of the local interstellar velocity, based on interstellar atom measurements with IBEX, are consistent with the interstellar modulation of high-energy (tera-electron volts, TeV) cosmic rays and diffusive propagation from supernova sources revealed in global anisotropy maps of ground-based high-energy cosmic-ray observatories (Milagro, Asg, and IceCube). Establishing a consistent local interstellar magnetic field direction using IBEX ENAs at hundreds to thousands of eV and galactic cosmic rays at tens of TeV has wide-ranging implications for the structure of our heliosphere and its interactions with the LISM, which is particularly important at the time when the Voyager spacecraft are leaving our heliosphere.

Energetic neutral atoms measured by the interstellar boundary explorer (IBEX): evidence for multiple heliosheath populations

DOE PAGES

Desai, M. I.; Allegrini, F. A.; Bzowski, M.; ...

2013-12-13

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. and Fuselier et al. and combine and compare ENA spectra from the first 3 yr of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sight (LOSs) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the three-dimensional heliosphere and its constituent ion populations. Our resultsmore » show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOSs of the Voyagers are consistent with several models in which the parent pickup ion (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. Here we discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. In conclusion, these results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.« less

Energetic Neutral Atoms Measured by the Interstellar Boundary Explorer (IBEX): Evidence for Multiple Heliosheath Populations

NASA Astrophysics Data System (ADS)

Desai, M. I.; Allegrini, F. A.; Bzowski, M.; Dayeh, M. A.; Funsten, H.; Fuselier, S. A.; Heerikhuisen, J.; Kubiak, M. A.; McComas, D. J.; Pogorelov, N. V.; Schwadron, N. A.; Sokół, J. M.; Zank, G. P.; Zirnstein, E. J.

2014-01-01

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. and Fuselier et al. and combine and compare ENA spectra from the first 3 yr of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sight (LOSs) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the three-dimensional heliosphere and its constituent ion populations. Our results show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOSs of the Voyagers are consistent with several models in which the parent pickup ion (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. These results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.

Designing Effective EPO Products for Museums: Preliminary Evaluation Findings from the Interstellar Boundary Explorer (IBEX) EPO Program

NASA Astrophysics Data System (ADS)

Nichols, M.; Bartolone, L.; Baldassari, C.; Hoyer-Winfield, S.

2011-09-01

The Interstellar Boundary Explorer (IBEX) mission includes a comprehensive EPO program in astronomy and heliophysics that is overseen and implemented by the Adler Planetarium in Chicago, Illinois. Several EPO components were developed specifically for informal institutions, especially museums and planetaria. The program includes an internationally distributed planetarium show with accompanying informal educational materials. Our evaluator, the Program Evaluation and Research Group (PERG) at Lesley University, Cambridge, Massachusetts, assesses the effectiveness of the EPO program. In late 2009 through early 2010, more than 70 planetaria worldwide received the IBEX planetarium show. Of the many U.S. planetaria, the first 25 received the IBEX planetarium show and were offered the opportunity to receive, at no charge, accompanying informal education materials, including posters, lithographs, demonstration materials, lesson plans, and more. In Spring 2010, PERG staff conducted a study designed to gauge the effectiveness of the distribution process for the planetarium show, gather information on the professional development needs of the organizations, and document reactions of museum staff to the IBEX informal education materials and their usefulness as companion pieces to the planetarium show. In this paper, we will present preliminary findings of this particular study, in the hopes that future EPO work can make use of data in this report.

LOCAL INTERSTELLAR MEDIUM: SIX YEARS OF DIRECT SAMPLING BY IBEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

McComas, D. J.; Fuselier, S. A.; Schwadron, N. A., E-mail: dmccomas@swri.edu, E-mail: sfuselier@swri.edu, E-mail: Nathan.schwadron@unh.edu

2015-10-15

The Interstellar Boundary Explorer (IBEX) has been directly observing neutral atoms from the local interstellar medium for the last six years (2009–2014). This paper ties together the 14 studies in this Astrophysical Journal Supplement Series Special Issue, which collectively describe the IBEX interstellar neutral results from this epoch and provide a number of other relevant theoretical and observational results. Interstellar neutrals interact with each other and with the ionized portion of the interstellar population in the “pristine” interstellar medium ahead of the heliosphere. Then, in the heliosphere's close vicinity, the interstellar medium begins to interact with escaping heliospheric neutrals. Inmore » this study, we compare the results from two major analysis approaches led by IBEX groups in New Hampshire and Warsaw. We also directly address the question of the distance upstream to the pristine interstellar medium and adjust both sets of results to a common distance of ∼1000 AU. The two analysis approaches are quite different, but yield fully consistent measurements of the interstellar He flow properties, further validating our findings. While detailed error bars are given for both approaches, we recommend that for most purposes, the community use “working values” of ∼25.4 km s{sup −1}, ∼75.°7 ecliptic inflow longitude, ∼ −5.°1 ecliptic inflow latitude, and ∼7500 K temperature at ∼1000 AU upstream. Finally, we briefly address future opportunities for even better interstellar neutral observations to be provided by the Interstellar Mapping and Acceleration Probe mission, which was recommended as the next major Heliophysics mission by the NRC's 2013 Decadal Survey.« less

Applicability of major histocompatibility complex DRB1 alleles as markers to detect vertebrate hybridization: a case study from Iberian ibex × domestic goat in southern Spain

PubMed Central

2012-01-01

Background Hybridization between closely related wild and domestic species is of great concern because it can alter the evolutionary integrity of the affected populations. The high allelic variability of Major Histocompatibility Complex (MHC) loci usually excludes them from being used in studies to detect hybridization events. However, if a) the parental species don’t share alleles, and b) one of the parental species possesses an exceptionally low number of alleles (to facilitate analysis), then even MHC loci have the potential to detect hybrids. Results By genotyping the exon2 of the MHC class II DRB1 locus, we were able to detect hybridization between domestic goats (Capra hircus) and free-ranging Iberian ibex (Capra pyrenaica hispanica) by molecular means. Conclusions This is the first documentation of a Capra pyrenaica × Capra hircus hybridization, which presented us the opportunity to test the applicability of MHC loci as new, simple, cost-effective, and time-saving approach to detect hybridization between wild species and their domesticated relatives, thus adding value to MHC genes role in animal conservation and management. PMID:23006678

Energetic Neutral Atoms Measured by the Interstellar Boundary Explorer (IBEX): Evidence for Multiple Heliosheath Ion Populations

NASA Astrophysics Data System (ADS)

Desai, M. I.; Allegrini, F.; Bzowski, M.; Dayeh, M. A.; Funsten, H. O.; Fuselier, S.; Kubiak, M. A.; McComas, D. J.; Pogorelov, N. V.; Schwadron, N.; Sokol, J. M.; Zank, G. P.; Zirnstein, E. J.

2013-12-01

Energetic Neutral Atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. In this paper, we extend the work of Desai et al. (2012) and Fuselier et al. (2012) and combine and compare ENA spectra from the first three years of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sights (LOS) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the 3D heliosphere and its constituent ion populations. Our results show that (1) IBEX ENA fluxes and spectra above ~0.7 keV measured along the LOS of the Voyagers are consistent with several models in which the parent pickup (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower-energy ENAs between ~0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We discuss the implications of ENAs observed by IBEX originating from distinct parent populations as well as from two distinct locations in the heliospheric interface. These results indicate that ENA spectral measurements at various energies can be used to remotely probe distinct physical processes operating in vastly different regions of the distant heliosphere.

Time Variations of the ENA Flux Observed by IBEX: Is the Outer Heliosphere Evolving?

NASA Astrophysics Data System (ADS)

McComas, D. J.; Bzowski, M.; Clark, G.; Crew, G. B.; Demajistre, R.; Funsten, H. O.; Fuselier, S. A.; Gruntman, M.; Janzen, P.; Livadiotis, G.; Moebius, E.; Reisenfeld, D. B.; Roelof, E. C.; Schwadron, N. A.

2009-12-01

The Interstellar Boundary Explorer (IBEX) mission has just provided the first global observations of the heliosphere’s interstellar interaction [McComas et al., 2009 and other papers in the IBEX special issue of Science]. IBEX all-sky maps and energy spectra provide detailed information about this interaction. Because of the way IBEX collects its observations, each swath of the sky is revisited every six months, with the winter viewing, when IBEX’s orbit is largely sunward of the Earth, providing significantly cleaner measurements than the summer season, when IBEX’s orbit rotates through the Earth’s magnetosheath and magnetotail. Very limited initial overlapping data showed that the observed structure was largely stable over the first six months of observations, however, it also suggested the tantalizing possibility that there could be some temporal evolution. By the time of the Fall AGU meeting, much of the sky will be imaged a second time. This study will provide a comparison of these sets of observations, especially at higher energies where the statistics are better, and directly address the question of if the outer heliosphere is evolving over timescales on the order of half a year. Reference McComas, D.J., F. Allegrini, P. Bochsler, M. Bzowski, E.R. Christian, G.B. Crew, R. DeMajistre, H. Fahr, H. Fichtner, P.C. Frisch, H.O. Funsten, S. A. Fuselier, G. Gloeckler, M. Gruntman, J. Heerikhuisen, V. Izmodenov, P. Janzen, P. Knappenberger, S. Krimigis, H. Kucharek, M. Lee, G. Livadiotis, S. Livi, R.J. MacDowall, D. Mitchell, E. Möbius, T. Moore, N.V. Pogorelov, D. Reisenfeld, E. Roelof, L. Saul, N.A. Schwadron, P.W. Valek, R. Vanderspek, P. Wurz, G.P. Zank, First Global Observations of the Interstellar Interaction from the Interstellar Boundary Explorer, submitted to Science, 2009.

Interstellar Gas Flow Vector and Temperature Determination over 5 Years of IBEX Observations

NASA Astrophysics Data System (ADS)

Möbius, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; Leonard, T.; McComas, D. J.; Schwadron, N.; Sokół, J. M.; Wurz, P.

2015-01-01

The Interstellar Boundary Explorer (IBEX) observes the interstellar neutral gas flow trajectories at their perihelion in Earth's orbit every year from December through early April, when the Earth's orbital motion is into the oncoming flow. These observations have defined a narrow region of possible, but very tightly coupled interstellar neutral flow parameters, with inflow speed, latitude, and temperature as well-defined functions of inflow longitude. The best- fit flow vector is different by ≈ 3° and lower by ≈ 3 km/s than obtained previously with Ulysses GAS, but the temperature is comparable. The possible coupled parameter space reaches to the previous flow vector, but only for a substantially higher temperature (by ≈ 2000 K). Along with recent pickup ion observations and including historical observations of the interstellar gas, these findings have led to a discussion, whether the interstellar gas flow into the solar system has been stable or variable over time. These intriguing possibilities call for more detailed analysis and a longer database. IBEX has accumulated observations over six interstellar flow seasons. We review key observations and refinements in the analysis, in particular, towards narrowing the uncertainties in the temperature determination. We also address ongoing attempts to optimize the flow vector determination through varying the IBEX spacecraft pointing and discuss related implications for the local interstellar cloud and its interaction with the heliosphere.

Interstellar Flow and Temperature Determination with IBEX: Robustness and Sensitivity to Systematic Effects

NASA Astrophysics Data System (ADS)

Möbius, E.; Bzowski, M.; Frisch, P. C.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; Leonard, T.; McComas, D. J.; Schwadron, N. A.; Sokół, J. M.; Swaczyna, P.; Wurz, P.

2015-10-01

The Interstellar Boundary Explorer (IBEX) samples the interstellar neutral (ISN) gas flow of several species every year from December through late March when the Earth moves into the incoming flow. The first quantitative analyses of these data resulted in a narrow tube in four-dimensional interstellar parameter space, which couples speed, flow latitude, flow longitude, and temperature, and center values with approximately 3° larger longitude and 3 km s-1 lower speed, but with temperatures similar to those obtained from observations by the Ulysses spacecraft. IBEX has now recorded six years of ISN flow observations, providing a large database over increasing solar activity and using varying viewing strategies. In this paper, we evaluate systematic effects that are important for the ISN flow vector and temperature determination. We find that all models in use return ISN parameters well within the observational uncertainties and that the derived ISN flow direction is resilient against uncertainties in the ionization rate. We establish observationally an effective IBEX-Lo pointing uncertainty of ±0.°18 in spin angle and confirm an uncertainty of ±0.°1 in longitude. We also show that the IBEX viewing strategy with different spin-axis orientations minimizes the impact of several systematic uncertainties, and thus improves the robustness of the measurement. The Helium Warm Breeze has likely contributed substantially to the somewhat different center values of the ISN flow vector. By separating the flow vector and temperature determination, we can mitigate these effects on the analysis, which returns an ISN flow vector very close to the Ulysses results, but with a substantially higher temperature. Due to coupling with the ISN flow speed along the ISN parameter tube, we provide the temperature {T}{VISN∞ }=8710+440/-680 K for {V}{ISN∞ }=26 {km} {{{s}}}-1 for comparison, where most of the uncertainty is systematic and likely due to the presence of the Warm Breeze.

The use of radio-collars for monitoring wildlife diseases: a case study from Iberian ibex affected by Sarcoptes scabiei in Sierra Nevada, Spain

PubMed Central

2013-01-01

Background Wildlife radio tracking has gained popularity during the recent past. Ecologists and conservationists use radio-collars for different purposes: animal movement monitoring, home range, productivity, population estimation, behaviour, habitat use, survival, and predator-prey interaction, among others. The aim of our present study is to highlight the application of radio-collars for wildlife diseases monitoring. The spread of wildlife diseases and the efficacy of management actions for controlling them propose serious challenges for ecologists and conservationists, since it is difficult to re-capture (or simply observe) the same animal in pre-determined temporal interval, but such difficulty is overcome by the use of gps-gsm radio collars. Methods In the present study we report, for the first time to our knowledge, the use of radio-collars in the monitoring of Iberian ibex affected by Sarcoptes scabiei in Sierra Nevada mountain range, Spain. Twenty-five moderate or slightly mangy animals were radio-collared between 2006 and 2013. Results The radio-collars allowed us to confirm the presence of resistance to S. scabiei within Iberian ibex population. Twenty (80%) of the collared animals recovered totally from mange, while the disease progressed in the other five Iberian ibex (20% of the collared animals) and the animals died. The average estimated recovery time of the resistant animals was 245 ± 277 days, and the estimated average survival time of the non-resistant Iberian ibex was 121 ± 71 days. Non-resistant animals survived at least 100 days, while all of them died with less than 200 days. Sixty per cent of the resistant animals were recovered with less than 200 days. Conclusions We report, for the first time, the successful use of radio collars for wildlife diseases monitoring using Iberian ibex/S. scabiei as a model. By using radio collars we documented that most of the Sarcoptes-infected Iberian ibex are resistant to this disease, and we

Interstellar Neutral Helium in the Heliosphere from IBEX Observations. V. Observations in IBEX-Lo ESA Steps 1, 2, and 3

NASA Astrophysics Data System (ADS)

Swaczyna, Paweł; Bzowski, Maciej; Kubiak, Marzena A.; Sokół, Justyna M.; Fuselier, Stephen A.; Galli, André; Heirtzler, David; Kucharek, Harald; McComas, David J.; Möbius, Eberhard; Schwadron, Nathan A.; Wurz, P.

2018-02-01

Direct-sampling observations of interstellar neutral (ISN) He by the Interstellar Boundary Explorer (IBEX) provide valuable insight into the physical state of and processes operating in the interstellar medium ahead of the heliosphere. The ISN He atom signals are observed at the four lowest ESA steps of the IBEX-Lo sensor. The observed signal is a mixture of the primary and secondary components of ISN He and H. Previously, only data from one of the ESA steps have been used. Here, we extend the analysis to data collected in the three lowest ESA steps with the strongest ISN He signal, for the observation seasons 2009–2015. The instrument sensitivity is modeled as a linear function of the atom impact speed onto the sensor’s conversion surface separately for each ESA step of the instrument. We find that the sensitivity increases from lower to higher ESA steps, but within each of the ESA steps it is a decreasing function of the atom impact speed. This result may be influenced by the hydrogen contribution, which was not included in the adopted model, but seems to exist in the signal. We conclude that the currently accepted temperature of ISN He and velocity of the Sun through the interstellar medium do not need a revision, and we sketch a plan of further data analysis aiming at investigating ISN H and a better understanding of the population of ISN He originating in the outer heliosheath.

THE ENERGY-DEPENDENT POSITION OF THE IBEX RIBBON DUE TO THE SOLAR WIND STRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swaczyna, Paweł; Bzowski, Maciej; Sokół, Justyna M., E-mail: pswaczyna@cbk.waw.pl

2016-08-10

Observations of energetic neutral atoms (ENAs) allow for remote studies of the condition of plasma in the heliosphere and the neighboring local interstellar medium. The first results from the Interstellar Boundary Explorer ( IBEX ) revealed an arc-like enhancement of the ENA intensity in the sky, known as the ribbon. The ribbon was not expected from the heliospheric models prior to the launch of IBEX . One proposed explanation for the ribbon is the mechanism of secondary ENA emission. The ribbon reveals energy-dependent structure in the relative intensity along its circumference and in its position. That is, the geometric centermore » of the ribbon varies systematically by about 10° in the energy range 0.7–4.3 keV. Here, we show by analytical modeling that this effect is a consequence of the helio-latitudinal structure of the solar wind reflected in the secondary ENAs. Along with a recently measured distance to the ribbon’s source just beyond the heliopause, our findings support the connection of the ribbon with the local interstellar magnetic field by the mechanism of secondary ENA emission. However, the magnitude of the center shift in the highest IBEX energy channel is much larger in the observations than expected from the modeling. This may be due to another, not currently recognized, process of ENA generation.« less

Investigating Global Ion and Neutral Atom Populations with IBEX and Voyager

NASA Technical Reports Server (NTRS)

Florinski, Vladimir

2016-01-01

The main objective of this project was to investigate pickup ion (PUI) production in the solar wind and heliosheath (the region between the termination shock and the heliopause) and compute the distributed energetic neutral atom fluxes throughout the helioshpere. The simulations were constrained by comparing the model output against observations from Ulysses, New Horizons, Voyager 1 and 2, and IBEX space probes. As evidenced by the number of peer reviewed journal publications resulting from the project (13 plus three submitted) and their citation rate (156 citations over three years), the project has made a lasting contribution to the field. The outcome is a significant improvement of our understanding of the pickup ion production and distribution in the distant heliosphere. The team has accomplished the entire set of tasks A-H set forth in the proposal. Namely, the transport modeling framework has been augmented with two populations of pickup ions (PUIs), the boundary conditions for the plasma and interstellar neutral hydrogen were verified against Ulysses and New Horizons PUI and an optimal set of velocity diffusion parameters established. The multi-component fluxes of PUIs were computed and isotropic velocity distributions generated for each cell in the computer simulation that covered the heliosphere from 1.5 AU to the heliopause. The distributions were carefully compared with in situ measurements at 3 AU (Ulysses), 12 AU (New Horizons), and 80-90 AU (Voyager 1 and 2) as well as those inferred from ENA fluxes measured by Cassini and IBEX (Wu et al., 2016). Some examples of modeldata comparison are shown in Figure 1. We have used coupled MHD-plasma and kinetic-neutral code to investigate the likely range of plasma and magnetic field parameters in the local interstellar medium (LISM), based on the assumption that the shape of the IBEX ribbon could be used to determine the orientation of the interstellar magnetic field. While the magnetic field is believed to be

Global Properties of the Heliospheric Termination Shock as inferred from Energetic Neutral Atoms measured by the Interstellar Boundary Explorer (IBEX)

NASA Astrophysics Data System (ADS)

Desai, Mihir; Heerikhuisen, Jacob; McComas, David; Pogorelov, Nikolai; Zank, Gary; Dayeh, Maher; Schwadron, Nathan; Allegrini, Frederic; Zirnstein, Eric

Energetic Neutral Atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. Desai et al. (2012; 2013) combined and compared ENA spectra from the first three years of observations by the IBEX-Hi and -Lo ENA imagers along the lines-of-sights (LOS) from the inner heliosphere through to the locations of Voyager 1 and 2 with results from an updated physics-based model of the 3D heliosphere and its constituent ion populations. These results showed that (1) IBEX ENA fluxes and spectra above ˜0.7 keV measured along the LOS of the Voyagers are consistent with several models in which the parent pickup (PUI) populations originate in the inner heliosheath, and (2) a significant fraction of lower-energy ENAs between ˜0.1-0.5 keV may originate from interstellar neutral gas charge-exchanging with a non-thermalized (hot) population of PUIs in the outer heliosheath beyond the heliopause. We use these results and model the full sky IBEX-Hi energy spectra to probe the microphysical processes occurring in the inner heliospheath near the termination shock and then infer the global properties (e.g., latitudinal and longitudinal variations of the shock compression ratio) of the termination shock.

Diagnosing the Neutral Interstellar Gas Flow at 1 AU with IBEX-Lo

NASA Astrophysics Data System (ADS)

Möbius, E.; Kucharek, H.; Clark, G.; O'Neill, M.; Petersen, L.; Bzowski, M.; Saul, L.; Wurz, P.; Fuselier, S. A.; Izmodenov, V. V.; McComas, D. J.; Müller, H. R.; Alexashov, D. B.

2009-08-01

Every year in fall and spring the Interstellar Boundary Explorer (IBEX) will observe directly the interstellar gas flow at 1 AU over periods of several months. The IBEX-Lo sensor employs a powerful triple time-of-flight mass spectrometer. It can distinguish and image the O and He flow distributions in the northern fall and spring, making use of sensor viewing perpendicular to the Sun-pointing spin axis. To effectively image the narrow flow distributions IBEX-Lo has a high angular resolution quadrant in its collimator. This quadrant is employed selectively for the interstellar gas flow viewing in the spring by electrostatically shutting off the remainder of the aperture. The operational scenarios, the expected data, and the necessary modeling to extract the interstellar parameters and the conditions in the heliospheric boundary are described. The combination of two key interstellar species will facilitate a direct comparison of the pristine interstellar flow, represented by He, which has not been altered in the heliospheric boundary region, with a flow that is processed in the outer heliosheath, represented by O. The O flow distribution consists of a depleted pristine component and decelerated and heated neutrals. Extracting the latter so-called secondary component of interstellar neutrals will provide quantitative constraints for several important parameters of the heliosheath interaction in current global heliospheric models. Finding the fraction and width of the secondary component yields an independent value for the global filtration factor of species, such as O and H. Thus far filtration can only be inferred, barring observations in the local interstellar cloud proper. The direction of the secondary component will provide independent information on the interstellar magnetic field strength and orientation, which has been inferred from SOHO SWAN Ly- α backscattering observations and the two Voyager crossings of the termination shock.

Unraveling the genetic history of the European wild goats

NASA Astrophysics Data System (ADS)

Ureña, I.; Ersmark, E.; Samaniego, J. A.; Galindo-Pellicena, M. A.; Crégut-Bonnoure, E.; Bolívar, H.; Gómez-Olivencia, A.; Rios-Garaizar, J.; Garate, D.; Dalén, L.; Arsuaga, J. L.; Valdiosera, C. E.

2018-04-01

The population history of the Iberian wild goat and the Alpine ibex has been closely related to that of humans since the Palaeolithic. Current molecular and paleontological studies differ substantially on the phylogenetic origin of the European wild goats, possibly due the loss of genetic variation through time. We investigated the phylogenetic relationship between the Alpine ibex (Capra ibex) and the Iberian wild goat (Capra pyrenaica) including different Iberian wild goat subspecies by applying ancient DNA techniques combined with Next Generation Sequencing technologies. We analysed the cytochrome b gene of the mitochondrial genome in 33 ancient and modern European wild goats from Spain and France together with publicly available genetic information of modern wild goats. This work uncovers for the first time ancient genetic information of the Iberian wild goat and the Alpine ibex, spanning a time range of approximately 40,000 years to the present. Our results suggest genetic continuity between ancient and modern populations and indicate a monophyletic origin of the Alpine ibex and the Iberian wild goat when compared to other Capra species. The monophyly of both species is in agreement with other molecular studies based only on modern populations, therefore supporting one-wave migration of wild goats into Western Europe followed by possible allopatric speciation. We observe three major clades of wild goats in Western Europe: Capra ibex, Capra pyrenaica pyrenaica and the group containing the subspecies Capra pyrenaica hispanica and Capra pyrenaica victoriae. This genetic structure recognizes the distinctiveness of the bucardo (C. p. pyrenaica) from the rest of Iberian wild goats and thus supports the idea that this group is an Evolutionary Significant Unit. The divergence time estimated here indicates an almost contemporaneous split between the three clades around 50,000-90,000 years BP.

Physiological responses and characteristics of sperm collected after electroejaculation or transrectal ultrasound-guided massage of the accessory sex glands in anesthetized mouflons (Ovis musimon) and Iberian ibexes (Capra pyrenaica).

PubMed

Ungerfeld, Rodolfo; López-Sebastián, Antonio; Esteso, Milagros; Pradiee, Jorgea; Toledano-Díaz, Adolfo; Castaño, Cristina; Labrador, Beatriz; Santiago-Moreno, Julián

2015-10-15

The objective was to characterize the stress response and the seminal parameters obtained with electroejaculation (EE) or transrectal ultrasound-guided massage of the accessory sex glands (TUMASG) in two captive but nondomestic ruminants, the mouflons and the Iberian ibex under general anesthesia. In mouflons, the physiological responses (heart and respiratory rate, rectal temperature, cortisol, creatine kinase, potassium and glucose concentrations) changed similarly with both procedures. The TUMASG procedure was faster than EE in mouflons (21.7 ± 1.4 vs. 12.4 ± 1.2 minutes, P < 0.01). In ibexes, respiratory rate, cortisol and creatine kinase concentration changes were greater with EE than with TUMASG (final respiratory rate: 62.7 ± 5.5 vs. 38.1 ± 5.6 breaths/min [P < 0.05]; final cortisol: 51.4 ± 5.1 vs. 25.3 ± 5.6 ng/mL [P < 0.001]; and final creatine kinase: 300.9 ± 99.9 vs. 87.1 ± 16.9 U/L [P < 0.001]). Electroejaculation provided better results in some sperm parameters (mouflons: sperm score: 3.4 ± 0.3 vs. 2.6 ± 0.2 [P < 0.01]; total number of sperm ejaculated: 982.4 ± 299 vs. 710.0 ± 542.2 [P < 0.05]; ibexes: sperm with progressive motility: 47.7 ± 6.2 vs. 20.5 ± 8.3 [P < 0.05]). The transrectal ultrasound-guided massage of the accessory sex glands appears to be an alternative technique to collect sperm from wild ruminants, reducing the need for electrical stimuli and thus decreasing the undesired responses of EE in the more sensitive species. On the other hand, better fresh sperm may be collected with EE. However, TUMASG provides practical advantages in animal welfare, firstly in these wild species more sensible to stress management and capture myopathy. Copyright © 2015 Elsevier Inc. All rights reserved.

Sperm characteristics and heterologous in vitro fertilisation capacity of Iberian ibex (Capra pyrenaica) epididymal sperm, frozen in the presence of the enzymatic antioxidant catalase.

PubMed

López-Saucedo, J; Paramio, M T; Fierro, R; Izquierdo, D; Catalá, M G; Coloma, M A; Toledano-Díaz, A; López-Sebastián, A; Santiago-Moreno, J

2014-06-01

The aim of this work was to evaluate the protective effect of catalase (CAT) on frozen/thawed ibex epididymal sperm recovered post mortem, and to detect any harmful effect this might have on sperm fertilisation capacity. Epididymal spermatozoa were diluted using a Tris-citric acid-glucose medium (TCG) composed of 3.8% Tris (w/v), 2.2% citric acid (w/v), 0.6% glucose (w/v), 5% glycerol (v/v), and 6% egg yolk (v/v). Sperm masses from the right epididymis were diluted with TCG medium, while those from the left were diluted with TCG medium supplemented with 200IU/mL CAT. Heterologous in vitro fertilisation (IVF) was used to assess the fertilisation capacity of this sperm. The addition of CAT to the extender did not improve frozen/thawed sperm variables. Moreover, a reduced fertilisation capacity was detected: sperm diluted with TCG provided 25.5% 2PN zygotes, while just 13.2% was recorded for that diluted with TCG-CAT (P<0.01). The percentage of cleaved embryos at 48hpi was higher (P<0.01) with the TCG sperm than with the TCG-CAT sperm (16.7% vs. 7.6%). The use of 200IU/mL CAT as an additive cannot, therefore, be recommended for the preservation of ibex epididymal sperm. Other antioxidants should, however, be tested in both this and related wild mountain ungulates. Copyright © 2014 Elsevier Inc. All rights reserved.

The Downwind Hemisphere of the Heliosphere as Observed with IBEX-Lo from 2009 to 2015

NASA Astrophysics Data System (ADS)

Wurz, P.; Galli, A.; Schwadron, N.; Kucharek, H.; Moebius, E.; Bzowski, M.; Sokol, J. M.; Kubiak, M. A.; Funsten, H. O.; Fuselier, S. A.; McComas, D. J.

2017-12-01

The topic of this study is the vast region towards the tail of the heliosphere. To this end, we comprehensively analyzed energetic neutral hydrogen atoms (ENAs) of energies 10 eV to 2.5 keV from the downwind hemisphere of the heliosheath measured during the first 7 years of the IBEX (Interstellar Boundary Explorer) mission. Neutralized ions from the heliosheath (the region of slow solar wind plasma between termination shock and heliopause) can be remotely observed as ENAs down to 10 eV with the IBEX-Lo sensor onboard IBEX. This sensor covers those energies of the ion spectrum that dominate the total plasma pressure in the downwind region. So far, this region of the heliosphere has never been explored in-situ. Converting observations obtained near Earth orbit at these low energies to the original ion distributions in the heliocentric rest frame at 100 AU is very challenging, making the assessment of uncertainties and implicit assumptions crucial. From the maps of observed ENAs from the heliosheath and their uncertainties we derive observational constraints on heliospheric models for the downwind hemisphere. These constraints limit the possible range of 1) the distance of the termination shock, 2) the total plasma pressure across the termination shock, 3) the radial flow velocity of the heliosheath plasma, 4) the extinction length of said plasma, and finally 5) the dimension of the heliosheath in downwind directions. Because these parameters are coupled and because of observational limitations, we also need to characterize the degeneracy, i.e., the fact that different sets of parameters may reproduce the observations.

Flow of neutral interstellar helium into the heliosphere as inferred from IBEX-Lo observations and simulations

NASA Astrophysics Data System (ADS)

Bzowski, M.; Kubiak, M. A.; Hlond, M.; Moebius, E.; Leonard, T.; Heirtzler, D.; Kucharek, H.; Bochsler, P. A.; Schwadron, N. A.; Crew, G. B.; McComas, D. J.; Fuselier, S. A.

2010-12-01

Previously, a team coordinated through the International Space Science Institute (ISSI) examined direct neutral gas, pickup ion, and UV backscatter observations to produce consensus values for the inflow direction (λ, β), speed v, and temperature T of neutral interstellar helium from the Local Interstellar Cloud (LIC) with relatively small uncertainties. Since then, NASA’s Interstellar Boundary Explorer (IBEX) has started to provide new observations of the interstellar He flow in Earth orbit, with data currently available from the spring seasons of 2009 and 2010. Using a test-particle simulation to compute the spin-phase distributions that IBEX observes during each orbit, we optimize input LIC parameters to best fit the observations. The simulations take into account actual ionization rates as derived from solar EUV observations by SOHO CELIAS SEM, the OMNI solar wind data set, the positions and velocity vectors of the Earth during the actual integration intervals for each orbit, and the IBEX-Lo field-of-view. The simulations were performed on a grid of bulk flow vectors and temperatures, starting with the ISSI team consensus values based most heavily on Ulysses GAS observations (v = 26.4 km/s, T = 6318 K, and λ = 255.4o, β = -5.31o in J2000 coordinates). The Mach number of the flow derived from the IBEX observations is generally lower than derived from Ulysses measurements, which would be consistent with a higher temperature (up to 10 000 K) and/or a lower flow speed (down to ≈22.5 km/s) of the LIC. Based on these findings, the possible LIC parameter sets most probably lie within a narrow range between (λ = 255.4°, β = 5.3°, v = 26.4 km/s, M = 4.5 or T = 10,000 K) and (λ = 261.2°, β = 4.9, v = 23.05 km/s, M = 4.9, or T = 6300 K). At one end of the acceptable range, the parameters agree with the previous values except for the temperature, and at the other end, the temperatures agree, but the direction is different by almost 6° and the velocity is

Secondary Interstellar Oxygen in the Heliosphere: Numerical Modeling and Comparison with IBEX-Lo Data

NASA Astrophysics Data System (ADS)

Baliukin, I. I.; Izmodenov, V. V.; Möbius, E.; Alexashov, D. B.; Katushkina, O. A.; Kucharek, H.

2017-12-01

Quantitative analysis of the interstellar heavy (oxygen and neon) atom fluxes obtained by the Interstellar Boundary Explorer (IBEX) suggests the existence of the secondary interstellar oxygen component. This component is formed near the heliopause due to charge exchange of interstellar oxygen ions with hydrogen atoms, as was predicted theoretically. A detailed quantitative analysis of the fluxes of interstellar heavy atoms is only possible with a model that takes into account both the filtration of primary and the production of secondary interstellar oxygen in the boundary region of the heliosphere as well as a detailed simulation of the motion of interstellar atoms inside the heliosphere. This simulation must take into account photoionization, charge exchange with the protons of the solar wind and solar gravitational attraction. This paper presents the results of modeling interstellar oxygen and neon atoms through the heliospheric interface and inside the heliosphere based on a three-dimensional kinetic-MHD model of the solar wind interaction with the local interstellar medium and a comparison of these results with the data obtained on the IBEX spacecraft.

The Statistical Analysis of Global Oxygen ENAs Sky Maps from IBEX-Lo: Implication on the ENA sources

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Moebius, E.; Bochsler, P. A.

2013-12-01

Energetic Neutral Atoms (ENAs) created in the interstellar medium and heliospheric interface have been observed by the Interstellar Boundary Explorer (IBEX) orbiting the Earth on a highly elliptical trajectory since 2008. The science payload on this small spacecraft consists of two highly sensitive single-pixel ENA cameras: the IBEX-Lo sensor covering the energy ranges from 0.01 to 2 keV and the IBEX-Hi sensor covering the energy ranges from 0.3 to 6 keV. In order to measure the incident ENAs, the IBEX-Lo sensor uses a conversion surface to convert neutrals to negative ions. After passing an electrostatic analyzer, they are separated by species (H and heavier species) via a time-of-flight mass spectrometer. All-sky H ENA maps over three years were completed and show two significant features: the interstellar H and He neutral flow is shown at the low energy ranges (0.01 to 0.11 keV) and the ribbon appears at the higher energies (0.21 to 1.35 keV). Like in the hydrogen sky maps, the interstellar O+Ne neutral flow appears in all-sky O ENA maps at the energy ranges from 0.21 to 0.87 keV The distributed heliospheric Oxygen ENAs over the entire energy ranges is determined from very low counting statistics. In this study, we therefore apply the Cash's C statistics (Cash, 1979) and determine the upper and lower confidence limits (Gehrels, 1986) for the statistical significance among all events in all-sky O ENA maps. These newly created sky maps specifically show the distributed heliospheric O ENA flux surrounding the interstellar O+Ne neutral flow. This enhancement distributed ENA flux will provide us new insights into the ion population creation the ENA emission. It seems that there is no signature of ribbon in all-sky O ENA maps. If one assumes that the generation mechanism of the ribbon is the same for hydrogen and oxygen, the location of source ion population may be closer to the heliosheath. In this poster we will discuss all the results of this study and their

Imprint of the Sun’s Evolving Polar Winds on IBEX Energetic Neutral Atom All-sky Observations of the Heliosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; McComas, D. J.; Dayeh, M. A.

2017-09-01

With 7 years of Interstellar Boundary Explorer ( IBEX ) measurements of energetic neutral atoms (ENAs), IBEX has shown a clear correlation between dynamic changes in the solar wind and the heliosphere’s response in the formation of ENAs. In this paper, we investigate temporal variations in the latitudinal-dependent ENA spectrum from IBEX and their relationship to the solar wind speed observed at 1 au. We find that the variation in latitude of the transition in ENA spectral indices between low (≲1.8) and high (≳1.8) values, as well as the distribution of ENA spectral indices at high and low latitudes, correlatesmore » well with the evolution of the fast and slow solar wind latitudinal structure observed near 1 au. This correlation includes a delay due to the time it takes the solar wind to propagate to the termination shock and into the inner heliosheath, and for ENAs to be generated via charge-exchange and travel back toward 1 au. Moreover, we observe a temporal asymmetry in the steepening of the ENA spectrum in the northern and southern hemispheres, consistent with asymmetries observed in the solar wind and polar coronal holes. While this asymmetry is observed near the upwind direction of the heliosphere, it is not yet observed in the tail direction, suggesting a longer line-of-sight integration distance or different processing of the solar wind plasma downstream of the termination shock.« less

SYMMETRY OF THE IBEX RIBBON OF ENHANCED ENERGETIC NEUTRAL ATOM (ENA) FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Funsten, H. O.; Cai, D. M.; Higdon, D. M.

2015-01-20

The circular ribbon of enhanced energetic neutral atom (ENA) emission observed by the Interstellar Boundary Explorer (IBEX) mission remains a critical signature for understanding the interaction between the heliosphere and the interstellar medium. We study the symmetry of the ribbon flux and find strong, spectrally dependent reflection symmetry throughout the energy range 0.7-4.3 keV. The distribution of ENA flux around the ribbon is predominantly unimodal at 0.7 and 1.1 keV, distinctly bimodal at 2.7 and 4.3 keV, and a mixture of both at 1.7 keV. The bimodal flux distribution consists of partially opposing bilateral flux lobes, located at highest and lowest heliographic latitude extentsmore » of the ribbon. The vector between the ribbon center and heliospheric nose (which defines the so-called BV plane) appears to play an organizing role in the spectral dependence of the symmetry axis locations as well as asymmetric contributions to the ribbon flux. The symmetry planes at 2.7 and 4.3 keV, derived by projecting the symmetry axes to a great circle in the sky, are equivalent to tilting the heliographic equatorial plane to the ribbon center, suggesting a global heliospheric ordering. The presence and energy dependence of symmetric unilateral and bilateral flux distributions suggest strong spectral filtration from processes encountered by an ion along its journey from the source plasma to its eventual detection at IBEX.« less

IBEX-Lo Observations of Secondary Interstellar Helium and Oxygen Distributions

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Moebius, E.; Kubiak, M. A.; Bzowski, M.; Galli, A.; McComas, D. J.

2015-12-01

Observations of the Interstellar Boundary EXplorer (IBEX) show, among other features, the pristine interstellar neutral gas flow and additional populations associated with neutral helium and oxygen. Kubiak et al. (2014, ApJS, 213, 29) discovered the "Warm Breeze", or additional He component, which is slower and warmer than the primary interstellar He population and its flow direction differs by about 19° from the interstellar neutral (ISN) flow. Park et al. (2015, ApJS, In Press) studied the combined count rate maps of heavy neutral atoms with three statistical analysis methods and found an extended tail of the ISN O flow, centered around 190° in ecliptic longitude and +15° in ecliptic latitude, or approximately 38° from the ISN O and Ne flow peak. The most likely sources for the Warm Breeze and the extended O tail may be secondary populations of interstellar He and O, created by charge exchange between ISN atoms and interstellar ions in the outer heliosheath. The charge exchange between interstellar He atoms and He+ ions is the most important reaction to generate the secondary neutral He in the outer heliosheath, with a reaction rate of 1.7×10-10 s-1 and a mean free path of ~950 AU. For O+, the charge exchange with interstellar H atoms with a rate ~1.0×10-9 s-1 and a mean free path of ~100 AU is most important. Because the differences in the reaction rates and atomic masses for He and O result in different velocity distributions in the outer heliosheath, the directional distributions of these populations at Earth orbit are not identical. In this study, we use the IBEX flux maps of the observed helium and oxygen atoms to compare their directional distributions. These observed distributions may provide constraints and information to improve our current understanding of the interactions in the outer heliosheath.

SPECTRAL PROPERTIES OF {approx}0.5-6 keV ENERGETIC NEUTRAL ATOMS MEASURED BY THE INTERSTELLAR BOUNDARY EXPLORER (IBEX) ALONG THE LINES OF SIGHT OF VOYAGER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Desai, M. I.; Allegrini, F. A.; Dayeh, M. A.

2012-04-20

Energetic neutral atoms (ENAs) observed by the Interstellar Boundary Explorer (IBEX) provide powerful diagnostics about the origin of the progenitor ion populations and the physical mechanisms responsible for their production. Here we survey the fluxes, energy spectra, and energy dependence of the spectral indices of {approx}0.5-6 keV ENAs measured by IBEX-Hi along the lines of sight of Voyager 1 and 2. We compare the ENA spectra observed at IBEX with predictions of Zank et al. who modeled the microphysics of the heliospheric termination shock to predict the shape and relative contributions of three distinct heliosheath ion populations. We show thatmore » (1) the ENA spectral indices exhibit similar energy dependence along V1 and V2 directions-the spectrum hardens to {gamma} {approx} 1 between {approx}1 and 2 keV and softens to {gamma} {approx} 2 below {approx}1 keV and above {approx}2 keV, (2) the observed ENA fluxes agree to within {approx}50% of the Zank et al. predictions and are unlikely to be produced by core solar wind (SW) ions, and (3) the ENA spectra do not exhibit sharp cutoffs at {approx}twice the SW speed as is typically observed for shell-like pickup ion (PUI) distributions in the heliosphere. We conclude that ENAs at IBEX are generated by at least two types of ion populations whose relative contributions depend on the ENA energy: transmitted PUIs in the {approx}0.5-5 keV energy range and reflected PUIs above {approx}5 keV energy. The {approx}0.5-5 keV PUI distribution is probably a superposition of Maxwellian or kappa distributions and partially filled shell distributions in velocity space.« less

Application of the stage-projection model with density-dependent fecundity to the population dynamics of Spanish ibex

USGS Publications Warehouse

Escos, J.; Alados, C.L.; Emlen, John M.

1994-01-01

A stage-class population model with density-feedback term included was used to identify the most critical parameters determining the population dynamics of female Spanish ibex (Capra pyrenaica) in southern Spain. A population in the Cazorla and Segura mountains is rapidly declining, but the eastern Sierra Nevada population is growing. The stable population density obtained using estimated values of kid and adult survival (0.49 and 0.87, respectively) and with fecundity equal to 0.367 in the absence of density feedback is 12.7 or 16.82 individuals/km2, based on a non-time-lagged and a time-lagged model, respectively. Given the maximum estimate of fecundity and an adult survival rate of 0.87, a kid survival rate of at least 0.41 is required to avoid extinction. At the minimum fecundity estimate, kid survival would have to exceed 0.52. Elasticities were used to estimate the influence of variation in life-cycle parameters on the intrinsic rate of increase. Adult survival is the most critical parameter, while fecundity and juvenile survival are less important. An increase in adult survival from 0.87 to 0.91 in the Cazorla and Segura mountains population would almost stabilize the population in the absence of stochastic variation, while the same increase in the Sierra Nevada population would yield population growth of 4–5% per annum. A reduction in adult survival to 0.83 results in population decline in both cases.

Determining the Dimensions of the Heliosphere from the Time-Correlation of IBEX ENA Observations with Variations in the Solar Wind Dynamic Pressure

NASA Astrophysics Data System (ADS)

Reisenfeld, D. B.; Bzowski, M.; Funsten, H. O.; Janzen, P. H.; Kubiak, M. A.; McComas, D. J.; Schwadron, N.; Sokol, J. M.

2017-12-01

The IBEX mission has shown that variations in the ENA flux from the outer heliosphere are associated with the solar cycle. In particular, there is a good correlation between the dynamic pressure of the outbound solar wind and variations in the observed IBEX ENA flux (McComas et al, 2017; Reisenfeld et al., 2016). There is, of course, a time difference between observations of the outbound SW and the heliospheric ENAs with which they correlate, ranging from approximately two to four years, depending on ENA energy and look direction. In this study, we use this time difference as a means of "sounding" the heliosheath, that is, finding the average distance to the ENA source region in a particular direction. We use data from the first seven years of the IBEX mission. As each point in the sky is sampled once every six months, this gives us a time series of 14 points per look direction on which to time correlate. Fluxes are transformed from the spacecraft frame into a heliospheric inertial frame to remove the effects of spacecraft/Earth motion. Fluxes are also corrected for ENA extinction due to charge exchange. To improve statistics, we divide the sky into "macropixels" spanning 30 degrees in longitude and varying ranges of latitude to maintain comparable counting statistics per pixel. In calculating the response time, we account for the varying speed of the outbound solar wind by using a time and latitude dependent set of solar wind speeds derived from interplanetary scintillation data (Sokol et al. 2015). Consistent with heliospheric models, we determine the shortest distance to the heliopause is in the nose direction, with a flaring toward the flanks and poles.

Sarcoptic mange breaks up bottom-up regulation of body condition in a large herbivore population.

PubMed

Carvalho, João; Granados, José E; López-Olvera, Jorge R; Cano-Manuel, Francisco Javier; Pérez, Jesús M; Fandos, Paulino; Soriguer, Ramón C; Velarde, Roser; Fonseca, Carlos; Ráez, Arian; Espinosa, José; Pettorelli, Nathalie; Serrano, Emmanuel

2015-11-06

Both parasitic load and resource availability can impact individual fitness, yet little is known about the interplay between these parameters in shaping body condition, a key determinant of fitness in wild mammals inhabiting seasonal environments. Using partial least square regressions (PLSR), we explored how temporal variation in climatic conditions, vegetation dynamics and sarcoptic mange (Sarcoptes scabiei) severity impacted body condition of 473 Iberian ibexes (Capra pyrenaica) harvested between 1995 and 2008 in the highly seasonal Alpine ecosystem of Sierra Nevada Natural Space (SNNS), southern Spain. Bottom-up regulation was found to only occur in healthy ibexes; the condition of infected ibexes was independent of primary productivity and snow cover. No link between ibex abundance and ibex body condition could be established when only considering infected individuals. The pernicious effects of mange on Iberian ibexes overcome the benefits of favorable environmental conditions. Even though the increase in primary production exerts a positive effect on the body condition of healthy ibexes, the scabietic individuals do not derive any advantage from increased resource availability. Further applied research coupled with continuous sanitary surveillance are needed to address remaining knowledge gaps associated with the transmission dynamics and management of sarcoptic mange in free-living populations.

Terrestrial energetic neutral atom emissions and the ground-based geomagnetic indices: First daylong observations by IBEX

NASA Astrophysics Data System (ADS)

Ogasawara, K.; Dayeh, M. A.; Fuselier, S. A.; Goldstein, J.; McComas, D. J.; Valek, P. W.

2017-12-01

We report daylong continuous observations of bright terrestrial energetic neutral atom (ENA) emissions in the energy of 0.5-6.0 keV by Interstellar Boundary Explorer (IBEX). The unique vantage point of IBEX, 48 Earth radii (Re) from the dawn/dusk side, made an unprecedented long duration monitoring of ENAs possible from almost stable locations. This type of observation is difficult with the other ENA imager satellites since they are orbiting closer to the Earth in shorter periods. The studied energy range is unique due to the coverage of the transition from the solar wind plasma to the magnetospheric particles with a single sensor. In addition, the Coulomb decay becomes important for the protons with energy less than 1 keV. In order to minimize contamination from the sub-solar magnetosphere or the cusp emissions, we focused on two events when the auroral electrojet (AE) index exceeded 300 nT in this study. We will also show the ENA images from Two Wide-Angle Imaging Neutral-Atom Spectrometers (TWINS) in support of the IBEX observations. We found a significant correlation between the observed ENA profile and the AE indices, whose correlation coefficients were maximized at >0.75 for >1.4 keV energy. There are systematic differences between two events in terms of AU, AL, and Asy-H correlations: One event has the stronger AU correlation than AL and the Asy-H correlation, suggesting partial ring current contribution. The other has the stronger AL correlation than AU without Asy-H correlation, which suggests substorm related ENA emissions. On the contrary, we could not find a meaningful correlation with Sym-H for these two events. The other important finding is the decay time of these ENA emissions. The observed e-folding decay time, 2 to 4 hours for most of the energy bands, was a little shorter than the conventional ring-current decay time (typically >6 hours) expected from the charge exchange and the field-line curvature effect, suggesting the stronger effect of the

EXPLORING THE TIME DISPERSION OF THE IBEX-HI ENERGETIC NEUTRAL ATOM SPECTRA AT THE ECLIPTIC POLES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Allegrini, F.; Dayeh, M. A.; Desai, M. I.

2012-04-20

The Interstellar Boundary Explorer (IBEX) has observed energetic neutral atom (ENA) hydrogen emissions from the edge of the solar system for more than three years. The observations span energies from 0.01 to 6 keV FWHM. At energies greater than 0.5-6 keV, and for a travel distance of {approx}100 AU, the travel time difference between the slowest and the fastest ENA is more than a year. Therefore, we construct spectra including the effect that slower ENAs left the source at an earlier time than faster ones. If the source produces a steady rate of ENAs and the extinction does not vary,more » then we expect that the spectral shape would be time independent. However, while the extinction of ENAs has been fairly constant during the first two and a half years, the source appears to have changed, and thus the spectra at a single time may not represent the conditions at the source. IBEX's viewing allows continuous sampling of the ecliptic poles where fluxes can be continuously monitored. For a given source distance we construct spectra assuming that the measured ENAs left the source at roughly the same time. To accomplish this construction, we apply time lag corrections to the signal at different ENA energies that take into account the travel time difference. We show that the spectral shape at the poles exhibits a statistically significant change with time.« less

Fertilization capacity of cryopreserved Iberian ibex epididymal sperm in a heterologous in vitro fertilization assay.

PubMed

López-Saucedo, J; Santiago-Moreno, J; Fierro, R; Izquierdo, D; Coloma, M A; Catalá, M G; Jiménez, I; Paramio, M T

2015-02-01

In vitro fertilization (IVF) can be used to assess the fertilization capacity of sperm. Heterologous IVF may be useful when assessing that of wild animals as it is often difficult to obtain adequate numbers of naturally corresponding oocytes. The aim of the present study was to assess the fertilization capacity of frozen-thawed ibex epididymal spermatozoa via heterologous IVF involving the oocytes of prepubertal domestic goats. The effect on fertilization and embryo development of adding oestrous sheep serum (ESS) to the fertilization medium was also examined. Cumulus-oocyte complexes (COCs) were matured in TCM-199 for 24-27 h at 38.5°C in a 5% CO2 in air atmosphere. Frozen-thawed epididymal spermatozoa were selected by density gradient centrifugation. After maturation, the oocytes were co-incubated with spermatozoa in synthetic oviductal fluid (SOF) with different concentrations of ESS: SOF-C (0%), SOF-2 (2%) and SOF-20 (20%). At 17 h post-insemination (hpi), zygotes with one female and one male pronucleus (2PN) were categorised as normal; zygotes with 3PN were recorded as polyspermic, and oocytes with 1PN as asynchronous. Cleavage and blastocyst development were assessed at 48 and 168 hpi respectively. The percentage of zygotes with 2PN was higher in the SOF-2 than in the SOF-20 treatment group (27.7% versus 2.9% P < 0.05). The percentage of blastocysts formed with the SOF-C, SOF-2 and SOF-20 treatments were 1.1%, 7.5% and 0% respectively. These results show that the presence of 2% ESS achieves better results than the use of no serum or the standard 20% concentration. Heterologous IVF may be an effective method for predicting the fertilization capacity of ibex spermatozoa, and therefore perhaps that of other wild mountain ungulates.

TRACKING THE SOLAR CYCLE THROUGH IBEX OBSERVATIONS OF ENERGETIC NEUTRAL ATOM FLUX VARIATIONS AT THE HELIOSPHERIC POLES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reisenfeld, D. B.; Janzen, P. H.; Bzowski, M., E-mail: dan.reisenfeld@umontana.edu, E-mail: paul.janzen@umontana.edu, E-mail: bzowski@cbk.waw.pl

With seven years of Interstellar Boundary Explorer ( IBEX ) observations, from 2009 to 2015, we can now trace the time evolution of heliospheric energetic neutral atoms (ENAs) through over half a solar cycle. At the north and south ecliptic poles, the spacecraft attitude allows for continuous coverage of the ENA flux; thus, signal from these regions has much higher statistical accuracy and time resolution than anywhere else in the sky. By comparing the solar wind dynamic pressure measured at 1 au with the heliosheath plasma pressure derived from the observed ENA fluxes, we show that the heliosheath pressure measuredmore » at the poles correlates well with the solar cycle. The analysis requires time-shifting the ENA measurements to account for the travel time out and back from the heliosheath, which allows us to estimate the scale size of the heliosphere in the polar directions. We arrive at an estimated distance to the center of the ENA source region in the north of 220 au and in the south a distance of 190 au. We also find a good correlation between the solar cycle and the ENA energy spectra at the poles. In particular, the ENA flux for the highest IBEX energy channel (4.3 keV) is quite closely correlated with the areas of the polar coronal holes, in both the north and south, consistent with the notion that polar ENAs at this energy originate from pickup ions of the very high speed wind (∼700 km s{sup −1}) that emanates from polar coronal holes.« less

Revival of extinct species using nuclear transfer: hope for the mammoth, true for the Pyrenean ibex, but is it time for "conservation cloning"?

PubMed

Piña-Aguilar, Raul E; Lopez-Saucedo, Janet; Sheffield, Richard; Ruiz-Galaz, Lilia I; Barroso-Padilla, Jose de J; Gutiérrez-Gutiérrez, Antonio

2009-09-01

Recent accomplishments in the fields of nuclear transfer and genomics, such as the cloned offspring production from frozen mouse cells, cryopreserved at not too low temperatures without cryoprotectors; or the sequencing of wooly mammoth genome, have opened the opportunity for the revival of extinct species. As expected, they are receiving a lot of publicity in the media and also scientific attention. Furthermore, it was recently published the "revival" of the first extinct subspecie: the Pyrenean ibex (Capra pyrenaica pyrenaica), a wild goat extinct in 2000. This strengthens the field of cloning as it had been tarnished by induced pluripotent stem cells (iPS) and other methods of reprogramming. However, for biological conservation purposes, cloning is not generally accepted as an alternative for animal conservation, and there is an ongoing debate between reproductive scientists and conservation specialists. Although we believe that nuclear transfer technologies have an opportunity in conservation efforts for some species that are on the brink of extinction and that population status, geographical isolation, reproductive characteristics, and human pressure create a situation that is almost unsustainable. In this article we discuss the barriers in cloning mammoths and cloning controversies in conservation from a zoological perspective, citing the species that might benefit from nuclear transfer techniques in the arduous journey so as not to disappear forever from this, our world.

The Helium Warm Breeze in IBEX Observations As a Result of Charge-exchange Collisions in the Outer Heliosheath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bzowski, Maciej; Kubiak, Marzena A.; Czechowski, Andrzej

2017-08-10

We simulated the signal due to neutral He atoms, observed by the Interstellar Boundary Explorer ( IBEX ), assuming that charge-exchange collisions between neutral He atoms and He{sup +} ions operate everywhere between the heliopause and a distant source region in the local interstellar cloud, where the neutral and charged components are in thermal equilibrium. We simulated several test cases of the plasma flow within the outer heliosheath (OHS) and investigated the signal generation for plasma flows both in the absence and in the presence of the interstellar magnetic field (ISMF). We found that a signal in the portion ofmore » IBEX data identified as being due to the Warm Breeze (WB) does not arise when a homogeneous plasma flow in front of the heliopause is assumed, but it appears immediately when any reasonable disturbance in its flow due to the presence of the heliosphere is assumed. We obtained a good qualitative agreement between the data selected for comparison and the simulations for a model flow with the velocity vector of the unperturbed gas and the direction and intensity of magnetic field adopted from recent determinations. We conclude that direct-sampling observations of neutral He atoms at 1 au from the Sun are a sensitive tool for investigating the flow of interstellar matter in the OHS, that the WB is indeed the secondary population of interstellar helium, which was hypothesized earlier, and that the WB signal is consistent with the heliosphere distorted from axial symmetry by the ISMF.« less

Field evaluation of the efficacy of fenbendazole in captive wild ruminants.

PubMed

Goossens, E; Dorny, P; Vercammen, F; Vercruysse, J

2005-11-05

The efficacy of in-feed fenbendazole at a dose rate of 7.5 mg/kg bodyweight for three consecutive days was assessed in five Arabian oryx (Oryx leucoryx), six scimitar-horned oryx (Oryx dammah), 14 slender-horned gazelles (Gazella leptoceros), eight Soay sheep (Ovis aries aries soay), 13 alpine ibex (Capra ibex ibex), six red deer (Cervus elaphus hippelaphus) and 11 Nelson's elk (Cervus elaphus nelsoni) kept in five herds in a zoo. The efficacy was assessed by means of repeated faecal egg count reduction (fecr) tests and in vitro egg hatch assays. Fenbendazole was highly effective against nematodes in five of the seven species, consistently reducing egg shedding by more than 90 per cent. In the egg hatch assays of the five herds, 50 per cent inhibition of hatching (ld50) was observed at a concentration of thiabendazole below 0.1 microg/ml. In the Arabian oryx and alpine ibex the efficacy of fenbendazole was less than 90 per cent, and the ld50 in the egg hatch assays was between 0.1 and 0.2 microg/ml thiabendazole.

Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non-domesticated Ruminants?

PubMed Central

Ambroset, Chloé; Pau-Roblot, Corinne; Game, Yvette; Gaurivaud, Patrice; Tardy, Florence

2017-01-01

The genus Mycoplasma, a group of free-living, wall-less prokaryotes includes more than 100 species of which dozens are primary pathogens of humans and domesticated animals. Mycoplasma species isolated from wildlife are rarely investigated but could provide a fuller picture of the evolutionary history and diversity of this genus. In 2013 several isolates from wild Caprinae were tentatively assigned to a new species, Mycoplasma (M.) feriruminatoris sp. nov., characterized by an unusually rapid growth in vitro and close genetic proximity to ruminant pathogenic species. We suspected that atypical isolates recently collected from Alpine ibex in France belonged to this new species. The present study was undertaken to verify this hypothesis and to further characterize the French ibex isolates. Phylogenetic analyses were performed to identify the isolates and position them in trees containing several other mycoplasma species pathogenic to domesticated ruminants. Population diversity was characterized by genomic macrorestriction and by examining the capacity of different strains to produce capsular polysaccharides, a feature now known to vary amongst mycoplasma species pathogenic to ruminants. This is the first report of M. feriruminatoris isolation from Alpine ibex in France. Phylogenetic analyses further suggested that M. feriruminatoris might constitute a 4th species in a genetic cluster that so far contains only important ruminant pathogens, the so-called Mycoplasma mycoides cluster. A PCR assay for specific identification is proposed. These French isolates were not clonal, despite being collected in a restricted region of the Alps, which signifies a considerable diversity of the new species. Strains were able to concomitantly produce two types of capsular polysaccharides, β-(1→6)-galactan and β-(1→6)-glucan, with variation in their respective ratio, a feature never before described in mycoplasmas. PMID:28611743

Identification and Characterization of Mycoplasma feriruminatoris sp. nov. Strains Isolated from Alpine Ibex: A 4th Species in the Mycoplasma mycoides Cluster Hosted by Non-domesticated Ruminants?

PubMed

Ambroset, Chloé; Pau-Roblot, Corinne; Game, Yvette; Gaurivaud, Patrice; Tardy, Florence

2017-01-01

The genus Mycoplasma , a group of free-living, wall-less prokaryotes includes more than 100 species of which dozens are primary pathogens of humans and domesticated animals. Mycoplasma species isolated from wildlife are rarely investigated but could provide a fuller picture of the evolutionary history and diversity of this genus. In 2013 several isolates from wild Caprinae were tentatively assigned to a new species, Mycoplasma ( M.) feriruminatoris sp. nov., characterized by an unusually rapid growth in vitro and close genetic proximity to ruminant pathogenic species. We suspected that atypical isolates recently collected from Alpine ibex in France belonged to this new species. The present study was undertaken to verify this hypothesis and to further characterize the French ibex isolates. Phylogenetic analyses were performed to identify the isolates and position them in trees containing several other mycoplasma species pathogenic to domesticated ruminants. Population diversity was characterized by genomic macrorestriction and by examining the capacity of different strains to produce capsular polysaccharides, a feature now known to vary amongst mycoplasma species pathogenic to ruminants. This is the first report of M. feriruminatoris isolation from Alpine ibex in France. Phylogenetic analyses further suggested that M. feriruminatoris might constitute a 4th species in a genetic cluster that so far contains only important ruminant pathogens, the so-called Mycoplasma mycoides cluster. A PCR assay for specific identification is proposed. These French isolates were not clonal, despite being collected in a restricted region of the Alps, which signifies a considerable diversity of the new species. Strains were able to concomitantly produce two types of capsular polysaccharides, β-(1→6)-galactan and β-(1→6)-glucan, with variation in their respective ratio, a feature never before described in mycoplasmas.

THE 2-3 kHz HELIOSPHERIC RADIATION, THE IBEX RIBBON, AND THE THREE-DIMENSIONAL SHAPE OF THE HELIOPAUSE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuselier, Stephen A.; Cairns, Iver H.

2013-07-10

Recent Interstellar Boundary Explorer (IBEX) observations indicate that the total dynamic pressure in the interstellar medium is closely partitioned between the plasma and the magnetic field, with an Alfven Mach number M{sub A} {approx} 1 and a sonic Mach number {approx}2. Observations of the IBEX Ribbon provide a unique determination of the orientation of the undraped interstellar magnetic field along the heliopause. There is also a striking correspondence between the Ribbon location and the source locations of 2-3 kHz radiation determined from Voyager observations: the radiation sources north of the ecliptic form a line parallel to but offset by aboutmore » 30 Degree-Sign from the Ribbon. A general Rankine-Hugoniot analysis is used to argue that the heliopause should not be symmetric about the velocity vector V{sub ISM} of the interstellar medium relative to the Sun (the nominal nose direction). Furthermore, the closest point on the heliopause to the Sun should be on the Ribbon for M{sub A} = 0 and at least 9 Degree-Sign from the nominal nose direction toward the Ribbon for M{sub A} = 1. These new results are combined into a conceptual model of the heliopause that includes (1) a plasma depletion layer formed as the interstellar magnetic field drapes against the heliopause, (2) a minimum inner heliosheath thickness and closest point between the Sun and heliopause along (or close to) the Ribbon rather than in the nominal nose direction (along V{sub ISM}), and (3) inference of an asymmetric heliopause shape from the angular offset of the radio sources and Ribbon and from the Rankine-Hugoniot analysis.« less

Sex-biased severity of sarcoptic mange at the same biological cost in a sexually dimorphic ungulate.

PubMed

López-Olvera, Jorge R; Serrano, Emmanuel; Armenteros, Anna; Pérez, Jesús M; Fandos, Paulino; Carvalho, João; Velarde, Roser; Cano-Manuel, Francisco J; Ráez, Arián; Espinosa, José; Soriguer, Ramón C; Granados, José E

2015-11-10

In sexually dimorphic species, male susceptibility to parasite infection and mortality is frequently higher than in females. The Iberian ibex (Capra pyrenaica) is a sexually dimorphic mountain ungulate endemic to the Iberian Peninsula commonly affected by sarcoptic mange, a chronic catabolic skin disease caused by Sarcoptes scabiei. Since 1992, sarcoptic mange affects the Iberian ibex population of the Sierra Nevada Natural Space (SNNS). This study aims at exploring whether mange severity, in terms of prevalence and its effects on body condition, is male-biased in Iberian ibex. One thousand and seventy-one adult Iberian ibexes (439 females and 632 males) were randomly shot-harvested in the SNNS from May 1995 to February 2008. Sarcoptic mange stage was classified as healthy, mildly infected or severely infected. Sex-biased prevalence of severe mange was evaluated by a Chi-square test whereas the interaction between mange severity and sex on body condition was assessed by additive models. Among scabietic individuals, the prevalence of severely affected males was 1.29 times higher than in females. On the other hand, both sexes were not able to take profit of a higher availability of seasonal food resources when sarcoptic, particularly in the severe stages. Sarcoptic mange severity is male-biased in Iberian ibex, though not mange effects on body condition. Behavioural, immunological and physiological characteristics of males may contribute to this partial sex-biased susceptibility to sarcoptic mange.

Interstellar He Flow Analysis over the Past 9 Years with Observations over the Full IBEX-Lo Energy Range

NASA Astrophysics Data System (ADS)

Moebius, E.; Bower, E.; Bzowski, M.; Fuselier, S. A.; Heirtzler, D.; Kubiak, M. A.; Kucharek, H.; Lee, M. A.; McComas, D. J.; Schwadron, N.; Swaczyna, P.; Sokol, J. M.; Wurz, P.

2017-12-01

The Sun's motion relative to the surrounding interstellar medium leads to an interstellar neutral (ISN) wind through the heliosphere. This wind is moderately depleted by ionization and can be analyzed in-situ with pickup ions and direct neutral atom imaging. Since 2009, observations of the ISN wind at 1 AU with the Interstellar Boundary Explorer (IBEX) have returned a very precise 4-dimensional parameter tube for the flow vector (speed VISN, longitude λISN, and latitude βISN) and temperature TISN of interstellar He in the local cloud, which organizes VISN, βISN, and TISN as a function of λISN, and the local flow Mach number (VThISN/VISN). Typically, the uncertainties along this functional dependence are larger than across it. Here we present important refinements of the determination of this parameter tube by analyzing the spin-integrated ISN flux for its maximum as a function of ecliptic longitude for each year through 2017. In particular, we include a weak energy dependence of the sensor efficiency by comparing the response in all four energy steps that record the ISN He flow. In addition, a recent operational extension of letting the spin axis pointing of IBEX drift to the maximum offset west of the Sun, results in an additional constraint that helps breaking the degeneracy of the ISN parameters along the 4D tube. This constraint is part of the complement of drivers for the determination of all four ISN parameters effective in the full χ2-minimization by comparing the observed count rate distribution with detailed modeling of the ISN flow (e.g. Bzowski et al., 2015, ApJS, 220:28; Schwadron et al., 2015, ApJS, 220:25) and is complementary to the independent determination of λISN using the longitude dependence of the He+ pickup ion cut-off speed with STEREO PLASTIC and ACE SWICS (Möbius et al., 2015, ApJ 815:20).

Molecular characterization of Cryptosporidium from animal sources in Qinghai province of China.

PubMed

Karanis, Panagiotis; Plutzer, Judit; Halim, Norhaliza Abdul; Igori, Khatanbaatar; Nagasawa, Hideyuki; Ongerth, Jerry; Liqing, Ma

2007-11-01

The presence of Cryptosporidium oocysts in 20 zoo animals of the Xining Zoo, 16 farm yaks and 42 farm goats in Qinghai province, China was investigated by an immunofluorescence test (IFT). The species and/or genotypes were determined by nested polymerase chain reaction (PCR) and sequence analysis of a fragment of the small subunit (SSU) rRNA gene. Cryptosporidium oocysts were found in 16 zoo animals, 2 yaks, and 15 goats by IFT. The IFT positive samples were further investigated by PCR, and 16 of them were found to be positive by that method also. Sequence analysis of the PCR products derived from Cryptosporidium oocysts from Black leopard (Panthera pardus), Heijing He (Grus nigricollis), Barbary sheep (Ammotragus lervia), Takin (Budorcas taxicolor), Lesser panda (Ailurus fulgens), and White-eared pheasant (Crossoptilon crossoptilon) fecal samples matched that of Cryptosporidium parvum mouse genotype. Sequence analyses of other PCR products were consistent with cervine genotype Cryptosporidium from Ibex (Capra ibex), a novel Cryptosporidium genotype from a wild yak (Bos mutus), C. bovis-like genotype from one goat sample and also a novel Cryptosporidium genotype from one other separate goat sample. The present work reports the first data on Cryptosporidium infections in animals from the Qinghai province of mountainous central western China and the first findings of the 'cervine' genotype in Capra ibex, C. bovis-like genotype and the new Cryptosporidium spp. in farm goat and in wild yak.

INTERSTELLAR NEUTRAL HELIUM IN THE HELIOSPHERE FROM IBEX OBSERVATIONS. IV. FLOW VECTOR, MACH NUMBER, AND ABUNDANCE OF THE WARM BREEZE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kubiak, Marzena A.; Swaczyna, P.; Bzowski, M.

2016-04-15

Following the high-precision determination of the velocity vector and temperature of the pristine interstellar neutral (ISN) He via a coordinated analysis summarized by McComas et al., we analyzed the Interstellar Boundary Explorer (IBEX) observations of neutral He left out from this analysis. These observations were collected during the ISN observation seasons 2010–2014 and cover the region in the Earth's orbit where the Warm Breeze (WB) persists. We used the same simulation model and a parameter fitting method very similar to that used for the analysis of ISN He. We approximated the parent population of the WB in front of themore » heliosphere with a homogeneous Maxwell–Boltzmann distribution function and found a temperature of ∼9500 K, an inflow speed of 11.3 km s{sup −1}, and an inflow longitude and latitude in the J2000 ecliptic coordinates 251.°6, 12.°0. The abundance of the WB relative to ISN He is 5.7% and the Mach number is 1.97. The newly determined inflow direction of the WB, the inflow directions of ISN H and ISN He, and the direction to the center of the IBEX Ribbon are almost perfectly co-planar, and this plane coincides within relatively narrow statistical uncertainties with the plane fitted only to the inflow directions of ISN He, ISN H, and the WB. This co-planarity lends support to the hypothesis that the WB is the secondary population of ISN He and that the center of the Ribbon coincides with the direction of the local interstellar magnetic field (ISMF). The common plane for the direction of the inflow of ISN gas, ISN H, the WB, and the local ISMF is given by the normal direction: ecliptic longitude 349.°7 ± 0.°6 and latitude 35.°7 ± 0.6 in the J2000 coordinates, with a correlation coefficient of 0.85.« less

Antimicrobial Resistance in Indicator Escherichia coli Isolates from Free-Ranging Livestock and Sympatric Wild Ungulates in a Natural Environment (Northeastern Spain)

PubMed Central

Porrero, M. C.; Mentaberre, G.; Serrano, E.; Mateos, A.; Domínguez, L.; Lavín, S.

2013-01-01

Antimicrobial resistance was assessed in indicator Escherichia coli isolates from free-ranging livestock and sympatric wild boar (Sus scrofa) and Iberian ibex (Capra pyrenaica) in a National Game Reserve in northeastern Spain. The frequency of antimicrobial resistance was low (0% to 7.9%). However, resistance to an extended-spectrum cephalosporin and fluoroquinolones was detected. PMID:23892753

The Role of Pickup Ion Dynamics Outside of the Heliopause in the Limit of Weak Pitch Angle Scattering: Implications for the Source of the IBEX Ribbon.

PubMed

Zirnstein, E J; Heerikhuisen, J; Dayeh, M A

2018-01-01

We present a new model of the Interstellar Boundary Explorer ( IBEX ) ribbon based on the secondary energetic neutral atom (ENA) mechanism, under the assumption that there is negligible pitch angle scattering of pickup ions (PUIs) outside the heliopause. Using the results of an MHD-plasma/kinetic-neutral simulation of the heliosphere, we generate PUIs in the outer heliosheath, solve their transport using guiding center theory, and compute ribbon ENA fluxes at 1 AU. We implement several aspects of the PUI dynamics, including (1) parallel motion along the local interstellar magnetic field (ISMF), (2) advective transport with the interstellar plasma, (3) the mirror force acting on PUIs propagating along the ISMF, and (4) betatron acceleration of PUIs as they are advected within an increasing magnetic field towards the heliopause. We find that ENA fluxes at 1 AU are reduced when PUIs are allowed to move along the ISMF, and ENA fluxes are reduced even more by the inclusion of the mirror force, which pushes particles away from IBEX lines-of-sight. Inclusion of advection and betatron acceleration do not result in any significant change in the ribbon. Interestingly, the mirror force reduces the ENA fluxes from the inner edge of the ribbon more than its outer edge, effectively reducing the ribbon's width by ∼6° and increasing its radius projected on the sky. This is caused by the asymmetric draping of the ISMF around the heliopause, such that ENAs from the ribbon's inner edge originate closer to the heliopause, where the mirror force is strongest.

The Role of Pickup Ion Dynamics Outside of the Heliopause in the Limit of Weak Pitch Angle Scattering: Implications for the Source of the IBEX Ribbon

NASA Astrophysics Data System (ADS)

Zirnstein, E. J.; Heerikhuisen, J.; Dayeh, M. A.

2018-03-01

We present a new model of the Interstellar Boundary Explorer (IBEX) ribbon based on the secondary energetic neutral atom (ENA) mechanism, under the assumption that there is negligible pitch angle scattering of pickup ions (PUIs) outside the heliopause. Using the results of an MHD-plasma/kinetic-neutral simulation of the heliosphere, we generate PUIs in the outer heliosheath, solve their transport using guiding center theory, and compute ribbon ENA fluxes at 1 au. We implement several aspects of the PUI dynamics, including (1) parallel motion along the local interstellar magnetic field (ISMF), (2) advective transport with the interstellar plasma, (3) the mirror force acting on PUIs propagating along the ISMF, and (4) betatron acceleration of PUIs as they are advected within an increasing magnetic field toward the heliopause. We find that ENA fluxes at 1 au are reduced when PUIs are allowed to move along the ISMF, and ENA fluxes are reduced even more by the inclusion of the mirror force, which pushes particles away from IBEX lines of sight. Inclusion of advection and betatron acceleration do not result in any significant change in the ribbon. Interestingly, the mirror force reduces the ENA fluxes from the inner edge of the ribbon more than those from its outer edge, effectively reducing the ribbon’s width by ∼6° and increasing its radius projected on the sky. This is caused by the asymmetric draping of the ISMF around the heliopause, such that ENAs from the ribbon’s inner edge originate closer to the heliopause, where the mirror force is strongest.

Linking seasonal home range size with habitat selection and movement in a mountain ungulate.

PubMed

Viana, Duarte S; Granados, José Enrique; Fandos, Paulino; Pérez, Jesús M; Cano-Manuel, Francisco Javier; Burón, Daniel; Fandos, Guillermo; Aguado, María Ángeles Párraga; Figuerola, Jordi; Soriguer, Ramón C

2018-01-01

Space use by animals is determined by the interplay between movement and the environment, and is thus mediated by habitat selection, biotic interactions and intrinsic factors of moving individuals. These processes ultimately determine home range size, but their relative contributions and dynamic nature remain less explored. We investigated the role of habitat selection, movement unrelated to habitat selection and intrinsic factors related to sex in driving space use and home range size in Iberian ibex, Capra pyrenaica . We used GPS collars to track ibex across the year in two different geographical areas of Sierra Nevada, Spain, and measured habitat variables related to forage and roost availability. By using integrated step selection analysis (iSSA), we show that habitat selection was important to explain space use by ibex. As a consequence, movement was constrained by habitat selection, as observed displacement rate was shorter than expected under null selection. Selection-independent movement, selection strength and resource availability were important drivers of seasonal home range size. Both displacement rate and directional persistence had a positive relationship with home range size while accounting for habitat selection, suggesting that individual characteristics and state may also affect home range size. Ibex living at higher altitudes, where resource availability shows stronger altitudinal gradients across the year, had larger home ranges. Home range size was larger in spring and autumn, when ibex ascend and descend back, and smaller in summer and winter, when resources are more stable. Therefore, home range size decreased with resource availability. Finally, males had larger home ranges than females, which might be explained by differences in body size and reproductive behaviour. Movement, selection strength, resource availability and intrinsic factors related to sex determined home range size of Iberian ibex. Our results highlight the need to integrate

Spectral response characterization of CdTe sensors of different pixel size with the IBEX ASIC

NASA Astrophysics Data System (ADS)

Zambon, P.; Radicci, V.; Trueb, P.; Disch, C.; Rissi, M.; Sakhelashvili, T.; Schneebeli, M.; Broennimann, C.

2018-06-01

We characterized the spectral response of CdTe sensors with different pixel sizes - namely 75, 150 and 300 μm - bonded to the latest generation IBEX single photon counting ASIC developed at DECTRIS, to detect monochromatic X-ray energy in the range 10-60 keV. We present a comparison of pulse height spectra recorded for several energies, showing the dependence on the pixel size of the non-trivial atomic fluorescence and charge sharing effects that affect the detector response. The extracted energy resolution, in terms of full width at half maximum or FWHM, ranges from 1.5 to 4 keV according to the pixel size and chip configuration. We devoted a careful analysis to the Quantum Efficiency and to the Spectral Efficiency - a newly-introduced measure that quantifies the impact of fluorescence and escape phenomena on the spectrum integrity in high- Z material based detectors. We then investigated the influence of the photon flux on the aforementioned quantities up to 180 ṡ 106 cts/s/mm2 and 50 ṡ 106 cts/s/mm2 for the 150 μm and 300 μm pixel case, respectively. Finally, we complemented the experimental data with analytical and with Monte Carlo simulations - taking into account the stochastic nature of atomic fluorescence - with an excellent agreement.

Fractal structures and fractal functions as disease indicators

USGS Publications Warehouse

Escos, J.M; Alados, C.L.; Emlen, J.M.

1995-01-01

Developmental instability is an early indicator of stress, and has been used to monitor the impacts of human disturbance on natural ecosystems. Here we investigate the use of different measures of developmental instability on two species, green peppers (Capsicum annuum), a plant, and Spanish ibex (Capra pyrenaica), an animal. For green peppers we compared the variance in allometric relationship between control plants, and a treatment group infected with the tomato spotted wilt virus. The results show that infected plants have a greater variance about the allometric regression line than the control plants. We also observed a reduction in complexity of branch structure in green pepper with a viral infection. Box-counting fractal dimension of branch architecture declined under stress infection. We also tested the reduction in complexity of behavioral patterns under stress situations in Spanish ibex (Capra pyrenaica). Fractal dimension of head-lift frequency distribution measures predator detection efficiency. This dimension decreased under stressful conditions, such as advanced pregnancy and parasitic infection. Feeding distribution activities reflect food searching efficiency. Power spectral analysis proves to be the most powerful tool for character- izing fractal behavior, revealing a reduction in complexity of time distribution activity under parasitic infection.

Charting the Interstellar Magnetic Field causing the Interstellar Boundary Explorer (IBEX) Ribbon of Energetic Neutral Atoms

NASA Astrophysics Data System (ADS)

Frisch, P. C.; Berdyugin, A.; Piirola, V.; Magalhaes, A. M.; Seriacopi, D. B.; Wiktorowicz, S. J.; Andersson, B.-G.; Funsten, H. O.; McComas, D. J.; Schwadron, N. A.; Slavin, J. D.; Hanson, A. J.; Fu, C.-W.

2015-12-01

The interstellar magnetic field (ISMF) near the heliosphere is a fundamental component of the solar galactic environment that can only be studied using polarized starlight. The results of an ongoing survey of the linear polarizations of local stars are analyzed with the goal of linking the ISMF that shapes the heliosphere to the nearby field in interstellar space. We present new results on the direction of the magnetic field within 40 pc obtained from analyzing polarization data using a merit function that determines the field direction that provides the best fit to the polarization data. Multiple magnetic components are identified, including a dominant interstellar field, {B}{POL}, that is aligned with the direction ℓ, b = 36.°2, 49.°0 (±16.°0). Stars tracing {B}{POL} have the same mean distance as stars that do not trace {B}{POL}, but show weaker average polarizations consistent with a smaller column density of polarizing material. {B}{POL} is aligned with the ISMF traced by the IBEX Ribbon to within {7.6}-7.6+14.9 degrees. The variations in the polarization position angle directions derived from the data that best match {B}{POL} indicate a low level of magnetic turbulence, ˜9° ± 1°. The direction of {B}{POL} is obtained after excluding polarization data tracing a separate magnetic structure that appears to be associated with interstellar dust deflected around the heliosphere. The velocities of local interstellar clouds relative to the Local Standard of Rest (LSR) increase with the angles between the LSR velocities and {B}{POL}, indicating that the kinematics of local interstellar material is ordered by the ISMF. The Loop I superbubble that extends close to the Sun contains dust that reddens starlight and whose distance is determined by the color excess E(B - V) of starlight. Polarizations caused by grains aligned with respect to {B}{POL} are consistent with the location of the Sun in the rim of the Loop I superbubble. An angle of {76

Transport of Helium Pickup Ions within the Focusing Cone: Reconciling STEREO Observations with IBEX

NASA Astrophysics Data System (ADS)

Quinn, P. R.; Schwadron, N. A.; Möbius, E.

2016-06-01

Recent observations of the pickup helium focusing cone by STEREO/Plasma and Suprathermal Ion Composition indicate an inflow longitude of the interstellar wind that differs from the observations of IBEX by 1\\buildrel{\\circ}\\over{.} 8+/- 2\\buildrel{\\circ}\\over{.} 4. It has been under debate whether the transport of helium pickup ions with an anisotropic velocity distribution is the cause of this difference. If so, the roughly field-aligned pickup ion streaming relative to the solar wind should create a shift in the pickup ion density relative to the focusing cone. A large pickup ion streaming depends on the size of the mean free path. Therefore, the observed longitudinal shift in the pickup ion density relative to the neutral focusing cone may carry fundamental information about the mean free path experienced by pickup ions inside 1 au. We test this hypothesis using the Energetic Particle Radiation Environment Module (EPREM) model by simulating the transport of helium pickup ions within the focusing cone finding a mean free path of {λ }\\parallel =0.19+0.29(-0.19) au. We calculate the average azimuthal velocity of pickup ions and find that the anisotropic distribution reaches ˜8% of the solar wind speed. Lastly, we isolate transport effects within EPREM, finding that pitch-angle scattering, adiabatic focusing, perpendicular diffusion, and particle drift contribute to shifting the focusing cone 20.00%, 69.43%, 10.56%, and \\lt 0.01 % , respectively. Thus we show with the EPREM model that the transport of pickup ions does indeed shift the peak of the focusing cone relative to the progenitor neutral atoms and this shift provides fundamental information on the scattering of pickup ions inside 1 au.

KSC-08pd2418

NASA Image and Video Library

2008-08-05

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, the Star-27 kick motor and nozzle for NASA's Interstellar Boundary Explorer, or IBEX, spacecraft are “on top” and part of the IBEX flight system, known as the adapter cone, is in the foreground/bottom. The Star-27 motor has a silver tank that contains the solid propellant. The nozzle fits down inside the adapter cone. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA/R. Bledsoe

KSC-08pd2410

NASA Image and Video Library

2008-07-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, technicians follow the movement of NASA's Interstellar Boundary Explorer, or IBEX, mission spacecraft toward the mobile stand in the foreground. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA

KSC-08pd2409

NASA Image and Video Library

2008-07-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, technicians prepare a mobile stand to receive NASA's Interstellar Boundary Explorer, or IBEX, mission spacecraft. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is the first mission designed to detect the edge of the Solar System. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the Solar System and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the Solar System that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch from the Pegasus XL rocket on Oct. 5. Photo credit: NASA

A novel approach for choosing summary statistics in approximate Bayesian computation.

PubMed

Aeschbacher, Simon; Beaumont, Mark A; Futschik, Andreas

2012-11-01

The choice of summary statistics is a crucial step in approximate Bayesian computation (ABC). Since statistics are often not sufficient, this choice involves a trade-off between loss of information and reduction of dimensionality. The latter may increase the efficiency of ABC. Here, we propose an approach for choosing summary statistics based on boosting, a technique from the machine-learning literature. We consider different types of boosting and compare them to partial least-squares regression as an alternative. To mitigate the lack of sufficiency, we also propose an approach for choosing summary statistics locally, in the putative neighborhood of the true parameter value. We study a demographic model motivated by the reintroduction of Alpine ibex (Capra ibex) into the Swiss Alps. The parameters of interest are the mean and standard deviation across microsatellites of the scaled ancestral mutation rate (θ(anc) = 4N(e)u) and the proportion of males obtaining access to matings per breeding season (ω). By simulation, we assess the properties of the posterior distribution obtained with the various methods. According to our criteria, ABC with summary statistics chosen locally via boosting with the L(2)-loss performs best. Applying that method to the ibex data, we estimate θ(anc)≈ 1.288 and find that most of the variation across loci of the ancestral mutation rate u is between 7.7 × 10(-4) and 3.5 × 10(-3) per locus per generation. The proportion of males with access to matings is estimated as ω≈ 0.21, which is in good agreement with recent independent estimates.

Consequences of snowy winters on male mating strategies and reproduction in a mountain ungulate.

PubMed

Apollonio, Marco; Brivio, Francesca; Rossi, Iva; Bassano, Bruno; Grignolio, Stefano

2013-09-01

Alternative mating tactics (AMTs) are intrasexual variants in mating behaviour of several species ranging from arthropods to mammals. Male AMTs coexist between and within populations. In particular, male ungulates rarely adopt just one tactic throughout their lifetime. Tactics commonly change according to internal factors (age, body size, condition) and external conditions (weather, resources, predation, animal density). However, the influence of weather has not yet been investigated in upper vertebrates. Such influence may be relevant in species whose rutting period occurs late in fall or in winter, when environmental conditions and the snow cover in particular may vary considerably. We detected two AMTs in Alpine ibex (Capra ibex) males: older and full-grown males mainly adopted the tending tactic, while younger males usually pursued an alternative one (coursing tactic). Weather was found to influence the use of AMTs by males: in snowy mating seasons, the coursing tactic was no longer used due to difficulties in moving through deep snow. In snowy rutting periods, males appeared to delay or even avoid mating activities and a decrease of births was reported in the second part of the following birth season. Snow cover may have a negative effect on population dynamics by reducing the recruitment and on population genetic variability, as a consequence of poorer mating opportunities. Studies on factors affecting mating behaviour and leading to a reduced availability of mates and a decrease in female productivity are especially relevant in species, like Alpine ibex, whose genetic variability is low. Copyright © 2013 Elsevier B.V. All rights reserved.

A Novel Approach for Choosing Summary Statistics in Approximate Bayesian Computation

PubMed Central

Aeschbacher, Simon; Beaumont, Mark A.; Futschik, Andreas

2012-01-01

The choice of summary statistics is a crucial step in approximate Bayesian computation (ABC). Since statistics are often not sufficient, this choice involves a trade-off between loss of information and reduction of dimensionality. The latter may increase the efficiency of ABC. Here, we propose an approach for choosing summary statistics based on boosting, a technique from the machine-learning literature. We consider different types of boosting and compare them to partial least-squares regression as an alternative. To mitigate the lack of sufficiency, we also propose an approach for choosing summary statistics locally, in the putative neighborhood of the true parameter value. We study a demographic model motivated by the reintroduction of Alpine ibex (Capra ibex) into the Swiss Alps. The parameters of interest are the mean and standard deviation across microsatellites of the scaled ancestral mutation rate (θanc = 4Neu) and the proportion of males obtaining access to matings per breeding season (ω). By simulation, we assess the properties of the posterior distribution obtained with the various methods. According to our criteria, ABC with summary statistics chosen locally via boosting with the L2-loss performs best. Applying that method to the ibex data, we estimate θ^anc≈1.288 and find that most of the variation across loci of the ancestral mutation rate u is between 7.7 × 10−4 and 3.5 × 10−3 per locus per generation. The proportion of males with access to matings is estimated as ω^≈0.21, which is in good agreement with recent independent estimates. PMID:22960215

KSC-08pd2042

NASA Image and Video Library

2008-07-09

VANDENBERG AIR FORCE BASE, Calif. -- Avionics shelf flatness and fillet gap measurements are conducted on the wing of a Pegasus rocket in Building 1555 at Vandenberg AFB. The testing was performed by workers from Advanced Digital Measuring Works using an API laser tracker. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch in October 2008. Photo credit: NASA/Randy Beaudoin

KSC-08pd2043

NASA Image and Video Library

2008-07-11

VANDENBERG AIR FORCE BASE, Calif. -- Avionics shelf flatness and fillet gap measurements are conducted on the wing of a Pegasus rocket in Building 1555 at Vandenberg AFB. The testing was performed by workers from Advanced Digital Measuring Works using an API laser tracker. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. IBEX is targeted for launch in October 2008. Photo credit: NASA/Randy Beaudoin

Charging of Interstellar Dust Grains in the out-of-equilibrium Heliosheath Plasma traced by IBEX ENAs

NASA Astrophysics Data System (ADS)

Frisch, P. C.; Ogasawara, K.; Livadiotis, G.; Slavin, J. D.; McComas, D. J.; Funsten, H. O.; Schwadron, N.; Heerikhuisen, J.

2017-12-01

Dusty bow waves are common around stars and anticipated around the heliosphere due to the deficit of low-mass interstellar dust grains in the inner heliosphere. Interstellar grains entering the heliosphere must first cross barriers of non-Maxwellian plasma in the heliosheath regions where collisional charging of grains is highly effective. IBEX measures 0.1-6 keV ENAs in the heliosheath plasma, providing an in situ sample of the heliosheath plasma thermodynamics that can be used for grain-charging calculations. Plasma in three-quarters of the sky can be described with a stationary state kappa-distribution, giving predictions for kappa, kappa-distribution temperature, and plasma density [1]. This thermodynamic description allows a more realistic evaluation of the dominant heliosheath electron and ion currents, and hence also grain gyroradii and exclusion from the heliosphere. At the highest temperatures ion collisional currents dominate grain charging; at lower temperatures collisional electron currents are more important together with the photoelectric ejection of electrons. An absence of data on the thermodynamical state of heliosheath electrons has led to the assumption of similar thermodynamic parameters for the electron and ion populations. The balance between electron, proton and photoionization currents on the grains then yield the equilibrium grain charges. Grain gyroradii calculated based on these charging currents differentiate between interstellar grains able to penetrate the heliosphere, versus those that are excluded, and allow predictions of properties of the dusty bow wave likely to be present around the heliosphere. The smallest grains are excluded and grains at the high latitude edges of the described regions tend to have systematically lower grain potentials. Grain charging calculations utilize the modeling of [2]. [1] Livadiotis et al., ApJ 734, 1 (2011). [2] Weingartner Draine, ApJSS 263 (2001)

KSC-08pd1685

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers check the movement of the wing toward the Pegasus XL launch vehicle. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1682

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1677

NASA Image and Video Library

2008-04-28

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, the wings of the Pegasus XL launch vehicle are checked for fit. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1686

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers check the fit of the wing on the Pegasus XL launch vehicle. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1683

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle in the background for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1676

NASA Image and Video Library

2008-04-28

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, the wings of the Pegasus XL launch vehicle are checked for fit. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

KSC-08pd1684

NASA Image and Video Library

2008-04-30

VANDENBERG AIR FORCE BASE, Calif. – In Building 1555, workers help guide a wing toward the Pegasus XL launch vehicle in the background for a fit check. The Pegasus will launch NASA's Interstellar Boundary Explorer Mission, or IBEX, satellite from Kwajalein Island in the Marshall Islands, South Pacific. IBEX will make the first map of the boundary between the solar system and interstellar space. IBEX is the first mission designed to detect the edge of the solar system. As the solar wind from the sun flows out beyond Pluto, it collides with the material between the stars, forming a shock front. IBEX contains two neutral atom imagers designed to detect particles from the termination shock at the boundary between the solar system and interstellar space. IBEX also will study galactic cosmic rays, energetic particles from beyond the solar system that pose a health and safety hazard for humans exploring beyond Earth orbit. IBEX will make these observations from a highly elliptical orbit that takes it beyond the interference of the Earth's magnetosphere. Photo credit: NASA/Randy Beaudoin

THE IBEX RIBBON AND THE PICKUP ION RING STABILITY IN THE OUTER HELIOSHEATH. I. THEORY AND HYBRID SIMULATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Florinski, V.; Heerikhuisen, J.; Niemiec, J.

2016-08-01

The nearly circular band of energetic neutral atom emission dominating the field of view of the Interplanetary Boundary Explorer ( IBEX ) satellite, is most commonly attributed to the effect of charge exchange of secondary pickup ions (PUIs) gyrating about the magnetic field in the outer heliosheath and the interstellar space beyond. Several models for the PUI dynamics of this mechanism have been proposed, each requiring either strong or weak scattering of the initial pitch angle. Conventional wisdom states that ring distributions tend to generate waves and scatter onto a shell on timescales too short for charge exchange to occur.more » We performed a careful study of ring and thin shell proton distribution stability using theoretical tools and hybrid plasma simulations. We show that the kinetic behavior of a freshly injected proton ring is a far more complicated process than previously thought. In the presence of a warm Maxwellian core, narrower rings could be more stable than broader toroidal distributions. The scattered rings possess a fine structure that can only be revealed using very large numbers of macroparticles in a simulation. It is demonstrated that a “stability gap” in ring temperature exists where the protons could retain large gyrating anisotropies for years, and the wave activity could remain below the level of the ambient magnetic fluctuations in interstellar space. In the directions away from the ribbon, however, a partial shell distribution is more likely to be unstable, leading to significant scattering into one hemisphere in velocity space. The process is accompanied by turbulence production, which is puzzling given the very low level of magnetic fluctuations measured in the outer heliosheath by Voyager 1 .« less

KSC-08pd3111

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3109

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3110

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3112

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and mated Pegasus XL rocket are being attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

KSC-08pd3105

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- On the ramp on Vandenberg Air Force Base in California, the Orbital Sciences’ L-1011 aircraft is being prepared to receive the Pegasus XL rocket and NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

Authentication of meat from game and domestic species by SNaPshot minisequencing analysis.

PubMed

La Neve, Fabio; Civera, Tiziana; Mucci, Nadia; Bottero, Maria Teresa

2008-10-01

The aim of the present study is to develop an assay for the specific identification of meat from Capreolus capreolus, Cervus elaphus, Capra ibex, Rupicapra rupicapra, targeting sequences of the cytochrome b (cyt b) gene of mitochondrial DNA. The assay is also intended to enable differentiation between meat from these wild species as well as Ovis aries, Capra hircus, Bubalus bubalis, Bos taurus and Sus scrofa domestic species. The primers used in the preliminary PCR were designed in well conserved regions upstream and downstream of the diagnosis sites. They successfully amplified a conserved 232bp region from the cyt b gene of all the species taken into consideration. The sites of diagnosis have been interrogated using a minisequencing reaction and capillary electrophoresis. All the results of the multiplex PER (primer extension reaction) test were confirmed by fragment sequencing. The assay offers the possibility of discriminating nine species at the same time.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hlond, M.; Bzowski, M.; Moebius, E.

Post-launch boresight of the IBEX-Lo instrument on board the Interstellar Boundary Explorer (IBEX) is determined based on IBEX-Lo Star Sensor observations. Accurate information on the boresight of the neutral gas camera is essential for precise determination of interstellar gas flow parameters. Utilizing spin-phase information from the spacecraft attitude control system (ACS), positions of stars observed by the Star Sensor during two years of IBEX measurements were analyzed and compared with positions obtained from a star catalog. No statistically significant differences were observed beyond those expected from the pre-launch uncertainty in the Star Sensor mounting. Based on the star observations andmore » their positions in the spacecraft reference system, pointing of the IBEX satellite spin axis was determined and compared with the pointing obtained from the ACS. Again, no statistically significant deviations were observed. We conclude that no systematic correction for boresight geometry is needed in the analysis of IBEX-Lo observations to determine neutral interstellar gas flow properties. A stack-up of uncertainties in attitude knowledge shows that the instantaneous IBEX-Lo pointing is determined to within {approx}0.{sup 0}1 in both spin angle and elevation using either the Star Sensor or the ACS. Further, the Star Sensor can be used to independently determine the spacecraft spin axis. Thus, Star Sensor data can be used reliably to correct the spin phase when the Star Tracker (used by the ACS) is disabled by bright objects in its field of view. The Star Sensor can also determine the spin axis during most orbits and thus provides redundancy for the Star Tracker.« less

KSC-08pd3108

NASA Image and Video Library

2008-10-06

VANDENBERG AIR FORCE BASE, Fla. -- A closeup of Orbital Sciences’ Pegasus XL rocket for NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft as it is enroute to the ramp on Vandenberg Air Force Base in California. There, the rocket will be attached to Orbital Sciences’ L-1011 aircraft for launch. IBEX is targeted for launch from the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, on Oct. 19. IBEX will be launched aboard the Pegasus rocket dropped from under the wing of the L-1011 aircraft flying over the Pacific Ocean. The Pegasus will carry the spacecraft approximately 130 miles above Earth and place it in orbit. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. Photo credit: NASA/Mark Mackley, VAFB

Fractal structure of sequential behaviour patterns: an indicator of stress

USGS Publications Warehouse

Alados, C.L.; Escos, J.M; Emlen, J.M.

1996-01-01

The detection of stress arising from parasitic infection bySarcoptes scabieisand from pregnancy is explored, using a fractal analysis of head lifting behaviour and feeding–non-feeding activity sequences in female Spanish ibex,Capra pyrenaica, under natural conditions. Because organisms under stress increase their metabolic rate and, in consequence, energy consumption, it follows that stress will, generally, lead to a reduction in complexity (fractal dimension) of exploratory behaviour. In the present study the fractal dimension of the three measures of complexity used declined with stress, both from pregnancy and from parasitic infection. This observation provides a new and effective way to assess the general state of animals’ health in the field, without the need for capture and handling.

Conservation genetics of managed ungulate populations

USGS Publications Warehouse

Scribner, Kim T.

1993-01-01

Natural populations of many species are increasingly impacted by human activities. Perturbations are particularly pronunced for large ungulates due in part to sport and commercial harvest, to reductions and fragmentation of native habitat, and as the result of reintroductions. These perturbations affect population size, sex and age composition, and population breeding structure, and as a consequence affect the levels and partitioning of genetic variation. Three case histories highlighting long-term ecological genetic research on mule deer Odocoileus hemionus (Rafinesque, 1817), white-tailed deer O. virginianus (Zimmermann, 1780), and Alpine ibex Capra i. ibex Linnaeus, 1758 are presented. Joint examinations of population ecological and genetic data from several populations of each species reveal: (1) that populations are not in genetic equilibrium, but that allele frequencies and heterozygosity change dramatically over time and among cohorts produced in successive years, (2) populations are genetically structured over short and large geographic distances reflecting local breeding structure and patterns of gene flow, respectively; however, this structure is quite dynamic over time, due in part to population exploitation, and (3) restocking programs are often undertaken with small numbers of founding individuals resulting in dramatic declines in levels of genetic variability and increasing levels of genetic differentiation among populations due to genetic drift. Genetic characteristics have and will continue to provide valuable indirect sources of information relating enviromental and human perturbations to changes in population processes.

KSC-08pd3141

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3138

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins rolling for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3148

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins to taxi for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/CIV USAF/Daniel Liberotti

KSC-08pd3145

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3139

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft begins rolling for takeoff from Vandenberg Air Force Base in California to the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3151

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3140

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – Orbital Sciences’ L-1011 aircraft takes off from Vandenberg Air Force Base in California for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean. Under its wing is NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

THE IBEX RIBBON AND THE PICKUP ION RING STABILITY IN THE OUTER HELIOSHEATH. II. MONTE-CARLO AND PARTICLE-IN-CELL MODEL RESULTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Niemiec, J.; Florinski, V.; Heerikhuisen, J.

2016-08-01

The nearly circular ribbon of energetic neutral atom (ENA) emission discovered by NASA’s Interplanetary Boundary EXplorer satellite ( IBEX ), is most commonly attributed to the effect of charge exchange of secondary pickup ions (PUIs) gyrating about the magnetic field in the outer heliosheath (OHS) and the interstellar space beyond. The first paper in the series (Paper I) presented a theoretical analysis of the pickup process in the OHS and hybrid-kinetic simulations, revealing that the kinetic properties of freshly injected proton rings depend sensitively on the details of their velocity distribution. It was demonstrated that only rings that are notmore » too narrow (parallel thermal spread above a few km s{sup −1}) and not too wide (parallel temperature smaller than the core plasma temperature) could remain stable for a period of time long enough to generate ribbon ENAs. This paper investigates the role of electron dynamics and the extra spatial degree of freedom in the ring ion scattering process with the help of two-dimensional full particle-in-cell (PIC) kinetic simulations. A good agreement is observed between ring evolution under unstable conditions in hybrid and PIC models, and the dominant modes are found to propagate parallel to the magnetic field. We also present more realistic ribbon PUI distributions generated using Monte Carlo simulations of atomic hydrogen in the global heliosphere and examine the effect of both the cold ring-like and the hot “halo” PUIs produced from heliosheath ENAs on the ring stability. It is shown that the second PUI population enhances the fluctuation growth rate, leading to faster isotropization of the solar-wind-derived ring ions.« less

The IBEX Ribbon and the Pickup Ion Ring Stability in the Outer Heliosheath II. Monte-Carlo and Particle-in-cell Model Results

NASA Astrophysics Data System (ADS)

Niemiec, J.; Florinski, V.; Heerikhuisen, J.; Nishikawa, K.-I.

2016-08-01

The nearly circular ribbon of energetic neutral atom (ENA) emission discovered by NASA’s Interplanetary Boundary EXplorer satellite (IBEX), is most commonly attributed to the effect of charge exchange of secondary pickup ions (PUIs) gyrating about the magnetic field in the outer heliosheath (OHS) and the interstellar space beyond. The first paper in the series (Paper I) presented a theoretical analysis of the pickup process in the OHS and hybrid-kinetic simulations, revealing that the kinetic properties of freshly injected proton rings depend sensitively on the details of their velocity distribution. It was demonstrated that only rings that are not too narrow (parallel thermal spread above a few km s-1) and not too wide (parallel temperature smaller than the core plasma temperature) could remain stable for a period of time long enough to generate ribbon ENAs. This paper investigates the role of electron dynamics and the extra spatial degree of freedom in the ring ion scattering process with the help of two-dimensional full particle-in-cell (PIC) kinetic simulations. A good agreement is observed between ring evolution under unstable conditions in hybrid and PIC models, and the dominant modes are found to propagate parallel to the magnetic field. We also present more realistic ribbon PUI distributions generated using Monte Carlo simulations of atomic hydrogen in the global heliosphere and examine the effect of both the cold ring-like and the hot “halo” PUIs produced from heliosheath ENAs on the ring stability. It is shown that the second PUI population enhances the fluctuation growth rate, leading to faster isotropization of the solar-wind-derived ring ions.

A versatile telemetry system for continuous measurement of heart rate, body temperature and locomotor activity in free-ranging ruminants

PubMed Central

Signer, Claudio; Ruf, Thomas; Schober, Franz; Fluch, Gerhard; Paumann, Thomas; Arnold, Walter

2012-01-01

Summary 1. Measuring physiological and behavioural parameters in free-ranging animals – and therefore under fully natural conditions – is of general biological concern but difficult to perform. 2. We have developed a minimally invasive telemetry system for ruminants that is capable of measuring heart rate (HR), body temperature (Tb) and locomotor activity (LA). A ruminal transmitter unit was per os placed into the reticulum and therefore located in close proximity to the heart. The unit detected HR by the use of an acceleration sensor and also measured Tb. HR and Tb signals were transmitted via short-distance UHF link to a repeater system located in a collar unit. The collar unit decoded and processed signals received from the ruminal unit, measured LA with two different activity sensors and transmitted pulse interval-modulated VHF signals over distances of up to 10 km. 3. HR data measured with the new device contained noise caused by reticulum contractions and animal movements that triggered the acceleration sensor in the ruminal unit. We have developed a software filter to remove this noise. Hence, the system was only capable of measuring HR in animals that showed little or no activity and in the absence of rumen contractions. Reliability of this ‘stationary HR’ measurement was confirmed with a second independent measurement of HR detected by an electrocardiogram in a domestic sheep (Ovis aries). 4. In addition, we developed an algorithm to correctly classify an animal as ‘active’ or ‘at rest’ during each 3-min interval from the output of the activity sensors. Comparison with direct behavioural observations on free-ranging Alpine ibex (Capra ibex) showed that 87% of intervals were classified correctly. 5. First results from applications of this new technique in free-ranging Alpine ibex underlined its suitability for reliable and long-term monitoring of physiological and behavioural parameters in ruminants under harsh field conditions. With the

KSC-08pd3134

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – On the ramp of Vandenberg Air Force Base in California, Orbital Sciences’ L-1011 aircraft awaits departure for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, with NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. The Pegasus is attached under the wing of the aircraft for launch. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3136

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – On the ramp of Vandenberg Air Force Base in California, Orbital Sciences’ L-1011 aircraft awaits departure for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, with NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. The Pegasus is attached under the wing of the aircraft for launch. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/Randy Beaudoin, VAFB

KSC-08pd3142

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – On the ramp of Vandenberg Air Force Base in California, Orbital Sciences’ L-1011 aircraft awaits departure for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, with NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. The Pegasus is attached under the wing of the aircraft for launch. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/CIV USAF/Daniel Liberotti

KSC-08pd3146

NASA Image and Video Library

2008-10-11

VANDENBERG AIR FORCE BASE, Calif. – On the ramp of Vandenberg Air Force Base in California, Orbital Sciences’ L-1011 aircraft awaits departure for the Kwajalein Atoll, a part of the Marshall Islands in the Pacific Ocean, with NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. The Pegasus is attached under the wing of the aircraft for launch. Departing from Kwajalein, the Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Then, the spacecraft’s own engine will boost it to its final high-altitude orbit (about 200,000 miles high) — most of the way to the Moon. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX science will be led by the Southwest Research Institute of San Antonio, Texas. IBEX is targeted for launch over the Pacific Oct. 19. Photo credit: NASA/CIV USAF/Daniel Liberotti

Prey preferences of the snow leopard (Panthera uncia): regional diet specificity holds global significance for conservation.

PubMed

Lyngdoh, Salvador; Shrotriya, Shivam; Goyal, Surendra P; Clements, Hayley; Hayward, Matthew W; Habib, Bilal

2014-01-01

The endangered snow leopard is a large felid that is distributed over 1.83 million km(2) globally. Throughout its range it relies on a limited number of prey species in some of the most inhospitable landscapes on the planet where high rates of human persecution exist for both predator and prey. We reviewed 14 published and 11 unpublished studies pertaining to snow leopard diet throughout its range. We calculated prey consumption in terms of frequency of occurrence and biomass consumed based on 1696 analysed scats from throughout the snow leopard's range. Prey biomass consumed was calculated based on the Ackerman's linear correction factor. We identified four distinct physiographic and snow leopard prey type zones, using cluster analysis that had unique prey assemblages and had key prey characteristics which supported snow leopard occurrence there. Levin's index showed the snow leopard had a specialized dietary niche breadth. The main prey of the snow leopard were Siberian ibex (Capra sibrica), blue sheep (Pseudois nayaur), Himalayan tahr (Hemitragus jemlahicus), argali (Ovis ammon) and marmots (Marmota spp). The significantly preferred prey species of snow leopard weighed 55±5 kg, while the preferred prey weight range of snow leopard was 36-76 kg with a significant preference for Siberian ibex and blue sheep. Our meta-analysis identified critical dietary resources for snow leopards throughout their distribution and illustrates the importance of understanding regional variation in species ecology; particularly prey species that have global implications for conservation.

Prey Preferences of the Snow Leopard (Panthera uncia): Regional Diet Specificity Holds Global Significance for Conservation

PubMed Central

Lyngdoh, Salvador; Shrotriya, Shivam; Goyal, Surendra P.; Clements, Hayley; Hayward, Matthew W.; Habib, Bilal

2014-01-01

The endangered snow leopard is a large felid that is distributed over 1.83 million km2 globally. Throughout its range it relies on a limited number of prey species in some of the most inhospitable landscapes on the planet where high rates of human persecution exist for both predator and prey. We reviewed 14 published and 11 unpublished studies pertaining to snow leopard diet throughout its range. We calculated prey consumption in terms of frequency of occurrence and biomass consumed based on 1696 analysed scats from throughout the snow leopard's range. Prey biomass consumed was calculated based on the Ackerman's linear correction factor. We identified four distinct physiographic and snow leopard prey type zones, using cluster analysis that had unique prey assemblages and had key prey characteristics which supported snow leopard occurrence there. Levin's index showed the snow leopard had a specialized dietary niche breadth. The main prey of the snow leopard were Siberian ibex (Capra sibrica), blue sheep (Pseudois nayaur), Himalayan tahr (Hemitragus jemlahicus), argali (Ovis ammon) and marmots (Marmota spp). The significantly preferred prey species of snow leopard weighed 55±5 kg, while the preferred prey weight range of snow leopard was 36–76 kg with a significant preference for Siberian ibex and blue sheep. Our meta-analysis identified critical dietary resources for snow leopards throughout their distribution and illustrates the importance of understanding regional variation in species ecology; particularly prey species that have global implications for conservation. PMID:24533080

La grande faune associée aux derniers Néandertaliens de Zafarraya (Andalousie, Espagne) : systèmatique et essai d'interprétation

NASA Astrophysics Data System (ADS)

Geraads, Denis

1997-11-01

The large Mammal fauna associated with the late Neanderthals of Zafarraya is rather peculiar. The ibex largely predominates over other ungulates, among which we may notice E. hydruntinus, rare in Spain, and the chamois, not previously reported from such a southern latitude. Among carnivores, of which the panther is the most common species, the cave hear, and more surprisingly the wolf, replaced by the dhole, are both missing. Both sexes and all age classes are present in the ibex assemblage. The analysis of the spatial distribution of ibex and carnivore anatomical elements show that human involvement in bone accumulation was greater around 32 000 BP, but the role of carnivores increased afterwards, around 30 000 BP. The cave may have been used as a temporary hunting camp.

Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode

PubMed Central

Tardy, Florence; Baranowski, Eric; Nouvel, Laurent-Xavier; Mick, Virginie; Manso-Silvàn, Lucía; Thiaucourt, François; Thébault, Patricia; Breton, Marc; Sirand-Pugnet, Pascal; Blanchard, Alain; Garnier, Alexandre; Gibert, Philippe; Game, Yvette; Poumarat, François

2012-01-01

The bacterium Mycoplasma agalactiae is responsible for contagious agalactia (CA) in small domestic ruminants, a syndrome listed by the World Organization for Animal Health and responsible for severe damage to the dairy industry. Recently, we frequently isolated this pathogen from lung lesions of ibexes during a mortality episode in the French Alps. This situation was unusual in terms of host specificity and tissue tropism, raising the question of M. agalactiae emergence in wildlife. To address this issue, the ibex isolates were characterized using a combination of approaches that included antigenic profiles, molecular typing, optical mapping, and whole-genome sequencing. Genome analyses showed the presence of a new, large prophage containing 35 coding sequences (CDS) that was detected in most but not all ibex strains and has a homolog in Mycoplasma conjunctivae, a species causing keratoconjunctivitis in wild ungulates. This and the presence in all strains of large integrated conjugative elements suggested highly dynamic genomes. Nevertheless, M. agalactiae strains circulating in the ibex population were shown to be highly related, most likely originating from a single parental clone that has also spread to another wild ungulate species of the same geographical area, the chamois. These strains clearly differ from strains described in Europe so far, including those found nearby, before CA eradication a few years ago. While M. agalactiae pathogenicity in ibexes remains unclear, our data showed the emergence of atypical strains in Alpine wild ungulates, raising the question of a role for the wild fauna as a potential reservoir of pathogenic mycoplasmas. PMID:22522685

Reading Strategy Guides to Assist Middle School Educators of Students with Dyslexia

NASA Astrophysics Data System (ADS)

Nichols-Yehling, M.; Strohl, C.

2014-07-01

According to the 2010 International Dyslexia Association publication, “Knowledge and Practice Standards for Teachers of Reading,” effective instruction is the key to addressing students' reading difficulties associated with dyslexia, a language-based disorder of learning to read and write. “Informed and effective classroom instruction. . . can prevent or at least effectively address and limit the severity of reading and writing problems.” The Interstellar Boundary Explorer (IBEX) mission Education and Public Outreach program recently funded the development of six strategy guides for teachers of middle school students with reading difficulties, especially dyslexia. These guides utilize space science-themed reading materials developed by the Great Exploration in Math and Science (GEMS), including the IBEX-funded GEMS Space Science Sequence (Grades 6-8). The aforementioned reading strategy guides are now available on the IBEX mission website.

KSC-08pd3078

NASA Image and Video Library

2008-10-08

VANDENBERG AIR FORCE BASE, Calif. – On the ramp of Vandenberg Air Force Base in California, a Boeing 737 aircraft waits to accompany Orbital Sciences’ L-1011 aircraft when it takes off with NASA’s Interstellar Boundary Explorer, or IBEX, spacecraft and Pegasus XL rocket. The L-1011 will head for the Reagan Test Site at Kwajalein Atoll in the South Pacific. The 737 will fly ahead of the L-1011 as a pathfinder. Launch vehicle engineers are aboard in the unlikely event their expertise is needed. The IBEX satellite will make the first map of the boundary between the Solar System and interstellar space. IBEX is targeted for launch Oct. 19. The Pegasus rocket will be dropped from under the wing of the L-1011 over the Pacific Ocean to carry the spacecraft approximately 130 miles above Earth and place it in orbit. Photo credit: NASA/Randy Beaudoin, VAFB

A Ulysses Detection of Secondary Helium Neutrals

NASA Astrophysics Data System (ADS)

Wood, Brian E.; Müller, Hans-Reinhard; Witte, Manfred

2017-12-01

The Interstellar Boundary EXplorer (IBEX) mission has recently studied the flow of interstellar neutral He atoms through the solar system and discovered the existence of a secondary He flow that likely originates in the outer heliosheath. We find evidence for this secondary component in Ulysses data. By coadding hundreds of Ulysses He beam maps together to maximize signal-to-noise ratio, we identify a weak signal that is credibly associated with the secondary component. Assuming a laminar flow from infinity, we infer the following He flow parameters: V=12.8+/- 1.9 km s-1, λ =74\\buildrel{\\circ}\\over{.} 4+/- 1\\buildrel{\\circ}\\over{.} 8, β =-10\\buildrel{\\circ}\\over{.} 5+/- 4\\buildrel{\\circ}\\over{.} 1, and T=3000+/- 1100 K; where λ and β are the ecliptic longitude and latitude direction in J2000 coordinates. The secondary component has a density that is 4.9 ± 0.9% that of the primary component. These measurements are reasonably consistent with measurements from IBEX, with the exception of temperature, where our temperature is much lower than IBEX’s T = 9500 K. Even the higher IBEX temperature is suspiciously low compared to expectactions for the outer heliosheath source region. The implausibly low temperatures are due to the incorrect assumption of a laminar flow instead of a diverging one, given that the flow in the outer heliosheath source region will be deflecting around the heliopause. As for why the IBEX and Ulysses T values are different, difficulties with background subtraction in the Ulysses data are a potential source of concern, but the discrepancy may also be another effect of the improper laminar flow assumption, which could affect the IBEX and Ulysses analyses differently.

Prevalence of Toxoplasma gondii and Neosport caninum antibodies in Spanish ibex (Capra pryenaica hispanica)

USDA-ARS?s Scientific Manuscript database

Wild felids are considered important in maintaining the sylvatic cycle of Toxoplasma gondii. Although, T. gondii antibodies have been reported in several species of wild felids, little is known of the epidemiology and risk factors associated with T. gondii infection in wild cats. The Iberian lynx (L...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sokół, J. M.; Kubiak, M. A.; Bzowski, M.

We have developed a refined and optimized version of the Warsaw Test Particle Model of interstellar neutral gas in the heliosphere, specially tailored for analysis of IBEX-Lo observations. The former version of the model was used in the analysis of neutral He observed by IBEX that resulted in an unexpected conclusion that the interstellar neutral He flow vector was different than previously thought and that a new population of neutral He, dubbed the Warm Breeze, exists in the heliosphere. It was also used in the reanalysis of Ulysses observations that confirmed the original findings on the flow vector, but suggestedmore » a significantly higher temperature. The present version of the model has two strains targeted for different applications, based on an identical paradigm, but differing in the implementation and in the treatment of ionization losses. We present the model in detail and discuss numerous effects related to the measurement process that potentially modify the resulting flux of ISN He observed by IBEX, and identify those of them that should not be omitted in the simulations to avoid biasing the results. This paper is part of a coordinated series of papers presenting the current state of analysis of IBEX-Lo observations of ISN He. Details of the analysis method are presented by Swaczyna et al. and results of the analysis are presented by Bzowski et al.« less

External validation of the CAPRA-S score to predict biochemical recurrence, metastasis and mortality after radical prostatectomy in a European cohort.

PubMed

Tilki, Derya; Mandel, Philipp; Schlomm, Thorsten; Chun, Felix K-H; Tennstedt, Pierre; Pehrke, Dirk; Haese, Alexander; Huland, Hartwig; Graefen, Markus; Salomon, Georg

2015-06-01

The CAPRA-S score predicts prostate cancer recurrence based on pathological information from radical prostatectomy. To our knowledge CAPRA-S has never been externally validated in a European cohort. We independently validated CAPRA-S in a single institution European database. The study cohort comprised 14,532 patients treated with radical prostatectomy between January 1992 and August 2012. Prediction of biochemical recurrence, metastasis and cancer specific mortality by CAPRA-S was assessed by Kaplan-Meier analysis and the c-index. CAPRA-S performance to predict biochemical recurrence was evaluated by calibration plot and decision curve analysis. Median followup was 50.8 months (IQR 25.0-96.0). Biochemical recurrence developed in 20.3% of men at a median of 21.2 months (IQR 7.7-44.9). When stratifying patients by CAPRA-S risk group, estimated 5-year biochemical recurrence-free survival was 91.4%, 70.4% and 29.3% in the low, intermediate and high risk groups, respectively. The CAPRA-S c-index to predict biochemical recurrence, metastasis and cancer specific mortality was 0.80, 0.85 and 0.88, respectively. Metastasis developed in 417 men and 196 men died of prostate cancer. The CAPRA-S score was accurate when applied in a European study cohort. It predicted biochemical recurrence, metastasis and cancer specific mortality after radical prostatectomy with a c-index of greater than 0.80. The score can be valuable in regard to decision making for adjuvant therapy. Copyright © 2015. Published by Elsevier Inc.

Probing the Boundaries of the Heliosphere by Analyzing the Temporal Variation of the Polar ENA Flux

NASA Astrophysics Data System (ADS)

Reisenfeld, D. B.; Janzen, P. H.; Bzowski, M.; Dialynas, K.; Funsten, H. O.; Fuselier, S. A.; Karna, N.; Kubiak, M. A.; McComas, D. J.; Schwadron, N.; Sokol, J. M.

2015-12-01

With nearly seven years of IBEX observations, we can now trace the time evolution of heliospheric ENAs through over half a solar cycle. At the north and south ecliptic poles, the spacecraft attitude allows for continuous coverage of the ENA flux; thus, signal from these vantages have much higher statistical accuracy and time resolution than anywhere else in the sky. By assuming pressure balance across the termination shock, and comparing the solar wind dynamic pressure measured at 1 AU with the heliosheath plasma pressure derived from the observed ENA fluxes, we show that the heliosheath pressure measured at the poles correlates well with the solar cycle. The analysis requires time-shifting the ENA measurements to account for the travel time out and back from the heliosheath. The time shifts at the north pole range from 5.1 years at 700 eV, the low end of the IBEX-Hi energy range, to 3.2 years at 4.3 keV, the top IBEX-Hi energy. These time shifts assume a common mean distance to the ENA source region for all energies. For the south pole, the best-fit time shifts range from 4.1 to 2.6 years across the IBEX-Hi energy range. Hence, the ENA source at the south is somewhat closer than at the north, consistent with an asymmetric heliosphere model. We will present the details of this analysis, as well as estimates of the scale size of the heliosheath in the polar directions.

3D simulation of LISM oxygen flux with PUIs inside of heliosphere

DOE PAGES

Kawamura, Akito D.; Heerikhuisen, Jacob; Pogorelov, Nikolai V.; ...

2012-11-20

The structure of the heliospheric interface has attracted increasing attention with continual improvements in modelling and observations, during the last half decade. The Interstellar Boundary Explore (IBEX) spacecraft is returning important data that require a theoretical model of Heliosphere to ensure proper interpretation. Furthermore, we develop a framework for understanding the measurements of heavier-than-hydrogen atoms by IBEX in terms of a 3D MHD-neutral numerical solution of the sun's interaction with the interstellar medium, combined with a test particle approach for heavy atoms and ions.

Warm Breeze due to Charge Exchange Collisions Between Neutral He Atoms and He+ Ions in the Outer Heliosheath.

NASA Astrophysics Data System (ADS)

Kubiak, M. A.; Bzowski, M.; Czechowski, A.; Grygorczuk, J.

2017-12-01

We simulated the signal due to neutral He atoms, observed by Interstellar Boundary Explorer (IBEX), assuming that charge exchange collisions between neutral He atoms and He+ ions operate everywhere between the heliopause and a distant source region in the local interstellar cloud (LIC). We chose the limiting distance of calculations at 5000 AU, where the neutral and charged components are in thermal equilibrium. From that distance we integrated the signal for test particles that we know they reach the IBEX detector, calculating for each particle the balance of losses and gains in the LIC, the ionization losses inside the HP, and the distribution function at 5000 AU. The resulting statistical weights were integrated over speed, inflow direction, collimator transmission, observation times, and IBEX spin angle bins to simulate the count rate actually observed by IBEX. We simulated several test cases of the plasma flow within the outer heliosheath and investigated the signal generation for plasma flows both in the presence and in the absence of the interstellar magnetic field. We found that a signal in the portion of IBEX data identified as due to the Warm Breeze does not arise when a homogeneous plasma flow in front of the heliopause is assumed. However, it appears immediately when any reasonable disturbance in the plasma flow due to the presence of the heliosphere is assumed. We obtained a good qualitative agreement between the data and the simulations for a model flow with the velocity vector of the unperturbed gas and the direction and intensity of magnetic field adopted from recent determinations. We conclude that direct-sampling observations of neutral He atoms at 1 AU from the Sun are a sensitive tool for investigating the flow of interstellar matter in the outer heliosheath; the Warm Breeze is indeed the secondary population of interstellar helium, as it was hypothesized earlier; the WB signal is consistent with that predicted by comet-like models of the

Simulations of a dynamic solar cycle and its effects on the interstellar boundary explorer ribbon and globally distributed energetic neutral atom flux

DOE PAGES

Zirnstein, E. J.; Heerikhuisen, J.; Pogorelov, N. V.; ...

2015-04-23

Observations by the Interstellar Boundary Explorer (IBEX) have vastly improved our understanding of the interaction between the solar wind (SW) and local interstellar medium through direct measurements of energetic neutral atoms (ENAs); this informs us about the heliospheric conditions that produced them. An enhanced feature of flux in the sky, the so-called IBEX ribbon, was not predicted by any global models before the first IBEX observations. A dominating theory of the origin of the ribbon, although still under debate, is a secondary charge-exchange process involving secondary ENAs originating from outside the heliopause. According to this mechanism, the evolution of themore » solar cycle should be visible in the ribbon flux. Therefore, in this paper we simulate a fully time-dependent ribbon flux, as well as globally distributed flux from the inner heliosheath (IHS), using time-dependent SW parameters from Sokol et al. as boundary conditions for our time-dependent heliosphere simulation. After post-processing the results to compute H ENA fluxes, these results show that the secondary ENA ribbon indeed should be time dependent, evolving with a period of approximately 11 yr, with differences depending on the energy and direction. Our results for the IHS flux show little periodic change with the 11 yr solar cycle, but rather with short-term fluctuations in the background plasma. And, while the secondary ENA mechanism appears to emulate several key characteristics of the observed IBEX ribbon, it appears that our simulation does not yet include all of the relevant physics that produces the observed ribbon.« less

SIMULATIONS OF A DYNAMIC SOLAR CYCLE AND ITS EFFECTS ON THE INTERSTELLAR BOUNDARY EXPLORER RIBBON AND GLOBALLY DISTRIBUTED ENERGETIC NEUTRAL ATOM FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; Heerikhuisen, J.; Pogorelov, N. V.

2015-05-01

Since 2009, observations by the Interstellar Boundary Explorer (IBEX) have vastly improved our understanding of the interaction between the solar wind (SW) and local interstellar medium through direct measurements of energetic neutral atoms (ENAs), which inform us about the heliospheric conditions that produced them. An enhanced feature of flux in the sky, the so-called IBEX ribbon, was not predicted by any global models before the first IBEX observations. A dominating theory of the origin of the ribbon, although still under debate, is a secondary charge-exchange process involving secondary ENAs originating from outside the heliopause. According to this mechanism, the evolutionmore » of the solar cycle should be visible in the ribbon flux. Therefore, in this paper we simulate a fully time-dependent ribbon flux, as well as globally distributed flux from the inner heliosheath (IHS), using time-dependent SW parameters from Sokół et al. as boundary conditions for our time-dependent heliosphere simulation. After post-processing the results to compute H ENA fluxes, our results show that the secondary ENA ribbon indeed should be time dependent, evolving with a period of approximately 11 yr, with differences depending on the energy and direction. Our results for the IHS flux show little periodic change with the 11 yr solar cycle, but rather with short-term fluctuations in the background plasma. While the secondary ENA mechanism appears to emulate several key characteristics of the observed IBEX ribbon, it appears that our simulation does not yet include all of the relevant physics that produces the observed ribbon.« less

Objective Lightning Probability Forecasting for Kennedy Space Center and Cape Canaveral Air Force Station, Phase IV

NASA Technical Reports Server (NTRS)

Bauman, William H., III; Crawford, Winifred C.

2012-01-01

As with the previous year, the past year of this award has been productive and a number of important results and refereed publications either submitted or published. Some of our research results are discussed here and a list the papers submitted or published in the past year is provided. Besides our original model of an outer heliosheath source for the IBEX "ribbon" we have continued to explore alternative possibilities and further our understanding of this very complex region, especially in light of the possibility raised by the IBEX results that suggest the possibility of a 1-shock model.

Convergent genomic signatures of domestication in sheep and goats.

PubMed

Alberto, Florian J; Boyer, Frédéric; Orozco-terWengel, Pablo; Streeter, Ian; Servin, Bertrand; de Villemereuil, Pierre; Benjelloun, Badr; Librado, Pablo; Biscarini, Filippo; Colli, Licia; Barbato, Mario; Zamani, Wahid; Alberti, Adriana; Engelen, Stefan; Stella, Alessandra; Joost, Stéphane; Ajmone-Marsan, Paolo; Negrini, Riccardo; Orlando, Ludovic; Rezaei, Hamid Reza; Naderi, Saeid; Clarke, Laura; Flicek, Paul; Wincker, Patrick; Coissac, Eric; Kijas, James; Tosser-Klopp, Gwenola; Chikhi, Abdelkader; Bruford, Michael W; Taberlet, Pierre; Pompanon, François

2018-03-06

The evolutionary basis of domestication has been a longstanding question and its genetic architecture is becoming more tractable as more domestic species become genome-enabled. Before becoming established worldwide, sheep and goats were domesticated in the fertile crescent 10,500 years before present (YBP) where their wild relatives remain. Here we sequence the genomes of wild Asiatic mouflon and Bezoar ibex in the sheep and goat domestication center and compare their genomes with that of domestics from local, traditional, and improved breeds. Among the genomic regions carrying selective sweeps differentiating domestic breeds from wild populations, which are associated among others to genes involved in nervous system, immunity and productivity traits, 20 are common to Capra and Ovis. The patterns of selection vary between species, suggesting that while common targets of selection related to domestication and improvement exist, different solutions have arisen to achieve similar phenotypic end-points within these closely related livestock species.

Interstellar Mapping and Acceleration Probe (IMAP)

NASA Astrophysics Data System (ADS)

Schwadron, N. A.; Opher, M.; Kasper, J.; Mewaldt, R.; Moebius, E.; Spence, H. E.; Zurbuchen, T. H.

2016-11-01

Our piece of cosmic real estate, the heliosphere, is the domain of all human existence - an astrophysical case history of the successful evolution of life in a habitable system. By exploring our global heliosphere and its myriad interactions, we develop key physical knowledge of the interstellar interactions that influence exoplanetary habitability as well as the distant history and destiny of our solar system and world. IBEX is the first mission to explore the global heliosphere and in concert with Voyager 1 and Voyager 2 is discovering a fundamentally new and uncharted physical domain of the outer heliosphere. In parallel, Cassini/INCA maps the global heliosphere at energies (˜5-55 keV) above those measured by IBEX. The enigmatic IBEX ribbon and the INCA belt were unanticipated discoveries demonstrating that much of what we know or think we understand about the outer heliosphere needs to be revised. This paper summarizes the next quantum leap enabled by IMAP that will open new windows on the frontier of Heliophysics at a time when the space environment is rapidly evolving. IMAP with 100 times the combined resolution and sensitivity of IBEX and INCA will discover the substructure of the IBEX ribbon and will reveal, with unprecedented resolution, global maps of our heliosphere. The remarkable synergy between IMAP, Voyager 1 and Voyager 2 will remain for at least the next decade as Voyager 1 pushes further into the interstellar domain and Voyager 2 moves through the heliosheath. Voyager 2 moves outward in the same region of sky covered by a portion of the IBEX ribbon. Voyager 2’s plasma measurements will create singular opportunities for discovery in the context of IMAP's global measurements. IMAP, like ACE before, will be a keystone of the Heliophysics System Observatory by providing comprehensive measurements of interstellar neutral atoms and pickup ions, the solar wind distribution, composition, and magnetic field, as well as suprathermal ion, energetic

Sarcoptes scabiei infestation does not alter the stability of ectoparasite communities.

PubMed

Carvalho, João; Serrano, Emmanuel; Pettorelli, Nathalie; Granados, José E; Habela, Miguel A; Olmeda, Sonia; Fonseca, Carlos; Pérez, Jesús M

2016-07-01

The host represents a heterogeneous ecosystem where multiple parasite species co-occur and interact with each other for space and resources. Although these interactions may rule the features of an infracommunity and may shape the infracommunity response to external perturbations, the resilience of ectoparasite communities to new infestations remains poorly explored. We analysed the composition of the ectoparasite communities found on 214 individual Iberian ibexes (Capra pyrenaica) inhabiting the Sierra Nevada Natural Space, southern Spain. Using classification and regression trees, we explored how the presence of Sarcoptes scabiei (a highly contagious mite), the off-host environment and the host sex govern the prevalence and abundance of lice and ticks. Null model analysis was applied to assess the impact of S. scabiei on the structure of the ectoparasite communities. Our results suggest that S. scabiei infestation acts in tandem with off-host environment and host sex to define the prevalence and abundance of lice and ticks. We also provided evidence for differences in species co-occurrence only at the early stages of S. scabiei infestation. Regarding species diversity, we recorded that ectoparasite communities in scabietic ibexes reached a high richness faster than those in healthy individuals. Even though we show that ectoparasite burden is correlated with S. scabiei infestation, off-host environment and host sex, the species response to S. scabiei infestation and climate seem to be highly variable and influenced by ectoparasite life-history traits. Ectoparasite communities also appear resilient to perturbations which is in agreement with what was previously reported for endoparasites. Future refinement of sample collection and the incorporation of ecological and epidemiological-related variables may allow us to establish causal effects and deepen the knowledge about the mechanisms and consequences of ectoparasite interactions.

Direct Observations of Interstellar H, He, and O by the Interstellar Boundary Explorer (Invited)

NASA Astrophysics Data System (ADS)

Moebius, E.; Bochsler, P. A.; Bzowski, M.; Crew, G. B.; Funsten, H. O.; Fuselier, S. A.; Ghielmetti, A.; Heirtzler, D.; Izmodenov, V.; Kubiak, M.; Kucharek, H.; Lee, M. A.; Leonard, T.; McComas, D. J.; Petersen, L.; Saul, L. A.; Scheer, J.; Schwadron, N. A.; Witte, M.; Wurz, P.

2009-12-01

Due to the motion of the Sun relative to its neighborhood, the neutral gas of the local in-terstellar medium (LISM) flows through the inner heliosphere where it is subject to ioni-zation, the Sun’s gravity, and radiation pressure. Observing the resulting spatial distribu-tion and flow pattern of several interstellar gas species with UV backscatter, pickup ion, and neutral atom imaging techniques allows us to unravel the physical conditions of the LISM and its interaction with the heliosphere. Imaging of the neutral gas flow directly with energetic neutral atom (ENA) cameras yields the most accurate account of the ki-netic parameters of the interstellar gas, but so far this has been carried out only for He using Ulysses GAS. IBEX, which was launched in October 2008, provides the capability for simultaneous flow observations of several interstellar species with its triple-time-of-flight IBEX-Lo sensor. Because H and O are strongly affected by the heliospheric inter-face while He is not, a direct comparison between these species enables an independent assessment of the slowdown and heating processes in the outer heliosheath. Likewise, IBEX observations will constrain models of the heliospheric interaction and provide a test of the heliospheric asymmetry - recently inferred from Voyager and SOHO SWAN observations - that is seen as an indicator for the interstellar magnetic field direction. During the first half year of its mission IBEX has observed the interstellar He, O, and H flow. We will present an overview and preliminary analysis of these first interstellar mul-tispecies scans of the interstellar gas flow in spring and fall 2009.

Hybrid Simulations for the Turbulence and the Wave-Particle Interaction in the Inner and the Outer Heliopause.

NASA Astrophysics Data System (ADS)

Kucharek, H.; Pogorelov, N. V.; Mueller, H. R.; Gamayunov, K. V.

2014-12-01

IBEX and the Voyager spacecraft provide unique data sets that enable us to study plasma conditions in the key regions of the heliosphere: the termination shock (TS), at the heliospause and beyond. Whereas Voyager provides in-situ plasma data IBEX uses neutral atoms to remote sense the plasma conditions in interstellar space, the heliopause, and the termination shock. The IBEX data sets revealed a ribbon feature which was unexpected and which formation mechanism is still unknown. Even the location of the source is not known considering the fact that IBEX measures neutral along a line of sight. Aside from the ribbon feature the distributed ENA flux shows temporal variations that are unexplained, in particular at solar wind energies. Furthermore, Voyager observations questioned the role of the termination shock being the main accelerator for high-energetic ions. All of these outstanding science questions are associated with wave-particle interaction and turbulence in most likely different key regions of the heliosphere. Hybrid simulations, which included all kinetic processes self-consistently on the ion level, are a proven to be a very powerful tool to investigate wave-particle interaction, turbulence, and phase-space evolution of pickup and solar wind ions. We performed 3D multi-species hybrid simulations for an ion/ion beam instability to study the temporal evolution of ion distributions, their stability, and the associated ENA generation under the influence of self-generated waves in the heliosheath. We investigated the energetization of ions downstream of the TS, the turbulence, and growth rate of instabilities in the heliosheath. The simulations show that ions can be accelerated downstream of the TS by trapping ions in coherent wave fronts.

Molecular identification and phylogenetic study of Demodex caprae.

PubMed

Zhao, Ya-E; Cheng, Juan; Hu, Li; Ma, Jun-Xian

2014-10-01

The DNA barcode has been widely used in species identification and phylogenetic analysis since 2003, but there have been no reports in Demodex. In this study, to obtain an appropriate DNA barcode for Demodex, molecular identification of Demodex caprae based on mitochondrial cox1 was conducted. Firstly, individual adults and eggs of D. caprae were obtained for genomic DNA (gDNA) extraction; Secondly, mitochondrial cox1 fragment was amplified, cloned, and sequenced; Thirdly, cox1 fragments of D. caprae were aligned with those of other Demodex retrieved from GenBank; Finally, the intra- and inter-specific divergences were computed and the phylogenetic trees were reconstructed to analyze phylogenetic relationship in Demodex. Results obtained from seven 429-bp fragments of D. caprae showed that sequence identities were above 99.1% among three adults and four eggs. The intraspecific divergences in D. caprae, Demodex folliculorum, Demodex brevis, and Demodex canis were 0.0-0.9, 0.5-0.9, 0.0-0.2, and 0.0-0.5%, respectively, while the interspecific divergences between D. caprae and D. folliculorum, D. canis, and D. brevis were 20.3-20.9, 21.8-23.0, and 25.0-25.3, respectively. The interspecific divergences were 10 times higher than intraspecific ones, indicating considerable barcoding gap. Furthermore, the phylogenetic trees showed that four Demodex species gathered separately, representing independent species; and Demodex folliculorum gathered with canine Demodex, D. caprae, and D. brevis in sequence. In conclusion, the selected 429-bp mitochondrial cox1 gene is an appropriate DNA barcode for molecular classification, identification, and phylogenetic analysis of Demodex. D. caprae is an independent species and D. folliculorum is closer to D. canis than to D. caprae or D. brevis.

IMPACT OF PLANETARY GRAVITATION ON HIGH-PRECISION NEUTRAL ATOM MEASUREMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kucharek, H.; Möbius, E.; Lee, M. A.

2015-10-15

Measurements of energetic neutral atoms (ENAs) have been extremely successful in providing very important information on the physical processes inside and outside of our heliosphere. For instance, recent Interstellar Boundary Explorer (IBEX) observations have provided new insights into the local interstellar environment and improved measurements of the interstellar He temperature, velocity, and direction of the interstellar flow vector. Since particle collisions are rare, and radiation pressure is negligible for these neutrals, gravitational forces mainly determine the trajectories of neutral He atoms. Depending on the distance of an ENA to the source of a gravitational field and its relative speed andmore » direction, this can result in significant deflection and acceleration. In this paper, we investigate the impact of the gravitational effects of Earth, the Moon, and Jupiter on ENA measurements performed in Earth’s orbit. The results show that current analysis of the interstellar neutral parameters by IBEX is not significantly affected by planetary gravitational effects. We further studied the possibility of whether or not the Helium focusing cone of the Sun and Jupiter could be measured by IBEX and whether or not these cones could be used as an independent measure of the temperature of interstellar Helium.« less

Interstellar Mapping and Acceleration Probe (IMAP)

NASA Astrophysics Data System (ADS)

Schwadron, Nathan

2016-04-01

Our piece of cosmic real-estate, the heliosphere, is the domain of all human existence - an astrophysical case-history of the successful evolution of life in a habitable system. By exploring our global heliosphere and its myriad interactions, we develop key physical knowledge of the interstellar interactions that influence exoplanetary habitability as well as the distant history and destiny of our solar system and world. IBEX was the first mission to explore the global heliosphere and in concert with Voyager 1 and Voyager 2 is discovering a fundamentally new and uncharted physical domain of the outer heliosphere. In parallel, Cassini/INCA maps the global heliosphere at energies (~5-55 KeV) above those measured by IBEX. The enigmatic IBEX ribbon and the INCA belt were unanticipated discoveries demonstrating that much of what we know or think we understand about the outer heliosphere needs to be revised. The next quantum leap enabled by IMAP will open new windows on the frontier of Heliophysics at a time when the space environment is rapidly evolving. IMAP with 100 times the combined resolution and sensitivity of IBEX and INCA will discover the substructure of the IBEX ribbon and will reveal in unprecedented resolution global maps of our heliosphere. The remarkable synergy between IMAP, Voyager 1 and Voyager 2 will remain for at least the next decade as Voyager 1 pushes further into the interstellar domain and Voyager 2 moves through the heliosheath. The "A" in IMAP refers to acceleration of energetic particles. With its combination of highly sensitive pickup and suprathermal ion sensors, IMAP will provide the species and spectral coverage as well as unprecedented temporal resolution to associate emerging suprathermal tails with interplanetary structures and discover underlying physical acceleration processes. These key measurements will provide what has been a critical missing piece of suprathermal seed particles in our understanding of particle acceleration to high

Mycoplasma conjunctivae in domestic small ruminants from high mountain habitats in Northern Spain.

PubMed

Fernández-Aguilar, Xavier; Cabezón, Oscar; Marco, Ignasi; Mentaberre, Gregorio; Frey, Joachim; Lavín, Santiago; López-Olvera, Jorge R

2013-12-13

Infectious keratoconjunctivitis (IKC) is a clinical condition affecting eyes of domestic and wild Caprinae worldwide, and Mycoplasma conjunctivae is considered the primary causative agent of IKC in sheep, goats and wild Caprinae. Domestic ruminants from high mountain habitats share grazing areas with wild mountain ungulates, such as chamois (Rupicapra spp.), Alpine ibex (Capra ibex) and European mouflon (Ovis aries musimon), and domestic sheep seem to act as M. conjunctivae reservoir. In this study, the presence of M. conjunctivae in domestic sheep and goats from the two main mountain ranges of Northern Spain, the Pyrenees and the Cantabrian Mountains, has been investigated. Eye swabs were obtained from 439 domestic small ruminants selected from flocks that seasonally graze in alpine meadows during three consecutive years (2011-2012-2013). Seventy-nine out of the 378 domestic sheep (20.9%) tested positive to a M. conjunctivae specific real time-PCR (rt-PCR) in at least one eye, whereas all the 61 sampled domestic goats were negative. Statistically significant higher prevalence and higher proportion of infected flocks (P < 0.001) was observed in the Pyrenees (25.7%; 12 flocks out of 13), where M. conjunctivae is widespread and probably endemic in domestic sheep, than in the Cantabrian Mountains (7.8%; one flock out of six). Twenty-five sheep (three from the Pyrenees and 22 from the Cantabrian Mountains) which showed clinical signs consistent with infectious keratoconjunctivitis (IKC) were negative by rt-PCR. In contrast, 62 out of the 71 (87.3%) M. conjunctivae-positive sheep from the Pyrenees and the eight positive sheep from the Cantabrian Mountains were asymptomatic. This study provides rt-PCR-based evidences of M. conjunctivae maintenance in domestic sheep, as well as a relationship between prevalence in domestic sheep and previously reported M. conjunctivae and IKC in wild ruminants. Domestic goats do not seem to play an important role in the epidemiology

The effect of new interstellar medium parameters on the heliosphere and energetic neutral atoms from the interstellar boundary

DOE PAGES

Heerikhuisen, J.; Zirnstein, E. J.; Funsten, H. O.; ...

2014-03-05

Here we present new results from three-dimensional simulations of the solar wind interaction with the local interstellar medium (LISM) using recent observations by NASA's Interstellar Boundary EXplorer (IBEX) mission estimates of the velocity and temperature of the LISM. We investigate four strengths of the LISM magnetic field, from 1 to 4 μG, and adjust the LISM proton and hydrogen densities so that the distance to the termination shock (TS) in the directions of the Voyager spacecraft is just below 90 AU, and the density of hydrogen at the TS is close to 0.09 cm-3 in the nose direction. The orientationmore » of the magnetic field is chosen to point toward the center of the ribbon of enhanced energetic neutral atom (ENA) flux seen in the IBEX data. Our simulations show that the plasma and neutral properties in the outer heliosheath vary considerably as a function of the LISM magnetic field strength. We also show that the heliotail points downwind in all cases, though its structure is strongly affected by the external magnetic field. Lastly, comparison and consistency between the simulated ENA flux and the circularity of the ribbon as measured by IBEX are most consistent with a LISM magnetic field strength aligned with the center of the ribbon and a magnitude in the range 2.5-3 μG.« less

Where is the Most Likely Location Where the Secondary Interstellar Oxygen Atoms Are Created Around the Heliosheath?

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Szabo, A.; Paschalidis, N.; Grocer, A.; Jones, S.

2017-12-01

The secondary component of the interstellar neutral gas flow is originated from charge exchange between the undisturbed primary interstellar neutrals and the ions that have been deflected as they approach the heliopause. The secondary neutrals that are emitted from the interstellar ion flow through charge exchange carry information on the diverted flow and a fraction of them can travel to the Sun. Therefore, the secondary component of the interstellar neutrals is an excellent diagnostic tool to provide important information to constrain the shape of the heliopause. The presence of the secondary neutrals was predicted in the global heliospheric models and they are observed by Interstellar Boundary Explorer (IBEX) at Earth's orbit. Using the IBEX observations of neutral helium atoms, Kubiak et al. (2016, ApJS, 223, 25) approximated the parent distribution of the secondary interstellar He atoms (so-called Warm Breeze) with a homogeneous Maxwellian distribution function. Park et al. (2016, ApJ, 833, 130) analyzed IBEX observations of secondary interstellar helium and oxygen distributions at Earth's orbit. Lee et al. (2012, ApJS, 198, 10) constructed the heliospheric phase-space distribution function of an interstellar gas species in the Earth frame as a function of solar longitude. In this distribution, the authors assume that the distribution is a drifting Maxwellian at large distances from the Sun. In this study, we assume that a fraction of the secondary neutral atoms has a velocity vector toward the Sun and they can be described as a flow with a drifting Maxwellian distribution near the heliopause. Unlike the primary interstellar gas flow, the distribution of the secondary neutrals is expected to have a wide width and their bulk speeds are slower than the bulk speed of the primary interstellar gas flow. We compare Lee's distribution and IBEX observations of neutral oxygen atoms and then estimate the most likely direction where the secondary interstellar oxygen

On the stability of pick-up ion ring distributions in the outer heliosheath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Summerlin, Errol J.; Viñas, Adolfo F.; Moore, Thomas E.

The 'secondary energetic neutral atom (ENA)' hypothesis for the ribbon feature observed by the Interstellar Boundary Explorer (IBEX) posits that the neutral component of the solar wind continues beyond the heliopause and charge exchanges with interstellar ions in the Outer Heliosheath (OHS). This creates pick-up ions that gyrate about the draped interstellar magnetic field (ISMF) lines at pitch angles near 90° on the locus where the ISMF lies tangential to the heliopause and perpendicular to the heliocentric radial direction. This location closely coincides with the location of the ribbon feature according to the prevailing inferences of the ISMF orientation andmore » draping. The locally gyrating ions undergo additional charge exchange and escape as free-flying neutral atoms, many of which travel back toward the inner solar system and are imaged by IBEX as a ribbon tracing out the locus described above. For this mechanism to succeed, the pick-up ions must diffuse in pitch angle slowly enough to permit secondary charge exchange before their pitch angle distribution substantially broadens away from 90°. Previous work using linear Vlasov dispersion analysis of parallel propagating waves has suggested that the ring distribution in the OHS is highly unstable, which, if true, would make the secondary ENA hypothesis incapable of rendering the observed ribbon. In this paper, we extend this earlier work to more realistic ring distribution functions. We find that, at the low densities necessary to produce the observed IBEX ribbon via the secondary ENA hypothesis, growth rates are highly sensitive to the temperature of the beam and that even very modest temperatures of the ring beam corresponding to beam widths of <1° are sufficient to damp the self-generated waves associated with the ring beam. Thus, at least from the perspective of linear Vlasov dispersion analysis of parallel propagating waves, there is no reason to expect that the ring distributions necessary to

On the Stability of Pick-up Ion Ring Distributions in the Outer Heliosheath

NASA Astrophysics Data System (ADS)

Summerlin, Errol J.; Viñas, Adolfo F.; Moore, Thomas E.; Christian, Eric R.; Cooper, John F.

2014-10-01

The "secondary energetic neutral atom (ENA)" hypothesis for the ribbon feature observed by the Interstellar Boundary Explorer (IBEX) posits that the neutral component of the solar wind continues beyond the heliopause and charge exchanges with interstellar ions in the Outer Heliosheath (OHS). This creates pick-up ions that gyrate about the draped interstellar magnetic field (ISMF) lines at pitch angles near 90° on the locus where the ISMF lies tangential to the heliopause and perpendicular to the heliocentric radial direction. This location closely coincides with the location of the ribbon feature according to the prevailing inferences of the ISMF orientation and draping. The locally gyrating ions undergo additional charge exchange and escape as free-flying neutral atoms, many of which travel back toward the inner solar system and are imaged by IBEX as a ribbon tracing out the locus described above. For this mechanism to succeed, the pick-up ions must diffuse in pitch angle slowly enough to permit secondary charge exchange before their pitch angle distribution substantially broadens away from 90°. Previous work using linear Vlasov dispersion analysis of parallel propagating waves has suggested that the ring distribution in the OHS is highly unstable, which, if true, would make the secondary ENA hypothesis incapable of rendering the observed ribbon. In this paper, we extend this earlier work to more realistic ring distribution functions. We find that, at the low densities necessary to produce the observed IBEX ribbon via the secondary ENA hypothesis, growth rates are highly sensitive to the temperature of the beam and that even very modest temperatures of the ring beam corresponding to beam widths of <1° are sufficient to damp the self-generated waves associated with the ring beam. Thus, at least from the perspective of linear Vlasov dispersion analysis of parallel propagating waves, there is no reason to expect that the ring distributions necessary to produce the

Bovine viral diarrhea virus in free-ranging wild ruminants in Switzerland: low prevalence of infection despite regular interactions with domestic livestock.

PubMed

Casaubon, Julien; Vogt, Hans-Rudolf; Stalder, Hanspeter; Hug, Corinne; Ryser-Degiorgis, Marie-Pierre

2012-10-29

In the frame of an eradication program for bovine viral diarrhea (BVD) in Swiss livestock, the question was raised whether free-ranging wildlife could threaten the success of this sanitary measure. Therefore, we conducted serological and virological investigations on BVD virus (BVDV) infections in the four indigenous wild ruminant species (roe deer, red deer, Alpine chamois and Alpine ibex) from 2009 to 2011, and gathered information on interactions between wild and domestic ruminants in an alpine environment by questionnaire survey. Thirty-two sera out of 1'877 (1.7%, 95% confidence interval [CI] 1.2-2.4) were seropositive for BVDV, and a BVDV1 sub genotype h virus was found in a seropositive chamois (0.05%, 95% CI 0.001-0.3). The seropositive animals originated from sub-alpine or alpine regions and significantly more seropositive red deer, chamois and ibex than roe deer were found. There were no statistically significant differences between sampling units, age classes, genders, and sampling years. The obtained prevalences were significantly lower than those documented in livestock, and most positive wild ruminants were found in proximity of domestic outbreaks. Additionally, BVDV seroprevalence in ibex was significantly lower than previously reported from Switzerland. The survey on interspecific interactions revealed that interactions expected to allow BVDV transmission, from physical contacts to non-simultaneous use of the same areas, regularly occur on pastures among all investigated ruminant species. Interactions involving cervids were more often observed with cattle than with small ruminants, chamois were observed with all three domestic species, and ibex interacted mostly with small ruminants. Interactions related to the use of anthropogenic food sources were frequently observed, especially between red deer and cattle in wintertime. To our knowledge, this is the first report of BVDV RNA isolated from an Alpine chamois. Nevertheless, our results suggest that

Mycobacterium caprae Infection in Livestock and Wildlife, Spain

PubMed Central

Rodríguez, Sabrina; Bezos, Javier; Romero, Beatriz; de Juan, Lucía; Álvarez, Julio; Castellanos, Elena; Moya, Nuria; Lozano, Francisco; Javed, M. Tariq; Sáez-Llorente, José L.; Liébana, Ernesto; Mateos, Ana; Domínguez, Lucas; Tuberculosis, Monitoring of Animal

2011-01-01

Mycobacterium caprae is a pathogen that can infect animals and humans. To better understand the epidemiology of M. caprae, we spoligotyped 791 animal isolates. Results suggest infection is widespread in Spain, affecting 6 domestic and wild animal species. The epidemiology is driven by infections in caprids, although the organism has emerged in cattle. PMID:21392452

Phylogenetic analysis of Demodex caprae based on mitochondrial 16S rDNA sequence.

PubMed

Zhao, Ya-E; Hu, Li; Ma, Jun-Xian

2013-11-01

Demodex caprae infests the hair follicles and sebaceous glands of goats worldwide, which not only seriously impairs goat farming, but also causes a big economic loss. However, there are few reports on the DNA level of D. caprae. To reveal the taxonomic position of D. caprae within the genus Demodex, the present study conducted phylogenetic analysis of D. caprae based on mt16S rDNA sequence data. D. caprae adults and eggs were obtained from a skin nodule of the goat suffering demodicidosis. The mt16S rDNA sequences of individual mite were amplified using specific primers, and then cloned, sequenced, and aligned. The sequence divergence, genetic distance, and transition/transversion rate were computed, and the phylogenetic trees in Demodex were reconstructed. Results revealed the 339-bp partial sequences of six D. caprae isolates were obtained, and the sequence identity was 100% among isolates. The pairwise divergences between D. caprae and Demodex canis or Demodex folliculorum or Demodex brevis were 22.2-24.0%, 24.0-24.9%, and 22.9-23.2%, respectively. The corresponding average genetic distances were 2.840, 2.926, and 2.665, and the average transition/transversion rates were 0.70, 0.55, and 0.54, respectively. The divergences, genetic distances, and transition/transversion rates of D. caprae versus the other three species all reached interspecies level. The five phylogenetic trees all presented that D. caprae clustered with D. brevis first, and then with D. canis, D. folliculorum, and Demodex injai in sequence. In conclusion, D. caprae is an independent species, and it is closer to D. brevis than to D. canis, D. folliculorum, or D. injai.

Bovine viral diarrhea virus in free-ranging wild ruminants in Switzerland: low prevalence of infection despite regular interactions with domestic livestock

PubMed Central

2012-01-01

Background In the frame of an eradication program for bovine viral diarrhea (BVD) in Swiss livestock, the question was raised whether free-ranging wildlife could threaten the success of this sanitary measure. Therefore, we conducted serological and virological investigations on BVD virus (BVDV) infections in the four indigenous wild ruminant species (roe deer, red deer, Alpine chamois and Alpine ibex) from 2009 to 2011, and gathered information on interactions between wild and domestic ruminants in an alpine environment by questionnaire survey. Results Thirty-two sera out of 1’877 (1.7%, 95% confidence interval [CI] 1.2-2.4) were seropositive for BVDV, and a BVDV1 sub genotype h virus was found in a seropositive chamois (0.05%, 95% CI 0.001-0.3). The seropositive animals originated from sub-alpine or alpine regions and significantly more seropositive red deer, chamois and ibex than roe deer were found. There were no statistically significant differences between sampling units, age classes, genders, and sampling years. The obtained prevalences were significantly lower than those documented in livestock, and most positive wild ruminants were found in proximity of domestic outbreaks. Additionally, BVDV seroprevalence in ibex was significantly lower than previously reported from Switzerland. The survey on interspecific interactions revealed that interactions expected to allow BVDV transmission, from physical contacts to non-simultaneous use of the same areas, regularly occur on pastures among all investigated ruminant species. Interactions involving cervids were more often observed with cattle than with small ruminants, chamois were observed with all three domestic species, and ibex interacted mostly with small ruminants. Interactions related to the use of anthropogenic food sources were frequently observed, especially between red deer and cattle in wintertime. Conclusions To our knowledge, this is the first report of BVDV RNA isolated from an Alpine chamois

Molecular characterisation of Mycobacterium caprae strains isolated in Poland.

PubMed

Krajewska-Wędzina, Monika; Kozińska, Monika; Orłowska, Blanka; Weiner, Marcin; Szulowski, Krzysztof; Augustynowicz-Kopeć, Ewa; Anusz, Krzysztof; Smith, Noel H

2018-03-10

Bovine tuberculosis (bovine TB, bTB) is caused by bovine bacilli: Mycobacterium bovis and M caprae The studies conducted in Poland, in the National Bovine Tuberculosis Reference Laboratory in the Department of Microbiology of the National Veterinary Research Institute in Pulawy, show that animal tuberculosis in Poland is also caused by M caprae We here describe the identification and genotypic assessment of 52 isolates of M caprae obtained from Polish cattle and wild animals over the last five years. We show that strains isolated from bison have significant genotypic diversity and are distinct compared with the genotypes of strains isolated from cattle. Similarly, isolates from cattle herds can be highly genotypically variable. Formal designation of the members of the Mycobacterium tuberculosis complex is controversial in Poland; there is a gap in veterinary legislation with regard to bTB and no explicit mention of M caprae causing tuberculosis in animal. © British Veterinary Association (unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

WHY ARE THE MAGNETIC FIELD DIRECTIONS MEASURED BY VOYAGER 1 ON BOTH SIDES OF THE HELIOPAUSE SO SIMILAR?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grygorczuk, J.; Czechowski, A.; Grzedzielski, S., E-mail: jolagry@cbk.waw.pl

The solar wind carves a cavity in the interstellar plasma bounded by a surface, called the heliopause (HP), that separates the plasma and magnetic field of solar origin from those of interstellar origin. It is now generally accepted that in 2012 August Voyager 1 (V1) crossed that boundary. Unexpectedly, the magnetic fields on both sides of the HP, although theoretically independent of each other, were found to be similar in direction. This delayed the identification of the boundary as the HP and led to many alternative explanations. Here, we show that the Voyager 1 observations can be readily explained and,more » after the Interstellar Boundary Explorer (IBEX) discovery of the ribbon, could even have been predicted. Our explanation relies on the fact that the Voyager 1 and undisturbed interstellar field directions (which we assume to be given by the IBEX ribbon center (RC)) share the same heliolatitude (∼34.°5) and are not far separated in longitude (difference ∼27°). Our result confirms that Voyager 1 has indeed crossed the HP and offers the first independent confirmation that the IBEX RC is in fact the direction of the undisturbed interstellar magnetic field. For Voyager 2, we predict that the difference between the inner and outer magnetic field directions at the HP will be significantly larger than that observed by Voyager 1 (∼30° instead of ∼20°), and that the outer field direction will be close to the RC.« less

LOCAL INTERSTELLAR MAGNETIC FIELD DETERMINED FROM THE INTERSTELLAR BOUNDARY EXPLORER RIBBON

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; Livadiotis, G.; McComas, D. J.

2016-02-10

The solar wind emanating from the Sun interacts with the local interstellar medium (LISM), forming the heliosphere. Hydrogen energetic neutral atoms (ENAs) produced by the solar-interstellar interaction carry important information about plasma properties from the boundaries of the heliosphere, and are currently being measured by NASA's Interstellar Boundary Explorer (IBEX). IBEX observations show the existence of a “ribbon” of intense ENA emission projecting a circle on the celestial sphere that is centered near the local interstellar magnetic field (ISMF) vector. Here we show that the source of the IBEX ribbon as a function of ENA energy outside the heliosphere, uniquelymore » coupled to the draping of the ISMF around the heliopause, can be used to precisely determine the magnitude (2.93 ± 0.08 μG) and direction (227.°28 ± 0.°69, 34.°62 ± 0.°45 in ecliptic longitude and latitude) of the pristine ISMF far (∼1000 AU) from the Sun. We find that the ISMF vector is offset from the ribbon center by ∼8.°3 toward the direction of motion of the heliosphere through the LISM, and their vectors form a plane that is consistent with the direction of deflected interstellar neutral hydrogen, thought to be controlled by the ISMF. Our results yield draped ISMF properties close to that observed by Voyager 1, the only spacecraft to directly measure the ISMF close to the heliosphere, and give predictions of the pristine ISMF that Voyager 1 has yet to sample.« less

A Test of the Interstellar Boundary EXplorer Ribbon Formation in the Outer Heliosheath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gamayunov, Konstantin V.; Rassoul, Hamid; Heerikhuisen, Jacob, E-mail: kgamayunov@fit.edu

NASA’s Interstellar Boundary EXplorer ( IBEX ) mission is imaging energetic neutral atoms (ENAs) propagating to Earth from the outer heliosphere and local interstellar medium (LISM). A dominant feature in all ENA maps is a ribbon of enhanced fluxes that was not predicted before IBEX . While more than a dozen models of the ribbon formation have been proposed, consensus has gathered around the so-called secondary ENA model. Two classes of secondary ENA models have been proposed; the first class assumes weak scattering of the energetic pickup protons in the LISM, and the second class assumes strong but spatially localizedmore » scattering. Here we present a numerical test of the “weak scattering” version of the secondary ENA model using our gyro-averaged kinetic model for the evolution of the phase-space distribution of protons in the outer heliosheath. As input for our test, we use distributions of the primary ENAs from our MHD-plasma/kinetic-neutral model of the heliosphere-LISM interaction. The magnetic field spectrum for the large-scale interstellar turbulence and an upper limit for the amplitude of small-scale local turbulence (SSLT) generated by protons are taken from observations by Voyager 1 in the LISM. The hybrid simulations of energetic protons are also used to set the bounding wavenumbers for the spectrum of SSLT. Our test supports the “weak scattering” version. This makes an additional solid step on the way to understanding the origin and formation of the IBEX ribbon and thus to improving our understanding of the interaction between the heliosphere and the LISM.« less

GEOMETRY AND CHARACTERISTICS OF THE HELIOSHEATH REVEALED IN THE FIRST FIVE YEARS OF INTERSTELLAR BOUNDARY EXPLORER OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zirnstein, E. J.; McComas, D. J.; Schwadron, N. A.

2016-07-20

We investigate and interpret the geometry and characteristics of the inner heliosheath (IHS) plasma and their impact on the heliotail structure as observed in energetic neutral atom (ENA) maps acquired during the first 5 yr of Interstellar Boundary Explorer ( IBEX ) observations. In particular, IBEX observations of the heliotail reveal distinct, localized emission features (lobes) that provide a rich set of information about the properties and evolution of the heliosheath plasma downstream of the termination shock (TS). We analyze the geometry of the heliotail lobes and find that the plane intersecting the port and starboard heliotail lobe centers ismore » ∼6° from the solar equatorial plane, and the plane intersecting the north and south heliotail lobe centers is ∼90° from the solar equatorial plane, both indicating strong correlation with the fast–slow solar wind asymmetry, and thus reflecting the structure of the IHS flow around the Sun. We also analyze the key parameters and processes that form and shape the port and starboard lobes, which are distinctly different from the north and south lobes. By comparing IBEX ENA observations with results from a simplistic flow model of the heliosphere and a multicomponent description for pickup ions (PUIs) in the IHS, we find that the port and starboard lobe formation is driven by a thin IHS, large nose–tail asymmetry of the distance to the TS (and consequently, a large nose–tail asymmetry of the relative abundance of PUIs at the TS) and the energy-dependent removal of PUIs by charge exchange in the IHS.« less

Simulation of the Solar Wind Dynamic Pressure Increase in 2014 and Its Effect on Energetic Neutral Atom Fluxes from the Heliosphere

NASA Astrophysics Data System (ADS)

Zirnstein, E. J.; Heerikhuisen, J.; McComas, D. J.; Pogorelov, N. V.; Reisenfeld, D. B.; Szalay, J. R.

2018-06-01

In late 2014, the solar wind dynamic pressure increased by ∼50% over a relatively short time (∼6 months). In early 2017, the Interstellar Boundary Explorer (IBEX) observed an increase in heliospheric energetic neutral atom (ENA) fluxes from directions near the front of the heliosphere. These enhanced ENA emissions resulted from the increase in SW pressure propagating through the inner heliosheath (IHS), affecting the IHS plasma pressure and emission of ∼keV ENA fluxes. We expand on the analysis by McComas et al. on the effects of this pressure change on ENA fluxes observed at 1 au using a three-dimensional, time-dependent simulation of the heliosphere. The pressure front has likely already crossed the termination shock (TS) in all directions, but ENA fluxes observed at 1 au will change over the coming years, as the TS, heliopause, and IHS plasma pressure continue to change in response to the SW pressure increase. Taken in isolation, the pressure front creates a “ring” of increasing ENA fluxes projected in the sky that expands in angular radius over time, as a function of the distances to the heliosphere boundaries and the ENA propagation speed. By tracking the position of this ring over time in our simulation, we demonstrate a method for estimating the distances to the TS, heliopause, and ENA source region that can be applied to IBEX data. This will require IBEX observations at 4.3 keV up through ∼2020, and longer times at lower ENA energies, in order to observe significant changes from the heliotail.

MORE EVIDENCE THAT VOYAGER 1 IS STILL IN THE HELIOSPHERE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gloeckler, G.; Fisk, L. A., E-mail: gglo@umich.edu

The investigators of the Voyager mission currently exploring the heliosheath have concluded and announced that Voyager 1 (V1) has crossed the heliopause and is now in the interstellar medium. This conclusion is based primarily on the plasma wave observations of Gurnett et al., which reveal a plasma electron density that resembles the density expected in the local interstellar medium. Fisk and Gloeckler have disputed the conclusion that V1 has crossed the heliopause, pointing out that to account for all the V1 observations, particularly the magnetic field direction together with the density, it is necessary to conclude that the higher densitiesmore » observed by Gurnett et al. are due to compressed solar wind. In this Letter it is shown that the model of Fisk and Gloeckler for the nose region of the heliosheath can account in detail for the intensity and spectral shape of Energetic Neutral Hydrogen observed by the Interstellar Boundary Explorer (IBEX) in the directions of V1 and Voyager 2 (V2). A key feature of the Fisk and Gloeckler model is the existence of a region in the heliosheath where the solar wind is compressed and heated, followed by a region where the solar wind is compressed but cold. The region of cold compressed solar wind provides a unique explanation for the low-energy IBEX observations, and since this is the region where V1 must now reside, the low-energy IBEX observations provide strong evidence that V1 is still in the heliosphere.« less

Local interstellar magnetic field determined from the interstellar boundary explorer ribbon

DOE PAGES

Zirnstein, E. J.; Heerikhuisen, J.; Funsten, H. O.; ...

2016-02-08

The solar wind emanating from the Sun interacts with the local interstellar medium (LISM), forming the heliosphere. Hydrogen energetic neutral atoms (ENAs) produced by the solar-interstellar interaction carry important information about plasma properties from the boundaries of the heliosphere, and are currently being measured by NASA's Interstellar Boundary Explorer (IBEX). IBEX observations show the existence of a “ribbon” of intense ENA emission projecting a circle on the celestial sphere that is centered near the local interstellar magnetic field (ISMF) vector. Here we show that the source of the IBEX ribbon as a function of ENA energy outside the heliosphere, uniquelymore » coupled to the draping of the ISMF around the heliopause, can be used to precisely determine the magnitude (2.93 ± 0.08 μG) and direction (227.°28 ± 0.°69, 34.°62 ± 0.°45 in ecliptic longitude and latitude) of the pristine ISMF far (~1000 AU) from the Sun. We find that the ISMF vector is offset from the ribbon center by ~8.°3 toward the direction of motion of the heliosphere through the LISM, and their vectors form a plane that is consistent with the direction of deflected interstellar neutral hydrogen, thought to be controlled by the ISMF. Lastly, our results yield draped ISMF properties close to that observed by Voyager 1, the only spacecraft to directly measure the ISMF close to the heliosphere, and give predictions of the pristine ISMF that Voyager 1 has yet to sample.« less

Characteristics of hypervelocity impact craters on LDEF experiment S1003 and implications of small particle impacts on reflective surfaces

NASA Technical Reports Server (NTRS)

Mirtich, Michael J.; Rutledge, Sharon K.; Banks, Bruce A.; Devries, Christopher; Merrow, James E.

1993-01-01

The Ion Beam textured and coated surfaces EXperiment (IBEX), designated S1003, was flown on LDEF at a location 98 deg in a north facing direction relative to the ram direction. Thirty-six diverse materials were exposed to the micrometeoroid (and some debris) environment for 5.8 years. Optical property measurements indicated no changes for almost all of the materials except S-13G, Kapton, and Kapton-coated surfaces, and these changes can be explained by other environmental effects. From the predicted micrometeoroid flux of NASA SP-8013, no significant changes in optical properties of the surfaces due to micrometeoroids were expected. There were hypervelocity impacts on the various diverse materials flown on IBEX, and the characteristics of these craters were documented using scanning electron microscopy (SEM). The S1003 alumigold-coated aluminum cover tray was sectioned into 2 cm x 2 cm pieces for crater documentation. The flux curve generated from this crater data fits well between the 1969 micrometeoroid model and the Kessler debris model for particles less than 10(exp -9) gm which were corrected for the S1003 positions (98 deg to ram). As the particle mass increases, the S1003 impact data is greater than that predicted by even the debris model. This, however, is consistent with data taken on intercostal F07 by the Micrometeoroid/Debris Special Investigating Group (M/D SIG). The mirrored surface micrometeoroid detector flown on IBEX showed no change in solar reflectance and corroborated the S1003 flux curve, as well as results of this surface flown on SERT 2 and OSO 3 for as long as 21 years.

Shedding of Clostridium difficile PCR ribotype 078 by zoo animals, and report of an unstable metronidazole-resistant isolate from a zebra foal (Equus quagga burchellii).

PubMed

Álvarez-Pérez, Sergio; Blanco, José L; Martínez-Nevado, Eva; Peláez, Teresa; Harmanus, Celine; Kuijper, Ed; García, Marta E

2014-03-14

Clostridium difficile is an emerging and potentially zoonotic pathogen, but its prevalence in most animal species, including exhibition animals, is currently unknown. In this study we assessed the prevalence of faecal shedding of C. difficile by zoo animals, and determined the ribotype, toxin profile and antimicrobial susceptibility of recovered isolates. A total of 200 samples from 40 animal species (36.5% of which came from plains zebra, Equus quagga burchellii) were analysed. C. difficile was isolated from 7 samples (3.5% of total), which came from the following animal species: chimpanzee (Pan troglodytes troglodytes), dwarf goat (Capra hircus), and Iberian ibex (Capra pyrenaica hispanica), with one positive sample each; and plains zebra, with 4 positive samples from 3 different individuals. Most recovered isolates (4/7, 57.1%) belonged to the epidemic PCR ribotype 078, produced toxins A and B, and had the genes encoding binary toxin (i.e. A(+)B(+)CDT(+) isolates). The remaining three isolates belonged to PCR ribotypes 039 (A(-)B(-)CDT(-)), 042 (A(+)B(+)CDT(-)) and 110 (A(-)B(+)CDT(-)). Regardless of their ribotype, all isolates displayed high-level resistance to the fluoroquinolones ciprofloxacin, enrofloxacin and levofloxacin. Some isolates were also resistant to meropenem and/or ertapenem. A ribotype 078 isolate recovered from a male zebra foal initially showed in vitro resistance to metronidazole (MIC ≥ 256 μg/ml), but lost that trait after subculturing on non-selective media. We conclude that zoo animals belonging to different species can carry ribotype 078 and other toxigenic strains of C. difficile showing resistance to antimicrobial compounds commonly used in veterinary and/or human medicine. Copyright © 2014 Elsevier B.V. All rights reserved.

Investigation of diamond-like carbon samples as a charge state conversion surface for neutral atom imaging detectors in space applications

NASA Astrophysics Data System (ADS)

Brigitte Neuland, Maike; Riedo, Andreas; Scheer, Jürgen; Wurz, Peter

2014-05-01

The detection of energetic neutral atoms is a substantial requirement on every space mission mapping particle populations of a planetary magnetosphere or plasma of the interstellar medium. For imaging neutrals, these first have to be ionized. Regarding the constraints of weight, volume and power consumption, the technique of surface ionization complies with all specifications of a space mission. Particularly low energy neutral atoms, which cannot be ionized by passing through a foil, are ionized by scattering on a charge state conversion surface. Since more than 30 years intense research work is done to find suitable materials for use as charge state conversion surfaces. Crucial parameters are the ionisation efficiency of the surface material and the scattering properties. Against all expectations, insulators showed very promising characteristics for serving as conversion surfaces. Particularly diamond-like carbon was proven advantageously: While efficiently ionising incoming neutral atoms, diamond stands out by its durability and chemical inertness. In the IBEX-Lo sensor, a diamond-like carbon surface is used for ionisation of neutral atoms. Energy resolved maps of neutral atoms from the IBEX mission revealed phenomena of the interaction between heliosphere and local interstellar medium (LISM) that demand for new theory and explanations [McComas et al., 2011]. Building on the successes of the IBEX mission, a follow up mission concept to further explore the boundaries of the heliosphere already exists. The Interstellar MApping Probe (IMAP) is planned to map neutral atoms in a larger energy range and with a distinct better angular resolution and sensitivity than IBEX [McComas et al.]. The aspired performance of the IMAP sensors implies also for charge state conversion surfaces with improved characteristics. We investigated samples of diamond-like carbon, manufactured by the chemical vapour and pulsed laser deposition method, regarding their ionisation efficiency

The existence and nature of the interstellar bow shock

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ben-Jaffel, Lotfi; Strumik, M.; Ratkiewicz, R.

2013-12-20

We report a new diagnosis of two different states of the local interstellar medium (LISM) near our solar system by using a sensitivity study constrained by several distinct and complementary observations of the LISM, solar wind, and inner heliosphere. Assuming the Interstellar Boundary Explorer (IBEX) He flow parameters for the LISM, we obtain a strength of ∼2.7 ± 0.2 μG and a direction pointing away from galactic coordinates (28, 52) ± 3° for the interstellar magnetic field as a result of fitting Voyager 1 and Voyager 2 in situ plasma measurements and IBEX energetic neutral atoms ribbon. When using Ulyssesmore » parameters for the LISM He flow, we recently reported the same direction but with a strength of 2.2 ± 0.1 μG. First, we notice that with Ulysses He flow, our solution is in the expected hydrogen deflection plane (HDP). In contrast, for the IBEX He flow, the solution is ∼20° away from the corresponding HDP plane. Second, the long-term monitoring of the interplanetary H I flow speed shows a value of ∼26 km s{sup –1} measured upwind from the Doppler shift in the strong Lyα sky background emission line. All elements of the diagnosis seem therefore to support Ulysses He flow parameters for the interstellar state. In that frame, we argue that reliable discrimination between superfast, subfast, or superslow states of the interstellar flow should be based on most existing in situ and remote observations used together with global modeling of the heliosphere. For commonly accepted LISM ionization rates, we show that a fast interstellar bow shock should be standing off upstream of the heliopause.« less

Carriage of Staphylococcus aureus by free-living wild animals in Spain.

PubMed

Porrero, M Concepción; Mentaberre, Gregorio; Sánchez, Sergio; Fernández-Llario, Pedro; Casas-Díaz, Encarna; Mateos, Ana; Vidal, Dolors; Lavín, Santiago; Fernández-Garayzábal, José-Francisco; Domínguez, Lucas

2014-08-01

The presence of methicillin-susceptible Staphylococcus aureus (MSSA) was analyzed in different free-living wild animals to assess the genetic diversity and predominant genotypes on each animal species. Samples were taken from the skin and/or nares, and isolates were characterized by spa typing, multilocus sequence typing (MLST) and antimicrobial susceptibility testing. The proportion of MSSA carriers were 5.00, 22.93, 19.78, and 17.67% in Eurasian griffon vulture, Iberian ibex, red deer, and wild boar, respectively (P = 0.057). A higher proportion of isolates (P = 0.000) were recovered from nasal samples (78.51%) than skin samples (21.49%), but the 9.26% of red deer and 18.25% of wild boar would have been undetected if only nasal samples had been tested. Sixty-three different spa types were identified, including 25 new spa types. The most common were t528 (43.59%) in Iberian ibex, t548 and t11212 (15.79% and 14.04%) in red deer, and t3750 (36.11%) in wild boar. By MLST, 27 STs were detected, of which 12 had not been described previously. The most frequent were ST581 for Iberian ibex (48.72%), ST425 for red deer (29.82%), and ST2328 for wild boar (42.36%). Isolates from Eurasian griffon vulture belong to ST133. Host specificity has been observed for the most frequent spa types and STs (P = 0.000). The highest resistance percentage was found against benzylpenicillin (average, 22.2%), although most of the S. aureus isolates were susceptible to all antimicrobial tested. Basically, MSSA isolates were different from those MRSA isolates previously detected in the same animal species. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

In vivo antitumor potential of Ipomoea pes-caprae on melanoma cancer

PubMed Central

Manigauha, Ashish; Kharya, M. D.; Ganesh, N.

2015-01-01

Background: The incidence of skin cancers is rising gradually. The treatment of melanoma is also necessary to prevent the spread of cancer to other body organs. Scientific literatures have not documented any evidence of the antitumor potential of Ipomoea pes-caprae on melanoma. Aim of the Study: Explore in vivo antitumor potential of I. pes-caprae on melanoma cancer. Materials and Methods: Petroleum ether (60°C–80°C), methanolic and aqueous extracts, and swaras prepared from the whole herb of I. pes-caprae were assessed for their antitumor activity. The extracts and swaras at doses of 25 and 50 mg/kg b. wt. were administered intraperitoneal along with chemo and radiotherapy for 40 days for exploring antitumor activity against melanoma cancer (B16F10) in male C57BL mice. The results obtained from tumor volume, and histopathological studies were compared with the control and dacarbazine used as a standard. Results: Antitumor effect of I. pes-caprae extracts and swaras on melanoma cancer was found to be significant (P < 0.01) compared to normal control. The tumor volume inhibition against tumor-bearing mice, although differed from each other, was concentration dependent. Administration of plant extracts and swaras from the day 1 since tumor inducted. The induction of tumor was found delayed by 10–15 days and the tumor volume on the day 40 was similar to the Dacarbazine treatment used as a standard. Conclusion: The results obtained from the tumor volume and histopathological studies clearly revealed the antitumor potential of I. pes-caprae on melanoma cancer. PMID:25829785

Numerical simulations of primary and secondary hydrogen ENA fluxes at 1 AU

DOE PAGES

Zirnstein, Eric; Heerikhuisen, Jacob; Pogorelov, Nikolai

2012-11-20

The interaction between the solar wind (SW) and the local interstellar medium (LISM) creates energetic neutral atoms (ENAs), mainly Hydrogen (H), at energies similar to ions in the SW. H ENAs are born from charge exchanges between SW protons and LISM H atoms. A large portion of measurable primary ENAs are born in the inner heliosheath (IHS), where the heated and condensed SW plasma has a large thermal component to direct ENAs back toward 1 AU. Secondary ENAs, however, require secondary charge exchanges before being detected at 1 AU. Primary ENAs born in the supersonic and subsonic SW may exitmore » the HP, charge exchange into pick-up ions (PUIs), and charge exchange again to become secondary ENAs. Recent IBEX observations show a ribbon of flux dominating the entire sky. It is possible that the IBEX ribbon is created through secondary charge exchange processes. In this article we present a numerical code that calculates primary and secondary H ENA fluxes by integrating along ENA trajectories. Here we will provide descriptions of the code and preliminary results.« less

PLASMA FLOWS AT VOYAGER 2 AWAY FROM THE MEASURED SUPRATHERMAL PRESSURES

DOE Office of Scientific and Technical Information (OSTI.GOV)

McComas, D. J.; Schwadron, N. A., E-mail: dmccomas@swri.edu

2014-11-01

Plasma flows measured by Voyager 2 show a clear rotation away from radially outward with increasing penetration into the inner heliosheath while the overall flow speed remains roughly constant. However, the direction of rotation is far more into the transverse, and less into the polar direction, than predicted. No current model reproduces the key observational results of (1) the direction of flow rotation or (2) constancy of the flow speed. Here we show that the direction is consistent with flow away from the region of maximum pressure in the inner heliosheath, ∼20° south of the upwind direction, as measured bymore » the Interstellar Boundary Explorer (IBEX). Further, we show that the dominance of the suprathermal ion pressure in the inner heliosheath measured by IBEX can explain both the observed flow rotation and constancy of the flow speed. These results indicate the critical importance of suprathermal ions in the physics of the inner heliosheath and have significant implications for understanding this key region of the heliosphere's interstellar interaction and astrophysical plasmas more broadly.« less

Inland occurrence of the strand plant Ipomeoa pes-caprae (Convolvulaceae) around Lake Nicaragua

Treesearch

Margaret S. Devall; Leonard B. Thien

2005-01-01

Ipomoea pes-caprae (L.) Roth (railroad vine, Convolvulaceae) is a pantropical, perenial beach plant that forms large patches just above the high tide line on coastal beaches and dunes throughout tropical and subtropical areas of the world. In spite of its wide distribution, only rare occurrences of I. pes-caprae have been...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wood, Brian E.; Müller, Hans-Reinhard; Bzowski, Maciej

We explore the possibility that interstellar O and Ne may be contributing to the particle signal from the GAS instrument on Ulysses, which is generally assumed to be entirely He. Motivating this study is the recognition that an interstellar temperature higher than any previously estimated from Ulysses data could potentially resolve a discrepancy between Ulysses He measurements and those from the Interstellar Boundary Explorer (IBEX). Contamination by O and Ne could lead to Ulysses temperature measurements that are too low. We estimate the degree of O and Ne contamination necessary to increase the inferred Ulysses temperature to 8500 K, whichmore » would be consistent with both the Ulysses and IBEX data given the same interstellar flow speed. We find that producing the desired effect requires a heavy element contamination level of ∼9% of the total Ulysses/GAS signal. However, this degree of heavy element contribution is about an order of magnitude higher than expected based on our best estimates of detection efficiencies, ISM abundances, and heliospheric survival probabilities, making it unlikely that heavy element contamination is significantly affecting temperatures derived from Ulysses data.« less

Pickup Ion Dynamics in the Outer Heliosheath Associated with the Growth of Kelvin-Helmholtz Instability at the Heliopause

NASA Astrophysics Data System (ADS)

Tsubouchi, K.

2017-12-01

A discovery of "IBEX ribbon", localized bright emission of energetic neutral atoms, has brought new insights into the plasma environment of its source region beyond the heliosphere. It has been basically established that its geometrical property is associated with the local interstellar magnetic field draped on the heliopause, and pickup ions (PUIs) in the outer heliosheath (OHS) must be its primary source particles. Understanding the PUI dynamics in OHS more in detail is our motivation for this study. We performed two-dimensional hybrid simulations to evaluate the response of PUIs to the structural variation in the heliosheath. We assumed the simulation system such that the background plasma is hot solar wind in the inner heliosheath and cold interstellar plasma in OHS, and the directions of these flows are tangential to the heliopause. Such a situation leads to the growth of Kelvin-Helmholtz instability (KHI), where the plasma mixing and turbulence excitation takes place. We identified that non-stationarity and non-uniformity emerges in the PUI density structure in a specific energy range as KHI process advances. Relevance of these results to the expected observation like IBEX ribbon will be discussed.

A Heliosphere Buffeted by Interstellar Turbulence?

NASA Astrophysics Data System (ADS)

Jokipii, J. R.; Giacalone, J.

2014-12-01

Recent observations from IBEX combined with previous measurements from other sources suggest new, local, effects of interstellar turbulence. Observations of various interstellar parameters such as the magnetic field, fluid velocity and electron density, over large spatial scales, have revealed a broadband Kolmogorov spectrum of interstellar turbulence which pervades most of interstellar space. The outer scale (or coherence scale of this turbulence) is found to be approximately 10^19 cm and the inner cutoff scale is less than 1000 km. The root-mean-square relative fluctuation in the fluid and the magnetic-field parameters is of order unity. If this turbulence exists at the heliosphere, the root-mean-square relative fluctuations at 100 (heliospheric) AU scales is approximately 0.1. The recently published value for the change In observed velocity direction for the interstellar flow relative to the heliosphere (Frisch, etal, 2014)is consistent with this. Similarly, interpreting the width of the IBEX ribbon in terms of a fluctuating magnetic field also is in agreement with this picture. Observations of TeV cosmic rays can also be explained. Potential effects of these fluctuations in the interstellar medium on the heliosphere will be discussed. Reference: Frisch, etal, Science, 341, 480

Dynamics of Orbits near 3:1 Resonance in the Earth-Moon System

NASA Technical Reports Server (NTRS)

Dichmann, Donald J.; Lebois, Ryan; Carrico, John P., Jr.

2013-01-01

The Interstellar Boundary Explorer (IBEX) spacecraft is currently in a highly elliptical orbit around Earth with a period near 3:1 resonance with the Moon. Its orbit is oriented so that apogee does not approach the Moon. Simulations show this orbit to be remarkably stable over the next twenty years. This article examines the dynamics of such orbits in the Circular Restricted 3-Body Problem (CR3BP). We look at three types of periodic orbits, each exhibiting a type of symmetry of the CR3BP. For each of the orbit types, we assess the local stability using Floquet analysis. Although not all of the periodic solutions are stable in the mathematical sense, any divergence is so slow as to produce practical stability over several decades. We use Poincare maps with twenty-year propagations to assess the nonlinear stability of the orbits, where the perturbation magnitudes are related to the orbit uncertainty for the IBEX mission. Finally we show that these orbits belong to a family of orbits connected in a bifurcation diagram that exhibits exchange of stability. The analysis of these families of period orbits provides a valuable starting point for a mission orbit trade study.

Open Questions, New Instrumentation, and Challenges for Heliospheric Physics beyond 2020

NASA Astrophysics Data System (ADS)

Desai, Mihir; Allegrini, Frederic

The last decade has seen tremendous breakthroughs in our knowledge of the outer edges of the heliosphere and the interaction between the Sun and its local galactic neighborhood. These advances include the crossing of the termination shock and perhaps the heliopause by Voyager 1 and global imaging of energetic neutral atom (ENA) emission from the outer heliosphere by IBEX and Cassini. IBEX discovered a narrow “ribbon” of ENA emissions encircling the heliosphere, and provided direct measurements of interstellar neutral atoms that point to the absence of a bow shock beyond the heliopause. The big picture provided by IBEX, complemented by Voyager observations, shows that the asymmetry of the heliosphere is shaped by the surrounding interstellar magnetic field and that the physical processes that control the interaction exist on relatively small spatial and temporal scales (months) that are not currently measured. Additionally, in-situ observations from ACE, Wind, SoHO, SAMPEX, and STEREO have contributed dramatically to our understanding of solar energetic particle (SEP) events, of the importance of suprathermal ions for efficient energization, of the sources and evolution of solar wind, interplanetary magnetic field, corona mass ejections (CMEs), and SEPs that impact geospace and the heliosphere. These phenomena are controlled by myriad complex and poorly understood physical effects that must be unraveled to develop a complete picture of particle acceleration and transport and of the causes and impacts of interplanetary disturbances on geospace and the heliosphere. In this talk I will summarize our current state of knowledge in heliospheric physics, identify key questions that will be addressed by upcoming missions like Solar Probe Plus and Solar Orbiter, and then discuss a new set of challenges that need to be met in order to obtain a complete understanding of the solar and interplanetary drivers of Space Weather and SEPs, and to discover how our heliosphere

The Interstellar Mapping and Acceleration Probe - A Mission to Discover the Origin of Particle Acceleration and its Fundamental Connection to the Global Interstellar Interaction

NASA Astrophysics Data System (ADS)

Schwadron, N.

2017-12-01

Our piece of cosmic real-estate, the heliosphere, is the domain of all human existence - an astrophysical case-history of the successful evolution of life in a habitable system. The Interstellar Boundary Explorer (IBEX) was the first mission to explore the global heliosphere and in concert with Voyager 1 and Voyager 2 is discovering a fundamentally new and uncharted physical domain of the outer heliosphere. In parallel, Cassini/INCA maps the global heliosphere at energies ( 5-55 keV) above those measured by IBEX. The enigmatic IBEX ribbon and the INCA belt were unanticipated discoveries demonstrating that much of what we know or think we understand about the outer heliosphere needs to be revised. The global structure of the heliosphere is highly complex and influenced by competing factors ranging from the local interstellar magnetic field, suprathermal populations both within and beyond the heliopause, and the detailed flow properties of the LISM. Global heliospheric structure and microphysics in turn influences the acceleration of energetic particles and creates feedbacks that modify the interstellar interaction as a whole. The next quantum leap enabled by IMAP will open new windows on the frontier of Heliophysics and probe the acceleration of suprathermal and higher energy particles at a time when the space environment is rapidly evolving. IMAP ultimately connects the acceleration processes observed directly at 1 AU with unprecedented sensitivity and temporal resolution with the global structure of our heliosphere. The remarkable synergy between IMAP, Voyager 1 and Voyager 2 will remain for at least the next decade as Voyager 1 pushes further into the interstellar domain and Voyager 2 moves through the heliosheath. IMAP, like ACE before it, will be a keystone of the Heliophysics System Observatory by providing comprehensive energetic particle, pickup ion, suprathermal ion, neutral atom, solar wind, solar wind heavy ion, and magnetic field observations to diagnose

On the decades-long stability of the interstellar wind through the solar system

NASA Astrophysics Data System (ADS)

Lallement, R.; Bertaux, J. L.

2014-05-01

We have revisited the series of observations recently used to infer a temporal variation in the interstellar helium flow over the past forty years. Concerning the recent IBEX-Lo direct detection of helium neutrals, there are two types of precise and unambiguous measurements that do not rely on the exact response of the instrument: the count rate maxima as a function of the spin angle, which determines the ecliptic latitude of the flow, and the count rate maxima as a function of IBEX longitude, which determines a tight relationship between the ecliptic longitude of the flow and its velocity far from the Sun. These measurements provide parameters (and couples of parameters in the second case) that are remarkably similar to the canonical, old values. In contrast, the preferred choice of a lower velocity and higher longitude reported before from IBEX data is only based on the count rate variation (at each spin phase maximum) as a function of the satellite longitude, when drifting across the region of high fluxes. We have examined the consequences of dead-time counting effects and conclude that including them at a realistic level is sufficient to reconcile the data with the old parameters, calling for further investigations. We discuss the analyses of the STEREO pickup ion data and argue that the statistical method that has been preferred to infer the neutral flow longitude (instead of the more direct method based on the pickup ion maximum flux directions) is not appropriate. Moreover, transport effects may have been significant at the very weak solar activity level of 2007-2009, in which case the longitudes of the pickup ion maxima are only upper limits on the flow longitude. Finally, we found that using some flow longitude determinations based on UV glow data is not adequate. Based on this global study, and at variance with recent conclusions, we find no evidence for a temporal variability of the interstellar helium flow. This has implications for inner and outer

First Global Observations of the Interstellar Interaction from the Interstellar Boundary Explorer (Invited)

NASA Astrophysics Data System (ADS)

McComas, D. J.

2009-12-01

The Sun moves through the local interstellar medium, continuously emitting ionized, supersonic solar wind plasma and carving out a cavity in interstellar space, called the heliosphere. The Interstellar Boundary Explorer (IBEX) spacecraft has just completed the first all-sky maps of the interstellar interaction at the edge of the heliosphere, by imaging energetic neutral atoms (ENAs) emanating from this region. IBEX all-sky maps and energy spectra provide detailed information about the interaction. Our observations show globally distributed fluxes ordered by the solar wind structure, which are superposed by another, unexpected feature, which is neither seen by the Voyager spacecraft nor predicted by any current model or theory. This talk summarizes the IBEX observations, shares our unexpected results, and discusses some of the possible ideas for what may be missing in our current understanding of the heliosphere’s global interaction. IBEX Science Team: D.J. McComas1,2, F. Allegrini1,2, P. Bochsler3, M. Bzowski4, E.R. Christian5, G.B. Crew6, R. DeMajistre7, H. Fahr8, H. Fichtner9, P.C. Frisch10, H.O. Funsten11, S. A. Fuselier12, G. Gloeckler13, M. Gruntman14, J. Heerikhuisen15, V. Izmodenov16, P. Janzen17, P. Knappenberger18, S. Krimigis7,19, H. Kucharek20, M. Lee20, G. Livadiotis1, S. Livi1,2, R.J. MacDowall5, D. Mitchell7, E. Möbius20, T. Moore5, N.V. Pogorelov15, D. Reisenfeld17, E. Roelof7, L. Saul3, N.A. Schwadron21, P.W. Valek1,2, R. Vanderspek6, P. Wurz3, G.P. Zank15 (1)Southwest Research Institute, San Antonio, TX, USA (2) University of Texas at San Antonio, San Antonio, TX, USA (3)University of Bern, Physikalisches Institut, CH-3012 Bern, Switzerland (4)Space Research Centre of the Polish Academy of Sciences, Warsaw, Poland (5)NASA Goddard Space Flight Center, Greenbelt, MD, USA (6)Massachusetts Institute of Technology, Cambridge, MA, USA (7)Applied Physics Laboratory, Johns Hopkins University, Laurel, MD, USA (8)University of Bonn, Bonn, Germany (9)Ruhr

The antibody loci of the domestic goat (Capra hircus)

USDA-ARS?s Scientific Manuscript database

The domestic goat (Capra hircus) is an important ruminant species, both as a source of antibody-based reagents for research and biomedical applications, and as an economically important animal for agriculture, particularly for developing nations that maintain most of the global goat population. Char...

Genetic characterization of Meigu goat (Capra hircus) based on the mitochondrial DNA.

PubMed

Duan, Xiaoyue; Zhang, Hao; Li, Haijun; Niu, Lili; Wang, Linjie; Li, Li; Zhang, Hongping; Zhong, Tao

2016-01-01

Meigu goat (Capra hircus) is one of the indigenous goat breeds in China. Our research findings revealed that the entire mitochondrial genome of Meigu goat was 16,643 bp in length. The contents of A, C, T and G in the mitochondrial genome were 33.59%, 26.05%, 27.31% and 13.05%, respectively. The mitogenome of meigu goat contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and 1 control region. Components of the Meigu goat's mitogenome were similar to those of other Capra hircus in gene arrangement and composition. These results could provide essential information for molecular phylogenetic and evolutionary analyses of domestic goats.

Observational Evidence For The Comet-Like Heliosphere

NASA Astrophysics Data System (ADS)

Bzowski, M.; Czechowski, A.; Funsten, H. O.; Grygorczuk, J.; Heerikhuisen, J.; Kubiak, M. A.; Moebius, E.; McComas, D. J.; Schwadron, N.; Sokol, J. M.; Swaczyna, P.; Zirnstein, E.

2017-12-01

The shape of the heliosphere is a subject of ongoing debate. The traditional comet-like image has recently been challenged by ideas of croissant- or bubble-like forms. Here we seek to resolve this debate by confronting available observational evidence with global modeling. Several MHD models of a comet-like heliosphere were used to simulate the radius and center of the IBEX Ribbon to fit the direction and intensity of the interstellar magnetic field (ISMF). These models assumed the secondary ENA emission mechanism, which was recently strengthened due to direct measurement of the distance to the Ribbon source most likely just beyond the heliopause. The same mechanism explains the dependence of the Ribbon center position on energy due to the latitudinal structure of solar wind. The obtained ISMF vector agrees among these models and is consistent with the draped IMF measured by Voyager. Independently, we have shown by modeling that the Warm Breeze discovered by IBEX is naturally created in the outer heliosheath due to charge-exchange between interstellar He+ ions and He atoms. Now we simulate the Warm Breeze for various directions and intensities of the local IMF and we find that the simulation results are in best agreement with IBEX observations for the IMF vector obtained from the above-mentioned Ribbon analyses and Voyager measurements. These arguments, along with the co-planarity of the inflow directions of interstellar neutral H, He, O, and the Warm Breeze, directions of the Ribbon center and ISMF, as well as measurements of the plasma flow directions in the IHS by Voyager 2 indicate the existence of a common plane of approximate mirror symmetry of the heliosphere, defined by the directions of ISMF and the Sun's motion through the local interstellar medium. This suggests that the global structure of the outer heliosphere mostly results from the conditions in the local interstellar medium and the Sun's velocity. This evidence, obtained from very different

CIRCULARITY OF THE INTERSTELLAR BOUNDARY EXPLORER RIBBON OF ENHANCED ENERGETIC NEUTRAL ATOM (ENA) FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Funsten, H. O.; Higdon, D. M.; Larsen, B. A.

2013-10-10

As a sharp feature in the sky, the ribbon of enhanced energetic neutral atom (ENA) flux observed by the Interstellar Boundary Explorer (IBEX) mission is a key signature for understanding the interaction of the heliosphere and the interstellar medium through which we are moving. Over five nominal IBEX energy passbands (0.7, 1.1, 1.7, 2.7, and 4.3 keV), the ribbon is extraordinarily circular, with a peak location centered at ecliptic (λ{sub RC}, β{sub RC}) = (219.°2 ± 1.°3, 39.°9 ± 2.°3) and a half cone angle of φ{sub C} = 74.°5 ± 2.°0. A slight elongation of the ribbon, generally perpendicularmore » to the ribbon center-heliospheric nose vector and with eccentricity ∼0.3, is observed over all energies. At 4.3 keV, the ribbon is slightly larger and displaced relative to lower energies. For all ENA energies, a slice of the ribbon flux peak perpendicular to the circular arc is asymmetric and systematically skewed toward the ribbon center. We derive a spatial coherence parameter δ{sub C} ≤ 0.014 that characterizes the spatial uniformity of the ribbon over its extent in the sky and is a key constraint for understanding the underlying processes and structure governing the ribbon ENA emission.« less

A new class of long-term stable lunar resonance orbits: Space weather applications and the Interstellar Boundary Explorer

NASA Astrophysics Data System (ADS)

McComas, D. J.; Carrico, J. P.; Hautamaki, B.; Intelisano, M.; Lebois, R.; Loucks, M.; Policastri, L.; Reno, M.; Scherrer, J.; Schwadron, N. A.; Tapley, M.; Tyler, R.

2011-11-01

NASA's Interstellar Boundary Explorer (IBEX) mission was recently maneuvered into a unique long-term stable Earth orbit, with apogee at ˜50 Earth radii (RE). The Moon's (˜65 RE) gravity disrupts most highly elliptical Earth orbits, leading to (1) chaotic orbital solutions, (2) the inability to predict orbital positions more than a few years into the future, and ultimately (3) mission-ending possibilities of atmospheric reentry or escape from Earth orbit. By synchronizing the satellite's orbital period to integer fractions of the Moon's sidereal period, PM = 27.3 days (e.g., PM/2 = 13.6 days, PM/3 = 9.1 days), and phasing apogee to stay away from the Moon, very long term stability can be achieved. Our analysis indicates orbital stability for well over a decade, and these IBEX-like orbits represent a new class of Earth orbits that are stable far longer than typical satellite lifetimes. These orbits provide cost-effective and nearly ideal locations for long-term space weather observations from spacecraft that can remotely image the Earth's magnetosphere from outside its boundaries while simultaneously providing external (solar wind or magnetosheath) observation over most of their orbits. Utilized with multiple spacecraft, such orbits would allow continuous and simultaneous monitoring of the magnetosphere in order to help predict and mitigate adverse space weather-driven effects.

Modulation of ENA in the heliosphere

NASA Astrophysics Data System (ADS)

Bzowski, Maciej; Kubiak, Marzena; Czechowski, Andrzej

Energetic Neutral Atoms (ENA), an important part of heliospheric physics, have recently en-joyed an increased interest because of the breakthrough observations by the NASA SMEX mission IBEX. Generally, ENA appear as a product of charge exchange reaction between an energetic ion and a neutral gas atom. Being insensitive to electromagnetic forces, ENA run away freely from their birth sites and can carry information on the physical state of the parent plasma on (somewhat energy-dependent) distances well in excess of 100 AU. The ENA fluxes exhibit modulation due to time variations of their source function due to modulation of solar wind on time scales from days to solar cycle and due to large-scale variation in the latitude structure of the solar wind, as well as to the variations in the loss rate due to re-ionization. Once created, the ENA flux suffers losses mostly due to photoionization by solar EUV photons, but also to charge exchange and electron impact. We will review the variation of survival prob-ability of the ENA created in the inner heliosheath and observed by spacecraft on Mars, Earth, and Venus orbits (like Mars Express, IBEX, and Venus Express) and solar-cycle modulation of the radially-expanding spectral flux of ENA consisting of the solar wind protons and alpha particles transcharged on the neutral interstellar gas inside the heliosphere.

Bioaccumulation of metals and metalloids in medicinal plant Ipomoea pes-caprae from areas impacted by tsunami.

PubMed

Kozak, Lidia; Kokociński, Mikołaj; Niedzielski, Przemysław; Lorenc, Stanisław

2015-02-01

Tsunami events may have an enormous impact on the functioning of aquatic and terrestrial ecosystems by altering various relationships with biotic components. Concentrations of acid-leachable fractions of heavy metals and metalloids in soils and plant samples from areas affected by the December 2004 tsunami in Thailand were determined. Ipomoea pes-caprae, a common plant species growing along the seashore of this region, and frequently used in folk medicine, was selected to assess the presence of selected elements. Elevated amounts of Cd, Pb, Zn, and As in soil samples, and Pb, Zn, As, Se, Cr, and Ni in plant samples were determined from the tsunami-impacted regions for comparison with reference locations. The flowers of Ipomoea pes-caprae contained the highest amounts of these metals, followed by its leaves, and stems. In addition, its bioaccumulation factor (BAF) supports this capability of high metal uptake by Ipomoea pes-caprae from the areas affected by the tsunami in comparison with a reference site. This uptake was followed by the translocation of these elements to the various plant components. The presence of these toxic metals in Ipomoea pes-caprae growing in contaminated soils should be a concern of those who use this plant for medicinal purposes. Further studies on the content of heavy metals and metalloids in this plant in relation to human health concerns are recommended. © 2014 SETAC.

Staphylococcus caprae native mitral valve infective endocarditis.

PubMed

Kwok, T'ng Choong; Poyner, Jennifer; Olson, Ewan; Henriksen, Peter; Koch, Oliver

2016-10-01

Staphylococcus caprae is a rare cause of infective endocarditis. Here, we report a case involving the native mitral valve in the absence of an implantable cardiac electronic device. A 76-year-old man presented with a 2 week history of confusion and pyrexia. His past medical history included an open reduction and internal fixation of a humeral fracture 17 years previously, which remained non-united despite further revision 4 years later. There was no history of immunocompromise or farm-animal contact. Two sets of blood culture bottles, more than 12 h apart, were positive for S. caprae . Trans-thoracic echocardiography revealed a 1×1.2 cm vegetation on the mitral valve, with moderate mitral regurgitation. Due to ongoing confusion, he had a magnetic resonance imaging brain scan, which showed a subacute small vessel infarct consistent with a thromboembolic source. A humeral SPECT-CT (single-photon emission computerized tomography-computerized tomography) scan showed no clear evidence of acute osteomyelitis. Surgical vegetectomy and mitral-valve repair were considered to reduce the risk of further systemic embolism and progressive valve infection. However, the potential risks of surgery to this patient led to a decision to pursue a cure with antibiotic therapy alone. He remained well 3 months after discharge, with repeat echocardiography demonstrating a reduction in the size of the vegetation (0.9 cm). Management of this infection was challenging due to its rarity and its unclear progression, complicated by the dilemma surrounding surgical intervention in a patient with a complex medical background.

Heliospheric Observations of Energetic Particles

NASA Technical Reports Server (NTRS)

Summerlin, Errol J.

2011-01-01

Heliospheric observations of energetic particles have shown that, on long time averages, a consistent v^-5 power-law index arises even in the absence of transient events. This implies an ubiquitous acceleration process present in the solar wind that is required to generate these power-law tails and maintain them against adiabatic losses and coulomb-collisions which will cool and thermalize the plasma respectively. Though the details of this acceleration process are being debated within the community, most agree that the energy required for these tails comes from fluctuations in the magnetic field which are damped as the energy is transferred to particles. Given this source for the tail, is it then reasonable to assume that the turbulent LISM should give rise to such a power-law tail as well? IBEX observations clearly show a power-law tail of index approximately -5 in energetic neutral atoms. The simplest explanation for the origins of these ENAs are that they are energetic ions which have charge-exchanged with a neutral atom. However, this would imply that energetic ions possess a v^-5 power-law distribution at keV energies at the source of these ENAs. If the source is presumed to be the LISM, it provides additional options for explaining the, so called, IBEX ribbon. This presentation will discuss some of these options as well as potential mechanisms for the generation of a power-law spectrum in the LISM.

Resin glycoside constituents of Ipomoea pes-caprae (beach morning glory).

PubMed

Tao, Hongwen; Hao, Xiaojiang; Liu, Jinggen; Ding, Jian; Fang, Yuchun; Gu, Qianqun; Zhu, Weiming

2008-12-01

Eight new resin glycosides, pescapreins X-XVII (1-8), were isolated from a lipophilic fraction of an ethanol extract of the entire plant of beach morning glory, Ipomoea pes-caprae. Their structures were elucidated by spectroscopic data analysis and by chemical transformation. These compounds were evaluated biologically in terms of cancer cell line cytotoxicity, antibacterial and antifungal activity, and effects on the mu-opioid receptor.

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence.

PubMed

de la Fuente, José; Díez-Delgado, Iratxe; Contreras, Marinela; Vicente, Joaquín; Cabezas-Cruz, Alejandro; Tobes, Raquel; Manrique, Marina; López, Vladimir; Romero, Beatriz; Bezos, Javier; Dominguez, Lucas; Sevilla, Iker A; Garrido, Joseba M; Juste, Ramón; Madico, Guillermo; Jones-López, Edward; Gortazar, Christian

2015-11-01

Mycobacteria of the Mycobacterium tuberculosis complex (MTBC) greatly affect humans and animals worldwide. The life cycle of mycobacteria is complex and the mechanisms resulting in pathogen infection and survival in host cells are not fully understood. Recently, comparative genomics analyses have provided new insights into the evolution and adaptation of the MTBC to survive inside the host. However, most of this information has been obtained using M. tuberculosis but not other members of the MTBC such as M. bovis and M. caprae. In this study, the genome of three M. bovis (MB1, MB3, MB4) and one M. caprae (MB2) field isolates with different lesion score, prevalence and host distribution phenotypes were sequenced. Genome sequence information was used for whole-genome and protein-targeted comparative genomics analysis with the aim of finding correlates with phenotypic variation with potential implications for tuberculosis (TB) disease risk assessment and control. At the whole-genome level the results of the first comparative genomics study of field isolates of M. bovis including M. caprae showed that as previously reported for M. tuberculosis, sequential chromosomal nucleotide substitutions were the main driver of the M. bovis genome evolution. The phylogenetic analysis provided a strong support for the M. bovis/M. caprae clade, but supported M. caprae as a separate species. The comparison of the MB1 and MB4 isolates revealed differences in genome sequence, including gene families that are important for bacterial infection and transmission, thus highlighting differences with functional implications between isolates otherwise classified with the same spoligotype. Strategic protein-targeted analysis using the ESX or type VII secretion system, proteins linking stress response with lipid metabolism, host T cell epitopes of mycobacteria, antigens and peptidoglycan assembly protein identified new genetic markers and candidate vaccine antigens that warrant further study to

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence

PubMed Central

de la Fuente, José; Díez-Delgado, Iratxe; Contreras, Marinela; Vicente, Joaquín; Cabezas-Cruz, Alejandro; Tobes, Raquel; Manrique, Marina; López, Vladimir; Romero, Beatriz; Bezos, Javier; Dominguez, Lucas; Sevilla, Iker A.; Garrido, Joseba M.; Juste, Ramón; Madico, Guillermo; Jones-López, Edward; Gortazar, Christian

2015-01-01

Mycobacteria of the Mycobacterium tuberculosis complex (MTBC) greatly affect humans and animals worldwide. The life cycle of mycobacteria is complex and the mechanisms resulting in pathogen infection and survival in host cells are not fully understood. Recently, comparative genomics analyses have provided new insights into the evolution and adaptation of the MTBC to survive inside the host. However, most of this information has been obtained using M. tuberculosis but not other members of the MTBC such as M. bovis and M. caprae. In this study, the genome of three M. bovis (MB1, MB3, MB4) and one M. caprae (MB2) field isolates with different lesion score, prevalence and host distribution phenotypes were sequenced. Genome sequence information was used for whole-genome and protein-targeted comparative genomics analysis with the aim of finding correlates with phenotypic variation with potential implications for tuberculosis (TB) disease risk assessment and control. At the whole-genome level the results of the first comparative genomics study of field isolates of M. bovis including M. caprae showed that as previously reported for M. tuberculosis, sequential chromosomal nucleotide substitutions were the main driver of the M. bovis genome evolution. The phylogenetic analysis provided a strong support for the M. bovis/M. caprae clade, but supported M. caprae as a separate species. The comparison of the MB1 and MB4 isolates revealed differences in genome sequence, including gene families that are important for bacterial infection and transmission, thus highlighting differences with functional implications between isolates otherwise classified with the same spoligotype. Strategic protein-targeted analysis using the ESX or type VII secretion system, proteins linking stress response with lipid metabolism, host T cell epitopes of mycobacteria, antigens and peptidoglycan assembly protein identified new genetic markers and candidate vaccine antigens that warrant further study to

NEUTRAL ATOM PROPERTIES IN THE DIRECTION OF THE IBEX RIBBON

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heerikhuisen, Jacob; Pogorelov, Nikolai V.; Gamayunov, Konstantin V.

2016-11-10

In this paper, we present results from our three-dimensional (3D) simulations of the interaction between the solar wind and local interstellar medium with an emphasis on the phase-space properties of energetic neutral atoms (ENAs) along a sight line that intersects the ribbon of enhanced ENA flux seen by NASA’s Interstellar Boundary EXplorer spacecraft. The majority of these ENAs have velocities directed away from the heliosphere, but it is believed that interactions between heliospheric ENAs and ions outside the heliosphere may result in a population of secondary ENAs that return to the heliosphere and generate the ribbon. While we do notmore » consider the ion dynamics that result in secondary ENAs, our analysis is of key importance to the process since the heliospheric ENAs we consider form the source population for those ions. We present the moments of the hydrogen distribution, along with moments parallel and perpendicular to the local magnetic field for the pick-up ions (PUIs) that these neutrals generate. Finally, we present gyro-averaged velocity distributions relative to the local magnetic field for the PUIs created from our simulated H-atoms, along with analytic fits to these distributions in the secondary ENA source region just beyond the heliopause.« less

A New Model for the Heliosphere’s “IBEX Ribbon”

NASA Astrophysics Data System (ADS)

Giacalone, J.; Jokipii, J. R.

2015-10-01

We present a model for the narrow, ribbon-like enhancement in the emission of ∼keV energetic neutral atoms (ENA) coming from the outer heliosphere, coinciding roughly with the plane of the very local interstellar magnetic field (LISMF). We show that the pre-existing turbulent LISMF has sufficient amplitude in magnitude fluctuations to efficiently trap ions with initial pitch-angles near 90°, primarily by magnetic mirroring, leading to a narrow region of enhanced pickup-proton intensity. The pickup protons interact with cold interstellar hydrogen to produce ENAs seen at 1 AU. The computed width of the resulting ribbon of emission is consistent with observations. We also present results from a numerical model that are also generally consistent with the observations. Our interpretation relies only on the pre-existing turbulent interstellar magnetic field to trap the pickup protons. This leads to a broader local pitch-angle distribution compared to that of a ring. Our numerical model also predicts that the ribbon is double-peaked with a central depression. This is a further consequence of the (primarily) magnetic mirroring of pickup ions with pitch-angles close to 90° in the pre-existing, turbulent interstellar magnetic field.

A NEW MODEL FOR THE HELIOSPHERE’S “IBEX RIBBON”

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giacalone, J.; Jokipii, J. R.

We present a model for the narrow, ribbon-like enhancement in the emission of ∼keV energetic neutral atoms (ENA) coming from the outer heliosphere, coinciding roughly with the plane of the very local interstellar magnetic field (LISMF). We show that the pre-existing turbulent LISMF has sufficient amplitude in magnitude fluctuations to efficiently trap ions with initial pitch-angles near 90°, primarily by magnetic mirroring, leading to a narrow region of enhanced pickup-proton intensity. The pickup protons interact with cold interstellar hydrogen to produce ENAs seen at 1 AU. The computed width of the resulting ribbon of emission is consistent with observations. Wemore » also present results from a numerical model that are also generally consistent with the observations. Our interpretation relies only on the pre-existing turbulent interstellar magnetic field to trap the pickup protons. This leads to a broader local pitch-angle distribution compared to that of a ring. Our numerical model also predicts that the ribbon is double-peaked with a central depression. This is a further consequence of the (primarily) magnetic mirroring of pickup ions with pitch-angles close to 90° in the pre-existing, turbulent interstellar magnetic field.« less

Long-Distance Dispersal by Sea-Drifted Seeds Has Maintained the Global Distribution of Ipomoea pes-caprae subsp. brasiliensis (Convolvulaceae)

PubMed Central

Miryeganeh, Matin; Takayama, Koji; Tateishi, Yoichi; Kajita, Tadashi

2014-01-01

Ipomoea pes-caprae (Convolvulaceae), a pantropical plant with sea-drifted seeds, is found globally in the littoral areas of tropical and subtropical regions. Unusual long-distance seed dispersal has been believed to be responsible for its extraordinarily wide distribution; however, the actual level of inter-population migration has never been studied. To clarify the level of migration among populations of I. pes-caprae across its range, we investigated nucleotide sequence variations by using seven low-copy nuclear markers and 272 samples collected from 34 populations that cover the range of the species. We applied coalescent-based approaches using Bayesian and maximum likelihood methods to assess migration rates, direction of migration, and genetic diversity among five regional populations. Our results showed a high number of migrants among the regional populations of I. pes-caprae subsp. brasiliensis, which suggests that migration among distant populations was maintained by long-distance seed dispersal across its global range. These results also provide strong evidence for recent trans-oceanic seed dispersal by ocean currents in all three oceanic regions. We also found migration crossing the American continents. Although this is an apparent land barrier for sea-dispersal, migration between populations of the East Pacific and West Atlantic regions was high, perhaps because of trans-isthmus migration via pollen dispersal. Therefore, the migration and gene flow among populations across the vast range of I. pes-caprae is maintained not only by seed dispersal by sea-drifted seeds, but also by pollen flow over the American continents. On the other hand, populations of subsp. pes-caprae that are restricted to only the northern part of the Indian Ocean region were highly differentiated from subsp. brasiliensis. Cryptic barriers that prevented migration by sea dispersal between the ranges of the two subspecies and/or historical differentiation that caused local adaptation

The solar wind as a possible source of fast temporal variations of the heliospheric ribbon

DOE PAGES

Kucharek, H.; Fuselier, S. A.; Wurz, P.; ...

2013-10-04

Here we present a possible source of pickup ions (PUIs) the ribbon observed by the Interstellar Boundary EXplorer (IBEX). We suggest that a gyrating solar wind and PUIs in the ramp and in the near downstream region of the termination shock (TS) could provide a significant source of energetic neutral atoms (ENAs) in the ribbon. A fraction of the solar wind and PUIs are reflected and energized during the first contact with the TS. Some of the solar wind may be reflected propagating toward the Sun but most of the solar wind ions form a gyrating beam-like distribution that persistsmore » until it is fully thermalized further downstream. Depending on the strength of the shock, these gyrating distributions can exist for many gyration periods until they are scattered/thermalized due to wave-particle interactions at the TS and downstream in the heliosheath. During this time, ENAs can be produced by charge exchange of interstellar neutral atoms with the gyrating ions. In order to determine the flux of energetic ions, we estimate the solar wind flux at the TS using pressure estimates inferred from in situ measurements. Assuming an average path length in the radial direction of the order of a few AU before the distribution of gyrating ions is thermalized, one can explain a significant fraction of the intensity of ENAs in the ribbon observed by IBEX. In conclusion, with a localized source and such a short integration path, this model would also allow fast time variations of the ENA flux.« less

Environmental Impact Specification for Direct Space Weathering of Kuiper Belt and Oort Cloud Objects

NASA Technical Reports Server (NTRS)

Cooper, John F.

2010-01-01

The Direct Space Weathering Project of NASA's Outer Planets Research Program addresses specification of the plasma and energetic particle environments for irradiation and surface chemical processing of icy bodies in the outer solar system and the local interstellar medium. Knowledge of the radiation environments is being expanded by ongoing penetration of the twin Voyager spacecraft into the heliosheath boundary region of the outer heliosphere and expected emergence within the next decade into the very local interstellar medium. The Voyager measurements are being supplemented by remote sensing from Earth orbit of energetic neutral atom emission from this boundary region by NASA's Interstellar Boundary Explorer (IBEX). Although the Voyagers long ago passed the region of the Classical Kuiper Belt, the New Horizons spacecraft will encounter Pluto in 2015 and thereafter explore one or more KBOs, meanwhile providing updated measurements of the heliospheric radiation environment in this region. Modeling of ion transport within the heliosphere allows specification of time-integrated irradiation effects while the combination of Voyager and IBEX data supports projection of the in-situ measurements into interstellar space beyond the heliosheath. Transformation of model ion flux distributions into surface sputtering and volume ionization profiles provides a multi-layer perspective for space weathering impact on the affected icy bodies and may account for some aspects of color and compositional diversity. Other important related factors may include surface erosion and gardening by meteoritic impacts and surface renewal by cryovolcanism. Chemical products of space weathering may contribute to energy resources for the latter.

Long-Term Assessment of Wild Boar Harvesting and Cattle Removal for Bovine Tuberculosis Control in Free Ranging Populations

PubMed Central

Mentaberre, Gregorio; Romero, Beatriz; de Juan, Lucía; Navarro-González, Nora; Velarde, Roser; Mateos, Ana; Marco, Ignasi; Olivé-Boix, Xavier; Domínguez, Lucas; Lavín, Santiago; Serrano, Emmanuel

2014-01-01

Wild boar is a recognized reservoir of bovine tuberculosis (TB) in the Mediterranean ecosystems, but information is scarce outside of hotspots in southern Spain. We describe the first high-prevalence focus of TB in a non-managed wild boar population in northern Spain and the result of eight years of TB management. Measures implemented for disease control included the control of the local wild boar population through culling and stamping out of a sympatric infected cattle herd. Post-mortem inspection for detection of tuberculosis-like lesions as well as cultures from selected head and cervical lymph nodes was done in 745 wild boar, 355 Iberian ibexes and five cattle between 2004 and 2012. The seasonal prevalence of TB reached 70% amongst adult wild boar and ten different spoligotypes and 13 MIRU-VNTR profiles were detected, although more than half of the isolates were included in the same clonal complex. Only 11% of infected boars had generalized lesions. None of the ibexes were affected, supporting their irrelevance in the epidemiology of TB. An infected cattle herd grazed the zone where 168 of the 197 infected boars were harvested. Cattle removal and wild boar culling together contributed to a decrease in TB prevalence. The need for holistic, sustained over time, intensive and adapted TB control strategies taking into account the multi-host nature of the disease is highlighted. The potential risk for tuberculosis emergence in wildlife scenarios where the risk is assumed to be low should be addressed. PMID:24558435

First report of a Staphylococcus caprae isolated from middle ear fluid of an infant with recurrent acute otitis media.

PubMed

Mazur, Elżbieta; Żychowski, Piotr; Juda, Marek; Korona-Głowniak, Izabela; Niedzielska, Grażyna; Malm, Anna; Kozioł-Montewka, Maria

2017-09-21

Staphylococcus caprae was originally isolated from goat milk. This uncommon coagulase-negative staphylococcus, usually associated with animals, has only infrequently been detected in human clinical specimens. Its association with acute otitis media has not been demonstrated so far. The study reports the first isolation of S. caprae from the middle ear fluid of a 12-month-old infant with recurrent, bilateral acute otitis media. Biochemical traits and susceptibility pattern of the isolated strain are also presented.

Pentasaccharide resin glycosides from Ipomoea pes-caprae.

PubMed

Yu, Bang-Wei; Luo, Jian-Guang; Wang, Jun-Song; Zhang, Dong-Ming; Yu, Shi-Shan; Kong, Ling-Yi

2011-04-25

Pescapreins XXI-XXX (1-10), pentasaccharide resin glycosides, together with the known pescapreins I-IV and stoloniferin III were isolated from the aerial parts of Ipomoea pes-caprae (beach morning-glory). The pescapreins are macrolactones of simonic acid B, partially esterified with different fatty acids. The lactonization site of the aglycone, jalapinolic acid, was located at C-2 or C-3 of the second saccharide moiety. Their structures were established by a combination of spectroscopic and chemical methods. Compounds 1-10 were evaluated for their potential to modulate multidrug resistance in the human breast cancer cell line MCF-7/ADR. The combined use of these new compounds at a concentration of 5 μg/mL increased the cytotoxicity of doxorubicin by 1.5-3.7-fold.

Inactivation of Mycobacterium bovis ssp. caprae in high-temperature, short-term pasteurized pilot-plant milk.

PubMed

Hammer, P; Richter, E; Rüsch-Gerdes, S; Walte, H-G C; Matzen, S; Kiesner, C

2015-03-01

Experiments to determine the efficacy of high temperature, short time (HTST) pasteurization of milk in terms of inactivation of pathogenic microorganisms were mainly performed between 1930 and 1960. Among the target organisms were Mycobacterium bovis and Mycobacterium tuberculosis. As a result, the Codex Alimentarius prescribes that HTST treatment of milk should lead to a significant reduction of pathogenic microorganisms during milk pasteurization. Due to the development of improved methods for the detection of survivors and of more advanced heating technology, verification of this requirement seemed to be necessary. To address recent outbreaks of tuberculosis in cattle caused by M. bovis ssp. caprae (M. caprae) in the southern regions of Germany, this organism was tested and compared with M. bovis ssp. bovis (M. bovis). Experiments were performed in a pilot plant for HTST pasteurization of milk with 3 strains of M. caprae and 1 strain of M. bovis. In preliminary trials at a fixed holding time of 25 s, the temperature at which significant inactivation occurred was 62.5°C for all strains. To determine D-values (decimal reduction times) for the inactivation kinetics, the strains were tested at 65, 62.5, and 60°C at holding times of 16.5, 25, and 35 s. At 65°C, the D-values of all strains ranged from 6.8 to 7.8 s, and at 62.5°C, D-values ranged from 14.5 to 18.1 s. Low inactivation was observed at 60°C. When the low slope of the inactivation curve allowed calculation of a D-value, these ranged from 40.8 to 129.9 s. In terms of log10 reductions, the highest values for all strains were 4.1 to 4.9 log at 65°C, with a holding time of 35 s. The tested strains of M. caprae and M. bovis showed similar low resistance to heat. Standard HTST treatment should result in a high reduction of these organisms and thus the requirements of the Codex Alimentarius for inactivation of pathogens by this process are far exceeded. Copyright © 2015 American Dairy Science Association

Indeterministic metaphors: The popular science books of Fritjof Capra and Gary Zukav.

PubMed

Smith, Bradon Tl

2013-07-01

In the popular accounts of the new physics (i.e. relativity and quantum mechanics) by Fritjof Capra and Gary Zukav, the new physics is represented as fatally undermining the universal determinism associated with Newton and Laplace. This paper explores how different metaphors - anthropomorphic metaphors, metaphors of exploration and mapping, and metaphors of shadows - are used strategically by these writers to advance this characterisation of the new physics as indeterministic.

Limited improvement of incorporating primary circulating prostate cells with the CAPRA score to predict biochemical failure-free outcome of radical prostatectomy for prostate cancer.

PubMed

Murray, Nigel P; Aedo, Socrates; Fuentealba, Cynthia; Jacob, Omar; Reyes, Eduardo; Novoa, Camilo; Orellana, Sebastian; Orellana, Nelson

2016-10-01

To establish a prediction model for early biochemical failure based on the Cancer of the Prostate Risk Assessment (CAPRA) score, the presence or absence of primary circulating prostate cells (CPC) and the number of primary CPC (nCPC)/8ml blood sample is detected before surgery. A prospective single-center study of men who underwent radical prostatectomy as monotherapy for prostate cancer. Clinical-pathological findings were used to calculate the CAPRA score. Before surgery blood was taken for CPC detection, mononuclear cells were obtained using differential gel centrifugation, and CPCs identified using immunocytochemistry. A CPC was defined as a cell expressing prostate-specific antigen and P504S, and the presence or absence of CPCs and the number of cells detected/8ml blood sample was registered. Patients were followed up for up to 5 years; biochemical failure was defined as a prostate-specific antigen>0.2ng/ml. The validity of the CAPRA score was calibrated using partial validation, and the fractional polynomial Cox proportional hazard regression was used to build 3 models, which underwent a decision analysis curve to determine the predictive value of the 3 models with respect to biochemical failure. A total of 267 men participated, mean age 65.80 years, and after 5 years of follow-up the biochemical-free survival was 67.42%. The model using CAPRA score showed a hazards ratio (HR) of 5.76 between low and high-risk groups, that of CPC with a HR of 26.84 between positive and negative groups, and the combined model showed a HR of 4.16 for CAPRA score and 19.93 for CPC. Using the continuous variable nCPC, there was no improvement in the predictive value of the model compared with the model using a positive-negative result of CPC detection. The combined CAPRA-nCPC model showed an improvement of the predictive performance for biochemical failure using the Harrell׳s C concordance test and a net benefit on DCA in comparison with either model used separately. The use of

Latittudinal and energy dependence of energetic neutral atom spectral indices measured by the Interstellar Boundary Explorer

DOE PAGES

Desai, M. I.; Allegrini, F.; Dayeh, M. A.; ...

2015-03-30

Here, we investigate the latitudinal and energy dependence of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 3 yrs of the mission. Our results are: (1) the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ~2.29 and ~3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. (2) The latitudinal dependence of the spectral indices at different energies can be represented bymore » the cosine function γ =a 0 + a 1 cos (a 2θ) with unique offsets, amplitudes, and phase angles; the higher energy ENA indices transition to successively larger amplitudes within ±45° of the equator. The results confirm the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere. And while earlier studies showed that the ~0.5-6 keV globally distributed ENA spectral indices could be represented as single power laws over much of the sky, our new results indicate that this is an over-simplification because the spectral indices have an energy and latitude dependence. Furthermore, this dependence is an important factor that must be taken into consideration by models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.« less

Latitudinal and Energy Dependence of Energetic Neutral Atom Spectral Indices Measured by the Interstellar Boundary Explorer

NASA Astrophysics Data System (ADS)

Desai, M. I.; Allegrini, F.; Dayeh, M. A.; Funsten, H.; Heerikhuisen, J.; McComas, D. J.; Fuselier, S. A.; Pogorelov, N.; Schwadron, N. A.; Zank, G. P.; Zirnstein, E. J.

2015-04-01

We investigate the latitudinal and energy dependence of the globally distributed 0.5-6 keV energetic neutral atom (ENA) spectra measured by the Interstellar Boundary Explorer (IBEX) during the first 3 yrs of the mission. Our results are: (1) the ENA spectral indices at the two lowest energies (0.89 and 1.47 keV) exhibit no clear trend with ecliptic latitude θ, while those at ˜2.29 and ˜3.41 keV exhibit a clear latitudinal pattern; flatter spectra occur above 60° latitude and steeper spectra occur ±30° of the equator. (2) The latitudinal dependence of the spectral indices at different energies can be represented by the cosine function γ ={{a}0}+{{a}1}cos ({{a}2}θ ) with unique offsets, amplitudes, and phase angles; the higher energy ENA indices transition to successively larger amplitudes within ±45° of the equator. Our results confirm the previously reported latitudinal organization of the ENA spectra and their remarkable similarity to that of the solar wind (SW) speed observed by Ulysses in the inner heliosphere. While earlier studies showed that the ˜0.5-6 keV globally distributed ENA spectral indices could be represented as single power laws over much of the sky, our new results indicate that this is an over-simplification because the spectral indices have an energy and latitude dependence. This dependence is an important factor that must be taken into consideration by models and simulations that seek to map the IBEX ENA observations back to the latitudinal profile of the SW speed structure observed in the inner heliosphere.

Atmospheric and spectroscopic research in the far infrared

NASA Technical Reports Server (NTRS)

Park, Kwangjai; Radostitz, James V.

1992-01-01

The University of Oregon (UO) has been a major participant in the development of far infrared spectroscopic research of the stratosphere for the purpose of understanding the ozone layer processes. The UO has had a 15-year collaboration with the Italian group of B. Carli, and have participated in the 1978/79 Sub-millimeter Infrared Balloon Experiment (SIBEX), in the Balloon Intercomparison Campaign, (BIC), in the Infrared Balloon Experiment (IBEX), and in the recently concluded Far Infrared Experiment for UARS Correlative Measurements (FIREX). Both IBEX and FIREX programs were conducted in collaboration with NASA Langley, and were designed as validation flights in support of the Upper Atmosphere Research Satellite (UARS) Program. The technique of atmospheric far infrared spectroscopy offers two important advantages. First, many chemically important species can be measured simultaneously and co-spatially in the atmosphere. Second, far infrared atmospheric spectra can be obtained in thermal emission without reference to the sun's position, enabling full diurnal and global coverage. Recent improvements in instrumentation, field measurements, and molecular concentration retrieval techniques are now making the far infrared a mature measurement technology. This work to date has largely focused on balloon-based studies, but the future efforts will focus also on satellite-based experiments. A program of research in the following general areas was proposed: Laboratory Pressure broadening coefficient studies; specialized detector system assembly and testing; and consultation and assistance with instrument and field support. The proposal was approved and a three-year research grant titled 'Atmospheric and Spectroscopic Research in the Far Infrared' was awarded. A summary of technical accomplishments attained during the grant period are presented.

Bacteriological diagnosis and molecular strain typing of Mycobacterium bovis and Mycobacterium caprae.

PubMed

Gormley, E; Corner, L A L; Costello, E; Rodriguez-Campos, S

2014-10-01

The primary isolation of a Mycobacterium sp. of the Mycobacterium tuberculosis complex from an infected animal provides a definitive diagnosis of tuberculosis. However, as Mycobacterium bovis and Mycobacterium caprae are difficult to isolate, particularly for animals in the early stages of disease, success is dependent on the optimal performance of all aspects of the bacteriological process, from the initial choice of tissue samples at post-mortem examination or clinical samples, to the type of media and conditions used to cultivate the microorganism. Each step has its own performance characteristics, which can contribute to sensitivity and specificity of the procedure, and may need to be optimized in order to achieve the gold standard diagnosis. Having isolated the slow-growing mycobacteria, species identification and fine resolution strain typing are keys to understanding the epidemiology of the disease and to devise strategies to limit transmission of infection. New technologies have emerged that can now even discriminate different isolates from the same animal. In this review we highlight the key factors that contribute to the accuracy of bacteriological diagnosis of M. bovis and M. caprae, and describe the development of advanced genotyping techniques that are increasingly used in diagnostic laboratories for the purpose of supporting detailed epidemiological investigations. Copyright © 2014 Elsevier Ltd. All rights reserved.

Biology and impacts of Pacific island invasive species: Capra hircus, the feral goat, (Mammalia: Bovidae)

Treesearch

Mark W. Chynoweth; Creighton M. Litton; Christopher A. Lepczyk; Steven C. Hess; Susan Cordell

2013-01-01

Domestic goats, Capra hircus, were intentionally introduced to numerous oceanic islands beginning in the sixteenth century. The remarkable ability of C. hircus to survive in a variety of conditions has enabled this animal to become feral and impact native ecosystems on islands throughout the world. Direct ecological impacts...

Experimental Model of Tuberculosis in the Domestic Goat after Endobronchial Infection with Mycobacterium caprae ▿

PubMed Central

Pérez de Val, Bernat; López-Soria, Sergio; Nofrarías, Miquel; Martín, Maite; Vordermeier, H. Martin; Villarreal-Ramos, Bernardo; Romera, Nadine; Escobar, Manel; Solanes, David; Cardona, Pere-Joan; Domingo, Mariano

2011-01-01

Caprine tuberculosis (TB) has increased in recent years, highlighting the need to address the problem the infection poses in goats. Moreover, goats may represent a cheaper alternative for testing of prototype vaccines in large ruminants and humans. With this aim, a Mycobacterium caprae infection model has been developed in goats. Eleven 6-month-old goats were infected by the endobronchial route with 1.5 × 103 CFU, and two other goats were kept as noninfected controls. The animals were monitored for clinical and immunological parameters throughout the experiment. After 14 weeks, the goats were euthanized, and detailed postmortem analysis of lung lesions was performed by multidetector computed tomography (MDCT) and direct observation. The respiratory lymph nodes were also evaluated and cultured for bacteriological analysis. All infected animals were positive in a single intradermal comparative cervical tuberculin (SICCT) test at 12 weeks postinfection (p.i.). Gamma interferon (IFN-γ) antigen-specific responses were detected from 4 weeks p.i. until the end of the experiment. The humoral response to MPB83 was especially strong at 14 weeks p.i. (13 days after SICCT boost). All infected animals presented severe TB lesions in the lungs and associated lymph nodes. M. caprae was recovered from pulmonary lymph nodes in all inoculated goats. MDCT allowed a precise quantitative measure of TB lesions. Lesions in goats induced by M. caprae appeared to be more severe than those induced in cattle by M. bovis over a similar period of time. The present work proposes a reliable new experimental animal model for a better understanding of caprine tuberculosis and future development of vaccine trials in this and other species. PMID:21880849

IBEX-lo Sky Maps of Secondary Interstellar Neutrals Helium and Oxygen

NASA Astrophysics Data System (ADS)

Kucharek, H.; Isenberg, P. A.; Jeewoo, P.; Kubiak, M. A.; Bzowski, M.

2017-12-01

There are several populations of heliospheric energetic neutral atoms (ENAs) generated at the various heliospheric interfaces, the inner heliosheath, outer heliosheath (OHS), and the termination shock (TS). Depending on where and how these ENAs are generated, they belong to different energy regimes. While interstellar neutral (ISN) particles flow through the heliospheric boundary is mostly unimpeded, a substantial fraction of ISN H and O is filtered through charge exchange with ambient plasma ions before reaching the TS. Secondary ISN atoms are generated by the charge exchange reaction between primary ISN atoms and interstellar ions in the outer heliosheath, forming walls of H and O in front of the heliopause (HP). The flowing interstellar plasma encounters the heliopause as an obstacle, which deflects the flow. Thus, secondary neutrals measured at 1 AU carry information about the deflected interstellar plasma and the shape of the heliopause that causes the deflection. Due to very different magnitudes of charge exchange cross sections, the main source of the secondary He is charge exchange with the OHS He+, while that of the secondary O is the charge exchange between interstellar O+ and the OHS H. Therefore, the oxygen results are drastically different from those of helium. Interstellar O+ ions behave in principle like the He+ particles with an over-density due to the plasma deceleration. The high density decelerated oxygen ions just upwind of the heliopause encounter an over-density in neutral hydrogen, the hydrogen wall, allowing frequent charge exchange that produce slow neutral oxygen atoms forming the oxygen wall. Thus, the distribution in the sky maps of secondary He and O carries information on the shape as well as the structures in front of it. To investigate the secondary component of the interstellar neutral in detail we have distinguish between the two secondary component's. We engaged theory and simulations for the primary and secondary components to determine differences of between measurements and model predicted data.

Connection of the solar wind with the interstellar medium through numerical modeling

DOE PAGES

Heerikhuisen, J.; Zirnstein, E.; Kawamura, A. D.; ...

2013-06-13

In this article we investigate the interaction between the solar wind (SW) and the local interstellar medium (LISM) using spacecraft data and numerical simulations. In particular, we focus on neutral atom results from NASA's Interstellar Boundary EXplorer (IBEX) mission, and compare these with implementations of our neutral atom models that look at both the energetic neutral atoms (ENAs) which are created as hydrogen of LISM origin interacts with the heliosphere, as well as the transmission of interstellar Oxygen through the heliospheric interface. Lastly, the goal of this work is to better understand the global structure of the heliosphere and itsmore » interaction with the galaxy.« less

The heliosphere's interstellar interaction: no bow shock.

PubMed

McComas, D J; Alexashov, D; Bzowski, M; Fahr, H; Heerikhuisen, J; Izmodenov, V; Lee, M A; Möbius, E; Pogorelov, N; Schwadron, N A; Zank, G P

2012-06-08

As the Sun moves through the local interstellar medium, its supersonic, ionized solar wind carves out a cavity called the heliosphere. Recent observations from the Interstellar Boundary Explorer (IBEX) spacecraft show that the relative motion of the Sun with respect to the interstellar medium is slower and in a somewhat different direction than previously thought. Here, we provide combined consensus values for this velocity vector and show that they have important implications for the global interstellar interaction. In particular, the velocity is almost certainly slower than the fast magnetosonic speed, with no bow shock forming ahead of the heliosphere, as was widely expected in the past.

Standardizing the double-observer survey method for estimating mountain ungulate prey of the endangered snow leopard.

PubMed

Suryawanshi, Kulbhushansingh R; Bhatnagar, Yash Veer; Mishra, Charudutt

2012-07-01

Mountain ungulates around the world have been threatened by illegal hunting, habitat modification, increased livestock grazing, disease and development. Mountain ungulates play an important functional role in grasslands as primary consumers and as prey for wild carnivores, and monitoring of their populations is important for conservation purposes. However, most of the several currently available methods of estimating wild ungulate abundance are either difficult to implement or too expensive for mountainous terrain. A rigorous method of sampling ungulate abundance in mountainous areas that can allow for some measure of sampling error is therefore much needed. To this end, we used a combination of field data and computer simulations to test the critical assumptions associated with double-observer technique based on capture-recapture theory. The technique was modified and adapted to estimate the populations of bharal (Pseudois nayaur) and ibex (Capra sibirica) at five different sites. Conducting the two double-observer surveys simultaneously led to underestimation of the population by 15%. We therefore recommend separating the surveys in space or time. The overall detection probability for the two observers was 0.74 and 0.79. Our surveys estimated mountain ungulate populations (± 95% confidence interval) of 735 (± 44), 580 (± 46), 509 (± 53), 184 (± 40) and 30 (± 14) individuals at the five sites, respectively. A detection probability of 0.75 was found to be sufficient to detect a change of 20% in populations of >420 individuals. Based on these results, we believe that this method is sufficiently precise for scientific and conservation purposes and therefore recommend the use of the double-observer approach (with the two surveys separated in time or space) for the estimation and monitoring of mountain ungulate populations.

Probing the Structure of Our Solar System's Edge

NASA Astrophysics Data System (ADS)

Hensley, Kerry

2018-02-01

The boundary between the solar wind and the interstellar medium (ISM) at the distant edge of our solar system has been probed remotely and directly by spacecraft, but questions about its properties persist. What can models tell us about the structure of this region?The Heliopause: A Dynamic BoundarySchematic illustrating different boundaries of our solar system and the locations of the Voyager spacecraft. [Walt Feimer/NASA GSFCs Conceptual Image Lab]As our solar system travels through interstellar space, the magnetized solar wind flows outward and pushes back on the oncoming ISM, forming a bubble called the heliosphere. The clash of plasmas generates a boundary region called the heliopause, the shape of which depends strongly on the properties of the solar wind and the local ISM.Much of our understanding of the outer heliosphere and the local ISM comes from observations made by the International Boundary Explorer (IBEX) and the Voyager 1 and Voyager 2 spacecraft. IBEX makes global maps of the flux of neutral atoms, while Voyagers 1 and 2 record the plasma density and magnetic field parameters along their trajectories as they exit the solar system. In order to interpret the IBEX and Voyager observations, astronomers rely on complex models that must capture both global and local effects.Simulations of the plasma density in the meridional plane of the heliosphere due to the interaction of the solar wind with the ISM for the case of a relatively dense ISM with a weak magnetic field. [Adapted from Pogorelov et al. 2017]Modeling the Edge of the Solar SystemIn this study, Nikolai Pogorelov (University of Alabama in Huntsville) and collaborators use a hybrid magneto-hydrodynamical (MHD) and kinetic simulation to capture fully the physical processes happening in the outer heliosphere.MHD models have been used to understand many aspects of plasma flow in the heliosphere. However, they struggle to capture processes that are better described kinetically, like charge exchange

A New Vision of Science and Strategy for an Interstellar Probe Mission

NASA Astrophysics Data System (ADS)

Gruntman, M.; McNutt, R. L.; Krimigis, S. M.; Wimmer-Schweingruber, R. F.; Gold, R. E.

2011-12-01

The recent in-situ and remote observations from the Voyager Interstellar Mission (VIM), the Interstellar Boundary Explorer (IBEX), and Ion and Neutral Camera (INCA) Cassini have revealed the interaction of the heliosphere with the very local interstellar medium (VLISM) to be much more complex than described by our present day concepts. These discoveries call for a major revision of the strategy for the Interstellar Probe, a mission to explore the interstellar medium surrounding the Solar System. Voyager 1 and Voyager 2 continue to reveal unanticipated flow patterns and significant fluxes of energetic particles in the heliosheath (beyond the solar wind termination shock) while pointing to a more remote location for the modulation region and source of the anomalous cosmic rays (ACRs). Remarkably, Voyager 1 has been reporting near-zero plasma flows (10's of km/s) beyond 115 AU for over the past year. One implication of this flow stagnation is that Voyager is already in a "transition layer" that could lead to the interstellar plasma. Consequently an Interstellar Probe Mission may "punch out" into the deflected interstellar plasma flow at a much smaller distance than previous models had predicted. Global imaging observations by IBEX and INCA of energetic neutral atoms (ENAs) originating from the interaction region(s) of the solar wind and the VLISM show unexpected structure and possible time dependence on a variety of scales. In addition to the general "glow" of the sky in ENAs, IBEX revealed a relatively narrow "ribbon" of enhanced atomic hydrogen emission from ~200 eV to ~6 keV. The neutrals from both the glow and ribbon are also characterized by non-thermal distribution functions. In addition, INCA on Cassini sees a "belt" of emission in ENAs, broader than the ribbon and tilted significantly away from it, at even higher energies (10s of keV). This evidence supports the idea that the bulk of the energy density in the heliosheath plasma resides in a non

Fatty acid profiles of Garuga floribunda, Ipomoea pes-caprae, Melanolepis multiglandulosa and Premna odorata seed oils

USDA-ARS?s Scientific Manuscript database

The fatty acid profiles of the seed oils of four species from four plant families for which no or only sparse information on the fatty acid profiles is available are reported. The five seed oils are Garuga floribunda of the Burseraceae family, Ipomoea pes-caprae of the Convolvulaceae family, Melanol...

A Two-Years' Survey on the Prevalence of Tuberculosis Caused by Mycobacterium caprae in Red Deer (Cervus elaphus) in the Tyrol, Austria

PubMed Central

Schoepf, Karl; Prodinger, Wolfgang M.; Glawischnig, Walter; Hofer, Erwin; Revilla-Fernandez, Sandra; Hofrichter, Johannes; Fritz, Johannes; Köfer, Josef; Schmoll, Friedrich

2012-01-01

A survey of 143 hunter-harvested red deer for tuberculosis was conducted in an Alpine area in Western Austria over two subsequent years. There, single tuberculosis cases caused by Mycobacterium caprae had been detected in cattle and red deer over the preceding decade. The area under investigation covered approximately 500 km2, divided into five different hunting plots. Lymph nodes of red deer were examined grossly and microscopically for typical tuberculosis-like lesions and additionally by microbiological culturing. Executing a detailed hunting plan, nine M. caprae isolates were obtained. Six out of nine originated from one single hunting plot with the highest estimated prevalence of tuberculosis, that is, 23.1%. All isolates were genotyped by mycobacterial interspersed repetitive unit—variable number of tandem repeat (MIRU-VNTR) typing of 24 standard loci plus VNTR 1982. All nine isolates belonged to a single cluster termed “Lechtal” which had been found in cattle and red deer in the region, demonstrating a remarkable dominance and stability over ten years. This is the first report on a systematic prospective study investigating the prevalence and strain variability of M. caprae infection in red deer in Austria and in the Alpine countries. PMID:23762580

The Cancer of the Prostate Risk Assessment (CAPRA) score predicts biochemical recurrence in intermediate-risk prostate cancer treated with external beam radiotherapy (EBRT) dose escalation or low-dose rate (LDR) brachytherapy.

PubMed

Krishnan, Vimal; Delouya, Guila; Bahary, Jean-Paul; Larrivée, Sandra; Taussky, Daniel

2014-12-01

To study the prognostic value of the University of California, San Francisco Cancer of the Prostate Risk Assessment (CAPRA) score to predict biochemical failure (bF) after various doses of external beam radiotherapy (EBRT) and/or permanent seed low-dose rate (LDR) prostate brachytherapy (PB). We retrospectively analysed 345 patients with intermediate-risk prostate cancer, with PSA levels of 10-20 ng/mL and/or Gleason 7 including 244 EBRT patients (70.2-79.2 Gy) and 101 patients treated with LDR PB. The minimum follow-up was 3 years. No patient received primary androgen-deprivation therapy. bF was defined according to the Phoenix definition. Cox regression analysis was used to estimate the differences between CAPRA groups. The overall bF rate was 13% (45/345). The CAPRA score, as a continuous variable, was statistically significant in multivariate analysis for predicting bF (hazard ratio [HR] 1.37, 95% confidence interval [CI] 1.10-1.72, P = 0.006). There was a trend for a lower bF rate in patients treated with LDR PB when compared with those treated by EBRT ≤ 74 Gy (HR 0.234, 95% CI 0.05-1.03, P = 0.055) in multivariate analysis. In the subgroup of patients with a CAPRA score of 3-5, CAPRA remained predictive of bF as a continuous variable (HR 1.51, 95% CI 1.01-2.27, P = 0.047) in multivariate analysis. The CAPRA score is useful for predicting biochemical recurrence in patients treated for intermediate-risk prostate cancer with EBRT or LDR PB. It could help in treatment decisions. © 2013 The Authors. BJU International © 2013 BJU International.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moebius, E.; Bochsler, P.; Heirtzler, D.

Neutral atom imaging of the interstellar gas flow in the inner heliosphere provides the most detailed information on physical conditions of the surrounding interstellar medium (ISM) and its interaction with the heliosphere. The Interstellar Boundary Explorer (IBEX) measured neutral H, He, O, and Ne for three years. We compare the He and combined O+Ne flow distributions for two interstellar flow passages in 2009 and 2010 with an analytical calculation, which is simplified because the IBEX orientation provides observations at almost exactly the perihelion of the gas trajectories. This method allows separate determination of the key ISM parameters: inflow speed, longitude,more » and latitude, as well as temperature. A combined optimization, as in complementary approaches, is thus not necessary. Based on the observed peak position and width in longitude and latitude, inflow speed, latitude, and temperature are found as a function of inflow longitude. The latter is then constrained by the variation of the observed flow latitude as a function of observer longitude and by the ratio of the widths of the distribution in longitude and latitude. Identical results are found for 2009 and 2010: an He flow vector somewhat outside previous determinations ({lambda}{sub ISM{infinity}} = 79.{sup 0}0+3.{sup 0}0(-3.{sup 0}5), {beta}{sub ISM{infinity}} = -4.{sup 0}9 {+-} 0.{sup 0}2, V{sub ISM{infinity}} 23.5 + 3.0(-2.0) km s{sup -1}, T{sub He} = 5000-8200 K), suggesting a larger inflow longitude and lower speed. The O+Ne temperature range, T{sub O+Ne} = 5300-9000 K, is found to be close to the upper range for He and consistent with an isothermal medium for all species within current uncertainties.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bzowski, M.; Kubiak, M. A.; Sokol, J. M.

Because of its high ionization potential and weak interaction with hydrogen, neutral interstellar helium (NISHe) is almost unaffected at the heliospheric interface with the interstellar medium and freely enters the solar system. This second most abundant species provides some of the best information on the characteristics of the interstellar gas in the local interstellar cloud. The Interstellar Boundary Explorer (IBEX) is the second mission to directly detect NISHe. We present a comparison between recent IBEX NISHe observations and simulations carried out using a well-tested quantitative simulation code. Simulation and observation results compare well for times when measured fluxes are dominatedmore » by NISHe (and contributions from other species are small). Differences between simulations and observations indicate a previously undetected secondary population of neutral helium, likely produced by interaction of interstellar helium with plasma in the outer heliosheath. Interstellar neutral parameters are statistically different from previous in situ results obtained mostly from the GAS/Ulysses experiment, but they do agree with the local interstellar flow vector obtained from studies of interstellar absorption: the newly established flow direction is ecliptic longitude 79.{sup 0}2, latitude -5.{sup 0}1, the velocity is {approx}22.8 km s{sup -1}, and the temperature is 6200 K. These new results imply a markedly lower absolute velocity of the gas and thus significantly lower dynamic pressure on the boundaries of the heliosphere and different orientation of the Hydrogen Deflection Plane compared to prior results from Ulysses. A different orientation of this plane also suggests a new geometry of the interstellar magnetic field, and the lower dynamic pressure calls for a compensation by other components of the pressure balance, most likely a higher density of interstellar plasma and strength of interstellar magnetic field.« less

The Energetic Neutral Atoms of the "Croissant" Heliosphere with Jets

NASA Astrophysics Data System (ADS)

Kornbleuth, M. Z.; Opher, M.; Michael, A.

2017-12-01

Opher et al. (2015) suggests the heliosphere may have two jets in the tail-ward direction driven to the north and south. This new model, the "Croissant Heliosphere", is in contrast to the classically accepted view of a comet-like tail. We investigate the effect of the heliosphere with jets model on energetic neutral atom (ENA) maps. Regardless of the existence of a split tail, other models show heliosheath plasma confined by the toroidal magnetic field in a "slinky" structure, similar to astrophysical jets bent by the interstellar medium. Therefore, the confinement of the plasma should appear in the ENA maps. ENA maps from the Interstellar Boundary Explorer (IBEX) have recently shown two high latitude lobes with excess ENA flux at higher energies in the tail of the heliosphere. These lobes could be a signature of the two jet structure of the heliosphere, while some have argued they are cause by the fast/slow solar wind profile. Here we present the ENA maps of the "Croissant Heliosphere" using initially a uniform solar wind. We incorporate pick-up ions (PUIs) into our model based on the kinetic modeling of Malama et al. (2006). We include the extinction of PUIs in the heliosheath and describe a locally created PUI population resulting from this extinction process. Additionally, we include the angular dependence of the PUIs based on the work of Vasyliunas & Siscoe (1976). With our model, we find that, in the presence of a uniform solar wind, the "heliosphere with jets" model is able to qualitatively reproduce the lobe structure of the tail seen in IBEX measurements. Turbulence also manifests itself within the lobes of the simulated ENA maps on the order of years. Finally we will present ENA maps using a time-dependent model of the heliosphere with the inclusion of solar cycle.

The Downwind Hemisphere of the Heliosphere: Eight Years of IBEX-Lo Observations

NASA Astrophysics Data System (ADS)

Galli, A.; Wurz, P.; Schwadron, N. A.; Kucharek, H.; Möbius, E.; Bzowski, M.; Sokół, J. M.; Kubiak, M. A.; Fuselier, S. A.; Funsten, H. O.; McComas, D. J.

2017-12-01

We present a comprehensive study of energetic neutral atoms (ENAs) of 10 eV to 2.5 keV from the downwind hemisphere of the heliosphere. These ENAs are believed to originate mostly from pickup protons and solar-wind protons in the inner heliosheath. This study includes all low-energy observations made with the Interstellar Boundary Explorer over the first eight years. Because the protons around 0.1 keV dominate the plasma pressure within the inner heliosheath in downwind direction, these ENA observations offer the unique opportunity to constrain the plasma properties and dimensions of the heliosheath where no in situ observations are available. We first derive energy spectra of ENA intensities averaged over time for 49 macropixels covering the entire downwind hemisphere. The results confirm previous studies regarding integral intensities and the roll-over around 0.1 keV energy. With the expanded data set, we now find that ENA intensities at 0.2 and 0.1 keV seem to anti-correlate with solar activity. We then derive the product of total plasma pressure and emission thickness of protons in the heliosheath to estimate lower limits on the thickness of the inner heliosheath. The temporally averaged ENA intensities support a rather spherical shape of the termination shock and a heliosheath thickness between 150 and 210 au for most regions of the downwind hemisphere. Around the nominal downwind direction of 76° ecliptic longitude, the heliosheath is at least 280 au thick. There, the neutral hydrogen density seems to be depleted compared to upwind directions by roughly a factor of 2.

The Downwind Hemisphere of the Heliosphere: Eight Years of IBEX -Lo Observations

DOE PAGES

Galli, A.; Wurz, P.; Schwadron, N. A.; ...

2017-12-05

We present a comprehensive study of energetic neutral atoms (ENAs) of 10 eV to 2.5 keV from the downwind hemisphere of the heliosphere. These ENAs are believed to originate mostly from pickup protons and solar wind protons in the inner heliosheath. This study includes all low-energy observations made with the Interstellar Boundary Explorer over the first 8 years. Since the protons around 0.1 keV dominate the plasma pressure in the inner heliosheath in downwind direction, these ENA observations offer the unique opportunity to constrain the plasma properties and dimensions of the heliosheath where no in-situ observations are available. We firstmore » derive energy spectra of ENA intensities averaged over time for 49 macropixels covering the entire downwind hemisphere. The results confirm previous studies regarding integral intensities and the roll-over around 0.1 keV energy. With the expanded dataset we now find that ENA intensities at 0.2 and 0.1 keV seem to anti-correlate with solar activity. We then derive the product of total plasma pressure and emission thickness of protons in the heliosheath to estimate lower limits on the thickness of the inner heliosheath. The temporally averaged ENA intensities support a rather spherical shape of the termination shock and a heliosheath thickness between 150 and 210 au for most regions of the downwind hemisphere. Around the nominal downwind direction of 76° ecliptic longitude, the heliosheath is at least 280 au thick. There, the neutral hydrogen density seems to be depleted compared to upwind directions by roughly a factor of 2.« less

The Downwind Hemisphere of the Heliosphere: Eight Years of IBEX -Lo Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galli, A.; Wurz, P.; Schwadron, N. A.

We present a comprehensive study of energetic neutral atoms (ENAs) of 10 eV to 2.5 keV from the downwind hemisphere of the heliosphere. These ENAs are believed to originate mostly from pickup protons and solar wind protons in the inner heliosheath. This study includes all low-energy observations made with the Interstellar Boundary Explorer over the first 8 years. Since the protons around 0.1 keV dominate the plasma pressure in the inner heliosheath in downwind direction, these ENA observations offer the unique opportunity to constrain the plasma properties and dimensions of the heliosheath where no in-situ observations are available. We firstmore » derive energy spectra of ENA intensities averaged over time for 49 macropixels covering the entire downwind hemisphere. The results confirm previous studies regarding integral intensities and the roll-over around 0.1 keV energy. With the expanded dataset we now find that ENA intensities at 0.2 and 0.1 keV seem to anti-correlate with solar activity. We then derive the product of total plasma pressure and emission thickness of protons in the heliosheath to estimate lower limits on the thickness of the inner heliosheath. The temporally averaged ENA intensities support a rather spherical shape of the termination shock and a heliosheath thickness between 150 and 210 au for most regions of the downwind hemisphere. Around the nominal downwind direction of 76° ecliptic longitude, the heliosheath is at least 280 au thick. There, the neutral hydrogen density seems to be depleted compared to upwind directions by roughly a factor of 2.« less

Ipomoea pes-caprae (L.) R. Br (Convolvulaceae) relieved nociception and inflammation in mice - A topical herbal medicine against effects due to cnidarian venom-skin contact.

PubMed

da Silva Barth, Cristiane; Tolentino de Souza, Hugo Guilherme; Rocha, Lilian W; da Silva, Gislaine Francieli; Dos Anjos, Mariana Ferreira; Pastor, Veronica D'Avila; Belle Bresolin, Tania Mari; Garcia Couto, Angelica; Roberto Santin, José; Meira Quintão, Nara Lins

2017-03-22

Ipomoea pes-caprae is known as bayhops, beach morning glory or goat's foot, and in Brazil as salsa-de-praia. Its leaves are used in worldwide folk medicine for the relief of jellyfish-stings symptoms. The literature only reports the neutralizing effects of nonpolar plant derived over jellyfish venoms, without validating the popular use or exploring the mechanism of action. This study aimed to evaluate and validate the topical effects of a semisolid containing hydroethanolic extract obtained from the aerial parts of I. pes-caprae using different models of paw- and ear-oedema and spontaneous nociception in mice, attempting to better understand the mechanism involved in its effect. Leaf and stem of I. pes-caprae were extracted by ethanol 50% (v/v) and the soft-extract was incorporated in Hostacerin® cream base at 0.5%, 1.0% and 2% (w/w). The anti-hypersensitivity effects were evaluated by injecting the Physalia physalis venom into the right mice's hindpaw pre-treated either with the semisolid containing the I. pes-caprae extract or with the isolated majority compound 3,5-Di-O-caffeoylquinic acid (ISA). The topical anti-inflammatory activity was investigated using both preclinical models: paw oedema induced by trypsin, bradykinin (BK), histamine and carrageenan, and ear oedema induced by capsaicin. Additionally, the model of spontaneous nociception induced by trypsin and capsaicin were used to verify the topical antinociceptive activity. The animals pre-treated with the semisolid containing I. pes-caprae extract or with the intraplantar injection of the major component (ISA) had the mechanical hypersensitivity induced by P. physalis venom significantly reduced. Significant inhibition was also observed in paw-oedema induced by trypsin, histamine and BK, and in a less extent in carrageenan-induced paw oedema. Similar effect was observed in mice challenged to the capsaicin-induced ear-oedema. Besides the vascular effects, the extract interfered with leukocyte migration

Prognostic factors in Chinese patients with prostate cancer receiving primary androgen deprivation therapy: validation of Japan Cancer of the Prostate Risk Assessment (J-CAPRA) score and impacts of pre-existing obesity and diabetes mellitus.

PubMed

Hu, Meng-Bo; Yang, Tian; Hu, Ji-Meng; Zhu, Wen-Hui; Jiang, Hao-Wen; Ding, Qiang

2018-06-01

Our aim was to determine the prognostic factors in Chinese patients with prostate cancer receiving primary androgen deprivation therapy (PADT), validate the Japan Cancer of the Prostate Risk Assessment (J-CAPRA) score, and investigate the impacts of pre-existing obesity and diabetes mellitus (DM). The study enrolled Chinese patients diagnosed with prostatic adenocarcinoma and treated with bilateral orchiectomy as PADT at Huashan Hospital, Fudan University (Shanghai, China), from January 2003 to December 2015. The overall survival (OS) and prognostic value of J-CAPRA score, pre-existing obesity, DM, and various clinicopathological variables were analyzed. Of the 435 patients enrolled, 174 (40.0%) deaths occurred during follow-up; 3- and 5-year OS were 74.0 and 58.9%, respectively. Multivariate analysis identified that higher Gleason score and metastasis were both correlated with worse OS and that higher J-CAPRA score was correlated with worse OS [hazard ratio (HR) 1.110, 95% confidence interval (CI) 1.035-1.190, P = 0.003). Different risk categories based on J-CAPRA score showed good stratification in OS (log-rank P = 0.015). In subgroup analysis, pre-existing obesity as a protective factor in younger patients (age ≤ 65, HR 0.271, 95% CI 0.075-0.980, P = 0.046) and pre-existing DM as a risk factor in older patients (> 75, HR 1.854, 95% CI 1.026-3.351, P = 0.041) for OS were recognized, and the prediction accuracy of J-CAPRA was elevated after incorporating pre-existing obesity and DM. The J-CAPRA score presented with good OS differentiation among Chinese patients under PADT. Younger patients (age ≤ 65) had better OS with pre-existing obesity, while older patients (age > 75) had worse OS with pre-existing DM.

40Ar/39Ar dates from alkaline intrusions of the northern Crazy Mountains, south-central Montana

NASA Astrophysics Data System (ADS)

Harlan, S. S.

2005-05-01

The Crazy Mountains basin of south-central Montana is a complex foreland basin that formed during the interaction of thin-skinned, decollement-style folds of the Montana thrust belt and the basement-involved folds and thrust faults of the Rocky Mountain foreland province. Near the depositional center of the basin, synorogenic strata of the Paleocene Fort Union Formation have been intruded and locally thermally metamorphosed by strongly alkaline to subalkaline Tertiary intrusive rocks. The subalkaline rocks are found mostly in the southern Crazy Mountains and form stocks (Big Timber stock, Loco Mountain stock), radiating dikes and sills. With the exception of the Ibex Mountain sill (?), the alkaline rocks are restricted to the northern Crazy Mountains. New 40Ar/39Ar dates are reported from the strongly alkaline rocks, including the Comb Creek stock and dike swarm, the Ibex Mountain sill(?), and sills from the Robinson anticline intrusive complex. The alkaline rocks of the Robinson anticline intrusive complex are exposed in the easternmost folds of the Cordilleran fold and thrust belt, but despite their arcuate and apparently folded map geometry they have been shown to post-date folding. Hornblende from a trachyte sill in the Robinson anticline intrusive complex yielded a relatively simple age spectrum with a weighted mean of 50.61 ± 0.14 Ma (2σ), which probably records the age of sill emplacement. Nepheline syenite and mafic nepheline syenites of the Comb Creek stock and a dike from its radial dike swarm, two sills from the Robinson antlicline intrusive complex, and the Ibex Mountains sill(?) gave biotite plateau dates ranging from 50.03 to 50.22 Ma, with 2σ errors of ± 0.11 to 0.19 Ma. Because these dates are from fairly small, hypabyssal intrusions, they must have cooled quickly and thus these dates closely approximate the emplacement age of the intrusions. These data indicate that the strongly alkaline intrusions were emplaced during a fairly restricted

Characterization of Staphylococcus caprae Clinical Isolates Involved in Human Bone and Joint Infections, Compared with Goat Mastitis Isolates.

PubMed

d'Ersu, J; Aubin, G G; Mercier, P; Nicollet, P; Bémer, P; Corvec, S

2016-01-01

Staphylococcus caprae is an emerging microorganism in human bone and joint infections (BJI). The aim of this study is to describe the features of S. caprae isolates involved in BJI (H for human) compared with those of isolates recovered in goat mastitis (A for animal). Fourteen isolates of each origin were included. Identifications were performed using a Vitek 2 GP ID card, tuf gene sequencing, and matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) Vitek MS. Molecular typing was carried out using pulsed-field gel electrophoresis (PFGE) and DiversiLab technology. The crystal violet method was used to determine biofilm-forming ability. Virulence factors were searched by PCR. Vitek MS technology provides an accurate identification for the two types of isolates compared to that of gold-standard sequencing (sensitivity, 96.4%), whereas the Vitek 2 GP ID card was more effective for H isolates. Molecular typing methods revealed two distinct lineages corresponding to the origin despite few overlaps: H and A. In our experimental conditions, no significant difference was observed in biofilm production ability between H and A isolates. Nine isolates (5 H isolates and 4 A isolates) behaved as weak producers while one A isolate was a strong producer. Concerning virulence factors, the autolysin atlC and the serine aspartate adhesin (sdrZ) genes were detected in 24 isolates (86%), whereas the lipase gene was always detected, except in one H isolate (96%). The ica operon was present in 23 isolates (82%). Fibrinogen-binding (fbe) or collagen-binding (cna) genes were not detected by using primers designed for Staphylococcus aureus or Staphylococcus epidermidis, even in low stringency conditions. Although S. caprae probably remains underestimated in human infections, further studies are needed to better understand the evolution and the adaptation of this species to its host. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Comparison of genomes of malignant catarrhal fever-associated herpesviruses by restriction endonuclease analysis.

PubMed

Shih, L M; Zee, Y C; Castro, A E

1989-01-01

The restriction endonuclease DNA cleavage patterns of eight isolates of malignant catarrhal fever-associated herpesviruses were examined using the restriction endonucleases HindIII and EcoRI. The eight viruses could be assigned to two distinct groups. Virus isolates from a blue wildebeest, a sika deer and an ibex had restriction endonuclease DNA cleavage patterns that were in general similar to each other. The restriction pattern of these three viruses was distinct from the other five. Of these five, four were isolated from a greater kudu, a white tailed wildebeest, a white bearded wildebeest, and a cape hartebeest. The fifth isolate C500, was isolated from a domestic cow with malignant catarrhal fever. These five viruses had similar DNA cleavage patterns.

Is stock market volatility asymmetric? A multi-period analysis for five countries

NASA Astrophysics Data System (ADS)

Bentes, Sonia R.

2018-06-01

This study examines the asymmetry in the volatility of the returns of five indices, namely, PSI 20 (Portugal), ISEQ 20 (Ireland), MIB 30 (Italy), ATHEX 30 (Greece) and IBEX 35 (Spain) using daily data from 2004-2016. For this purpose, we estimate the GJR and EGARCH asymmetric models for the whole sample and then split it into three subperiods of approximately four years each to examine how the coefficient on asymmetry behaves over time. Our results for the full sample show that all indices exhibit different levels of asymmetry. When we consider the subsample analysis however results show that while there is mixed evidence from the first to the second subperiods, all returns evidence an increase in asymmetry from the second to the last subperiod.

Atmospheric and Spectroscopic Research in the Far Infrared

NASA Technical Reports Server (NTRS)

Park, Kwangjai

2001-01-01

The University of Oregon (UO) was a participant in a number of far infrared spectroscopic projects over the past three decades. These include Sub-millimeter Infrared Balloon Experiment (SIBEX), the Balloon Intercomparison Campaign (BIC), and the Infrared Balloon Experiment (IBEX). In addition to these field studies, the UO program contained a detector research component and a laboratory spectroscopy element. Through a productive collaboration with Dr. Carli's group in Italy, with Prof. Ade's group in England and with Dr. Chance of Harvard-Smithsonian, we have made substantial contributions to the development of far infrared spectroscopy as a mature measurement technology for the atmospheric science. This report summarizes the activities during the latest grant period, covering the span from February 22, 1998 to February 21, 2002.

SU-F-R-22: Malignancy Classification for Small Pulmonary Nodules with Radiomics and Logistic Regression

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, W; Tu, S

Purpose: We conducted a retrospective study of Radiomics research for classifying malignancy of small pulmonary nodules. A machine learning algorithm of logistic regression and open research platform of Radiomics, IBEX (Imaging Biomarker Explorer), were used to evaluate the classification accuracy. Methods: The training set included 100 CT image series from cancer patients with small pulmonary nodules where the average diameter is 1.10 cm. These patients registered at Chang Gung Memorial Hospital and received a CT-guided operation of lung cancer lobectomy. The specimens were classified by experienced pathologists with a B (benign) or M (malignant). CT images with slice thickness ofmore » 0.625 mm were acquired from a GE BrightSpeed 16 scanner. The study was formally approved by our institutional internal review board. Nodules were delineated and 374 feature parameters were extracted from IBEX. We first used the t-test and p-value criteria to study which feature can differentiate between group B and M. Then we implemented a logistic regression algorithm to perform nodule malignancy classification. 10-fold cross-validation and the receiver operating characteristic curve (ROC) were used to evaluate the classification accuracy. Finally hierarchical clustering analysis, Spearman rank correlation coefficient, and clustering heat map were used to further study correlation characteristics among different features. Results: 238 features were found differentiable between group B and M based on whether their statistical p-values were less than 0.05. A forward search algorithm was used to select an optimal combination of features for the best classification and 9 features were identified. Our study found the best accuracy of classifying malignancy was 0.79±0.01 with the 10-fold cross-validation. The area under the ROC curve was 0.81±0.02. Conclusion: Benign nodules may be treated as a malignant tumor in low-dose CT and patients may undergo unnecessary surgeries or

Performance evaluation of different diamond-like carbon samples as charge state conversion surfaces for neutral atom imaging detectors in space applications

NASA Astrophysics Data System (ADS)

Brigitte Neuland, Maike; Allenbach, Marc; Föhn, Martina; Wurz, Peter

2017-04-01

The detection of energetic neutral atoms is a substantial requirement on every space mission mapping particle populations of a planetary magnetosphere or plasma of the interstellar medium. For imaging neutrals, these first have to be ionised. Regarding the constraints of weight, volume and power consumption, the technique of surface ionisation complies with all specifications of a space mission. Particularly low energy neutral atoms, which cannot be ionised by passing through a foil, are ionised by scattering on a charge state conversion surface [1]. Since more than 30 years intense research work is done to find and optimise suitable materials for use as charge state conversion surfaces for space application. Crucial parameters are the ionisation efficiency of the surface material and the scattering properties. Regarding these parameters, diamond-like carbon was proven advantageously: While efficiently ionising incoming neutral atoms, diamond stands out by its durability and chemical inertness [2]. In the IBEX-Lo sensor, a diamond-like carbon surface is used for ionisation of neutral atoms. Building on the successes of the IBEX mission [3], the follow up mission IMAP (InterstellarMApping Probe) will take up to further explore the boundaries of the heliosphere. The IMAP mission is planned to map neutral atoms in a larger energy range and with a distinct better angular resolution and sensitivity than IBEX [4]. The aspired performance of the IMAP sensors implies also for charge state conversion surfaces with improved characteristics. We investigated samples of diamond-like carbon, manufactured by the chemical vapour deposition (CVD) method, regarding their ionisation efficiency, scattering and reflexion properties. Experiments were carried out at the ILENA facility at the University of Bern [5] with hydrogen and oxygen atoms, which are the species of main interest in magnetospheric research [1]. We compare the results of earlier investigations of a metallised CVD

Immunostimulatory acivity of Calophyllum brasiliense, Ipomoea pes-caprae and Matayba elaeagnoides demonstrated by human peripheral blood mononuclear cells proliferation.

PubMed

Philippi, Marina Elisa; Duarte, Bruna Momm; Da Silva, Carolina Vieira; De Souza, Michel Thomaz; Niero, Rivaldo; Cechinel Filho, Valdir; Bueno, Edneia Casagranda

2010-01-01

This study evaluates the effect of methanol extracts of three Brazilian medicinal plants on in vitro proliferation of human mononuclear cells. Lymphoproliferation assay was carried out by incubating human peripheral blood mononuclear cells from healthy donors (1 x 10(6) cells/mL) with extracts of Calophyllum brasiliense (roots), Ipomoea pes-caprae (whole plant) and Matayba elaeagnoides (bark), both at 10, 50, 100 and 200 microg/mL, alone or with phytohemagglutinin (PHA, 5 microg/mL), in 96-well microplates at 37 degrees C with 5% CO2, for 72 h. The quantification of cell proliferation assay was performed by blue tetrazolium (MTT) reduction with reading at 540 nm. Cells incubated with only the culture medium were used as negative control for cell proliferation, while the positive control consisted of cells and PHA. The results suggest that the extracts of all three studied plants induce T lymphocyte proliferation. I. pes-caprae showed immunostimulatory activity three times higher than the C. brasiliense extract, while that of the M. elaeagnoides extract was 1.5 times higher. The results demonstrate immunostimulatory effects of these three plants, therefore the continuity of these studies is recommended, in order to determine the active principles.

Resin glycosides from Ipomoea pes-caprae.

PubMed

Escobedo-Martínez, Carolina; Pereda-Miranda, Rogelio

2007-06-01

Ipomoea pes-caprae (beach morning-glory; "riñonina" for the herbal drug in Mexico) is prescribed by traditional healers to moderate "heat" in an infected kidney. The hexane-soluble extract from the aerial parts of this medicinal plant, through preparative-scale recycling HPLC, yielded six new lipophilic oligosaccharides of jalapinolic acid: pescaproside B (1) and pescapreins V-IX (2-6). The previously known pescaproside A (7), pescapreins I-IV (8-11), and stoloniferin III (12) were also identified in the analyzed material by means of HPLC comparison with authentic samples. The glycosidic acid structure for all pentasaccharides was confirmed as simonic acid B. Pescaproside B (1), an acylated glycosidic acid methyl ester, is structurally related to pescaprein III (10). Pescapreins V (2) and VI (3) are diasteroisomeric tetraglycosidic lactones of operculinic acid C. Both of these compounds contain (2S)-methylbutyric and n-dodecanoic acids as their esterifying residues. Pescapreins VII (4) and IX (6) are pentasaccharides that contain an n-decanoyl group as their esterifying fatty acid residue instead of the n-dodecanoyl found in pescapreins I (8) and IV (11). Pescaprein VIII (5) represents an isomer of pescaprein II (9) containing an n-dodecanoyl unit as the esterifying residue at position C-4 of the third rhamnose moiety and a 2-methylpropanoyl at C-2 of the second rhamnose. High-field NMR spectroscopy and FAB mass spectrometry were used to characterize all new isolated compounds.

Complete mitochondrial genome of Chuanzhong black goat in southwest of China (Capra hircus).

PubMed

Huang, Yong-Fu; Chen, Li-Peng; Zhao, Yong-Ju; Zhang, Hao; Na, Ri-Su; Zhao, Zhong-Quan; Zhang, Jia-Hua; Jiang, Cao-De; Ma, Yue-Hui; Sun, Ya-Wang; E, Guang-Xin

2016-09-01

The Chuanzhong black goat (Capra hircus) is a breed native to southwest of China. Its complete mitochondrial genome is 16,641 nt in length, consisting of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a non-coding control region. As in other mammals, most mitochondrial genes are encoded on the heavy strand, except for ND6 and eight tRNA genes, which are encoded on the light strand. Its overall base composition is A: 33.5%, T: 27.3%, C: 26.1%, and G: 13.1%. The complete mitogenome of the Chinese indigenous breed of goat could provide a basic data for further phylogenetics analysis.

Characterization of lipophilic pentasaccharides from beach morning glory (Ipomoea pes-caprae).

PubMed

Pereda-Miranda, Rogelio; Escalante-Sánchez, Edgar; Escobedo-Martínez, Carolina

2005-02-01

The hexane-soluble extract from the aerial parts of the herbal drug Ipomoea pes-caprae (beach morning-glory), through preparative-scale recycling HPLC, yielded six lipophilic glycosides, namely, five new pentasaccharides of jalapinolic acid, pescaproside A (1) and pescapreins I-IV (2-5), as well as the known stoloniferin III (6). Saponification of the crude resin glycoside mixture yielded simonic acid B (7) as the glycosidic acid component, whereas the esterifying residues of the natural oligosaccharides comprised five fatty acids: 2-methylpropanoic, (2S)-methylbutyric, n-hexanoic, n-decanoic, and n-dodecanoic acids. Pescaproside A (1), an acylated glycosidic acid methyl ester, is related structurally to the product obtained from the macrolactone hydrolysis of pescapreins I-IV (2-5). All the isolated compounds (1-6), characterized through high-field NMR spectroscopy, were found to be weakly cytotoxic to a small panel of cancer cell lines.

Carnivore fecal chemicals suppress feeding by Alpine goats (Capra hircus).

PubMed

Weldon, P J; Graham, D P; Mears, L P

1993-12-01

The efficacy of carnivore and ungulate fecal chemicals in suppressing the feeding behavior of Alpine goats (Capra hircus) was examined. In the first four experiments, goats were offered food covered with paper strips treated with fecal extracts of the Bengal tiger, Siberian tiger, African lion, and brown bear, respectively; food covered with solvent-treated and untreated (plain) papers served as controls in each experiment. Goats made fewer head entries into, and ate less food from, buckets containing fecal extracts. In the fifth experiment, goats were offered food covered with paper strips treated with fecal extracts of the puma, Dorcas gazelle, white-bearded gnu, and conspecifics; food covered with solvent-treated and plain papers again served as controls. The amounts of food consumed from buckets containing puma, gazelle, gnu, and solvent treatments were statistically indistinguishable, but less food was consumed from them than from buckets containing the goat-scented or plain papers. No significant differences among treatments were detected with respect to head entries. Field experiments are needed on the use of predator-derived chemicals to reduce damage by goats to vegetation.

Evaluation of primary androgen deprivation therapy in prostate cancer patients using the J-CAPRA risk score

PubMed Central

Akaza, Hideyuki; Hinotsu, Shiro; Usami, Michiyuki; Ogawa, Osamu; Kitamura, Tadaichi; Suzuki, Kazuhiro; Tsukamoto, Taiji; Naito, Seiji; Namiki, Mikio; Hirao, Yoshihiko; Murai, Masaru

2013-01-01

Purpose: To determine the influence of maximal androgen blockade (MAB) and non-MAB hormonal therapy with an luteinizing hormone releasing hormone (LHRH) analog on overall survival of prostate cancer patients in the Japan Study Group of Prostate Cancer (J-CaP) registry according to risk, as assessed using the novel J-CAPRA risk instrument. To undertake a multivariate analysis combining J-CAPRA risk score, type of hormonal therapy and comorbidities, in order to assess their impact on overall survival. Methods: The J-CaP database includes men in Japan diagnosed with any stage of prostate cancer between 2001 and 2003 and treated with primary androgen deprivation therapy (PADT), as monotherapy or in combination. A total of 26,272 men were enrolled and of these 19,265 were treated with PADT. This analysis was undertaken using the latest data set (30 April, 2010) including a total of 15,727 patients who received PADT and had follow-up data for periods ranging from 0 to 9.2 years. Results: MAB for prostate cancer patients with intermediate- or high-risk disease has a significant benefit in terms of overall survival compared with LHRH analog monotherapy or surgical castration alone. Better results may be achieved in older (≥75 years) patients. Patient comorbidities are an important factor in determining overall survival, notably in older patients, and should be considered when selecting therapy. Conclusions: Based on large-scale registry data, this report is the first to analyze the outcomes of MAB therapy in patients with prostate cancer at a wide range of disease stages. MAB therapy may provide significant survival benefits in intermediate- and high-risk patients. PMID:24223407

The Structure of the Heliosphere as Seen from In Situ and Remote Observations

NASA Astrophysics Data System (ADS)

Pogorelov, N. V.; Heerikhuisen, J.; Kim, T. K.; Zhang, M.

2017-12-01

analysis is based on the simulations that fit observations of energetic neutral atoms performed by IBEX. In particular, the position of the IBEX ribbon on the celestial sphere is strongly dependent on the choice of the plane that contains the vectors of velocity and magnetic field in the unperturbed LISM.

Near-Local Interstellar Medium (LISM): What we know from the Voyagers and ENA and what an Interstellar Probe (ISP) can do

NASA Astrophysics Data System (ADS)

Krimigis, S. M.

2017-12-01

In situ measurements by the two Voyagers over the past 13 years have revealed the presence of the long-predicted termination shock (TS) and heliopause (HP), albeit not where theory had placed them. Further, the advent of energetic neutral atom (ENA) imaging by Cassini/INCA since 2003 and IBEX since 2009 have provided images of the global heliosphere that have challenged our long-held views of its shape and the processes that are dominant in its formation (Krimigis et al, and McComas et al, 2009; Dialynas et al, 2017). In addition, continuing measurements from Voyager 1 beyond the HP, now at 140 AU (1 AU=1.5x108 km, the Sun-Earth distance), have shown that the influence of the Sun extends well beyond the HP (at 122 AU). This influence is manifested through the occasional appearance of anisotropies in the galactic cosmic rays (GCR) where none were predicted, that last as long as a year and are accompanied by electron plasma oscillations in the vicinity of the spacecraft. Thus, an ISP mission with a fast ( 15 AU per year compared to Voyager's 3.6) trajectory would traverse a dynamic region near and beyond the TS and HP, and enable imaging the shape of the heliosphere from beyond its boundaries through ENA. In situ measurements should include the ISM magnetic field (ISMF), plasma density and distribution function, plasma waves, and neutral atom density and composition, as a minimum. All of these measurements would be new information with modern instrumentation that would place the very limited Voyager measurements into the proper context. References: Krimigis, S. M., D. G. Mitchell, E. C. Roelof, K. C. Hsieh and D. J. McComas, Imaging the Interaction of the Heliosphere with the Interstellar Medium from Saturn with Cassini, Science, 326, 5955, p. 971, doi: 10.1126/science.1181079, 2009 McComas, D. J., et al, Global Observations of the Interstellar Interaction from the Interstellar Boundary Explorer (IBEX), Science, 326, 5955, pp. 959, doi: 10.1126/science.1180906, 2009

THE ROLL-OVER OF HELIOSPHERIC NEUTRAL HYDROGEN BELOW 100 eV: OBSERVATIONS AND IMPLICATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galli, A.; Wurz, P.; Schwadron, N. A.

2016-04-20

We present an improved analysis of the energy spectrum of energetic neutral hydrogen from the heliosheath observed with the IBEX -Lo sensor on the Interstellar Boundary EXplorer from the years 2009 to 2012. This analysis allows us to study the lowest energies between 10 and 100 eV although various background sources are more intense than the targeted signal over broad areas of the sky. The results improve our knowledge of the interaction region between our heliosphere and the interstellar plasma because these neutral atoms are direct messengers from the low-energy plasma in the heliosheath. We find a roll-over of themore » energy spectrum below 100 eV, which has major implications for the pressure balance of the plasma in the inner heliosheath. The results can also be compared directly with in situ observations of the Voyager 1 and 2 spacecraft.« less

Teaching Particle Dynamics by Fulldome Animations

NASA Astrophysics Data System (ADS)

Bartolone, L. M.; Reiff, P.; Sumners, C.

2008-12-01

Plasma particle dynamics can be difficult to understand, even for a professional. Creating animations that can be understood and appreciated by the general public are even more challenging. Missions that have "pretty pictures" are much easier to show to the public, whereas creating animations that show how charged particles behave in certain situations is difficult at best. Intrinsically three-dimensional processes such as particle drifts, rotating tilted dipole magnetic fields, charge exchange, and magnetic reconnection can be put into a domed space to put the viewer "into the scene". This allows the viewer to experience, not just see, the process. Examples of animations from our fulldome planetarium shows "IBEX: Search for the Educage of the Solar System", "Force 5" and "Saturn the Ring World 2" will be shown. If space permits, we will bring a portable dome and show these animations in a fulldome theater format.

Biology and impacts of Pacific island invasive species 9. Capra hircus, the feral goat, (Mammalia: Bovidae)

USGS Publications Warehouse

Chynoweth, Mark W.; Litton, Creighton M.; Lepczyk, Christopher A.; Hess, Steve A.; Cordell, Susan

2013-01-01

Domestic goats, Capra hircus, were intentionally introduced to numerous oceanic islands beginning in the sixteenth century. The remarkable ability of C. hircus to survive in a variety of conditions has enabled this animal to become feral and impact native ecosystems on islands throughout the world. Direct ecological impacts include consumption and trampling of native plants, leading to plant community modification and transformation of ecosystem structure. While the negative impacts of feral goats are well-known and effective management strategies have been developed to control this invasive species, large populations persist on many islands. This review summarizes the impacts of feral goats on Pacific island ecosystems, and the management strategies available to control this invasive species.

History vs. legend: Retracing invasion and spread of Oxalis pes-caprae L. in Europe and the Mediterranean area

PubMed Central

Signorini, Maria Adele; Foggi, Bruno; Della Giovampaola, Enrico; Ongaro, Luca; Vivona, Laura; Santosuosso, Ugo; Tani, Corrado; Bruschi, Piero

2017-01-01

Oxalis pes-caprae L. is a South African geophyte that behaves as an invasive in the eurimediterranean area. According to a long-established hypothesis, O. pes-caprae may have invaded Europe and the Mediterranean area starting from a single plant introduced in the Botanical Garden of Malta at the beginning of the 19th century. The aim of this work was to test this hypothesis, to track the arrival of O. pes-caprae in different countries of the Euro-Mediterranean area and to understand the pathways of spreading and particularly its starting point(s). Historical data attesting the presence of the plant in the whole Euro-Mediterranean region were collected from different sources: herbarium specimens, Floras and other botanical papers, plant lists of gardens, catalogs of plant nurseries and plant dealers. First records of the plant (both cultivated and wild) for each Territorial Unit (3rd level of NUTS) were selected and used to draw up a diachronic map and an animated graphic. Both documents clearly show that oldest records are scattered throughout the whole area, proving that the plant arrived in Europe and in the Mediterranean region more times independently and that its spreading started in different times from several different centers of invasion. Botanical gardens and other public or private gardens, nurseries and plant dealers, and above all seaside towns and harbors seemingly played a strategic role as a source of either intentional and unintentional introduction or spread. A geographic profiling analysis was performed to analyse the data. We used also techniques (Silhouette, Kmeans and Voronoi tessellation) capable of verifying the presence of more than one independent clusters of data on the basis of their geographical distribution. Microsatellites were employed for a preliminary analysis of genetic variation in the Mediterranean. Even if the sampling was insufficient, particularly among the populations of the original area, our data supported three main

Uvs Nuur, Mongolia

NASA Technical Reports Server (NTRS)

2007-01-01

The Uvs Nuur Basin in Mongolia and the Russian Federation is the northernmost of the enclosed basins of Central Asia. It takes its name from Uvs Nuur Lake, a large, shallow and very saline lake, very important for migrating birds. Inscribed as a UNESCO World Heritage Site in 2003, the site is made up of twelve protected areas representing major biomes of eastern Eurasia. The steppe ecosystem supports a rich diversity of birds and the desert is home to a number of rare gerbil, jerboas and the marbled polecat. The mountains are an important refuge for the endangered snow leopard, mountain sheep, and the Asiatic ibex.

The image covers an area of 46 x 47.8 km, was acquired on September 4, 2001, and is located near 50.3 degrees north latitude, 90.7 degrees east longitude.

The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

Uvs Nuur, Mongolia

NASA Image and Video Library

2007-09-14

The Uvs Nuur Basin in Mongolia and the Russian Federation is the northernmost of the enclosed basins of Central Asia. It takes its name from Uvs Nuur Lake, a large, shallow and very saline lake, very important for migrating birds. Inscribed as a UNESCO World Heritage Site in 2003, the site is made up of twelve protected areas representing major biomes of eastern Eurasia. The steppe ecosystem supports a rich diversity of birds and the desert is home to a number of rare gerbil, jerboas and the marbled polecat. The mountains are an important refuge for the endangered snow leopard, mountain sheep, and the Asiatic ibex. The image covers an area of 46 x 47.8 km, was acquired on September 4, 2001, and is located near 50.3 degrees north latitude, 90.7 degrees east longitude. This image is from NASA Terra satellite. http://photojournal.jpl.nasa.gov/catalog/PIA10613

Solar-Heliospheric-Interstellar Cosmic Ray Tour with the NASA Virtual Energetic Particle Observatory and the Space Physics Data Facility

NASA Astrophysics Data System (ADS)

Cooper, John F.; Papitashvili, Natalia E.; Johnson, Rita C.; Lal, Nand; McGuire, Robert E.

2015-04-01

NASA now has a large collection of solar, heliospheric, and local interstellar (Voyager 1) cosmic ray particle data sets that can be accessed through the data system services of the NASA Virtual Energetic Particle Observatory (VEPO) in collaboration with the NASA Space Physics Data Facility SPDF), respectively led by the first and last authors. The VEPO services were developed to enhance the long-existing OMNIWeb solar wind and energetic particle services of SPDF for on-line browse, correlative, and statistical analysis of NASA and ESA mission fields, plasma, and energetic particle data. In this presentation we take of tour through VEPO and SPDF of SEP reservoir events, the outer heliosphere earlier surveyed by the Pioneer, Voyager, and Ulysses spacecraft and now being probed by New Horizons, and the heliosheath-heliopause-interstellar regions now being explored by the Voyagers and IBEX. Implications of the latter measurements are also considered for the flux spectra of low to high energy cosmic rays in interstellar space.

Instabilities and Turbulence Generation by Pick-Up Ion Distributions in the Outer Heliosheath

NASA Astrophysics Data System (ADS)

Weichman, K.; Roytershteyn, V.; Delzanno, G. L.; Pogorelov, N.

2017-12-01

Pick-up ions (PUIs) play a significant role in the dynamics of the heliosphere. One problem that has attracted significant attention is the stability of ring-like distributions of PUIs and the electromagnetic fluctuations that could be generated by PUI distributions. For example, PUI stability is relevant to theories attempting to identify the origins of the IBEX ribbon. PUIs have previously been investigated by linear stability analysis of model (e.g. Gaussian) rings and corresponding computer simulations. The majority of these simulations utilized particle-in-cell methods which suffer from accuracy limitations imposed by the statistical noise associated with representing the plasma by a relatively small number of computational particles. In this work, we utilize highly accurate spectral Vlasov simulations conducted using the fully kinetic implicit code SPS (Spectral Plasma Solver) to investigate the PUI distributions inferred from a global heliospheric model (Heerikhuisen et al., 2016). Results are compared with those obtained by hybrid and fully kinetic particle-in-cell methods.

The Capra Research Program for Modelling Extreme Mass Ratio Inspirals

NASA Astrophysics Data System (ADS)

Thornburg, Jonathan

2011-02-01

Suppose a small compact object (black hole or neutron star) of mass m orbits a large black hole of mass M ≫ m. This system emits gravitational waves (GWs) that have a radiation-reaction effect on the particle's motion. EMRIs (extreme-mass-ratio inspirals) of this type will be important GW sources for LISA. To fully analyze these GWs, and to detect weaker sources also present in the LISA data stream, will require highly accurate EMRI GW templates. In this article I outline the ``Capra'' research program to try to model EMRIs and calculate their GWs ab initio, assuming only that m ≪ M and that the Einstein equations hold. Because m ≪ M the timescale for the particle's orbit to shrink is too long for a practical direct numerical integration of the Einstein equations, and because this orbit may be deep in the large black hole's strong-field region, a post-Newtonian approximation would be inaccurate. Instead, we treat the EMRI spacetime as a perturbation of the large black hole's ``background'' (Schwarzschild or Kerr) spacetime and use the methods of black-hole perturbation theory, expanding in the small parameter m/M. The particle's motion can be described either as the result of a radiation-reaction ``self-force'' acting in the background spacetime or as geodesic motion in a perturbed spacetime. Several different lines of reasoning lead to the (same) basic O(m/M) ``MiSaTaQuWa'' equations of motion for the particle. In particular, the MiSaTaQuWa equations can be derived by modelling the particle as either a point particle or a small Schwarzschild black hole. The latter is conceptually elegant, but the former is technically much simpler and (surprisingly for a nonlinear field theory such as general relativity) still yields correct results. Modelling the small body as a point particle, its own field is singular along the particle worldline, so it's difficult to formulate a meaningful ``perturbation'' theory or equations of motion there. Detweiler and Whiting found

Interstellar Probe: The Next Step To Flight

NASA Astrophysics Data System (ADS)

McNutt, Ralph; Zurbuchen, Thomas H.

2016-07-01

In the years following the discovery of the solar wind, the term "heliosphere" was coined and defined as "the region of interplanetary space where the solar wind is flowing supersonically." In June 1971, with the development of the Pioneer probes to Jupiter and beyond well underway, a session of the American Astronautical Society meeting considered scientific exploration reaching beyond the solar system and into the interstellar medium. Despite many discussions, studies, and meetings since, the most recent held under the auspices of the Keck Institute for Space Studies (8-11 September 2014 and 13-15 January 2015), such missions have been relegated to the '"future" due to the large distances and solar system escape speeds contemplated for their execution. In the meantime, the Voyager Interstellar Mission (VIM), consisting of the twin Voyager spacecraft almost 40 years since their respective launches, are making inroads into this region beyond the termination shock of the solar wind, a new region of the solid bodies of the solar system has been opened by the New Horizons flyby of the Pluto system, and the Cassini Ion and Neutral CAmera (INCA) and Interstellar Boundary Explorer (IBEX) have remotely sensed neutral atoms that have provided significant clues to the global structure of the interaction of the solar wind and interstellar medium. It is now time for a dedicated mission to the regime beyond the solar system to explore our galactic environment. A first, near-term implementation can be carried out with the near-current flight system technology. What is also clear is that the high speeds required will limit the spacecraft to a relatively small mass of no more than ~500 kg, regardless of the propulsion details. The recent success of the New Horizons mission at the Pluto system illustrates that with modern technologies, such spacecraft sizes can still accommodate the means to produce paradigm-shifting science, providing for a compelling scientific mission. The

Performance traits and metabolic responses in goats (Capra hircus) supplemented with inorganic trivalent chromium.

PubMed

Haldar, Sudipto; Mondal, Souvik; Samanta, Saikat; Ghosh, Tapan Kumar

2009-11-01

The effects of supplemental chromium (Cr) as chromic chloride hexahydrate in incremental dose levels (0, 0.5, 1.0, and 1.5 mg/day for 240 days) on metabolism of nutrients and trace elements were determined in dwarf Bengal goats (Capra hircus, castrated males, average age 3 months, n = 24, initial mean body weight 6.4 +/- 0.22 kg). Live weight increased linearly (p < 0.05) with the level of supplemental Cr. Organic matter and crude protein digestibility, intake of total digestible nutrients, and retention of N (g/g N intake) increased (p < 0.05) in a dose-dependent linear manner. Serum cholesterol and tryacylglycerol concentrations changed inversely with the dose of supplemental Cr (p < 0.01). Supplemental Cr positively influenced retention of copper and iron (p < 0.05) causing linear increase (p < 0.01) in their serum concentrations. It was concluded that Cr supplementation may improve utilization of nutrients including the trace elements and may also elicit a hypolidemic effect in goats. However, further study with regards to optimization of dose is warranted.

Variation in Lithic Technological Strategies among the Neanderthals of Gibraltar

PubMed Central

Shipton, Ceri; Clarkson, Christopher; Bernal, Marco Antonio; Boivin, Nicole; Finlayson, Clive; Finlayson, Geraldine; Fa, Darren; Pacheco, Francisco Giles; Petraglia, Michael

2013-01-01

The evidence for Neanderthal lithic technology is reviewed and summarized for four caves on The Rock of Gibraltar: Vanguard, Beefsteak, Ibex and Gorham’s. Some of the observed patterns in technology are statistically tested including raw material selection, platform preparation, and the use of formal and expedient technological schemas. The main parameters of technological variation are examined through detailed analysis of the Gibraltar cores and comparison with samples from the classic Mousterian sites of Le Moustier and Tabun C. The Gibraltar Mousterian, including the youngest assemblage from Layer IV of Gorham’s Cave, spans the typical Middle Palaeolithic range of variation from radial Levallois to unidirectional and multi-platform flaking schemas, with characteristic emphasis on the former. A diachronic pattern of change in the Gorham’s Cave sequence is documented, with the younger assemblages utilising more localized raw material and less formal flaking procedures. We attribute this change to a reduction in residential mobility as the climate deteriorated during Marine Isotope Stage 3 and the Neanderthal population contracted into a refugium. PMID:23762312

New Insights Concerning the Local Interstellar medium

NASA Astrophysics Data System (ADS)

Linsky, Jeffrey L.; Redfield, Seth

2015-08-01

We have been analyzing HST high-resolution ultraviolet spectra of nearby stars to measure the radial velocities, turbulence, temperature, and depletions on warm diffuse interstellar gas within a few parsecs of the Sun. These data reveal a picture of many partially-ionized warm gas clouds, each with their own vector velocity and physical characteristics. This picture has been recently challenged by Gry and Jenkins (2014), who argue for a single nonrigid cloud surrounding the Sun. We present a test of these two very different morphological structure by checking how well each predicts the radial velocities in a new data set (Malamut et al. 2014) that was not available when both models were constructed. We find that the multicloud model (Redfield & Linsky 2008) provides a much better fit to the new data. We compare the new IBEX results for the temperature and velocity of inflowing He gas (McComas et al. 2015) with the properties of the Local Interstellar Cloud and the G cloud. We also show a preliminary three-dimensional model for the local interstellar medium.

Invasion genetics of the Bermuda buttercup (Oxalis pes-caprae): complex intercontinental patterns of genetic diversity, polyploidy and heterostyly characterize both native and introduced populations.

PubMed

Ferrero, Victoria; Barrett, Spencer C H; Castro, Sílvia; Caldeirinha, Patrícia; Navarro, Luis; Loureiro, João; Rodríguez-Echeverría, Susana

2015-05-01

Genetic diversity in populations of invasive species is influenced by a variety of factors including reproductive systems, ploidy level, stochastic forces associated with colonization and multiple introductions followed by admixture. Here, we compare genetic variation in native and introduced populations of the clonal plant Oxalis pes-caprae to investigate the influence of reproductive mode and ploidy on levels of diversity. This species is a tristylous geophyte native to South Africa. Invasive populations throughout much of the introduced range are composed of a sterile clonal pentaploid short-styled form. We examined morph ratios, ploidy level, reproductive mode and genetic diversity at nuclear microsatellite loci in 10 and 12 populations from South Africa and the Western Mediterranean region, respectively. Flow cytometry confirmed earlier reports of diploids and tetraploids in the native range, with a single population containing pentaploid individuals. Introduced populations were composed mainly of pentaploids, but sexual tetraploids were also found. There was clear genetic differentiation between ploidy levels, but sexual populations from both regions were not significantly different in levels of diversity. Invasive populations of the pentaploid exhibited dramatically reduced levels of diversity but were not genetically uniform. The occurrence of mixed ploidy levels and stylar polymorphism in the introduced range is consistent with multiple introductions to the Western Mediterranean. This inference was supported by variation patterns at microsatellite loci. Our study indicates that some invasive populations of Oxalis pes-caprae are not entirely clonal, as often assumed, and multiple introductions and recombination have the potential to increase genetic variation in the introduced range. © 2014 John Wiley & Sons Ltd.

Carcass characteristics and fat depots in Iberian and F Large White × Landrace pigs intensively finished or raised outdoors in oak-tree forests.

PubMed

Bressan, M C; Almeida, J; Santos Silva, J; Bettencourt, C; Francisco, A; Gama, L T

2016-06-01

A factorial experiment was performed with 117 barrows belonging to the Iberian (IB) and crossbred F Large White × Landrace (F) genetic groups, either intensively finished (IN) or finished outdoors on pasture in an oak and cork tree forest (EX). Information was collected on carcass weight, yield, and dimensions; weight of organs, carcass cuts, and abdominal fat depots; backfat depth; measurements of the longissimus thoracis (LT); and yield of different leg tissues. For the 41 slaughter and carcass traits analyzed, the interaction between genetic group and finishing system was significant ( < 0.05) in 18 traits, and overall, there was a more pronounced influence of genetic group than of finishing system. In most variables, particularly those related with fat deposition, the interaction reflected mostly changes in mean differences among genetic groups rather than in their ranking, where IB pigs consistently produced fatter carcasses, regardless of the finishing system. Liver weight in IB-EX pigs was lower by nearly 8% when compared with F-EX or IB-IN pigs, but the opposite pattern was found in F pigs, where liver weight in F-EX pigs was higher by 16% relative to IB-EX pigs or to F-IN pigs. The deposition of adipose tissue was much larger ( < 0.05) in IB pigs compared with F pigs, with means for fat depots in IB pigs that were higher by about 25% in total abdominal fat, 94% in dorsal fat depth, 72% in intermuscular plus subcutaneous fat in the leg, and over 300% in intramuscular fat (IMF). The deposition of lean tissue was much lower in IB pigs ( < 0.05), with means for trimmed loin weight corresponding to about one-half of the means obtained in F pigs, whereas lean percentage in the leg of IB pigs was about two-thirds of the mean in F pigs and the mean area of the LT was nearly one-half of that observed in F pigs in the same finishing system ( < 0.05). A strong correlation was observed between the various fat depots when the full data set was considered (correlations

Analysis of immune-relevant genes expressed in spleen of Capra hircus kids fed with trivalent chromium.

PubMed

Sadeghi, Mostafa; Najafpanah, Mohammad Javad

2013-12-01

Chromium is a biologically important element for humans and laboratory animals. Although the favorable effects of trivalent chromiumon immune responses of studied animals have been well documented, the precise mechanisms by which the chromium acts on immune system is relatively poor studied. In this study, real-time qPCR technique was employed to evaluate the expression profiles of four immune-related genes (B2M, MHCA, MHCB, and Rap2A) in spleens of the domestic goats, Capra hircus, feeding on four different levels of supplemental chromium (0, 0.5, 1, and 1.5 mg/day) as chromium– methionine. The results showed that 1.5 mg/day of supplemental chromium significantly increased the expression of the four studied genes (P <0.01). Since the studied genes play important roles in development, activation, and migration of lymphocytes, their increased expression seems to be an unknown mechanism by which chromium impose reinforcing effects on immune system. Therefore, supplemental chromium can be potentially used to improve immune responses especially in animals experiencing any type of stress such as invasion by a pathogen.

Scanning of selection signature provides a glimpse into important economic traits in goats (Capra hircus).

PubMed

Guan, Dailu; Luo, Nanjian; Tan, Xiaoshan; Zhao, Zhongquan; Huang, Yongfu; Na, Risu; Zhang, Jiahua; Zhao, Yongju

2016-10-31

Goats (Capra hircus) are one of the oldest livestock domesticated species, and have been used for their milk, meat, hair and skins over much of the world. Detection of selection footprints in genomic regions can provide potential insights for understanding the genetic mechanism of specific phenotypic traits and better guide in animal breeding. The study presented here has generated 192.747G raw data and identified more than 5.03 million single-nucleotide polymorphisms (SNPs) and 334,151 Indels (insertions and deletions). In addition, we identified 155 and 294 candidate regions harboring 86 and 97 genes based on allele frequency differences in Dazu black goats (DBG) and Inner Mongolia cashmere goats (IMCG), respectively. Populations differentiation reflected by Fst values detected 368 putative selective sweep regions including 164 genes. The top 1% regions of both low heterozygosity and high genetic differentiation contained 239 (135 genes) and 176 (106 genes) candidate regions in DBG and IMCG, respectively. These genes were related to reproductive and productive traits, such as "neurohypophyseal hormone activity" and "adipocytokine signaling pathway". These findings may be conducive to molecular breeding and the long-term preservation of the valuable genetic resources for this species.

Completing a Ground Truth View of the Global Heliosphere: What Does IMAP Tell Us?

NASA Astrophysics Data System (ADS)

Matthaeus, W. H.

2014-12-01

Recent and planned advances in heliospheric research promise to provide for the first time a fairly complete picture of the processes that shape the Geospace environment and the Heliospheric envelope that defines the magnetic and plasma neighborhood of the Sun. The upcoming Solar Orbiter and Solar probe Plus missions will vastly extend our knowledge of the inner heliospheric drivers that impact the entire system. However to develop understanding of energy and particle transport that controls the Geospace plasma and radiation envirionment, it is necessary to maintain an accurate monitoring of the plasma and electromagnetic properties of the solar wind near 1 AU. To complete understanding of the Heliosphere we must also extend understanding of energy and plasma transport to regions beyond 1 AU and throughout the Heliosphere. This understanding will complete the connection between the the corona, the 1AU environment and the outer boundaries recently explored by the Voyagers and IBEX. This talk will focus on the linkages between inner heliosphere, the Geospace environment and the outer heliosphere, with an emphasis on what an L1 monitor such as IMAP can provde for the next decade of great discoveries in space physics.

The role of wild animals in the ecology of dermatophytes and related fungi.

PubMed

Mantovani, A; Morganti, L; Battelli, G; Mantovani, A; Poglayen, G; Tampieri, M P; Vecchi, G

1982-01-01

The problems associated with infections by dermatophytes and related fungi are discussed. Published and unpublished surveys of 1 481 wild animals of the orders Carnivora, Ungulata, Lagomorpha, Rodentia, Insectivora and Chiroptera and of 29 birds proved to be positive for fungi which were classified as potentially pathogenic zoophilic, potentially pathogenic geophilic and normally non-pathogenic geophilic. Trichophyton mentagrophytes var. mentagrophytes was isolated from 11% of rodents; the fungus was also isolated from Insectivora, the hare and the ibex. T. mentagrophytes var. erinacei was reported in the hedgehog. Microsporum canis was reported in rodents from anthropogenic areas. M. gypseum was reported in Ungulata, Lagomorpha and Rodentia; other geophilic fungi were found in all the orders investigated, with the exception of Chiroptera which proved to be constantly negative. The relationship between the presence of animals and the "animalization" of the environment, and the consequent presence of geophilic fungi is discussed. It is concluded that wild animals may play a role as carriers of dermatophytes and related fungi, may create environmental conditions favourable to their growth and may help to monitor the presence of a fungus in a given area.

Modeling Emission of Heavy Energetic Neutral Atoms from the Heliosphere

NASA Astrophysics Data System (ADS)

Swaczyna, Paweł; Bzowski, Maciej

2017-09-01

Observations of energetic neutral atoms (ENAs) are a fruitful tool for remote diagnosis of the plasma in the heliosphere and its vicinity. So far, instruments detecting ENAs from the heliosphere were configured for observations of hydrogen atoms. Here, we estimate emissions of ENAs of the heavy chemical elements helium, oxygen, nitrogen, and neon. A large portion of the heliospheric ENAs is created in the inner heliosheath from neutralized interstellar pick-up ions (PUIs). We modeled this process and calculated full-sky intensities of ENAs for energies 0.2-130 keV/nuc. We found that the largest fluxes among considered species are expected for helium, smaller for oxygen and nitrogen, and smallest for neon. The obtained intensities are 50-106 times smaller than the hydrogen ENA intensities observed by IBEX. The detection of heavy ENAs will be possible if a future ENA detector is equipped with the capability to measure the masses of observed atoms. Because of different reaction cross-sections among the different species, observations of heavy ENAs can allow for a better understanding of global structure of the heliosphere as well as the transport and energization of PUIs in the heliosphere.

Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages

PubMed Central

Li, Qian; Lin, Sen

2017-01-01

Intramuscular fat (IMF) content and fatty acid composition of longissimus dorsi muscle (LM) change with growth, which partially determines the flavor and nutritional value of goat (Capra hircus) meat. However, unlike cattle, little information is available on the transcriptome-wide changes during different postnatal stages in small ruminants, especially goats. In this study, the sequencing reads of goat LM tissues collected from kid, youth, and adult period were mapped to the goat genome. Results showed that out of total 24 689 Unigenes, 20 435 Unigenes were annotated. Based on expected number of fragments per kilobase of transcript sequence per million base pairs sequenced (FPKM), 111 annotated differentially expressed genes (DEGs) were identified among different postnatal stages, which were subsequently assigned to 16 possible expression patterns by series-cluster analysis. Functional classification by Gene Ontology (GO) analysis was used for selecting the genes showing highest expression related to lipid metabolism. Finally, we identified the node genes for lipid metabolism regulation using co-expression analysis. In conclusion, these data may uncover candidate genes having functional roles in regulation of goat muscle development and lipid metabolism during the various growth stages in goats. PMID:28800357

Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.

PubMed

Lin, Yaqiu; Zhu, Jiangjiang; Wang, Yong; Li, Qian; Lin, Sen

2017-01-01

Intramuscular fat (IMF) content and fatty acid composition of longissimus dorsi muscle (LM) change with growth, which partially determines the flavor and nutritional value of goat (Capra hircus) meat. However, unlike cattle, little information is available on the transcriptome-wide changes during different postnatal stages in small ruminants, especially goats. In this study, the sequencing reads of goat LM tissues collected from kid, youth, and adult period were mapped to the goat genome. Results showed that out of total 24 689 Unigenes, 20 435 Unigenes were annotated. Based on expected number of fragments per kilobase of transcript sequence per million base pairs sequenced (FPKM), 111 annotated differentially expressed genes (DEGs) were identified among different postnatal stages, which were subsequently assigned to 16 possible expression patterns by series-cluster analysis. Functional classification by Gene Ontology (GO) analysis was used for selecting the genes showing highest expression related to lipid metabolism. Finally, we identified the node genes for lipid metabolism regulation using co-expression analysis. In conclusion, these data may uncover candidate genes having functional roles in regulation of goat muscle development and lipid metabolism during the various growth stages in goats.

Characterization of a xylose containing oligosaccharide, an inhibitor of multidrug resistance in Staphylococcus aureus, from Ipomoea pes-caprae.

PubMed

Escobedo-Martínez, Carolina; Cruz-Morales, Sara; Fragoso-Serrano, Mabel; Rahman, M Mukhlesur; Gibbons, Simon; Pereda-Miranda, Rogelio

2010-10-01

Pescaprein XVIII (1), a type of bacterial efflux pump inhibitor, was obtained from the CHCl(3)-soluble resin glycosides of beach morning glory (Ipomoea pes-caprae). The glycosidation sequence for pescaproside C, the glycosidic acid core of the lipophilic macrolactone 1 containing D-xylose and L-rhamnose, was characterized by means of several NMR techniques and FAB mass spectrometry. Recycling HPLC also yielded eight non-cytotoxic bacterial resistance modifiers, the two pescapreins XIX (2) and XX (3) as well as the known murucoidin VI (4), pecapreins II (6) and III (7), and stoloniferins III (5), IX (8) and X (9), all of which contain simonic acid B as their oligosaccharide core. Compounds 1-9 were tested for in vitro antibacterial and resistance-modifying activity against strains of Staphylococcus aureus possessing multidrug resistance efflux mechanisms. All of the pescapreins potentiated the action of norfloxacin against the NorA over-expressing strain by 4-fold (8 microg/mL from 32 microg/mL) at a concentration of 25 microg/mL. Copyright © 2010 Elsevier Ltd. All rights reserved.

The cognitive capabilities of farm animals: categorisation learning in dwarf goats (Capra hircus).

PubMed

Meyer, Susann; Nürnberg, Gerd; Puppe, Birger; Langbein, Jan

2012-07-01

The ability to establish categories enables organisms to classify stimuli, objects and events by assessing perceptual, associative or rational similarities and provides the basis for higher cognitive processing. The cognitive capabilities of farm animals are receiving increasing attention in applied ethology, a development driven primarily by scientifically based efforts to improve animal welfare. The present study investigated the learning of perceptual categories in Nigerian dwarf goats (Capra hircus) by using an automated learning device installed in the animals' pen. Thirteen group-housed goats were trained in a closed-economy approach to discriminate artificial two-dimensional symbols presented in a four-choice design. The symbols belonged to two categories: category I, black symbols with an open centre (rewarded) and category II, the same symbols but filled black (unrewarded). One symbol from category I and three different symbols from category II were used to define a discrimination problem. After the training of eight problems, the animals were presented with a transfer series containing the training problems interspersed with completely new problems made from new symbols belonging to the same categories. The results clearly demonstrate that dwarf goats are able to form categories based on similarities in the visual appearance of artificial symbols and to generalise across new symbols. However, the goats had difficulties in discriminating specific symbols. It is probable that perceptual problems caused these difficulties. Nevertheless, the present study suggests that goats housed under farming conditions have well-developed cognitive abilities, including learning of open-ended categories. This result could prove beneficial by facilitating animals' adaptation to housing environments that favour their cognitive capabilities.

Histomorphometric, fractal and lacunarity comparative analysis of sheep (Ovis aries), goat (Capra hircus) and roe deer (Capreolus capreolus) compact bone samples.

PubMed

Gudea, A I; Stefan, A C

2013-08-01

Quantitative and qualitative studies dealing with histomorphometry of the bone tissue play a new role in modern legal medicine/forensic medicine and archaeozoology nowadays. This study deals with the differences found in case of humerus and metapodial bones of recent sheep (Ovis aries), goat (Capra hircus) and roedeer (Capreolus capreolus) specimens, both from a qualitative point of view, but mainly from a quantitative perspective. A novel perspective given by the fractal analysis performed on the digital histological images is approached. This study shows that the qualitative assessment may not be a reliable one due to the close resemblance of the structures. From the quantitative perspective (several measurements performed on osteonal units and statistical processing of data),some of the elements measured show significant differences among 3 species(the primary osteonal diameter, etc.). The fractal analysis and the lacunarity of the images show a great deal of potential, proving that this type of analysis can be of great help in the separation of the material from this perspective.

Shared Bacterial and Viral Respiratory Agents in Bighorn Sheep (Ovis canadensis), Domestic Sheep (Ovis aries), and Goats (Capra hircus) in Montana

PubMed Central

Miller, David S.; Weiser, Glen C.; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J.; Keating, Kim A.; Chapman, Phillip L.; Kimberling, Cleon; Rhyan, Jack; Clarke, P. Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents. PMID:22195293

Shared Bacterial and Viral Respiratory Agents in Bighorn Sheep (Ovis canadensis), Domestic Sheep (Ovis aries), and Goats (Capra hircus) in Montana.

PubMed

Miller, David S; Weiser, Glen C; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J; Keating, Kim A; Chapman, Phillip L; Kimberling, Cleon; Rhyan, Jack; Clarke, P Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents.

Shared bacterial and viral respiratory agents in bighorn sheep (Ovis canadensis), domestic sheep (Ovis aries), and goats (Capra hircus) in Montana

USGS Publications Warehouse

Miller, David S.; Weiser, Glen C.; Aune, Keith; Roeder, Brent; Atkinson, Mark; Anderson, Neil; Roffe, Thomas J.; Keating, Kim A.; Chapman, Phillip L.; Kimberling, Cleon; Rhyan, Jack C.; Clarke, P. Ryan

2011-01-01

Transmission of infectious agents from livestock reservoirs has been hypothesized to cause respiratory disease outbreaks in bighorn sheep (Ovis canadensis), and land management policies intended to limit this transmission have proven controversial. This cross-sectional study compares the infectious agents present in multiple populations of bighorn sheep near to and distant from their interface with domestic sheep (O. aries) and domestic goat (Capra hircus) and provides critical baseline information needed for interpretations of cross-species transmission risks. Bighorn sheep and livestock shared exposure to Pasteurellaceae, viral, and endoparasite agents. In contrast, although the impact is uncertain, Mycoplasma sp. was isolated from livestock but not bighorn sheep. These results may be the result of historic cross-species transmission of agents that has resulted in a mosaic of endemic and exotic agents. Future work using longitudinal and multiple population comparisons is needed to rigorously establish the risk of outbreaks from cross-species transmission of infectious agents.

Modeling Emission of Heavy Energetic Neutral Atoms from the Heliosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swaczyna, Paweł; Bzowski, Maciej, E-mail: pswaczyna@cbk.waw.pl

2017-09-10

Observations of energetic neutral atoms (ENAs) are a fruitful tool for remote diagnosis of the plasma in the heliosphere and its vicinity. So far, instruments detecting ENAs from the heliosphere were configured for observations of hydrogen atoms. Here, we estimate emissions of ENAs of the heavy chemical elements helium, oxygen, nitrogen, and neon. A large portion of the heliospheric ENAs is created in the inner heliosheath from neutralized interstellar pick-up ions (PUIs). We modeled this process and calculated full-sky intensities of ENAs for energies 0.2–130 keV/nuc. We found that the largest fluxes among considered species are expected for helium, smallermore » for oxygen and nitrogen, and smallest for neon. The obtained intensities are 50–10{sup 6} times smaller than the hydrogen ENA intensities observed by IBEX . The detection of heavy ENAs will be possible if a future ENA detector is equipped with the capability to measure the masses of observed atoms. Because of different reaction cross-sections among the different species, observations of heavy ENAs can allow for a better understanding of global structure of the heliosphere as well as the transport and energization of PUIs in the heliosphere.« less

Burnt bone assemblages from El Esquilleu cave (Cantabria, Northern Spain): deliberate use for fuel or systematic disposal of organic waste?

NASA Astrophysics Data System (ADS)

Yravedra, J.; Uzquiano, P.

2013-05-01

Bones or fossil fuels associated with combustion structures have been widely discussed in several works related to Neanderthal lifestyles and subsistence patterns during the MIS 3. El Esquilleu cave (western Cantabria, Spain) can significantly contribute to this issue, particularly with the taphonomic study of layers 21 and 23, which are characterized by the presence of hearths containing abundant burnt and charred faunal remains of ibex. The fragmentation and burning rates as well as bone presence within hearths may suggest that they were used as a supplementary fuel resource. Following previous research on the suitability of bones as a supplement to firewood in hearth combustions, a series of experiments are here presented using goat bones, in consistency with the faunal record present at El Esquilleu. Our experiments proved that small-sized animal (<100 kg in weight) bones also possess appropriate qualities for their use as fuel, particularly epiphyseal and axial parts. This paper critically evaluates whether bones could have been used as fuel by the Neanderthal groups at El Esquilleu or whether their combustion resulted from other behavioural practises. In this sense, we compare our results with different proxy data from this site as well as with the palaeoenvironmental information available for the MIS 3 chronological period in Western Europe.

On the integration of financial markets: How strong is the evidence from five international stock markets?

NASA Astrophysics Data System (ADS)

Bentes, Sónia R.

2015-07-01

This paper examines the integration of financial markets using data from five international stock markets in the context of globalization. The theoretical basis of this study relies on the price theory and the Law of One Price, which was adjusted to the framework of financial markets. When price levels are nonstationary, cointegration and the error correction model constitute a powerful tool for the empirical examination of market integration. The error correction model provides a fully dynamic framework that allows to separating the long and the short run effects of the integration process. A dataset encompassing the daily stock price series of the PSI 20 (Portugal), IBEX 35 (Spain), FTSE 100 (UK), NIKKEI 225 (Japan) and SP 500 (US) indices from January 4th 1999 to September 19th 2014 is employed. The results highlight that these five stock markets are linked together by just one long-run relationship, although short-run movements are also present, which causes distinct deviations from the long-run equilibrium relationship. Endogeneity prevails in the system as a whole. While market integration in the sense of the Law of One Price holds, pairwise full price transmission has limited evidence. The results therefore show that stock market price movements are highly nonlinear and complex.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Jeewoo; Kucharek, Harald; Möbius, Eberhard

In this study, we investigate the directional distributions of the secondary interstellar neutral (ISN) He and O populations at Earth's orbit. The secondary populations are created by charge exchange between ISN atoms and interstellar ions in the outer heliosheath. Using the IBEX -Lo He and O observations during the winter–spring seasons (early December to early June) in 2009–2011, we produced all-sky maps for He and O atoms with sputtering corrections. These sky maps include the directional distributions of the primary ISN gas and secondary populations. Our investigations reveal that the secondary He and O populations are observed in the eclipticmore » longitude range 160°–210°. The peak longitudes of the secondary He and O appear to be 14°–34° and 38°–43° away from the peak longitude of the primary interstellar gas flow, respectively. These results indicate that the secondary populations have lower bulk speeds relative to the Sun and their flow directions deviate from the primary gas flow. These results may indicate that one side of the outer heliosheath is thicker than the other side relative to the flow direction of the primary interstellar gas flow.« less

Impact of the German Harz Mountain Weichselian ice-shield and valley glacier development onto Palaeolithic and megafauna disappearances

NASA Astrophysics Data System (ADS)

Diedrich, C.

2013-12-01

Three Pleistocene stages are recorded by 3D Google-Earth geomorphology, cave sediments, river terraces, megafauna, archaeological sites of the Harz Mountain Range and its forelands of northern Germany (central Europe, peak 1141 a.s.l.). Late Pleistocene glaciation stages are modeled preliminary in valley elevations between 407 and 760 a.s.l., starting all southeast below the Brocken Ice Field (above 750 a.s.l.). The 14-11 km long Oder and Bode Valley glaciers left typical moraines, kames, or dead ice depressions, such as fluvial cave relic sediments. The Bode River glacier passed during the LGM the Rübeland Caves, where it deposited reworked kames/lateral moraines in the Baumann's Cave, which floods mixed a Neanderthal camp, leopard lair and cave bear den area. 60 km downstream, fluvial to aeolian deposits were trapped in the gypsum karst doline Westeregeln (Neanderthal camp/hyena den). Late Aurignacians replaced in the region Neanderthals, but a gap of Late Palaeolithic (Gravettian-Magdalenian - 26,000-16,000 BP) settlement, and latest starting speleothem genesis (around 24,260 ± 568 BP) correlate to the LGM, when an "arctic reindeer fauna" with alpine elements (ibex, chamois) accumulated in bone assemblages of a wolverine, polar fox, mustelid, such as European eagle owl dens, which allow landscape reconstructions.

Asymmetric conditional volatility in international stock markets

NASA Astrophysics Data System (ADS)

Ferreira, Nuno B.; Menezes, Rui; Mendes, Diana A.

2007-08-01

Recent studies show that a negative shock in stock prices will generate more volatility than a positive shock of similar magnitude. The aim of this paper is to appraise the hypothesis under which the conditional mean and the conditional variance of stock returns are asymmetric functions of past information. We compare the results for the Portuguese Stock Market Index PSI 20 with six other Stock Market Indices, namely the SP 500, FTSE 100, DAX 30, CAC 40, ASE 20, and IBEX 35. In order to assess asymmetric volatility we use autoregressive conditional heteroskedasticity specifications known as TARCH and EGARCH. We also test for asymmetry after controlling for the effect of macroeconomic factors on stock market returns using TAR and M-TAR specifications within a VAR framework. Our results show that the conditional variance is an asymmetric function of past innovations raising proportionately more during market declines, a phenomenon known as the leverage effect. However, when we control for the effect of changes in macroeconomic variables, we find no significant evidence of asymmetric behaviour of the stock market returns. There are some signs that the Portuguese Stock Market tends to show somewhat less market efficiency than other markets since the effect of the shocks appear to take a longer time to dissipate.

Methicillin resistant Staphylococcus aureus (MRSA) carriage in different free-living wild animal species in Spain.

PubMed

Porrero, M Concepción; Mentaberre, Gregorio; Sánchez, Sergio; Fernández-Llario, Pedro; Gómez-Barrero, Susana; Navarro-Gonzalez, Nora; Serrano, Emmanuel; Casas-Díaz, Encarna; Marco, Ignasi; Fernández-Garayzabal, José-Francisco; Mateos, Ana; Vidal, Dolors; Lavín, Santiago; Domínguez, Lucas

2013-10-01

Methicillin-resistant Staphylococcus aureus (MRSA) is a life-threatening pathogen in humans and its presence in animals is a public health concern. The aim of this study was to measure the prevalence of MRSA in free-living wild animals. Samples from red deer (n=273), Iberian ibex (n=212), Eurasian Griffon vulture (n=40) and wild boar (n=817) taken from different areas in Spain between June 2008 and November 2011 were analyzed. Characterization of the isolates was performed by spa typing, multi-locus sequence typing (MLST) and antimicrobial susceptibility testing. A low prevalence of MRSA was found with 13 isolates obtained from 12 animals (0.89%; 95% CI: 0.46-1.56). All MRSA sequence types belonged to ST398 (t011 and t1451) and ST1 (t127). Genotypes and antimicrobial susceptibility patterns (tetracycline resistance in ST398 and clindamycin-erythromycin-tetracycline resistance in ST1) suggest that the MRSA found probably originated in livestock (ST398) or humans (ST1). This is the first report of MRSA carriers in free-living wild animals in Europe. Although our data showed that MRSA prevalence is currently low, free-living wild animals might act as reservoir and represent a potential risk for human health. Copyright © 2013 Elsevier Ltd. All rights reserved.

Density-Dependent Spacing Behaviour and Activity Budget in Pregnant, Domestic Goats (Capra hircus).

PubMed

Vas, Judit; Andersen, Inger Lise

2015-01-01

Very little is known about the spacing behaviour in social groups of domestic goats (Capra hircus) in the farm environment. In this experiment, we studied interindividual distances, movement patterns and activity budgets in pregnant goats housed at three different densities. Norwegian dairy goats were kept in stable social groups of six animals throughout pregnancy at 1, 2 or 3 m2 per individual and their spacing behaviours (i.e., distance travelled, nearest and furthest neighbour distance) and activity budgets (e.g., resting, feeding, social activities) were monitored. Observations were made in the first, second and last thirds of pregnancy in the mornings, at noon and in the afternoons of each of these phases (4.5 hours per observation period). The findings show that goats held at animal densities of 2 and 3 m2 moved longer distances when they had more space per animal and kept larger nearest and furthest neighbour distances when compared to the 1 m2 per animal density. Less feeding activity was observed at the high animal density compared to the medium and low density treatments. The phase of gestation also had an impact on almost all behavioural variables. Closer to parturition, animals moved further distances and the increase in nearest and furthest neighbour distance was more pronounced at the lower animal densities. During the last period of gestation, goats spent less time feeding and more on resting, social behaviours and engaging in other various activities. Our data suggest that more space per goat is needed for goats closer to parturition than in the early gestation phase. We concluded that in goats spacing behaviour is density-dependent and changes with stages of pregnancy and activities. Finally, the lower density allowed animals to express individual preferences regarding spacing behaviour which is important in ensuring good welfare in a farming situation.

Density-Dependent Spacing Behaviour and Activity Budget in Pregnant, Domestic Goats (Capra hircus)

PubMed Central

Vas, Judit; Andersen, Inger Lise

2015-01-01

Very little is known about the spacing behaviour in social groups of domestic goats (Capra hircus) in the farm environment. In this experiment, we studied interindividual distances, movement patterns and activity budgets in pregnant goats housed at three different densities. Norwegian dairy goats were kept in stable social groups of six animals throughout pregnancy at 1, 2 or 3 m2 per individual and their spacing behaviours (i.e. distance travelled, nearest and furthest neighbour distance) and activity budgets (e.g. resting, feeding, social activities) were monitored. Observations were made in the first, second and last thirds of pregnancy in the mornings, at noon and in the afternoons of each of these phases (4.5 hours per observation period). The findings show that goats held at animal densities of 2 and 3 m2 moved longer distances when they had more space per animal and kept larger nearest and furthest neighbour distances when compared to the 1 m2 per animal density. Less feeding activity was observed at the high animal density compared to the medium and low density treatments. The phase of gestation also had an impact on almost all behavioural variables. Closer to parturition, animals moved further distances and the increase in nearest and furthest neighbour distance was more pronounced at the lower animal densities. During the last period of gestation, goats spent less time feeding and more on resting, social behaviours and engaging in other various activities. Our data suggest that more space per goat is needed for goats closer to parturition than in the early gestation phase. We concluded that in goats spacing behaviour is density-dependent and changes with stages of pregnancy and activities. Finally, the lower density allowed animals to express individual preferences regarding spacing behaviour which is important in ensuring good welfare in a farming situation. PMID:26657240

Australian validation of the Cancer of the Prostate Risk Assessment Post-Surgical score to predict biochemical recurrence after radical prostatectomy.

PubMed

Beckmann, Kerri; O'Callaghan, Michael; Vincent, Andrew; Roder, David; Millar, Jeremy; Evans, Sue; McNeil, John; Moretti, Kim

2018-03-01

The Cancer of the Prostate Risk Assessment Post-Surgical (CAPRA-S) score is a simple post-operative risk assessment tool predicting disease recurrence after radical prostatectomy, which is easily calculated using available clinical data. To be widely useful, risk tools require multiple external validations. We aimed to validate the CAPRA-S score in an Australian multi-institutional population, including private and public settings and reflecting community practice. The study population were all men on the South Australian Prostate Cancer Clinical Outcomes Collaborative Database with localized prostate cancer diagnosed during 1998-2013, who underwent radical prostatectomy without adjuvant therapy (n = 1664). Predictive performance was assessed via Kaplan-Meier and Cox proportional regression analyses, Harrell's Concordance index, calibration plots and decision curve analysis. Biochemical recurrence occurred in 342 (21%) cases. Five-year recurrence-free probabilities for CAPRA-S scores indicating low (0-2), intermediate (3-5) and high risk were 95, 79 and 46%, respectively. The hazard ratio for CAPRA-S score increments was 1.56 (95% confidence interval 1.49-1.64). The Concordance index for 5-year recurrence-free survival was 0.77. The calibration plot showed good correlation between predicted and observed recurrence-free survival across scores. Limitations include the retrospective nature and small numbers with higher CAPRA-S scores. The CAPRA-S score is an accurate predictor of recurrence after radical prostatectomy in our cohort, supporting its utility in the Australian setting. This simple tool can assist in post-surgical selection of patients who would benefit from adjuvant therapy while avoiding morbidity among those less likely to benefit. © 2017 Royal Australasian College of Surgeons.

THE INTERSTELLAR MAGNETIC FIELD CLOSE TO THE SUN. II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frisch, P. C.; Andersson, B-G; Berdyugin, A.

2012-12-01

The magnetic field in the local interstellar medium (ISM) provides a key indicator of the galactic environment of the Sun and influences the shape of the heliosphere. We have studied the interstellar magnetic field (ISMF) in the solar vicinity using polarized starlight for stars within 40 pc of the Sun and 90 Degree-Sign of the heliosphere nose. In Frisch et al. (Paper I), we developed a method for determining the local ISMF direction by finding the best match to a group of interstellar polarization position angles obtained toward nearby stars, based on the assumption that the polarization is parallel tomore » the ISMF. In this paper, we extend the analysis by utilizing weighted fits to the position angles and by including new observations acquired for this study. We find that the local ISMF is pointed toward the galactic coordinates l, b =47 Degree-Sign {+-} 20 Degree-Sign , 25 Degree-Sign {+-} 20 Degree-Sign . This direction is close to the direction of the ISMF that shapes the heliosphere, l, b =33 Degree-Sign {+-} 4 Degree-Sign , 55 Degree-Sign {+-} 4 Degree-Sign , as traced by the center of the 'Ribbon' of energetic neutral atoms discovered by the Interstellar Boundary Explorer (IBEX) mission. Both the magnetic field direction and the kinematics of the local ISM are consistent with a scenario where the local ISM is a fragment of the Loop I superbubble. A nearby ordered component of the local ISMF has been identified in the region l Almost-Equal-To 0 Degree-Sign {yields} 80 Degree-Sign and b Almost-Equal-To 0 Degree-Sign {yields} 30 Degree-Sign , where PlanetPol data show a distance-dependent increase of polarization strength. The ordered component extends to within 8 pc of the Sun and implies a weak curvature in the nearby ISMF of {approx}0.{sup 0}25 pc{sup -1}. This conclusion is conditioned on the small sample of stars available for defining this rotation. Variations from the ordered component suggest a turbulent component of {approx}23 Degree-Sign . The

Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis.

PubMed

Riojas, Marco A; McGough, Katya J; Rider-Riojas, Cristin J; Rastogi, Nalin; Hazbón, Manzour Hernando

2018-01-01

The species within the Mycobacterium tuberculosis Complex (MTBC) have undergone numerous taxonomic and nomenclatural changes, leaving the true structure of the MTBC in doubt. We used next-generation sequencing (NGS), digital DNA-DNA hybridization (dDDH), and average nucleotide identity (ANI) to investigate the relationship between these species. The type strains of Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii were sequenced via NGS. Pairwise dDDH and ANI comparisons between these, previously sequenced MTBC type strain genomes (including 'Mycobacterium canettii', 'Mycobacterium mungi' and 'Mycobacterium orygis') and M. tuberculosis H37Rv T were performed. Further, all available genome sequences in GenBank for species in or putatively in the MTBC were compared to H37Rv T . Pairwise results indicated that all of the type strains of the species are extremely closely related to each other (dDDH: 91.2-99.2 %, ANI: 99.21-99.92 %), greatly exceeding the respective species delineation thresholds, thus indicating that they belong to the same species. Results from the GenBank genomes indicate that all the strains examined are within the circumscription of H37Rv T (dDDH: 83.5-100 %). We, therefore, formally propose a union of the species of the MTBC as M. tuberculosis. M. africanum, M. bovis, M. caprae, M. microti and M. pinnipedii are reclassified as later heterotypic synonyms of M. tuberculosis. 'M. canettii', 'M. mungi', and 'M. orygis' are classified as strains of the species M. tuberculosis. We further recommend use of the infrasubspecific term 'variant' ('var.') and infrasubspecific designations that generally retain the historical nomenclature associated with the groups or otherwise convey such characteristics, e.g. M. tuberculosis var. bovis.

Prevalence of severe fever with thrombocytopenia syndrome virus in black goats (Capra hircus coreanae) in the Republic of Korea.

PubMed

Kang, Jun-Gu; Cho, Yoon-Kyoung; Jo, Yong-Sun; Chae, Jeong-Byoung; Oh, Sung-Suck; Kim, Kye-Hyung; Ko, Mee-Kyung; Yi, Jongyoun; Choi, Kyoung-Seong; Yu, Do-Hyeon; Kim, Hyeon-Cheol; Park, Jinho; Park, Bae-Keun; Choi, Chang-Yong; Jung, Young-Hun; Chae, Joon-Seok

2018-04-26

Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging tick-borne pathogen in China, Japan, and the Republic of Korea (ROK). The aim of this study was to investigate the prevalence of SFTSV antigens and anti-SFTSV antibodies in black goats (Capra hircus coreanae) throughout the ROK. Sera were collected from 737 black goats in nine provinces in the ROK. Eighteen of 737 (2.4%) goat sera were positive for SFTSV on one-step reverse transcription nested polymerase chain reaction. The amplified 346-bp S segments of SFTSV sequences were classified into three genotypes (BG1, BG2, and BG3), and were included in the Japanese clade rather than the Chinese clade, based on phylogenetic analysis. Forty-three of 624 (6.9%) serum samples were seropositive for anti-SFTSV antibodies on enzyme-linked immunosorbent assay analysis. This study is the first to examine the molecular prevalence of SFTSV in goats and the first to perform serological detection of anti-SFTSV antibodies in livestock in the ROK. Moreover, the results indicate that SFTSV is widely distributed in goats and that additional monitoring for SFTSV is needed in livestock in the ROK. Copyright © 2018 Elsevier GmbH. All rights reserved.

Distribution of Flower Morphs, Ploidy Level and Sexual Reproduction of the Invasive Weed Oxalis pes-caprae in the Western Area of the Mediterranean Region

PubMed Central

Castro, Sílvia; Loureiro, João; Santos, Conceição; Ater, Mohammed; Ayensa, Garbiñe; Navarro, Luis

2007-01-01

Background and Aims Oxalis pes-caprae is a widespread invasive weed in regions with a Mediterranean climate. In its native habitat (southern Africa) this species has been reported as heterostylous with trimorphic flowers and a self- and morph-incompatible reproductive system. In most of the areas invaded, only a pentaploid short-styled morphotype that reproduces mainly asexually by bulbils is reported, but this has only been confirmed empirically. This study aims to analyse the floral morph proportions in a wide distribution area, test the sexual female success, and explain the causes of low sexual reproduction of this species in the western area of the Mediterranean Basin. Methods Fifty-five populations of O. pes-caprae were sampled in the Iberian Peninsula and Morocco to evaluate the floral morph ratio and individual fruit set. In plants from a dimorphic population, hand-pollination experiments were performed to evaluate the effect of the pollen source on pollen tube growth through the style. The ploidy level and genome size of individuals of each floral morph were analysed using flow cytometry. Key Results From the populations studied 89·1 % were monomorphic, with most of them containing the short-styled (SS) floral morph, and 10·9 % were dimorphic containing long-styled (LS) and SS morphs. In some of these, isoplethy was verified but no fruit production was observed in any population. A sterile form was also recorded in several populations. Hand-pollination experiments revealed that pollen grains germinated over recipient stigmas. In intermorph crossings, pollen tubes were able to develop and fruit initiation was observed in some cases, while in intramorph pollinations, pollen tube development was sporadic and no fruit initiation was observed. All individuals within each floral form presented the same DNA ploidy level: SS plants were pentaploid and LS and the sterile form were tetraploid. Conclusions The low or null sexual reproduction success of this

Proposed stratotype for the base of the highest Cambrian stage at the first appearance datum of Cordylodus andresi, Lawson Cove section, Utah, USA

USGS Publications Warehouse

Miller, J.F.; Ethington, Raymond L.; Evans, K.R.; Holmer, L.E.; Loch, James D.; Popov, L.E.; Repetski, J.E.; Ripperdan, R.L.; Taylor, John F.

2006-01-01

We propose a candidate for the Global Standard Stratotype-section and Point (GSSP) for the base of the highest stage of the Furongian Series of the Cambrian System. The section is at Lawson Cove in the Ibex area of Millard County, Utah, USA. The marker horizon is the first appearance datum (FAD) of the conodont Cordylodus andresi Viira et Sergeyeva in Kaljo et al. [Kaljo, D., Borovko, N., Heinsalu, H., Khazanovich, K., Mens, K., Popov, L., Sergeyeva, S., Sobolevskaya, R., Viira, V., 1986. The Cambrian-Ordovician boundary in the Baltic-Ladoga clint area (North Estonia and Leningrad Region, USSR). Eesti NSV Teaduste Akadeemia Toimetised. Geologia 35, 97-108]. At this section and elsewhere this horizon also is the FAD of the trilobite Eurekia apopsis (Winston et Nicholls, 1967). This conodont characterizes the base of the Cordylodus proavus Zone, which has been recognized in many parts of the world. This trilobite characterizes the base of the Eurekia apopsis Zone, which has been recognized in many parts of North America. The proposed boundary is 46.7 m above the base of the Lava Dam Member of the Notch Peak Formation at the Lawson Cove section. Brachiopods, sequence stratigraphy, and carbon-isotope geochemistry are other tools that characterize this horizon and allow it to be recognized in other areas. ?? 2006 Nanjing Institute of Geology and Palaeontology, CAS.

Heliospheric structure. The bow wave and the hydrogen wall

DOE PAGES

Zank, G. P.; Heerikhuisen, J.; Wood, B. E.; ...

2012-12-28

Some recent IBEX observations indicate that the local interstellar medium (LISM) flow speed is less than previously thought (23.2 km s -1 rather than 26 km s -1). Reasonable LISM plasma parameters indicate that the LISM flow may be either marginally super-fast magnetosonic or sub-fast magnetosonic. This raises two challenging questions: (1) Can a LISM model that is barely super-fast or sub-fast magnetosonic account for Lyα observations that rely critically on the additional absorption provided by the hydrogen wall (H-wall)? and (2) If the LISM flow is weakly super-fast magnetosonic, does the transition assume the form of a traditional shockmore » or does neutral hydrogen (H) mediate shock dissipation and hence structure through charge exchange? Both questions are addressed using three three-dimensional self-consistently coupled magnetohydrodynamic plasma—kinetic H models with different LISM magnetic field strengths (2, 3, and 4 μG) as well as plasma and neutral H number densities. The 2 and 3 μG models are fast magnetosonic far upwind of the heliopause whereas the 4 μG model is fully subsonic. The 2 μG model admits a broad (~50-75 AU) bow-shock-like structure. The 3 μG model has a smooth super-fast-sub-fast magnetosonic transition that resembles a very broad, ~200 AU thick, bow wave. A theoretical analysis shows that the transition from a super-fast to a sub-fast magnetosonic downstream state is due to the charge exchange of fast neutral H and hot neutral H created in the supersonic solar wind and hot inner heliosheath, respectively. For both the 2 μG and the 3 μG models, the super-fast magnetosonic LISM flow passes through a critical point located where the fast magnetosonic Mach number M = 1 and Qe = γ/(γ - 1)UQm , where Qe and Qm are the plasma energy and momentum source terms due to charge exchange, U is the LISM flow speed, and γ is the plasma adiabatic index. Because the Mach number is only barely super-fast magnetosonic in the 3 μG case, the

Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing.

PubMed

Yuan, Chao; Wang, Xiaolong; Geng, Rongqing; He, Xiaolin; Qu, Lei; Chen, Yulin

2013-07-28

MicroRNAs (miRNAs) are a large family of endogenous, non-coding RNAs, about 22 nucleotides long, which regulate gene expression through sequence-specific base pairing with target mRNAs. Extensive studies have shown that miRNA expression in the skin changes remarkably during distinct stages of the hair cycle in humans, mice, goats and sheep. In this study, the skin tissues were harvested from the three stages of hair follicle cycling (anagen, catagen and telogen) in a fibre-producing goat breed. In total, 63,109,004 raw reads were obtained by Solexa sequencing and 61,125,752 clean reads remained for the small RNA digitalisation analysis. This resulted in the identification of 399 conserved miRNAs; among these, 326 miRNAs were expressed in all three follicular cycling stages, whereas 3, 12 and 11 miRNAs were specifically expressed in anagen, catagen, and telogen, respectively. We also identified 172 potential novel miRNAs by Mireap, 36 miRNAs were expressed in all three cycling stages, whereas 23, 29 and 44 miRNAs were specifically expressed in anagen, catagen, and telogen, respectively. The expression level of five arbitrarily selected miRNAs was analyzed by quantitative PCR, and the results indicated that the expression patterns were consistent with the Solexa sequencing results. Gene Ontology and KEGG pathway analyses indicated that five major biological pathways (Metabolic pathways, Pathways in cancer, MAPK signalling pathway, Endocytosis and Focal adhesion) accounted for 23.08% of target genes among 278 biological functions, indicating that these pathways are likely to play significant roles during hair cycling. During all hair cycle stages of cashmere goats, a large number of conserved and novel miRNAs were identified through a high-throughput sequencing approach. This study enriches the Capra hircus miRNA databases and provides a comprehensive miRNA transcriptome profile in the skin of goats during the hair follicle cycle.

Not so deserted…paleoecology and human subsistence in Central Iberia (Guadalajara, Spain) around the Last Glacial Maximum

NASA Astrophysics Data System (ADS)

Yravedra, José; Julien, Marie-Anne; Alcaraz-Castaño, Manuel; Estaca-Gómez, Verónica; Alcolea-González, Javier; de Balbín-Behrmann, Rodrigo; Lécuyer, Christophe; Marcel, Claude Hillaire; Burke, Ariane

2016-05-01

In contrast to the coastal areas of the Iberian Peninsula, the Upper Palaeolithic settlement of central Iberia, dominated by the Spanish plateau, is poorly known. Traditional models assume a total or virtual depopulation of the interior of the Iberian Peninsula during the Last Glacial. In this paper we present a detailed investigation of human-environment interactions through the first zooarchaeological, taphonomic and isotopic study of the key site of Peña Capón, a rock shelter located in the south-eastern foothills of the Central System range that contains a multi-layered deposit dated to marine isotope stage 2 (MIS 2). Analyses of the faunal assemblages of the Proto-Solutrean (3) and Middle Solutrean (2) layers show that human preferentially hunted horse, deer and iberian ibex living in the vicinity of the rock shelter. Isotope geochemistry of the animal remains of Peña Capón provides us with the first detailed intra-tooth multi-proxy analysis for this time period in south-western Europe, providing estimates of climatic conditions, seasonal flucturation of diet, as well as patterns of seasonal mobility. Our results indicate that human presence at Peña Capón was apparently restricted to relatively warm intervals around the LGM or reflects the presence of an ecological refuge, and provide us with evidence of recurrent human presence in the Iberian interior during the Upper Paleolithic prior to the Magdalenian.

Fisk-Gloeckler Suprathermal Proton Spectrum in the Heliosheath and the Local Interstellar Medium

NASA Technical Reports Server (NTRS)

Cooper, John F.; Kasprzak, W. T.; Mahaffy, P. R.; Niemann, H. B.; Hartle, R. E.; Paschalidis, N.; Chornay, D.; Coplan, M.; Johnson, R. E.

2010-01-01

Convergence of suprathermal keV-MeV proton and ion spectra approximately to the Fisk-Gloeckler (F-G) form j(E) = j(sub 0) E(sup -1.5) in Voyager land 2 heliosheath measurements is suggestive of distributed acceleration in Kolmogorov turbulence which may extend well beyond the heliopause into the local interstellar medium (LISM). Turbulence of this type is already indicated by interstellar radio scintillation measurements of electron density power spectra. Previously published extrapolations (Cooper et al., 2003, 2006) of the LISM proton spectrum from eV to GeV energies are highly consistent with the F-G power-law and further indicative of such turbulence and LISM effectiveness of the F-G cascade acceleration process. The LISM pressure computed from this spectrum well exceeds that from current estimates for the LISM magnetic field, so exchange of energy between the protons and the magnetic field would likely have a strong role in evolution of the turbulence as per the F-G theory and as long ago proposed for cosmic ray energies by Parker and others. Pressure-dependent estimates of the LISM field strength should not ignore this potentially strong and even dominant contribution from the plasma. Presence of high-beta suprathermal plasma on LISM field lines could significantly affect interactions with the heliospheric outer boundary region and might potentially account for distributed and more discrete features in ongoing measurements of energetic neutral emission from the Interstellar Boundary Explorer (IBEX) mission.

Learning about the very local interstellar medium from the Voyagers

NASA Astrophysics Data System (ADS)

Florinski, V. A.; Guo, X.; Burlaga, L. F.

2017-12-01

The outer heliosheath is the region in front of the heliopause affected by the interaction between the solar wind and the flow of interstellar gas. Voyager 1 has been exploring this region for over five years uncovering a number of remarkable phenomena not present elsewhere in space directly accessible by spacecraft. The very local interstellar medium (VLISM) is characterized by remarkably low levels of magnetic fluctuation intensities presenting a nearly scatter free environment for energetic particle propagation. The fluctuations have power law spectra and probably belong to the inertial range of a turbulent cascade fed by a variety of sources, including large and kinetic scale instabilities and the inner heliosheath structures transmitted across the heliopause. While the fluxes of galactic cosmic rays are, on average, very steady in the VLISM, in agreement with theoretical expectations, they also show episodic depletions at the 90 degree pitch angle. These anisotropy events may be associated with the passage of weak compressive magnetic structures resembling shock waves, but with ramp widths orders of magnitude broader than the relevant kinetic plasma scales. The key to understanding the VLISM lies in recognizing the interconnections between the magnetic field data, which has a "local" character, the highly mobile cosmic rays that sample vast regions of space along magnetic field lines, and neutral atom populations measured by IBEX that can reveal kinetic scale physics of energetic ions produced in charge exchange events.

Use of a domestic Korean black goat (Capra hircus coreanae) with its chest crayon-harnessed in detecting estrus of Himalayan tahrs (Hemitragus jemlahicus)

PubMed Central

Yong, Hwanyul

2014-01-01

The reliability of a Korean black goat (Capra hircus coreanae) to detect estrus in Himalayan tahrs (Hemitragus jemlahicus) for an artificial breeding program was investigated. Estrus in six female Himalayan tahrs was synchronized using fluorogestone acetate (FGA) sponges. Thirteen days later, 200 IU of PMSG and 100 IU of hCG were injected before removing the sponges and simultaneously injecting 5 mg of PGF2α the next day. Penetration of the cervical canal and the thickness and location of red crayon marks were examined 40~43 h later. Two females treated with sponges containing 60 or 45 mg of FGA had estrogen levels of 8.7 and 11.1 pg/mL, respectively. No red marks were found on the backs of these two tahrs. The remaining females had higher levels of estradiol, and the red crayon marks were clearly shown. The cervical folds of these tahrs were readily penetrated and the insemination gun was smoothly inserted into the uterine body. In conclusion, a Korean domestic goat with its chest crayon-harnessed was successfully used to detect estrus of Himalayan tahrs. This technique might be utilized as a part of breeding programs for wild goats and avoid the need for a vasectomy of conspecific males. PMID:24690603

An initial comparative map of copy number variations in the goat (Capra hircus) genome

PubMed Central

2010-01-01

Background The goat (Capra hircus) represents one of the most important farm animal species. It is reared in all continents with an estimated world population of about 800 million of animals. Despite its importance, studies on the goat genome are still in their infancy compared to those in other farm animal species. Comparative mapping between cattle and goat showed only a few rearrangements in agreement with the similarity of chromosome banding. We carried out a cross species cattle-goat array comparative genome hybridization (aCGH) experiment in order to identify copy number variations (CNVs) in the goat genome analysing animals of different breeds (Saanen, Camosciata delle Alpi, Girgentana, and Murciano-Granadina) using a tiling oligonucleotide array with ~385,000 probes designed on the bovine genome. Results We identified a total of 161 CNVs (an average of 17.9 CNVs per goat), with the largest number in the Saanen breed and the lowest in the Camosciata delle Alpi goat. By aggregating overlapping CNVs identified in different animals we determined CNV regions (CNVRs): on the whole, we identified 127 CNVRs covering about 11.47 Mb of the virtual goat genome referred to the bovine genome (0.435% of the latter genome). These 127 CNVRs included 86 loss and 41 gain and ranged from about 24 kb to about 1.07 Mb with a mean and median equal to 90,292 bp and 49,530 bp, respectively. To evaluate whether the identified goat CNVRs overlap with those reported in the cattle genome, we compared our results with those obtained in four independent cattle experiments. Overlapping between goat and cattle CNVRs was highly significant (P < 0.0001) suggesting that several chromosome regions might contain recurrent interspecies CNVRs. Genes with environmental functions were over-represented in goat CNVRs as reported in other mammals. Conclusions We describe a first map of goat CNVRs. This provides information on a comparative basis with the cattle genome by identifying putative

HELIOSPHERIC STRUCTURE: THE BOW WAVE AND THE HYDROGEN WALL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zank, G. P.; Heerikhuisen, J.; Pogorelov, N. V.

2013-01-20

Recent IBEX observations indicate that the local interstellar medium (LISM) flow speed is less than previously thought (23.2 km s{sup -1} rather than 26 km s{sup -1}). Reasonable LISM plasma parameters indicate that the LISM flow may be either marginally super-fast magnetosonic or sub-fast magnetosonic. This raises two challenging questions: (1) Can a LISM model that is barely super-fast or sub-fast magnetosonic account for Ly{alpha} observations that rely critically on the additional absorption provided by the hydrogen wall (H-wall)? and (2) If the LISM flow is weakly super-fast magnetosonic, does the transition assume the form of a traditional shock ormore » does neutral hydrogen (H) mediate shock dissipation and hence structure through charge exchange? Both questions are addressed using three three-dimensional self-consistently coupled magnetohydrodynamic plasma-kinetic H models with different LISM magnetic field strengths (2, 3, and 4 {mu}G) as well as plasma and neutral H number densities. The 2 and 3 {mu}G models are fast magnetosonic far upwind of the heliopause whereas the 4 {mu}G model is fully subsonic. The 2 {mu}G model admits a broad ({approx}50-75 AU) bow-shock-like structure. The 3 {mu}G model has a smooth super-fast-sub-fast magnetosonic transition that resembles a very broad, {approx}200 AU thick, bow wave. A theoretical analysis shows that the transition from a super-fast to a sub-fast magnetosonic downstream state is due to the charge exchange of fast neutral H and hot neutral H created in the supersonic solar wind and hot inner heliosheath, respectively. For both the 2 {mu}G and the 3 {mu}G models, the super-fast magnetosonic LISM flow passes through a critical point located where the fast magnetosonic Mach number M = 1 and Q{sub e} = {gamma}/({gamma} - 1)UQ{sub m} , where Q{sub e} and Q{sub m} are the plasma energy and momentum source terms due to charge exchange, U is the LISM flow speed, and {gamma} is the plasma adiabatic index. Because the

Strong Artificial Selection in Domestic Mammals Did Not Result in an Increased Recombination Rate

PubMed Central

Muñoz-Fuentes, Violeta; Marcet-Ortega, Marina; Alkorta-Aranburu, Gorka; Linde Forsberg, Catharina; Morrell, Jane M.; Manzano-Piedras, Esperanza; Söderberg, Arne; Daniel, Katrin; Villalba, Adrian; Toth, Attila; Di Rienzo, Anna; Roig, Ignasi; Vilà, Carles

2015-01-01

Recombination rates vary in intensity and location at the species, individual, sex and chromosome levels. Despite the fundamental biological importance of this process, the selective forces that operate to shape recombination rate and patterns are unclear. Domestication offers a unique opportunity to study the interplay between recombination and selection. In domesticates, intense selection for particular traits is imposed on small populations over many generations, resulting in organisms that differ, sometimes dramatically, in morphology and physiology from their wild ancestor. Although earlier studies suggested increased recombination rate in domesticates, a formal comparison of recombination rates between domestic mammals and their wild congeners was missing. In order to determine broad-scale recombination rate, we used immunolabeling detection of MLH1 foci as crossover markers in spermatocytes in three pairs of closely related wild and domestic species (dog and wolf, goat and ibex, and sheep and mouflon). In the three pairs, and contrary to previous suggestions, our data show that contemporary recombination rate is higher in the wild species. Subsequently, we inferred recombination breakpoints in sequence data for 16 genomic regions in dogs and wolves, each containing a locus associated with a dog phenotype potentially under selection during domestication. No difference in the number and distribution of recombination breakpoints was found between dogs and wolves. We conclude that our data indicate that strong directional selection did not result in changes in recombination in domestic mammals, and that both upper and lower bounds for crossover rates may be tightly regulated. PMID:25414125

Detection of antibodies in wild ruminants to evaluate exposure to liver trematodes.

PubMed

Arias, María Sol; Martínez-Carrasco, Carlos; León-Vizcaíno, Luis; Paz-Silva, Adolfo; Díez-Baños, Pablo; Morrondo, Patrocinio; Alonso, Francisco

2012-08-01

Wild ruminants sharing pastures with domestic livestock are at risk of infection by liver trematodes. Detection of antibodies provides a very useful tool to gain more knowledge about the distribution of these parasites. Non-lethal methods are strongly encouraged for the analysis of the risk of infection among wild ruminants. A seroepidemiological survey was conducted to analyze exposure to hepatic trematodes ( Fasciola hepatica and Dicrocoelium dendriticum ) in wild ruminants from southern Spain. Blood samples were collected from 69 bovids (Mouflon + Spanish ibex) and 143 cervids (red deer + fallow deer) from Sierra de Cazorla, Segura and Las Villas Natural Park. The samples were analyzed using the excretory/secretory antigens of each trematode to determine the IgG response. All the animals were examined at necropsy for the presence of flukes, and the species, age, and gender of the animals were recorded. Fasciola hepatica were only observed in cervids (3%; 95% confidence interval [CI]  =  2-8), while D. dendriticum specimens were recorded in 1% (0-8) of bovids and 4% (CI  =  2-9) of the cervids. The IgG-seroprevalence against F. hepatica was significantly higher in the cervids. Statistical differences according to gender were observed. The bovids exhibited the greatest percentages of positive cases to D. dendriticum antigens, and the DdES-seroprevalence was related to age of the animals. When considering all the factors, the FhES-seroprevalence was initially distributed according to the type of ruminant (cervids), gender (male), and age (>2 yr).

The 2009 Space Science Component of UNH Project SMART and High School Students Building a High-Altitude Balloon Payload

NASA Astrophysics Data System (ADS)

Smith, C. W.; Broad, L.; Chen, L.; Farrugia, C. J.; Frederick-Frost, K.; Goelzer, S.; Kucharek, H.; Messeder, R.; Moebius, E.; Puhl-Quinn, P. A.; Torbert, R. B.

2009-12-01

For the past 19 years the University of New Hampshire has offered a unique research and education opportunity to motivated high-school students called Project SMART (Science and Mathematics Achievement through Research Training). The Space Science module is strongly research based. Students work in teams of two on real research projects carved from the research programs of the faculty. The projects are carefully chosen to match the abilities of the students. The students receive classes in basic physics as well as lectures in space science to help them with their work. This year the research included the analysis of magnetic reconnection observations and Crater FTE observation, both by the CLUSTER spacecraft, the building of Faraday cups for thermal ion measurements in our thermal vacuum facility, and analysis of the IBEX star sensor. In addition to this, the students work on one combined project and for the past several years this project has been the building of a payload for a high-altitude balloon. The students learn to integrate telemetry and GPS location hardware while they build several small experiments that they then fly to the upper reaches of the Earth's atmosphere. This year the payload included a small video camera and the payload flew to 96,000 feet, capturing images of weather patterns as well as the curvature of the Earth, thickness of the atmosphere, and black space. In addition to still photos, we will be showing 2- and 7-minute versions of the 90-minute flight video that include footage from peak altitude, the bursting of the balloon, and initial descent.

κ -distributed protons in the solar wind and their charge-exchange coupling to energetic hydrogen

DOE PAGES

Heerikhuisen, J.; Zirnstein, Eric; Pogorelov, Nikolai

2015-03-16

The interaction between the solar wind and the interstellar medium represents a collision between two plasma flows, resulting in a heliosphere with an extended tail. While the solar wind is mostly ionized material from the corona, the interstellar medium is only partially ionized. The ion and neutral populations are coupled through charge-exchange collisions that operate on length scales of tens to hundreds of astronomical units. About half the interstellar hydrogen flows into the heliosphere where it may charge-exchange with solar wind protons. This process gives rise to a nonthermal proton, known as a pickup ion, which joins the plasma. Inmore » this paper we investigate the effects of approximating the total ion distribution of the subsonic solar wind as a generalized Lorentzian, or κ distribution, using an MHD neutral code. We illustrate the effect different values of the κ parameter have on both the structure of the heliosphere and the energetic neutral atom flux at 1 AU. We find that using a κ distribution in our simulations yields levels of energetic neutral atom flux that are within a factor of about 2 or 3 over the IBEX-Hi range of energies from 0.5 to 6 keV. In conclusion, while the presence of a suprathermal tail in the proton distribution leads to the production of high-energy neutrals, the sharp decline in the charge-exchange cross section around 10 keV mitigates the enhanced transfer of energy from the ions to the neutrals that might otherwise be expected.« less

Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia.

PubMed

Shehzad, Wasim; McCarthy, Thomas Michael; Pompanon, Francois; Purevjav, Lkhagvajav; Coissac, Eric; Riaz, Tiayyba; Taberlet, Pierre

2012-01-01

Accurate information about the diet of large carnivores that are elusive and inhabit inaccessible terrain, is required to properly design conservation strategies. Predation on livestock and retaliatory killing of predators have become serious issues throughout the range of the snow leopard. Several feeding ecology studies of snow leopards have been conducted using classical approaches. These techniques have inherent limitations in their ability to properly identify both snow leopard feces and prey taxa. To examine the frequency of livestock prey and nearly-threatened argali in the diet of the snow leopard, we employed the recently developed DNA-based diet approach to study a snow leopard population located in the Tost Mountains, South Gobi, Mongolia. After DNA was extracted from the feces, a region of ∼100 bp long from mitochondrial 12S rRNA gene was amplified, making use of universal primers for vertebrates and a blocking oligonucleotide specific to snow leopard DNA. The amplicons were then sequenced using a next-generation sequencing platform. We observed a total of five different prey items from 81 fecal samples. Siberian ibex predominated the diet (in 70.4% of the feces), followed by domestic goat (17.3%) and argali sheep (8.6%). The major part of the diet was comprised of large ungulates (in 98.8% of the feces) including wild ungulates (79%) and domestic livestock (19.7%). The findings of the present study will help to understand the feeding ecology of the snow leopard, as well as to address the conservation and management issues pertaining to this wild cat.

Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia

PubMed Central

Shehzad, Wasim; McCarthy, Thomas Michael; Pompanon, Francois; Purevjav, Lkhagvajav; Coissac, Eric; Riaz, Tiayyba; Taberlet, Pierre

2012-01-01

Accurate information about the diet of large carnivores that are elusive and inhabit inaccessible terrain, is required to properly design conservation strategies. Predation on livestock and retaliatory killing of predators have become serious issues throughout the range of the snow leopard. Several feeding ecology studies of snow leopards have been conducted using classical approaches. These techniques have inherent limitations in their ability to properly identify both snow leopard feces and prey taxa. To examine the frequency of livestock prey and nearly-threatened argali in the diet of the snow leopard, we employed the recently developed DNA-based diet approach to study a snow leopard population located in the Tost Mountains, South Gobi, Mongolia. After DNA was extracted from the feces, a region of ∼100 bp long from mitochondrial 12S rRNA gene was amplified, making use of universal primers for vertebrates and a blocking oligonucleotide specific to snow leopard DNA. The amplicons were then sequenced using a next-generation sequencing platform. We observed a total of five different prey items from 81 fecal samples. Siberian ibex predominated the diet (in 70.4% of the feces), followed by domestic goat (17.3%) and argali sheep (8.6%). The major part of the diet was comprised of large ungulates (in 98.8% of the feces) including wild ungulates (79%) and domestic livestock (19.7%). The findings of the present study will help to understand the feeding ecology of the snow leopard, as well as to address the conservation and management issues pertaining to this wild cat. PMID:22393381

Toxoplasma gondii in sympatric domestic and wild ungulates in the Mediterranean ecosystem.

PubMed

Almería, S; Cabezón, O; Paniagua, J; Cano-Terriza, D; Jiménez-Ruiz, S; Arenas-Montes, A; Dubey, J P; García-Bocanegra, I

2018-03-01

Toxoplasma gondii is a zoonotic protozoan of worldwide distribution. The present study provides information on risk factors affecting T. gondii infection in domestic and free-ranging wild ungulates sharing habitats in Mediterranean ecosystems in Spain. Serum samples from 482 extensively reared domestic ruminants and 2351 wild ungulates were tested for T. gondii antibodies using the modified agglutination test (MAT, cut-off 1:25). Toxoplasma gondii seroprevalence was 41.2% of 194 sheep, 18.6% of 199 cattle and 5.6% of 89 goats. The main risk factors associated with infection in livestock were the presence of cats, feeding on the ground and at stubble fields. In wild ungulates, T. gondii antibodies were detected in 10.5% of 1063 red deer, 15.6% of 294 fallow deer, 5.6% of 216 European mouflon, 5.6% of 90 Spanish ibex, 13.6% of 22 roe deer and 18.6% of 666 wild boars. The risk factors affecting T. gondii infection in wildlife were species, age and hunting season. Significantly higher seroprevalence was found in domestic ruminants, particularly in sheep, compared to the wild species tested. The present study indicates widespread exposure to T. gondii among domestic and wild ungulates in Southern Spain, with significant differences among species sharing the same ecosystem. The high seroprevalence observed in domestic ruminants, particularly in sheep, reinforces the need for farm management practices to control the risk factors associated with T. gondii infection in extensively reared livestock. Consumption of raw and undercooked food products from domestic and wildlife species may have important implications for public health.

Energetic Neutral Atom Spectra in the 0.2-3.0 keV from a Residual Source Across the Sky Obtained by the Neutral Particle Detector on board Venus Express

NASA Astrophysics Data System (ADS)

Brandt, Pontus; Roelof, Edmond; Wurz, Peter; Decker, Robert; Barabash, Stas; Bazell, David; Sotirelis, Thomas

We have surveyed the sky for residual energetic neutral atom (ENA) signals in the energy range of 0.2-3.0 keV [Brandt et al., AIP Proceedings, 2009]. Approximately three years of data obtained by the Neutral Particle Detector (NPD) on board Venus Express (VEX) from May 2006 through August 2009 have been analyzed. After applying strict viewing criteria to minimize all known signals and subtracting the UV background from the Milky Way, we find a residual energy spectral shape with a ledge/bump at around 0.5 keV and a break in the spectral slope at about 1.0 keV, reiminiscent of the spectral shape obtained in reverse shocks. The ledge/bump at about 0.5 keV appears consistent with twice the plasma flow velocity obtained by the V1 measurements in the inner HS. When the ENA spectrum is divided by the energy dependent charge exchange cross section its slope above 1 keV has a spectral power-law index of 1.5, with some variations across the sky. In order to better understand the spectral shape over an extended energy range we compare the spectra obtained by VEX/NPD with the ones reported by the Interstellar Boundary Explorer (IBEX) [Funsten et al., Science, 2009], by the Ion Neutral Camera (INCA) on board Cassini [Krimigis et al., Science, 2009]and with those measured in-situ in the inner heliosheath (HS) by the Low-Energy Charged Particle (LECP) instrument (>40 keV) on board Voyager-1 (V1).

Wave-Particle Interactions and Particle Acceleration in Turbulent Plasmas: Hybrid Simulations

NASA Astrophysics Data System (ADS)

Kucharek, Harald; Pogorelov, Nikolai; Mueller, Hans; Gamayunov, Konstantin; Farrugia, Charles

2015-04-01

Wave-particle interactions and acceleration processes are present in all key regions inside and outside of the heliosphere. Spacecraft observations measure ion distributions and accelerated ion populations, which are the result of one or several processes. For instance STEREO measures energetic particles associated with interplanetary discontinuities and in the solar wind. Voyager and IBEX provide unique data of energetic particles from the termination shock and the inner and outer heliopause. The range of plasma conditions covered by observations is enormous. However, the physical processes causing particle acceleration and wave-particle interaction and determining the particle distributions are still unknown. Currently two mechanisms, the so-called pumping mechanism (Fisk and Gloeckler, 2010) and merging/contracting island (Fermo, Drake & Swisdak, 2010) are discussed as promising models. In order to determine these individual processes, numerical models or theoretical considerations are needed. Hybrid simulations, which include all kinetic processes self-consistently on the ion level, are a very proven, powerful tool to investigate wave-particle interaction, turbulence, and phase-space evolution of pickup and solar wind ions. In the framework of this study we performed 3D multi-species hybrid simulations for an ion/ion beam instability to study the temporal evolution of ion distributions, their stability, and the influence of self-generated waves. We investigated the energization of ions downstream of interplanetary discontinuities and shocks and downstream of the termination shock, the turbulence, and growth rate of instabilities and compared the results with theoretical predictions. The simulations show that ions can be accelerated downstream of collisionless shocks by trapping of charged particles in coherent wave fronts.

Generalized Jeans' Escape of Pick-Up Ions in Quasi-Linear Relaxation

NASA Technical Reports Server (NTRS)

Moore, T. E.; Khazanov, G. V.

2011-01-01

Jeans escape is a well-validated formulation of upper atmospheric escape that we have generalized to estimate plasma escape from ionospheres. It involves the computation of the parts of particle velocity space that are unbound by the gravitational potential at the exobase, followed by a calculation of the flux carried by such unbound particles as they escape from the potential well. To generalize this approach for ions, we superposed an electrostatic ambipolar potential and a centrifugal potential, for motions across and along a divergent magnetic field. We then considered how the presence of superthermal electrons, produced by precipitating auroral primary electrons, controls the ambipolar potential. We also showed that the centrifugal potential plays a small role in controlling the mass escape flux from the terrestrial ionosphere. We then applied the transverse ion velocity distribution produced when ions, picked up by supersonic (i.e., auroral) ionospheric convection, relax via quasi-linear diffusion, as estimated for cometary comas [1]. The results provide a theoretical basis for observed ion escape response to electromagnetic and kinetic energy sources. They also suggest that super-sonic but sub-Alfvenic flow, with ion pick-up, is a unique and important regime of ion-neutral coupling, in which plasma wave-particle interactions are driven by ion-neutral collisions at densities for which the collision frequency falls near or below the gyro-frequency. As another possible illustration of this process, the heliopause ribbon discovered by the IBEX mission involves interactions between the solar wind ions and the interstellar neutral gas, in a regime that may be analogous [2].

DOE Office of Scientific and Technical Information (OSTI.GOV)

Opher, M.; Drake, J. F.; Zieger, B.

The classic accepted view of the heliosphere is a quiescent, comet-like shape aligned in the direction of the Sun’s travel through the interstellar medium (ISM) extending for thousands of astronomical units (AUs). Here, we show, based on magnetohydrodynamic (MHD) simulations, that the tension (hoop) force of the twisted magnetic field of the Sun confines the solar wind plasma beyond the termination shock and drives jets to the north and south very much like astrophysical jets. These jets are deflected into the tail region by the motion of the Sun through the ISM similar to bent galactic jets moving through themore » intergalactic medium. The interstellar wind blows the two jets into the tail but is not strong enough to force the lobes into a single comet-like tail, as happens to some astrophysical jets. Instead, the interstellar wind flows around the heliosphere and into the equatorial region between the two jets. As in some astrophysical jets that are kink unstable, we show here that the heliospheric jets are turbulent (due to large-scale MHD instabilities and reconnection) and strongly mix the solar wind with the ISM beyond 400 AU. The resulting turbulence has important implications for particle acceleration in the heliosphere. The two-lobe structure is consistent with the energetic neutral atom (ENA) images of the heliotail from IBEX where two lobes are visible in the north and south and the suggestion from the Cassini ENAs that the heliosphere is “tailless.”.« less

Genome-scan analysis for genetic mapping of quantitative trait loci underlying birth weight and onset of puberty in doe kids (Capra hircus).

PubMed

Esmailizadeh, A K

2014-12-01

The objective of this study was to locate quantitative trait loci (QTL) causing variation in birth weight and age of puberty of doe kids in a population of Rayini cashmere goats. Four hundred and thirty kids from five half-sib families were genotyped for 116 microsatellite markers located on the caprine autosomes. The traits recorded were birth weight of the male and female kids, body weight at puberty, average daily gain from birth to age of puberty and age at puberty of the doe kids. QTL analysis was conducted using the least squares interval mapping approach. Linkage analysis indicated significant QTL for birth weight on Capra hircus chromosomes (CHI) 4, 5, 6, 18 and 21. Five QTL located on CHI 5, 14 and 29 were associated with age at puberty. Across-family analysis revealed evidence for overlapping QTL affecting birth weight (78 cM), body weight at puberty (72 cM), average daily gain from birth to age of puberty (72 cM) and age at puberty (76 cM) on CHI 5 and overlapping QTL controlling body weight at puberty and age at puberty on CHI 14 at 18-19 cM. The proportion of the phenotypic variance explained by the detected QTL ranged between 7.9% and 14.4%. Confirming some of the previously reported results for birth weight and growth QTL in goats, this study identified more QTL for these traits and is the first report of QTL for onset of puberty in doe kids. © 2014 Stichting International Foundation for Animal Genetics.

Goats challenged with different members of the Mycobacterium tuberculosis complex display different clinical pictures.

PubMed

Bezos, J; Casal, C; Díez-Delgado, I; Romero, B; Liandris, E; Álvarez, J; Sevilla, I A; Juan, L de; Domínguez, L; Gortázar, C

2015-10-15

Tuberculosis (TB) in goats (Capra hircus) is due to infection with members of the Mycobacterium tuberculosis complex (MTC), mainly Mycobacterium bovis and Mycobacterium caprae. We report a comparative experimental infection of goats with M. bovis, M. caprae and M. tuberculosis strains. We hypothesized that goats experimentally infected with different members of the MTC would display different clinical pictures. Three groups of goats were challenged with either M. bovis SB0134 (group 1, n=5), M. caprae SB0157 (group 2, n=5) and M. tuberculosis SIT58 (group 3, n=4). The highest mean total lesion score was observed in M. bovis challenged goats (mean 15.2, range 9-19), followed by those challenged with M. caprae (10.8, 2-23). The lowest score was recorded in goats challenged with M. tuberculosis (3, 1-6). Culture results coincided with the lesion scores in yielding more positive pools (7/15) in M. bovis challenged goats. By contrast, only three pools were positive from goats challenged M. tuberculosis (3/12) and with M. caprae (3/15), respectively. Differences in the performance of the intradermal and gamma-interferon (IFN-γ) tests depending of the group were observed since all goats from group 1 were diagnosed using intradermal test and these goats reacted earlier to the IFN-γ assay in comparison to the other groups. This study confirmed that goats experimentally infected with different members of the MTC display different clinical pictures and this fact may have implications for MTC maintenance and bacterial shedding. Copyright © 2015 Elsevier B.V. All rights reserved.

Physical Processes in the Heliospheric Interface Region and their Implications for ENA Images

NASA Astrophysics Data System (ADS)

Gruntman, M.; Roelof, E. C.; McComas, D. J.; Funsten, H. O.; Krimigis, S. M.; Mitchell, D. G.

2009-12-01

The recent in situ measurements of particles and fields by Voyager 1 and 2 spacecraft and global heliospheric maps in fluxes of energetic neutral atoms (ENAs) obtained by IBEX and Cassini/INCA have challenged our established concepts of the heliosphere interaction with the surrounding local interstellar medium. We review the physics of the interaction in an attempt to identify most important processes determining the dynamics and properties of the heliospheric sheath region. The non-thermal ion component and interstellar magnetic field clearly play significant roles in the interaction, as well as the flow of the warm interstellar plasma. We stress here that the basic conservation laws for energetic ions and neutrals constrain the processes that must be included in any valid formulation of particle transport. The termination shock can be viewed as a continuous source of energetic ions that are transported throughout the inner heliosheath, through the heliopause, and outward through the outer heliosheath and into the local interstellar medium. ENA images integrate the ENA production by energetic ions along lines of sight (LOS) that extend in principle to infinity, and hence are quite sensitive to the way that energetic ions and ENAs eventually escape this huge (~1000AU) system. Non-thermal ion and ENA space densities can be changed by three mechanisms: spatial transport (which by itself only rearranges the numbers of energetic ions and ENAs), energy gain and loss of ions in electric field, and elastic and inelastic collisions. Thus, only if these mechanisms are properly included in computational models can the salient features observed ENA images be replicated by the model simulations.

African American men with low-grade prostate cancer have increased disease recurrence after prostatectomy compared with Caucasian men.

PubMed

Yamoah, Kosj; Deville, Curtiland; Vapiwala, Neha; Spangler, Elaine; Zeigler-Johnson, Charnita M; Malkowicz, Bruce; Lee, David I; Kattan, Michael; Dicker, Adam P; Rebbeck, Timothy R

2015-02-01

To explore whether disparities in outcomes exist between African American (AA) and Caucasian (CS) men with low-grade prostate cancer and similar cancer of the prostate risk assessment-postsurgery (CAPRA-S) features following prostatectomy (RP). The overall cohort consisted of 1,265 men (234 AA and 1,031 CS) who met the National comprehensive cancer network criteria for low- to intermediate-risk prostate cancer and underwent RP between 1990 and 2012. We first evaluated whether clinical factors were associated with adverse pathologic outcomes and freedom from biochemical failure (FFbF) using the entire cohort. Next, we studied a subset of 705 men (112 AA and 593 CS) who had pathologic Gleason score≤6 (low-grade disease). Using this cohort, we determined whether race affected FFbF in men with RP-proven low-grade disease and similar CAPRA-S scores. With a median follow-up time of 27 months, the overall 7-year FFbF rate was 86% vs. 79% in CS and AA men, respectively (P = 0.035). There was no significant difference in one or more adverse pathologic features between CS vs. AA men (27% vs. 31%; P = 0.35) or CAPRA-S score (P = 0.28). In the subset analysis of patients with low-grade disease, AA race was associated with worse FFbF outcomes (P = 0.002). Furthermore, AA race was a significant predictor of FFbF in men with low-grade disease (hazard ratio = 2.01, 95% CI: 1.08-3.72; P = 0.029). AA race is a predictor of worse FFbF outcomes in men with low-grade disease after RP. These results suggest that a subset of AA men with low-grade disease may benefit from more aggressive treatment. Copyright © 2014 Elsevier Inc. All rights reserved.

Deep Ecology: Educational Possibilities for the Twenty-First Century

ERIC Educational Resources Information Center

Capra, Fritjof

2013-01-01

Fritjof Capra's two-part lecture presents the fundamentals of systems thinking and sustainability along with the power of an ecologically comprehensive theory to shape education to fit the needs of human development in relation to the environment. Dr. Capra aims for the big picture emphasizing that effective learning is a system embedded in the…

Daily variation in melatonin level, antioxidant activity and general immune response of peripheral blood mononuclear cells and lymphoid tissues of Indian goat Capra hircus during summer and winter.

PubMed

Singh, Amaresh Kumar; Ghosh, Somenath; Basu, Priyoneel; Haldar, Chandana

2014-05-01

Daily variation in circulatory melatonin level, during different seasons, has been reported to influence immune system and free-radical scavenging capacity in mammals, including human beings. Similar studies have not been carried out on small ruminant viz. goats that are susceptible to opportunistic infections, increased oxidative load and sickness during free-grazing activity and frequent exposure to agro-chemicals. Therefore, daily variation in immune status, antioxidant enzyme activity and its possible correlation with circulatory melatonin level during two different seasons, summer (long day) and winter (short day) were studied in the Indian goat, Capra hircus. The clinically important immune parameters, such as total leukocyte count, % lymphocyte count and % stimulation ratio of T-lymphocytes presented a day/night rhythm prominently in the winter. The oxidative load in terms of malonedialdehyde was always low during night while antioxidant enzymes superoxide dismutase, catalase and total antioxidant status were high during nighttime (1800 to 0600 hrs). Interestingly, the studied parameters were significantly higher during the winter in both the sexes. Rhythmometric analyses showed prominent rhythmicity in above parameters. The data presented strong positive correlation between high levels of nighttime melatonin levels and immune parameters during winter. It suggests that melatonin possesses immunoenhacing as well as antioxidative property during winter. This might be a necessity for maintenance of physiological harmony in goats to protect them from winter stress.

Nalbuphine and butorphanol reverse opioid-induced respiratory depression but increase arousal in etorphine-immobilized goats (Capra hircus).

PubMed

Haw, Anna J; Meyer, Leith Cr; Fuller, Andrea

2016-09-01

To evaluate and compare the efficacy of two opioid agonist-antagonists, nalbuphine and butorphanol, in reversing etorphine-induced respiratory depression in immobilized goats. Prospective, crossover, experimental trial conducted at 1753 m.a.s.l. Eight adult female Boer goats (Capra hircus). Eight minutes following immobilization with an intramuscular injection of 0.1 mg kg(-1) etorphine, goats were given one of nalbuphine (0.8 mg kg(-1) ), butorphanol (0.1 mg kg(-1) ) or sterile water intravenously, in random order in three trials. Respiratory rate (fR ), ventilation, tidal volume, oxygen consumption (V˙O2 ) and carbon dioxide production (V˙CO2 ) were measured continuously. Arterial blood samples to determine PaO2 and PaCO2 were taken 2 minutes before and at 5 minute intervals after etorphine administration for 25 minutes. Both nalbuphine and butorphanol increased mean PaO2 from 44 mmHg (5.9 kPa) to 63 mmHg (8.4 kPa) after etorphine administration. Butorphanol, but not nalbuphine, also corrected hypopnea and hypoventilation such that fR increased from 13 ± 4 to 21 ± 7 breaths minute(-1) (compared with 16 ± 6 breaths minute(-1) following nalbuphine) and ventilation increased from 4.69 ± 3.04 to 6.91 ± 4.42 L minute(-1) following butorphanol administration. Despite decreases in PaCO2 following nalbuphine and butorphanol, PaCO2 remained elevated compared with pre-immobilization values [nalbuphine: 34 ± 3 mmHg (4.5 ± 0.3 kPa); butorphanol: 34 ± 2 mmHg (4.5 ± 0.3 kPa)] throughout the immobilization. Both agents also decreased the level of immobilization, and increased V˙O2 and V˙CO2 . Nalbuphine and butorphanol significantly improved respiratory function in immobilized goats, with butorphanol eliciting a greater positive response than nalbuphine. However, both opioid agonist-antagonists partly reversed etorphine-induced immobilization. Butorphanol and nalbuphine can be used to improve respiratory parameters in

Analysis of the energetic metabolism in cyclic Bedouin goats (Capra hircus): Nychthemeral and seasonal variations of some haematochemical parameters in relation with body and ambient temperatures.

PubMed

Malek, Mouna; Amirat, Zaina; Khammar, Farida; Khaldoun, Mounira

2016-08-01

Several studies have examined changes in some haematochemical parameters as a function of the different physiological status (cyclic, pregnant and lactating) of goats, but no relevant literature has exhaustively investigated these variations from anestrous to estrous stages in cyclic goats. In this paper, we report nychthemeral and seasonal variations in ambient and body temperatures, and in some haematochemical parameters (glycemia, cholesterolemia, triglyceridemia, creatininemia and uremia) measured during summer, winter and spring, in seven (7) experimental cyclic female Bedouin goats (Capra hircus) living in the Béni-Abbès region (Algerian Sahara desert). Cosinor rhythmometry procedure was used to determine the rhythmic parameters of ambient temperature and haematochemical parameters. To determine the effect of time of day on the rhythmicity of the studied parameters, as well as their seasonality, repeated measure analysis of variance (ANOVA) was applied. The results showed that in spite of the nychthemeral profile presented by the ambient temperature for each season, the body temperature remained in a narrow range, thus indicating a successful thermoregulation. The rhythmometry analysis showed a circadian rhythmicity of ambient temperature and haematochemical parameters with diurnal acrophases. A statistically significant effect of the time of day was shown on all studied haematochemical parameters, except on creatininemia. It was also found that only uremia, cholesterolemia and triglyceridemia followed the seasonal sexual activity of the studied ruminant. This study demonstrated the good physiological adaptation developed by this breed in response to the harsh climatic conditions of its natural environment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Predicting herbivore faecal nitrogen using a multispecies near-infrared reflectance spectroscopy calibration.

PubMed

Villamuelas, Miriam; Serrano, Emmanuel; Espunyes, Johan; Fernández, Néstor; López-Olvera, Jorge R; Garel, Mathieu; Santos, João; Parra-Aguado, María Ángeles; Ramanzin, Maurizio; Fernández-Aguilar, Xavier; Colom-Cadena, Andreu; Marco, Ignasi; Lavín, Santiago; Bartolomé, Jordi; Albanell, Elena

2017-01-01

Optimal management of free-ranging herbivores requires the accurate assessment of an animal's nutritional status. For this purpose 'near-infrared reflectance spectroscopy' (NIRS) is very useful, especially when nutritional assessment is done through faecal indicators such as faecal nitrogen (FN). In order to perform an NIRS calibration, the default protocol recommends starting by generating an initial equation based on at least 50-75 samples from the given species. Although this protocol optimises prediction accuracy, it limits the use of NIRS with rare or endangered species where sample sizes are often small. To overcome this limitation we tested a single NIRS equation (i.e., multispecies calibration) to predict FN in herbivores. Firstly, we used five herbivore species with highly contrasting digestive physiologies to build monospecies and multispecies calibrations, namely horse, sheep, Pyrenean chamois, red deer and European rabbit. Secondly, the equation accuracy was evaluated by two procedures using: (1) an external validation with samples from the same species, which were not used in the calibration process; and (2) samples from different ungulate species, specifically Alpine ibex, domestic goat, European mouflon, roe deer and cattle. The multispecies equation was highly accurate in terms of the coefficient of determination for calibration R2 = 0.98, standard error of validation SECV = 0.10, standard error of external validation SEP = 0.12, ratio of performance to deviation RPD = 5.3, and range error of prediction RER = 28.4. The accuracy of the multispecies equation to predict other herbivore species was also satisfactory (R2 > 0.86, SEP < 0.27, RPD > 2.6, and RER > 8.1). Lastly, the agreement between multi- and monospecies calibrations was also confirmed by the Bland-Altman method. In conclusion, our single multispecies equation can be used as a reliable, cost-effective, easy and powerful analytical method to assess FN in a wide range of herbivore species.

Birds of a Feather: Neanderthal Exploitation of Raptors and Corvids

PubMed Central

Finlayson, Clive; Brown, Kimberly; Blasco, Ruth; Rosell, Jordi; Negro, Juan José; Finlayson, Geraldine; Sánchez Marco, Antonio; Giles Pacheco, Francisco; Rodríguez Vidal, Joaquín; Carrión, José S.; Fa, Darren A.; Rodríguez Llanes, José M.

2012-01-01

The hypothesis that Neanderthals exploited birds for the use of their feathers or claws as personal ornaments in symbolic behaviour is revolutionary as it assigns unprecedented cognitive abilities to these hominins. This inference, however, is based on modest faunal samples and thus may not represent a regular or systematic behaviour. Here we address this issue by looking for evidence of such behaviour across a large temporal and geographical framework. Our analyses try to answer four main questions: 1) does a Neanderthal to raptor-corvid connection exist at a large scale, thus avoiding associations that might be regarded as local in space or time?; 2) did Middle (associated with Neanderthals) and Upper Palaeolithic (associated with modern humans) sites contain a greater range of these species than Late Pleistocene paleontological sites?; 3) is there a taphonomic association between Neanderthals and corvids-raptors at Middle Palaeolithic sites on Gibraltar, specifically Gorham's, Vanguard and Ibex Caves? and; 4) was the extraction of wing feathers a local phenomenon exclusive to the Neanderthals at these sites or was it a geographically wider phenomenon?. We compiled a database of 1699 Pleistocene Palearctic sites based on fossil bird sites. We also compiled a taphonomical database from the Middle Palaeolithic assemblages of Gibraltar. We establish a clear, previously unknown and widespread, association between Neanderthals, raptors and corvids. We show that the association involved the direct intervention of Neanderthals on the bones of these birds, which we interpret as evidence of extraction of large flight feathers. The large number of bones, the variety of species processed and the different temporal periods when the behaviour is observed, indicate that this was a systematic, geographically and temporally broad, activity that the Neanderthals undertook. Our results, providing clear evidence that Neanderthal cognitive capacities were comparable to those of

Birds of a feather: Neanderthal exploitation of raptors and corvids.

PubMed

Finlayson, Clive; Brown, Kimberly; Blasco, Ruth; Rosell, Jordi; Negro, Juan José; Bortolotti, Gary R; Finlayson, Geraldine; Sánchez Marco, Antonio; Giles Pacheco, Francisco; Rodríguez Vidal, Joaquín; Carrión, José S; Fa, Darren A; Rodríguez Llanes, José M

2012-01-01

The hypothesis that Neanderthals exploited birds for the use of their feathers or claws as personal ornaments in symbolic behaviour is revolutionary as it assigns unprecedented cognitive abilities to these hominins. This inference, however, is based on modest faunal samples and thus may not represent a regular or systematic behaviour. Here we address this issue by looking for evidence of such behaviour across a large temporal and geographical framework. Our analyses try to answer four main questions: 1) does a Neanderthal to raptor-corvid connection exist at a large scale, thus avoiding associations that might be regarded as local in space or time?; 2) did Middle (associated with Neanderthals) and Upper Palaeolithic (associated with modern humans) sites contain a greater range of these species than Late Pleistocene paleontological sites?; 3) is there a taphonomic association between Neanderthals and corvids-raptors at Middle Palaeolithic sites on Gibraltar, specifically Gorham's, Vanguard and Ibex Caves? and; 4) was the extraction of wing feathers a local phenomenon exclusive to the Neanderthals at these sites or was it a geographically wider phenomenon?. We compiled a database of 1699 Pleistocene Palearctic sites based on fossil bird sites. We also compiled a taphonomical database from the Middle Palaeolithic assemblages of Gibraltar. We establish a clear, previously unknown and widespread, association between Neanderthals, raptors and corvids. We show that the association involved the direct intervention of Neanderthals on the bones of these birds, which we interpret as evidence of extraction of large flight feathers. The large number of bones, the variety of species processed and the different temporal periods when the behaviour is observed, indicate that this was a systematic, geographically and temporally broad, activity that the Neanderthals undertook. Our results, providing clear evidence that Neanderthal cognitive capacities were comparable to those of

Proposed Auxiliary Boundary Stratigraphic Section and Point (ASSP) for the base of the Ordovician System at Lawson Cove, Utah, USA

USGS Publications Warehouse

Miller, James F.; Evans, Kevin R.; Ethington, Raymond L.; Freeman, Rebecca; Loch, James D.; Repetski, John E.; Ripperdan, Robert; Taylor, John F.

2016-01-01

The Global boundary Stratotype Section and Point (GSSP) for the base of the Ordovician System is at the First Appearance Datum (FAD) of the conodont Iapetognathus fluctivagus at Green Point in Newfoundland, Canada. Strata there are typical graptolitic facies that were deposited near the base of the continental slope.We propose establishing an Auxiliary boundary Stratotype Section and Point (ASSP) at the FAD of I. fluctivagus at the Lawson Cove section in the Ibex area of Millard County, Utah, USA. There, strata consist of typical shelly facies limestones that were deposited on a tropical carbonate platform and contain abundant conodonts, trilobites, brachiopods, and other fossil groups. Cambrian and Ordovician strata in this area are ~5300m thick, with the Lawson Cove section spanning 243m in three overlapping segments. Six other measured and studied sections in the area show stratigraphic relationships similar to those at Lawson Cove. Faunas have been used to divide these strata into 14 conodont and 7 trilobite zonal units. The widespread olenid trilobite Jujuyaspis occurs ~90cm above the proposed boundary at Lawson Cove; this genus is generally regarded as earliest Ordovician. Rhynchonelliform and linguliform brachiopods are common to abundant and are useful for correlation. The FAD of Iapetognathus fluctivagus and occurrences of Jujuyaspis and the Lower Ordovician planktonic graptolite Anisograptus matanensis all occur within a 2.4m interval of strata at a nearby section. Non-biological correlation tools include a detailed sequence stratigraphic classification and a detailed carbon-isotope profile. Especially useful for correlation is a positive 13C excursion peak ~15cm below the proposed boundary horizon. All of these correlation tools form an integrated framework that makes the Lawson Cove section especially useful as an ASSP for global correlation of strata with faunas typical of shallow, warm-water, shelly facies.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Desai, M. I.; Dayeh, M. A.; Allegrini, F.

We investigate the latitude, energy, and temporal variations of the ∼0.5–6 keV energetic neutral atom (ENA) fluxes and spectral indices measured by the Interstellar Boundary Explorer ( IBEX ) outside of the Ribbon from 2009 to 2013. By combining all-sky maps for years 1–3 and years 4–5, we find that the >1.2 keV globally distributed (GD) ENA fluxes at all latitudes decrease by ∼25% from years 1–3 to years 4–5, but there is no change (<5%) in the corresponding spectral indices. We also show that the latitudinal profile and energy-dependence of the ≥1 keV ENA spectral indices outside the Ribbonmore » exhibit no significant time differences between years 1–3 and 4–5, lending strong support for the notion that the highly organized, persistent energy dependence and latitudinal pattern of the ENA spectral indices during 2009–2014 are determined by that of the solar wind (SW) speed observed in the inner heliosphere during the deep solar minimum conditions of 2006–2010. In contrast, the ∼25% decrease in the >1.2 keV ENA fluxes at all latitudes from years 1–3 to years 4–5 occurs because the magnitude of the driving SW parameters (SW density or dynamic pressure) diminished significantly from 2006 to 2010. Based on the reconstructed latitudinal and temporal profiles of SW parameters from 2011 to 2014, i.e., during the rising phase of solar cycle 24, we suggest that the GD ENA fluxes in years 2014–2017, i.e., in maps 6–9, will either stabilize or increase and the latitudinal pattern and energy dependence of the corresponding spectral indices will be disrupted.« less

Magnetic Field Fluctuations Observed in the Heliosheath and Interstellar Magnetic Field by Voyager 1 at 115.7-124.9 AU during 2011-2013

NASA Astrophysics Data System (ADS)

Burlaga, L. F.; Ness, N. F.; Florinski, V.; Heerikhuisen, J.

2014-09-01

We discuss microscale fluctuations of the hour averages of the magnetic field B observed on a scale of one day by Voyager 1 (V1) from 2011.0 to 2012.3143 (when it was within the distant heliosheath, where the average magnetic field strength langBrang = 0.17 nT) and during the interval from 2012.6503 to 2013.5855 (when it was within the interstellar plasma with langBrang = 0.47 nT). In both regions, the fluctuations were primarily compressive fluctuations, varying along the average B (≈T direction in RTN coordinates). In the heliosheath, the average of the daily standard deviations (SDs) of the compressive and transverse components of B were langSDcrang = 0.010 nT and langSDtrang <= 0.005 nT (which is the limit of the measurement). In the distant heliosheath langSDcrang/langBrang = 0.06, and the distributions of SD were skewed and highly kurtotic. The interstellar magnetic field (ISMF) strength was B = 0.48 nT, but the fluctuations were below the limit of measurement: langSDcrang = 0.004 nT and langabs(SDt)rang = 0.004 nT. The distributions of these interstellar SDs have skewness and kurtosis consistent with a Gaussian noise distribution. We also discuss the fluctuations of 48 s averages of B on a scale of 1 day during a 30 day interval when V1 was observing the ISMF. For the fluctuations in all three components of B, SD = 0.010 nT, which gives an upper limit on the fluctuations of the ISMF on the scales observed by V1. This SD rules out the possibility that there is significant power in electromagnetic fluctuations generated by pickup ion ring instabilities at these scales, which strongly constrains models of the IBEX ribbon.

Potential Role of the Mirror and Ion Bernstein Instabilities on the Pickup Ion Dynamics in the Outer Heliosheath: Linear Theory and Hybrid Simulations

NASA Astrophysics Data System (ADS)

Min, K.; Liu, K.; Gary, S. P.

2017-12-01

The main challenge of the secondary ENA mechanism, a theory put forth to explain the IBEX ENA ribbon, is maintaining the stability of the pickup ion velocity distribution before the pickup ions in the outer heliosheath go through two consecutive charge exchanges. The Alfvén/ion-cyclotron instability, which has its maximum growth at propagation parallel to Bo, the background magnetic field, is believed to be the main agent leading to rapid isotropization of the pickup ions. However, recent studies found that this instability can be suppressed when parallel temperatures of the background plasma and the pickup ion ring distribution are comparable, allowing the pickup ion distribution to remain stable for a long period. This paper demonstrates that a pickup ion ring distribution can also drive the mirror and ion Bernstein instabilities which lead to growing modes at propagation oblique to Bo. For idealized proton-electron plasmas where relatively cool background electron and proton populations are represented by isotropic Maxwellian distributions and tenuous (1%) pickup protons are represented by a Maxwellian-ring distribution (assuming a 90˚ pickup angle), linear Vlasov theory predicts unstable mirror and ion Bernstein modes with growth rates comparable to or exceeding that of the Alfvén-cyclotron instability. According to quasilinear theory, interactions with these obliquely-propagating modes can lead to substantial pitch angle scattering of the ring protons. Two-dimensional hybrid (kinetic ions and massless fluid electrons) simulations are carried out to examine the nonlinear consequences of the mirror and Bernstein instabilities. The preliminary simulation results are presented. The study suggests a scenario that the oblique mirror and ion Bernstein modes can be an active agent of the pickup ion isotropization when the condition is such that the Alfvén-cyclotron instability is suppressed.

Science Enabling ASICs and FEEs for the JUICE and JEO Missions

NASA Technical Reports Server (NTRS)

Paschalidis, Nicholas; Sittler, Ed; Cooper, John; Christian, Eric; Moore, Tom

2011-01-01

A family of science enabling radiation hard Application Specific Integrated Circuits (ASICs), Front End Electronics (FEEs) and Event Processing Systems, with flight heritage on many NASA missions, is presented. These technologies play an important role in the miniaturization of instruments -and spacecraft systems- at the same time increasing performance and reducing power. The technologies target time of flight, position sensing, and energy measurements as well as standard housekeeping and telemetry functions for particle and fields instruments, but find applications in other instrument categories too. More specifically the technologies include: the TOF chip, 1D and 2D Delay Lines with MCP detectors, for high precision fast and low power time of flight and position sensing; the Energy chip for multichannel SSD readout with time over threshold and standard voltage read out for TDC and ADC digitization; Fast multi channel read out chip with commandable thresholds; the TRIO chip for multiplexed ADC and housekeeping etc. It should be mentioned that the ASICs include basic trigger capabilities to enable random event processing in a heavy background of penetrators and UV foreground. Typical instruments include time of flight versus energy and look angle particle analyzers such as: plasma composition, energetic particle, neutral atom imaging as well as fast plasma and deltaE/E ion/electron telescopes. Flight missions include: Cassini/LEMMS, IMAGE/HENA, MESSENGER/EPPS/MLA/X-ray/MLA, STEREO, PLUTO-NH/PEPSSI/LORI, IBEX-Lo, JUNO/JEDI, RBSP/RBSPICE, MMS/HPCA/EPD, SO/SIS. Given the proven capability on heavy radiation missions such as JUNO, MMS and RBSB, as well diverse long duration missions such as MESSENGER, PLUTO and Cassini, it is expected that these technologies will play an important role in the particle and fields (at least) instruments on the upcoming JUICE and JEO missions.

Investigating Systematic Errors of the Interstellar Flow Longitude Derived from the Pickup Ion Cutoff

NASA Astrophysics Data System (ADS)

Taut, A.; Berger, L.; Drews, C.; Bower, J.; Keilbach, D.; Lee, M. A.; Moebius, E.; Wimmer-Schweingruber, R. F.

2017-12-01

Complementary to the direct neutral particle measurements performed by e.g. IBEX, the measurement of PickUp Ions (PUIs) constitutes a diagnostic tool to investigate the local interstellar medium. PUIs are former neutral particles that have been ionized in the inner heliosphere. Subsequently, they are picked up by the solar wind and its frozen-in magnetic field. Due to this process, a characteristic Velocity Distribution Function (VDF) with a sharp cutoff evolves, which carries information about the PUI's injection speed and thus the former neutral particle velocity. The symmetry of the injection speed about the interstellar flow vector is used to derive the interstellar flow longitude from PUI measurements. Using He PUI data obtained by the PLASTIC sensor on STEREO A, we investigate how this concept may be affected by systematic errors. The PUI VDF strongly depends on the orientation of the local interplanetary magnetic field. Recently injected PUIs with speeds just below the cutoff speed typically form a highly anisotropic torus distribution in velocity space, which leads to a longitudinal transport for certain magnetic field orientation. Therefore, we investigate how the selection of magnetic field configurations in the data affects the result for the interstellar flow longitude that we derive from the PUI cutoff. Indeed, we find that the results follow a systematic trend with the filtered magnetic field angles that can lead to a shift of the result up to 5°. In turn, this means that every value for the interstellar flow longitude derived from the PUI cutoff is affected by a systematic error depending on the utilized magnetic field orientations. Here, we present our observations, discuss possible reasons for the systematic trend we discovered, and indicate selections that may minimize the systematic errors.

Correlation of biochemical constituents of seminal plasma with semen quality in Teddy goat (Capra hircus) bucks.

PubMed

Umar, S; Ahmad, M; Ahmad, I; Zubair, M; Umar, Z; Qureshi, A S; Manzoor, A; Murtaza, A; Shaukat, A

2018-04-01

This study was planned to determine the relationship between semen quality parameters and the levels of biochemical constituents of seminal plasma of Teddy (Capra hircus) buck semen. For this purpose, semen ejaculates were collected from five mature healthy Teddy bucks. All the experimental bucks were kept under natural environmental conditions. Semen was collected twice in a week for the duration of 6 weeks by Artificial Vagina (AV) in the breeding season (February-April). Two successive ejaculates of single buck were pooled at time of collection, and a total of 60 semen samples were processed for semen analysis. Sperm per cent motility, sperm concentration, dead sperm percentage, morphological abnormal spermatozoa, plasma membrane integrity were correlated with biochemical constituents of seminal plasma. The mean per cent motility (89.18% ± 0.37%), sperm concentration (1.86 ± 0.04 × 10 9 /ml), dead sperm percentage (8.08% ± 0.29%), morphological abnormal spermatozoa (6.05% ± 0.29%) and plasma membrane integrity (88.22% ± 0.34%) were recorded. The seminal plasma contained Na + (144.12 ± 1.59 mEq/L), K + (27.38 ± 0.49 mEq/L), Cl - (65.73 ± 0.45 mEq/L), Ca ++ (9.34 ± 0.22 mg/dl), P (19.32 ± 0.97 mg/dl), aspartate aminotransferase (AST; 26.48 ± 1.30 IU/L), alanine aminotransferase (ALT; 168.47 ± 5.18 IU/L), lactate dehydrogenase (LDH; 215.98 ± 6.06 IU/L), albumin (1.90 ± 0.10 g/dl), globulins (2.08 ± 0.11 g/dl) and total protein (3.98 ± 0.20 g/dl). The collected data were analysed by applying Pearson's correlation coefficients. Dead sperm percentage had negative correlation with sodium (r = -.278, p < .05), albumin (r = -.294, p < .05), globulin (r = -.266, p < .05) and total protein (r = -.295, p < .05). Phosphorus was negatively associated with sperm concentration (r = -.262, p < .05). AST was negatively correlated with plasma membrane integrity (r = -.292, p < .05). It was

Comparative leaf and root anatomy of two Dendrobium species (Orchidaceae) from different habitat in relation to their potential adaptation to drought

NASA Astrophysics Data System (ADS)

Metusala, D.; Supriatna, J.; Nisyawati, Sopandie, D.

2017-07-01

Dendrobium capra and Dendrobium arcuatum are closely related in phylogeny, but they have very contrasting vegetative morphology and habitats. D. capra is known as a species that is well-adapted to dry lowland teak forest habitat in East Java, where most trees drop their leaves in summer, while D. arcuatum has adapted to mid or high land moist forest at elevation up to 800 m dpl. In order to investigate their potential adaptation to drought stress in the climate change era, we have compared and analyzed the leaf and root anatomical characteristics of both species. Transversal sections were made using hand mini microtome, dehydrated in graded alcohol series and stained with safranin 1 % and fastgreen 1 %. Leaf scraping technique has been used to prepare paradermal sections, and then dehydrated in graded alcohol series and stained with safranin 1 %. Quantitative anatomical characteristics between D. capra and D. arcuatum have been compared using a t-test. The result showed that there were significant differences on anatomical characters between both species. Compared to D. arcuatum, D. capra shows more developed anatomical features for adapting to drought and dry condition. These anatomical features were a thicker cuticle, thicker epidermis, presence of hypodermis, thicker mesophyll, broader primary vascular bundle, well developed xylem's sclerenchyma, lower stomatal density, thicker and high proportion of velamen.

Gravitational Radiation from Binary Black Holes: Advances in the Perturbative Approach

NASA Astrophysics Data System (ADS)

Lousto, C. O.

2005-08-01

. Other sources of gravitational waves are the product of excitation of the supermassive black holes present in the core of most of the galaxies in the universe by surrounding stars; such a star will eventually get close enough - presumably through three-body encounters - for the gravitational radiation to play an important role in the further evolution of its orbit and eventually cause it to merge into its supermassive companion. As the mass ratios are expected to be of the order of 10-3 at most, our perturbative expansion represents a fantastic degree of accuracy, allowing detailed analysis of the sources by space-based detectors sensitive to sub-Hertz frequencies, such as LISA - a joint mission of NASA and ESA that plans to launch three spaceships in orbit around the sun during the next decade. The universe can offer us an even more energetic event: when two galaxies collide, the merger of their central supermassive black holes will produce the largest burst of gravitational radiation in the universe. Presumably the mass ratio in this case will be in the range of 1 to 10-3, hence the extreme usefulness of the second-order approach. Let us return to 1997. After decades of being an open problem, the formulae for the self-force were finally available and, it seemed, ready to be applied in specific computations. This inspired a group of young researchers to meet and study in detail the papers containing the solution to the self-force problem. A ranch donated to Caltech by the movie director Frank Capra made the perfect retreat location, and so in 1998 the series of Capra meetings on radiation reaction was born in San Diego, California. Every year since then, the meeting has incorporated new people and become more formally organized. In 1999 the 2nd Capra meeting took place in Dublin, Ireland http://www.lsc-group.phys.uwm.edu/~patrick/ireland99/. In 2000 it returned to Caltech http://www.tapir.caltech.edu/capra3/, and in 2001 I had the opportunity to organize the 4th Capra

Biological monitoring of an agricultural food chain: Soil cadmium and lead ruminant tissues. [Sorghum sudanense (Piper) Stapf-S. bicolor (L. ) Moench (Capra hircus)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brams, E.; Anthony, W.; Weatherspoon, L.

Low-level contamination of a sandy soil with toxicants Cd and Pb at 0.01 to 9.0 and 3.0 to 54.0 mg kg{sup {minus}1} soil induced a significant toxicant accumulation in sudan-sorghum hay (Sorghum sudanense (Piper) Stapf-S. bicolor (L.) Moench) (0.5-5.0 and 0.2-1.5 mg kg{sup {minus}1} dry biomass), respectively. Ingestion of 22 to 222 mg Cd kg{sup {minus}1} body wt. by pregnant dairy goats (Capra hircus) from the consumption of hay over 98 d resulted in a significant, but relatively diminutive accumulation of Cd in the doe livers (0.01-0.02 mg kg{sup {minus}1}) and brain cortex (0.002-0.007 mg kg{sup {minus}1}) fresh wt., butmore » not in doe kidneys and blood averaging 0.028 and 0.002 mg Cd kg{sup {minus}1} fresh tissues, respectively. Fetal blood and liver accumulated 2.0 and 4.0 mg Cd kg{sup {minus}1} fresh tissue, respectively, and fetal kidney exhibited a weak response (0.03-0.47 mg Cd kg{sup {minus}1} fresh tissue) to Cd ingested by the pregnant does. Consumption of 240 to 1230 {mu}g Pb kg{sup {minus}1} body wt. induced 1.0 to 43.0 mg Pb kg{sup {minus}1} fresh tissue in the doe brain cerebellum, but not in the doe liver and blood averaging 0.09 and 0.017 mg Pb kg{sup {minus}1} fresh tissue, respectively, Fetal liver and blood averaged 0.043 and 0.014 mg Pb kg{sup {minus}1} tissue. Only minuscule amounts of soil Cd and Pb were retained in the select animal tissues via the ingestion of this hay. Only one-ten-millionth of labile soil Cd and Pb, respectively, accumulated in the select tissues of the pregnant does via the hay pathway. All these amounts were comparable to the norm. If these select animal tissues were used as food, no deleterious effects to human health should be induced.« less

From the Outside Looking In - Looking Back at Our Heliosphere in Energetic Neutral Atoms

NASA Astrophysics Data System (ADS)

Demajistre, R.; Brandt, P. C.; Gruntman, M.; McNutt, R. L., Jr.; Opher, M.; Roelof, E. C.; Wood, B. E.

2017-12-01

Energetic Neutral Atoms (ENAs) have been used over the past two decades to image space plasmas in planetary magnetospheres as well as the structure of the heliosheath. Any energetic plasma containing singly charged ions embedded in a cold neutral gas will 'glow' in ENAs, and this glow can be analyzed to infer the properties of the source plasma, giving us insight into processes that are difficult to study with the more traditional sensors that use photons/electromagnetic waves as an information carrier. ENA measurements of the heliosphere have (obviously) all been taken from vantage points in the inner heliosphere. ENAs created in the inner heliosphere from the solar wind and Pick Up Ions (PUIs) generally have large outward velocity, and thus do not reach sensors closer to the sun. Thus, the plasma is only 'visible' in ENAs to an inner heliosphere observer after it reaches the termination shock, where its outward motion is slowed and it is heated. This perspective from the inside looking out is convenient to study the outer boundary of the heliophere, but contains no direct information about the plasma and processes occurring in the inner heliosphere. ENA sensors placed outside the heliosphere, conversely would allow us to remotely sense both the inner and outer heliosphere, allowing us full access to the evolution of the solar wind and PUIs as they travel from the sun outward. Further, such a perspective would allow us to more directly measure the boundaries of the heliosphere with the LISM without the obscuration of the inner heliosheath. In this paper, we present modeled views of ENA images from the outside looking in at energies between 0.5 and 100 keV. It is important to note that while measurements of the outer heliosphere have been made by IBEX, Cassini/INCA, SoHO/HSTOF and the Voyagers, there are still important outstanding questions about the global structure and plasma flow patterns in the heliosphere. We will show here how new observations from the

VOYAGER OBSERVATIONS OF MAGNETIC WAVES DUE TO NEWBORN INTERSTELLAR PICKUP IONS: 2–6 au

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aggarwal, Poornima; Taylor, David K.; Smith, Charles W.

We report observations by the Voyager 1 and 2 spacecraft of low-frequency magnetic waves excited by newborn interstellar pickup ions H{sup +} and He{sup +} during 1978–1979 when the spacecraft were in the range from 2 to 6.3 au. The waves have the expected association with the cyclotron frequency of the source ions, are left-hand polarized in the spacecraft frame, and have minimum variance directions that are quasi-parallel to the local mean magnetic field. There is one exception to this in that one wave event that is excited by pickup H{sup +} is right-hand polarized in the spacecraft frame, butmore » similar exceptions have been reported by Cannon et al. and remain unexplained. We apply the theory of Lee and Ip that predicts the energy spectrum of the waves and then compare growth rates with turbulent cascade rates under the assumption that turbulence acts to destroy the enhanced wave activity and transport the associated energy to smaller scales where dissipation heats the background plasma. As with Cannon et al., we find that the ability to observe the waves depends on the ambient turbulence being weak when compared with growth rates, thereby allowing sustained wave growth. This analysis implies that the coupled processes of pitch-angle scattering and wave generation are continuously associated with newly ionized pickup ions, despite the fact that the waves themselves may not be directly observable. When waves are not observed, but wave excitation can be argued to be present, the wave energy is simply absorbed by the turbulence at a rate that prevents significant accumulation. In this way, the kinetic process of wave excitation by scattering of newborn ions continues to heat the plasma without producing observable wave energy. These findings support theoretical models that invoke efficient scattering of new pickup ions, leading to turbulent driving in the outer solar wind and in the IBEX ribbon beyond the heliopause.« less

Challenges in the determination of the interstellar flow longitude from the pickup ion cutoff

NASA Astrophysics Data System (ADS)

Taut, A.; Berger, L.; Möbius, E.; Drews, C.; Heidrich-Meisner, V.; Keilbach, D.; Lee, M. A.; Wimmer-Schweingruber, R. F.

2018-03-01

Context. The interstellar flow longitude corresponds to the Sun's direction of movement relative to the local interstellar medium. Thus, it constitutes a fundamental parameter for our understanding of the heliosphere and, in particular, its interaction with its surroundings, which is currently investigated by the Interstellar Boundary EXplorer (IBEX). One possibility to derive this parameter is based on pickup ions (PUIs) that are former neutral ions that have been ionized in the inner heliosphere. The neutrals enter the heliosphere as an interstellar wind from the direction of the Sun's movement against the partially ionized interstellar medium. PUIs carry information about the spatial variation of their neutral parent population (density and flow vector field) in their velocity distribution function. From the symmetry of the longitudinal flow velocity distribution, the interstellar flow longitude can be derived. Aim. The aim of this paper is to identify and eliminate systematic errors that are connected to this approach of measuring the interstellar flow longitude; we want to minimize any systematic influences on the result of this analysis and give a reasonable estimate for the uncertainty. Methods: We use He+ data measured by the PLAsma and SupraThermal Ion Composition (PLASTIC) sensor on the Solar TErrestrial RElations Observatory Ahead (STEREO A) spacecraft. We analyze a recent approach, identify sources of systematic errors, and propose solutions to eliminate them. Furthermore, a method is introduced to estimate the error associated with this approach. Additionally, we investigate how the selection of interplanetary magnetic field angles, which is closely connected to the pickup ion velocity distribution function, affects the result for the interstellar flow longitude. Results: We find that the revised analysis used to address part of the expected systematic effects obtains significantly different results than presented in the previous study. In particular

Transmission of Helminths between Species of Ruminants in Austria Appears More Likely to Occur than Generally Assumed

PubMed Central

Winter, Jakob; Rehbein, Steffen; Joachim, Anja

2018-01-01

Helminth infections of the gastrointestinal tract and lungs can lead to devastating economical losses to the pastoral based animal production. Farm animals can suffer from malnutrition, tissue damage, and blood loss resulting in impaired production traits and reproduction parameters. In Austria, pastures grazed by sheep, goats, and cattle overlap with the habitats of several species of wild cervids (roe deer, red deer, sika deer, and fallow deer) and bovids (mouflon, chamois, and ibex), and transmission of parasites between different ruminant species seems likely. A complete and updated overview on the occurrence of helminths of domestic and wild ruminants in Austria is presented. Based on these data, intersections of the host spectrum of the determined parasites were depicted. The “liability index” was applied to identify the ruminant species, which most likely transmit parasites between each other. A degree for host specificity was calculated for each parasite species based on the average taxonomic distance of their host species. Of the 73 identified helminth species 42 were identified as generalists, and 14 transmission experiments supported the assumed broad host specificity for 14 generalists and 1 specialist helminth species. Overall, 61 helminths were found to infect more than one host species, and 4 were found in all 10 ruminant species investigated. From these analyses, it can be concluded that a number of helminth parasites of the gastrointestinal tract and the lungs are potentially transmitted between domestic and wild ruminants in Austria. For some parasites and host species, experimental evidence is in support for possible transmission, while for other such studies are lacking. Host preference of different genotypes of the same parasite species may have a confounding effect on the evaluation of cross-transmission, but so far this has not been evaluated systematically in helminths in Austria. Further studies focusing on experimental cross

Interstellar Probe: First Step to the Stars

NASA Astrophysics Data System (ADS)

McNutt, R. L., Jr.

2017-12-01

The idea of an "Interstellar Probe," a robotic spacecraft traveling into the nearby interstellar medium for the purpose of scientific investigation, dates to the mid-1960s. The Voyager Interstellar Mission (VIM), an "accidental" 40-year-old by-product of the Grand Tour of the solar system, has provided initial answers to the problem of the global heliospheric configuration and the details of its interface with interstellar space. But the twin Voyager spacecraft have, at most, only another decade of lifetime, and only Voyager 1 has emerged from the heliosheath interaction region. To understand the nature of the interaction, a near-term mission to the "near-by" interstellar medium with modern and focused instrumentation remains a compelling priority. Imaging of energetic neutral atoms (ENAs) by the Ion Neutral CAmera (INCA) on Cassini and from the Interstellar Boundary Explorer (IBEX) in Earth orbit have provided significant new insights into the global interaction region but point to discrepancies with our current understanding. Exploring "as far as possible" into "pristine" interstellar space can resolve these. Hence, reaching large heliocentric distances rapidly is a driver for an Interstellar Probe. Such a mission is timely; understanding the interstellar context of exoplanet systems - and perhaps the context for the emergence of life both here and there - hinges upon what we can discover within our own stellar neighborhood. With current spacecraft technology and high-capability launch vehicles, such as the Space Launch System (SLS), a small, but extremely capable spacecraft, could be dispatched to the near-by interstellar medium with at least twice the speed of the Voyagers. Challenges remain with payload mass and power constraints for optimized science measurements. Mission longevity, as experienced by, but not designed into, the Voyagers, communications capability, and radioisotope power system performance and lifetime are solvable engineering challenges. Such

A Century after Van Allen's Birth: Conclusion of Reconnaissance of Radiation Belts in the Solar System

NASA Astrophysics Data System (ADS)

Krimigis, S. M.

2014-12-01

On May 1, 1958 in the Great Hall of the US National Academy of Sciences, James A. Van Allen, having instrumented Explorer-1 and follow-on satellites with radiation detectors, announced the discovery of intense radiation at high altitudes above Earth. The press dubbed the doughnut-shaped structures "Van Allen Belts" (VAB). Soon thereafter, the search began for VAB at nearby planets. Mariner 2 flew by Venus in 1962 at a distance of 41,000 km, but no radiation was detected. The Mariner 4 mission to Mars did not observe planet-associated increase in radiation, but scaling arguments with Earth's magnetosphere yielded an upper limit to the ratio of magnetic moments of MM/ME < 0.001 (Van Allen et al, 1965). Similarly, the Mariner 5 flyby closer to Venus resulted in a ratio of magnetic moments < 0.001 (Van Allen et al, 1967), dealing a blow to the expectation that all planetary bodies must possess significant VAB. The flyby of Mercury in 1974 by Mariner 10 revealed a weak magnetic field, but the presence of durably trapped higher energy particles remained controversial until MESSENGER in 2011.The first flybys of Jupiter by Pioneers 10, 11 in 1973 and 1974, respectively, measured a plethora of energetic particles in Jupiter's magnetosphere and established the fact that their intensities were rotationally modulated. Later flybys of Jupiter and Saturn by the two Voyagers in 1979 and 1981 revealed that those magnetospheres possessed their own internal plasma source(s) and radiation belts. Subsequent discoveries of Van Allen belts at Uranus and Neptune by Voyager 2 demonstrated that VAB are the rule rather than the exception in planetary environments. We now know from the Voyagers and through Energetic Neutral Atom images from Cassini and IBEX that an immense energetic particle population surrounds the heliosphere itself. Thus, the reconnaissance of radiation belts of our solar system has been completed, some 56 years after the discovery of the Van Allen Belts at Earth.

18F Fluorocholine Dynamic Time-of-Flight PET/MR Imaging in Patients with Newly Diagnosed Intermediate- to High-Risk Prostate Cancer: Initial Clinical-Pathologic Comparisons.

PubMed

Choi, Joon Young; Yang, Jaewon; Noworolski, Susan M; Behr, Spencer; Chang, Albert J; Simko, Jeffry P; Nguyen, Hao G; Carroll, Peter R; Kurhanewicz, John; Seo, Youngho

2017-02-01

Purpose To investigate the initial clinical value of fluorine 18 ( 18 F) fluorocholine (FCH) dynamic positron emission tomography (PET)/magnetic resonance (MR) imaging by comparing its parameters with clinical-pathologic findings in patients with newly diagnosed intermediate- to high-risk prostate cancer (PCa) who plan to undergo radical prostatectomy. Materials and Methods The institutional review board approved the study protocol, and informed written consent was obtained from all subjects for this HIPAA-compliant study. Twelve men (mean age ± standard deviation, 61.7 years ± 8.4; range, 46-74 years) with untreated intermediate- to high-risk PCa characterized according to Cancer of the Prostate Risk Assessment (CAPRA) underwent preoperative FCH dynamic PET/MR imaging followed by radical prostatectomy between April and November 2015. PET/MR imaging parameters including average and maximum K1 (delivery rate constant) and standardized uptake values (SUVs) and Prostate Imaging Reporting and Data System (PI-RADS) version 2 scores were measured and compared with clinical-pathologic characteristics. For statistical analysis, the Spearman rank correlation and Mann-Whitney U tests were performed. Results Of the PET parameters, maximum SUV of primary tumors showed significant correlations with several clinical-pathologic parameters including serum prostate-specific antigen level (ρ = 0.71, P = .01), pathologic stage (ρ = 0.59, P = .043), and postsurgical CAPRA score (ρ = 0.72, P = .008). The overall PI-RADS score showed significant correlations with pathologic tumor volume (ρ = 0.81, P < .001), percentage of tumor cells with Gleason scores greater than 3 (ρ = 0.59, P = .02), and postsurgical CAPRA score (ρ = 0.58, P = .046). The high-risk postsurgical CAPRA score patient group had a significantly higher maximum SUV than did the intermediate-risk group. Combined PET and MR imaging showed improved sensitivity (88%) for prediction of pathologic extraprostatic

50 CFR 14.4 - What terms do I have to understand?

Code of Federal Regulations, 2010 CFR

2010-10-01

...; Ferret (domestic)—Mustela putorius; Goat—Capra hircus; Horse—Equus caballus; Llama—Lama glama; Pig—Sus... auratus. Birds: Chicken—Gallus domesticus; Ducks & geese—domesticated varieties; Guinea fowl—Numida...

50 CFR 14.4 - What terms do I have to understand?

Code of Federal Regulations, 2013 CFR

2013-10-01

... the requirements of this subchapter B (except for species obtained from wild populations). Mammals...; Ferret (domestic)—Mustela putorius; Goat—Capra hircus; Horse—Equus caballus; Llama—Lama glama; Pig—Sus...

50 CFR 14.4 - What terms do I have to understand?

Code of Federal Regulations, 2011 CFR

2011-10-01

... the requirements of this subchapter B (except for species obtained from wild populations). Mammals...; Ferret (domestic)—Mustela putorius; Goat—Capra hircus; Horse—Equus caballus; Llama—Lama glama; Pig—Sus...

50 CFR 14.4 - What terms do I have to understand?

Code of Federal Regulations, 2014 CFR

2014-10-01

... the requirements of this subchapter B (except for species obtained from wild populations). Mammals...; Ferret (domestic)—Mustela putorius; Goat—Capra hircus; Horse—Equus caballus; Llama—Lama glama; Pig—Sus...

50 CFR 14.4 - What terms do I have to understand?

Code of Federal Regulations, 2012 CFR

2012-10-01

... the requirements of this subchapter B (except for species obtained from wild populations). Mammals...; Ferret (domestic)—Mustela putorius; Goat—Capra hircus; Horse—Equus caballus; Llama—Lama glama; Pig—Sus...

75 FR 34077 - Endangered and Threatened Wildlife and Plants; 90-Day Finding on Five Petitions to List Seven...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-16

...) Habitat requirements for feeding, breeding, and sheltering; (b) Genetics and taxonomy; (c) Historical and...), cattle (Bos taurus), goats (Capra hircus), and axis deer (Axis axis), is considered one of the primary...

Infection levels of protostrongylid nematodes in definitive caprine and intermediate gastropod hosts from Uzbekistan.

PubMed

Kuchboev, A E; Krücken, J; Karimova, R R; Ruziev, B H; Pazilov, A

2017-03-01

Morphological analysis of lungworms collected among Caprinae from Uzbekistan resulted in the identification of four species of Protostrongylidae: Protostrongylus rufescens, Protostrongylus hobmaieri, Spiculocaulus leuckarti and Cystocaulus ocreatus. The following species were recorded as definitive hosts: Ovis aries, Ovis ammon, Ovis vignei, Capra hircus, Capra falconeri and Capra sibirica. The prevalence of P. rufescens reached 45.3%, followed by S. leuckarti and C. ocreatus with 31.7% and P. hobmaieri with 16.9%. The sex ratio ranged between 1:3.1 and 1:6.2, with P. hobmaieri showing the strongest predominance of females over males. The prevalence of infection of small ruminants with protostrongylid nematodes increased with the age of the hosts. Protostrongyles use terrestrial gastropods as intermediate hosts, and infective larvae were found in the species Vallonia costata, Gibbulinopsis signata, Pupilla muscorum, Pseudonapaeus albiplicata, Pseudonapaeus sogdiana, Leucozonella ferghanica, Xeropicta candacharica, Candaharia levanderi and Macrochlamys sogdiana. Xeropicta candacharica was the most abundant gastropod and had the highest prevalence of infection with protostrongylids. Adult X. candacharica had a significantly higher infection intensity than juveniles. The epidemiology of protostrongylid infections is dynamic and subject to considerable changes. Further characterization of the interaction of protostrongylid parasites with their terrestrial gastropods as intermediate hosts and Caprinae as definitive hosts is required to understand these processes and to monitor the effects of changing ecological contexts.

Scientific Achievements of Global ENA Imaging and Future Outlook

NASA Astrophysics Data System (ADS)

Brandt, P. C.; Stephens, G. K.; Hsieh, S. Y. W.; Demajistre, R.; Gkioulidou, M.

2017-12-01

Energetic Neutral Atom (ENA) imaging is the only technique that can capture the instantaneous global state of energetic ion distributions in planetary magnetospheres and from the heliosheath. In particular at Earth, ENA imaging has been used to diagnose the morphology and dynamics of the ring current and plasma sheet down to several minutes time resolution and is therefore a critical tool to validate global ring current physics models. However, this requires a detailed understanding for how ENAs are produced from the ring current and inversion techniques that are thoroughly validated against in-situ measurements. To date, several missions have carried out planetary and heliospheric ENA imaging including Cassini, JUICE, IBEX of the heliosphere, and POLAR, Astrid-1, Double Star, TWINS and IMAGE of the terrestrial magnetosphere. Because of their path-finding successes, a future global-imaging mission concept, MEDICI, has been recommended in the Heliophysics Decadal Survey. Its core mission consists of two satellites in one circular, near-polar orbit beyond the radiation belts at around 8 RE, with ENA, EUV and FUV cameras. This recommendation has driven the definition of smaller mission concepts that address specific science aspects of the MEDICI concept. In this presentation, we review the past scientific achievements of ENA imaging with a focus on the terrestrial magnetosphere from primarily the NASA IMAGE and the TWINS missions. The highlighted achievements include the storm, sub-storm and quiet-time morphology, dynamics and pitch-angle distributions of the ring current, global differential acceleration of protons versus O+ ions, the structure of the global electrical current systems associated with the plasma pressure of protons and O+ ions up to around 200 keV, and the relation between ring current and plasmasphere. We discuss the need for future global observations of the ring current, plasma sheet and magnetosheath ion distributions based and derive their

Late Pleistocene leopards across Europe - northernmost European German population, highest elevated records in the Swiss Alps, complete skeletons in the Bosnia Herzegowina Dinarids and comparison to the Ice Age cave art

NASA Astrophysics Data System (ADS)

Diedrich, Cajus G.

2013-09-01

European leopard sites in Europe demonstrate Early/Middle Pleistocene out of Africa lowland, and Late Pleistocene Asian alpine migrations being driven by climatic changes. Four different European Pleistocene subspecies are known. The final European Late Pleistocene “Ice Age leopard” Panthera pardus spelaea (Bächler, 1936) is validated taxonomically. The skull shows heavy signs of sexual dimorphism with closest cranial characters to the Caucasian Panthera pardus ciscaucasica (Persian leopard). Late Pleistocene leopards were distributed northernmost, up to S-England with the youngest stratigraphic records by skeletons and cave art in the MIS 2/3 (about 32,000-26,000 BP). The oldest leopard painting left by Late Palaeolithics (Aurignacians/Gravettians) in the Chauvet Cave (S-France) allows the reconstruction of the Ice Age leopard fur spot pattern being close to the snow or Caucasian leopards. The last Ice Age glacial leopard habitat was the mountain/alpine boreal forest (not mammoth steppe lowland), where those hunted even larger prey such as alpine game (Ibex, Chamois). Into some lairs, those imported their prey by short-term cave dwelling (e.g. Baumann's Cave, Harz Mountains, Germany). Only Eurasian Ice Age leopards specialized, similar as other Late Pleistocene large felids (steppe lions), on cave bear predation/scavenging partly very deep in caves. In Vjetrenica Cave (Dinarid Mountains, Bosnia Herzegovina), four adult leopards (two males/two females) of the MIS 3 were found about two km deep from the entrance in a cave bear den, near to one cave bear skeleton, that remained articulated in its nest. Leopards died there, partly being trapped by raising water levels of an active ponor stream, but seem to have been killed possibly either, similar as for lions known, in battles with cave bears in several cave bear den sites of Europe (e.g. Baumann's Cave, Wildkirchli Cave, Vjetrenica Cave). At other large cave sites, with overlap of hyena, wolf and dhole dens at

Heliospheric and Local Interstellar Space Weathering Environments of Extreme Kuiper Belt Objects

NASA Astrophysics Data System (ADS)

Cooper, J. F.; Sturner, S. J.

2017-12-01

Since the first direct detection of a Kuiper Belt Object (KBO), (15760) 1992 QB1, in 1992, observational evidence via direct detection has accumulated for thousands (and via inference for hundreds of thousands) of small to large icy bodies that populate the solar system from within the supersonic heliosphere out into the local interstellar medium (LISM). These objects have mainly been discovered when within the heliosphere but the orbits of the more extreme KBOs, fifteen percent of the total known KBO population, take them out into the heliosheath and about half of these continue further out into the LISM. Continuing observations will inevitably increase the known inventory of extreme KBOs, possibly including a few that may be accessible as near-encounter targets for a future interstellar probe mission directed beyond 200 AU into the upstream LISM. Here we review the known population of extreme KBOs and address the properties of the heliospheric and LISM environments that could potentially affect object visibility and surface composition. The twin Voyager spacecraft are our present source of in-situ measurements for the plasma and energetic particle environments, except that there are no plasma data from Voyager 1. Voyager 1 and 2 are now respectively in the LISM and the heliosheath after earlier passing through the outer regions of the supersonic heliosphere upstream of the solar wind termination shock. The Voyager data coverage is complemented by energetic neutral atom (ENA) measurements of the Interstellar Background Explorer (IBEX) and Cassini Orbiter spacecraft that can be used to infer proton flux spectra from models of ENA production in the outer heliosphere. High radiation background in the LISM has precluded sub-MeV energetic ion measurements by Voyager 1, so we use limits from Cummings et al. (ApJ, 2016) for molecular cloud ionization. This would be an important energy region to cover with interstellar probe measurements. These sources of plasma and

Voyager in-situ and Cassini Remote Measurements Suggest a Bubble-like Shape for the Global Heliosphere

NASA Astrophysics Data System (ADS)

Dialynas, K.; Krimigis, S. M.; Mitchell, D. G.; Decker, R. B.; Roelof, E. C.

2017-12-01

The Low Energy Charged Particle (LECP) in situ measurements from Voyager 1 and Voyager 2 (V1, V2) have revealed the reservoir of ions and electrons that constitute the heliosheath after crossing the termination shock 35 deg north and 32 deg south of the ecliptic plane at 94 and 84 astronomical units (1 AU=1.5x108 km), respectively. In August 2012, at 121.6 AU, V1 crossed the heliopause to enter the interstellar space, while V2 remains in the heliosheath since 2007. The advent of Energetic Neutral Atom (ENA, produced through charge exchange between ions and neutral particles flowing through the heliosphere) imaging, has revealed the global nature of the heliosheath at both high (5.2-55 keV, Cassini/Ion and Neutral Camera-INCA, from 10 AU) and low (<6 keV, Interstellar Boundary Explorer-IBEX, from 1 AU) energies. The presence of the two Voyagers measuring ions locally in the heliosheath contemporaneously with INCA global imaging through ENA in overlapping energy bands provides a powerful tool for examining the spatial, temporal, and spectral evolution of the source hot plasma ions. Here we report 5.2-55 keV ENA global images of the heliosphere from Cassini/INCA and compare them with V1,2/LECP 28-53 keV ions measured within the heliosheath over a 13-year period (2003-2016). The similarity between the time profiles of ENA and ions establish that the heliosheath ions are the source of ENA. These measurements also demonstrate that the heliosphere responds promptly, within 2-3 years, to outward propagating solar wind changes (manifested in solar sunspot numbers and solar wind energy input) in both the upstream (nose) and downstream (tail) hemispheres. These results, taken together with the V1 measurement of a 0.5 nT interstellar magnetic field and the enhanced ratio between particle pressure and magnetic pressure in the heliosheath, constrain the shape of the global heliosphere: by contrast to the magnetosphere-like heliotail (that past modeling broadly assumed for more

Limiting Charged Particle Flux Spectrum at the Heliopause and Beyond

NASA Astrophysics Data System (ADS)

Cooper, J. F.

2009-04-01

-called "anomalous component" ions at higher MeV energies. Unlimited extension of the presently observed suprathermal ion spectrum into the neutral gas environment beyond the heliopause, e.g. within the hydrogen wall region, would also impact energy and directional distributions of energetic neutral atoms now being measured from Earth orbit by the Interstellar Boundary Explorer (IBEX) mission.

Earth Observations taken by the Expedition 16 Crew

NASA Image and Video Library

2007-11-16

extremely rare species are found here, such as the Gelada baboon with its thick coat to protect against the cold; the critically-endangered Walia ibex with long, heavy scimitar-like horns; and the Ethiopian wolf--also known as the Semien jackal, the "most endangered canid."

A link between Late Pliensbachian organic matter preservation and the Spinatum Chronozone icehouse event

NASA Astrophysics Data System (ADS)

Silva, Ricardo L.; Duarte, Luís. V.

2014-05-01

It is recognized today that the "greenhouse" Mesozoic Era includes several short-lived icehouse episodes. One occurred during the Spinatum Chronozone (Late Pliensbachian), which immediately preceded a 2nd-order extinction event and a major carbon cycle perturbation associated to the Early Toarcian Oceanic Anoxic Event. The Lower Jurassic hemipelagic carbonate series of the Lusitanian Basin (Portugal) mark the hinge zone between the Tethyan (Mediterranean) and Boreal (North-European) realms. Here, one of the most obvious features is the organic-rich nature of the majority of the Ibex-Margaritatus chronozones (Pliensbachian) series (Marly-limestones with organic-rich facies member of the Vale das Fontes Formation), capped by a regressive limestone unit of uppermost Margaritatus-lowermost Polymorphum (Toarcian) chronozones (Lemede Formation). The Pliensbachian organic-rich deposition (observed in several locations around the world) is coeval with a positive carbon isotopic excursion recorded in carbonates and organic substrates. For the Lusitanian Basin, evidences points toward the occurrence of brief "hot snaps" prior to the onset of the icehouse interval of Spinatum age. We demonstrate that cooling was preceded by several episodes of organic matter preservation, most likely driven by extreme warming, coupled with high oceanic productivity and stratified (thermally?) epeiric areas. These "hot snaps" allowed the rapid but short-lived expansion of Tethyan ammonites into Boreal domains. They also promoted widespread mucilage and microbial outbreaks preserved in the Lusitanian Basin as black shales, resulting in organic matter deposition and geological carbon storage. So far, the causes for these "hot snaps" remain unclear. This chain of events most likely triggered and/or amplified the Spinatum Chronozone icehouse event, which led to permafrost and/or methane gas hydrates in locations easily disturbed by the subsequent Early Toarcian warming, or/and increased volcanic

SU-D-207B-07: Development of a CT-Radiomics Based Early Response Prediction Model During Delivery of Chemoradiation Therapy for Pancreatic Cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Klawikowski, S; Christian, J; Schott, D

Purpose: Pilot study developing a CT-texture based model for early assessment of treatment response during the delivery of chemoradiation therapy (CRT) for pancreatic cancer. Methods: Daily CT data acquired for 24 pancreatic head cancer patients using CT-on-rails, during the routine CT-guided CRT delivery with a radiation dose of 50.4 Gy in 28 fractions, were analyzed. The pancreas head was contoured on each daily CT. Texture analysis was performed within the pancreas head contour using a research tool (IBEX). Over 1300 texture metrics including: grey level co-occurrence, run-length, histogram, neighborhood intensity difference, and geometrical shape features were calculated for each dailymore » CT. Metric-trend information was established by finding the best fit of either a linear, quadratic, or exponential function for each metric value verses accumulated dose. Thus all the daily CT texture information was consolidated into a best-fit trend type for a given patient and texture metric. Linear correlation was performed between the patient histological response vector (good, medium, poor) and all combinations of 23 patient subgroups (statistical jackknife) determining which metrics were most correlated to response and repeatedly reliable across most patients. Control correlations against CT scanner, reconstruction kernel, and gated/nongated CT images were also calculated. Euclidean distance measure was used to group/sort patient vectors based on the data of these trend-response metrics. Results: We found four specific trend-metrics (Gray Level Coocurence Matrix311-1InverseDiffMomentNorm, Gray Level Coocurence Matrix311-1InverseDiffNorm, Gray Level Coocurence Matrix311-1 Homogeneity2, and Intensity Direct Local StdMean) that were highly correlated with patient response and repeatedly reliable. Our four trend-metric model successfully ordered our pilot response dataset (p=0.00070). We found no significant correlation to our control parameters: gating (p=0

Climatic and palaeoceanographic changes during the Pliensbachian (Early Jurassic) inferred from clay mineralogy and stable isotope (C-O) geochemistry (NW Europe)

NASA Astrophysics Data System (ADS)

Bougeault, Cédric; Pellenard, Pierre; Deconinck, Jean-François; Hesselbo, Stephen P.; Dommergues, Jean-Louis; Bruneau, Ludovic; Cocquerez, Théophile; Laffont, Rémi; Huret, Emilia; Thibault, Nicolas

2017-02-01

events'), coincide with regressive intervals, indicating emersion of the London Brabant Massif and thus suggesting that an amplitude of sea-level change high enough to be linked to glacio-eustasy. This mechanism is consistent with sedimentological and geochemical evidences of continental ice growth notably during the Latest Pliensbachian (Spinatum Zone), and possibly during the Early Pliensbachian (late Jamesoni/early Ibex Zones).

Glucose 6-phosphate dehydrogenase: isoenzymatic pattern in Oesophagostomum venulosum, Trichuris ovis and T. suis.

PubMed

Rodriguez, B; Cutillas, C; German, P; Guevara, D

1991-12-01

In the present communication we have studied the isoenzymatic pattern activity of the glucose 6-phosphate dehydrogenase (G6PD) in Oesophagostomum venulosum, Trichuris ovis and T. suis, parasites of Capra hircus (goat), Ovis aries (sheep) and Sus scrofa domestica (pig) respectively, by polyacrylamide gel electrophoresis. Different phenotypes have been observed in the G6PD isoenzymatic pattern activity in males and females of Oesophagostomum venulosum. Furthermore, G6PD activity has been assayed in Trichuris ovis collected from Ovis aries and Capra hircus. No differences have been observed in the isoenzymatic patterns attending to the different hosts. All the individuals exhibited one single band or two bands; this suggests a monomeric condition for G6PD in T. ovis. In T. suis the enzyme G6PD appeared as a single electrophoretic band in about 85.7% of the individuals.

Restoring critical habitat for Hawaii's endangered pall la by reducing ungulate populations

Treesearch

Paul G. Scowcroft; C. Eugene. Conrad

1988-01-01

Drastically reducing populations of feral sheep (Ovis aries), mouflon sheep (Ovis musimon), feral-mouflon hybrids, and feral goats (Capra hircus) on Mauna Kea were key management actions done to promote recovery of critical habitat for palila Loxioides bailleui), an endangered Hawaiian...

Breaking the Status Quo: Information and the Future Force

DTIC Science & Technology

2012-03-12

Bonds. Hollywood rolled out Movietone news releases before every cinema offering, and stalwarts such as Frank Capra produced films destined to stir...report commissioned by the French Joint Forces Centre for Concept Development, Doctrine, and Experimentation – recommended that France adopt this

Critical asset and portfolio risk analysis: an all-hazards framework.

PubMed

Ayyub, Bilal M; McGill, William L; Kaminskiy, Mark

2007-08-01

This article develops a quantitative all-hazards framework for critical asset and portfolio risk analysis (CAPRA) that considers both natural and human-caused hazards. Following a discussion on the nature of security threats, the need for actionable risk assessments, and the distinction between asset and portfolio-level analysis, a general formula for all-hazards risk analysis is obtained that resembles the traditional model based on the notional product of consequence, vulnerability, and threat, though with clear meanings assigned to each parameter. Furthermore, a simple portfolio consequence model is presented that yields first-order estimates of interdependency effects following a successful attack on an asset. Moreover, depending on the needs of the decisions being made and available analytical resources, values for the parameters in this model can be obtained at a high level or through detailed systems analysis. Several illustrative examples of the CAPRA methodology are provided.

Lice induced immuno-oxidative wreckage of goats.

PubMed

Ajith, Y; Dimri, U; Singh, Shanker K; Gopalakrishnan, A; Devi, Gopinath; Verma, M R; Joshi, Vivek; Alam, Shahjahan

2017-08-15

The present study aimed to evaluate the immuno-oxidative patho-biology of lice infestation in goats. Sixty goats were divided into five groups; sucking lice (Linognathus africanus) infested (Group 1, n=12), chewing lice (Bovicola caprae) infested-mild (Group 2, n=12), chewing lice (B. caprae) infested-moderate (Group 3, n=12), chewing lice (B. caprae) infested-severe (Group 4, n=12) and healthy control (Group 5, n=12). To assess the pathological changes, markers of oxidative stress (lipid peroxidation-LPO, reduced glutathione-GSH, superoxide dismutase-SOD, Catalase-CAT and total antioxidant capacity-TAC), the markers of immune status (Tumour necrosis factor alpha- TNF-α, Interleukin-10- IL-10, Transforming growth factor beta 1- TGF-β1, ratios of TNF-α/IL-10 and TNF-α/TGF-β1) and hemato-biochemical status were evaluated. Significant anemia, hypoglycemia, hypoproteinemia and hypoalbuminemia were observed in caprine pediculosis irrespective of the type of lice infested. Remarkably increased oxidative stress was observed in chewing lice infested goats and no significant changes in oxidative stress markers were observed in sucking lice infested goats. TGF-β mediated suppression of Th1 and Th2 immune responses was observed in sucking lice infested goats; whereas, a Th2 cytokine dominant inflammatory response was observed in chewing lice infested goats. From the present study, it may be concluded that sucking lice infestation produces remarkable immunosuppression and chewing lice infestation produces significant oxidative stress and inflammatory responses in goats. Copyright © 2017 Elsevier B.V. All rights reserved.

Bovine Tuberculosis

USDA-ARS?s Scientific Manuscript database

Tuberculosis (TB) in animals and humans may result from exposure to bacilli within the Mycobacterium tuberculosis complex (i.e., M. tuberculosis, M. bovis, M. africanum, M. pinnipedii, M. microti, M. caprae, or M. canetti). Mycobacterium bovis is the species most often isolated from tuberculous catt...

Bovine tuberculosis

USDA-ARS?s Scientific Manuscript database

Tuberculosis (TB) in animals and humans may result from exposure to bacilli within the Mycobacterium tuberculosis complex (i.e., M. tuberculosis, M. bovis, M. africanum, M. pinnipedii, M. microti, M. caprae, or M. canetti) . Mycobacterium bovis is the species most often isolated from tuberculous cat...

Research update: finishing lambs and meat goat kids on pasture

USDA-ARS?s Scientific Manuscript database

Traditional sheep (Ovis aries), hair sheep and meat goat (Capra hircus) industries are growing rapidly in the Appalachian Region to help produce meats for ethnic markets. This niche market offers an economic opportunity for owners of small farms. Control of gastrointestinal (GI) parasites in goats...

Bovine Tuberculosis Vaccine Efficacy Studies: Neonatal Calves and White-tailed Deer

USDA-ARS?s Scientific Manuscript database

Introduction Tuberculosis (TB) in humans and animals may result from exposure to bacilli within the Mycobacterium tuberculosis complex (i.e., M. tuberculosis, M. bovis, M. africanum, M. pinnipedi, M. microti, M. caprae, or M. canetti)(#1). Mycobacterium bovis is the species most often isolated from ...

Red deer as maintenance host for bovine tuberculosis, Alpine region.

PubMed

Fink, Maria; Schleicher, Corina; Gonano, Monika; Prodinger, Wolfgang M; Pacciarini, Maria; Glawischnig, Walter; Ryser-Degiorgis, Marie-Pierre; Walzer, Chris; Stalder, Gabrielle L; Lombardo, Dorotea; Schobesberger, Hermann; Winter, Petra; Büttner, Mathias

2015-03-01

To estimate the prevalence of bovine tuberculosis in the Alpine region, we studied the epidemiology of Mycobacterium caprae in wildlife during the 2009-2012 hunting seasons. Free-ranging red deer (Cervus elaphus) were a maintenance host in a hot-spot area, mainly located in Austria.

Practitioner Research and Literacy Studies: Toward More Dialogic Methodologies

ERIC Educational Resources Information Center

Simon, Rob; Campano, Gerald; Broderick, Debora; Pantoja, Alicia

2012-01-01

This article examines the potential of practitioner research to contribute to understandings of critical and transformative literacy theories. Drawing upon the work of intellectual historian Dominick LaCapra (2004), we investigate how practitioner research can reconcile theories proliferated from universities with those generated by practitioners,…

Rethinking School Lunch: Education for Sustainability in Practice

ERIC Educational Resources Information Center

Stone, Michael K.

2007-01-01

This paper complements Fritjof Capra's paper in this issue, "Sustainable Living, Ecological Literacy, and the Breath of Life." It explores how concepts essential to ecological literacy can also guide strategies for overcoming barriers to introducing integrated, multidisciplinary pedagogy into school curricula. It examines how the crisis…

Use of scanning electron microscopy to confirm the identity of lice infesting communally grazed goat herds.

PubMed

Sebei, P J; McCrindle, C M E; Green, E D; Turner, M L

2004-06-01

Lice have been described on goats in commercial farming systems in South Africa but not from flocks on communal grazing. During a longitudinal survey on the causes of goat kid mortality, conducted in Jericho district, North West Province, lice were collected from communally grazed indigenous goats. These lice were prepared for and viewed by scanning electron microscopy, and micro-morphological taxonomic details are described. Three species of lice were found in the study area and identified as Bovicola caprae, Bovicola limbatus and Linognathus africanus. Sucking and biting lice were found in ten of the 12 herds of goats examined. Lice were found on both mature goats and kids. Bovicola caprae and L. africanus were the most common biting and sucking lice respectively in all herds examined. Scanning electron microscopy revealed additional features which aided in the identification of the louse species. Photomicrographs were more accurate aids to identification than the line drawings in the literature and facilitated identification using dissecting microscope.

Single-molecule sequencing and conformational capture enable de novo mammalian reference genomes

USDA-ARS?s Scientific Manuscript database

Genome assemblies have been produced for numerous species as a result of advances in sequencing technologies. However, many of the assemblies are fragmented, with many gaps, ambiguities, and errors. We use the genome of the domestic goat (Capra hircus) to demonstrate current state of the art for ef...

Effect of Contemplative Pedagogy on the Ecoliteracy of Undergraduate Public State University Students

ERIC Educational Resources Information Center

Lees, Michael

2017-01-01

Undergraduate students lack the opportunity and environment to contemplate and develop ecoliteracy skills that serve to integrate subject matter into their everyday experiences. Ecoliteracy is grounded in Capra's web of life theoretical framework and represents students' capacities to read world systems objectively with their head, heart, hands,…

A serologic survey of viral infections in captive ungulates in Turkish zoos.

PubMed

Yeşilbağ, Kadir; Alpay, Gizem; Karakuzulu, Hatice

2011-03-01

Zoos and zoologic gardens make optimal environments for interspecies transmission of viral infections. There are seven zoos and several small zoologic collections in Turkey. This study aimed to determine the current status of viral infections in captive ungulates living in these environments. Blood samples were taken from 163 captive animals from two zoos. There were 39 Cameroon sheep (Ovis ammon f aries), 11 Barbary sheep (Ammotragus lervia), 57 pygmy goats (Capra hircus), 9 Angora goats (Capra hircus), 21 mountain goats (Capra aegagrus-aegagrus), 7 llamas (Lama glama), 8 Persian goitred gazelle (Gazella subgutturosa subgutturosa), 7 Caspian red deer (Cervus elaphus maral), 2 fallow deer (Dama dama), and 2 camels (Camelus dromedarius). Antibodies against bovine viral diarrhea virus (BVDV), bovine herpesvirus-1 (BHV-1), bovine adenoviruses (BAV-1 and -3), parainfluenzavirus 3 (PI-3), and bluetongue viruses (BTV-4 and -9) were investigated using the virus neutralization test, and malignant catarrhal fever (MCF) antibodies were screened by ELISA. All animals were negative for BVDV and BHV-1 antibodies. Seroprevalence of BAV-1, BAV-3, PI-3, BRSV, BT-4, BT-9, and MCF were detected as follows: 46.6%, 60.1%, 0.6%, 7.3%, 1.8%, 1.2%, and 51.6%, respectively. Seroprevalence of BAVs and MCF were more common than all other viruses (P < 0.0001). Ten sheep (37.0%), 48 goats (84.2), and 1 Ilama (14.2%) were the only species positive for MCF antibodies. Prevalence of BRSV and MCF antibodies were found to be significantly higher in goats than in sheep. BTV antibodies were detected both in Cameroon sheep and mountain goats and suggest that zoo animals are at risk for BTV in endemic regions.

Revision of the Alycaeidae of China, Laos and Vietnam (Gastropoda: Cyclophoroidea) I: The genera Dicharax and Metalycaeus.

PubMed

Páll-Gergely, Barna; Hunyadi, András; Sáng, Đức Đỗ; Naggs, Fred; Asami, Takahiro

2017-10-11

This is the first part of the revision of the Alycaeidae of China, Laos and Vietnam. Here we revise the species hitherto classified in Chamalycaeus Möllendorff, 1897 (genera Dicharax and Metalycaeus in this study). We show that no Chamalycaeus live in the region, and the alycaeid species of the investigated region can be classified into five genera: Alycaeus Baird, 1850, Dicharax Kobelt & Möllendorff, 1900, Dioryx Benson, 1859, Metalycaeus Pilsbry, 1900 and Pincerna Preston, 1907. We propose Dioryx dautzenbergi Páll-Gergely nom. nov. as a replacement name for Alycaeus (Dioryx) major Bavay & Dautzenberg, 1900, non Alycæus (Dioryx) granum var. major Godwin-Austen, 1893. Alycaeus anceyi Mabille, 1887, A. eydouxi Venmans, 1956, A. mouhoti L. Pfeiffer, 1862, A. rolfbrandti Maassen, 2006 and A. vanbuensis Bavay & Dautzenberg, 1900 are retained in Alycaeus. Alycaeus costulosa Bavay & Dautzenberg, 1912 and A. maolanensis Luo, Zhang & Zhuo 2009 were transferred to Pincerna. We examined newly collected specimens and the type specimens of all species with the exception of the following: A. elevatus Heude, 1886, A. expansus Heude, 1890, A. neglectus Heude, 1885, Chamalycaeus libonensis Chen, Li & Luo 2003, C. panshiensis Chen, 1989, C. tangmaiensis Chen & Zhang, 2001, C. zayuensis Zhang, Chen & Zhou, 2008. Fifteen new species are described as follows: Dicharax (?) abdoui Páll-Gergely, n. sp., Dicharax (?) alticola Páll-Gergely & Hunyadi n. sp., Dicharax (?) ellipticus Páll-Gergely n. sp., Dicharax (?) immaculatus Páll-Gergely n. sp., Dicharax bison Páll-Gergely & Hunyadi n. sp., Dicharax draco Páll-Gergely & Hunyadi n. sp., Dicharax imitator Páll-Gergely & Hunyadi n. sp., Dicharax microcostatus Páll-Gergely n. sp., Dicharax micropolitus Páll-Gergely & Hunyadi n. sp., Dicharax robustus Páll-Gergely & Hunyadi, n. sp., Metalycaeus (?) awalycaeoides Páll-Gergely & Hunyadi n. sp., Metalycaeus (?) ibex Páll-Gergely & Hunyadi n. sp., Metalycaeus laosensis P�

Plasma surrounding the global heliosphere at large distances controlled by the solar cycle

NASA Astrophysics Data System (ADS)

Dialynas, Konstantinos; Krimigis, Stamatios; Mitchell, Donald; Decker, Robert; Roelof, Edmond

2016-04-01

The past decade can be characterized by a series of key, groundbreaking remote energetic neutral atom (ENA) images (INCA, IBEX) and in-situ ion (Voyager 1 & 2) observations concerning the characteristics and interactions of the heliosphere with the Local Interstellar Medium (LISM). Voyagers 1 and 2 (V1, V2) discovered the reservoir of ions and electrons that constitute the heliosheath (HS) after crossing the termination shock (TS) 35deg north and 32deg south of the ecliptic plane at 94 and 84 astronomical units (1 AU= 1.5 x108 km), respectively. The in situ measurements by each Voyager were placed in a global context by remote sensing images using ENA obtained with the Ion and Neutral Camera (INCA) onboard Cassini orbiting Saturn. The ENA images contain a 5.2-55 keV hydrogen (H) ENA region (Belt) that loops through the celestial sphere and contributes to balancing the pressure of the interstellar magnetic field (ISMF). The success of any future mission with dedicated ENA detectors (e.g. the IMAP mission), highly depends on the antecedent understanding of the details of the plasma processes in the Heliosphere as revealed by remote sensing of the plasma environment characteristics. Therefore, we address here one of the remaining and most important questions: "Where do the 5-55 keV ENAs that INCA measures come from?". We analyzed INCA all-sky maps from 2003 to 2015 and compare the solar cycle (SC) variation of the ENAs in both the nose (upstream) and anti-nose (downstream) directions with the intensities of > 30 keV ions (source of ENA through charge exchange-CE with H) measured in-situ by V1 and V2, in overlapping energy bands ~30-55 keV. ENA intensities decrease during the declining phase of SC23 by ~x3 from 2003 to 2011 but recover through 2014 (SC24); similarly, V1 and V2 ion intensities also decrease and then recover through 2014. The similarity of time profiles of remotely sensed ENA and locally measured ions are consistent with (a) ENA originating in the HS

Evidence for local and global redox conditions at an Early Ordovician (Tremadocian) mass extinction

NASA Astrophysics Data System (ADS)

Edwards, Cole T.; Fike, David A.; Saltzman, Matthew R.; Lu, Wanyi; Lu, Zunli

2018-01-01

sections from the distal and deeper part of the basin (Shingle Pass and Meiklejohn Peak) preserve synchronous global (δ13C and δ34S) and water column (I/Ca) evidence for anoxia, but not at the more proximal section (Ibex, UT). Although geochemical and paleontological evidence point toward anoxia as the driver of this Early Ordovician extinction event, differences between I/Ca and δ13C-δ34S signals suggest regional variation in the timing, extent, and persistence of anoxia.

Addressing Barriers to Ecological Literacy

ERIC Educational Resources Information Center

Monaghan, Kim; Curthoys, Lesley

2008-01-01

Capra defines ecological literacy as "understanding the basic principles of ecology and being able to embody them in daily life." Roth describes ecological literacy as "the capacity to perceive and interpret the relative health of environmental systems and to take appropriate action to maintain, restore, or improve the health of…

78 FR 73173 - Endangered and Threatened Wildlife and Plants; Listing the Straight-Horned Markhor as Threatened...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-05

... Club, African Safari Club of Florida, The Conklin Foundation, Grand Slam Club/Ovis, Wild Sheep... had reached a critical level, estimated at fewer than 200 (Ahmed et al. 2001, p. 4; Johnson 1994b, p... the markhor at the species level (Capra falconeri) was transferred from CITES Appendix II to Appendix...

Feral goats in the Hawaiian Islands: understanding the behavioral ecology of nonnative ungulates with GPS and remote sensing technology

Treesearch

Mark Chynoweth; Creighton M. Litton; Christopher A. Lepczyk; Susan Cordell

2010-01-01

Nonnative feral ungulates have both direct and indirect impacts on native ecosystems. Hawai`i is particularly susceptible to biological invasions, as the islands have evolved in extreme geographic isolation. In this paper we explore the ecological impacts of nonnative feral goats (Capra hircus) in the Hawaiian Islands, including both the current...

Home range use and movement patterns of non-native feral goats in a tropical island montane dry landscape

Treesearch

Mark W. Chynoweth; Christopher A. Lepczyk; Creighton M. Litton; Steven C. Hess; James R. Kellner; Susan Cordell; Lalit Kumar

2015-01-01

Advances in wildlife telemetry and remote sensing technology facilitate studies of broad-scale movements of ungulates in relation to phenological shifts in vegetation. In tropical island dry landscapes, home range use and movements of non-native feral goats (Capra hircus) are largely unknown, yet this information is important to help guide the...

7 CFR 760.903 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., ruminant mammal of the genus Capra, including Angora goats. Goats are further defined by sex (bucks and does) and age (kids). Kid means a goat less than 1 year old. Lamb means a sheep less than 1 year old..., turkeys, ducks, and geese. Poultry are further delineated by sex, age, and purpose of production as...

7 CFR 760.903 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., ruminant mammal of the genus Capra, including Angora goats. Goats are further defined by sex (bucks and does) and age (kids). Kid means a goat less than 1 year old. Lamb means a sheep less than 1 year old..., turkeys, ducks, and geese. Poultry are further delineated by sex, age, and purpose of production as...

7 CFR 760.903 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., ruminant mammal of the genus Capra, including Angora goats. Goats are further defined by sex (bucks and does) and age (kids). Kid means a goat less than 1 year old. Lamb means a sheep less than 1 year old..., turkeys, ducks, and geese. Poultry are further delineated by sex, age, and purpose of production as...

7 CFR 760.903 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., ruminant mammal of the genus Capra, including Angora goats. Goats are further defined by sex (bucks and does) and age (kids). Kid means a goat less than 1 year old. Lamb means a sheep less than 1 year old..., turkeys, ducks, and geese. Poultry are further delineated by sex, age, and purpose of production as...

Genetic homogeneity of goat malaria parasites in Asia and Africa suggests their expansion with domestic goat host.

PubMed

Kaewthamasorn, Morakot; Takeda, Mika; Saiwichai, Tawee; Gitaka, Jesse N; Tiawsirisup, Sonthaya; Imasato, Yuhei; Mossaad, Ehab; Sarani, Ali; Kaewlamun, Winai; Channumsin, Manun; Chaiworakul, Suchart; Katepongpun, Wichit; Teeveerapunya, Surapong; Panthong, Jarus; Mureithi, Dominic K; Bawm, Saw; Htun, Lat Lat; Win, Mar Mar; Ismail, Ahmed Ali; Ibrahim, Abdalla Mohamed; Suganuma, Keisuke; Hakimi, Hassan; Nakao, Ryo; Katakura, Ken; Asada, Masahito; Kaneko, Osamu

2018-04-11

Plasmodium was first identified in a goat in Angola in 1923, and only recently characterized by DNA isolation from a goat blood sample in Zambia. Goats were first domesticated in the Fertile Crescent approximately 10,000 years ago, and are now globally distributed. It is not known if the Plasmodium identified in African goats originated from parasites circulating in the local ungulates, or if it co-evolved in the goat before its domestication. To address this question, we performed PCR-based surveillance using a total of 1,299 goat blood samples collected from Sudan and Kenya in Africa, Iran in west Asia, and Myanmar and Thailand in southeast Asia. Plasmodium DNA was detected from all locations, suggesting that the parasite is not limited to Africa, but widely distributed. Whole mitochondrial DNA sequences revealed that there was only one nucleotide substitution between Zambian/Kenyan samples and others, supporting the existence of a goat-specific Plasmodium species, presumably Plasmodium caprae, rather than infection of goats by local ungulate malaria parasites. We also present the first photographic images of P. caprae, from one Kenyan goat sample.

Prediction of Prostate Cancer Recurrence Using Quantitative Phase Imaging

NASA Astrophysics Data System (ADS)

Sridharan, Shamira; Macias, Virgilia; Tangella, Krishnarao; Kajdacsy-Balla, André; Popescu, Gabriel

2015-05-01

The risk of biochemical recurrence of prostate cancer among individuals who undergo radical prostatectomy for treatment is around 25%. Current clinical methods often fail at successfully predicting recurrence among patients at intermediate risk for recurrence. We used a label-free method, spatial light interference microscopy, to perform localized measurements of light scattering in prostatectomy tissue microarrays. We show, for the first time to our knowledge, that anisotropy of light scattering in the stroma immediately adjoining cancerous glands can be used to identify patients at higher risk for recurrence. The data show that lower value of anisotropy corresponds to a higher risk for recurrence, meaning that the stroma adjoining the glands of recurrent patients is more fractionated than in non-recurrent patients. Our method outperformed the widely accepted clinical tool CAPRA-S in the cases we interrogated irrespective of Gleason grade, prostate-specific antigen (PSA) levels and pathological tumor-node-metastasis (pTNM) stage. These results suggest that QPI shows promise in assisting pathologists to improve prediction of prostate cancer recurrence.

Occurrence of four Anaplasma species with veterinary and public health significance in sheep, northwestern China.

PubMed

Yang, Jifei; Han, Rong; Niu, Qingli; Liu, Zhijie; Guan, Guiquan; Liu, Guangyuan; Luo, Jianxun; Yin, Hong

2018-01-01

The members of the genus Anaplasma are important tick-borne rickettsial bacteria of veterinary and public health significance. Domestic ruminants are important reservoir hosts for several Anaplasma species. In this study, the occurrence of Anaplasma spp. was investigated by PCR in domestic small ruminants from Gansu, northwestern China. The results showed a high prevalence of Anaplasma spp. (46.2%, 201/435) in sheep. The average infection rates were 5.7%, 24.4%, 28.0% and 18.2% for A. ovis, A. bovis, A. phagocytophilum and A. capra, respectively. Coinfection of different Anaplasma species occurred in 96 (22.1%) sheep. The infections of Anaplasma species in sheep were confirmed by sequencing of msp4, 16S rRNA and gltA genes. Sequence analysis revealed a novel A. capra genotype in sheep that was distinct from the isolates identified from patients in northeastern China. This study gives the first insight of presence of four distinct Anaplasma species with veterinary and medical significance in sheep in northwestern China. Copyright © 2017. Published by Elsevier GmbH.

Endophthalmitis following pars plana vitrectomy for vitreous floaters

PubMed Central

Henry, Christopher R; Schwartz, Stephen G; Flynn, Harry W

2014-01-01

A case of Staphylococcus caprae endophthalmitis in a young patient following pars plana vitrectomy for symptomatic vitreous floaters is reported here. Recent literature suggests that there is an increasing trend of performing pars plana vitrectomy for symptomatic floaters. Although rare, the potential risk of endophthalmitis should be explicitly discussed with patients considering surgical intervention for vitreous floaters. PMID:25210434

Endophthalmitis following pars plana vitrectomy for vitreous floaters.

PubMed

Henry, Christopher R; Schwartz, Stephen G; Flynn, Harry W

2014-01-01

A case of Staphylococcus caprae endophthalmitis in a young patient following pars plana vitrectomy for symptomatic vitreous floaters is reported here. Recent literature suggests that there is an increasing trend of performing pars plana vitrectomy for symptomatic floaters. Although rare, the potential risk of endophthalmitis should be explicitly discussed with patients considering surgical intervention for vitreous floaters.

Recovery of goat·damaged vegetation in an insular tropical montane forest

Treesearch

Paul G. Scowcroft; Robert Hobdy

1987-01-01

The feral goat (Capra hircus) is an alien herbivore that has wreaked havoc in island ecosystems, including the dry, rugged, and relatively inaccessible montane koa parkland on the islands of Maui and Hawai'i. The objective of the present work was to evaluate the ability of koa parkland on Maui to recover naturally from browsing damage if...

21 CFR 528.1070 - Bc6 recombinant deoxyribonucleic acid construct.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 155-92 site in a specific hemizygous diploid line of dairy breeds of domestic goats (Capra aegagrus... of humans) in the mammary gland of goats derived from lineage progenitor 155-92. (b) Sponsor. See No. 042976 in § 510.600 of this chapter. (c) Limitations. Food or feed from GTC-155-92 goats is not permitted...

21 CFR 528.1070 - Bc6 recombinant deoxyribonucleic acid construct.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 155-92 site in a specific hemizygous diploid line of dairy breeds of domestic goats (Capra aegagrus... of humans) in the mammary gland of goats derived from lineage progenitor 155-92. (b) Sponsor. See No. 042976 in § 510.600 of this chapter. (c) Limitations. Food or feed from GTC-155-92 goats is not permitted...

Imagining the Postwar Small Town: Gender and the Politics of Landscape in "It's a Wonderful Life."

ERIC Educational Resources Information Center

Beuka, Robert

2000-01-01

Examines how Frank Capra's 1946 film, "It's a Wonderful Life," expresses a profound trepidation over the future of the small-town landscape (both physical and social) in the postwar era. Looks at the image of Bedford Falls and inventing the small town; at gender and landscape, and women's roles in the film; and at masculinity and the "new" small…

A Traumatic Reading of Twentieth-Century Rhetorical Theory: The Belgian Holocaust, Malines, Perelman, and de Man

ERIC Educational Resources Information Center

Frank, David A.

2007-01-01

In this essay, I seek to read the rhetorical theories set forth by Belgians Chaim Perelman and Paul de Man as responses to the Holocaust. To accomplish this aspiration, I draw from Dominick LaCapra's framework for the analysis of trauma and its expression in historical and theoretical texts. Reading the rhetorical theories of Perelman and de Man,…

Fighting With the Air: Airpower, Violence, and Public Sentiment in Irregular Warfare

DTIC Science & Technology

2016-12-01

AUTHOR(S) James L. Capra 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) Naval Postgraduate School Monterey, CA 93943-5000 8. PERFORMING ORGANIZATION ...Atlantic Treaty Organization NPS Naval Postgraduate School OEF Operation Enduring Freedom OSS Office of Strategic Services UN United Nations...correlations with political violence, as measured by individual violent events conducted by a political organization .17 However, other metrics, such as

An Innovation Framework Applied to a Military Cyber Professionals Association

DTIC Science & Technology

2013-09-01

of innovation generation described in the book , The Innovator’s Way, (IW) was selected as the framework for the skill sets required to establish the...fees nonexistent for service members. 38 Fritjof Capra, The Web of Life (New York: Anchor Books , 1996...distilled in the IW framework. The wisdom found in the pages of the IW book is a product of years of thoughtful contemplation of experiences and

A Dig into the Past Mitochondrial Diversity of Corsican Goats Reveals the Influence of Secular Herding Practices

PubMed Central

Hughes, Sandrine; Fernández, Helena; Cucchi, Thomas; Duffraisse, Marilyne; Casabianca, François; Istria, Daniel; Pompanon, François; Vigne, Jean-Denis; Hänni, Catherine; Taberlet, Pierre

2012-01-01

The goat (Capra hircus) is one of the earliest domesticated species ca. 10,500 years ago in the Middle-East where its wild ancestor, the bezoar (Capra aegagrus), still occurs. During the Neolithic dispersal, the domestic goat was then introduced in Europe, including the main Mediterranean islands. Islands are interesting models as they maintain traces of ancient colonization, historical exchanges or of peculiar systems of husbandry. Here, we compare the mitochondrial genetic diversity of both medieval and extant goats in the Island of Corsica that presents an original and ancient model of breeding with free-ranging animals. We amplified a fragment of the Control Region for 21 medieval and 28 current goats. Most of them belonged to the A haplogroup, the most worldwide spread and frequent today, but the C haplogroup is also detected at low frequency in the current population. Present Corsican goats appeared more similar to medieval goats than to other European goat populations. Moreover, 16 out of the 26 haplotypes observed were endemic to Corsica and the inferred demographic history suggests that the population has remained constant since the Middle Ages. Implications of these results on management and conservation of endangered Corsican goats currently decimated by a disease are addressed. PMID:22299033

A dig into the past mitochondrial diversity of Corsican goats reveals the influence of secular herding practices.

PubMed

Hughes, Sandrine; Fernández, Helena; Cucchi, Thomas; Duffraisse, Marilyne; Casabianca, François; Istria, Daniel; Pompanon, François; Vigne, Jean-Denis; Hänni, Catherine; Taberlet, Pierre

2012-01-01

The goat (Capra hircus) is one of the earliest domesticated species ca. 10,500 years ago in the Middle-East where its wild ancestor, the bezoar (Capra aegagrus), still occurs. During the Neolithic dispersal, the domestic goat was then introduced in Europe, including the main Mediterranean islands. Islands are interesting models as they maintain traces of ancient colonization, historical exchanges or of peculiar systems of husbandry. Here, we compare the mitochondrial genetic diversity of both medieval and extant goats in the Island of Corsica that presents an original and ancient model of breeding with free-ranging animals. We amplified a fragment of the Control Region for 21 medieval and 28 current goats. Most of them belonged to the A haplogroup, the most worldwide spread and frequent today, but the C haplogroup is also detected at low frequency in the current population. Present Corsican goats appeared more similar to medieval goats than to other European goat populations. Moreover, 16 out of the 26 haplotypes observed were endemic to Corsica and the inferred demographic history suggests that the population has remained constant since the Middle Ages. Implications of these results on management and conservation of endangered Corsican goats currently decimated by a disease are addressed.

Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces.

PubMed

Amills, M; Capote, J; Tosser-Klopp, G

2017-12-01

Domestic goats (Capra hircus) are spread across the five continents with a census of 1 billion individuals. The worldwide population of goats descends from a limited number of bezoars (Capra aegagrus) domesticated 10 000 YBP (years before the present) in the Fertile Crescent. The extraordinary adaptability and hardiness of goats favoured their rapid spread over the Old World, reaching the Iberian Peninsula and Southern Africa 7000 YBP and 2000 YBP respectively. Molecular studies have revealed one major mitochondrial haplogroup A and five less frequent haplogroups B, C, D, F and G. Moreover, the analysis of autosomal and Y-chromosome markers has evidenced an appreciable geographic differentiation. The implementation of new molecular technologies, such as whole-genome sequencing and genome-wide genotyping, allows for the exploration of caprine diversity at an unprecedented scale, thus providing new insights into the evolutionary history of goats. In spite of a number of pitfalls, the characterization of the functional elements of the goat genome is expected to play a key role in understanding the genetic determination of economically relevant traits. Genomic selection and genome editing also hold great potential, particularly for improving traits that cannot be modified easily by traditional selection. © 2017 Stichting International Foundation for Animal Genetics.

Archeological Investigations in Cochiti Reservoir, New Mexico. Volume 2. Excavation and Analysis 1975 Season.

DTIC Science & Technology

1977-01-01

groups who used this ratio should be considered. them to process wild seeds and other vegeta material. The trough metate has been considered a specialized...transition and as an indi- was composed entirely of jar formswith wide oriface. cation of the importance assumed by wild vegetal ma- not as difficult to...For example. Ovis/Capra meat is con- faunal resource utilization from the excavated site loca- sidered most edible when the animal is young. Meat

Phylogeography and systematics of the westernmost Italian Dolichopoda species (Orthoptera, Rhaphidophoridae)

PubMed Central

Allegrucci, Giuliana; Rampini, Mauro; Di Russo, Claudio; Lana, Enrico; Cocchi, Sara; Sbordoni, Valerio

2014-01-01

Abstract The genus Dolichopoda (Orthoptera; Rhaphidopohoridae) is present in Italy with 9 species distributed from northwestern Italy (Piedmont and Liguria) to the southernmost Apennines (Calabria), occurring also in the Tyrrhenian coastal areas and in Sardinia. Three morphologically very close taxa have been described in Piedmont and Liguria, i.e., D. ligustica ligustica, D. ligustica septentrionalis and D. azami azami. To investigate the delimitation of the northwestern species of Dolichopoda, we performed both morphological and molecular analyses. Morphological analysis was carried out by considering diagnostic characters generally used to distinguish different taxa, as the shape of epiphallus in males and the subgenital fig in females. Molecular analysis was performed by sequencing three mitochondrial genes, 12S rRNA, 16S rRNA, partially sequenced and the entire gene of COI. Results from both morphological and molecular analyses highlighted a very homogeneous group of populations, although genetically structured. Three haplogroups geographically distributed could be distinguished and based on these results we suggest a new taxonomic arrangement. All populations, due to the priority of description, should be assigned to D. azami azami Saulcy, 1893 and to preserve the names ligustica and septentrionalis, corresponding to different genetic haplogroups, we assign them to D. azami ligustica stat. n. Baccetti & Capra, 1959 and to D. azami septentrionalis stat. n. Baccetti & Capra, 1959. PMID:25197209

Chemiluminescence of Organic Compounds.

DTIC Science & Technology

1981-04-07

of organic reaction chemiluminescence (Rauiht, 197) ; Hastings and Wilson, 1976 ; Gundermann, 1974 ; White et al., 1974 ; McCapra, 1973 ; .oto, 1979...1977; Wilson, T., 1976; Turro et al., JI U4a; Mumtord, 1915), the chemiluminescence -4- of hydrazides (Roswell and White , 1978 ; White and Roswell...mechanical Iv exc, it cd . iii; q ie ed in a react inn, meaning energv is released in period ot t ime noi the *r?-!tcr of Ol I ess than thle t ime of a

Phylogenetic analysis of Sicilian goats reveals a new mtDNA lineage.

PubMed

Sardina, M T; Ballester, M; Marmi, J; Finocchiaro, R; van Kaam, J B C H M; Portolano, B; Folch, J M

2006-08-01

The mitochondrial hypervariable region 1 (HVR1) sequence of 67 goats belonging to the Girgentana, Maltese and Derivata di Siria breeds was partially sequenced in order to present the first phylogenetic characterization of Sicilian goat breeds. These sequences were compared with published sequences of Indian and Pakistani domestic goats and wild goats. Mitochondrial lineage A was observed in most of the Sicilian goats. However, three Girgentana haplotypes were highly divergent from the Capra hircus clade, indicating that a new mtDNA lineage in domestic goats was found.

Some resonances between Eastern thought and Integral Biomathics in the framework of the WLIMES formalism for modeling living systems.

PubMed

Simeonov, Plamen L; Ehresmann, Andrée C

2017-12-01

Forty-two years ago, Capra published "The Tao of Physics" (Capra, 1975). In this book (page 17) he writes: "The exploration of the atomic and subatomic world in the twentieth century has …. necessitated a radical revision of many of our basic concepts" and that, unlike 'classical' physics, the sub-atomic and quantum "modern physics" shows resonances with Eastern thoughts and "leads us to a view of the world which is very similar to the views held by mystics of all ages and traditions." This article stresses an analogous situation in biology with respect to a new theoretical approach for studying living systems, Integral Biomathics (IB), which also exhibits some resonances with Eastern thought. Stepping on earlier research in cybernetics 1 and theoretical biology, 2 IB has been developed since 2011 by over 100 scientists from a number of disciplines who have been exploring a substantial set of theoretical frameworks. From that effort, the need for a robust core model utilizing advanced mathematics and computation adequate for understanding the behavior of organisms as dynamic wholes was identified. At this end, the authors of this article have proposed WLIMES (Ehresmann and Simeonov, 2012), a formal theory for modeling living systems integrating both the Memory Evolutive Systems (Ehresmann and Vanbremeersch, 2007) and the Wandering Logic Intelligence (Simeonov, 2002b). Its principles will be recalled here with respect to their resonances to Eastern thought. Copyright © 2017 Elsevier Ltd. All rights reserved.

Blood parasites in reptiles imported to Germany.

PubMed

Halla, Ursula; Ursula, Halla; Korbel, Rüdiger; Rüdiger, Korbel; Mutschmann, Frank; Frank, Mutschmann; Rinder, Monika; Monika, Rinder

2014-12-01

Though international trade is increasing, the significance of imported reptiles as carriers of pathogens with relevance to animal and human health is largely unknown. Reptiles imported to Germany were therefore investigated for blood parasites using light microscopy, and the detected parasites were morphologically characterized. Four hundred ten reptiles belonging to 17 species originating from 11 Asian, South American and African countries were included. Parasites were detected in 117 (29%) of individual reptiles and in 12 species. Haemococcidea (Haemogregarina, Hepatozoon, Schellackia) were found in 84% of snakes (Python regius, Corallus caninus), 20% of lizards (Acanthocercus atricollis, Agama agama, Kinyongia fischeri, Gekko gecko) and 50% of turtles (Pelusios castaneus). Infections with Hematozoea (Plasmodium, Sauroplasma) were detected in 14% of lizards (Acanthocercus atricollis, Agama agama, Agama mwanzae, K. fischeri, Furcifer pardalis, Xenagama batillifera, Acanthosaura capra, Physignathus cocincinus), while those with Kinetoplastea (Trypanosoma) were found in 9% of snakes (Python regius, Corallus caninus) and 25 % of lizards (K. fischeri, Acanthosaura capra, G. gecko). Nematoda including filarial larvae parasitized in 10% of lizards (Agama agama, Agama mwanzae, K. fischeri, Fu. pardalis, Physignathus cocincinus). Light microscopy mostly allowed diagnosis of the parasites' genus, while species identification was not possible because of limited morphological characteristics available for parasitic developmental stages. The investigation revealed a high percentage of imported reptiles being carriers of parasites while possible vectors and pathogenicity are largely unknown so far. The spreading of haemoparasites thus represents an incalculable risk for pet reptiles, native herpetofauna and even human beings.

Tuberculosis in Antelopes in a Zoo in Poland--Problem of Public Health.

PubMed

Krajewska, Monika; Załuski, Michał; Zabost, Anna; Orłowska, Blanka; Augustynowicz-Kopeć, Ewa; Anusz, Krzysztof; Lipiec, Marek; Weiner, Marcin; Szulowski, Krzysztof

2015-01-01

Bovine tuberculosis is an infectious disease that occurs in many species of both domestic and wild animals, as well as those held in captivity. The etiological factor is the acid resistant bacillus (Mycobacterium bovis or Mycobacterium caprae), which is characterized by the major pathogenicity among mycobacteria belonging to the Mycobacterium tuberculosis complex. The material from 8 antelopes from the zoo, suspected for tuberculosis were examined, and M. bovis strains were isolated from 6 of them. The spoligotyping method showing spoligo pattern 676763777777600. In Poland, this spoligotype has not been observed so far.

Intrinsically restless: Unifying science, writing, and the human condition

NASA Astrophysics Data System (ADS)

Sissom, Matthew

The field of physics has always fascinated me, but I never possessed the mathematical skills necessary to extend that interest past the point of curiosity. This thesis was set up to explore how I and other writers, specifically Walt Whitman, use(d) the skills we do have to ask and attempt to answer the same cosmic questions normally reserved for scientists overseeing particle collider experiments. In Tao of Physics, Fritjof Capra attempted to blend the principles of Eastern philosophy with the movements associated with modern physics. In doing so, he offers up a few insights into the human desire to "divide the world into separate objects and events" (117), which I believe, when it comes to fiction, greatly influences the audience's interpretive framework. Capra suggests, "To believe that our abstract concepts of separate `things' and `vents' are realities of nature is an illusion" (117). Humans use this division to cope with our everyday environment, yet it is not a fundamental feature of reality but, rather, an abstraction devised by our discriminating and categorizing intellect. It is a coping mechanism, as Capra refers to it, that pins writers in a corner, encouraging them to forms and styles set by their predecessors to better satisfy the "discriminating and categorizing intellect" of their audience. Writers often struggle to achieve a balance between accurately presenting the human condition that, like Capra's description of subatomic particles as "intrinsically restless" (117), changes based on myriad variables and properly structuring their writing to fit a predetermined model. Whitman, a fan of popular science, drew from the scientific world, using his understanding of the interpretive framework, to better craft his poems' metaphors. In "Song of Myself," Whitman suggests that the celebration of one's own existence cannot be separated from the celebration of the universe, "For every atom belonging to me as good belongs to you" (1-3). Whitman's writing

Assessment of BCG and inactivated Mycobacterium bovis vaccines in an experimental tuberculosis infection model in sheep.

PubMed

Balseiro, Ana; Altuzarra, Raúl; Vidal, Enric; Moll, Xavier; Espada, Yvonne; Sevilla, Iker A; Domingo, Mariano; Garrido, Joseba M; Juste, Ramón A; Prieto, Miguel; Pérez de Val, Bernat

2017-01-01

Animal tuberculosis (TB) is a complex animal health problem that causes disruption to trade and significant economic losses. TB involves a multi-host system where sheep, traditionally considered a rare host of this infection, have been recently included. The aims of this study were to develop an experimental TB infection model in sheep with a Mycobacterium caprae field strain isolated from a tuberculous diseased ewe, and to use this to evaluate the safety and efficacy of two vaccines against TB in sheep, the live-attenuated M. bovis BCG vaccine (Danish strain) and a heat-inactivated M. bovis (HIMB) vaccine. Eighteen 2 month-old lambs were experimentally challenged with M. caprae by the endotracheal route (1.5 × 103 CFU). They were separated per treatment group into parenterally vaccinated with a live BCG Danish strain vaccine (n = 6), orally vaccinated with a suspension of HIMB (n = 6) and unvaccinated controls (n = 6). Clinical, immunological, pathological and bacteriological parameters of infection were measured. All lambs were successfully infected and developed gross TB lesions in the respiratory system. The BCG vaccine conferred considerable protection against experimental TB in lambs, as measured by a reduction of the gross lesion volumes and bacterial load. However, HIMB vaccinated animals did not show protection. This study proposes a reliable new experimental model for a better understanding of tuberculosis in sheep. BCG vaccination offers an effective prospect for controlling the disease. Moreover alternative doses and/or routes of administration should be considered to evaluate the efficacy of the HIMB vaccine candidate.

Comparison of cell cycle progression score with two immunohistochemical markers (PTEN and Ki-67) for predicting outcome in prostate cancer after radical prostatectomy.

PubMed

Léon, Priscilla; Cancel-Tassin, Geraldine; Drouin, Sara; Audouin, Marie; Varinot, Justine; Comperat, Eva; Cathelineau, Xavier; Rozet, François; Vaessens, Christophe; Stone, Steven; Reid, Julia; Sangale, Zaina; Korman, Patrick; Rouprêt, Morgan; Fromond-Hankard, Gaelle; Cussenot, Olivier

2018-04-20

Previous studies of the cell cycle progression (CCP) score in surgical specimens of prostate cancer (PCa) in patients treated by radical prostatectomy (RP) demonstrated significant association with time to biochemical recurrence (BCR). In this study, we compared the ability of the CCP score and the expression of PTEN or Ki-67 to predict BCR in a cohort of patients treated by RP. Finally, we constructed the best predictive model for BCR, incorporating biomarkers and relevant clinical variables. The study population consisted of 652 PCa patients enrolled in a retrospective cohort and who had RP surgery in French urological centers from 2000 to 2007. Among the 652 patients with CCP scores and complete clinical data, BCR events occurred in 41%, and the median time from surgery to the last follow-up among BCR-free patients was 72 months. In univariate Cox analysis, the continuous CCP score and positive Ki-67 predicted recurrence with a HR of 1.44 (95% CI 1.17-1.75; p = 5.3 × 10 -4 ) and 1.89 (95% CI 1.38-2.57; p = 1.6 × 10 -4 ), respectively. In contrast, PTEN expression was not associated with BCR risk. Of the three biomarkers, only the CCP score remained significantly associated in a multivariable Cox model (p = 0.026). The best model incorporated CAPRA-S and CCP scores as predictors, with HRs of 1.32 and 1.24, respectively. The CCP score was superior to the two IHC markers (PTEN and Ki-67) for predicting outcome in PCa after RP.

Temporal Trends in Clinical and Pathological Characteristics for Men Undergoing Radical Prostatectomy Between 1995 and 2013 at Rigshospitalet, Copenhagen, Denmark, and Stanford University Hospital, United States.

PubMed

Loft, Mathias Dyrberg; Berg, Kasper Drimer; Kjaer, Andreas; Iversen, Peter; Ferrari, Michelle; Zhang, Chiyuan A; Brasso, Klaus; Brooks, James D; Røder, Martin Andreas

2017-09-06

To analyze how prostate-specific antigen (PSA) screening and practice patterns has affected trends in tumor characteristics in men undergoing radical prostatectomy (RP) in the United States and Denmark. Unlike in the United States, PSA screening has not been recommended in Denmark. We performed an observational register study using pre- and postoperative data on 2168 Danish patients from Rigshospitalet, Copenhagen, Denmark, and 2236 patients from Stanford University Hospital, Stanford, CA, who underwent RP between 1995 and 2013. Patients were stratified according to Cancer of the Prostate Risk Assessment-Postsurgical (CAPRA-S) risk groups and D'Amico risk classification and were clustered into 4 time periods (1995-1999, 2000-2004, 2005-2009, and 2010-2013). Temporal trends in the proportions of patients of a given variable at the 2 institutions were evaluated with Cochran-Armitage test for trends and chi-square testing. A total of 4404 patients were included. Temporal changes in preoperative PSA, age, grade, and stage was found in both cohorts. Median preoperative PSA declined in both cohorts, while median age increased, with the Danish cohort showing the greatest changes in both PSA and age. In both cohorts, there was a trend for higher-risk preoperative features before RP over time. In 2010-2013, 27.7% and 21.8% of the patients were in the D'Amico high-risk group at Copenhagen and Stanford, respectively. Despite recommendation against PSA screening in Denmark, Danish men undergoing RP at Rigshospitalet to a considerable extent now resemble American men undergoing RP at Stanford. At both sites, there is continued trend to reduce the number of men undergoing RP for low-risk prostate cancer. Copyright © 2017 Elsevier Inc. All rights reserved.

Short communication: Identification of coagulase-negative staphylococcus species from goat milk with the API Staph identification test and with transfer RNA-intergenic spacer PCR combined with capillary electrophoresis.

PubMed

Koop, G; De Visscher, A; Collar, C A; Bacon, D A C; Maga, E A; Murray, J D; Supré, K; De Vliegher, S; Haesebrouck, F; Rowe, J D; Nielen, M; van Werven, T

2012-12-01

Coagulase-negative staphylococci (CNS) are the most commonly isolated bacteria from goat milk, but they have often been identified with phenotypic methods, which may have resulted in misclassification. The aims of this paper were to assess the amount of misclassification of a phenotypic test for identifying CNS species from goat milk compared with transfer RNA intergenic spacer PCR (tDNA-PCR) followed by capillary electrophoresis, and to apply the tDNA-PCR technique on different capillary electrophoresis equipment. Milk samples were collected from 416 does in 5 Californian dairy goat herds on 3 occasions during lactation. In total, 219 CNS isolates were identified at the species level with tDNA-PCR and subjected to the API 20 Staph identification test kit (API Staph; bioMérieux, Durham, NC). If the same species was isolated multiple times from the same udder gland, only the first isolate was used for further analyses, resulting in 115 unique CNS isolates. According to the tDNA-PCR test, the most prevalent CNS species were Staphylococcus epidermidis, Staphylococcus caprae, and Staphylococcus simulans. Typeability with API staph was low (72%). Although the API Staph test was capable of identifying the majority of Staph. epidermidis and Staph. caprae isolates, sensitivity for identification of Staph. simulans was low. The true positive fraction was high for the 3 most prevalent species. It was concluded that the overall performance of API Staph in differentiating CNS species from goat milk was moderate to low, mainly because of the low typeability, and that genotypic methods such as tDNA-PCR are preferred. Copyright © 2012 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Cellular distribution, purification and electrophoretic properties of malate dehydrogenase in Trichuris ovis and inhibition by benzimidazoles and pyrimidine derivatives.

PubMed

Sanchez-Moreno, M; Ortega, J E; Valero, A

1989-12-01

High levels of malate dehydrogenase were found in Trichuris ovis. Two molecular forms of the enzyme, of different cellular location and electrophoretic pattern, were isolated and purified. The activity of soluble malate dehydrogenase was greater than that of mitochondrial malate dehydrogenase. Both forms also displayed different electrophoretic profiles in comparison with purified extracts from goat (Capra hircus) liver. Substrate concentration directly affected enzyme activity. Host and parasite malate dehydrogenase activity were both inhibited by a series of benzimidazoles and pyrimidine-derived compounds, some of which markedly reduced parasite enzyme activity, but not host enzyme activity. Percentage inhibition by some pyrimidine derivatives was greater than that produced by benzimidazoles.

Generation of induced Pluripotent Stem Cells from Domestic Goats - Capra hircus

USDA-ARS?s Scientific Manuscript database

The creation of genetically modified (GM) goats provides a powerful method for improving animal health, enhancing production traits, animal pharming, and ensuring food safety, all of which are high priority goals for animal agriculture. However, GM goats and the GM livestock field in general have l...

Mitigation of ergot vasoconstriction by clover isoflavones in goats (Capra hircus)

USDA-ARS?s Scientific Manuscript database

Ergot alkaloids produced by a fungal endophyte (Epichloë coenophiala; formerly Neotyphodium coenphialum) that infects tall fescue (Lolium arundinaceum) can induce persistent constriction of the vasculature in ruminants, hindering their capability to thermo-regulate core body temperature. There is e...

A risk-adjusted definition of biochemical recurrence after radical prostatectomy.

PubMed

Morgan, T M; Meng, M V; Cooperberg, M R; Cowan, J E; Weinberg, V; Carroll, P R; Lin, D W

2014-06-01

To determine whether a variable definition of biochemical recurrence (BCR) based on clincopathologic features facilitates early identification of patients likely to suffer from disease progression. The definition of BCR after radical prostatectomy (RP) bears important implications for patient counseling and management; however, there remains a significant debate regarding the appropriate definition. The study cohort consisted of 3619 men who underwent RP for localized prostate cancer from 1989 to 2007, with data abstracted from the Cancer of the Prostate Strategic Urologic Research Endeavor (CaPSURE) registry. Patients were stratified into three risk groups according to Cancer of the Prostate Risk Assessment post-Surgical (CAPRA-S) score. Three single threshold PSA cut-points for BCR were evaluated (PSA > or =0.05, > or =0.2 and > or =0.4 ng ml(-1)) as well as a variable cut-point defined by risk group. After reaching the cut-points, patients were followed for further PSA progression. The proportion of patients with BCR differed by cut-point and risk group, ranging from 7 to 37% (low risk), 22 to 58% (intermediate risk) and 60 to 86% (high risk). The positive-predictive value (PPV) for predicting further PSA progression was 49% for the PSA > or =0.05 ng ml(-1), 62% for the PSA > or =0.2 ng ml(-1), 65% for the PSA > or =0.4 ng ml(-1) and 68% for the risk-adjusted definition. Five-year progression-free survival was 39% for the risk-adjusted definition compared with 45-52% for the other definitions of BCR. These data suggest that a variable definition of BCR determined by clinicopathologic risk may improve the identification of early recurrence after RP without increasing the overdiagnosis of BCR. By using a risk-adjusted BCR definition, clinicians can better predict future PSA progression and more appropriately counsel patients regarding salvage therapies.

Meat species identification and Halal authentication analysis using mitochondrial DNA.

PubMed

Murugaiah, Chandrika; Noor, Zainon Mohd; Mastakim, Maimunah; Bilung, Lesley Maurice; Selamat, Jinap; Radu, Son

2009-09-01

A method utilizing PCR-restriction fragment length polymorphism (RFLP) in the mitochondrial genes was developed for beef (Bos taurus), pork (Sus scrofa), buffalo (Bubalus bubali), quail (Coturnix coturnix), chicken (Gallus gallus), goat (Capra hircus), rabbit (Oryctolagus cuniculus) species identification and Halal authentication. PCR products of 359-bp were successfully obtained from the cyt b gene of these six meats. AluI, BsaJI, RsaI, MseI, and BstUI enzymes were identified as potential restriction endonucleases to differentiate the meats. The genetic differences within the cyt b gene among the meat were successfully confirmed by PCR-RFLP. A reliable typing scheme of species which revealed the genetic differences among the species was developed.

Expression profile of HSP genes during different seasons in goats (Capra hircus).

PubMed

Dangi, Satyaveer Singh; Gupta, Mahesh; Maurya, Divakar; Yadav, Vijay Prakash; Panda, Rudra Prasanna; Singh, Gyanendra; Mohan, Nitai Haridas; Bhure, Sanjeev Kumar; Das, Bikash Chandra; Bag, Sadhan; Mahapatra, Ramkrishna; Taru Sharma, Guttalu; Sarkar, Mihir

2012-12-01

The present study has demonstrated the expression of HSP60, HSP70, HSP90, and UBQ in peripheral blood mononuclear cells (PBMCs) during different seasons in three different age groups (Groups I, II, and III with age of 0-2, 2-5, and >5 years, respectively) of goats of tropical and temperate regions. Real-time polymerase chain reaction was applied to investigate mRNA expression of examined factors. Specificity of the desired products was documented using analysis of the melting temperature and high-resolution gel electrophoresis to verify that the transcripts are of the exact molecular size predicted. The mRNA expression of HSP60, HSP90, and UBQ was significantly higher (P < 0.05) in all age groups during peak summer season as compared with peak winter season in both tropical and temperate region goats. HSP70 mRNA expression was significantly higher (P < 0.05) during summer season as compared with winter season in tropical region goats. However, in the temperate region, in goats from all the three age groups studied, a non-significant difference of HSP70 expression between summer and winter seasons was noticed. In conclusion, results demonstrate that (1) HSP genes are expressed in caprine PBMCs and (2) higher expression of HSPs during thermal stress suggest possible involvement of them to ameliorate deleterious effect of thermal stress so as to maintain cellular integrity and homeostasis in goats.

A Biopsy-based 17-gene Genomic Prostate Score as a Predictor of Metastases and Prostate Cancer Death in Surgically Treated Men with Clinically Localized Disease.

PubMed

Van Den Eeden, Stephen K; Lu, Ruixiao; Zhang, Nan; Quesenberry, Charles P; Shan, Jun; Han, Jeong S; Tsiatis, Athanasios C; Leimpeter, Amethyst D; Lawrence, H Jeffrey; Febbo, Phillip G; Presti, Joseph C

2018-01-01

A 17-gene biopsy-based reverse transcription polymerase chain reaction assay, which provides a Genomic Prostate Score (GPS-scale 0-100), has been validated as an independent predictor of adverse pathology and biochemical recurrence after radical prostatectomy (RP) in men with low- and intermediate-risk prostate cancer (PCa). To evaluate GPS as a predictor of PCa metastasis and PCa-specific death (PCD) in a large cohort of men with localized PCa and long-term follow-up. A retrospective study using a stratified cohort sampling design was performed in a cohort of men treated with RP within Kaiser Permanente Northern California. RNA from archival diagnostic biopsies was assayed to generate GPS results. We assessed the association between GPS and time to metastasis and PCD in prespecified uni- and multivariable statistical analyses, based on Cox proportional hazard models accounting for sampling weights. The final study population consisted of 279 men with low-, intermediate-, and high-risk PCa between 1995 and 2010 (median follow-up 9.8 yr), and included 64 PCD and 79 metastases. Valid GPS results were obtained for 259 (93%). In univariable analysis, GPS was strongly associated with time to PCD, hazard ratio (HR)/20 GPS units=3.23 (95% confidence interval [CI] 1.84-5.65; p<0.001), and time to metastasis, HR/20 units=2.75 (95% CI 1.63-4.63; p<0.001). The association between GPS and both end points remained significant after adjusting for National Comprehensive Cancer Network, American Urological Association, and Cancer of the Prostate Risk Assessment (CAPRA) risks (p<0.001). No patient with low- or intermediate-risk disease and a GPS of<20 developed metastases or PCD (n=31). In receiver operating characteristic analysis of PCD at 10 yr, GPS improved the c-statistic from 0.78 (CAPRA alone) to 0.84 (GPS+CAPRA; p<0.001). A limitation of the study was that patients were treated during an era when definitive treatment was standard of care with little adoption of active

Survey on the importance of mange in the aetiology of skin lesions in goats in Peninsular Malaysia.

PubMed

Dorny, P; Van Wyngaarden, T; Vercruysse, J; Symoens, C; Jalia, A

1994-05-01

A survey on mange mite infestations in the aetiology of skin lesions in goats in Peninsular Malaysia is described. Skin lesions were observed in 25 (93%) of the 27 goat farms investigated. Mange mites were found in 22 (88%) of these goat herds. Chorioptes texanus was found in 20.7%, Psoroptes cuniculi in 19.3%, Sarcoptes scabiei in 18.6% and Demodex canis var. caprae in 0.4% of the samples, taken from the skin lesions. Thirteen cases of generalised manage were diagnosed, from which 9 were caused by S. scabiei, 2 by P. cuniculi and one by C. texanus. All other cases had more or less localised lesions. No significant differences could be found in incidence and distribution of skin lesions between age classes.

Molecular Identification of Food Sources in Triatomines in the Brazilian Northeast: Roles of Goats and Rodents in Chagas Disease Epidemiology

PubMed Central

Valença-Barbosa, Carolina; Fernandes, Fabiano Araújo; Santos, Helena Lucia Carneiro; Sarquis, Otília; Harry, Myriam; Almeida, Carlos Eduardo; Lima, Marli Maria

2015-01-01

We used the gut contents of triatomines collected from rural areas of Ceará State, northeastern Brazil, to identify their putative hosts via vertebrate cytb gene sequencing. Successful direct sequencing was obtained for 48% of insects, comprising 50 Triatoma brasiliensis, 7 Triatoma pseudomaculata, and 1 Rhodnius nasutus. Basic local alignment search tool (BLAST) procedure revealed that domestic animals, such as chickens (Gallus gallus) and goats (Capra hircus), are the main food source, including in sylvatic environment. Native hosts were also detected in peridomestic environment such as reptiles (Tropidurus sp. and Iguana iguana) and the Galea spixii (Rodentia: Caviidae). The role of goats and Galea spixii in Chagas disease epidemiology calls for further studies, because these mammals likely link the sylvatic and domestic Trypanosoma cruzi cycles. PMID:26350453

Surveillance of Bovine Tuberculosis and Risk Estimation of a Future Reservoir Formation in Wildlife in Switzerland and Liechtenstein

PubMed Central

Schöning, Janne Marie; Cerny, Nadine; Prohaska, Sarah; Wittenbrink, Max M.; Smith, Noel H.; Bloemberg, Guido; Pewsner, Mirjam; Schiller, Irene; Origgi, Francesco C.; Ryser-Degiorgis, Marie-Pierre

2013-01-01

Bovine tuberculosis (bTB) caused by Mycobacterium bovis or M. caprae has recently (re-) emerged in livestock and wildlife in all countries bordering Switzerland (CH) and the Principality of Liechtenstein (FL). Comprehensive data for Swiss and Liechtenstein wildlife are not available so far, although two native species, wild boar (Sus scrofa) and red deer (Cervus elaphus elaphus), act as bTB reservoirs elsewhere in continental Europe. Our aims were (1) to assess the occurrence of bTB in these wild ungulates in CH/FL and to reinforce scanning surveillance in all wild mammals; (2) to evaluate the risk of a future bTB reservoir formation in wild boar and red deer in CH/FL. Tissue samples collected from 2009 to 2011 from 434 hunted red deer and wild boar and from eight diseased ungulates with tuberculosis-like lesions were tested by direct real-time PCR and culture to detect mycobacteria of the Mycobacterium tuberculosis complex (MTBC). Identification of suspicious colonies was attempted by real-time PCR, genotyping and spoligotyping. Information on risk factors for bTB maintenance within wildlife populations was retrieved from the literature and the situation regarding identified factors was assessed for our study areas. Mycobacteria of the MTBC were detected in six out of 165 wild boar (3.6%; 95% CI: 1.4–7.8) but none of the 269 red deer (0%; 0–1.4). M. microti was identified in two MTBC-positive wild boar, while species identification remained unsuccessful in four cases. Main risk factors for bTB maintenance worldwide, including different causes of aggregation often resulting from intensive wildlife management, are largely absent in CH and FL. In conclusion, M. bovis and M. caprae were not detected but we report for the first time MTBC mycobacteria in Swiss wild boar. Present conditions seem unfavorable for a reservoir emergence, nevertheless increasing population numbers of wild ungulates and offal consumption may represent a risk. PMID:23349839

Molecular Subgroup of Primary Prostate Cancer Presenting with Metastatic Biology.

PubMed

Walker, Steven M; Knight, Laura A; McCavigan, Andrena M; Logan, Gemma E; Berge, Viktor; Sherif, Amir; Pandha, Hardev; Warren, Anne Y; Davidson, Catherine; Uprichard, Adam; Blayney, Jaine K; Price, Bethanie; Jellema, Gera L; Steele, Christopher J; Svindland, Aud; McDade, Simon S; Eden, Christopher G; Foster, Chris; Mills, Ian G; Neal, David E; Mason, Malcolm D; Kay, Elaine W; Waugh, David J; Harkin, D Paul; Watson, R William; Clarke, Noel W; Kennedy, Richard D

2017-10-01

Approximately 4-25% of patients with early prostate cancer develop disease recurrence following radical prostatectomy. To identify a molecular subgroup of prostate cancers with metastatic potential at presentation resulting in a high risk of recurrence following radical prostatectomy. Unsupervised hierarchical clustering was performed using gene expression data from 70 primary resections, 31 metastatic lymph nodes, and 25 normal prostate samples. Independent assay validation was performed using 322 radical prostatectomy samples from four sites with a mean follow-up of 50.3 months. Molecular subgroups were identified using unsupervised hierarchical clustering. A partial least squares approach was used to generate a gene expression assay. Relationships with outcome (time to biochemical and metastatic recurrence) were analysed using multivariable Cox regression and log-rank analysis. A molecular subgroup of primary prostate cancer with biology similar to metastatic disease was identified. A 70-transcript signature (metastatic assay) was developed and independently validated in the radical prostatectomy samples. Metastatic assay positive patients had increased risk of biochemical recurrence (multivariable hazard ratio [HR] 1.62 [1.13-2.33]; p=0.0092) and metastatic recurrence (multivariable HR=3.20 [1.76-5.80]; p=0.0001). A combined model with Cancer of the Prostate Risk Assessment post surgical (CAPRA-S) identified patients at an increased risk of biochemical and metastatic recurrence superior to either model alone (HR=2.67 [1.90-3.75]; p<0.0001 and HR=7.53 [4.13-13.73]; p<0.0001, respectively). The retrospective nature of the study is acknowledged as a potential limitation. The metastatic assay may identify a molecular subgroup of primary prostate cancers with metastatic potential. The metastatic assay may improve the ability to detect patients at risk of metastatic recurrence following radical prostatectomy. The impact of adjuvant therapies should be assessed in

A framework to evaluate the cost-effectiveness of the NADiA ProsVue slope to guide adjuvant radiotherapy among men with high-risk characteristics following prostatectomy for prostate cancer.

PubMed

Reed, Shelby D; Stewart, Suzanne Biehn; Scales, Charles D; Moul, Judd W

2014-07-01

The NADiA ProsVue is a prognostic system that measures prostate-specific antigen slope to identify men at lower risk of clinical recurrence of prostate cancer after radical prostatectomy. We developed a decision-modeling framework to evaluate its cost-effectiveness to guide the use of adjuvant radiotherapy (ART). We populated the model using patient-level data and external sources. Patients were classified as intermediate risk or high risk on the basis of Cancer of the Prostate Risk Assessment-Postsurgical (CAPRA-S) nomogram and then stratified by the ProsVue slope (≤2 pg/mL/mo; >2 pg/mL/mo) and receipt of ART. In sensitivity analyses, we varied the effect of the ProsVue slope on the use of ART and other model parameters. The cost-effectiveness of the ProsVue-guided strategy varied widely because of small differences in quality-adjusted life-years (QALYs) at 10 years. In the intermediate-risk group, when the use of ART decreased from 20% (standard care) to 7.5% among patients with a ProsVue slope value of 2 pg/mL/mo or less, the incremental cost-effectiveness ratio was $25,160/QALY. In the high-risk group, the use of ART would have to decrease from 40% (standard care) to 11.5% among those with a ProsVue slope value of 2 pg/mL/mo or less to obtain a ratio of $50,000/QALY. The cost-effectiveness ratios were sensitive to varying benefits of salvage therapy, quality of life, and costs of ART and ProsVue testing. The effect of the ProsVue system on costs will be dependent on the extent to which ART decreases among men identified as having a low risk of recurrence. Its effect on QALYs will remain conditional on uncertain clinical and quality-of-life benefits associated with ART. Copyright © 2014 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

Risk Assessment Among Prostate Cancer Patients Receiving Primary Androgen Deprivation Therapy

PubMed Central

Cooperberg, Matthew R.; Hinotsu, Shiro; Namiki, Mikio; Ito, Kazuto; Broering, Jeanette; Carroll, Peter R.; Akaza, Hideyuki

2009-01-01

Purpose Prostate cancer epidemiology has been marked overall by a downward risk migration over time. However, in some populations, both in the United States and abroad, many men are still diagnosed with high-risk and/or advanced disease. Primary androgen deprivation therapy (PADT) is frequently offered to these patients, and disease risk prediction is not well-established in this context. We compared risk features between large disease registries from the United States and Japan, and aimed to build and validate a risk prediction model applicable to PADT patients. Methods Data were analyzed from 13,740 men in the United States community-based Cancer of the Prostate Strategic Urologic Research Endeavor (CaPSURE) registry and 19,265 men in the Japan Study Group of Prostate Cancer (J-CaP) database, a national Japanese registry of men receiving androgen deprivation therapy. Risk distribution was compared between the two datasets using three well-described multivariable instruments. A novel instrument (Japan Cancer of the Prostate Risk Assessment [J-CAPRA]) was designed and validated to be specifically applicable to PADT patients, and more relevant to high-risk patients than existing instruments. Results J-CaP patients are more likely than CaPSURE patients to be diagnosed with high-risk features; 43% of J-CaP versus 5% of CaPSURE patients had locally advanced or metastatic disease that could not be stratified with the standard risk assessment tools. J-CAPRA—scored 0 to 12 based on Gleason score, prostate-specific antigen level, and clinical stage—predicts progression-free survival among PADT patients in J-CaP with a c-index of 0.71, and cancer-specific survival among PADT patients in CaPSURE with a c-index of 0.84. Conclusion The novel J-CAPRA is the first risk instrument developed and validated for patients undergoing PADT. It is applicable to those with both localized and advanced disease, and performs well in diverse populations. PMID:19667269

Cost-effectiveness of modified-release prednisone in the treatment of moderate to severe rheumatoid arthritis with morning stiffness based on directly elicited public preference values.

PubMed

Dunlop, William; Iqbal, Itrat; Khan, Ifty; Ouwens, Mario; Heron, Louise

2013-01-01

Assessing the cost-effectiveness of treatments in rheumatoid arthritis (RA) is of growing importance due to the chronic nature of the disease, rising treatment costs, and budget-constrained health care systems. This analysis assesses the cost-effectiveness of modified-release (MR) prednisone compared with immediate-release (IR) prednisone for the treatment of morning stiffness due to RA. A health state transition model was used to categorize RA patients into four health states, defined by duration of morning stiffness. The model applied a 1-year time horizon and adopted a UK National Health Service (NHS) perspective. Health benefits were measured in quality-adjusted life years (QALYs) and the final output was the incremental cost-effectiveness ratio (ICER). Efficacy data were derived from the CAPRA-1 (Circadian Administration of Prednisone in Rheumatoid Arthritis) study, drug costs from the British National Formulary (BNF), and utility data from a direct elicitation time-trade-off (TTO) study in the general population. Sensitivity analyses were conducted. Mean treatment costs per patient were higher for MR-prednisone (£649.70) than for IR-prednisone (£46.54) for the duration of the model. However, the model generated an incremental QALY of 0.044 in favor of MR-prednisone which resulted in an ICER of £13,577. Deterministic sensitivity analyses did not lead to significant changes in the ICER. Probabilistic sensitivity analysis reported that MR-prednisone had an 84% probability of being cost-effective at a willingness-to-pay threshold of £30,000 per QALY. The model only considers drug costs and there was a lack of comparative long-term data for IR-prednisone. Furthermore, utility benefits were not captured in the clinical setting. This analysis demonstrates that, based on the CAPRA-1 trial and directly elicited public preference values, MR-prednisone is a cost-effective treatment option when compared with IR-prednisone for RA patients with morning stiffness over

Determination of first pregnancy and foetal measurements in Egyptian Baladi goats (Capra hircus).

PubMed

Amer, Hussein A

2008-01-01

This study was conducted using B-mode transrectal (TR) and transabdominal (TA) ultrasonography to determine early pregnancy and fetometry. A total of 110 does aged between 8 and 36 months were used. The detection of early pregnancy and foetal number was measured. The relationship between gestation age and crown-rump length (CRL) and bi-parietal diameter (BPD) was determined from days 40 to 109 of gestation. The accuracy of foetal sexing was determined by differentiation of genital tubercle (GT) from days 40 to 109 of gestation and then followed up after birth. The examination revealed 95.5% of does were pregnant, with 100% accuracy in detecting pregnancy for positive cases. The foetal number was 45.7% and 54.3% for single and twins/triplets. The TR probe enabled more reliable and early recognition of foetal fluid (5 days) and heart beats (4 days) than the TA probe. The TR observation of heart beats is recommended as conclusive evidence of the presence of a live foetus. The TA convex probe was used from days 40-89 to measure CRL and from days 40-109 to measure BPD. The relation between gestational age and CRL or BPD were highly significant (p<0.0001). The accuracy of sex identification among the three groups was not significantly (p>0.05) higher in single, compared to multiple pregnancies. In total, 83.3% and 70.2% of single and twins and triplets were sexed. After birth, one case was misdiagnosed by ultrasound, i.e. 83.3% (single) and 68.4% (twins and triplets) were sexed. However, identification of GT in male foetuses was possible from day 40 onwards. From a total 105 scanned does, 80 (76.2%) were sexed and 75.2% of cases were sexed after birth. B-mode real-time ultrasonography is recommended as a reliable means that can be used in field conditions to provide early detection of gestation as early as 19-27 days after mating, for CRL or BPD measuring and foetal sexing from day 40 of gestation onwards.

Characterization of microRNAs from goat (Capra hircus) by Solexa deep-sequencing technology.

PubMed

Ling, Y H; Ding, J P; Zhang, X D; Wang, L J; Zhang, Y H; Li, Y S; Zhang, Z J; Zhang, X R

2013-06-13

MicroRNAs (miRNAs) are an important class of small noncoding RNAs that are highly conserved in plants and animals. Many miRNAs are known to mediate a myriad of cell processes, including proliferation and differentiation, via the regulation of some transcription and signaling factors, which are closely related to muscle development and disease. In this study, small RNA cDNA libraries of Boer goats were constructed. In addition, we obtained the goat muscle miRNAs by using Solexa deep-sequencing technology and analyzed these miRNA characteristics by combining it with the bioinformatics technology. Based on Solexa sequencing and bioinformatics analysis, 562 species-conserved and 5 goat genome-specific miRNAs were identified, 322 of which exceeded 100 in the expression levels. The results of real-time quantitative polymerase chain reaction from 8 randomly selected miRNAs showed that the 8 miRNAs were expressed in goat muscle, and the expression patterns were consistent with the Solexa sequencing results. The identification and characterization of miRNAs in goat muscle provide important information on the role of miRNA regulation in muscle growth and development. These data will help to facilitate studies on the regulatory roles played by miRNAs during goat growth and development.

Cryoprotective role of organic Zn and Cu supplementation in goats (Capra hircus) diet.

PubMed

Arangasamy, Arunachalam; Krishnaiah, Mayasula Venkata; Manohar, Narasimhaiah; Selvaraju, Sellappan; Rani, Guvvala Pushpa; Soren, Nira Manik; Reddy, Ippala Janardhan; Ravindra, Janivara Parameshwaraiah

2018-04-01

The current study focused on cryopreservation and assessment of characters of post-thaw semen of indigenous Osmanabadi bucks maintained with standard diet, supplemented with different concentrations of organic zinc (Zn), copper (Cu) or in combination, for a period of 180 days. The different doses of organic Zn and Cu were fed per kg DM basis, Zn groups (low: Zn20, medium: Zn40 and high: Zn60), Cu groups: (low: Cu12.5, medium: Cu25 and high: Cu37.5) and combination of Zn + Cu groups (low: Zn20 + Cu12.5, medium: Zn40 + Cu25 and high: Zn60 + Cu37.5) respectively. The control group bucks were maintained mainly on the basal diet without any additional mineral supplementation. Two hundred and forty (240) semen samples were collected from 40 bucks aged 11 months, through electro ejaculator method, processed and analysed for sperm quality parameters both at pre freeze and post-thaw stage. The semen samples were diluted in Tris egg yolk extender, cooled and equilibrated for 4 h at 5 °C, cryopreserved using programmable freezer (PLANER Kryo 360-1.7) and stored at -196 °C. The organic trace minerals (Zn, Cu and Zn + Cu) protected the spermatozoa against the cryoinjury and maintained higher post-thaw semen parameters except in high Zn group. Additional feeding of organic Cu and Zn to bucks had a protective role and resulted in higher sperm liveability, plasma membrane and acrosome integrities, motility and velocity and reduced oxidative stress in supplemented goats (P < 0.05). Copyright © 2018 Elsevier Inc. All rights reserved.

Exclusion Performance in Dwarf Goats (Capra aegagrus hircus) and Sheep (Ovis orientalis aries)

PubMed Central

Nawroth, Christian; von Borell, Eberhard; Langbein, Jan

2014-01-01

Using a comparative approach, we investigated the ability of dwarf goats and sheep to use direct and indirect information about the location of a food reward in an object-choice task. Subjects had to choose between two cups with only one covering a reward. Before making a choice, subjects received information about the baited (direct information) or non-baited cup (indirect information). Both goats and sheep were able to use direct information (presence of food) in the object choice task. After controlling for local enhancement, we found that goats rather than sheep were able to use indirect information (i.e., the absence of food) to find a reward. The actual test setup could not clarify whether individual goats were able to inferentially reason about the content of the baited cup when only shown the content of the non-baited cup or if they simply avoided the empty cup in that situation. As browsing species, feral and wild goats exhibit highly selective feeding behaviour compared to the rather unselective grazing sheep. The potential influence of this species-specific foraging flexibility of goats and sheep for using direct and indirect information to find a food reward is discussed in relation to a higher aversion to losses in food acquisition in goats compared to sheep. PMID:24695781

Species composition and morphology of protostrongylids (Nematoda: Protostrongylidae) in ruminants from Bulgaria.

PubMed

Panayotova-Pencheva, Mariana Stancheva

2011-10-01

Lungs of 52 ruminants from different regions of Bulgaria, 16 from goats (Capra aegagrus f. domestica L.), 15 from sheep (Ovis ammon f. domestica L.), 11 from mouflons (Ovis musimon L.), and 10 from chamois (Rupicapra rupicapra L.), were investigated. The aim of the study was to determine the species composition of small lungworms in these hosts. The obtained results are summarized with those of previous studies, and a picture of the present status of the species composition of protostrongylids in ruminants from Bulgaria is forwarded. Morphometric data about the species Muellerius capillaris, Cystocaulus ocreatus, Neostrongylus linearis, Protostrongylus brevispiculum, and Protostrongylus rufescens are presented. The data on the morphology of these five species are supplied for the first time both for Bulgaria and the south-east part of the European continent.

Genetic diversity in Egyptian and Italian goat breeds measured with microsatellite polymorphism.

PubMed

Agha, S H; Pilla, F; Galal, S; Shaat, I; D'Andrea, M; Reale, S; Abdelsalam, A Z A; Li, M H

2008-06-01

Seven microsatellite markers were used to study genetic diversity of three Egyptian (Egyptian Baladi, Barki and Zaraibi) and two Italian (Maltese and Montefalcone) goat breeds. The microsatellites showed a high polymorphic information content (PIC) of more than 0.5 in most of the locus-breed combinations and indicated that the loci were useful in assessing within- and between-breed variability of domestic goat (Capra hircus). The expected heterozygosity of the breeds varied from 0.670 to 0.792. In the geographically wider distributed Egyptian Baladi breed there were indications for deviations from random breeding. Analysis of genetic distances and population structure grouped the three Egyptian goat breeds together, and separated them from the two Italian breeds. The studied Mediterranean breeds sampled from African and European populations seem to have differentiated from each other with only little genetic exchange between the geographically isolated populations.

Generation of a transgenic cashmere goat using the piggyBac transposition system.

PubMed

Bai, Ding-Ping; Yang, Ming-Ming; Qu, Lei; Chen, Yu-Lin

2017-04-15

The development of transgenic technologies in the Cashmere goat (Capra hircus) has the potential to improve the quality of the meat and wool. The piggyBac (PB) transposon system is highly efficient and can be used to transpose specific target genes into the genome. Here, we developed a PB transposon system to produce transgenic Cashmere goat fetal fibroblasts (GFFs) with the enhanced green fluorescent protein (EGFP). We then used the genetically modified GFFs as nuclear donors to generate transgenic embryos by somatic cell nuclear transfer (SCNT). The embryos (n = 40) were implanted into female goats (n = 20). One transgenic kid that expressed EGFP throughout the surface features of its body was born. This result demonstrated the usefulness of PB transposon system in generating transgenic Cashmere goats. Copyright © 2017 Elsevier Inc. All rights reserved.

[The organization of health services: the comparison as contribution].

PubMed

Conill, E M; Mendonça, M H; da Silva, R A; Gawryszewski, V

1991-01-01

This article discusses about a recent procedure in health care studies, the comparison as a methodology of analysis. The different analytical currents refer to a particular method of understanding health-disease process. They are: functionalism, the historical-materialism and the new currents. Their phylosophical and sociological basis, concepts, analysis instruments and purposes are showed here by a review of the principal works from representative authors as Navarro, Terris, Roemer, Fry, Illich, Capra and others. The paper suggests that comparative analysis can take two directions: the first is a operational approach for analysing the concrete situations of health's service organization, the second, a more conceptual one, aimed at identifying critical questions and international tendencies in health's systems. The recent discussion search for the overcoming of these dichotomies toward the progress of the production of knowledge and its effects in health's services organization.

Performance and Longevity of a Novel Intraosseous Device in a Goat (Capra hircus) Model

PubMed Central

Jackson, Erin E; Ashley, T Clay; Snowden, Karen F; Gresham, Vincent C; Budke, Christine M; Eichelberger, Bunita M; Taylor, Destiny A

2011-01-01

We performed 2 studies to assess the function and longevity of a novel intraosseous catheter device. For study 1, 9 goats were assigned to 3 groups (intraosseous catheter in the proximal humerus, intraosseous catheter in the proximal tibia, or standard jugular catheter). Devices in the tibia remained in place for less time than did those in the humerus, and no goats exhibited radiographic evidence of resulting damage or structural change in surrounding bone. Positive bacterial cultures were found in all 9 goats at various time points. In study 2, 18 goats were assigned to 2 groups (intraosseous catheter in the wing of the ilium or proximal humerus). Samples for serial aerobic and anaerobic blood cultures and CBC were collected while devices remained in use. Clinical monitoring and removal criteria were identical those for study 1. Catheters in the ilium remained in place for less than 24 h on average, and those in the humerus remained in place for an average of 2.5 d. Several goats with proximal humeral catheters demonstrated moderate lameness after removal, and radiographic evidence of periosteal bone growth was noted in another goat. Bloodwork indicated mild elevations of WBC counts from baseline in some cases. Bacterial growth was found in samples from 4 of 18 goats at various time points. Our study indicated that intraosseous catheters may remain safely in place for more than 24 h, but animals should be monitored closely for negative side effects for several days after removal. PMID:21640033

Chromosome Characteristic of Peranakan Etawa (PE) Goat (Capra hircus Linn.) as Indonesian Local Breed

NASA Astrophysics Data System (ADS)

Putri, A. R. I.; Ciptadi, G.; Warih, A. P.

2018-02-01

Chromosome characteristics of Peranakan Etawa (PE) goat needs to be analyzed because information about Indonesian goat races is very limited. The purpose of this research was to determine the characteristics of PE goat chromosome as basic data as one of the genetic local resources. Blood was collected from pair of PE goat at Sumber Sekar Field Laboratory, Faculty of Animal Husbandry, Brawijaya University, Malang. Blood cultured using standard cytogenetic technique and stained with G-Banding. Observations being done in metaphase cells and analyzed using Genus Cytovision Image. Chromosomes arranged and numbered by standard goat karyotype. The result of this research showed that PE goat had number of chromosomes 2n=60, consisting of 29 pairs of autosome and a pair of sex chromosomes. Female goat had average of total length (TL) of autosome ranged from 47.91 µm±6.46 to 22.12 µm±3.33. TL of chromosome X are 45.96 µm±4,59 and 44.45 µm±3,96. Centromeric index (Ci) of chromosome X, 31,74 and 32,80. PE goat had average of TL of autosome ranged from 58.20µm±6.72 to 18.97µm±2.82. TL of chromosome X is 56,42µm±7,38 and Y chromosome is 15,80 µm±3,24. Ci in chromosome X and Y are 19.34 and 46.84. These results concluded that the total of goat chromosome was 60 with types of autosomal chromosomes were acrocentric as many as 58 chromosomes and pair of sex chromosomes XX and XY, X classified as subtelocentric and Y submetacentric.

Comparison of Four Nuclear Isolation Buffers for Plant DNA Flow Cytometry

PubMed Central

LOUREIRO, JOÃO; RODRIGUEZ, ELEAZAR; DOLEŽEL, JAROSLAV; SANTOS, CONCEIÇÃO

2006-01-01

• Background and Aims DNA flow cytometry requires preparation of suspensions of intact nuclei, which are stained using a DNA-specific fluorochrome prior to analysis. Various buffer formulas were developed to preserve nuclear integrity, protect DNA from degradation and facilitate its stoichiometric staining. Although nuclear isolation buffers differ considerably in chemical composition, no systematic comparison of their performance has been made until now. This knowledge is required to select the appropriate buffer for a given species and tissue. • Methods Four common lysis buffers (Galbraith's, LB01, Otto's and Tris.MgCl2) were used to prepare samples from leaf tissues of seven plant species (Sedum burrito, Oxalis pes-caprae, Lycopersicon esculentum, Celtis australis, Pisum sativum, Festuca rothmaleri and Vicia faba). The species were selected to cover a wide range of genome sizes (1·30–26·90 pg per 2C DNA) and a variety of leaf tissue types. The following parameters were assessed: forward (FS) and side (SS) light scatters, fluorescence of propidium iodide-stained nuclei, coefficient of variation of DNA peaks, presence of debris background and the number of nuclei released from sample tissue. The experiments were performed independently by two operators and repeated on three different days. • Key Results Clear differences among buffers were observed. With the exception of O. pes-caprae, any buffer provided acceptable results for all species. LB01 and Otto's were generally the best buffers, with Otto's buffer providing better results in species with low DNA content. Galbraith's buffer led to satisfactory results and Tris.MgCl2 was generally the worst, although it yielded the best histograms in C. australis. A combined analysis of FS and SS provided a ‘fingerprint’ for each buffer. The variation between days was more significant than the variation between operators. • Conclusions Each lysis buffer tested responded to a specific problem differently

Cost-effectiveness of modified-release prednisone in the treatment of moderate to severe rheumatoid arthritis with morning stiffness based on directly elicited public preference values

PubMed Central

Dunlop, William; Iqbal, Itrat; Khan, Ifty; Ouwens, Mario; Heron, Louise

2013-01-01

Background Assessing the cost-effectiveness of treatments in rheumatoid arthritis (RA) is of growing importance due to the chronic nature of the disease, rising treatment costs, and budget-constrained health care systems. This analysis assesses the cost-effectiveness of modified-release (MR) prednisone compared with immediate-release (IR) prednisone for the treatment of morning stiffness due to RA. Methods A health state transition model was used to categorize RA patients into four health states, defined by duration of morning stiffness. The model applied a 1-year time horizon and adopted a UK National Health Service (NHS) perspective. Health benefits were measured in quality-adjusted life years (QALYs) and the final output was the incremental cost-effectiveness ratio (ICER). Efficacy data were derived from the CAPRA-1 (Circadian Administration of Prednisone in Rheumatoid Arthritis) study, drug costs from the British National Formulary (BNF), and utility data from a direct elicitation time-trade-off (TTO) study in the general population. Sensitivity analyses were conducted. Results Mean treatment costs per patient were higher for MR-prednisone (£649.70) than for IR-prednisone (£46.54) for the duration of the model. However, the model generated an incremental QALY of 0.044 in favor of MR-prednisone which resulted in an ICER of £13,577. Deterministic sensitivity analyses did not lead to significant changes in the ICER. Probabilistic sensitivity analysis reported that MR-prednisone had an 84% probability of being cost-effective at a willingness-to-pay threshold of £30,000 per QALY. The model only considers drug costs and there was a lack of comparative long-term data for IR-prednisone. Furthermore, utility benefits were not captured in the clinical setting. Conclusion This analysis demonstrates that, based on the CAPRA-1 trial and directly elicited public preference values, MR-prednisone is a cost-effective treatment option when compared with IR-prednisone for RA

MiR-103 Controls Milk Fat Accumulation in Goat (Capra hircus) Mammary Gland during Lactation

PubMed Central

Lin, Xianzi; Luo, Jun; Zhang, Liping; Wang, Wei; Gou, Deming

2013-01-01

Milk is the primary source of nutrition for young mammals including humans. The nutritional value of milk is mainly attributable to fats and proteins fractions. In comparison to cow milk, goat milk contains greater amounts of total fat, including much higher levels of the beneficial unsaturated fatty acids. MicroRNAs (miRNAs), a well-defined group of small RNAs containing about 22 nucleotides (nt), participate in various metabolic processes across species. However, little is known regarding the role of miRNAs in regulating goat milk composition. In the present study, we performed high-throughput sequencing to identify mammary gland-enriched miRNAs in lactating goats. We identified 30 highly expressed miRNAs in the mammary gland, including miR-103. Further studies revealed that miR-103 expression correlates with the lactation. Further functional analysis showed that over-expression of miR-103 in mammary gland epithelial cells increases transcription of genes associated with milk fat synthesis, resulting in an up-regulation of fat droplet formation, triglyceride accumulation, and the proportion of unsaturated fatty acids. This study provides new insight into the functions of miR-103, as well as the molecular mechanisms that regulate milk fat synthesis. PMID:24244462

Rumen ciliate protozoa of domestic sheep (Ovis aries) and goat (Capra aegagrus hircus) in Kyrgyzstan.

PubMed

Gürelli, Gözde; Canbulat, Savaş; Aldayarov, Nurbek; Dehority, Burk A

2016-03-01

Species composition and concentration of rumen ciliate protozoa were investigated in the rumen contents of 14 domestic sheep and 1 goat living in Bishkek, Kyrgyzstan. This is the first report on rumen ciliates from ruminants living in Kyrgyzstan. In sheep 12 genera, 28 species and 12 morphotypes were detected, whereas in goat 8 genera, 12 species and 4 morphotypes were detected. The density of ciliates in sheep was (28.1 ± 20.0) × 10(4) cells mL(-1) and in goat was 37.0 × 10(4) cells mL(-1). Dasytricha ruminantium, Isotricha prostoma, Entodinium simulans and Ophryoscolex caudatus were major species (100%) in sheep, and for the first time, Diplodinium rangiferi was detected in a domestic goat. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Expression of HSPs: an adaptive mechanism during long-term heat stress in goats ( Capra hircus)

NASA Astrophysics Data System (ADS)

Dangi, Satyaveer Singh; Gupta, Mahesh; Dangi, Saroj K.; Chouhan, Vikrant Singh; Maurya, V. P.; Kumar, Puneet; Singh, Gyanendra; Sarkar, Mihir

2015-08-01

Menacing global rise in surface temperature compelled more focus of research over understanding heat stress response mechanism of animals and mitigation of heat stress. Twenty-four goats divided into four groups ( n = 6) such as NHS (non-heat-stressed), HS (heat-stressed), HS + VC (heat-stressed administered with vitamin C), and HS + VE + Se (heat-stressed administered with vitamin E and selenium). Except NHS group, other groups were exposed to repeated heat stress (42 °C) for 6 h on 16 consecutive days. Blood samples were collected at the end of heat exposure on days 1, 6, 11, and 16. When groups compared between days, expression of all heat shock proteins (HSPs) showed a similar pattern as first peak on day 1, reached to basal level on the sixth day, and followed by second peak on day 16. The relative messenger RNA (mRNA) and protein expression of HSP 60, HSP70, and HSP90 was observed highest ( P < 0.05) in HS group, followed by antioxidant-administered group on days 1 and 16, which signifies that antioxidants have dampening effect on HSP expression. HSP105/110 expression was highest ( P < 0.05) on day 16. We conclude that HSP expression pattern is at least two-peak phenomenon, i.e., primary window of HSP protection on the first day followed by second window of protection on day 16. HSP60, HSP70, and HSP90 play an important role during the initial phase of heat stress acclimation whereas HSP105/110 joins this cascade at later phase. Antioxidants may possibly attenuate the HSP expression by reducing the oxidative stress.

Expression analysis of NOS family and HSP genes during thermal stress in goat ( Capra hircus)

NASA Astrophysics Data System (ADS)

Yadav, Vijay Pratap; Dangi, Satyaveer Singh; Chouhan, Vikrant Singh; Gupta, Mahesh; Dangi, Saroj K.; Singh, Gyanendra; Maurya, Vijay Prakash; Kumar, Puneet; Sarkar, Mihir

2016-03-01

Approximately 50 genes other than heat shock protein (HSP) expression changes during thermal stress. These genes like nitric oxide synthase (NOS) need proper attention and investigation to find out their possible role in the adaptation to thermal stress in animals. So, the present study was undertaken to demonstrate the expressions of inducible form type II NOS (iNOS), endothelial type III NOS (eNOS), constitutively expressed enzyme NOS (cNOS), HSP70, and HSP90 in peripheral blood mononuclear cells (PBMCs) during different seasons in Barbari goats. Real-time polymerase chain reaction, western blot, and immunocytochemistry were applied to investigate messenger RNA (mRNA) expression, protein expression, and immunolocalization of examined factors. The mRNA and protein expressions of iNOS, eNOS, cNOS, HSP70, and HSP90 were significantly higher ( P < 0.05) during peak summer, and iNOS and eNOS expressions were also observed to be significantly higher ( P < 0.05) during peak winter season as compared with moderate season. The iNOS, eNOS, cNOS, HSP70, and HSP90 were mainly localized in plasma membrane and cytoplasm of PBMCs. To conclude, data generated in the present study indicate the possible involvement of the NOS family genes in amelioration of thermal stress so as to maintain cellular integrity and homeostasis in goats.

A study of the comparative anatomy of the brain of domestic ruminants using magnetic resonance imaging.

PubMed

Schmidt, M J; Langen, N; Klumpp, S; Nasirimanesh, F; Shirvanchi, P; Ondreka, N; Kramer, M

2012-01-01

Although magnetic resonance imaging has been used to examine the brain of domestic ruminants, detailed information relating the precise anatomical features in these species is lacking. In this study the brain structures of calves (Bos taurus domesticus), sheep (Ovis aries), goats (Capra hircus) and a mesaticephalic dog (Canis lupis familiaris) were examined using T2-weighed Turbo Spin Echo sequences; three-dimensional models based on high-resolution gradient echo scans were used to identify brain sulci and gyri in two-dimensional images. The ruminant brains examined were similar in structure and organisation to those of other mammals but particular features included the deep depression of the insula and the pronounced gyri of the cortices, the dominant position of the visual (optic nerve, optic chiasm and rostral colliculus) and olfactory (olfactory bulb, olfactory tracts and piriform lobe) systems, and the relatively large size of the diencephalon. Copyright © 2010 Elsevier Ltd. All rights reserved.

Feeding profile of Mepraia spinolai, a sylvatic vector of Chagas disease in Chile.

PubMed

Chacón, F; Bacigalupo, A; Quiroga, J F; Ferreira, A; Cattan, P E; Ramírez-Toloza, G

2016-10-01

American trypanosomiasis is a chronic disease transmitted mainly by vectors. The hematophagous triatomine vectors transmit Trypanosoma cruzi to a wide variety of mammals, which usually are their food source. This study determined the feeding profile of Mepraia spinolai, a sylvatic triatomine vector, present in endemic areas of Chile. Vectors were captured in the north-central area of Chile. Samples of intestinal contents were analyzed by an Enzyme-linked immunosorbent assay (ELISA) that identifies and discriminates the presence of serum antigens from Homo sapiens and nine animal species (Canis familiaris, Felis catus, Capra hircus, Mus musculus, Gallus gallus, Octodon degus, Thylamys elegans, Phyllotis darwini and Oryctolagus cuniculus). Our data indicate the most frequent feeding source in this area was P. darwini, followed by O. degus, O. cuniculus, M. musculus, G. gallus, T. elegans, C. familiaris, F. catus and C. hircus. Mixed food sources were also identified. Copyright © 2016 Elsevier B.V. All rights reserved.

Morphological and molecular characterization of an uninucleated cyst-producing Entamoeba spp. in captured Rangeland goats in Western Australia.

PubMed

Al-Habsi, Khalid; Yang, Rongchang; Ryan, Una; Jacobson, Caroline; Miller, David W

2017-02-15

Uninucleated Entamoeba cysts measuring 7.3×7.7μm were detected in faecal samples collected from wild Rangeland goats (Capra hircus) after arrival at a commercial goat depot near Geraldton, Western Australia at a prevalence of 6.4% (8/125). Sequences were obtained at the 18S rRNA (n=8) and actin (n=5) loci following PCR amplification. At the 18S locus, phylogenetic analysis grouped the isolates closest with an E. bovis isolate (FN666250) from a sheep from Sweden with 99% similarity. At the actin locus, no E. bovis sequences were available, and the isolates shared 94.0% genetic similarity with E. suis from a pig in Western Japan. This is the first report to describe the morphology and molecular characterisation of Entamoeba from Rangeland goats in Western Australia and the first study to produce actin sequences from E. bovis-like Entamoeba sp. Copyright © 2017 Elsevier B.V. All rights reserved.

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.

PubMed

Bickhart, Derek M; Rosen, Benjamin D; Koren, Sergey; Sayre, Brian L; Hastie, Alex R; Chan, Saki; Lee, Joyce; Lam, Ernest T; Liachko, Ivan; Sullivan, Shawn T; Burton, Joshua N; Huson, Heather J; Nystrom, John C; Kelley, Christy M; Hutchison, Jana L; Zhou, Yang; Sun, Jiajie; Crisà, Alessandra; Ponce de León, F Abel; Schwartz, John C; Hammond, John A; Waldbieser, Geoffrey C; Schroeder, Steven G; Liu, George E; Dunham, Maitreya J; Shendure, Jay; Sonstegard, Tad S; Phillippy, Adam M; Van Tassell, Curtis P; Smith, Timothy P L

2017-04-01

The decrease in sequencing cost and increased sophistication of assembly algorithms for short-read platforms has resulted in a sharp increase in the number of species with genome assemblies. However, these assemblies are highly fragmented, with many gaps, ambiguities, and errors, impeding downstream applications. We demonstrate current state of the art for de novo assembly using the domestic goat (Capra hircus) based on long reads for contig formation, short reads for consensus validation, and scaffolding by optical and chromatin interaction mapping. These combined technologies produced what is, to our knowledge, the most continuous de novo mammalian assembly to date, with chromosome-length scaffolds and only 649 gaps. Our assembly represents a ∼400-fold improvement in continuity due to properly assembled gaps, compared to the previously published C. hircus assembly, and better resolves repetitive structures longer than 1 kb, representing the largest repeat family and immune gene complex yet produced for an individual of a ruminant species.

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

PubMed Central

Bickhart, Derek M.; Rosen, Benjamin D.; Koren, Sergey; Sayre, Brian L.; Hastie, Alex R.; Chan, Saki; Lee, Joyce; Lam, Ernest T.; Liachko, Ivan; Sullivan, Shawn T.; Burton, Joshua N.; Huson, Heather J.; Nystrom, John C.; Kelley, Christy M.; Hutchison, Jana L.; Zhou, Yang; Sun, Jiajie; Crisà, Alessandra; de León, F. Abel Ponce; Schwartz, John C.; Hammond, John A.; Waldbieser, Geoffrey C.; Schroeder, Steven G.; Liu, George E.; Dunham, Maitreya J.; Shendure, Jay; Sonstegard, Tad S.; Phillippy, Adam M.; Van Tassell, Curtis P.; Smith, Timothy P.L.

2018-01-01

The decrease in sequencing cost and increased sophistication of assembly algorithms for short-read platforms has resulted in a sharp increase in the number of species with genome assemblies. However, these assemblies are highly fragmented, with many gaps, ambiguities, and errors, impeding downstream applications. We demonstrate current state of the art for de novo assembly using the domestic goat (Capra hircus), based on long reads for contig formation, short reads for consensus validation, and scaffolding by optical and chromatin interaction mapping. These combined technologies produced the most continuous de novo mammalian assembly to date, with chromosome-length scaffolds and only 649 gaps. Our assembly represents a ~400-fold improvement in continuity due to properly assembled gaps compared to the previously published C. hircus assembly, and better resolves repetitive structures longer than 1 kb, representing the largest repeat family and immune gene complex ever produced for an individual of a ruminant species. PMID:28263316

The goat mammary glandular epithelial (GMGE) cell line promotes polyfucosylation and N,N'-diacetyllactosediaminylation of N-glycans linked to recombinant human erythropoietin.

PubMed

Sánchez, O; Montesino, R; Toledo, J R; Rodríguez, E; Díaz, D; Royle, L; Rudd, P M; Dwek, R A; Gerwig, G J; Kamerling, J P; Harvey, D J; Cremata, J A

2007-08-15

We have established a continuous, non-transformed cell line from primary cultures from Capra hircus mammary gland. Low-density cultures showed a homogeneous epithelial morphology without detectable fibroblastic or myoepithelial cells. The culture was responsive to contact inhibition of proliferation and its doubling time was dependent on the presence of insulin and epidermal growth factor (EGF). GMGE cells secrete caseins regardless of the presence or absence of lactogenic hormones in the culture media. Investigation of the total N-glycan pool of human erythropoietin (rhEPO) expressed in GMGE cells by monosaccharide analysis, HPLC profiling, and mass spectrometry, indicated significant differences with respect to the same protein expressed in Chinese hamster ovary (CHO) cells. N-Glycans of rhEPO-GMGE are core-fucosylated, but fucosylation of outer arms was also found. Our results also revealed the presence of low levels of sialylation (>95% Neu5Ac), N,N'-diacetyllactosediamine units, and possibly Gal-Gal non-reducing terminal elements.

Study of the efficiency of chemically assisted enucleation method for handmade cloning in goat (Capra hircus).

PubMed

Akshey, Y S; Malakar, D; De, A K; Jena, M K; Sahu, S; Dutta, R

2011-08-01

The present investigation was carried out to find an efficient chemically assisted procedure for enucleation of goat oocytes related to handmade cloning (HMC) technique. After 22-h in vitro maturation, oocytes were incubated with 0.5 μg/ml demecolcine for 2 h. Cumulus cells were removed by pipetting and vortexing in 0.5 mg/ml hyaluronidase, and zona pellucida were digested with pronase. Oocytes with extrusion cones were subjected to oriented bisection. One-third of the cytoplasm with the extrusion cone was removed with a micro blade. The remaining cytoplasts were used as recipients in HMC. Goat foetal fibroblasts were used as nuclear donors. The overall efficiency measured as the number of cytoplasts obtained per total number of oocytes used was significantly (p < 0.05) higher in chemically assisted handmade enucleation (CAHE) than oriented handmade enucleation without demecolcine (OHE) (80.02 ± 1.292% vs. 72.9 ± 1.00%, respectively, mean ± SEM). The reconstructed and activated embryos were cultured in embryo development medium (EDM) for 7 days. Fusion, cleavage and blastocyst development rate were 71.63 ± 1.95%, 92.94 ± 0.91% and 23.78 ± 3.33% (mean ± SEM), respectively which did not differ significantly from those achieved with random handmade enucleation and OHE. In conclusion, chemically assisted enucleation is a highly efficient and reliable enucleation method for goat HMC which eliminates the need of expensive equipment (inverted fluorescence microscope) and potentially harmful chromatin staining and ultraviolet (UV) irradiation for cytoplast selection. © 2010 Blackwell Verlag GmbH.

Identification and expression patterns of adipokine genes during adipocyte differentiation in the Tibetan goat (Capra hircus).

PubMed

Li, Xueying; Wang, Yan; Guo, Jiazhong; Zhong, Tao; Li, Li; Zhang, Hongping; Wang, Linjie

2018-02-15

Adipokines are secreted by adipose tissue and play an important role in the regulation of lipid metabolism. However, the information regarding adipokines in goats is limited. PPARγ is a key gene in adipocyte differentiation and activates adipokine genes. Rosiglitazone is a PPARγ agonist and can promote the expression of PPARγ to increase the expression of lipogenesis-related genes. Therefore, investigation of the relationship between rosiglitazone and adipokines will help us to better understand the function of PPARγ in lipid metabolism in Tibetan goats. In this study, we cloned the resistin (RETN), apelin (APLN), fibroblast growth factor 21 (FGF21), and visfatin (NAMPT) genes from non-pregnant female Tibetan goat adipose tissue. APLN and NAMPT were predominantly expressed in the kidney, and FGF21 was expressed at the highest levels in the liver in vivo. In fat tissues, the highest expression levels of FGF21 and RETN were detected in omental fat, whereas their expression in perirenal and subcutaneous fat was extremely weak. APLN and NAMPT were abundantly expressed in omental and subcutaneous fat in vivo. In addition, the four adipokines had different expression profiles during goat adipocyte differentiation in vitro. Oil red O staining showed that rosiglitazone could promote adipocyte differentiation and lipid droplet formation. In addition, rosiglitazone significantly increased the expression of FGF21 and RETN (p<0.05) but decreased the expression of APLN and NAMPT (p<0.05). These results suggest that the four adipocytokine genes may have different roles during goat adipocyte differentiation. And PPARγ could regulate the expression of the four adipokines, but the detailed regulatory mechanism still needs to be elucidated. Copyright © 2017 Elsevier B.V. All rights reserved.

Assessment of reproductive parameters in female Dwarf goat (Capra hircus) on the basis of progesterone profiles.

PubMed

Khanum, Shahnaz Adeeb; Hussain, Mujahid; Kausar, Rehana

2007-12-01

A study was undertaken to look into the reproductive performance of female Dwarf goats reared under traditional conditions at NIAB Farm, Faisalabad, Pakistan. The serum progesterone profile was used to monitor various reproductive parameters (length of postpartum period, resumption of cyclicity, gestation period, prepartum period, parturition) in two lots of goats. Litter size, birth weight of kids and kidding interval were also observed. Most of the animals conceived within 15-59 days of postpartum period. All the does conceived at first or second estrus. During gestation period, higher levels of progesterone were maintained with wide variations falling in the range of 3-13 ng ml(-1). However, a few days before parturition a decline was noticed at 6+/-0.9 days and it reached to the basal level of 0.1 ng ml(-1) after the completion of parturition process. The length of gestation period was found to be 145.8+/-5 days in the first lot and 145.2+/-4 days in the second lot. A very short kidding interval (203.7+/-46 days) and considerably bigger litter size (1.8+/-0.8) was observed. All the parturitions were normal and a considerable weight gain (8.2+/-0.3 kg) of mothers was recorded during pregnancy. The initial birth weight of kids was averaged as 2.1+/-0.5 kg in the first and 1.6+/-0.2 kg in the second lot. It was concluded that Dwarf goat has short gestation length, postpartum period and kidding interval along with multiple births being common. Due to these factors, its reproductive efficiency can be exploited for efficient goat meat production.

Hand-made cloned goat (Capra hircus) embryos—a comparison of different donor cells and culture systems.

PubMed

Akshey, Yogesh S; Malakar, Dhruba; De, Arun K; Jena, Manoj K; Garg, Shweta; Dutta, Rahul; Pawar, Sachin Kumar; Mukesh, Manisha

2010-10-01

Nuclear transfer is a very effective method for propagation of valuable, extinct, and endangered animals. Hand-made cloning (HMC) is an efficient alternative to the conventional micromanipulator-based technique in some domestic species. The present study was carried out for the selection of suitable somatic cells as a nuclear donor and development of an optimum culture system for in vitro culture of zona-free goat cloned embryos. Cleavage and blastocyst rates were observed 72.06 ± 2.94% and 0% for fresh cumulus cells, 81.95 ± 3.40% and 12.74 ± 2.12% for cultured cumulus cells, and 92.94 ± 0.91% and 23.78 ± 3.33% for fetal fibroblast cells, respectively. There was a significant (p < 0.05) increase in blastocyst production in goats when cultured on a flat surface (FS) (23.78 ± 3.33 %) than well of wells (WOW) (15.84 ± 2.12 %) and microdrops (MD) (0.7 ± 0.7%). Furthermore, cleavage and blastocyst production rates were significantly (p < 0.05) more in the WOW (15.84 ± 2.12%) than the MD (0.7 ± 0.7%) system. The quality of HMC blastocysts was studied by differential staining. Genetic similarity was confirmed by polymerase chain reaction (PCR)-based amplification of the second exon of the MHC class II DRB gene, which gave similar bands in electrophoresis (286 bp) both in cloned embryos and donor cells. In conclusion, the present study describes that the fetal fibroblast cell is a suitable candidate as nuclear donor, and the flat surface culture system is suitable for zona-free blastocyst development by the hand-made cloning technique in the goat.

Development of Eimeria ninakohlyakimovae Yakimoff & Rastegaieff, 1930 emend. Levine, 1961 in experimentally infected goats (Capra hircus).

PubMed

Vieira, L S; Lima, J D; Rosa, J S

1997-12-01

The endogenous development and prepatent and patent periods of Eimeria ninakohlyakimovae were studied in 43 1-3-wk-old coccidia-free kids inoculated with 5.0 x 10(4), 1.5 x 10(5), 2.0 x 10(5), or 9.0 x 10(5) sporulated oocysts/kg. Twenty-five kids were killed at 24- or 48-hr intervals, 2-18 days after inoculation (DAI). Two generations of meronts, gamonts, gametes, and oocysts were found in sections stained with hematoxylin and eosin and examined using under light microscopy. The first generation of meronts developed in the endothelium of the lacteals, in the lamina propria, and in the lymphatic vessels of the ileum submucosa. Mature, first-generation meronts, 165.5 x 123.6 microm, were first found 10 DAI. Second-generation merogony developed in the crypt epithelial cells of the cecum and colon; mature meronts, 16.8 x 11.6 microm, were first seen 12 DAI. Gametogenesis occurred in the cecum and colon epithelium; mature microgamonts (16.1 x 13.0 microm), microgametes, macrogametes (14.7 x 12.5 microm), and oocysts (18.3 x 13.3 microm) were seen at 13 DAI. The course of the infection was followed in 18 kids examined every day until 24 DAI. The prepatent period was 14.7 (13-17) days and the patent period 6.8 (4-10) days. The sporulation time at 30 C, with constant aeration, was 2-3 days.

Iron plaque formation and morphoanatomy of roots from species of restinga subjected to excess iron.

PubMed

Siqueira-Silva, Advanio Inácio; da Silva, Luzimar Campos; Azevedo, Aristéa Alves; Oliva, Marco Antonio

2012-04-01

The restingas, a sandy coastal plain ecosystem of Brazil, have received an additional amount of iron due to the activity of mining industries. The present study aims to characterize morphoanatomically and histochemically the iron plaque formation on roots of Ipomoea pes-caprae L. and Canavalia rosea DC, cultivated in hydroponic solution with and without excess iron. The iron plaque formation as well as changes in the external morphology of the lateral roots of both species were observed after the subjection to excess iron. Changes in the nutrient uptake, and in the organization and form of the pericycle and cortex cells were observed for both species. Scanning electron microscopy showed evident iron plaques on the whole surface of the root. The iron was histolocalized in all root tissues of both species. The species of restinga studied here formed iron plaque in their roots when exposed to excess of this element, which may compromise their development in environments polluted by particulated iron. Copyright © 2011 Elsevier Inc. All rights reserved.

Field evaluation of the efficacy of Mycobacterium bovis BCG vaccine against tuberculosis in goats.

PubMed

Vidal, Enric; Arrieta-Villegas, Claudia; Grasa, Miriam; Mercader, Irene; Domingo, Mariano; Pérez de Val, Bernat

2017-08-17

Control of animal tuberculosis (TB) through vaccination has emerged as a long-term strategy to complement test and slaughter control strategy. A pilot trial under field conditions was conducted in a goat herd with high TB prevalence to assess the efficacy of the Mycobacterium bovis BCG vaccine. Twenty-three goat kids vaccinated with BCG and other 22 unvaccinated control kids were euthanized at 18 months post-vaccination. Gross pathological and histopathological examination of target tissues was performed for detection of tuberculous lesions and assessment of vaccine efficacy. Mycobacterial culture and DNA detection were used to confirm Mycobacterium caprae infection. Vaccination significantly reduced the number of animals with TB lesions compared to unvaccinated controls (35% and 77%, respectively; P < 0.01). This reduction was even higher if only extra-pulmonary infection was considered (17% and 68%, respectively; P < 0.001). This trial demonstrates that BCG vaccination of goats can significantly reduce the TB lesion rates in high disease exposure conditions, indicating that vaccination could contribute to the control of TB in domestic goats.

Capturing goats: documenting two hundred years of mitochondrial DNA diversity among goat populations from Britain and Ireland.

PubMed

Cassidy, Lara M; Teasdale, Matthew D; Carolan, Seán; Enright, Ruth; Werner, Raymond; Bradley, Daniel G; Finlay, Emma K; Mattiangeli, Valeria

2017-03-01

The domestic goat ( Capra hircus ) plays a key role in global agriculture, being especially prized in regions of marginal pasture. However, the advent of industrialized breeding has seen a dramatic reduction in genetic diversity within commercial populations, while high extinction rates among feral herds have further depleted the reservoir of genetic variation available. Here, we present the first survey of whole mitochondrial genomic variation among the modern and historical goat populations of Britain and Ireland using a combination of mtDNA enrichment and high throughput sequencing. Fifteen historical taxidermy samples, representing the indigenous 'Old Goat' populations of the islands, were sequenced alongside five modern Irish dairy goats and four feral samples from endangered populations in western Ireland. Phylogenetic and network analyses of European mitochondrial variation revealed distinct groupings dominated by historical British and Irish samples, which demonstrate a degree of maternal genetic structure between the goats of insular and continental Europe. Several Irish modern feral samples also fall within these clusters, suggesting continuity between these dwindling populations and the ancestral 'Old Goats' of Ireland and Britain. © 2017 The Author(s).

Capturing goats: documenting two hundred years of mitochondrial DNA diversity among goat populations from Britain and Ireland

PubMed Central

Carolan, Seán; Enright, Ruth; Werner, Raymond; Bradley, Daniel G.; Finlay, Emma K.; Mattiangeli, Valeria

2017-01-01

The domestic goat (Capra hircus) plays a key role in global agriculture, being especially prized in regions of marginal pasture. However, the advent of industrialized breeding has seen a dramatic reduction in genetic diversity within commercial populations, while high extinction rates among feral herds have further depleted the reservoir of genetic variation available. Here, we present the first survey of whole mitochondrial genomic variation among the modern and historical goat populations of Britain and Ireland using a combination of mtDNA enrichment and high throughput sequencing. Fifteen historical taxidermy samples, representing the indigenous ‘Old Goat’ populations of the islands, were sequenced alongside five modern Irish dairy goats and four feral samples from endangered populations in western Ireland. Phylogenetic and network analyses of European mitochondrial variation revealed distinct groupings dominated by historical British and Irish samples, which demonstrate a degree of maternal genetic structure between the goats of insular and continental Europe. Several Irish modern feral samples also fall within these clusters, suggesting continuity between these dwindling populations and the ancestral ‘Old Goats’ of Ireland and Britain. PMID:28250207

Use of a staphylococcal vaccine to reduce prevalence of mastitis and lower somatic cell counts in a registered Saanen dairy goat herd.

PubMed

Kautz, F M; Nickerson, S C; Ely, L O

2014-08-01

This investigation evaluated the efficacy of a bacterin in reducing the prevalence of staphylococcal mastitis and somatic cell counts (SCC) in a dairy goat herd. Does were vaccinated or left as controls, and the levels of mastitis and SCC monitored over 18 months. Staphylococcus caprae (42.5%), S. xylosus (15.1%), and S. simulans (10.0%) were the predominant causes of intramammary infections (IMI). The infection rate was 1.64 IMI/doe among vaccinates, which tended to be lower (P < 0.12) than controls (2.67 IMI/doe). The spontaneous cure rate of IMI after immunization was 1.28 cures/doe in vaccinates, which was higher than controls (0.6 cures/doe; P < 0.043). Average SCC of milk samples from vaccinates tended to be lower than that of controls (1274 × 10(3)/ml vs. 1529 × 10(3)/ml, respectively) (P < 0.10). Results support the continued study of mastitis vaccines for use in managing staphylococcal mastitis and SCC in dairy goats. Published by Elsevier Ltd.

Seasonal modulation of immunity by melatonin and gonadal steroids in a short day breeder goat Capra hircus.

PubMed

Ghosh, Somenath; Singh, Amaresh K; Haldar, Chandana

2014-11-01

Role of melatonin in regulation of immunity and reproduction has never been studied in detail in goats. The aim of the present study was to explore hormonal regulation of immunity in goats with special reference to melatonin. Plasma of male and female goats (n = 18 per sex per season) was processed for hormonal (estrogen, testostrone, and melatonin) and cytokine (interleukin [IL-2], IL-6, and tumor necrosis factor α) measurements during three seasons, i.e., summer, monsoon, and winter. To assess cell-mediated immune response, percent stimulation ratio of thymocytes was recorded during three seasons. To support and establish the modulation by hormones, Western blot analysis for expressions of melatonin receptors (MT1, MT2), androgen receptor, and estrogen receptor α and estimations of marker enzymes, arylalkylamine N-acetyltransferase for melatonin and 3β-hydroxysteroid dehydrogenase activities for steroidogenesis were performed in thymus. All the hormones and cytokines were estimated by commercial kits. Biochemical, immunologic, and Western blot analyses were done by standardized protocols. We noted a significant increase in estrogen and testosterone levels (P < 0.05) in circulation during monsoon along with melatonin (P < 0.05) presenting a parallel relationship. Expressions of melatonin receptors (MT1 and MT2) in thymus of both the sexes were significantly high (P < 0.01) during winter. Estrogen receptor α expression in female thymus was significantly high during monsoon (P < 0.05). However, androgen receptor showed almost static expression pattern in male thymus during three seasons. Further, both arylalkylamineN-acetyltransferase and 3β-hydroxysteroid dehydrogenase enzyme activities were significantly high (P < 0.05; P < 0.01, respectively) during monsoon. These results suggest that there may be a functional parallelism between gonadal steroids and melatonin as melatonin is progonadotrophic in goats. Cell-mediated immune parameters (percent stimulation ratio of thymocytes) and circulatory levels of cytokines (IL-2, IL-6, and tumor necrosis factor α) were significantly high (P < 0.01) during monsoon. In vitro supplementation of gonadal steroids to T-cell culture suppressed immunity but cosupplementation with melatonin restored it. Further, we may also suggest that reproductive and immune seasonality are maintained by variations in circulatory hormones and local synthesis of melatonin and gonadal steroids. These functional interactions between melatonin and gonadal steroid might be of great importance in regulating the goat immunity by developing some hormonal microcircuit (gonadal steroid and melatonin) in lymphatic organs. Copyright © 2014 Elsevier Inc. All rights reserved.

The Effects of Prenatal Stocking Densities on the Fear Responses and Sociality of Goat (Capra hircus) Kids

PubMed Central

Chojnacki, Rachel M.; Vas, Judit; Andersen, Inger Lise

2014-01-01

Prenatal stress (stress experienced by a pregnant mother) and its effects on offspring have been comprehensively studied but relatively little research has been done on how prenatal social stress affects farm animals such as goats. Here, we use the operational description of ‘stress’ as “physical or perceived threats to homeostasis.” The aim of this study was to investigate the prenatal effects of different herd densities on the fear responses and sociality of goat kids. Pregnant Norwegian dairy goats were exposed to high, medium or low prenatal animal density treatments throughout gestation (1.0, 2.0 or 3.0 m2 per animal, respectively). One kid per litter was subjected to two behavioral tests at 5 weeks of age. The ‘social test’ was applied to assess the fear responses, sociality and social recognition skills when presented with a familiar and unfamiliar kid and the ‘separation test’ assessed the behavioral coping skills when isolated. The results indicate goat kids from the highest prenatal density of 1.0 m2 were more fearful than the kids from the lower prenatal densities (i.e. made more escape attempts (separation test: P < 0.001) and vocalizations (social test: P < 0.001; separation test: P < 0.001). This effect was more pronounced in females than males in the high density (vocalizations; social test: P < 0.001; separation test: P  =  0.001) and females were generally more social than males. However, goat kids did not differentiate between a familiar and an unfamiliar kid at 5 weeks of age and sociality was not affected by the prenatal density treatment. We conclude that high animal densities during pregnancy in goats produce offspring that have a higher level of fear, particularly in females. Behavioral changes in offspring that occur as an effect of prenatal stress are of high importance as many of the females are recruited to the breeding stock of dairy goats. PMID:24710177

CHEMICAL AND BIOLOGICAL STABILITY OF ARTEMISININ IN COW RUMEN FLUID AND ITS KINETICS IN GOATS (CAPRA HIRCUS)

USDA-ARS?s Scientific Manuscript database

There is a pressing need to develop alternative, natural anthelmintics to control widespread drug-resistant gastrointestinal nematodes in ruminants, such as Haemonchus contortus. Artemisinin and its semi-synthetic derivatives are widely used against drug-resistant Plasmodium falciparum, but their r...

Mandibular corpus bone strains during mastication in goats (Capra hircus): a comparison of ingestive and rumination chewing.

PubMed

Williams, Susan H; Stover, Kristin K; Davis, Jillian S; Montuelle, Stephane J

2011-10-01

To compare the mechanical loading environment of the jaw in goats during ingestive and rumination chewing. Rosette strain gauges were attached to the external surface of the mandibular corpus in five goats to record bone strains during the mastication of hay and rumination. Strain magnitudes and maximum physiological strain rates during the mastication of hay are significantly higher than during rumination chewing on the working and balancing sides. Principal strain ratios and orientations are similar between the two chewing behaviours. Loading and chewing cycle duration are all longer during rumination chewing, whereas chew duty factor and variances in load and chewing cycle durations are higher during ingestive chewing. For most of the variables, differences in strain magnitudes or durations are similar at all three gauge sites, suggesting that rumination and ingestive chewing do not differentially influence bone at the three gauge sites. Despite lower strain magnitudes, the repetitive nature of rumination chewing makes it an important component of the mechanical loading environment of the selenodont artiodactyl jaw. However, similarities in principal strain orientations and ratios indicate that rumination chewing need not be considered as a unique loading behaviour influencing the biomechanics of the selenodont artiodactyl jaw. Differences in loading and chewing cycle durations during rumination and ingestion demonstrate flexibility in adult chewing frequencies. Finally, although the low within-sequence variability in chewing cycle durations supports the hypothesis that mammalian mastication is energetically efficient, chewing during rumination may not be more efficient than during ingestion. Copyright © 2011 Elsevier Ltd. All rights reserved.

Modulatory effect of betaine on expression dynamics of HSPs during heat stress acclimation in goat (Capra hircus).

PubMed

Dangi, Satyaveer Singh; Dangi, Saroj K; Chouhan, V S; Verma, M R; Kumar, Puneet; Singh, Gyanendra; Sarkar, Mihir

2016-01-10

Changing climatic scenario with expected global rise in surface temperature compelled more focus of research over decoding heat stress response mechanism of animals and mitigation of heat stress. Recently betaine, a trimethyl form of glycine has been found to ameliorate heat stress in some species of animals. To overcome deleterious effect of heat stress, an attempt was taken to investigate the effect of betaine supplementation on heat stress mitigation in goats. Eighteen female Barbari goats were taken and randomly divided into 3 groups (n=6) such as control, HS (Heat stressed), HS+B (Heat stressed administered with betaine). Except for the control group, other groups were exposed to repeated heat stress (42 °C) for 6 h for sixteen consecutive days. Blood samples were collected at the end of heat exposure on day 1 (Initial heat stress acclimation - IHSA), day 6 (Short term heat stress acclimation - STHSA) and day 16 (Long term heat stress acclimation - LTHSA). When the groups were compared between different heat stress acclimatory phases, expression of all HSPs (HSP60, HSP70, HSP90 and HSP105/110) showed a similar pattern with a first peak on IHSA, reaching a basal level on STHSA followed by second peak on LTHSA. The messenger RNA (mRNA) and protein expression of HSPs was observed to be higher (P<0.05) in HS group than HS+B group except HSP90 on IHSA and HSP60 on STHSA. HSP105/110 expression was highest (P<0.05) on LTHSA. Immunocytochemical analysis revealed that HSPs were mainly localized both in nucleus and cytoplasm of PBMCs. In conclusion, heat stress increases HSPs expression and betaine administration was shown to have a dwindling effect on expression of HSPs, suggesting a possible role of this chemical chaperone on heat stress amelioration. Copyright © 2015 Elsevier B.V. All rights reserved.

Evaluation of medicinal plant extracts against blood-sucking parasites.

PubMed

Kamaraj, Chinnaperumal; Rahuman, Abdul Abdul; Bagavan, Asokan; Elango, Gandhi; Rajakumar, Govindasamy; Zahir, Abdul Abduz; Marimuthu, Sampath; Santhoshkumar, Thirunavukkarasu; Jayaseelan, Chidambaram

2010-05-01

The present study was based on assessments of the antiparasitic activities to determine the efficacies of acetone, chloroform, ethyl acetate, hexane, and methanol dried leaf, flower, and seed extracts of Cassia auriculata L., Rhinacanthus nasutus KURZ., Solanum torvum Swartz, Terminalia chebula Retz., and Vitex negundo Linn. were tested against larvae of cattle tick Rhipicephalus (Boophilus) microplus Canestrini, 1887 (Acari: Ixodidae), adult of Haemaphysalis bispinosa Neumann, 1897 (Acarina: Ixodidae), hematophagous fly Hippobosca maculata Leach (Diptera: Hippoboscidae), nymph of goat-lice Damalinia caprae Gurlt (Trichodectidae), and adult sheep parasite Paramphistomum cervi Zeder, 1790 (Digenea: Paramphistomatidae). All plant extracts showed moderate parasitic effects after 24 h of exposure at 3,000 ppm; however, the highest parasite mortality was found in leaf ethyl acetate, flower methanol of C. auriculata, leaf and seed methanol of S. torvum, seed acetone of T. chebula, and leaf hexane extracts of V. negundo against the larvae of R. microplus (LC(50) = 335.48, 309.21, 297.43, 414.99, 167.20, and 611.67 ppm; LC(90) = 1571.58, 1111.82, 950.98, 1243.64, 595.31, and 1875.50 ppm), the leaf and flower methanol of R. nasutus, leaf and seed methanol of S. torvum, and seed methanol extracts of T. chebula against the nymph of D. caprae (LC(50) = 119.26,143.10,164.93,140.47, and 155.98 ppm; LC(90) = 356.77, 224.08, 546.20, 479.72, and 496.06 ppm), the leaf methanol of R. nasutus, leaf and seed methanol of S.torvum, and seed acetone of T. chebula against the adult of H. bispinosa (LC(50) = 333.15, 328.98, 312.28, and 186.46 ppm; LC(90) = 1056.07, 955.39, 946.63, and 590.76 ppm), the leaf methanol of C. auriculata, the leaf and flower methanol of R. nasutus, the leaf ethyl acetate of S. torvum against the H. maculata (LC(50) = 303.36, 177.21, 204.58, and 211.41 ppm; LC(90) = 939.90, 539.39, 599.43, and 651.90 ppm), and the leaf acetone of C. auriculata, the flower methanol

Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas

PubMed Central

Fernández, Helena; Hughes, Sandrine; Vigne, Jean-Denis; Helmer, Daniel; Hodgins, Greg; Miquel, Christian; Hänni, Catherine; Luikart, Gordon; Taberlet, Pierre

2006-01-01

Goats were among the first farm animals domesticated, ≈10,500 years ago, contributing to the rise of the “Neolithic revolution.” Previous genetic studies have revealed that contemporary domestic goats (Capra hircus) show far weaker intercontinental population structuring than other livestock species, suggesting that goats have been transported more extensively. However, the timing of these extensive movements in goats remains unknown. To address this question, we analyzed mtDNA sequences from 19 ancient goat bones (7,300–6,900 years old) from one of the earliest Neolithic sites in southwestern Europe. Phylogenetic analysis revealed that two highly divergent goat lineages coexisted in each of the two Early Neolithic layers of this site. This finding indicates that high mtDNA diversity was already present >7,000 years ago in European goats, far from their areas of initial domestication in the Near East. These results argue for substantial gene flow among goat populations dating back to the early neolithisation of Europe and for a dual domestication scenario in the Near East, with two independent but essentially contemporary origins (of both A and C domestic lineages) and several more remote and/or later origins. PMID:17030824

The performance of bonobos (Pan paniscus), chimpanzees (Pan troglodytes), and orangutans (Pongo pygmaeus) in two versions of an object-choice task.

PubMed

Mulcahy, Nicholas J; Call, Josep

2009-08-01

The object-choice task tests animals' ability to use human-given cues to find a hidden reward located in 1 of 2 (or more) containers. Great apes are generally unskillful in this task whereas other species including dogs (Canis familiaris) and goats (Capra hircus) can use human-given cues to locate the reward. However, great apes are typically positioned proximal to the containers when receiving the experimenter's cue whereas other species are invariably positioned distally. The authors investigated how the position of the subject, the human giving the cue and the containers (and the distance among them) affected the performance of 19 captive great apes. Compared to the proximal condition, the distal condition involved larger distances and, critically, it reduced the potential ambiguity of the cues as well as the strong influence that the sight of the containers may have had when subjects received the cue. Subjects were far more successful in the distal compared to the proximal condition. The authors suggest several possibilities to account for this difference and discuss our findings in relation to previous and future object-choice research. Copyright 2009 APA, all rights reserved.

Evaluation of the Biotyper MALDI-TOF MS system for identification of Staphylococcus species.

PubMed

Zhu, Wenming; Sieradzki, Krzysztof; Albrecht, Valerie; McAllister, Sigrid; Lin, Wen; Stuchlik, Olga; Limbago, Brandi; Pohl, Jan; Kamile Rasheed, J

2015-10-01

The Bruker Biotyper MALDI-TOF MS (Biotyper) system, with a modified 30 minute formic acid extraction method, was evaluated by its ability to identify 216 clinical Staphylococcus isolates from the CDC reference collection comprising 23 species previously identified by conventional biochemical tests. 16S rDNA sequence analysis was used to resolve discrepancies. Of these, 209 (96.8%) isolates were correctly identified: 177 (84.7%) isolates had scores ≥2.0, while 32 (15.3%) had scores between 1.70 and 1.99. The Biotyper identification was inconsistent with the biochemical identification for seven (3.2%) isolates, but the Biotyper identifications were confirmed by 16S rDNA analysis. The distribution of low scores was strongly species-dependent, e.g. only 5% of Staphylococcus epidermidis and 4.8% of Staphylococcus aureus isolates scored below 2.0, while 100% of Staphylococcus cohnii, 75% of Staphylococcus sciuri, and 60% of Staphylococcus caprae produced low but accurate Biotyper scores. Our results demonstrate that the Biotyper can reliably identify Staphylococcus species with greater accuracy than conventional biochemicals. Broadening of the reference database by inclusion of additional examples of under-represented species could further optimize Biotyper results. Published by Elsevier B.V.

Enzyme-free detection and quantification of double-stranded nucleic acids.

PubMed

Feuillie, Cécile; Merheb, Maxime Mohamad; Gillet, Benjamin; Montagnac, Gilles; Hänni, Catherine; Daniel, Isabelle

2012-08-01

We have developed a fully enzyme-free SERRS hybridization assay for specific detection of double-stranded DNA sequences. Although all DNA detection methods ranging from PCR to high-throughput sequencing rely on enzymes, this method is unique for being totally non-enzymatic. The efficiency of enzymatic processes is affected by alterations, modifications, and/or quality of DNA. For instance, a limitation of most DNA polymerases is their inability to process DNA damaged by blocking lesions. As a result, enzymatic amplification and sequencing of degraded DNA often fail. In this study we succeeded in detecting and quantifying, within a mixture, relative amounts of closely related double-stranded DNA sequences from Rupicapra rupicapra (chamois) and Capra hircus (goat). The non-enzymatic SERRS assay presented here is the corner stone of a promising approach to overcome the failure of DNA polymerase when DNA is too degraded or when the concentration of polymerase inhibitors is too high. It is the first time double-stranded DNA has been detected with a truly non-enzymatic SERRS-based method. This non-enzymatic, inexpensive, rapid assay is therefore a breakthrough in nucleic acid detection.

Perspectives on the History of Bovine TB and the Role of Tuberculin in Bovine TB Eradication

PubMed Central

Good, Margaret; Duignan, Anthony

2011-01-01

Tuberculosis remains a significant disease of animals and humans worldwide. Bovine tuberculosis is caused by Mycobacteria with an extremely wide host range and serious, although currently probably underdiagnosed, zoonotic potential. Where bovine tuberculosis controls are effective, human zoonotic TB, due to Mycobacterium bovis or M. caprae, is uncommon and clinical cases are infrequent in cattle. Therefore, the control and ultimate eradication of bovine tuberculosis is desirable. Tuberculin tests are the primary screening tool used in bovine eradication. The choice of tuberculin test is dependent on the environment in which it is to be used. Tuberculin potency is critical to test performance, and the accurate determination of potency is therefore particularly important. The design of a control or eradication programme should take into consideration the fundamental scientific knowledge, the epidemiological profile of disease, the experience of other eradication programmes, and the presence, in the same ecosystem, of maintenance hosts, in which infection is self-sustaining and which are capable of transmitting infection. A control or eradication programme will necessarily require modification as it progresses and must be under constant review to identify the optimal desirable goals, the efficacy of policy, and constraints to progress. PMID:21547209

Identification of Staphylococcus spp. using (GTG)₅-PCR fingerprinting.

PubMed

Svec, Pavel; Pantůček, Roman; Petráš, Petr; Sedláček, Ivo; Nováková, Dana

2010-12-01

A group of 212 type and reference strains deposited in the Czech Collection of Microorganisms (Brno, Czech Republic) and covering 41 Staphylococcus species comprising 21 subspecies was characterised using rep-PCR fingerprinting with the (GTG)₅ primer in order to evaluate this method for identification of staphylococci. All strains were typeable using the (GTG)₅ primer and generated PCR products ranging from 200 to 4500 bp. Numerical analysis of the obtained fingerprints revealed (sub)species-specific clustering corresponding with the taxonomic position of analysed strains. Taxonomic position of selected strains representing the (sub)species that were distributed over multiple rep-PCR clusters was verified and confirmed by the partial rpoB gene sequencing. Staphylococcus caprae, Staphylococcus equorum, Staphylococcus sciuri, Staphylococcus piscifermentans, Staphylococcus xylosus, and Staphylococcus saprophyticus revealed heterogeneous fingerprints and each (sub)species was distributed over several clusters. However, representatives of the remaining Staphylococcus spp. were clearly separated in single (sub)species-specific clusters. These results showed rep-PCR with the (GTG)₅ primer as a fast and reliable method applicable for differentiation and straightforward identification of majority of Staphylococcus spp. Copyright © 2010 Elsevier GmbH. All rights reserved.

Between brushstrokes

NASA Astrophysics Data System (ADS)

Hagan, Catherine Beverly Anne Rodin

This thesis explores the fundamental experiential connections between visual art and science. The author links the academic text to multiple visual essays in an exploration of the holistic teaching and learning methodologies in visual art pedagogy. An examination of the educational philosophies of Dewey and Steiner supports the focus on experience as education. The philosophies of Eisner, Goudy, Dewey, London, Arnheim and Wallschlaeger provide a foundation for the overall structure of the separate concepts of visual art. The inclusion of visual essays and the hermeneutical mode in which they are sequenced follows the theories and examples of Sontag, Barthes, Berger, Silvers and Wilde. Creativity studies conducted by Csikszentmihalyi and the theories of invention in science investigated by Kuhn and Judson connect the creative process in visual art to science. Sheen, Feynman, D'Arcy Thompson and Capra offer a perspective on the learning, teaching and evaluation methodologies and philosophy in the area of science, particularly physics, botany and geometry. The examination of these theories as background, combined with narrative experiences and the exploratory visual component, draw out conclusions and implications about the untapped potential of visual art in education.

Purification, crystallization and preliminary X-ray diffraction studies on goat (Capra hircus) hemoglobin - a low oxygen affinity species.

PubMed

Moorthy, Ponnuraj Sathya; Neelagandan, Kamariah; Balasubramanian, Moovarkumudalvan; Ponnuswamy, Mondikalipudur Nanjappa Gounder

2009-01-01

Hemoglobin is a vital protein present in almost all higher species. It is a transport protein involved in carrying oxygen from lungs to tissues and carbon dioxide back to lungs by an intrinsically coordinated manner. Even though a good amount of work has been carried out in this direction there exists scarcity of structural insight on low oxygen affinity species. Attempts are being made to unravel the structural insight of this low oxygen affinity species. Goat blood plasma was collected, treated with EDTA to avoid blood clotting and purification was accomplished using DEAE-anion chromatographic column. The goat hemoglobin was crystallized using 50mM of phosphate buffer at pH 6.7 with 1M NaCl and PEG 3350 as precipitant by hanging drop vapor diffusion method. Crystals obtained are screened and suitable crystals are taken for data collection using mar345dtb as image plate detector system. Goat hemoglobin crystal diffracted up to 2.61 A resolution. Goat hemoglobin crystallizes in orthorhombic space group P212(1)2(1) as a whole biological molecule in the asymmetric unit with cell dimensions a=53.568A, b=67.365A, c=154.183A.

Selection of reference genes for gene expression studies related to intramuscular fat deposition in Capra hircus skeletal muscle.

PubMed

Zhu, Wuzheng; Lin, Yaqiu; Liao, Honghai; Wang, Yong

2015-01-01

The identification of suitable reference genes is critical for obtaining reliable results from gene expression studies using quantitative real-time PCR (qPCR) because the expression of reference genes may vary considerably under different experimental conditions. In most cases, however, commonly used reference genes are employed in data normalization without proper validation, which may lead to incorrect data interpretation. Here, we aim to select a set of optimal reference genes for the accurate normalization of gene expression associated with intramuscular fat (IMF) deposition during development. In the present study, eight reference genes (PPIB, HMBS, RPLP0, B2M, YWHAZ, 18S, GAPDH and ACTB) were evaluated by three different algorithms (geNorm, NormFinder and BestKeeper) in two types of muscle tissues (longissimus dorsi muscle and biceps femoris muscle) across different developmental stages. All three algorithms gave similar results. PPIB and HMBS were identified as the most stable reference genes, while the commonly used reference genes 18S and GAPDH were the most variably expressed, with expression varying dramatically across different developmental stages. Furthermore, to reveal the crucial role of appropriate reference genes in obtaining a reliable result, analysis of PPARG expression was performed by normalization to the most and the least stable reference genes. The relative expression levels of PPARG normalized to the most stable reference genes greatly differed from those normalized to the least stable one. Therefore, evaluation of reference genes must be performed for a given experimental condition before the reference genes are used. PPIB and HMBS are the optimal reference genes for analysis of gene expression associated with IMF deposition in skeletal muscle during development.

A comparative study of salivary secretion by parotid and mandibular glands of anaesthetized Capra hircus: effect of pilocarpine.

PubMed

Castellano, C; Moreno, M; Raggi, L A; Martinez de Victoria, E; Mataix, F J

1986-01-01

A study was made of basal secretion and the effect of the infusion of pilocarpine on the flow and composition of saliva in the parotid and mandibular glands of the anaesthetized lactating goat. In the parotid gland there was a basal flow (1.6 +/- 0.29 microliter/min) which was not present in the mandibular gland. There is a statistically significant dose-effect relationship between pilocarpine and salivary flow in both glands. Salival composition and its variation with respect to the flow of saliva did not conform to either of the two glands to an exclusive monogastric or ruminant model.

Sexual maturation and fertility of male Nigerian Dwarf goat (Capra hircus) clones produced by somatic cell nuclear transfer.

PubMed

Gauthier, M; Pierson, J; Drolet, M; Bhatia, B; Baldassarre, H; Keefer, C L

2001-01-01

Three, genetically identical, Nigerian Dwarf bucks produced by somatic cell nuclear transfer (NT) of fetal fibroblasts were monitored for sexual maturation and fertility. Starting at four months of age, these male clones were trained to serve an artificial vagina (AV). Average age of the NT-derived bucks at first semen collection was 20 weeks, which was not different from that of other young bucks of this breed (average age at first collection = 20 weeks). Average sperm production at 5 months of age for the NT-derived bucks was 5.0 x 10(8) spermatozoa, which was comparable to that of dwarf bucks of similar age (3.4 x 10(8) spermatozoa). At seven months of age, semen collected from two NT-derived bucks was used to artificially inseminate six females (three does per buck). Five does were confirmed pregnant by ultrasound at day 42. Nine healthy kids, four males and five females, were born in March and April 2000. Viable spermatozoa were collected from one of the F1 males at 28 weeks of age. These results demonstrated that NT-derived bucks and one of their male offspring developed sexually within the normal timeframe for their breed and that the clones were fertile.

Collaborative Research: A Model of Partially Ionized Plasma Flows with Kinetic Treatment of Neutral Atoms and Nonthermal Ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pogorelov, Nikolai; Zhang, Ming; Borovikov, Sergey

��Planck equation, or as a separate fluid. Our numerical simulations have demonstrated that pickup ions play a major role in the interaction of the solar wind and (partially ionized) interstellar medium plasmas. Our teams have investigated the stability of the surface (the heliopause) that separates the solar wind from the local interstellar medium, the transport of galactic cosmic rays, the properties of the heliotail flow, and modifications to the bow wave in front of the heliopause due to charge exchange between the neutral H atoms born in the solar wind and interstellar ions. Modeling results have been validated against observational data, such as obtained by the Interstellar Boundary Explorer (IBEX), and made it possible to shed light on the structure of energetic neutral atom maps created by this spacecraft.. We have also demonstrated that charge-exchange modulated heliosphere is a source of anisotropy of the multi-TeV cosmic ray flux observed in a number of Earth-bound air shower experiments. Newly developed codes are implemented within a Multi-Scale Fluid-Kinetic Simulation Suite (MS-FLUKSS), a publicly available code being developed by our team for over 12 years. MS-FLUKSS scales well up to 160,000 computing cores and has been ported on major supercomputers in the country. Efficient parallelization and data choreography in the continuum simulation modules are provided by Chombo, an adaptive mesh refinement framework managed by Phillip Colella’s team at LBNL. We have implemented in-house, hybrid (MPI+OpenMP) parallelization of the kinetic modules that solve the Boltzmann equation with a Monte Carlo method. Currently, the kinetic modules are being rewritten to take advantage of the modern CPU-GPU supercomputer architecture. The scope of the project allowed us to enhance plasma research and education in such broad, multidis- ciplinary field as physics of partially ionized plasma and its application to space physics and fusion science. Besides the impact on the modeling of

Collaborative Research: A Model of Partially Ionized Plasma Flows with Kinetic Treatment of Neutral Atoms and Nonthermal Ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pogorelov, Nikolai; Zhang, Ming

--Planck equation, or as a separate fluid. Our numerical simulations have demonstrated that pickup ions play a major role in the interaction of the solar wind and (partially ionized) interstellar medium plasmas. Our teams have investigated the stability of the surface (the heliopause) that separates the solar wind from the local interstellar medium, the transport of galactic cosmic rays, the properties of the heliotail flow, and modifications to the bow wave in front of the heliopause due to charge exchange between the neutral H atoms born in the solar wind and interstellar ions. Modeling results have been validated against observational data, such as obtained by the Interstellar Boundary Explorer (IBEX), and made it possible to shed light on the structure of energetic neutral atom maps created by this spacecraft.. We have also demonstrated that charge-exchange modulated heliosphere is a source of anisotropy of the multi-TeV cosmic ray flux observed in a number of Earth-bound air shower experiments. Newly developed codes are implemented within a Multi-Scale Fluid-Kinetic Simulation Suite (MS-FLUKSS), a publicly available code being developed by our team for over 12 years. MS-FLUKSS scales well up to 160,000 computing cores and has been ported on major supercomputers in the country. Efficient parallelization and data choreography in the continuum simulation modules are provided by Chombo, an adaptive mesh refinement framework managed by Phillip Colella's team at LBNL. We have implemented in-house, hybrid (MPI+OpenMP) parallelization of the kinetic modules that solve the Boltzmann equation with a Monte Carlo method. Currently, the kinetic modules are being rewritten to take advantage of the modern CPU-GPU supercomputer architecture. The scope of the project allowed us to enhance plasma research and education in such broad, multidisciplinary field as physics of partially ionized plasma and its application to space physics and fusion science. Besides the impact on the modeling of

Gross, histologic, and computed tomographic characterization of nonpathological intrascleral cartilage and bone in the domestic goat (Capra aegagrus hircus).

PubMed

Tusler, Charlotte A; Good, Kathryn L; Maggs, David J; Zwingenberger, Allison L; Reilly, Christopher M

2017-05-01

To characterize grossly, histologically, and via computed tomography (CT) the appearance of intrascleral cartilage, bone, or both in domestic goats with otherwise normal eyes and to correlate this with age, sex, and breed. Sixty-eight domestic goats (89 eyes). Forty-nine formalin-fixed globes from 38 goats underwent high-resolution CT, and gross and light microscopic examination. An additional 40 eyes from 30 goats underwent light microscopy only. Age, breed, and sex of affected goats were retrieved from medical records. Considering all methods of evaluation collectively, cartilage was detected in 42% of eyes (44% of goats) and bone in 11% of eyes (12% of goats); bone was never seen without cartilage. Goats in which bone, cartilage, or both were detected ranged from 0.25 to 13 (median = 3.5) years of age, represented 11 of 12 breeds of the study population, and had a male:female ratio of 11:19. Bone was detected in the eyes of significantly more males (n = 8) than females (n = 2). No sex predilection was noted for cartilage alone. Histology revealed intrascleral chondrocyte-like cells, hyaline cartilage, and islands of lamellar bone. Some regions of bone had central, adipose-rich, marrow-like cavities. CT localized mineralized tissue as adjacent to or partially surrounding the optic nerve head. This is the first report of intrascleral bone or cartilage in a normal goat and of intrascleral bone in an otherwise normal mammal. The high prevalence of intrascleral cartilage and bone in this study suggests that this finding is normal and likely represents an adaptation in goats. © 2016 American College of Veterinary Ophthalmologists.