Sedimentary Rocks of Aram Chaos

NASA Technical Reports Server (NTRS)

2004-01-01

4 February 2004 Aram Chaos is a large meteor impact crater that was nearly filled with sediment. Over time, this sediment was hardened to form sedimentary rock. Today, much of the eastern half of the crater has exposures of light-toned sedimentary rock, such as the outcrops shown in this Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image. The picture is located near 2.0oN, 20.3oW, and covers an area 3 km (1.9 mi) wide. Sunlight illuminates the scene from the left.

Supercomputer analysis of sedimentary basins.

PubMed

Bethke, C M; Altaner, S P; Harrison, W J; Upson, C

1988-01-15

Geological processes of fluid transport and chemical reaction in sedimentary basins have formed many of the earth's energy and mineral resources. These processes can be analyzed on natural time and distance scales with the use of supercomputers. Numerical experiments are presented that give insights to the factors controlling subsurface pressures, temperatures, and reactions; the origin of ores; and the distribution and quality of hydrocarbon reservoirs. The results show that numerical analysis combined with stratigraphic, sea level, and plate tectonic histories provides a powerful tool for studying the evolution of sedimentary basins over geologic time.

Global Drainage Patterns to Modern Terrestrial Sedimentary Basins and its Influence on Large River Systems

NASA Astrophysics Data System (ADS)

Nyberg, B.; Helland-Hansen, W.

2017-12-01

Long-term preservation of alluvial sediments is dependent on the hydrological processes that deposit sediments solely within an area that has available accomodation space and net subsidence know as a sedimentary basin. An understanding of the river processes contributing to terrestrial sedimentary basins is essential to fundamentally constrain and quantify controls on the modern terrestrial sink. Furthermore, the terrestrial source to sink controls place constraints on the entire coastal, shelf and deep marine sediment routing systems. In addition, the geographical importance of modern terrestrial sedimentary basins for agriculture and human settlements has resulted in significant upstream anthropogenic catchment modification for irrigation and energy needs. Yet to our knowledge, a global catchment model depicting the drainage patterns to modern terrestrial sedimentary basins has previously not been established that may be used to address these challenging issues. Here we present a new database of 180,737 global catchments that show the surface drainage patterns to modern terrestrial sedimentary basins. This is achieved by using high resolution river networks derived from digital elevation models in relation to newly acquired maps on global modern sedimentary basins to identify terrestrial sinks. The results show that active tectonic regimes are typically characterized by larger terrestrial sedimentary basins, numerous smaller source catchments and a high source to sink relief ratio. To the contrary passive margins drain catchments to smaller terrestrial sedimentary basins, are composed of fewer source catchments that are relatively larger and a lower source to sink relief ratio. The different geomorphological characteristics of source catchments by tectonic setting influence the spatial and temporal patterns of fluvial architecture within sedimentary basins and the anthropogenic methods of exploiting those rivers. The new digital database resource is aimed to help

Prediction of hydrocarbons in sedimentary basins

USGS Publications Warehouse

Harff, J.E.; Davis, J.C.; Eiserbeck, W.

1993-01-01

To estimate the undiscovered hydrocarbon potential of sedimentary basins, quantitative play assessments specific for each location in a region may be obtained using geostatistical methods combined with the theory of classification of geological objects, a methodology referred to as regionalization. The technique relies on process modeling and measured borehole data as well as probabilistic methods to exploit the relationship between geology (the "predictor") and known hydrocarbon productivity (the "target") to define prospective stratigraphic intervals within a basin. It is demonstrated in case studies from the oil-producing region of the western Kansas Pennsylvanian Shelf and the gas-bearing Rotliegend sediments of the Northeast German Basin. ?? 1993 International Association for Mathematical Geology.

An evaluation of multiband photography for rock discrimination. [sedimentary rocks of Front Range, Colorado

NASA Technical Reports Server (NTRS)

Lee, K. (Principal Investigator); Raines, G. L.

1974-01-01

The author has identified the following significant results. With the advent of ERTS and Skylab satellites, multiband imagery and photography have become readily available to geologists. The ability of multiband photography to discriminate sedimentary rocks was examined. More than 8600 in situ measurements of band reflectance of the sedimentary rocks of the Front Range, Colorado, were acquired. Statistical analysis of these measurements showed that: (1) measurements from one site can be used at another site 100 miles away; (2) there is basically only one spectral reflectance curve for these rocks, with constant amplitude differences between the curves; and (3) the natural variation is so large that at least 150 measurements per formation are required to select best filters. These conclusions are supported by subjective tests with aerial multiband photography. The designed multiband photography concept for rock discrimination is not a practical method of improving sedimentary rock discrimination capabilities.

Arctic Ocean Sedimentary Cover Structure, Based on 2D MCS Seismic Data.

NASA Astrophysics Data System (ADS)

Kireev, A.; Kaminsky, V.; Poselov, V.; Poselova, L.; Kaminsky, D.

2016-12-01

In 2016 the Russian Federation has submitted its partial revised Submission for establishment of the OLCS (outer limit of the continental shelf) in the Arctic Ocean. In order to prepare the Submission, in 2005 - 2014 the Russian organizations carried out a wide range of geological and geophysical studies, so that today over 23000 km of MCS lines and 4000 km of deep seismic sounding are accomplished. For correct time/depth conversion of seismic sections obtained with a short streamer in difficult ice conditions wide-angle reflection/refraction seismic sonobuoy soundings were used. All of these seismic data were used to refine the stratigraphy model, to identify sedimentary complexes and to estimate the total thickness of the sedimentary cover. Seismic stratigraphy model was successively determined for the Cenozoic and pre-Cenozoic parts of the sedimentary section and was based on correlation of the Russian MCS data and seismic data documented by boreholes. Cenozoic part of the sedimentary cover is based on correlation of the Russian MCS data and AWI91090 section calibrated by ACEX-2004 boreholes on the Lomonosov Ridge for Amerasia basin and by correlation of onlap contacts onto oceanic crust with defined magnetic anomalies for Eurasia basin. Pre-Cenozoic part of the sedimentary cover is based on tracing major unconformities from boreholes on the Chukchi shelf (Crackerjack, Klondike, Popcorn) to the North-Chuckchi Trough and further to the Mendeleev Rise as well as to the Vilkitsky Trough and the adjacent Podvodnikov Basin. Six main unconformities were traced: regional unconformity (RU), Eocene unconformity (EoU) (for Eurasia basin only), post-Campanian unconformity (pCU), Brookian (BU - base of the Lower Brookian unit), Lower Cretaceous (LCU) and Jurassic (JU - top of the Upper Ellesmerian unit). The final step in our research was to generalize all seismic surveys (top of acoustic basement correlation data) and bathymetry data in the sedimentary cover thickness map

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

NASA Astrophysics Data System (ADS)

Mangold, N.; Schmidt, M. E.; Fisk, M. R.; Forni, O.; McLennan, S. M.; Ming, D. W.; Sautter, V.; Sumner, D.; Williams, A. J.; Clegg, S. M.; Cousin, A.; Gasnault, O.; Gellert, R.; Grotzinger, J. P.; Wiens, R. C.

2017-03-01

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. To facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematic classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary rocks (e

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

DOE PAGES

Mangold, Nicolas; Schmidt, Mariek E.; Fisk, Martin R.; ...

2016-11-05

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. Here, to facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematicmore » classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mangold, Nicolas; Schmidt, Mariek E.; Fisk, Martin R.

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. Here, to facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematicmore » classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary

Polygon/Cracked Sedimentary Rock

NASA Technical Reports Server (NTRS)

2004-01-01

4 December 2004 Exposures of sedimentary rock are quite common on the surface of Mars. Less common, but found in many craters in the regions north and northwest of the giant basin, Hellas, are sedimentary rocks with distinct polygonal cracks in them. This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows an example from the floor of an unnamed crater near 21.0oS, 311.9oW. Such cracks might have formed by desiccation as an ancient lake dried up, or they might be related to ground ice freeze/thaw cycles or some other stresses placed on the original sediment or the rock after it became lithified. The 300 meter scale bar is about 328 yards long. The scene is illuminated by sunlight from the upper left.

Subcritical water extraction of organic matter from sedimentary rocks.

PubMed

Luong, Duy; Sephton, Mark A; Watson, Jonathan S

2015-06-16

replacement for conventional solvent extraction of sedimentary rocks, but can also be used for any organic matter containing mineral matrix, including soils and recent sediments, and has the added benefit of tailored extraction for analytes of specific polarities. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Sedimentary Cover of the Central Arctic

NASA Astrophysics Data System (ADS)

Kireev, Artem; Poselov, Viktor; Butsenko, Viktor; Smirnov, Oleg

2017-04-01

Partial revised Submission of the Russian Federation for establishment of the OLCS (outer limit of the continental shelf) in the Arctic Ocean is made to include in the extended continental shelf of the Russian Federation, in accordance with article 76 of the Convention, the seabed and its subsoil in the central Arctic Ocean which is natural prolongation of the Russian land territory. To submit partial revised Submission in 2016, in 2005 - 2014 the Russian organizations carried out a wide range of geophysical studies, so that today over 23000 km of MCS lines, over hundreds of wide-angle reflection/refraction seismic sonobuoy soundings and 4000 km of deep seismic sounding are accomplished. All of these MCS and seismic soundings data were used to establish the seismic stratigraphy model of the Arctic region. Stratigraphy model of the sedimentary cover was successively determined for the Cenozoic and pre-Cenozoic parts of the section and was based on correlation of the Russian MCS data and seismic data documented by existing boreholes. Interpretation of the Cenozoic part of the sedimentary cover was based on correlation of the Russian MCS data and AWI91090 section calibrated by ACEX-2004 boreholes on the Lomonosov Ridge for Amerasia basin and by correlation of onlap contacts onto oceanic crust with defined magnetic anomalies for Eurasia basin, while interpretation of the Pre-Cenozoic part of the sedimentary cover was based on correlation with MCS and boreholes data from Chukchi sea shelf. Six main unconformities were traced: regional unconformity (RU), Eocene unconformity (EoU) (for Eurasia basin only), post-Campanian unconformity (pCU), Brookian (BU - base of the Lower Brookian unit), Lower Cretaceous (LCU) and Jurassic (JU - top of the Upper Ellesmerian unit). The final step in our research was to estimate the total thickness of the sedimentary cover of the Arctic Ocean and adjacent Eurasian shelf using top of acoustic basement correlation data and bathymetry data

Imaging the Moho beneath Sedimentary Basins: A Comparative Study of Virtual Deep Seismic Sounding (VDSS) and P Wave Receiver Functions (PRF)

NASA Astrophysics Data System (ADS)

Liu, T.; Klemperer, S. L.; Yu, C.; Ning, J.

2017-12-01

In the past decades, P wave receiver functions (PRF) have been routinely used to image the Moho, although it is well known that PRFs are susceptible to contamination from sedimentary multiples. Recently, Virtual Deep Seismic Sounding (VDSS) emerged as a novel method to image the Moho. However, despite successful applications of VDSS on multiple datasets from different areas, how sedimentary basins affect the waveforms of post-critical SsPmp, the Moho reflection phase used in VDSS, is not widely understood. Here, motivated by a dataset collected in the Ordos plateau, which shows distinct effects of sedimentary basins on SsPmp and Pms waveforms, we use synthetic seismograms to study the effects of sedimentary basins on SsPmp and Pms, the phases used in VDSS and PRF respectively. The results show that when the sedimentary thickness is on the same order of magnitude as the dominant wavelength of the incident S wave, SsPmp amplitude decreases significantly with S velocity of the sedimentary layer, whereas increasing sedimentary thickness has little effect in SsPmp amplitude. Our explanation is that the low S velocity layer at the virtual source reduces the incident angle of S wave at the free surface, thus decreases the S-to-P reflection coefficient at the virtual source. In addition, transmission loss associated with the bottom of sedimentary basins also contributes to reducing SsPmp amplitude. This explains not only our observations from the Ordos plateau, but also observations from other areas where post-critical SsPmp is expected to be observable, but instead is too weak to be identified. As for Pms, we observe that increasing sedimentary thickness and decreasing sedimentary velocities both can cause interference between sedimentary multiples and Pms, rendering the Moho depths inferred from Pms arrival times unreliable. The reason is that although Pms amplitude does not vary with sedimentary thickness or velocities, as sedimentary velocities decrease and thickness

Calculation of thermal conductivity, thermal diffusivity and specific heat capacity of sedimentary rocks using petrophysical well logs

NASA Astrophysics Data System (ADS)

Fuchs, Sven; Balling, Niels; Förster, Andrea

2015-12-01

In this study, equations are developed that predict for synthetic sedimentary rocks (clastics, carbonates and evapourates) thermal properties comprising thermal conductivity, specific heat capacity and thermal diffusivity. The rock groups are composed of mineral assemblages with variable contents of 15 major rock-forming minerals and porosities of 0-30 per cent. Petrophysical properties and their well-logging-tool-characteristic readings were assigned to these rock-forming minerals and to pore-filling fluids. Relationships are explored between each thermal property and other petrophysical properties (density, sonic interval transit time, hydrogen index, volume fraction of shale and photoelectric absorption index) using multivariate statistics. The application of these relations allows computing continuous borehole profiles for each rock thermal property. The uncertainties in the prediction of each property vary depending on the selected well-log combination. Best prediction is in the range of 2-8 per cent for the specific heat capacity, of 5-10 per cent for the thermal conductivity, and of 8-15 for the thermal diffusivity, respectively. Well-log derived thermal conductivity is validated by laboratory data measured on cores from deep boreholes of the Danish Basin, the North German Basin, and the Molasse Basin. Additional validation of thermal conductivity was performed by comparing predicted and measured temperature logs. The maximum deviation between these logs is <3 °C. The thermal-conductivity calculation allowed an evaluation of the depth range in which the palaeoclimatic effect on the subsurface temperature field can be observed in the North German Basin. This effect reduces the surface heat-flow density by 25 mW m-2.

Eolian Dust and the Origin of Sedimentary Chert

USGS Publications Warehouse

Cecil, C. Blaine

2004-01-01

This paper proposes an alternative model for the primary source of silica contained in bedded sedimentary chert. The proposed model is derived from three principal observations as follows: (1) eolian processes in warm-arid climates produce copious amounts of highly reactive fine-grained quartz particles (dust), (2) eolian processes in warm-arid climates export enormous quantities of quartzose dust to marine environments, and (3) bedded sedimentary cherts generally occur in marine strata that were deposited in warm-arid paleoclimates where dust was a potential source of silica. An empirical integration of these observations suggests that eolian dust best explains both the primary and predominant source of silica for most bedded sedimentary cherts.

Identifying and Interpreting Stratification in Sedimentary Rocks on Mars: Insight from Rover and Orbital Observations and Terrestrial Field Analogs

NASA Astrophysics Data System (ADS)

Edgar, Lauren A.

Sedimentary rocks on Mars provide insight into past aqueous and atmospheric processes, climate regimes, and potential habitability. The stratigraphic architecture of sedimentary rocks on Mars is similar to that of Earth, indicating that the processes that govern deposition and erosion on Mars can be reasonably inferred through reference to analogous terrestrial systems. This dissertation aims to understand Martian surface processes through the use of (1) ground-based observations from the Mars Exploration Rovers, (2) orbital data from the High Resolution Imaging Science Experiment onboard the Mars Reconnaissance Orbiter, and (3) the use of terrestrial field analogs to understand bedforms and sediment transport on Mars. Chapters 1 and 2 trace the history of aqueous activity at Meridiani Planum, through the reconstruction of eolian bedforms at Victoria crater, and the identification of a potential mudstone facies at Santa Maria crater. Chapter 3 uses Terrestrial Laser Scanning to study cross-bedding in pyroclastic surge deposits on Earth in order to understand sediment transport in these events and to establish criteria for their identification on Mars. The final chapter analyzes stratal geometries in the Martian North Polar Layered Deposits using tools for sequence stratigraphic analysis, to better constrain past surface processes and past climate conditions on Mars.

Potential Cement Phases in Sedimentary Rocks Drilled by Curiosity at Gale Crater, Mars

NASA Technical Reports Server (NTRS)

Rampe, E. B.; Morris, R. V.; Bish, D. L.; Chipera, S. J.; Ming, D. W.; Blake, D. F.; Vaniman, D. T.; Bristow, T. F.; Cavanagh, P.; Farmer, J. D.;

In-situ Micro-structural Studies of Gas Hydrate Formation in Sedimentary Matrices

NASA Astrophysics Data System (ADS)

Kuhs, Werner F.; Chaouachi, Marwen; Falenty, Andrzej; Sell, Kathleen; Schwarz, Jens-Oliver; Wolf, Martin; Enzmann, Frieder; Kersten, Michael; Haberthür, David

2015-04-01

The formation process of gas hydrates in sedimentary matrices is of crucial importance for the physical and transport properties of the resulting aggregates. This process has never been observed in-situ with sub-micron resolution. Here, we report on synchrotron-based micro-tomographic studies by which the nucleation and growth processes of gas hydrate were observed in different sedimentary matrices (natural quartz, glass beds with different surface properties, with and without admixtures of kaolinite and montmorillonite) at varying water saturation. The nucleation sites can be easily identified and the growth pattern is clearly established. In under-saturated sediments the nucleation starts at the water-gas interface and proceeds from there to form predominantly isometric single crystals of 10-20μm size. Using a newly developed synchrotron-based method we have determined the crystallite size distributions (CSD) of the gas hydrate in the sedimentary matrix confirming in a quantitative and statistically relevant manner the impressions from the tomographic reconstructions. It is noteworthy that the CSDs from synthetic hydrates are distinctly smaller than those of natural gas hydrates [1], which suggest that coarsening processes take place in the sedimentary matrix after the initial hydrate formation. Understanding the processes of formation and coarsening may eventually permit the determination of the age of gas hydrates in sedimentary matrices [2], which are largely unknown at present. Furthermore, the full micro-structural picture and its evolution will enable quantitative digital rock physics modeling to reveal poroelastic properties and in this way to support the exploration and exploitation of gas hydrate resources in the future. [1] Klapp S.A., Hemes S., Klein H., Bohrmann G., McDonald I., Kuhs W.F. Grain size measurements of natural gas hydrates. Marine Geology 2010; 274(1-4):85-94. [2] Klapp S.A., Klein H, Kuhs W.F. First determination of gas hydrate

Characteristics of depositional environment and evolution of Upper Cretaceous Mishrif Formation, Halfaya Oil field, Iraq based on sedimentary microfacies analysis

NASA Astrophysics Data System (ADS)

Zhong, Yuan; Zhou, Lu; Tan, Xiucheng; Guo, Rui; Zhao, Limin; Li, Fei; Jin, Zhimin; Chen, Yantao

2018-04-01

As one of the most important carbonate targets in the Middle East, Upper Cretaceous Mishrif Formation has been highlighted for a long time. Although consensus has been reached on the overall sedimentary background, disputes still exist in understanding the sedimentary environment changes among sub-regions due to relatively limited research, rare outcrop, and incomplete drilled core, which hinders the analysis on sedimentary environment and thus the horizontal and vertical correlation. In this study, taking the Halfaya Oil Field as an example, the sedimentary microfacies analysis method was introduced to comprehensively characterize the cored interval of Mishrif Formation, including Single Layers MC1-1 to MA2. A total of 11 sedimentary microfacies are identified through system identification of sedimentary microfacies and environmental analysis, with reference to the standard microfacies classification in the rimmed carbonate platform. Then three kinds of environments are identified through microfacies assemblage analysis, namely restricted platform, open platform, and platform margin. Systematic analyses indicate that the deposits are mainly developed in the open platform and platform margin. Meanwhile, rock-electricity interpretation model is established according to the electricity response to cored intervals, and is then employed to interpret the uncored intervals, which finally helps build the sedimentary evolution pattern through horizontal and vertical correlation. It is proposed that the Single Layers MC1-1 to MB2-3 were deposited in the open platform featured by low water level, including sub-environments of low-energy shoal within platform and inter-shoal sea; Single Layers MB2-2 to MB1-2B were deposited in the open platform and platform margin, including sub-environments of high-energy shoal on the platform margin, low-energy shoal within platform, inter-shoal sea, and open sea; and Single Layers MB1-2A to MA2 were again deposited in the open platform

Seasonal variations and sources of sedimentary organic carbon in Tokyo Bay.

PubMed

Kubo, Atsushi; Kanda, Jota

2017-01-30

Total organic carbon (TOC), total nitrogen (TN) contents, their stable C and N isotope ratio (δ 13 C and δ 15 N), and chlorophyll a ([Chl a] sed ) of surface sediments were investigated monthly to identify the seasonal variations and sources of organic matter in Tokyo Bay. The sedimentary TOC (TOC sed ) and TN (TN sed ) contents, and the sedimentary δ 13 C and δ 15 N (δ 13 C sed and δ 15 N sed ) values were higher in summer than other seasons. The seasonal variations were controlled by high primary production in the water column and hypoxic water in the bottom water during summer. The fraction of terrestrial and marine derived organic matter was estimated by Bayesian mixing model using stable isotope data and TOC/TN ratio. Surface sediments in Tokyo Bay are dominated by marine derived organic matter, which accounts for about 69±5% of TOC sed . Copyright © 2016 Elsevier Ltd. All rights reserved.

Chemistry of decomposition of freshwater wetland sedimentary organic material during ramped pyrolysis

NASA Astrophysics Data System (ADS)

Williams, E. K.; Rosenheim, B. E.

2011-12-01

Ramped pyrolysis methodology, such as that used in the programmed-temperature pyrolysis/combustion system (PTP/CS), improves radiocarbon analysis of geologic materials devoid of authigenic carbonate compounds and with low concentrations of extractable authochthonous organic molecules. The approach has improved sediment chronology in organic-rich sediments proximal to Antarctic ice shelves (Rosenheim et al., 2008) and constrained the carbon sequestration potential of suspended sediments in the lower Mississippi River (Roe et al., in review). Although ramped pyrolysis allows for separation of sedimentary organic material based upon relative reactivity, chemical information (i.e. chemical composition of pyrolysis products) is lost during the in-line combustion of pyrolysis products. A first order approximation of ramped pyrolysis/combustion system CO2 evolution, employing a simple Gaussian decomposition routine, has been useful (Rosenheim et al., 2008), but improvements may be possible. First, without prior compound-specific extractions, the molecular composition of sedimentary organic matter is unknown and/or unidentifiable. Second, even if determined as constituents of sedimentary organic material, many organic compounds have unknown or variable decomposition temperatures. Third, mixtures of organic compounds may result in significant chemistry within the pyrolysis reactor, prior to introduction of oxygen along the flow path. Gaussian decomposition of the reaction rate may be too simple to fully explain the combination of these factors. To relate both the radiocarbon age over different temperature intervals and the pyrolysis reaction thermograph (temperature (°C) vs. CO2 evolved (μmol)) obtained from PTP/CS to chemical composition of sedimentary organic material, we present a modeling framework developed based upon the ramped pyrolysis decomposition of simple mixtures of organic compounds (i.e. cellulose, lignin, plant fatty acids, etc.) often found in sedimentary

Schiaparelli Sedimentary Rocks

NASA Technical Reports Server (NTRS)

2003-01-01

MGS MOC Release No. MOC2-403, 26 June 2003

Some of the most important high resolution imaging results of the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) experiment center on discoveries about the presence and nature of the sedimentary rock record on Mars. This old meteor impact crater in northwestern Schiaparelli Basin exhibits a spectacular view of layered, sedimentary rock. The 2.3 kilometer (1.4 miles) wide crater may have once been completely filled with sediment; the material was later eroded to its present form. Dozens of layers of similar thickness and physical properties are now expressed in a wedding cake-like stack in the middle of the crater. Sunlight illuminating the scene from the left shows that the circle, or mesa top, at the middle of the crater stands higher than the other stair-stepped layers. The uniform physical properties and bedding of these layers might indicate that they were originally deposited in a lake (it is possible that the crater was at the bottom of a much larger lake, filling Schiaparelli Basin); alternatively, the layers were deposited by settling out of the atmosphere in a dry environment. This picture was acquired on June 3, 2003, and is located near 0.9oS, 346.2oW.

Assessment of pore pressures and specific storage within sedimentary strata overlying underground mines

NASA Astrophysics Data System (ADS)

Timms, W.; David, K.; Barbour, L. S.

2016-12-01

Realistic values of specific storage (Ss) for groundwater systems are important to determine the spatial extent and timing of c pore pressure changes when the groundwater system is stressed. However, numerical groundwater models of underground excavations typically assume constant literature values of Ss. One part of our research program utilised high frequency pore pressure data to evaluate variability and changes in Ss within sedimentary strata overlying a longwall coal mine. Pore pressure data from a vertical series of 6 vibrating wire piezometers (50 to 278 m depth) recording at hourly intervals were compared with barometric pressure data over a period of several years, including data before and during mining. The site was located near the centre of a longwall panel that extracted 3 m of coal at a depth of 330 m. The data was processed to calculate loading efficiency and Ss values by multi-method analyses of barometric and earth tide responses. In situ Ss results varied over one to two orders of magnitude and indicated that Ss changed before and after excavation of underlying coal seams. The vertical leakage of groundwater within the constrained zone ( 10 to 150 m depth) was found to be limited, although some degree of vertical hydraulic connectivity was observed. Depressurization was evident in the fractured zone directly overlying the coal seam, and Ss changes at 250 m depth indicated this confined aquifer may have become unconfined. Our results demonstrate that high frequency pore pressure data can provide realistic Ss values. In situ Ss values were an order of magnitude lower than Ss measured by geomechnical tests of cores, and were significantly different to textbook values set in most local groundwater models. The timing and extent of groundwater level drawdown predicted by models may therefore be underestimated. We have shown, for the first time, that variability of Ss can be significant, and that these changes can provide important insights into how

Sedimentary Petrography and Facies Analysis at the Shaler Outcrop, Gale Crater, Mars

NASA Astrophysics Data System (ADS)

Edgar, L. A.; Gupta, S.; Rubin, D. M.; Lewis, K. W.; Kocurek, G.; Anderson, R. B.; Bell, J. F.; Dromart, G.; Edgett, K. S.; Grotzinger, J. P.; Hardgrove, C. J.; Kah, L. C.; Leveille, R. J.; Malin, M.; Mangold, N.; Milliken, R.; Minitti, M. E.; Rice, M. S.; Rowland, S. K.; Schieber, J.; Stack, K.; Sumner, D. Y.; Team, M.

2013-12-01

The Mars Science Laboratory Curiosity rover has recently completed an investigation of a large fluvial deposit known informally as the Shaler outcrop (~1 m thick). Curiosity acquired data at the Shaler outcrop during sols 120-121 and 309-324. The Shaler outcrop is comprised of cross-bedded coarse-grained sandstones and recessive finer-grained intervals. Shaler is distinguished from the surrounding units by the presence of resistant beds exhibiting decimeter scale trough cross-bedding. Observations using the Mast Cameras, Mars Hand Lens Imager (MAHLI) and ChemCam Remote Micro Imager (RMI) enable the recognition of several distinct facies. MAHLI images were acquired on five distinct rock targets, and RMI images were acquired at 33 different locations. On the basis of grain size, erosional resistance, color, and sedimentary structures, we identify four facies: 1) resistant cross-stratified facies, 2) smooth, fine-grained cross-stratified facies, 3) dark gray, pitted facies, and 4) recessive, vertically fractured facies. Panoramic Mastcam observations reveal facies distributions and associations, and show cross-bedded facies that are similar to those observed at the Rocknest and Bathurst_Inlet locations. MAHLI and RMI images are used to determine the grain size, sorting, rounding and sedimentary fabric of the different facies. High-resolution images also reveal small-scale diagenetic features and sedimentary structures that are used to reconstruct the depositional and diagenetic history.

STABLE CARBON ISOTOPE EVIDENCE FOR COUPLING BETWEEN SEDIMENTARY BACTERIA AND SEAGRASSES IN A SUB-TROPICAL LAGOON

EPA Science Inventory

We measured stable carbon isotope ratios (d13C) in phospholipid fatty acids (PLFAs) to identify the primary carbon source utilized by sedimentary bacteria in Lower Laguna Madre, Texas, which is a seagrass dominated lagoon. Comparisons were made between three differing habitat ty...

Geologic Criteria for the Assessment of Sedimentary Exhalative (Sedex) Zn-Pb-Ag Deposits

USGS Publications Warehouse

Emsbo, Poul

2009-01-01

Sedex deposits account for more than 50 percent of the world's zinc and lead reserves and furnish more than 25 percent of the world's production of these two metals. This report draws on previous syntheses as well as on topical studies of deposits in sedex basins to determine the characteristics and processes that produced sedex deposits. This analysis also uses studies of the tectonic, sedimentary, and fluid evolution of modern and ancient sedimentary basins and mass balance constraints to identify the hydrothermal processes that are required to produce sedex deposits. This report demonstrates how a genetic model can be translated into geologic criteria that can be used in the U.S. Geological Survey National Assessments for sedex zinc-lead-silver deposits to define permissive tracts, assess the relative prospectivity of permissive tracts, and map favorability within permissive tracts.

Pore water colloid properties in argillaceous sedimentary rocks.

PubMed

Degueldre, Claude; Cloet, Veerle

2016-11-01

The focus of this work is to evaluate the colloid nature, concentration and size distribution in the pore water of Opalinus Clay and other sedimentary host rocks identified for a potential radioactive waste repository in Switzerland. Because colloids could not be measured in representative undisturbed porewater of these host rocks, predictive modelling based on data from field and laboratory studies is applied. This approach allowed estimating the nature, concentration and size distributions of the colloids in the pore water of these host rocks. As a result of field campaigns, groundwater colloid concentrations are investigated on the basis of their size distribution quantified experimentally using single particle counting techniques. The colloid properties are estimated considering data gained from analogue hydrogeochemical systems ranging from mylonite features in crystalline fissures to sedimentary formations. The colloid concentrations were analysed as a function of the alkaline and alkaline earth element concentrations. Laboratory batch results on clay colloid generation from compacted pellets in quasi-stagnant water are also reported. Experiments with colloids in batch containers indicate that the size distribution of a colloidal suspension evolves toward a common particle size distribution independently of initial conditions. The final suspension size distribution was found to be a function of the attachment factor of the colloids. Finally, calculations were performed using a novel colloid distribution model based on colloid generation, aggregation and sedimentation rates to predict under in-situ conditions what makes colloid concentrations and size distributions batch- or fracture-size dependent. The data presented so far are compared with the field and laboratory data. The colloid occurrence, stability and mobility have been evaluated for the water of the considered potential host rocks. In the pore water of the considered sedimentary host rocks, the clay

Research into Surface Wave Phenomena in Sedimentary Basins.

DTIC Science & Technology

1981-12-31

150 km of the southerly extension of the Overthrust Belt, 350 km of the Green River Basin paralleling the Uinta Mountains and 150 km across the Front...WEIDLINGER ASSOCIATES O300 SAND HiLL ROAD BUILDING 4, SUITE 245 MENLO PARK, CALIFORNIA 9462 RESEARCH INTO SURFACE WAVE PHENOMENA IN SEDIMENTARY BASINS BY...PARK, CALIFORNIA 94025 ! I RESEARCH INTO SURFACE WAVE PHENOMENA IN SEDIMENTARY BASINS I Dy G.L. Wojcik J. Isenberg F. Ma E. Richardson Prepared for

Late Pleistocene dune-sourced alluvial fans in coastal settings: Sedimentary facies and related processes (Mallorca, Western Mediterranean)

NASA Astrophysics Data System (ADS)

Pomar, F.; del Valle, L.; Fornós, J. J.; Gómez-Pujol, L.

2018-05-01

Aeolian-alluvial sedimentary interaction results in the formation of deposits characterized by typical alluvial sedimentary structures, but is composed of conspicuous amounts of aeolian sediments. The literature on this topic is limited and most works relate more with continental aeolian dunes or fluvial dune interference with fan bodies. Furthermore, there is a lack of examples of aeolian-alluvial sedimentary interference in coastal settings. In the western Mediterranean, there are many Pleistocene alluvial fan deposits built up partly by sediment originating from coastal dunes dismantled by alluvial streams. Very often, these deposits show a continuous sedimentary sequence through which we can derive the contribution and predominance of coastal, alluvial-colluvial and aeolian processes and their controls on landscape formation. This is an outstanding feature within coastal systems since it shows marine sediments reworked and integrated within coastal dune fields by aeolian transport, and the latter built up into alluvial fan bodies. In this sense, aeolian-alluvial interaction is the geomorphic-sedimentary expression of the coexistence and overlapping of alluvial and aeolian environments resulting in deposits sharing sedimentary features from both environments. The aim of this paper is to unravel the contribution of coastal dunes in the construction of alluvial fans bodies and identify the main sedimentary facies that constitute these deposits, as well as their climatic controls. For this reason, Es Caló fan (northern Mallorca) has been selected due to its well-exposed deposits exhibiting the alternation of aeolian, alluvial and colluvial deposits. Sedimentological and stratigraphic analyses based on 33 logs and complementary analyses demonstrate that most of the facies constituting the fan body are made up completely of marine bioclastic sands. These deposits record an alluvial fan sedimentary environment characterized by sediments inputs that do not proceed

The integration of gravity, magnetic and seismic data in delineating the sedimentary basins of northern Sinai and deducing their structural controls

NASA Astrophysics Data System (ADS)

Selim, El Sayed Ibrahim

2016-01-01

The Sinai Peninsula is a part of the Sinai sub-plate that located between the southeast Nubian-Arabian shield and the southeastern Mediterranean northward. The main objectives of this investigation are to deduce the main sedimentary basin and its subdivisions, identify the subsurface structural framework that affects the study area and determine the thickness of sedimentary cover of the basement surface. The total intensity magnetic map, Bouguer gravity map and seismic data were used to achieve the study aims. Structural interpretation of the gravity and magnetic data were done by applying advanced processing techniques. These techniques include; Reduce to the pole (RTP), Power spectrum, Tile derivative and Analytical Signal techniques were applied on gravity and magnetic data. Two dimensional gravity and magnetic modeling and interpretation of seismic sections were done to determine the thickness of sedimentary cover of the study area. The integration of our interpretation suggests that, the northern Sinai area consists of elongated troughs that contain many high structural trends. Four major structural trends have been identified, that, reflecting the influence of district regional tectonic movements. These trends are: (1) NE-SW trend; (2) NNW-SSE trend; (3) ENE-WSW trend and (4) WNW-ESE trend. There are also many minor trends, E-W, NW-SE and N-S structural trends. The main sedimentary basin of North Sinai is divided into four sub-basins; (1) Northern Maghara; (2) Northeastern Sinai; (3) Northwestern Sinai and (4) Central Sinai basin. The sedimentary cover ranges between 2 km and 7 km in the northern part of the study area.

Geochemistry of Fine-grained Sediments and Sedimentary Rocks

NASA Astrophysics Data System (ADS)

Sageman, B. B.; Lyons, T. W.

2003-12-01

The nature of detrital sedimentary (siliciclastic) rocks is determined by geological processes that occur in the four main Earth surface environments encountered over the sediment's history from source to final sink: (i) the site of sediment production (provenance), where interactions among bedrock geology, tectonic uplift, and climate control weathering and erosion processes; (ii) the transport path, where the medium of transport, gradient, and distance to the depositional basin may modify the texture and composition of weathered material; (iii) the site of deposition, where a suite of physical, chemical, and biological processes control the nature of sediment accumulation and early burial modification; and (iv) the conditions of later burial, where diagenetic processes may further alter the texture and composition of buried sediments. Many of these geological processes leave characteristic geochemical signatures, making detrital sedimentary rocks one of the most important archives of geochemical data available for reconstructions of ancient Earth surface environments. Although documentation of geochemical data has long been a part of the study of sedimentation (e.g., Twenhofel, 1926, 1950; Pettijohn, 1949; Trask, 1955), the development and application of geochemical methods specific to sedimentary geological problems blossomed in the period following the Second World War ( Degens, 1965; Garrels and Mackenzie, 1971) and culminated in recent years, as reflected by the publication of various texts on marine geochemistry (e.g., Chester, 1990, 2000), biogeochemistry (e.g., Schlesinger, 1991; Libes, 1992), and organic geochemistry (e.g., Tissot and Welte, 1984; Engel and Macko, 1993).Coincident with the growth of these subdisciplines a new focus has emerged in the geological sciences broadly represented under the title of "Earth System Science" (e.g., Kump et al., 1999). Geochemistry has played the central role in this revolution (e.g., Berner, 1980; Garrels and Lerman

Microbial methane formation in deep aquifers of a coal-bearing sedimentary basin, Germany

PubMed Central

Gründger, Friederike; Jiménez, Núria; Thielemann, Thomas; Straaten, Nontje; Lüders, Tillmann; Richnow, Hans-Hermann; Krüger, Martin

2015-01-01

Coal-bearing sediments are major reservoirs of organic matter potentially available for methanogenic subsurface microbial communities. In this study the specific microbial community inside lignite-bearing sedimentary basin in Germany and its contribution to methanogenic hydrocarbon degradation processes was investigated. The stable isotope signature of methane measured in groundwater and coal-rich sediment samples indicated methanogenic activity. Analysis of 16S rRNA gene sequences showed the presence of methanogenic Archaea, predominantly belonging to the orders Methanosarcinales and Methanomicrobiales, capable of acetoclastic or hydrogenotrophic methanogenesis. Furthermore, we identified fermenting, sulfate-, nitrate-, and metal-reducing, or acetogenic Bacteria clustering within the phyla Proteobacteria, complemented by members of the classes Actinobacteria, and Clostridia. The indigenous microbial communities found in the groundwater as well as in the coal-rich sediments are able to degrade coal-derived organic components and to produce methane as the final product. Lignite-bearing sediments may be an important nutrient and energy source influencing larger compartments via groundwater transport. PMID:25852663

Sedimentary Geochemistry of Martian Samples from the Pathfinder Mission

NASA Technical Reports Server (NTRS)

McLennan, Scott M.

2001-01-01

The purpose of this research project was to evaluate the APXS data collected on soils and rocks at the Pathfinder site in terms of sedimentary geochemistry. Below are described the major findings of this research: (1) An influential model to explain the chemical variation among Pathfinder soils and rocks is a two component mixing model where rocks of fairly uniform composition mix with soil of uniform composition; (2) The very strong positive correlation between MgO and SO, points to a control by a MgSO4 mineral however, spectroscopic data continue to suggest that Fe-sulfates, notably schwertmannite and jarosite, may be important components; (3) In an attempt to better understand the causes of complexities in mixing relationships, the possible influence of sedimentary transport has been evaluated; (4) Another aspect of this research has been to examine the possibility of sedimentary silica being a significant phase on Mars; and (5) On Earth, the geochemistry of sedimentary rocks has been used to constrain the chemical composition of the continental crust and an important part of this research was to evaluate this approach for Mars.

Areal distribution of sedimentary facies determined from seismic facies analysis and models of modern depositional systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seramur, K.C.; Powell, R.D.; Carpenter, P.J.

1988-02-01

Seismic facies analysis was applied to 3.5-kHz single-channel analog reflection profiles of the sediment fill within Muir Inlet, Glacier Bay, southeast Alaska. Nine sedimentary facies have been interpreted from seven seismic facies identified on the profiles. The interpretations are based on reflection characteristics and structural features of the seismic facies. The following reflection characteristics and structural features are used: reflector spacing, amplitude and continuity of reflections, internal reflection configurations, attitude of reflection terminations at a facies boundary, body geometry of a facies, and the architectural associations of seismic facies within each basin. The depositional systems are reconstructed by determining themore » paleotopography, bedding patterns, sedimentary facies, and modes of deposition within the basin. Muir Inlet is a recently deglaciated fjord for which successive glacier terminus positions and consequent rates of glacial retreat are known. In this environment the depositional processes and sediment characteristics vary with distance from a glacier terminus, such that during a retreat a record of these variations is preserved in the aggrading sediment fill. Sedimentary facies within the basins of lower Muir Inlet are correlated with observed depositional processes near the present glacier terminus in the upper inlet. The areal distribution of sedimentary facies within the basins is interpreted using the seismic facies architecture and inferences from known sediment characteristics proximal to present glacier termini.« less

Sedimentary Processes on Earth, Mars, Titan, and Venus

NASA Astrophysics Data System (ADS)

Grotzinger, J. P.; Hayes, A. G.; Lamb, M. P.; McLennan, S. M.

The production, transport and deposition of sediment occur to varying degrees on Earth, Mars, Venus, and Titan. These sedimentary processes are significantly influenced by climate that affects production of sediment in source regions (weathering), and the mode by which that sediment is transported (wind vs. water). Other, more geological, factors determine where sediments are deposited (topography and tectonics). Fluvial and marine processes dominate Earth both today and in its geologic past, aeolian processes dominate modern Mars although in its past fluvial processes also were important, Venus knows only aeolian processes, and Titan shows evidence of both fluvial and aeolian processes. Earth and Mars also feature vast deposits of sedimentary rocks, spanning billions of years of planetary history. These ancient rocks preserve the long-term record of the evolution of surface environments, including variations in climate state. On Mars, sedimentary rocks record the transition from wetter, neutral-pH weathering, to brine-dominated low-pH weathering, to its dry current state.

Factors influencing the biogeochemistry of sedimentary carbon and phosphorus in the Sacramento-San Joaquin Delta

USGS Publications Warehouse

Nilsen, E.B.; Delaney, M.L.

2005-01-01

This study characterizes organic carbon (Corganic) and phosphorus (P) geochemistry in surface sediments of the Sacramento-San Joaquin Delta, California. Sediment cores were collected from five sites on a sample transect from the edge of the San Francisco Bay eastward to the freshwater Consumnes River. The top 8 cm of each core were analyzed (in 1-cm intervals) for Corganic, four P fractions, and redox-sensitive trace metals (uranium and manganese). Sedimentary Corganic concentrations and Corganic:P ratios decreased, while reactive P concentrations increased moving inland in the Delta. The fraction of total P represented by organic P increased inland, while that of authigenic P was higher bayward than inland reflecting increased diagenetic alteration of organic matter toward the bayward end of the transect. The redox indicator metals are consistent with decreasing sedimentary suboxia inland. The distribution of P fractions and C:P ratios reflect the presence of relatively labile organic matter in upstream surface sediments. Sediment C and P geochemistry is influenced by site-specific particulate organic matter sources, the sorptive power of the sedimentary material present, physical forcing, and early diagenetic transformations presumably driven by Corganic oxidation. ?? 2005 Estuarine Research Federation.

Inferring Gene Family Histories in Yeast Identifies Lineage Specific Expansions

PubMed Central

Ames, Ryan M.; Money, Daniel; Lovell, Simon C.

2014-01-01

The complement of genes found in the genome is a balance between gene gain and gene loss. Knowledge of the specific genes that are gained and lost over evolutionary time allows an understanding of the evolution of biological functions. Here we use new evolutionary models to infer gene family histories across complete yeast genomes; these models allow us to estimate the relative genome-wide rates of gene birth, death, innovation and extinction (loss of an entire family) for the first time. We show that the rates of gene family evolution vary both between gene families and between species. We are also able to identify those families that have experienced rapid lineage specific expansion/contraction and show that these families are enriched for specific functions. Moreover, we find that families with specific functions are repeatedly expanded in multiple species, suggesting the presence of common adaptations and that these family expansions/contractions are not random. Additionally, we identify potential specialisations, unique to specific species, in the functions of lineage specific expanded families. These results suggest that an important mechanism in the evolution of genome content is the presence of lineage-specific gene family changes. PMID:24921666

Geoengineering Research for a Deep Underground Science and Engineering Laboratory in Sedimentary Rock

NASA Astrophysics Data System (ADS)

Mauldon, M.

2004-12-01

A process to identify world-class research for a Deep Underground Science and Engineering Laboratory (DUSEL) in the USA has been initiated by NSF. While allowing physicists to study, inter alia, dark matter and dark energy, this laboratory will create unprecedented opportunities for biologists to study deep life, geoscientists to study crustal processes and geoengineers to study the behavior of rock, fluids and underground cavities at depth, on time scales of decades. A substantial portion of the nation's future infrastructure is likely to be sited underground because of energy costs, urban crowding and vulnerability of critical surface facilities. Economic and safe development of subsurface space will require an improved ability to engineer the geologic environment. Because of the prevalence of sedimentary rock in the upper continental crust, much of this subterranean infrastructure will be hosted in sedimentary rock. Sedimentary rocks are fundamentally anisotropic due to lithology and bedding, and to discontinuities ranging from microcracks to faults. Fractures, faults and bedding planes create structural defects and hydraulic pathways over a wide range of scales. Through experimentation, observation and monitoring in a sedimentary rock DUSEL, in conjunction with high performance computational models and visualization tools, we will explore the mechanical and hydraulic characteristics of layered rock. DUSEL will permit long-term experiments on 100 m blocks of rock in situ, accessed via peripheral tunnels. Rock volumes will be loaded to failure and monitored for post-peak behavior. The response of large rock bodies to stress relief-driven, time-dependent strain will be monitored over decades. Large block experiments will be aimed at measurement of fluid flow and particle/colloid transport, in situ mining (incl. mining with microbes), remediation technologies, fracture enhancement for resource extraction and large scale long-term rock mass response to induced

Elemental geochemistry of sedimentary rocks at Yellowknife Bay, Gale crater, Mars.

PubMed

McLennan, S M; Anderson, R B; Bell, J F; Bridges, J C; Calef, F; Campbell, J L; Clark, B C; Clegg, S; Conrad, P; Cousin, A; Des Marais, D J; Dromart, G; Dyar, M D; Edgar, L A; Ehlmann, B L; Fabre, C; Forni, O; Gasnault, O; Gellert, R; Gordon, S; Grant, J A; Grotzinger, J P; Gupta, S; Herkenhoff, K E; Hurowitz, J A; King, P L; Le Mouélic, S; Leshin, L A; Léveillé, R; Lewis, K W; Mangold, N; Maurice, S; Ming, D W; Morris, R V; Nachon, M; Newsom, H E; Ollila, A M; Perrett, G M; Rice, M S; Schmidt, M E; Schwenzer, S P; Stack, K; Stolper, E M; Sumner, D Y; Treiman, A H; VanBommel, S; Vaniman, D T; Vasavada, A; Wiens, R C; Yingst, R A

2014-01-24

Sedimentary rocks examined by the Curiosity rover at Yellowknife Bay, Mars, were derived from sources that evolved from an approximately average martian crustal composition to one influenced by alkaline basalts. No evidence of chemical weathering is preserved, indicating arid, possibly cold, paleoclimates and rapid erosion and deposition. The absence of predicted geochemical variations indicates that magnetite and phyllosilicates formed by diagenesis under low-temperature, circumneutral pH, rock-dominated aqueous conditions. Analyses of diagenetic features (including concretions, raised ridges, and fractures) at high spatial resolution indicate that they are composed of iron- and halogen-rich components, magnesium-iron-chlorine-rich components, and hydrated calcium sulfates, respectively. Composition of a cross-cutting dike-like feature is consistent with sedimentary intrusion. The geochemistry of these sedimentary rocks provides further evidence for diverse depositional and diagenetic sedimentary environments during the early history of Mars.

Compound specific radiocarbon analyses to apportion sources of combustion products in sedimentary pyrogenic carbon deposits

NASA Astrophysics Data System (ADS)

Hanke, Ulrich M.; Schmidt, Michael W. I.; McIntyre, Cameron P.; Reddy, Christopher M.; Wacker, Lukas; Eglinton, Timothy I.

2016-04-01

Pyrogenic carbon (PyC) is a collective term for carbon-rich residues comprised of a continuum of products generated during biomass burning and fossil fuel combustion. PyC is a key component of the global carbon cycle due to its slow intrinsic decomposition rate and its ubiquity in the environment. It can originate from natural or anthropogenic vegetation fires, coal mining, energy production, industry and transport. Subsequently, PyC can be transported over long distances by wind and water and can eventually be buried in sediments. Information about the origin of PyC (biomass burning vs. fossil fuel combustion) deposited in estuarine sediments is scarce. We studied the highly anoxic estuarine sediments of the Pettaquamscutt River (Rhode Island, U.S.) in high temporal resolution over 250 years and found different combustion proxies reflect local and regional sources of PyC (Hanke et al. in review; Lima et al. 2003). The polycyclic aromatic hydrocarbons (PAH) originate from long-range atmospheric transport, whereas bulk PyC, detected as benzene polycarboxylic acids (BPCA), mainly stems from local catchment run-off. However, to unambiguously apportion PyC sources, we need additional information, such as compound specific radiocarbon (14C) measurements. We report 14C data for individual BPCA including error analysis and for combustion-related PAH. First results indicate that biomass burning is the main source of PyC deposits, with additional minor contributions from fossil fuel combustion. References Hanke U.M., T.I. Eglinton, A.L.L. Braun, C. Reddy, D.B. Wiedemeier, M.W.I. Schmidt. Decoupled sedimentary records of combustion: causes and implications. In review. Lima, A. L.; Eglinton, T. I.; Reddy, C. M., High-resolution record of pyrogenic polycyclic aromatic hydrocarbon deposition during the 20th century. ES&T, 2003, 37 (1), 53-61.

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam on board Curiosity: Potassic Sedimentary Rocks, Gale Crater

DOE PAGES

Le Deit, L.; Mangold, N.; Forni, O.; ...

2016-05-13

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. Furthermore, from ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K 2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations then reveals that the mean K 2Omore » abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.« less

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam on board Curiosity: Potassic Sedimentary Rocks, Gale Crater

DOE Office of Scientific and Technical Information (OSTI.GOV)

Le Deit, L.; Mangold, N.; Forni, O.

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. Furthermore, from ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K 2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations then reveals that the mean K 2Omore » abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.« less

To what extent can intracrater layered deposits that lack clear sedimentary textures be used to infer depositional environments?

NASA Astrophysics Data System (ADS)

Cadieux, Sarah B.; Kah, Linda C.

2015-03-01

Craters within Arabia Terra, Mars, contain hundreds of meters of layered strata showing systematic alternation between slope- and cliff-forming units, suggesting either rhythmic deposition of distinct lithologies or similar lithologies that experienced differential cementation. On Earth, rhythmically deposited strata can be examined in terms of stratal packaging, wherein the interplay of tectonics, sediment deposition, and base level (i.e., the position above which sediment accumulation is expected to be temporary) result in changes in the amount of space available for sediment accumulation. These predictable patterns of sediment deposition can be used to infer changes in basin accommodation regardless of the mechanism of deposition (e.g. fluvial, lacustrine, or aeolian). Here, we analyze sedimentary deposits from three craters (Becquerel Crater, Danielson Crater, Crater A) in Arabia Terra. Each crater contains layered deposits that are clearly observed in orbital images. Although orbital images are insufficient to specifically determine the origin of sedimentary deposits, depositional couplets can be interpreted in terms of potential accommodation space available for deposition, and changes in the distribution of couplet thickness through stratigraphy can be interpreted in terms of changing base level and the production of new accommodation space. Differences in stratal packaging in these three craters suggest varying relationships between sedimentary influx, sedimentary base level, and concomitant changes in accommodation space. Previous groundwater upwelling models hypothesize that layered sedimentary deposits were deposited under warm climate conditions of early Mars. Here, we use observed stacking patterns to propose a model for deposition under cold climate conditions, wherein episodic melting of ground ice could raise local base level, stabilize sediment deposition, and result in differential cementation of accumulated strata. Such analysis demonstrates that

Thin-skinned deformation of sedimentary rocks in Valles Marineris, Mars

USGS Publications Warehouse

Metz, Joannah; Grotzinger, John P.; Okubo, Chris; Milliken, Ralph

2010-01-01

Deformation of sedimentary rocks is widespread within Valles Marineris, characterized by both plastic and brittle deformation identified in Candor, Melas, and Ius Chasmata. We identified four deformation styles using HiRISE and CTX images: kilometer-scale convolute folds, detached slabs, folded strata, and pull-apart structures. Convolute folds are detached rounded slabs of material with alternating dark- and light-toned strata and a fold wavelength of about 1 km. The detached slabs are isolated rounded blocks of material, but they exhibit only highly localized evidence of stratification. Folded strata are composed of continuously folded layers that are not detached. Pull-apart structures are composed of stratified rock that has broken off into small irregularly shaped pieces showing evidence of brittle deformation. Some areas exhibit multiple styles of deformation and grade from one type of deformation into another. The deformed rocks are observed over thousands of kilometers, are limited to discrete stratigraphic intervals, and occur over a wide range in elevations. All deformation styles appear to be of likely thin-skinned origin. CRISM reflectance spectra show that some of the deformed sediments contain a component of monohydrated and polyhydrated sulfates. Several mechanisms could be responsible for the deformation of sedimentary rocks in Valles Marineris, such as subaerial or subaqueous gravitational slumping or sliding and soft sediment deformation, where the latter could include impact-induced or seismically induced liquefaction. These mechanisms are evaluated based on their expected pattern, scale, and areal extent of deformation. Deformation produced from slow subaerial or subaqueous landsliding and liquefaction is consistent with the deformation observed in Valles Marineris.

Sedimentary Signs of a Martian Lakebed

NASA Image and Video Library

2014-12-08

This evenly layered rock photographed by the Mast Camera Mastcam on NASA Curiosity Mars Rover on Aug. 7, 2014, shows a pattern typical of a lake-floor sedimentary deposit not far from where flowing water entered a lake.

Combinatorial Drug Screening Identifies Ewing Sarcoma-specific Sensitivities.

PubMed

Radic-Sarikas, Branka; Tsafou, Kalliopi P; Emdal, Kristina B; Papamarkou, Theodore; Huber, Kilian V M; Mutz, Cornelia; Toretsky, Jeffrey A; Bennett, Keiryn L; Olsen, Jesper V; Brunak, Søren; Kovar, Heinrich; Superti-Furga, Giulio

2017-01-01

Improvements in survival for Ewing sarcoma pediatric and adolescent patients have been modest over the past 20 years. Combinations of anticancer agents endure as an option to overcome resistance to single treatments caused by compensatory pathways. Moreover, combinations are thought to lessen any associated adverse side effects through reduced dosing, which is particularly important in childhood tumors. Using a parallel phenotypic combinatorial screening approach of cells derived from three pediatric tumor types, we identified Ewing sarcoma-specific interactions of a diverse set of targeted agents including approved drugs. We were able to retrieve highly synergistic drug combinations specific for Ewing sarcoma and identified signaling processes important for Ewing sarcoma cell proliferation determined by EWS-FLI1 We generated a molecular target profile of PKC412, a multikinase inhibitor with strong synergistic propensity in Ewing sarcoma, revealing its targets in critical Ewing sarcoma signaling routes. Using a multilevel experimental approach including quantitative phosphoproteomics, we analyzed the molecular rationale behind the disease-specific synergistic effect of simultaneous application of PKC412 and IGF1R inhibitors. The mechanism of the drug synergy between these inhibitors is different from the sum of the mechanisms of the single agents. The combination effectively inhibited pathway crosstalk and averted feedback loop repression, in EWS-FLI1-dependent manner. Mol Cancer Ther; 16(1); 88-101. ©2016 AACR. ©2016 American Association for Cancer Research.

Sedimentary rocks of the coast of Liberia

USGS Publications Warehouse

White, Richard William

1969-01-01

Two basins containing sedimentary rocks o# probable Cretaceous age have been recognized near the coast of Liberia in the area between Monrovia and Buchanan; geophysical evidence suggests that similar though larger basins exist on the adjacent continental shelf. The oldest sedimentary unit recognized, the Paynesville Sandstone of possible early to middle Paleozoic age, is intruded by dikes and sills of diabase of early Jurassic age and lies unconformably on crystalline rocks of late Precambrian age. Dips in the Paynesville Sandstone define a structural basin centered south of Roberts International Airport (formerly called Roberts Field) about 25 miles east of Monrovla. Wackes and conglomerates of Cretaceous age, herein named the Farmington River Formation, unconformably overlie the Paynesville Sandstone and constitute the sedimentary fill in the Roberts basin. The Bassa basin lies to the southeast of the Roberts basin and is separated from it by an upwarp of crystalline rocks. The basin is occupied by wackes and conglomerates of the Farmington River Formation, which apparently lie directly on the crystalline basement. Both basins are bounded on the northeast by northwest-trending dip-slip faults. The best potential for petroleum deposits that exists in Liberia is beneath the adjacent continental shelf and slope. Geophysical exploration and drilling will be required to evaluate this potential.

Enigmatic Sedimentary Deposits Within Partially Exhumed Impact Craters in the Aeolis Dorsa Region, Mars: Evidence for Past Crater Lakes

NASA Astrophysics Data System (ADS)

Peel, S. E.; Burr, D. M.

2018-06-01

We mapped enigmatic sedimentary deposits within five partially exhumed impact craters within the Aeolis Dorsa Region of Mars. Ten units have been identified and are found to be consistent with deposition within and adjacent to lacustrine systems.

Evidence from carbon isotope measurements for diverse origins of sedimentary hydrocarbons

NASA Technical Reports Server (NTRS)

Freeman, K. H.; Hayes, J. M.; Trendel, J. M.; Albrecht, P.

1990-01-01

The organic matter found in sedimentary rocks must derive from many sources; not only from ancient primary producers but also from consumers and secondary producers. In all of these organisms, isotope effects can affect the abundance and distribution of 13C in metabolites. Here, by using an improved form of a previously described technique in which the effluent of a gas chromatograph is continuously analysed isotopically, we report evidence of the diverse origins of sedimentary organic matter. The record of 13C abundances in sedimentary carbonate and total organic carbon can be interpreted in terms of variations in the global carbon cycle. Our results demonstrate, however, that isotope variations within sedimentary organic mixtures substantially exceed those observed between samples of total organic carbon. Resolution of isotope variations at the molecular level offers a new and convenient means of refining views both of localized palaeoenvironments and of control mechanisms within the global carbon cycle.

Excavatability Assessment of Weathered Sedimentary Rock Mass Using Seismic Velocity Method

NASA Astrophysics Data System (ADS)

Bin Mohamad, Edy Tonnizam; Saad, Rosli; Noor, Muhazian Md; Isa, Mohamed Fauzi Bin Md.; Mazlan, Ain Naadia

2010-12-01

Seismic refraction method is one of the most popular methods in assessing surface excavation. The main objective of the seismic data acquisition is to delineate the subsurface into velocity profiles as different velocity can be correlated to identify different materials. The physical principal used for the determination of excavatability is that seismic waves travel faster through denser material as compared to less consolidated material. In general, a lower velocity indicates material that is soft and a higher velocity indicates more difficult to be excavated. However, a few researchers have noted that seismic velocity method alone does not correlate well with the excavatability of the material. In this study, a seismic velocity method was used in Nusajaya, Johor to assess the accuracy of this seismic velocity method with excavatability of the weathered sedimentary rock mass. A direct ripping run by monitoring the actual production of ripping has been employed at later stage and compared to the ripper manufacturer's recommendation. This paper presents the findings of the seismic velocity tests in weathered sedimentary area. The reliability of using this method with the actual rippability trials is also presented.

Method To Identify Specific Inhibiutors Of Imp Dehydrogenase

DOEpatents

Collart, Frank R.; Huberman, Eliezer

2000-11-28

This invention relates to methods to identify specific inhibitors of the purine nucleotide synthesis enzyme, IMP dehydrogenase (IMPDH). IMPDH is an essential enzyme found in all free-living organisms from humans to bacteria and is an important therapeutic target. The invention allows the identification of specific inhibitors of any IMPDH enzyme which can be expressed in a functional form in a recombinant host cell. A variety of eukaryotic or prokaryotic host systems commonly used for the expression of recombinant proteins are suitable for the practice of the invention. The methods are amenable to high throughput systems for the screening of inhibitors generated by combinatorial chemistry or other methods such as antisense molecule production. Utilization of exogenous guanosine as a control component of the methods allows for the identification of inhibitors specific for IMPDH rather than other causes of decreased cell proliferation.

Areal distribution of sedimentary facies determined from seismic facies analysis and models of modern depositional systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seramur, K.C.; Powell, R.D.; Carpenter, P.J.

1988-01-01

Seismic facies analysis was applied to 3.5-kHz single-channel analog reflection profiles of the sediment fill within Muir Inlet, Glacier Bay, southeast Alaska. Nine sedimentary facies have been interpreted from seven seismic facies identified on the profiles. The interpretations are based on reflection characteristics and structural features of the seismic facies. The following reflection characteristics and structural features are used: reflector spacing, amplitude and continuity of reflections, internal reflection configurations, attitude of reflection terminations at a facies boundary, body geometry of a facies, and the architectural associations of seismic facies within each basin. The depositional systems are reconstructed by determining themore » paleotopography, bedding patterns, sedimentary facies, and modes of deposition within the basin. Muir Inlet is a recently deglaciated fjord for which successive glacier terminus positions and consequent rates of glacial retreat are known. In this environment the depositional processes and sediment characteristics vary with distance from a glacier terminus, such that during a retreat a record of these variations is preserved in the aggrading sediment fill. Sedimentary facies within the basins of lower Muir Inlet are correlated with observed depositional processes near the present glacier terminus in the upper inlet.« less

Sedimentary environment and tectonic deformations of the Neoproterozoic Iron formation at the Wadi El-Dabbah greenstone sequence, Central Eastern Desert, Egypt

NASA Astrophysics Data System (ADS)

Kiyokawa, S.; Suzuki, T.; Ikehara, M.; Horie, K.; Takehara, M.; Abd-Elmonem, H.; Dawoud, A. D. M.; El-Hasan, M. M.

2017-12-01

El-Dabbah area Central Eastern Desert of the Nubia Shield preserved Neoproterozoic lower green schist faces volcaniclastics greenstone sequence and covered strike-slip deformation related subaerial sedimentary sequence (Hammamat Group). The volcaniclastics greenstone sequence (El-Dabbah Formation) preserved several iron beds bearing well stratified sequence. Four tectonic deformation identified as this area; thrust deformation (D1), strike-slip deformation with transtension normal fault and strong left-lateral shear (D2), subaerial pull apart sediments basin formed strike-slip deformations (D3), and extensional deformation after the Hammamat Group sedimentation (D4). New age data from intrusions identified about 638 Ma white granite and about 660 Ma quartz porphyry. Based on the detail mapping, we reconstruct more than 5000m thick volcano sedimentary succession. At least, 10 iron rich sections were identified within 3500m thick volcano-sedimentary sequence. There are 14 iron formation sequence identified in this greenstone sequence. Each Iron sequences are bedded with greenish-black shales within massive volcaniclastics and lava flow. Iron formation is formed mostly fine grain magnetite deposited within volcanic mudstone and siltstone with gradual distribution. Timing of this iron sediment is identified within Sturtian glaciation (730-700Ma). However, there is no geological direct support evidence in the Snowball earth event at this greenstone sequence. The volcanic activities at this ocean already produced many Fe2+ to ocean water. Repeated iron precipitation occur during volcanic activity interphase period which produced oxidation of iron and produce oxyhydroxide with mud-silt sediment at bottom of ocean.

Reinterpretation of the Quaternary sedimentary infill of the Ría de Vigo, NW Iberian Peninsula, as a compound incised valley

NASA Astrophysics Data System (ADS)

Martínez-Carreño, N.; García-Gil, S.

2017-10-01

Seismic data have been used to investigate the stratigraphy of the Galician rias for more than two decades. Here, we present a new interpretation of the sedimentary infill of an incised valley (Ría de Vigo, NW Iberian Peninsula), based on high-resolution seismic profiles, core sediment analysis, and radiocarbon 14C data. The new data indicate that the stratigraphic architecture of the Galician rias result from multiple incision/infill phases and, therefore, they are reclassified as compound rather than simple incised valleys. Seven seismic units were identified: one of Tertiary age (U1), four of Pleistocene age (U2-U5) which are interpreted as 4th-order sequences deposited between MIS 11 and MIS 2, and Late Pleistocene (U6) and Holocene (U7) units corresponding with post-glacial sedimentation. The sedimentary infill overlies a highly faulted irregular granitic and metamorphic basement; the inherited morphology is shown to be important for controlling the pathway and evolution of the fluvial network as well as preservation of the sedimentary deposits during several glacial/interglacial cycles. The presence of a rocky barrier at the mouth of the ria is a distinctive feature that conditions sedimentation and exchange of sediment between the ria and the adjacent shelf. For the first time, faults and tilted blocks affecting Late Pleistocene (MIS 3) deposits have been identified. The new data presented here provide the opportunity to reconstruct the evolution of the sedimentary infill of a ria, with especially high-resolution during the last post-glacial transgression.

Sedimentary textures formed by aqueous processes, Erebus crater Meridiani Planum, Mars

USGS Publications Warehouse

Grotzinger, J.; Bell, J.; Herkenhoff, K.; Johnson, J.; Knoll, A.; McCartney, E.; McLennan, S.; Metz, J.; Moore, J.; Squyres, S.; Sullivan, R.; Ahronson, O.; Arvidson, R.; Joliff, B.; Golombek, M.; Lewis, K.; Parker, T.; Soderblom, J.

2006-01-01

New observations at Erebus crater (Olympia outcrop) by the Mars Exploration Rover Opportunity between sols 671 and 735 (a sol is a martian day) indicate that a diverse suite of primary and penecontemporaneous sedimentary structures is preserved in sulfate-rich bedrock. Centimeter-scale trough (festoon) cross-lamination is abundant, and is better expressed and thicker than previously described examples. Postdepositional shrinkage cracks in the same outcrop are interpreted to have formed in response to desiccation. Considered collectively, this suite of sedimentary structures provides strong support for the involvement of liquid water during accumulation of sedimentary rocks at Meridiani Planum. ?? 2006 Geological Society of America.

A multivariate geostatistical methodology to delineate areas of potential interest for future sedimentary gold exploration.

PubMed

Goovaerts, P; Albuquerque, Teresa; Antunes, Margarida

2016-11-01

This paper describes a multivariate geostatistical methodology to delineate areas of potential interest for future sedimentary gold exploration, with an application to an abandoned sedimentary gold mining region in Portugal. The main challenge was the existence of only a dozen gold measurements confined to the grounds of the old gold mines, which precluded the application of traditional interpolation techniques, such as cokriging. The analysis could, however, capitalize on 376 stream sediment samples that were analyzed for twenty two elements. Gold (Au) was first predicted at all 376 locations using linear regression (R 2 =0.798) and four metals (Fe, As, Sn and W), which are known to be mostly associated with the local gold's paragenesis. One hundred realizations of the spatial distribution of gold content were generated using sequential indicator simulation and a soft indicator coding of regression estimates, to supplement the hard indicator coding of gold measurements. Each simulated map then underwent a local cluster analysis to identify significant aggregates of low or high values. The one hundred classified maps were processed to derive the most likely classification of each simulated node and the associated probability of occurrence. Examining the distribution of the hot-spots and cold-spots reveals a clear enrichment in Au along the Erges River downstream from the old sedimentary mineralization.

Sedimentary architecture of a sub-lacustrine debris fan: Eocene Dongying Depression, Bohai Bay Basin, east China

NASA Astrophysics Data System (ADS)

Liu, Jianping; Xian, Benzhong; Wang, Junhui; Ji, Youliang; Lu, Zhiyong; Liu, Saijun

2017-12-01

The sedimentary architectures of submarine/sublacustrine fans are controlled by sedimentary processes, geomorphology and sediment composition in sediment gravity flows. To advance understanding of sedimentary architecture of debris fans formed predominantly by debris flows in deep-water environments, a sub-lacustrine fan (Y11 fan) within a lacustrine succession has been identified and studied through the integration of core data, well logging data and 3D seismic data in the Eocene Dongying Depression, Bohai Bay Basin, east China. Six types of resedimented lithofacies can be recognized, which are further grouped into five broad lithofacies associations. Quantification of gravity flow processes on the Y11 fan is suggested by quantitative lithofacies analysis, which demonstrates that the fan is dominated by debris flows, while turbidity currents and sandy slumps are less important. The distribution, geometry and sedimentary architecture are documented using well data and 3D seismic data. A well-developed depositional lobe with a high aspect ratio is identified based on a sandstone isopach map. Canyons and/or channels are absent, which is probably due to the unsteady sediment supply from delta-front collapse. Distributary tongue-shaped debris flow deposits can be observed at different stages of fan growth, suggesting a lobe constructed by debrite tongue complexes. Within each stage of the tongue complexes, architectural elements are interpreted by wireline log motifs showing amalgamated debrite tongues, which constitute the primary fan elements. Based on lateral lithofacies distribution and vertical sequence analysis, it is proposed that lakefloor erosion, entrainment and dilution in the flow direction lead to an organized distribution of sandy debrites, muddy debrites and turbidites on individual debrite tongues. Plastic rheology of debris flows combined with fault-related topography are considered the major factors that control sediment distribution and fan

Advanced Horizontal Well Recirculation Systems for Geothermal Energy Recovery in Sedimentary and Crystalline Formations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bruno, Mike S.; Detwiler, Russell L.; Lao, Kang

2012-12-13

There is increased recognition that geothermal energy resources are more widespread than previously thought, with potential for providing a significant amount of sustainable clean energy worldwide. Recent advances in drilling, completion, and production technology from the oil and gas industry can now be applied to unlock vast new geothermal resources, with some estimates for potential electricity generation from geothermal energy now on the order of 2 million megawatts. The primary objectives of this DOE research effort are to develop and document optimum design configurations and operating practices to produce geothermal power from hot permeable sedimentary and crystalline formations using advancedmore » horizontal well recirculation systems. During Phase I of this research project Terralog Technologies USA and The University of California, Irvine (UCI), have completed preliminary investigations and documentation of advanced design concepts for paired horizontal well recirculation systems, optimally configured for geothermal energy recovery in permeable sedimentary and crystalline formations of varying structure and material properties. We have also identified significant geologic resources appropriate for application of such technology. The main challenge for such recirculation systems is to optimize both the design configuration and the operating practices for cost-effective geothermal energy recovery. These will be strongly influenced by sedimentary formation properties, including thickness and dip, temperature, thermal conductivity, heat capacity, permeability, and porosity; and by working fluid properties.« less

Sedimentary environment and facies of St Lucia Estuary Mouth, Zululand, South Africa

NASA Astrophysics Data System (ADS)

Wright, C. I.; Mason, T. R.

The St. Lucia Estuary is situated on the subtropical, predominantly microtidal Zululand coast. Modern sedimentary environments within the estuary fall into three categories: (1) barrier environments; (2) abandoned channel environments; and (3) estuarine/lagoonal environments. The barrier-associated environment includes tidal inlet channel, inlet beach face, flood-tidal delta, ebb-tidal delta, spit, backspit and aeolian dune facies. The abandoned channel environment comprises washover fan, tidal creek tidal creek delta and back-barrier lagoon facies. The estuarine/lagoonal environment includes subtidal estuarine channel, side-attached bar, channel margin, mangrove fringe and channel island facies. Each sedimentary facies is characterised by sedimentary and biogenic structures, grain-size and sedimentary processes. Vertical facies sequences produced by inlet channel migration and lagoonal infilling are sufficiently distinct to be recognized in the geological record and are typical of a prograding shoreline.

Formation of Ocean Sedimentary Rocks as Active Planets and Life-Like Systems

NASA Astrophysics Data System (ADS)

Miura, Y.

2017-10-01

Wet shocked rocks are discarded globally and enriched elements in ocean-sedimentary rocks, which is strong indicator of ocean water of other planets. Ocean-sedimentary rocks are strong indicator of water planets and possible exo-life on planet Mars.

Marine and Lacustrine Organic-rich Sedimentary Unit Time Markers: Implications from Rhenium-Osmium Geochronology

NASA Astrophysics Data System (ADS)

Selby, D.

2011-12-01

Geochronology is fundamental to understand the age, rates and durations of Earth processes. This concerned Arthur Holmes who, for much of his career, attempted to define a geological time scale. This is a topic still important to Earth Scientists today, specifically the chronostratigraphy of sedimentary rocks. Here I explore the Re-Os geochronology of marine and lacustrine sedimentary rocks and its application to yield absolute time constraints for stratigraphy. The past decade has seen the pioneering research of Re-Os organic-rich sedimentary rock geochronology blossom into a tool that can now to be used to accurately and precisely determine depositional ages of organic-rich rock units that have experienced up to low grade greenschist metamorphism. This direct dating of sedimentary rocks is critical where volcanic horizons are absent. As a result, this tool has been applied to timescale calibration, basin correlation, formation duration and the timing of key Earth events (e.g., Neoproterozoic glaciations). The application of Re-Os chronometer to the Devonian-Mississippian boundary contained within the Exshaw Formation, Canada, determined an age of 361.3 ± 2.4 Ma. This age is in accord with U-Pb dates of interbedded tuff horizons and also U-Pb zircon date for the type Devonian-Mississippian Hasselbachtal section, Germany. The agreement of the biostratigraphic and U-Pb constraints of the Exshaw Formation with the Re-Os date illustrated the potential of the Re-Os chronometer to yield age determinations for sedimentary packages, especially in the absence of interbedd tuff horizons and biozones. A Re-Os date for the proposed type section of the Oxfordian-Kimmeridgian boundary, Staffin Bay, Isle of Skye, U.K., gave an age of 154.1 ± 2.2 Ma. This Re-Os age presents a 45 % (1.8 Ma) improvement in precision for the basal Kimmeridgian. It also demonstrated that the duration of the Kimmeridgian is nominally 3.3 Ma and thus is 1.6 Ma shorter than previously indicated. In

Prediction of sedimentary facies of x-oilfield in northwest of China by geostatistical inversion

NASA Astrophysics Data System (ADS)

Lei, Zhao; Ling, Ke; Tingting, He

2017-03-01

In the early stage of oilfield development, there are only a few wells and well spacing can reach several kilometers. for the alluvial fans and other heterogeneous reservoirs, information from wells alone is not sufficient to derive detailed reservoir information. In this paper, the method of calculating sand thickness through geostatistics inversion is studied, and quantitative relationships between each sedimentary micro-facies are analyzed by combining with single well sedimentary facies. Further, the sedimentary facies plane distribution based on seismic inversion is obtained by combining with sedimentary model, providing the geological basis for the next exploration and deployment.

Hawai'i and Gale Crater: A Mars Analogue Study of Igneous, Sedimentary, Weathering, and Alteration Trends in Geochemistry

NASA Technical Reports Server (NTRS)

Berger, J. A.; Flemming, R. L.; Schmidt, M. E.; Gellert, R.; Morris, R. V.; Ming, D. W.

2017-01-01

Sedimentary rocks in Gale Crater on Mars indicate a varied provenance with a range of alteration and weathering [1, 2]. Geochemical trends identified in basaltic and alkalic sedimentary rocks by the Alpha Particle X-ray Spectrometer (APXS) on the Mars rover Curiosity represent a complex interplay of igneous, sedimentary, weathering, and alteration processes. Assessing the relative importance of these processes is challenging with unknown compositions for parent sediment sources and with the constraints provided by Curiosity's instruments. We therefore look to Mars analogues on Earth where higher-resolution analyses and geologic context can constrain interpretations of Gale Crater geochemical observations. We selected Maunakea (AKA Mauna Kea) and Kohala volcanoes, Hawai'i, for an analogue study because they are capped by post-shield transitional basalts and alkalic lavas (hawaiites, mugearites) with compositions similar to Gale Crater [1, 3]. Our aim was to characterize Hawaiian geochemical trends associated with igneous processes, sediment transport, weathering, and alteration. Here, we present initial results and discuss implications for selected trends observed by APXS in Gale Crater.

A New Unusual Ice-induced Sedimentary Structure: the Silt Mushroom

PubMed Central

Jianhua, Zhong; Liangtian, Ni; Ningliang, Sun; Chuang, Liu; Bing, Hao; Mengchun, Cao; xin, Chen; Ke, Luo; Shengxin, Liu; Leitong, Huang; Guanqun, Yang; Shaojie, Wang; Feifei, Su; Xuejing, He; Yanqiu, Xue

2016-01-01

Upon channel bars or point bars within the lows of the Yellow River, a new sedimentary structure, named ‘silt mushroom’, has been observed. The process of their formation is interpreted to be via the ice process. The name, the silt mushroom comes from their figurative form. This is because they look somewhat similar to mushroom’s in size and shape; being in the range of 1 to 10 cm in diameter, with the medium 3–5 cm, and on average 10 cm in height, occuring generally in groups, and occasionally in isolation in relatively soft silt. They develop in the transition from winter to spring, and are convincingly related to ice processes. Ice-induced silt mushrooms are best examined in association with the many other newly discovered ice-induced sedimentary structures (over 20 kinds). Clearly, up to now, ice processes have been significantly underestimated. With the substantial discovery of the ice-induced silt mushroom, it opens up new questions. This is because its structure mirrors the same sedimentary structures found in rocks, questioning their genesis, and sedimentary environment analysis. This achievement is significant not only in sedimentology, but also in palaeogeography, palaeoclimate, geological engineering, hydraulics and fluviology. PMID:27833155

Electrical resistivity and induced polarization tomography in identifying the plume of chlorinated hydrocarbons in sedimentary formation: a case study in Rho (Milan - Italy).

PubMed

Cardarelli, Ettore; Di Filippo, Gerardina

2009-09-01

Resistivity and induced polarization surveying were originally developed for mineral exploration but are now finding new applications in the field of environmental and engineering geophysics. The present article reports the results of a geophysical survey performed with the aim of identifying a plume of chlorinated hydrocarbons in sedimentary formations of the Pandania plain. The tested site is characterized by three sand and gravel aquifers containing a quantity of clay particles which influence the overall bulk resistivity and chargeability. According to data obtained using shallow boreholes, mainly dense non-aqueous phase liquids were found as contaminants in the first and second aquifer. The aforementioned geo-electrical methods were applied in both two- and three-dimensional approaches. Steel and copper electrodes were used in the process of field data acquisition and the results of the survey were compared. The geophysical survey revealed some anomalies that could be explained by the presence of dense non-aqueous phase liquids in the soil medium. The concept of normalized chargeability facilitates the interpretation of detected induced polarization anomalies. The shape of the plume was inferred from maps of resistivity and chargeability to a depth of 25 m below the surface of the ground.

Alteration of Sedimentary Clasts in Martian Meteorite Northwest Africa 7034

NASA Technical Reports Server (NTRS)

McCubbin, F. M.; Tartese, R.; Santos, A. R.; Domokos, G.; Muttik, N.; Szabo, T.; Vazquez, J.; Boyce, J. W.; Keller, L. P.; Jerolmack, D. J.;

Determining the Accuracy of Paleomagnetic Remanence and High-Resolution Chronostratigraphy for Sedimentary Rocks using Rock Magnetics

NASA Astrophysics Data System (ADS)

Kodama, K. P.

2017-12-01

The talk will consider two broad topics in rock magnetism and paleomagnetism: the accuracy of paleomagnetic remanence and the use of rock magnetics to measure geologic time in sedimentary sequences. The accuracy of the inclination recorded by sedimentary rocks is crucial to paleogeographic reconstructions. Laboratory compaction experiments show that inclination shallows on the order of 10˚-15˚. Corrections to the inclination can be made using the effects of compaction on the directional distribution of secular variation recorded by sediments or the anisotropy of the magnetic grains carrying the ancient remanence. A summary of all the compaction correction studies as of 2012 shows that 85% of sedimentary rocks studied have enjoyed some amount of inclination shallowing. Future work should also consider the effect of grain-scale strain on paleomagnetic remanence. High resolution chronostratigraphy can be assigned to a sedimentary sequence using rock magnetics to detect astronomically-forced climate cycles. The power of the technique is relatively quick, non-destructive measurements, the objective identification of the cycles compared to facies interpretations, and the sensitivity of rock magnetics to subtle changes in sedimentary source. An example of this technique comes from using rock magnetics to identify astronomically-forced climate cycles in three globally distributed occurrences of the Shuram carbon isotope excursion. The Shuram excursion may record the oxidation of the world ocean in the Ediacaran, just before the Cambrian explosion of metazoans. Using rock magnetic cyclostratigraphy, the excursion is shown to have the same duration (8-9 Myr) in southern California, south China and south Australia. Magnetostratigraphy of the rocks carrying the excursion in California and Australia shows a reversed to normal geomagnetic field polarity transition at the excursion's nadir, thus supporting the synchroneity of the excursion globally. Both results point to a

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru

PubMed Central

Biddle, Jennifer F.; Lipp, Julius S.; Lever, Mark A.; Lloyd, Karen G.; Sørensen, Ketil B.; Anderson, Rika; Fredricks, Helen F.; Elvert, Marcus; Kelly, Timothy J.; Schrag, Daniel P.; Sogin, Mitchell L.; Brenchley, Jean E.; Teske, Andreas; House, Christopher H.; Hinrichs, Kai-Uwe

2006-01-01

Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group, whereas known methanotrophic Archaea are not detectable. Carbon flow reconstructions based on stable isotopic compositions of whole archaeal cells, intact archaeal membrane lipids, and other sedimentary carbon pools indicate that these Archaea assimilate sedimentary organic compounds other than methane even though methanotrophy accounts for a major fraction of carbon cycled in these ecosystems. Oxidation of methane by members of Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group without assimilation of methane–carbon provides a plausible explanation. Maintenance energies of these subsurface communities appear to be orders of magnitude lower than minimum values known from laboratory observations, and ecosystem-level carbon budgets suggest that community turnover times are on the order of 100–2,000 years. Our study provides clues about the metabolic functionality of two cosmopolitan groups of uncultured Archaea. PMID:16505362

A multivariate geostatistical methodology to delineate areas of potential interest for future sedimentary gold exploration

PubMed Central

Goovaerts, P.; Albuquerque, Teresa; Antunes, Margarida

2015-01-01

This paper describes a multivariate geostatistical methodology to delineate areas of potential interest for future sedimentary gold exploration, with an application to an abandoned sedimentary gold mining region in Portugal. The main challenge was the existence of only a dozen gold measurements confined to the grounds of the old gold mines, which precluded the application of traditional interpolation techniques, such as cokriging. The analysis could, however, capitalize on 376 stream sediment samples that were analyzed for twenty two elements. Gold (Au) was first predicted at all 376 locations using linear regression (R2=0.798) and four metals (Fe, As, Sn and W), which are known to be mostly associated with the local gold’s paragenesis. One hundred realizations of the spatial distribution of gold content were generated using sequential indicator simulation and a soft indicator coding of regression estimates, to supplement the hard indicator coding of gold measurements. Each simulated map then underwent a local cluster analysis to identify significant aggregates of low or high values. The one hundred classified maps were processed to derive the most likely classification of each simulated node and the associated probability of occurrence. Examining the distribution of the hot-spots and cold-spots reveals a clear enrichment in Au along the Erges River downstream from the old sedimentary mineralization. PMID:27777638

Sedimentary Rocks of Aram Chaos

NASA Technical Reports Server (NTRS)

2004-01-01

10 May 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows outcroppings of light-toned, layered, sedimentary rock within Aram Chaos, an ancient, partly-filled impact crater located near 3.2oN, 19.9oW. This 1.5 meters (5 feet) per pixel picture is illuminated by sunlight from the left and covers an area about 3 km (1.9 mi) across.

Synchronisation of sedimentary records using tephra: A postglacial tephrochronological model for the Chilean Lake District

NASA Astrophysics Data System (ADS)

Fontijn, Karen; Rawson, Harriet; Van Daele, Maarten; Moernaut, Jasper; Abarzúa, Ana M.; Heirman, Katrien; Bertrand, Sébastien; Pyle, David M.; Mather, Tamsin A.; De Batist, Marc; Naranjo, Jose-Antonio; Moreno, Hugo

2016-04-01

Well-characterised tephra horizons deposited in various sedimentary environments provide a means of synchronising sedimentary archives. The use of tephra as a chronological tool is however still widely underutilised in southern Chile and Argentina. In this study we develop a postglacial tephrochronological model for the Chilean Lake District (ca. 38 to 42°S) by integrating terrestrial and lacustrine records. Tephra deposits preserved in lake sediments record discrete events even if they do not correspond to primary fallout. By combining terrestrial with lacustrine records we obtain the most complete tephrostratigraphic record for the area to date. We present glass geochemical and chronological data for key marker horizons that may be used to synchronise sedimentary archives used for palaeoenvironmental, palaeoclimatological and palaeoseismological purposes. Most volcanoes in the studied segment of the Southern Volcanic Zone, between Llaima and Calbuco, have produced at least one regional marker deposit resulting from a large explosive eruption (magnitude ≥ 4), some of which now have a significantly improved age estimate (e.g., the 10.5 ka Llaima Pumice eruption from Llaima volcano). Others, including several units from Puyehue-Cordón Caulle, are newly described here. We also find tephra related to the Cha1 eruption from Chaitén volcano in lake sediments up to 400 km north from source. Several clear marker horizons are now identified that should help refine age model reconstructions for various sedimentary archives. Our chronological model suggests three distinct phases of eruptive activity impacting the area, with an early-to-mid-Holocene period of relative quiescence. Extending our tephrochronological framework further south into Patagonia will allow a more detailed evaluation of the controls on the occurrence and magnitude of explosive eruptions throughout the postglacial.

Radiographic analysis of sedimentary structures and depositional histories in Apollo 15 cores

NASA Technical Reports Server (NTRS)

Coch, N. K.

1977-01-01

Radiographs of the Apollo 15 deepdrill drive tubes were analyzed on an SDS electronic enhancer to determine sedimentary structures in the core samples. The data obtained were compared with all other Apollo mission radiographs and used to make inferences on the character of sedimentary depositional processes on the lunar surface.

Variety of Sedimentary Process and Distribution of Tsunami Deposits in Laboratory Experiments

NASA Astrophysics Data System (ADS)

Yamaguchi, N.; Sekiguchi, T.

2017-12-01

As an indicator of the history and magnitude of paleotsunami events, tsunami deposits have received considerable attention. To improve the identification and interpretation of paleotsunami deposits, an understanding of sedimentary process and distribution of tsunami deposits is crucial. Recent detailed surveys of onshore tsunami deposits including the 2004 Indian Ocean tsunami and the 2011 Tohoku-oki tsunami have revealed that terrestrial topography causes a variety of their features and distributions. Therefore, a better understanding of possible sedimentary process and distribution on such influential topographies is required. Flume experiments, in which sedimentary conditions can be easily controlled, can provide insights into the effects of terrestrial topography as well as tsunami magnitude on the feature of tsunami deposits. In this presentation, we report laboratory experiments that focused on terrestrial topography including a water body (e.g. coastal lake) on a coastal lowland and a cliff. In both cases, the results suggested relationship between the distribution of tsunami deposits and the hydraulic condition of the tsunami flow associated with the terrestrial topography. These experiments suggest that influential topography would enhance the variability in thickness of tsunami deposits, and thus, in reconstructions of paleotsunami events using sedimentary records, we should take into account such anomalous distribution of tsunami deposits. Further examination of the temporal sequence of sedimentary process in laboratory tsunamis may improve interpretation and estimation of paleotsunami events.

STEPPE: Supporting collaborative research and education on Earth's deep-time sedimentary crust.

NASA Astrophysics Data System (ADS)

Smith, D. M.

2014-12-01

STEPPE—Sedimentary geology, Time, Environment, Paleontology, Paleoclimate, and Energy—is a National Science Foundation supported consortium whose mission is to promote multidisciplinary research and education on Earth's deep-time sedimentary crust. Deep-time sedimentary crust research includes many specialty areas—biology, geography, ecology, paleontology, sedimentary geology, stratigraphy, geochronology, paleoclimatology, sedimentary geochemistry, and more. In fact, the diversity of disciplines and size of the community (roughly one-third of Earth-science faculty in US universities) itself has been a barrier to the formation of collaborative, multidisciplinary teams in the past. STEPPE has been working to support new research synergies and the development of infrastructure that will encourage the community to think about the big problems that need to be solved and facilitate the formation of collaborative research teams to tackle these problems. Toward this end, STEPPE is providing opportunities for workshops, working groups and professional development training sessions, web-hosting and database services and an online collaboration platform that facilitates interaction among participants, the sharing of documentation and workflows and an ability to push news and reports to group participants and beyond using social media tools. As such, STEPPE is working to provide an interactive space that will serve as both a gathering place and clearinghouse for information, allowing for broader integration of research and education across all STEPPE-related sub disciplines.

Atmospheric methane from organic carbon mobilization in sedimentary basins — The sleeping giant?

NASA Astrophysics Data System (ADS)

Kroeger, K. F.; di Primio, R.; Horsfield, B.

2011-08-01

The mass of organic carbon in sedimentary basins amounts to a staggering 10 16 t, dwarfing the mass contained in coal, oil, gas and all living systems by ten thousand-fold. The evolution of this giant mass during subsidence and uplift, via chemical, physical and biological processes, not only controls fossil energy resource occurrence worldwide, but also has the capacity for driving global climate: only a tiny change in the degree of leakage, particularly if focused through the hydrate cycle, can result in globally significant greenhouse gas emissions. To date, neither climate models nor atmospheric CO 2 budget estimates have quantitatively included methane from thermal or microbial cracking of sedimentary organic matter deep in sedimentary basins. Recent estimates of average low latitude Eocene surface temperatures beyond 30 °C require extreme levels of atmospheric CO 2. Methane degassing from sedimentary basins may be a mechanism to explain increases of atmospheric CO 2 to values as much as 20 times higher than pre-industrial values. Increased natural gas emission could have been set in motion either by global tectonic processes such as pulses of activity in the global alpine fold belt, leading to increased basin subsidence and maturation rates in the prolific Jurassic and Cretaceous organic-rich sediments, or by increased magmatic activity such as observed in the northern Atlantic around the Paleocene-Eocene boundary. Increased natural gas emission would have led to global warming that was accentuated by long lasting positive feedback effects through temperature transfer from the surface into sedimentary basins. Massive gas hydrate dissociation may have been an additional positive feedback factor during hyperthermals superimposed on long term warming, such as the Paleocene-Eocene Thermal Maximum (PETM). As geologic sources may have contributed over one third of global atmospheric methane in pre-industrial time, variability in methane flux from sedimentary

Prehistoric (Chalcolithic) Eastern Mediterranean tsunami deposit identified offshore central Israel

NASA Astrophysics Data System (ADS)

Tyuleneva, Natalia; Braun, Yael; Suchkov, Igor; Goodman-Tchernov, Beverly

2017-04-01

The shallow shelf area ( 15-30 m water depth) offshore Israel, bears great potential for paleo-tsunami studies. It was shown in the course of previous research that in these offshore marine deposits, tsunami generated sedimentary layers can be well preserved and readily identified; unlike in onshore sedimentary sequences, which experience continuous exogenous natural and anthropogenic influence. A sediment core, 219 cm long, was obtained from 15.3 m water depth, in about 4 km north of Caesarea. Grain size at 1 cm interval as well as XRD and XRF analyses at coarser resolution were performed. Previously carried out research allowed correlation of two anomalous layers in this core with well described sediment sequences offshore Caesarea. These two events correspond best with the proposed events of 749 AD and 1500 BC. Identified unusual layers in this core bear certain set of proxies that are characteristic for tsunami generated deposits and easily distinguished from the local normal marine setting. The latter is characterized by three dominating mineralogical components, such as carbonaceous sand derived either from biogenic material, namely shell fragments or from eroded limestones and dolomites that outcrop the mountains to the east; siliciclastic quartz for the sand fraction and mineral smectite for the clays. The supply of the two latter terrigenous sedimentary components comes from the Nile River, which has been a stable and predominant source of sediments for the past 8 ka. The aim of this study is to characterize the earliest unusual sedimentary layer found down core between 191 and 211 cm. This layer was attributed to a tsunami-generated sedimentary sequence in the studied core. Absolute age determination based on 14C gave the time frame from 5.6 to 6 ka BP, making this event the oldest identified in the Eastern Mediterranean to date. This tsunami corresponds to the Chalcolithic ('Copper Age') cultural period of the region. Prehistoric age of these sediments

Velocity Models of the Sedimentary Cover and Acoustic Basement, Central Arctic

NASA Astrophysics Data System (ADS)

Bezumov, D. V.; Butsenko, V.

2017-12-01

As the part of the Russian Federation Application on the Extension of the outer limit of the continental shelf in the Arctic Ocean to the Commission for the limits of the continental shelf the regional 2D seismic reflection and sonobuoy data was obtained in 2011, 2012 and 2014 years. Structure and thickness of the sedimentary cover and acoustic basement of the Central Arctic ocean can be refined due to this data. "VNIIOkeangeologia" created a methodology for matching 2D velocity model of the sedimentary cover based on vertical velocity spectrum calculated from wide-angle reflection sonobuoy data and the results of ray tracing of reflected and refracted waves. Matched 2D velocity models of the sedimentary cover in the Russian part of the Arctic Ocean were computed along several seismic profiles (see Figure). Figure comments: a) vertical velocity spectrum calculated from wide-angle reflection sonobuoy data. RMS velocity curve was picked in accordance with interpreted MCS section. Interval velocities within sedimentary units are shown. Interval velocities from Seiswide model are shown in brackets.b) interpreted sonobuoy record with overlapping of time-distance curves calculated by ray-tracing modelling.c) final depth velocity model specified by means of Seiswide software.

Ancient sedimentary structures in the <3.7 Ga Gillespie Lake Member, Mars, that resemble macroscopic morphology, spatial associations, and temporal succession in terrestrial microbialites.

PubMed

Noffke, Nora

2015-02-01

Sandstone beds of the <3.7 Ga Gillespie Lake Member on Mars have been interpreted as evidence of an ancient playa lake environment. On Earth, such environments have been sites of colonization by microbial mats from the early Archean to the present time. Terrestrial microbial mats in playa lake environments form microbialites known as microbially induced sedimentary structures (MISS). On Mars, three lithofacies of the Gillespie Lake Member sandstone display centimeter- to meter-scale structures similar in macroscopic morphology to terrestrial MISS that include "erosional remnants and pockets," "mat chips," "roll-ups," "desiccation cracks," and "gas domes." The microbially induced sedimentary-like structures identified in Curiosity rover mission images do not have a random distribution. Rather, they were found to be arranged in spatial associations and temporal successions that indicate they changed over time. On Earth, if such MISS occurred with this type of spatial association and temporal succession, they would be interpreted as having recorded the growth of a microbially dominated ecosystem that thrived in pools that later dried completely: erosional pockets, mat chips, and roll-ups resulted from water eroding an ancient microbial mat-covered sedimentary surface; during the course of subsequent water recess, channels would have cut deep into the microbial mats, leaving erosional remnants behind; desiccation cracks and gas domes would have occurred during a final period of subaerial exposure of the microbial mats. In this paper, the similarities of the macroscopic morphologies, spatial associations, and temporal succession of sedimentary structures on Mars to MISS preserved on Earth has led to the following hypothesis: The sedimentary structures in the <3.7 Ga Gillespie Lake Member on Mars are ancient MISS produced by interactions between microbial mats and their environment. Proposed here is a strategy for detecting, identifying, confirming, and differentiating

Identifying protein phosphorylation sites with kinase substrate specificity on human viruses.

PubMed

Bretaña, Neil Arvin; Lu, Cheng-Tsung; Chiang, Chiu-Yun; Su, Min-Gang; Huang, Kai-Yao; Lee, Tzong-Yi; Weng, Shun-Long

2012-01-01

Viruses infect humans and progress inside the body leading to various diseases and complications. The phosphorylation of viral proteins catalyzed by host kinases plays crucial regulatory roles in enhancing replication and inhibition of normal host-cell functions. Due to its biological importance, there is a desire to identify the protein phosphorylation sites on human viruses. However, the use of mass spectrometry-based experiments is proven to be expensive and labor-intensive. Furthermore, previous studies which have identified phosphorylation sites in human viruses do not include the investigation of the responsible kinases. Thus, we are motivated to propose a new method to identify protein phosphorylation sites with its kinase substrate specificity on human viruses. The experimentally verified phosphorylation data were extracted from virPTM--a database containing 301 experimentally verified phosphorylation data on 104 human kinase-phosphorylated virus proteins. In an attempt to investigate kinase substrate specificities in viral protein phosphorylation sites, maximal dependence decomposition (MDD) is employed to cluster a large set of phosphorylation data into subgroups containing significantly conserved motifs. The experimental human phosphorylation sites are collected from Phospho.ELM, grouped according to its kinase annotation, and compared with the virus MDD clusters. This investigation identifies human kinases such as CK2, PKB, CDK, and MAPK as potential kinases for catalyzing virus protein substrates as confirmed by published literature. Profile hidden Markov model is then applied to learn a predictive model for each subgroup. A five-fold cross validation evaluation on the MDD-clustered HMMs yields an average accuracy of 84.93% for Serine, and 78.05% for Threonine. Furthermore, an independent testing data collected from UniProtKB and Phospho.ELM is used to make a comparison of predictive performance on three popular kinase-specific phosphorylation site

Coastal sedimentary research examines critical issues of national and global priority

USGS Publications Warehouse

Fletcher, Chip; Anderson, John; Crook, Keith A.W.; Kaminsky, George; Larcombe, Piers; Murray-Wallace, Colin V.; Sansone, Frank; Scott, David B.; Riggs, Stan; Sallenger, Asbury; Shennan, Ian; Thieler, E. Robert; Wehmiller, John F.

2000-01-01

An international conference was held recently in Honolulu, Hawaii, to examine and plan for coastal sedimentary research in the United States and globally. Participants agreed that sedimentary coastal environments constitute a critical national and global resource that suffers widespread degradation due to human impacts. Moreover, human population growth and inappropriate development in the coastal zone are escalating public asset losses due to coastal hazards and placing large numbers of communities at growing risk (Figure 1).

Compaction and sedimentary basin analysis on Mars

NASA Astrophysics Data System (ADS)

Gabasova, Leila R.; Kite, Edwin S.

2018-03-01

Many of the sedimentary basins of Mars show patterns of faults and off-horizontal layers that, if correctly understood, could serve as a key to basin history. Sediment compaction is a possible cause of these patterns. We quantified the possible role of differential sediment compaction for two Martian sedimentary basins: the sediment fill of Gunjur crater (which shows concentric graben), and the sediment fill of Gale crater (which shows outward-dipping layers). We assume that basement topography for these craters is similar to the present-day topography of complex craters that lack sediment infill. For Gunjur, we find that differential compaction produces maximum strains consistent with the locations of observed graben. For Gale, we were able to approximately reproduce the observed layer orientations measured from orbiter image-based digital terrain models, but only with a >3 km-thick donut-shaped past overburden. It is not immediately obvious what geologic processes could produce this shape.

Genetic data from algae sedimentary DNA reflect the influence of environment over geography.

PubMed

Stoof-Leichsenring, Kathleen R; Herzschuh, Ulrike; Pestryakova, Luidmila A; Klemm, Juliane; Epp, Laura S; Tiedemann, Ralph

2015-08-11

Genetic investigations on eukaryotic plankton confirmed the existence of modern biogeographic patterns, but analyses of palaeoecological data exploring the temporal variability of these patterns have rarely been presented. Ancient sedimentary DNA proved suitable for investigations of past assemblage turnover in the course of environmental change, but genetic relatedness of the identified lineages has not yet been undertaken. Here, we investigate the relatedness of diatom lineages in Siberian lakes along environmental gradients (i.e. across treeline transects), over geographic distance and through time (i.e. the last 7000 years) using modern and ancient sedimentary DNA. Our results indicate that closely-related Staurosira lineages occur in similar environments and less-related lineages in dissimilar environments, in our case different vegetation and co-varying climatic and limnic variables across treeline transects. Thus our study reveals that environmental conditions rather than geographic distance is reflected by diatom-relatedness patterns in space and time. We tentatively speculate that the detected relatedness pattern in Staurosira across the treeline could be a result of adaptation to diverse environmental conditions across the arctic boreal treeline, however, a geographically-driven divergence and subsequent repopulation of ecologically different habitats might also be a potential explanation for the observed pattern.

Contaminant behavior in fractured sedimentary rocks: Seeing the fractures that matter

NASA Astrophysics Data System (ADS)

Parker, B. L.

2017-12-01

High resolution spatial sampling of continuous cores from sites contaminated with chlorinated solvents over many decades was used as a strategy to quantify mass stored in low permeability blocks of rock between hydraulically active fractures. Given that core and geophysical logging methods cannot distinguish between hydraulically active fractures and those that do not transmit water, these samples were informed by careful logging of visible fracture features in the core with sample spacing determined by modelled diffusion transport distances given rock matrix properties and expected ages of contamination. These high resolution contaminant concentration profiles from long term contaminated sites in sedimentary rock showed evidence of many more hydraulically active fractures than indicated by the most sophisticated open-hole logging methods. Fracture density is an important attribute affecting fracture connectivity and influencing contaminant plume evolution in fractured porous sedimentary rock. These contaminant profile findings were motivation to find new borehole methods to directly measure hydraulically active fracture occurrence and flux to corroborate the long term "DNAPL tracer experiment" results. Improved sensitivity is obtained when boreholes are sealed using flexible fabric liners (FLUTeTM technology) and various sensor options are deployed in the static water columns used to inflate these liners or in contact with the borehole wall behind the liners. Several methods rely on high resolution temperature measurements of ambient or induced temperature variability such as temperature vector probes (TVP), fiber optic cables for distributed temperature sensing (DTS), both using active heat; packer testing, point dilution testing and groundwater flux measurements between multiple straddle packers to account for leakage. In all cases, numerous hydraulically active fractures are identified over 100 to 300 meters depth, with a large range in transmissivities and

Pre-lithification tectonic foliation development in a clastic sedimentary sequence

NASA Astrophysics Data System (ADS)

Meere, Patrick; Mulchrone, Kieran; McCarthy, David; Timmermann, Martin; Dewey, John

2016-04-01

The current view regarding the timing of regionally developed penetrative tectonic fabrics in sedimentary rocks is that their development postdates lithification of those rocks. In this case fabric development is achieved by a number of deformation mechanisms including grain rigid body rotation, crystal-plastic deformation and pressure solution (wet diffusion). The latter is believed to be the primary mechanism responsible for shortening and the domainal structure of cleavage development commonly observed in low grade metamorphic rocks. In this study we combine field observations with strain analysis and modelling to fully characterise considerable (>50%) mid-Devonian Acadian crustal shortening in a Devonian clastic sedimentary sequence from south west Ireland. Despite these high levels of shortening and associated penetrative tectonic fabric there is a marked absence of the expected domainal cleavage structure and intra-clast deformation, which are expected with this level of deformation. In contrast to the expected deformation processes associated with conventional cleavage development, fabrics in these rocks are a product of translation, rigid body rotation and repacking of extra-formational clasts during deformation of an un-lithified clastic sedimentary sequence.

Archean sedimentary systems and crustal evolution

NASA Technical Reports Server (NTRS)

Lowe, D. R.

1985-01-01

Current knowledge of preserved Archean sedimentary rocks suggests that they accumulated in at least three major depositional settings. These are represented generally by sedimentary units: (1) in early Archean, pre-3.0 Ga old greenstone belts, (2) on late Archean sialic cratons, and (3) in late Archean, post-3.0 Ga old greenstone belts. Research suggests that the Archean was characterized by at least two distinctive and largely diachronous styles of crustal evolution. Thick, stable early Archean simatic platforms, perhaps analogous to modern oceanic islands formed over hot spots, underwent a single cycle of cratonization to form stable continental blocks in the early Archean. Later formed Archean continents show a two stage evolution. The initial stage is reflected in the existence of older sialic material, perhaps representing incompletely cratonized areas or microcontinents of as yet unknown origin. During the second stage, late Archean greenstone belts, perhaps analogous to modern magmatic arcs or back arc basins, developed upon or adjacent to these older sialic blocks. The formation of this generation of Archean continents was largely complete by the end of the Archean. These results suggest that Archean greenstone belts may represent a considerable range of sedimentological and tectonic settings.

Estimating tectonic history through basin simulation-enhanced seismic inversion: Geoinformatics for sedimentary basins

USGS Publications Warehouse

Tandon, K.; Tuncay, K.; Hubbard, K.; Comer, J.; Ortoleva, P.

2004-01-01

A data assimilation approach is demonstrated whereby seismic inversion is both automated and enhanced using a comprehensive numerical sedimentary basin simulator to study the physics and chemistry of sedimentary basin processes in response to geothermal gradient in much greater detail than previously attempted. The approach not only reduces costs by integrating the basin analysis and seismic inversion activities to understand the sedimentary basin evolution with respect to geodynamic parameters-but the technique also has the potential for serving as a geoinfomatics platform for understanding various physical and chemical processes operating at different scales within a sedimentary basin. Tectonic history has a first-order effect on the physical and chemical processes that govern the evolution of sedimentary basins. We demonstrate how such tectonic parameters may be estimated by minimizing the difference between observed seismic reflection data and synthetic ones constructed from the output of a reaction, transport, mechanical (RTM) basin model. We demonstrate the method by reconstructing the geothermal gradient. As thermal history strongly affects the rate of RTM processes operating in a sedimentary basin, variations in geothermal gradient history alter the present-day fluid pressure, effective stress, porosity, fracture statistics and hydrocarbon distribution. All these properties, in turn, affect the mechanical wave velocity and sediment density profiles for a sedimentary basin. The present-day state of the sedimentary basin is imaged by reflection seismology data to a high degree of resolution, but it does not give any indication of the processes that contributed to the evolution of the basin or causes for heterogeneities within the basin that are being imaged. Using texture and fluid properties predicted by our Basin RTM simulator, we generate synthetic seismograms. Linear correlation using power spectra as an error measure and an efficient quadratic

Modern sedimentary environments in Boston Harbor, Massachusetts

USGS Publications Warehouse

Knebel, H.J.; Rendigs, R. R.; Bothner, Michael H.

1991-01-01

Analyses of sidescan-sonar records supplemented by available bathymetric, sedimentary, subbottom, and bottom-current data reveal the distributions of the following three categories of sedimentary environments within the glaciated, topographically complex Boston Harbor estuary in Massachusetts. 1) Environments of erosion appear on the sonographs either as patterns with isolated strong reflections or as uniform patterns of strong reflectivity. These patterns define outcrops of bedrock or till and coarse lag deposits that are being scoured and winnowed by tidal- and wave-induced currents. Erosional areas are located primarily along mainland and insular shores, within large channels that have strong tidal currents, atop submerged ridges and knolls, and across much of the harbor entrance. 2) Environments of deposition are depicted on the sidescan-sonar records as smooth, featureless surfaces that have low to moderate reflectivity. Depositional environments are found predominantly over shallow subtidal flats and in broad bathymetric lows where tidal currents are weak. Sediments within depositional areas are organic-rich sandy and clayey silts that are accumulating at rates ranging from 0.01 to 0.11 g/cm 2 /yr or 4000 to 46,100 metric tons/yr. The cumulative mass of modern mud in harbor depocenters is 24.3 million metric tons. 3) Environments of sediment reworking constitute areas affected by a combination of erosional and depositional processes. They are characterized on the sonographs by mosaics of light and dark patches produced by relatively subtle and gradational changes in reflectivity. Reworked sediments have diverse grain sizes that overlap and are transitional between those of the other two sedimentary environments, and they are indicative of highly variable bottom currents.

New approaches in the indirect quantification of thermal rock properties in sedimentary basins: the well-log perspective

NASA Astrophysics Data System (ADS)

Fuchs, Sven; Balling, Niels; Förster, Andrea

2016-04-01

Numerical temperature models generated for geodynamic studies as well as for geothermal energy solutions heavily depend on rock thermal properties. Best practice for the determination of those parameters is the measurement of rock samples in the laboratory. Given the necessity to enlarge databases of subsurface rock parameters beyond drill core measurements an approach for the indirect determination of these parameters is developed, for rocks as well a for geological formations. We present new and universally applicable prediction equations for thermal conductivity, thermal diffusivity and specific heat capacity in sedimentary rocks derived from data provided by standard geophysical well logs. The approach is based on a data set of synthetic sedimentary rocks (clastic rocks, carbonates and evaporates) composed of mineral assemblages with variable contents of 15 major rock-forming minerals and porosities varying between 0 and 30%. Petrophysical properties are assigned to both the rock-forming minerals and the pore-filling fluids. Using multivariate statistics, relationships then were explored between each thermal property and well-logged petrophysical parameters (density, sonic interval transit time, hydrogen index, volume fraction of shale and photoelectric absorption index) on a regression sub set of data (70% of data) (Fuchs et al., 2015). Prediction quality was quantified on the remaining test sub set (30% of data). The combination of three to five well-log parameters results in predictions on the order of <15% for thermal conductivity and thermal diffusivity, and of <10% for specific heat capacity. Comparison of predicted and benchmark laboratory thermal conductivity from deep boreholes of the Norwegian-Danish Basin, the North German Basin, and the Molasse Basin results in 3 to 5% larger uncertainties with regard to the test data set. With regard to temperature models, the use of calculated TC borehole profiles approximate measured temperature logs with an

Sedimentary particulate iron: the missing micronutrients ?

NASA Astrophysics Data System (ADS)

Beghoura, Houda; Gorgues, Thomas; Aumont, Olivier; Planquette, Hélène

2017-04-01

Iron is known to regulate the marine primary production and to impact the structure of ecosystems. Indeed, iron is the limiting nutrient for the phytoplankton growth over about 30% of the global ocean. However, the nature of the external sources of iron to the ocean and their quantification remain uncertain. Among these external sources, the sediment sources have been recently shown to be underestimated. Besides, since the operationally defined dissolved iron (which is the sum of truly dissolved and colloidal iron) was traditionally assumed to be the only form available to phytoplankton and bacteria, most studies have focused on the supply of dissolved iron to the ocean, the role of the particulate fraction of iron being largely ignored. This traditional view has been recently challenged, noticeably, by observational evidences. Indeed, in situ observations have shown that large amounts of particulate iron are being resuspended from continental margins to the open ocean thanks to fine grained particles' transport over long distances. A fraction of this particulate iron may dissolve and thereby fuel the phytoplankton growth. The magnitude of the sedimentary sources of particulate iron and the releasing processes affecting this iron phase are not yet well constrained or quantified. As a consequence, the role of sedimentary particulate iron in the biogeochemical cycles is still unclear despite its potentially major widespread importance. Here, we propose a modeling exercise to assess the first order impacts of this newly considered particulate sedimentary iron on global ocean biogeochemistry. We designed global experiments with a coupled dynamical-biogeochemical model (NEMO-PISCES). First, a control simulation that includes only a sediment source of iron in the dissolved phase has been run. Then, this control simulation is being compared with simulations, in which we include a sediment source of iron in both phases (dissolved as well as particulate). Those latter

Sedimentary Mounds on Mars: Tracing Present-day Formation Processes into the Past

NASA Technical Reports Server (NTRS)

Niles, P. B.; Michalski, J.; Edwards, C. S.

2014-01-01

High resolution photography and spectroscopy of the martian surface (MOC, HiRISE) from orbit has revolutionized our view of Mars with one and revealed spectacular views of finely layered sedimentary materials throughout the globe [1]. Some of these sedimentary deposits are 'mound' shaped and lie inside of craters (Fig 1). Crater mound deposits are found throughout the equatorial region, as well as ice-rich deposits found in craters in the north and south polar region [2-4]. Despite their wide geographical extent and varying volatile content, the 'mound' deposits have a large number of geomorphic and structural similarities that suggest they formed via equivalent processes. Thus, modern depositional processes of ice and dust can serve as an invaluable analog for interpreting the genesis of ancient sedimentary mound deposits.

Flow regulation manipulates contemporary seasonal sedimentary dynamics in the reservoir fluctuation zone of the Three Gorges Reservoir, China.

PubMed

Tang, Qiang; Bao, Yuhai; He, Xiubin; Fu, Bojie; Collins, Adrian L; Zhang, Xinbao

2016-04-01

Since the launch of the Three Gorges Dam on the Yangtze River, a distinctive reservoir fluctuation zone has been created and significantly modified by regular dam operations. Sediment redistribution within this artificial landscape differs substantially from that in natural fluvial riparian zones, due to a specific hydrological regime comprising steps of water impoundment with increasing magnitudes and seasonal water level fluctuation holding a range of sediment fluxes. This study reinterpreted post-dam sedimentary dynamics in the reservoir fluctuation zone by stratigraphy determination of a 345-cm long sediment core, and related it to impact of the hydrological regime. Seasonality in absolute grain-size composition of suspended sediment was applied as a methodological basis for stratigraphic differentiation. Sedimentary laminations with relatively higher proportions of sandy fractions were ascribed to sedimentation during the dry season when proximal subsurface bank erosion dominates source contributions, while stratigraphy with a lower proportion of sandy fractions is possibly contributed by sedimentation during the wet season when distal upstream surface erosion prevails. Chronology determination revealed non-linear and high annual sedimentation rates ranging from 21.7 to 152.1cm/yr. Although channel geomorphology may primarily determine the spatial extent of sedimentation, seasonal sedimentary dynamics was predominantly governed by the frequency, magnitude, and duration of flooding. Summer inundation by natural floods with enhanced sediment loads produced from upstream basins induced higher sedimentation rates than water impoundment during the dry season when distal sediment supply was limited. We thus conclude that flow regulation manipulates contemporary seasonal sedimentary dynamics in the reservoir fluctuation zone, though little impact on total sediment retention rate was detected. Ongoing reductions in flow and sediment supply under human disturbance may

Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures

PubMed Central

Wang, Ying; Fu, Lei; Ren, Jie; Yu, Zhaoxia; Chen, Ting; Sun, Fengzhu

2018-01-01

Comparing metagenomic samples is crucial for understanding microbial communities. For different groups of microbial communities, such as human gut metagenomic samples from patients with a certain disease and healthy controls, identifying group-specific sequences offers essential information for potential biomarker discovery. A sequence that is present, or rich, in one group, but absent, or scarce, in another group is considered “group-specific” in our study. Our main purpose is to discover group-specific sequence regions between control and case groups as disease-associated markers. We developed a long k-mer (k ≥ 30 bps)-based computational pipeline to detect group-specific sequences at strain resolution free from reference sequences, sequence alignments, and metagenome-wide de novo assembly. We called our method MetaGO: Group-specific oligonucleotide analysis for metagenomic samples. An open-source pipeline on Apache Spark was developed with parallel computing. We applied MetaGO to one simulated and three real metagenomic datasets to evaluate the discriminative capability of identified group-specific markers. In the simulated dataset, 99.11% of group-specific logical 40-mers covered 98.89% disease-specific regions from the disease-associated strain. In addition, 97.90% of group-specific numerical 40-mers covered 99.61 and 96.39% of differentially abundant genome and regions between two groups, respectively. For a large-scale metagenomic liver cirrhosis (LC)-associated dataset, we identified 37,647 group-specific 40-mer features. Any one of the features can predict disease status of the training samples with the average of sensitivity and specificity higher than 0.8. The random forests classification using the top 10 group-specific features yielded a higher AUC (from ∼0.8 to ∼0.9) than that of previous studies. All group-specific 40-mers were present in LC patients, but not healthy controls. All the assembled 11 LC-specific sequences can be mapped to two

Hypocretin neuron-specific transcriptome profiling identifies the sleep modulator Kcnh4a.

PubMed

Yelin-Bekerman, Laura; Elbaz, Idan; Diber, Alex; Dahary, Dvir; Gibbs-Bar, Liron; Alon, Shahar; Lerer-Goldshtein, Tali; Appelbaum, Lior

2015-10-01

Sleep has been conserved throughout evolution; however, the molecular and neuronal mechanisms of sleep are largely unknown. The hypothalamic hypocretin/orexin (Hcrt) neurons regulate sleep\\wake states, feeding, stress, and reward. To elucidate the mechanism that enables these various functions and to identify sleep regulators, we combined fluorescence cell sorting and RNA-seq in hcrt:EGFP zebrafish. Dozens of Hcrt-neuron-specific transcripts were identified and comprehensive high-resolution imaging revealed gene-specific localization in all or subsets of Hcrt neurons. Clusters of Hcrt-neuron-specific genes are predicted to be regulated by shared transcription factors. These findings show that Hcrt neurons are heterogeneous and that integrative molecular mechanisms orchestrate their diverse functions. The voltage-gated potassium channel Kcnh4a, which is expressed in all Hcrt neurons, was silenced by the CRISPR-mediated gene inactivation system. The mutant kcnh4a (kcnh4a(-/-)) larvae showed reduced sleep time and consolidation, specifically during the night, suggesting that Kcnh4a regulates sleep.

Sedimentary Framework of an Inner Continental Shelf Sand-Ridge System, West-Central Florida

NASA Astrophysics Data System (ADS)

Locker, S. D.; Hine, A. C.; Wright, A. K.; Duncan, D. S.

2002-12-01

The west-central Florida inner continental shelf is a dynamic environment subject to current flows on a variety of temporal and spatial scales. A site survey program, undertaken in support of the Office of Naval Research's Mine Burial prediction program, is focused on the sedimentary framework and sediment accumulation patterns in 10-18 meters water depth. Our specific goals are to image the shallow subsurface and to monitor changes in bedform distribution patterns that coincide with physical processes studies ongoing in the area. Methods of study include side-scan sonar imaging, boomer and chirp subbottom profiling, and sedimentary facies analysis using surface sediment sampling and vibracoring. A well-defined sand-ridge system was imaged, trending oblique to the west-Florida coastline. The side-scan clearly shows that there is extensive three-dimensional structure within these large-scale NW-SE trending sedimentary bedforms. The sand ridges commonly are approximately 1 km wide and 4-8 km in length. The characteristics of these ridges are distinctly different than the sand ridges in < 8 m water that we have previously studied. Ridges in the offshore area tend to be thicker, have a flatter morphology, and exhibit fewer smaller-scale sand waves. Sand-ridge thickness ranges 2-3 meters, and typically consists of fining upward medium to fine quartz sand facies with occasional centimeter-scale coarser-grained carbonate-rich intervals. Time series investigations tracking the shift in position of the sand ridge margins have found undetectable net annual movement. However significant resuspension and bedform development accompanies high-energy events such as winter cold front passage. Thus the large-scale bedforms (sand ridges) are in a state of dynamic equilibrium with the average annual hydrodynamic regime. Repeated field surveys will focus on monitoring small-scale sedimentological and stratal framework changes that will be integrated with the quantitative process

Sedimentary Rocks and Methane - Southwest Arabia Terra

NASA Technical Reports Server (NTRS)

Allen, Carlton C.; Oehler, Dorothy Z.; Venechuk, Elizabeth M.

2006-01-01

We propose to land the Mars Science Laboratory in southwest Arabia Terra to study two key aspects of martian history the extensive record of sedimentary rocks and the continuing release of methane. The results of this exploration will directly address the MSL Scientific Objectives regarding biological potential, geology and geochemistry, and past habitability.

SMM-system: A mining tool to identify specific markers in Salmonella enterica.

PubMed

Yu, Shuijing; Liu, Weibing; Shi, Chunlei; Wang, Dapeng; Dan, Xianlong; Li, Xiao; Shi, Xianming

2011-03-01

This report presents SMM-system, a software package that implements various personalized pre- and post-BLASTN tasks for mining specific markers of microbial pathogens. The main functionalities of SMM-system are summarized as follows: (i) converting multi-FASTA file, (ii) cutting interesting genomic sequence, (iii) automatic high-throughput BLASTN searches, and (iv) screening target sequences. The utility of SMM-system was demonstrated by using it to identify 214 Salmonella enterica-specific protein-coding sequences (CDSs). Eighteen primer pairs were designed based on eighteen S. enterica-specific CDSs, respectively. Seven of these primer pairs were validated with PCR assay, which showed 100% inclusivity for the 101 S. enterica genomes and 100% exclusivity of 30 non-S. enterica genomes. Three specific primer pairs were chosen to develop a multiplex PCR assay, which generated specific amplicons with a size of 180bp (SC1286), 238bp (SC1598) and 405bp (SC4361), respectively. This study demonstrates that SMM-system is a high-throughput specific marker generation tool that can be used to identify genus-, species-, serogroup- and even serovar-specific DNA sequences of microbial pathogens, which has a potential to be applied in food industries, diagnostics and taxonomic studies. SMM-system is freely available and can be downloaded from http://foodsafety.sjtu.edu.cn/SMM-system.html. Copyright © 2011 Elsevier B.V. All rights reserved.

Excess europium content in Precambrian sedimentary rocks and continental evolution

NASA Technical Reports Server (NTRS)

Jakes, P.; Taylor, S. R.

1974-01-01

It is proposed that the europium excess in Precambrian sedimentary rocks, relative to those of younger age, is derived from volcanic rocks of ancient island arcs, which were the source materials for the sediments. Precambrian sedimentary rocks and present-day volcanic rocks of island arcs have similar REE patterns, total REE abundances, and excess Eu, relative to the North American shale composite. The present upper crustal REE pattern, as exemplified by that of sediments, is depleted in Eu, relative to chondrites. This depletion is considered to be a consequence of development of a granodioritic upper crust by partial melting in the lower crust, which selectively retains europium.

Method For Identifying Sedimentary Bodies From Images And Its Application To Mineral Exploration

NASA Technical Reports Server (NTRS)

Wilkinson, Murray Justin (Inventor)

2006-01-01

A method is disclosed for identifying a sediment accumulation from an image of a part of the earth's surface. The method includes identifying a topographic discontinuity from the image. A river which crosses the discontinuity is identified from the image. From the image, paleocourses of the river are identified which diverge from a point where the river crosses the discontinuity. The paleocourses are disposed on a topographically low side of the discontinuity. A smooth surface which emanates from the point is identified. The smooth surface is also disposed on the topographically low side of the point.

Sedimentary condensation and authigenesis

NASA Astrophysics Data System (ADS)

Föllmi, Karl

2016-04-01

Most marine authigenic minerals form in sediments, which are subjected to condensation. Condensation processes lead to the formation of well individualized, extremely thin (< 1m) beds, which were accumulated during extremely long time periods (> 100ky), and which experienced authigenesis and the precipitation of glaucony, verdine, phosphate, iron and manganese oxyhydroxides, iron sulfide, carbonate and/or silica. They usually show complex internal stratigraphies, which result from an interplay of sediment accumulation, halts in sedimentation, sediment winnowing, erosion, reworking and bypass. They may include amalgamated faunas of different origin and age. Hardgrounds may be part of condensed beds and may embody strongly condensed beds by themselves. Sedimentary condensation is the result of a hydrodynamically active depositional regime, in which sediment accumulation, winnowing, erosion, reworking and bypass are processes, which alternate as a function of changes in the location and intensity of currents, and/or as the result of episodic high-energy events engendered by storms and gravity flow. Sedimentary condensation has been and still is a widespread phenomenon in past and present-day oceans. The present-day distribution of glaucony and verdine-rich sediments on shelves and upper slopes, phosphate-rich sediments and phosphorite on outer shelves and upper slopes, ferromanganese crusts on slopes, seamounts and submarine plateaus, and ferromanganese nodules on abyssal seafloors is a good indication of the importance of condensation processes today. In the past, we may add the occurrence of oolitic ironstone, carbonate hardgrounds, and eventually also silica layers in banded iron formations as indicators of the importance of condensation processes. Besides their economic value, condensed sediments are useful both as a carrier of geochemical proxies of paleoceanographic and paleoenvironmental change, as well as the product of episodes of paleoceanographic and

Sedimentary sequence evolution in a Foredeep basin: Eastern Venezuela

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bejarano, C.; Funes, D.; Sarzalho, S.

1996-08-01

Well log-seismic sequence stratigraphy analysis in the Eastern Venezuela Foreland Basin leads to study of the evolution of sedimentary sequences onto the Cretaceous-Paleocene passive margin. This basin comprises two different foredeep sub-basins: The Guarico subbasin to the west, older, and the Maturin sub-basin to the east, younger. A foredeep switching between these two sub-basins is observed at 12.5 m.y. Seismic interpretation and well log sections across the study area show sedimentary sequences with transgressive sands and coastal onlaps to the east-southeast for the Guarico sub-basin, as well as truncations below the switching sequence (12.5 m.y.), and the Maturin sub-basin showsmore » apparent coastal onlaps to the west-northwest, as well as a marine onlap (deeper water) in the west, where it starts to establish. Sequence stratigraphy analysis of these sequences with well logs allowed the study of the evolution of stratigraphic section from Paleocene to middle Miocene (68.0-12.0 m.y.). On the basis of well log patterns, the sequences were divided in regressive-transgressive-regressive sedimentary cycles caused by changes in relative sea level. Facies distributions were analyzed and the sequences were divided into simple sequences or sub- sequences of a greater frequencies than third order depositional sequences.« less

Genetic data from algae sedimentary DNA reflect the influence of environment over geography

PubMed Central

Stoof-Leichsenring, Kathleen R.; Herzschuh, Ulrike; Pestryakova, Luidmila A.; Klemm, Juliane; Epp, Laura S.; Tiedemann, Ralph

2015-01-01

Genetic investigations on eukaryotic plankton confirmed the existence of modern biogeographic patterns, but analyses of palaeoecological data exploring the temporal variability of these patterns have rarely been presented. Ancient sedimentary DNA proved suitable for investigations of past assemblage turnover in the course of environmental change, but genetic relatedness of the identified lineages has not yet been undertaken. Here, we investigate the relatedness of diatom lineages in Siberian lakes along environmental gradients (i.e. across treeline transects), over geographic distance and through time (i.e. the last 7000 years) using modern and ancient sedimentary DNA. Our results indicate that closely-related Staurosira lineages occur in similar environments and less-related lineages in dissimilar environments, in our case different vegetation and co-varying climatic and limnic variables across treeline transects. Thus our study reveals that environmental conditions rather than geographic distance is reflected by diatom-relatedness patterns in space and time. We tentatively speculate that the detected relatedness pattern in Staurosira across the treeline could be a result of adaptation to diverse environmental conditions across the arctic boreal treeline, however, a geographically-driven divergence and subsequent repopulation of ecologically different habitats might also be a potential explanation for the observed pattern. PMID:26261899

Characteristics of sedimentary structures in coarse-grained alluvial rivers

NASA Astrophysics Data System (ADS)

Ackerley, David; Powell, Mark

2013-04-01

The characteristics of coarse-grained alluvial surfaces have important implications for the estimation of flow resistance, entrainment thresholds and sediment transport rates in gravel-bed rivers. This area of research has, thus, demanded attention from geomorphologists, sedimentologists, and river engineers. The majority of research has focused towards understanding the characteristics and adjustments in surface grain size. Bed stability, however, is not ultimately defined by particle size but how grains are arranged within the bed surface. For example, by the organisation of particles into a variety of grain and form scale sedimentary structures and bedforms (e.g. imbrication; pebble clusters, stone nets, transverse ribs). While it is widely acknowledged sedimentary structuring must be considered within estimates of flow resistance and sediment transport, relatively little is known about the structural properties of water-worked river gravels. As a consequence, we remain woefully ignorant of this important aspect of gravel-bed river sedimentology. The aim of this poster is to present some preliminary results of a study designed to characterise the morphodynamics of sedimentary structures in coarse-grained alluvial rivers and their implications upon entrainment thresholds and sediment transport rates. The poster focuses on investigating the variability in grain and form scale sedimentary structuring across a number of field sites. Representative patches of three gravel bars on the Rivers Wharfe, Manifold and Afon Elan, UK, have been surveyed using a Leica HDS 3000 Terrestrial Laser Scanner. The resultant raw point-cloud data, recorded at a 4mm resolution, has been registered, filtered, and interpolated to produce highly detailed 2½D digital elevation models of gravel-bed surface topography. These surfaces have been analysed using a number of structural parameters including bed elevation probability distribution function statistics (standard deviation, skewness

Chemical composition of sedimentary rocks in California and Hawaii

USGS Publications Warehouse

Hill, Thelma P.

1981-01-01

A compilation of published chemical analyses of sedimentary rocks of the United States was undertaken by the U.S. Geological Survey in 1952 to make available scattered data that are needed for a wide range of economic and scientific uses. About 20,000-25,000 chemical analyses of sedimentary rocks in the United States have been published. This report brings together 2,312 of these analyses from California and Hawaii. The samples are arranged by general lithologic characteristics and locality. Indexes of stratigraphy, rock name, commercial uses, and minor elements are provided. The sedimentary rocks are classified into groups and into categories according to the chemical analyses. The groups (A through F2) are defined by a system similar to that proposed by Brian Mason in 1952, in which the main parameters are the three major components of sedimentary rocks: (1) uncombined silica, (2) clay (R203 ? 3Si02 ? nH20), and (3) calcium-magnesium carbonate. The categories are based on the degree of admixture of these three major components with other components, such as sulfate, phos- phate, and iron oxide. Common-rock, mixed-rock, and special-rock categories apply to rocks consisting of 85 percent or more, 50-84 percent, and less than 49 percent, respectively, of the three major components combined. Maps show distribution of sample localities by States; triangular diagrams show the lithologic characteristics and classification groups. Cumulative-frequency curves of each constituent in each classification group of the common-rock and mixed-rock categories are also included. The numerous analyses may not adequately represent the geochemical nature of the rock types and formations of the region because of sampling bias. Maps showing distribution of sample localities indicate that many of the localities are in areas where, for economic or other reasons, special problems attracted interest. Most of the analyzed rocks tended to be fairly simple in composition - mainly mixtures of

Scotland's forgotten carbon: a national assessment of mid-latitude fjord sedimentary carbon stocks

NASA Astrophysics Data System (ADS)

Smeaton, Craig; Austin, William E. N.; Davies, Althea L.; Baltzer, Agnes; Howe, John A.; Baxter, John M.

2017-12-01

Fjords are recognised as hotspots for the burial and long-term storage of carbon (C) and potentially provide a significant climate regulation service over multiple timescales. Understanding the magnitude of marine sedimentary C stores and the processes which govern their development is fundamental to understanding the role of the coastal ocean in the global C cycle. In this study, we use the mid-latitude fjords of Scotland as a natural laboratory to further develop methods to quantify these marine sedimentary C stores on both the individual fjord and national scale. Targeted geophysical and geochemical analysis has allowed the quantification of sedimentary C stocks for a number of mid-latitude fjords and, coupled with upscaling techniques based on fjord classification, has generated the first full national sedimentary C inventory for a fjordic system. The sediments within these mid-latitude fjords hold 640.7 ± 46 Mt of C split between 295.6 ± 52 and 345.1 ± 39 Mt of organic and inorganic C, respectively. When compared, these marine mid-latitude sedimentary C stores are of similar magnitude to their terrestrial equivalents, with the exception of the Scottish peatlands, which hold significantly more C. However, when area-normalised comparisons are made, these mid-latitude fjords are significantly more effective as C stores than their terrestrial counterparts, including Scottish peatlands. The C held within Scotland's coastal marine sediments has been largely overlooked as a significant component of the nation's natural capital; such coastal C stores are likely to be key to understanding and constraining improved global C budgets.

Tectonic Impact on the Sedimentary Magnetic Record in Active Margin Settings

NASA Astrophysics Data System (ADS)

Riedinger, N.; Torres, M. E.; Solomon, E. A.

2017-12-01

Here we explore the impact of depositional and tectonic dynamics on sedimentary magnetic signals using samples collected during the Integrated Ocean Drilling Project (IODP) Expedition 334 off Costa Rica. This active margin system displays fast convergence rates, abundant seismicity, and subduction erosion, and thus allows us to study fluid flow responses to rapid episodes of uplift and subsidence in an erosional convergent margin - one of the main goals of the Costa Rica Seismogenesis Project (CRISP). The sediments at the middle slope site (Site U1378; 533 m water depth) vary strongly in their magnetic susceptibility and geochemical signals compared to the upper slope site (Site U1379; 139 m water depth). The more recent sediments at each site (upper 50 m) clearly show that Site U1378 experienced relative steady state conditions (with respect to pore water geochemistry), while at Site U1379 dynamic conditions lead to non-steady state geochemical profiles - and consequently to a differing magnetic susceptibility profile. These differences are most likely related to changes in methane flux and subsequent shifting of the sulfate-methane transition. Throughout the sediment column at Hole U1379C intervals showing a strong decrease in the magnetic susceptibility can be correlated with specific lithological horizons with abundant carbonate layers. Our data show that these layers are formed diagenetically, based on a depleted carbonate carbon isotope signal (up to -25‰) that is consistent with the pore water record. The carbonate layers not only caused a dilution in the magnetic mineral assemblages, but also point to a concurrent alteration process of iron oxides to iron sulfides. This is recorded in the sedimentary record as iron sulfide (pyrite) enrichments and their associated sulfur isotopic signature (δ34S; up to +6.3‰). These alterations can be tied to a location fluctuation of the sulfate-methane transition due to changes in the methane flux. The strong

Salix alba and Populus nigra seedlings resistance to physical hydro-sedimentary stresses: nursery experimental approach compared to in situ measurements

NASA Astrophysics Data System (ADS)

Wintenberger, Coraline; Rodrigues, Stephane; Breheret, Jean-Gabriel; Jugé, Philippe; Villar, Marc

2014-05-01

In Europe, riparian Salicaceae is declining following the loss of potential germination areas associated with river management. Nevertheless, as an exception for lowland rivers, the Loire River (France) shows in its middle reaches an efficient sexual regeneration of Populus nigra and Salix alba species on bare sediments deposited during flood events. The study focuses on the influence of flow, sediment dynamics and fluvial maintenance operations on the establishment and survival of black poplar and white willow seedlings during the first year of development in a lowland sandy-gravel river, the Middle Loire. Main questions are: what is the influence of morphological and sedimentary features on seedlings recruitment and how do they withstand the hydro-sedimentary stresses occurring during high flow periods? How fluvial management works, and induced morphology and sedimentary features, modify the sediment dynamics and subsequent establishment and maintenance of seedlings? To answer these questions, we developed an ex-situ approach which allowed, under controlled conditions, to determine the influence of the sedimentological characteristics of the substrate on the development and maintenance of seedlings with a specific focus on the root system. Three experiments were carried out for three sedimentary mixtures from the river (sand, sand-gravel and 0.2 m of sand superimposed on sand-gravel mixture) that correspond to grain size and stratigraphy conditions often observed on bars and secondary channels in the Loire. The experimental design includes 108 plots of 1 m3, with 400 seeds per plot (corresponding to the Loire density measurements) and combining seeds from two species, three sedimentary mixtures, four replicates and three experiments. Experiment 1 (control) is based on the architecture of root systems using the WinRHIZO image analysis software. Experiment 2 is relative to the evaluation of constraints leading to "uprooting" of seedlings. Experiment 3 provides data

Palynostratigraphy of the Erkovtsy field of brown coal (the Zeya-Bureya sedimentary basin)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kezina, T.V.; Litvinenko, N.D.

2007-08-15

The Erkovtsy brown coal field in the northwestern Zeya-Bureya sedimentary basin (129-130{sup o}E, 46-47{sup o}N) is structurally confined to southern flank of the Mesozoic-Cenozoic Belogor'e depression. The verified stratigraphic scheme of the coalfield sedimentary sequence is substantiated by palynological data on core samples from 18 boreholes sampled in the course of detailed prospecting and by paleobotanical analysis of sections in the Yuzhnyi sector of the coalfield (data of 1998 by M.A. Akhmetiev and S.P. Manchester). Sections of the Erkovtsy, Arkhara-Boguchan, and Raichikha brown-coal mines are correlated. Stratigraphic subdivisions distinguished in the studied sedimentary succession are the middle and upper Tsagayanmore » subformations (the latter incorporating the Kivda Beds), Raichikha, Mukhino, Buzuli, and Sazanka formations.« less

Sedimentary architecture of the Shaler outcrop, Gale Crater, Mars: paleoenvironmental and sediment transport implications

NASA Astrophysics Data System (ADS)

Gupta, S.; Edgar, L. A.; Rubin, D. M.; Lewis, K. W.; Kocurek, G.; Anderson, R. B.; Bell, J. F.; Dromart, G.; Edgett, K. S.; Grotzinger, J. P.; Hardgrove, C. J.; Kah, L. C.; Leveille, R. J.; Malin, M.; Mangold, N.; Milliken, R.; Minitti, M. E.; Muller, J.; Rice, M. S.; Rowland, S. K.; Schieber, J.; Stack, K.; Sumner, D. Y.; Team, M.

2013-12-01

Sedimentary rocks are archives of ancient depositional processes and environments on planetary surfaces. Reconstructing such processes and environments requires observations of sedimentary structures and architecture (the large-scale geometry and organisation of sedimentary bedsets). We report the analysis of the distinct Shaler outcrop, a prominent stratified unit located between the Bathurst Inlet outcrop and the floor of Yellowknife bay. The Shaler outcrop is an ~1 m thick stratal unit that spans approximately 30 m outcrop in length, and was examined by Curiosity on sols 120-121 and more recently on sols 309-324. Detailed stereo observations of the outcrop across most of its entire lateral extent were made using Navigation and Mast Cameras. These data permit detailed analysis of stratal geometries, distribution of sedimentary structures, and broad grain size trends. Overall the Shaler outcrop comprises a heterogeneous assemblage of interstratified platy sandstones separated by recessive, likely finer-grained beds. Coarser-grained beds are characterised by decimeter-scale trough cross-bedding. The north-eastern section of the outcrop shows greater abundance of interstratified sandstones and finer-grained beds. The southwestern section is characterised by darker bedsets that are likely coarser grained interstratified with finer-grained sandstones. The darker bedsets appear to comprise stacked trough-cross stratified bedsets. Finer-grained recessive intervals are not apparent in this section. The presence and scale of trough cross-stratification indicates that sediment was transported by the migration of sinuous crested dunes. Bedding geometries indicate sub-critical angles of climb. We examine the large-scale bedset architecture to evaluate the original depositional geometry of the Shaler sedimentary system, and consider its plausible depositional processes and paleoenvironmental setting. Finally, we consider its relationship to the sedimentary succession exposed

Geology, Geochemistry and Geophysics of Sedimentary Rock-Hosted Au Deposits in P.R. China

USGS Publications Warehouse

Peters, Stephen G.

2002-01-01

This is the second report concerning results of a joint project between the U.S. Geological Survey and the Tianjin Geological Academy to study sedimentary rock-hosted Au deposits in P.R. China. Since the 1980s, Chinese geologists have devoted a large-scale exploration and research effort to the deposits. As a result, there are more than 20 million oz of proven Au reserves in sedimentary rock-hosted Au deposits in P.R. China. Additional estimated and inferred resources are present in over 160 deposits and occurrences, which are undergoing exploration. This makes China second to Nevada in contained ounces of Au in Carlin-type deposits. It is likely that many of the Carlin-type Au ore districts in China, when fully developed, could have resource potential comparable to the multi-1,000-tonne Au resource in northern Nevada. The six chapters of this report describe sedimentary rock-hosted Au deposits that were visited during the project. Chapters 1 and 2 provide an overview of sedimentary rock-hosted Au deposits and Carlin-type Au deposits and also provide a working classification for the sedimentary rock-hosted Au deposits. Chapters 3, 4, and 5 provide descriptions that were compiled from the literature in China in three main areas: the Dian-Qian-Gui, the Qinling fold belt, and Middle-Lower Yangtze River areas. Chapter 6 contains a weights-of-evidence (WofE), GIS-based mineral assessment of sedimentary rock-hosted Au deposits in the Qinling fold belt and Dian-Qian-Gui areas. Appendices contain scanned aeromagnetic (Appendix I) and gravity (Appendix II) geophysical maps of south and central China. Data tables of the deposits (Appendix III) also are available in the first report as an interactive database at http://geopubs.wr.usgs.gov/open-file/of98-466/. Geochemical analysis of ore samples from the deposits visited are contained in Appendix IV.

Sedimentary structures and stratal geometries at the foothills of Mount Sharp: their role in paleoenvironmental interpretation

NASA Astrophysics Data System (ADS)

Gupta, S.; Rubin, D. M.; Sumner, D. Y.; Grotzinger, J. P.; Lewis, K. W.; Stack, K.; Kah, L. C.; Banham, S.; Edgett, K. S.

2015-12-01

The Mars Science Laboratory Curiosity rover has been exploring sedimentary rocks at the foothills of Mount Sharp since August 2014. Robust interpretation of the paleoenvironmental contexts requires detailed facies analysis of these rocks including analysis and interpretation of sedimentary structures and sediment body geometries. Here, we describe some of the detailed sedimentary structures and sedimentary geometries observed by Curiosity between the Pahrump_Hills field site and its current location at Marias Pass. The Pahrump Hills sedimentary section comprises a succession dominated by finely laminated mudstones of the Murray formation that are interpreted to have been deposited in an ancient lake within Gale crater. Toward the top of the Pahump Hills succession, we observe the appearance of coarser-grained sandstones that are interstratified within the lacustrine mudstones. These sandstones that include Whale Rock and Newspaper Rock show lenticular geometries, and are pervasively cross-stratified. These features indicate that currents eroded shallow scours in the lake beds that were then infilled by deposition from migrating subaqueous dunes. The paleoenvironmental setting may represent either a gullied delta front setting or one in which lake level fall caused fluvial erosion and infilling of the shallow scours. Since leaving Pahrump_Hills, Curiosity has imaged extensive exposures of strata that are partly correlative with and stratigraphically overlie the uppermost part of the Pahrump section. Isolated cross-bedded sandstones and possible interstratified conglomerates beds occur within Murray formation mudstones. Capping sandstones with a likely variety of environmental contexts overlie mudstones. Where imaged in detail, sedimentary structures, such as trough-cross bedding and possible eolian pinstriping, provide constraints on plausible sedimentary processes and bounds on depositional setting.

Tectono-sedimentary features in the Yap subduction zone, Western Pacific: constraints from latest integrated geophysical survey

NASA Astrophysics Data System (ADS)

Dong, D.; Zhang, G.; Bai, Y.; Fan, J.; Zhang, Z.

2017-12-01

The Yap subduction zone, western Pacific, is a typical structure related to the ridge subduction, but comparative shortage of the geophysical data makes the structural details unknown in this area. In this study, we present the latest and high-quality multi-beam swath bathymetry and multi-channel seismic data acquired synchronously in the year 2015 across the Yap subduction zone. Multichannel seismic and multi-beam data are mainly applied to investigate the topography of major tectonic units and stratigraphic structure in the Yap subduction zone and discuss the tectonic characteristics controlled by ridge subduction. It suggests that, Parece Vela Basin, as the regional sedimentary center, developed sedimentary layers nearly 800 meters thick. On the contrast, the horizontal sedimentary layers were not obviously identified in the Yap trench, where subduction erosion occurred. Caroline ridge changed the tectonic characteristics of subduction zone, and influenced magmatism of the Yap arc because of the special topography. The seismic profile clearly reveals landslide deposits at the upper slope break of the forearc, north of the Yap Island, which was identified as the fault notch denoting a lithological boundary in previous work. Detailed topography and geological structure of horst and graben in the north of Yap are depicted, and topographic high of Caroline ridge is supposed to bring greater bending and tension and the subsequent horst and graben belt. Multichannel seismic evidence has been provided for interpreting the expansion of Sorol Trough and its inferred age. A modified model for the Yap subduction zone evolution is proposed, incorporating three major tectonic events: proto-Yap Arc rupture in the Oligocene, collision of the Caroline Ridge and the Yap Trench in the Late Oligocene or Middle Miocene, and onset of the Sorol Trough rifting in the Late Miocene. Acknowledge: This study was supported by the Strategic Priority Research Program of the Chinese Academy

Sources of Minor and Rare-Earth Elements in Hydrothermal Edifices of Near-Continental Rifts with Sedimentary Cover: Evidence from the Guaymas Basin, Southern Trough

NASA Astrophysics Data System (ADS)

Lein, A. Yu.; Dara, O. M.; Bogdanova, O. Yu.; Novikov, G. V.; Ulyanova, N. V.; Lisitsyn, A. P.

2018-03-01

The mineralogy and geochemistry of a fragment of an active hydrothermal edifice from the Hydrothermal Hill of the Southern Trough valley of the Guaymas Basin in the Gulf of California were studied. The sample was collected from a depth of 1995 m by the Pisces manned submersible on cruise 12 of the R/V Akademik Mstislav Keldysh, Institute of Oceanology, Russian Academy of Sciences. The fragment and the edifice itself consists of two accrete pipes: ore (pyrrhotite) and barren (carbonate) combined in a single edifice by an outer barite-opal zone. The ore edifice is located in the rift zone of the Guaymas Basin with a thick sedimentary cover and is depleted in metals in comparison with ores from rift zones of the open ocean, which are not blocked by sedimentary deposits. This is explained by loss of metals at the boundary between hot sills and sedimentary rocks and by the processes of interaction of hydrothermal solutions with sedimentary deposits. The sedimentary series faciitates long-term preservation of endogenous heat and the ore formation process. Ore edifices of the Guaymas Basin are mostly composed of pyrrhotite, have a specific set of major elements, microelements and REEs, and contain naphthenic hydrocarbons. They may be search signs of hidden polymetallic deposits, considered to be the roots of ore occurrences localized under the surface of the bottom in young active rifts with high spreading and sedimentation rates, i.e., in near-continental areas of rifts of the humid zone with avalanche sedimentation.

Optimization of Well Configuration for a Sedimentary Enhanced Geothermal Reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Mengnan; Cho, JaeKyoung; Zerpa, Luis E.

The extraction of geothermal energy in the form of hot water from sedimentary rock formations could expand the current geothermal energy resources toward new regions. From previous work, we observed that sedimentary geothermal reservoirs with relatively low permeability would require the application of enhancement techniques (e.g., well hydraulic stimulation) to achieve commercial production/injection rates. In this paper we extend our previous work to develop a methodology to determine the optimum well configuration that maximizes the hydraulic performance of the geothermal system. The geothermal systems considered consist of one vertical well doublet system with hydraulic fractures, and three horizontal well configurationsmore » with open-hole completion, longitudinal fractures and transverse fractures, respectively. A commercial thermal reservoir simulation is used to evaluate the geothermal reservoir performance using as design parameters the well spacing and the length of the horizontal wells. The results obtained from the numerical simulations are used to build a response surface model based on the multiple linear regression method. The optimum configuration of the sedimentary geothermal systems is obtained from the analysis of the response surface model. The proposed methodology is applied to a case study based on a reservoir model of the Lyons sandstone formation, located in the Wattenberg field, Denver-Julesburg basin, Colorado.« less

The organic geochemistry of black sedimentary barite: significance and implications of trapped fatty acids

USGS Publications Warehouse

Miller, R.E.; Brobst, D.A.; Beck, P.C.

1977-01-01

Fatty acids isolated in sedimentary black barite (BaSO4) from Arkansas and Nevada were identified by gas chromatography-mass spectroscopy. The dominant or major fatty acids found in these beds of barite are C16:0, C18:0, and C18:1. The occurrence and distribution of these acids in this type of rock may serve as "molecular fingerprints" of microbial biogeochemical processes. The organic matter and associated microorganisms are shown to be trapped within the finely crystalline barite, thus forming a closed system for microbial diagenesis. Important differences that occur in the distribution of the lesser or minor fatty acids probably result from: (1) the nature of the progenitor organic detritus in the environment of barite deposition: and (2) the subsequent degree of microbiological alteration of the parent organic debris swept into and trapped in the depositional environment. Three general models of sedimentary environments are proposed in which anoxic conditions may prevail and where barium sulfate (BaSO4) may precipitate: (1) in a silled basin with semi-restricted circulation; (2) on an outer continental shelf where the slope is encroached upon by water of the oxygen minimum layer; (3) on a low-energy, inner shelf or semi-restricted embayment impinged by a wedge of anoxic water. The major geochemical and geological parameters which are believed to be the significant factors controlling the formation and high grade of these organic-rich, black bedded barites are: (1) a unique source of barium-rich fluid that only contains trace amounts of other elements; (2) the presence of an anoxic bottom environment within the depositional basin; (3) a reflux source of sulfate ion; (4) an adequate source of organic matter. The results of this study may serve as guidelines for future exploration in similar, untested sedimentary basins, especially those with rocks of middle Paleozoic age. ?? 1977.

Mongolian Oil Shale, hosted in Mesozoic Sedimentary Basins

NASA Astrophysics Data System (ADS)

Bat-Orshikh, E.; Lee, I.; Norov, B.; Batsaikhan, M.

2016-12-01

Mongolia contains several Mesozoic sedimentary basins, which filled >2000 m thick non-marine successions. Late Triassic-Middle Jurassic foreland basins were formed under compression tectonic conditions, whereas Late Jurassic-Early Cretaceous rift valleys were formed through extension tectonics. Also, large areas of China were affected by these tectonic events. The sedimentary basins in China host prolific petroleum and oil shale resources. Similarly, Mongolian basins contain hundreds meter thick oil shale as well as oil fields. However, petroleum system and oil shale geology of Mongolia remain not well known due to lack of survey. Mongolian oil shale deposits and occurrences, hosted in Middle Jurassic and Lower Cretaceous units, are classified into thirteen oil shale-bearing basins, of which oil shale resources were estimated to be 787 Bt. Jurassic oil shale has been identified in central Mongolia, while Lower Cretaceous oil shale is distributed in eastern Mongolia. Lithologically, Jurassic and Cretaceous oil shale-bearing units (up to 700 m thick) are similar, composed mainly of alternating beds of oil shale, dolomotic marl, siltstone and sandstone, representing lacustrine facies. Both Jurassic and Cretaceous oil shales are characterized by Type I kerogen with high TOC contents, up to 35.6% and low sulfur contents ranging from 0.1% to 1.5%. Moreover, S2 values of oil shales are up to 146 kg/t. The numbers indicate that the oil shales are high quality, oil prone source rocks. The Tmax values of samples range from 410 to 447, suggesting immature to early oil window maturity levels. PI values are consistent with this interpretation, ranging from 0.01 to 0.03. According to bulk geochemistry data, Jurassic and Cretaceous oil shales are identical, high quality petroleum source rocks. However, previous studies indicate that known oil fields in Eastern Mongolia were originated from Lower Cretaceous oil shales. Thus, further detailed studies on Jurassic oil shale and its

Sedimentary organic molecules: Origins and information content

NASA Technical Reports Server (NTRS)

Hayes, J. M.; Freeman, K. H.

1991-01-01

To progress in the study of organic geochemistry, we must dissect the processes controlling the composition of sedimentary organic matter. Structurally, this has proven difficult. Individual biomarkers can often be recognized, but their contribution to total organic materials is small, and their presence does not imply that their biochemical cell mates have survived. We are finding, however, that a combination of structural and isotopic lines of evidence provides new information. A starting point is provided by the isotopic compositions of primary products (degradation products of chlorophylls, alkenones derived from coccoliths). We find strong evidence that the isotopic difference between primary carbonate and algal organic material can be interpreted in terms of the concentration of dissolved CO2. Moreover, the isotopic difference between primary and total organic carbon can be interpreted in terms of characteristic isotopic shifts imposed by secondary processes (responsive, for example, to O2 levels in the depositional environment. In favorable cases, isotopic compositions of a variety of secondary products can be interpreted in terms of flows of carbon, and, therefore, in terms of specific processes and environmental conditions within the depositional environment.

A Hydrothermal-Sedimentary Context for the Origin of Life

PubMed Central

Hickman-Lewis, K.; Hinman, N.; Gautret, P.; Campbell, K.A.; Bréhéret, J.G.; Foucher, F.; Hubert, A.; Sorieul, S.; Dass, A.V.; Kee, T.P.; Georgelin, T.; Brack, A.

2018-01-01

Abstract Critical to the origin of life are the ingredients of life, of course, but also the physical and chemical conditions in which prebiotic chemical reactions can take place. These factors place constraints on the types of Hadean environment in which life could have emerged. Many locations, ranging from hydrothermal vents and pumice rafts, through volcanic-hosted splash pools to continental springs and rivers, have been proposed for the emergence of life on Earth, each with respective advantages and certain disadvantages. However, there is another, hitherto unrecognized environment that, on the Hadean Earth (4.5–4.0 Ga), would have been more important than any other in terms of spatial and temporal scale: the sedimentary layer between oceanic crust and seawater. Using as an example sediments from the 3.5–3.33 Ga Barberton Greenstone Belt, South Africa, analogous at least on a local scale to those of the Hadean eon, we document constant permeation of the porous, carbonaceous, and reactive sedimentary layer by hydrothermal fluids emanating from the crust. This partially UV-protected, subaqueous sedimentary environment, characterized by physical and chemical gradients, represented a widespread system of miniature chemical reactors in which the production and complexification of prebiotic molecules could have led to the origin of life. Key Words: Origin of life—Hadean environment—Mineral surface reactions—Hydrothermal fluids—Archean volcanic sediments. Astrobiology 18, 259–293. PMID:29489386

Microstructural evolution of gas hydrates in sedimentary matrices observed with synchrotron X-ray computed tomographic microscopy

NASA Astrophysics Data System (ADS)

Chaouachi, Marwen; Falenty, Andrzej; Sell, Kathleen; Enzmann, Frieder; Kersten, Michael; Haberthür, David; Kuhs, Werner F.

2015-06-01

The formation process of gas hydrates in sedimentary matrices is of crucial importance for the physical and transport properties of the resulting aggregates. This process has never been observed in situ at submicron resolution. Here we report on synchrotron-based microtomographic studies by which the nucleation and growth processes of gas hydrate were observed at 276 K in various sedimentary matrices such as natural quartz (with and without admixtures of montmorillonite type clay) or glass beads with different surface properties, at varying water saturation. Both juvenile water and metastably gas-enriched water obtained from gas hydrate decomposition was used. Xenon gas was employed to enhance the density contrast between gas hydrate and the fluid phases involved. The nucleation sites can be easily identified and the various growth patterns are clearly established. In sediments under-saturated with juvenile water, nucleation starts at the water-gas interface resulting in an initially several micrometer thick gas hydrate film; further growth proceeds to form isometric single crystals of 10-20 µm size. The growth of gas hydrate from gas-enriched water follows a different pattern, via the nucleation in the bulk of liquid producing polyhedral single crystals. A striking feature in both cases is the systematic appearance of a fluid phase film of up to several micron thickness between gas hydrates and the surface of the quartz grains. These microstructural findings are relevant for future efforts of quantitative rock physics modeling of gas hydrates in sedimentary matrices and explain the anomalous attenuation of seismic/sonic waves.

Sources and distribution of sedimentary organic matter along the Andong salt marsh, Hangzhou Bay

NASA Astrophysics Data System (ADS)

Yuan, Hong-Wei; Chen, Jian-Fang; Ye, Ying; Lou, Zhang-Hua; Jin, Ai-Min; Chen, Xue-Gang; Jiang, Zong-Pei; Lin, Yu-Shih; Chen, Chen-Tung Arthur; Loh, Pei Sun

2017-10-01

Lignin oxidation products, δ13C values, C/N ratios and particle size were used to investigate the sources, distribution and chemical stability of sedimentary organic matter (OM) along the Andong salt marsh located in the southwestern end of Hangzhou Bay, China. Terrestrial OM was highest at the upper marshes and decreased closer to the sea, and the distribution of sedimentary total organic carbon (TOC) was influenced mostly by particle size. Terrestrial OM with a C3 signature was the predominant source of sedimentary OM in the Spartina alterniflora-dominated salt marsh system. This means that aside from contributions from the local marsh plants, the Andong salt marsh received input mostly from the Qiantang River and the Changjiang Estuary. Transect C, which was situated nearer to the Qiantang River mouth, was most likely influenced by input from the Qiantang River. Likewise, a nearby creek could be transporting materials from Hangzhou Bay into Transect A (farther east than Transect C), as Transect A showed a signal resembling that of the Changjiang Estuary. The predominance of terrestrial OM in the Andong salt marsh despite overall reductions in sedimentary and terrestrial OM input from the rivers is most likely due to increased contributions of sedimentary and terrestrial OM from erosion. This study shows that lower salt marsh accretion due to the presence of reservoirs upstream may be counterbalanced by increased erosion from the surrounding coastal areas.

Predicted facies, sedimentary structures and potential resources of Jurassic petroleum complex in S-E sWestern Siberia (based on well logging data)

NASA Astrophysics Data System (ADS)

Prakojo, F.; Lobova, G.; Abramova, R.

2015-11-01

This paper is devoted to the current problem in petroleum geology and geophysics- prediction of facies sediments for further evaluation of productive layers. Applying the acoustic method and the characterizing sedimentary structure for each coastal-marine-delta type was determined. The summary of sedimentary structure characteristics and reservoir properties (porosity and permeability) of typical facies were described. Logging models SP, EL and GR (configuration, curve range) in interpreting geophysical data for each litho-facies were identified. According to geophysical characteristics these sediments can be classified as coastal-marine-delta. Prediction models for potential Jurassic oil-gas bearing complexes (horizon J11) in one S-E Western Siberian deposit were conducted. Comparing forecasting to actual testing data of layer J11 showed that the prediction is about 85%.

Gas hydrate identified in sand-rich inferred sedimentary section using downhole logging and seismic data in Shenhu area, South China Sea

USGS Publications Warehouse

Wang, Xiujuan; Lee, Myung W.; Collett, Timothy S.; Yang, Shengxiong; Guo, Yiqun; Wu, Shiguo

2014-01-01

Downhole wireline log (DWL) data was acquired from eight drill sites during China's first gas hydrate drilling expedition (GMGS-1) in 2007. Initial analyses of the acquired well log data suggested that there were no significant gas hydrate occurrences at Site SH4. However, the re-examination of the DWL data from Site SH4 indicated that there are two intervals of high resistivity, which could be indicative of gas hydrate. One interval of high resistivity at depth of 171–175 m below seafloor (mbsf) is associated with a high compressional- wave (P-wave) velocities and low gamma ray log values, which suggests the presence of gas hydrate in a potentially sand-rich (low clay content) sedimentary section. The second high resistivity interval at depth of 175–180 mbsf is associated with low P-wave velocities and low gamma values, which suggests the presence of free gas in a potentially sand-rich (low clay content) sedimentary section. Because the occurrence of free gas is much shallower than the expected from the regional depth of the bottom simulating reflector (BSR), the free gas could be from the dissociation of gas hydrate during drilling or there may be a local anomaly in the depth to the base of the gas hydrate stability zone. In order to determine whether the low P-wave velocity with high resistivity is caused by in-situ free gas or dissociated free gas from the gas hydrate, the surface seismic data were also used in this analysis. The log analysis incorporating the surface seismic data through the construction of synthetic seismograms using various models indicated the presence of free gas directly in contact with an overlying gas hydrate-bearing section. The occurrence of the anomalous base of gas hydrate stability at Site SH4 could be caused by a local heat flow conditions. This paper documents the first observation of gas hydrate in what is believed to be a sand-rich sediment in Shenhu area of the South China Sea.

Reactive Transport Modeling Investigation of High Dissolved Sulfide Concentrations in Sedimentary Basin Rocks

NASA Astrophysics Data System (ADS)

Xie, M.; Mayer, U. K.; MacQuarrie, K. T. B.

2017-12-01

Water with total dissolved sulfide in excess of 1 mmol L-1is widely found in groundwater at intermediate depths in sedimentary basins, including regions of the Michigan basin in southeastern Ontario, Canada. Conversely, at deeper and shallower depths, relatively low total dissolved sulfide concentrations have been reported. The mechanisms responsible for the occurrence of these brackish sulfide-containing waters are not fully understood. Anaerobic microbial sulfate reduction is a common process resulting in the formation of high sulfide concentrations. Sulfate reduction rates depend on many factors including the concentration of sulfate, the abundance of organic substances, redox conditions, temperature, salinity and the species of sulfate reducing bacteria (SRB). A sedimentary basin-specific conceptual model considering the effect of salinity on the rate of sulfate reduction was developed and implemented in the reactive transport model MIN3P-THCm. Generic 2D basin-scale simulations were undertaken to provide a potential explanation for the dissolved sulfide distribution observed in the Michigan basin. The model is 440 km in the horizontal dimension and 4 km in depth, and contains fourteen sedimentary rock units including shales, sandstones, limestones, dolostone and evaporites. The main processes considered are non-isothermal density dependent flow, kinetically-controlled mineral dissolution/precipitation and its feedback on hydraulic properties, cation exchange, redox reactions, biogenic sulfate reduction, and hydromechanical coupling due to glaciation-deglaciation events. Two scenarios were investigated focusing on conditions during an interglacial period and the transient evolution during a glaciation-deglaciation cycle. Inter-glaciation simulations illustrate that the presence of high salinity brines strongly suppress biogenic sulfate reduction. The transient simulations show that glaciation-deglaciation cycles can have an impact on the maximum depth of

Sedimentary Flux to Passive Margins From Inversion of Drainage Patterns: Examples from Africa

NASA Astrophysics Data System (ADS)

Lodhia, Bhavik Harish; Roberts, Gareth G.; Fraser, Alastair

2017-04-01

We show that inversion of more than 14000 rivers from the African continent provides information about Cenozoic uplift and sedimentary flux to its passive margins. We test predicted sedimentary flux using a dense two-dimensional seismic dataset offshore northwest Africa. First, six biostratigraphically dated horizons were mapped (seabed, 5.6 Ma, 23.8 Ma, 58.40 Ma, 89.4 Ma and basement) across the Mauritanian margin and used to construct isopachs. Check-shot data were used to convert time to depth and to determine best-fitting compaction parameters. Observed solid sedimentary fluxes are ˜2x103 km3 /Ma between 58.4 and 23.8 Ma, ˜4x103 km3 /Ma between 23.8 and 5.6 Ma, and ˜28x103 km3 /Ma between 5.6 and 0 Ma. Compaction errors were propagated into our history of sedimentary flux. Secondly, we inverted our drainage inventory to explore the relationship between uplift and erosion onshore and our measured flux. The stream power erosional model was calibrated using independent observations of marine terrace elevations and ages. We integrate incision rates along best-fitting theoretical river profiles to predict sedimentary flux at mouths of the rivers draining northwest Africa (e.g. Senegal). Calculated Neogene uplift and erosion is staged. Our predicted history of sedimentary flux increases in three stages towards the present-day, which agrees with the offshore measurements. Finally, using our inverse approach we systematically tested different erosional scenarios. We find that sedimentary flux to Africa's passive margins is controlled up the history of uplift and erosional processes play a moderating role. Predicted fluxes are indistinguishable if precipitation rate varies with a period less than ˜ 1 Ma or drainage area varies by less than 50%. To investigate the geodynamic setting of the Mauritanian margin we backstripped eight commercial wells that penetrate Neogene stratigraphy. Wells in the central part of the Mauritania basin include 500-800 m of Neogene water

3D mechanical stratigraphy of a deformed multi-layer: Linking sedimentary architecture and strain partitioning

NASA Astrophysics Data System (ADS)

Cawood, Adam J.; Bond, Clare E.

2018-01-01

Stratigraphic influence on structural style and strain distribution in deformed sedimentary sequences is well established, in models of 2D mechanical stratigraphy. In this study we attempt to refine existing models of stratigraphic-structure interaction by examining outcrop scale 3D variations in sedimentary architecture and the effects on subsequent deformation. At Monkstone Point, Pembrokeshire, SW Wales, digital mapping and virtual scanline data from a high resolution virtual outcrop have been combined with field observations, sedimentary logs and thin section analysis. Results show that significant variation in strain partitioning is controlled by changes, at a scale of tens of metres, in sedimentary architecture within Upper Carboniferous fluvio-deltaic deposits. Coupled vs uncoupled deformation of the sequence is defined by the composition and lateral continuity of mechanical units and unit interfaces. Where the sedimentary sequence is characterized by gradational changes in composition and grain size, we find that deformation structures are best characterized by patterns of distributed strain. In contrast, distinct compositional changes vertically and in laterally equivalent deposits results in highly partitioned deformation and strain. The mechanical stratigraphy of the study area is inherently 3D in nature, due to lateral and vertical compositional variability. Consideration should be given to 3D variations in mechanical stratigraphy, such as those outlined here, when predicting subsurface deformation in multi-layers.

Sea-floor morphology and sedimentary environments in western Block Island Sound, offshore of Fishers Island, New York

USGS Publications Warehouse

McMullen, Katherine Y.; Poppe, Lawrence J.; Danforth, William W.; Blackwood, Dann S.; Winner, William G.; Parker, Castle E.

2015-01-01

Multibeam-bathymetric and sidescan-sonar data, collected by the National Oceanic and Atmospheric Administration in a 114-square-kilometer area of Block Island Sound, southeast of Fishers Island, New York, are combined with sediment samples and bottom photography collected by the U.S. Geological Survey from 36 stations in this area in order to interpret sea-floor features and sedimentary environments. These interpretations and datasets provide base maps for studies on benthic ecology and resource management. The geologic features and sedimentary environments on the sea floor are products of the area’s glacial history and modern processes. These features include bedrock, drumlins, boulders, cobbles, large current-scoured bathymetric depressions, obstacle marks, and glaciolacustrine sediments found in high-energy sedimentary environments of erosion or nondeposition; and sand waves and megaripples in sedimentary environments characterized by coarse-grained bedload transport. Trawl marks are preserved in lower energy environments of sorting and reworking. This report releases the multibeam-bathymetric, sidescan-sonar, sediment, and photographic data and interpretations of the features and sedimentary environments in Block Island Sound, offshore Fishers Island.

Sedimentary Environment Changes between Tsunami Events in the Central Fukushima Prefecture, Japan

NASA Astrophysics Data System (ADS)

Kusumoto, S.; Goto, T.; Satake, K.; Sugai, T.; Yoneda, M.; Omori, T.; Ozaki, H.

2016-12-01

Many tsunami deposits were found in the Tohoku region, Japan from recent and past tsunamis. Study of tsunami deposits is particularly important in the central to southern Fukushima Prefecture, which is the southern limit of the distributions of tsunami deposits of the 869 Jogan, 1454 Kyotoku and 1611 Keicho-Sanriku earthquakes. Previous studies reported that there were at least five tsunami deposits (EV1-EV5) consisted of fine-middle sand and the sedimentary environment was inner-bay or lagoon for the past 2,600 years (Goto and Aoyama, 2005; JpGU, Oikawa et al., 2011; JpGU, Oota and Hoyanagi, 2014; GSJ, Kusumoto et al., 2016; JpGU). However, the sedimentary environment changes between or across historical tsunamis have not been examined. In this study, we try to estimate the sedimentary environment changes using Total Organic Carbon (TOC), Total Nitrogen (TN) concentrations and organic Carbon-to-Nitrogen (C/N) ratio. We took 13 geological core samples of length 2.0-2.5 m at 11 locations 0.6-2.7 km from the coast. The deposits consisted of silt and massive sand with graded beddings, laminas and rip-up clasts. For samples, we performed grain-size analysis, radiocarbon age measurement and CN elemental analysis. We found three interesting characteristics. First, grain size of ordinary deposits between EV4 and EV5 tend to fine upward slightly. It suggests that tidal current became gradually weak. Second, C/N ratio is about 5-10 at every depth, meaning that organic material source was phytoplankton or zooplankton (Müller, 1977; GCA). Finally, TOC and TN concentrations slowly increase between EV4 and EV5, and they rapidly decrease across EV3 and EV4. Their slow increases correspond to sedimentary environment change from anaerobic to aerobic, whereas rapid decreases correspond to sedimentary environment change from aerobic to anaerobic. These characteristics might indicate development of sand bar between tsunami events and sudden collapse of sand bar by historical

Hydrogeologic framework of sedimentary deposits in six structural basins, Yakima River basin, Washington

USGS Publications Warehouse

Jones, M.A.; Vaccaro, J.J.; Watkins, A.M.

2006-01-01

The hydrogeologic framework was delineated for the ground-water flow system of the sedimentary deposits in six structural basins in the Yakima River Basin, Washington. The six basins delineated, from north to south are: Roslyn, Kittitas, Selah, Yakima, Toppenish, and Benton. Extent and thicknesses of the hydrogeologic units and total basin sediment thickness were mapped for each basin. Interpretations were based on information from about 4,700 well records using geochemical, geophysical, geologist's or driller's logs, and from the surficial geology and previously constructed maps and well interpretations. The sedimentary deposits were thickest in the Kittitas Basin reaching a depth of greater than 2,000 ft, followed by successively thinner sedimentary deposits in the Selah basin with about 1,900 ft, Yakima Basin with about 1,800 ft, Toppenish Basin with about 1,200 ft, Benton basin with about 870 ft and Roslyn Basin with about 700 ft.

A process-sedimentary framework for characterizing recent and ancient sabkhas

USGS Publications Warehouse

Handford, C.R.

1981-01-01

The discovery of sabkha environments during the 1960's, marked the beginning of Recent evaporite sedimentological studies and their perception as models for facies analysis. However, variation among Recent sabkhas, though recognized by the geologic community, has not been duly addressed, which has resulted in overuse of the Trucial Coast model in comparative sedimentological studies. Knowledge of the dominant physical processes which determine sabkha morphology, and of the sedimentary response to those processes, can lead to a fundamental understanding of a sabkha's origin and of how it differs from other sabkhas. Physical processes thought to be most important (besides evaporation) include those operative under: (1) marine-; (2) fluvial-lacustrine-; and (3) eolian-dominated conditions. Dominance of one or more of these in the proper settings give rise to marine coastal sabkhas, continental playas, and interdune sabkhas. Sedimentary responses to dominant physical processes lead to the development of sabkhas consisting of a combination of either: (1) terrigenous clastics; (2) carbonate-sulfate (anhydrite-gypsum) minerals; or (3) soluble salts (halite, sylvite, polyhalite, etc.). Sediment characterization can also allow discrimination of the range or compositional variety in, for example, coastal sabkhas. Where applied to the stratigraphic record, this classification system may help unravel the sedimentary history of an ancient sabkha system, and a determination of the dominant physical processes that ruled its development. ?? 1981.

Examining the association of DDX compounds to sedimentary organic matter

NASA Astrophysics Data System (ADS)

Weathers, N.; Rowlett, K.; Geng, Z.; Morrison, A.; White, H. K.

2016-02-01

The association of hydrophobic organic contaminants (HOCs) with sedimentary organic matter (OM) influences their mobility and bioavailability in the environment. Determining whether these associations result from mechanisms such as sorption, chemical binding or encapsulation is critical for predicting their long-term fate. The pesticide DDT (dichlorodiphenyltrichloroethane) has been previously observed to form bound residues with sedimentary OM although the mechanisms of this association are yet to be fully explored. DDT, which was sprayed ubiquitously in the 1950s and early 1960s, can still be found in the environment today along with its three major metabolites, DDE, DDD and DDMU (collectively known as DDX compounds), and therefore presents a unique opportunity to further explore its long-term associations with OM. To this end, a sediment core from a salt marsh in Dover, Delaware known to contain DDX compounds was collected. A maximum concentration of DDX compounds was found at sediment depths corresponding to the time of the widespread usage of DDT. An initial solvent extraction with toluene provided data on the loosely associated DDX fraction followed by subsequent treatments with sulfuric acid and saponification to release DDX that was encapsulated or bound to the sedimentary matrix. Determining the physical disposition of DDX compounds that persist in sediments for several decades is integral to determining the extent to which they are mobile, bioavailable or sequestered in the marsh.

Improving age-depth models using sedimentary proxies for accumulation rates in fluvio-lacustrine deposits

NASA Astrophysics Data System (ADS)

Minderhoud, Philip S. J.; Cohen, Kim M.; Toonen, Willem. H. J.; Erkens, Gilles; Hoek, Wim Z.

2017-04-01

Lacustrine fills, including those of oxbow lakes in river floodplains, often hold valuable sedimentary and biological proxy records of palaeo-environmental change. Precise dating of accumulated sediments at levels throughout these records is crucial for interpretation and correlation of (proxy) data existing within the fills. Typically, dates are gathered from multiple sampled levels and their results are combined in age-depth models to estimate the ages of events identified between the datings. In this paper, a method of age-depth modelling is presented that varies the vertical accumulation rate of the lake fill based on continuous sedimentary data. In between Bayesian calibrated radiocarbon dates, this produces a modified non-linear age-depth relation based on sedimentology rather than linear or spline interpolation. The method is showcased on a core of an infilled palaeomeander at the floodplain edge of the river Rhine near Rheinberg (Germany). The sequence spans from 4.7 to 2.9 ka cal BP and consists of 5.5 meters of laminated lacustrine, organo-clastic mud, covered by 1 meter of peaty clay. Four radiocarbon dates provide direct dating control, mapping and dating in the wider surroundings provide additional control. The laminated, organo-clastic facies of the oxbow fill contains a record of nearby fluvial-geomorphological activity, including meander reconfiguration events and passage of rare large floods, recognized as fluctuations in coarseness and amount of allochthonous clastic sediment input. Continuous along-core sampling and measurement of loss-on-ignition (LOI) provided a fast way of expressing the variation in clastic sedimentation influx from the nearby river versus autochthonous organic deposition derived from biogenic production in the lake itself. This low-cost sedimentary proxy data feeds into the age-depth modelling. The sedimentology-modelled age-depth relation (re)produces the distinct lithological boundaries in the fill as marked changes in

Aquifer Characterization and Groundwater Potential Evaluation in Sedimentary Rock Formation

NASA Astrophysics Data System (ADS)

Ashraf, M. A. M.; Yusoh, R.; Sazalil, M. A.; Abidin, M. H. Z.

2018-04-01

This study was conducted to characterize the aquifer and evaluate the ground water potential in the formation of sedimentary rocks. Electrical resistivity and drilling methods were used to develop subsurface soil profile for determining suitable location for tube well construction. The electrical resistivity method was used to infer the subsurface soil layer by use of three types of arrays, namely, the pole–dipole, Wenner, and Schlumberger arrays. The surveys were conducted using ABEM Terrameter LS System, and the results were analyzed using 2D resistivity inversion program (RES2DINV) software. The survey alignments were performed with maximum electrode spreads of 400 and 800 m by employing two different resistivity survey lines at the targeted zone. The images were presented in the form of 2D resistivity profiles to provide a clear view of the distribution of interbedded sandstone, siltstone, and shale as well as the potential groundwater zones. The potential groundwater zones identified from the resistivity results were confirmed using pumping, step drawdown, and recovery tests. The combination among the three arrays and the correlation between the well log and pumping test are reliable and successful in identifying potential favorable zones for obtaining groundwater in the study area.

Sponges as a complement of sedimentary facies analysis in island deposits of Upper Paraná River

NASA Astrophysics Data System (ADS)

Zviejkovski, I. P.; Stevaux, J. C.; Leli, I. T.; Parolin, M.; Campos, J. B.

2017-11-01

This paper shows the importance of the sponge spicules as complement of sedimentary facies analysis in order to reconstruct the hydrach stages involved in island formation in the Upper Paraná River, Brazil. River in the study reach is anabranching with islands of different sizes covered by typical alluvial forest. We noted that the sponge spicules communities vary according to the changes in the environments involved in the island formation processes. The sponges were identified by their microscleres and gemoscleres in optical microscope as Metania spinata, Oncosclera navicella, Oncosclera jewelli, and possibly the genus Corvoheteromeyenia sp. (Ezcurra de Drago, 1979). By correlating the information coming from the sponges and sedimentary facies, it was possible to identify five phases of the island construction and their respective hydrach stages: 1) bar-island channel (Eupotamic stage), 2) blind channel (Parapotamic stage), 3) lake, 4) swamp (both Paleopotamic stage), and 5) forested island (Terrestrial stage). Using 14C dating and rate of sedimentation, we observed that the development of these five phases took ∼900-1000 years. The data also supported the idea that the forest begin to be formed 134-160 years ago. We concluded that sponge is a strong tool on paleoenvironmetal reconstruction when used with another indicators (in this case the facies analysis) and can be applied other fluvial studies as river management especially for long-term impacted systems (by dams) as those of the Paraná River Basin.

Geothermal resources of California sedimentary basins

USGS Publications Warehouse

Williams, C.F.; Grubb, F.V.; Galanis, S.P.

2004-01-01

The 2004 Department of Energy (DOE) Strategic Plan for geothermal energy calls for expanding the geothermal resource base of the United States to 40,000 MW of electric power generating potential. This will require advances in technologies for exploiting unconventional geothermal resources, including Enhanced Geothermal Systems (EGS) and geopressured geothermal. An investigation of thermal conditions in California sedimentary basins through new temperature and heat flow measurements reveals significant geothermal potential in some areas. In many of the basins, the combined cooling effects of recent tectonic and sedimentary processes result in relatively low (<60 mW/m2) heat flow and geothermal gradients. For example, temperatures in the upper 3 km of San Joaquin, Sacramento and Ventura basins are typically less than 125??C and do not reach 200??c by 5 km. By contrast, in the Cuyama, Santa Maria and western Los Angeles basins, heat flow exceeds 80 mW/m2 and temperatures near or above 200??C occur at 4 to 5 km depth, which represents thermal conditions equivalent to or hotter than those encountered at the Soultz EGS geothermal site in Europe. Although the extractable geothermal energy contained in these basins is not large relative to the major California producing geothermal fields at The Geysers or Salton Sea, the collocation in the Los Angeles basin of a substantial petroleum extraction infrastructure and a major metropolitan area may make it attractive for eventual geothermal development as EGS technology matures.

Seismic velocities within the sedimentary succession of the Canada Basin and southern Alpha-Mendeleev Ridge, Arctic Ocean: evidence for accelerated porosity reduction?

USGS Publications Warehouse

Shimeld, John; Li, Qingmou; Chian, Deping; Lebedeva-Ivanova, Nina; Jackson, Ruth; Mosher, David; Hutchinson, Deborah R.

2016-01-01

The Canada Basin and the southern Alpha-Mendeleev ridge complex underlie a significant proportion of the Arctic Ocean, but the geology of this undrilled and mostly ice-covered frontier is poorly known. New information is encoded in seismic wide-angle reflections and refractions recorded with expendable sonobuoys between 2007 and 2011. Velocity–depth samples within the sedimentary succession are extracted from published analyses for 142 of these records obtained at irregularly spaced stations across an area of 1.9E + 06 km2. The samples are modelled at regional, subregional and station-specific scales using an exponential function of inverse velocity versus depth with regionally representative parameters determined through numerical regression. With this approach, smooth, non-oscillatory velocity–depth profiles can be generated for any desired location in the study area, even where the measurement density is low. Practical application is demonstrated with a map of sedimentary thickness, derived from seismic reflection horizons interpreted in the time domain and depth converted using the velocity–depth profiles for each seismic trace. A thickness of 12–13 km is present beneath both the upper Mackenzie fan and the middle slope off of Alaska, but the sedimentary prism thins more gradually outboard of the latter region. Mapping of the observed-to-predicted velocities reveals coherent geospatial trends associated with five subregions: the Mackenzie fan; the continental slopes beyond the Mackenzie fan; the abyssal plain; the southwestern Canada Basin; and, the Alpha-Mendeleev magnetic domain. Comparison of the subregional velocity–depth models with published borehole data, and interpretation of the station-specific best-fitting model parameters, suggests that sandstone is not a predominant lithology in any of the five subregions. However, the bulk sand-to-shale ratio likely increases towards the Mackenzie fan, and the model for this subregion compares

Seismic velocities within the sedimentary succession of the Canada Basin and southern Alpha-Mendeleev Ridge, Arctic Ocean: evidence for accelerated porosity reduction?

NASA Astrophysics Data System (ADS)

Shimeld, John; Li, Qingmou; Chian, Deping; Lebedeva-Ivanova, Nina; Jackson, Ruth; Mosher, David; Hutchinson, Deborah

2016-01-01

The Canada Basin and the southern Alpha-Mendeleev ridge complex underlie a significant proportion of the Arctic Ocean, but the geology of this undrilled and mostly ice-covered frontier is poorly known. New information is encoded in seismic wide-angle reflections and refractions recorded with expendable sonobuoys between 2007 and 2011. Velocity-depth samples within the sedimentary succession are extracted from published analyses for 142 of these records obtained at irregularly spaced stations across an area of 1.9E + 06 km2. The samples are modelled at regional, subregional and station-specific scales using an exponential function of inverse velocity versus depth with regionally representative parameters determined through numerical regression. With this approach, smooth, non-oscillatory velocity-depth profiles can be generated for any desired location in the study area, even where the measurement density is low. Practical application is demonstrated with a map of sedimentary thickness, derived from seismic reflection horizons interpreted in the time domain and depth converted using the velocity-depth profiles for each seismic trace. A thickness of 12-13 km is present beneath both the upper Mackenzie fan and the middle slope off of Alaska, but the sedimentary prism thins more gradually outboard of the latter region. Mapping of the observed-to-predicted velocities reveals coherent geospatial trends associated with five subregions: the Mackenzie fan; the continental slopes beyond the Mackenzie fan; the abyssal plain; the southwestern Canada Basin; and, the Alpha-Mendeleev magnetic domain. Comparison of the subregional velocity-depth models with published borehole data, and interpretation of the station-specific best-fitting model parameters, suggests that sandstone is not a predominant lithology in any of the five subregions. However, the bulk sand-to-shale ratio likely increases towards the Mackenzie fan, and the model for this subregion compares favourably with

[Distribution Characteristics of Sedimentary Pigments in the Changjiang Estuary and Zhe-Min Coast and its Implications].

PubMed

Li, Dong; Yao, Peng; Zhao, Bin; Wang, Jin-peng; Pan, Hui-hui

2015-08-01

Compositions and contents of sedimentary pigments were examined using high performance liquid chromatography in order to discuss the spatial distributions of phytoplankton primary production, phytoplankton functional type and the preservation efficiency of phytoplankton pigments and their influencing factors. The results showed that: chloropigments [Chlorins, including chlorophyll-a (Chl-a) and pheopigments (Pheo-a), such as pheophytin-a (PHtin-a), pheophorbide-a (PHide-a), pPheophytin-a (pPHtin-a), sterol chlorin esters (SCEs) and carotenol chlorin esters (CCEs)] were the major type of sedimentary pigments. The nutrients inputs from Changjiang Diluted Water and upwelling in the Zhe-Min coastal mud area were the major cause for the patchy distribution with high sedimentary chloropigment contents. Carotenoid contents showed no trending changes and exhibited high values in the Changjiang Estuary and Zhe-Min Coasts. Based on the relative proportions of each diagnostic carotenoid to the total diagnostic carotenoids in the sediments, the relative contributions of diatoms, dinoflagellates, prymnesiophytes, prasinophytes, cryptophytes and cyanobacterias in the phytoplankton fuctional types were 48.8% +/- 17.4%, 10.7% +/- 11.5%, 8.1% +/- 7.2%, 18.6% +/- 8.2%, 9.4% +/- 6.4% and 4.3% +/- 3.2%, respectively. The preference for external environmental conditions (e.g., nutrient level and water salinity) was the main cause for the decreasing trends of diatoms and dinoflagellates proportions and the increasing trends of prasinophytes, cryptophytes and cyanobacterias seawards. Based on the spatial distribution of Chl-a/Pheo-a ratios, the higher preservation efficiencies of sedimentary pigments in the coastal regions (e.g., outer edge of maximum turbidity zone in the Changjiang Estuary, mouth of the Hangzhou Bay and upwelling region in the Zhe-Min Coast) were mainly due to the higher sedimentation rate and seasonal occurrences of hypoxia in bottom water, and these regions with

40 CFR 148.18 - Waste specific prohibitions-newly listed and identified wastes.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 22 2010-07-01 2010-07-01 false Waste specific prohibitions-newly listed and identified wastes. 148.18 Section 148.18 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) WATER PROGRAMS (CONTINUED) HAZARDOUS WASTE INJECTION RESTRICTIONS Prohibitions on...

Sedimentary record of erg migration

NASA Astrophysics Data System (ADS)

Porter, M. L.

1986-06-01

The sedimentary record of erg (eolian sand sea) migration consists of an idealized threefold division of sand-sea facies sequences. The basal division, here termed the fore-erg, is composed of a hierarchy of eolian sand bodies contained within sediments of the flanking depositional environment. These sand bodies consist of eolian strata deposited by small dune complexes, zibars, and sand sheets. The fore-erg represents the downwind, leading edge of the erg and records the onset of eolian sedimentation. Basin subsidence coupled with erg migration places the medial division, termed the central erg, over the fore-erg strata. The central erg, represented by a thick accumulation of large-scale, cross-stratified sandstone, is the product of large draa complexes. Eolian influence on regional sedimentation patterns is greatest in the central erg, and most of the sand transported and deposited in the erg is contained within this region. Reduction in sand supply and continued erg migration will cover the central-erg deposits with a veneer of back-erg deposits. This upper division of the erg facies sequence resembles closely the fore-erg region. Similar types of eolian strata are present and organized in sand bodies encased in sediments of the upwind flanking depositional environment(s). Back-erg deposits may be thin due to limited eolian influence on sedimentation or incomplete erg migration, or they may be completely absent because of great susceptibility to postdepositional erosion. Tectonic, climatic, and eustatic influences on sand-sea deposition will produce distinctive variations or modifications of the idealized erg facies sequence. The resulting variants in the sedimentary record of erg migration are illustrated with ancient examples from western North America, Europe, southern Africa, and South America.

Microbially mediated carbon cycling as a control on the δ 13C of sedimentary carbon in eutrophic Lake Mendota (USA): new models for interpreting isotopic excursions in the sedimentary record

NASA Astrophysics Data System (ADS)

Hollander, David J.; Smith, Michael A.

2001-12-01

An isotopic study of various carbon phases in eutrophic Lake Mendota (Wisconsin, USA) indicates that the δ13C composition of sedimentary organic and inorganic carbon has become more negative in response to increasing microbially mediated carbon cycling and processes associated with the intensification of seasonal and long-term eutrophication. Progressive increases in the contributions of isotopically depleted chemoautotrophic and methanotrophic biomass (reflected in the -40 to -90‰ values of hopanols and FAMES), attributed to seasonal and long-term increases in production and expansion of the anaerobic water mass, accounts for carbon isotopic trends towards depleted δ13C values observed in both seasonal varves and over the past 100 years. Changes in the intensities of certain microbial processes are also evident in the sedimentary geochemical record. During the period of most intense cultural eutrophication, when the oxic-anoxic interface was located close to the surface, methanogenesis/methanotrophy and the oxidation of biogenic methane increased to the extent that significant quantities of 13C-depleted CO2 were added into the epilimnion. This depleted CO2 was subsequently utilized by phytoplankton and incorporated into CaCO3 during biogenically induced calcite precipitation. A comparative study between eutrophic Lakes Mendota and Greifen, further indicate that the extent of nutrient loading in the epilimnion determines whether the δ13C record of sedimentary organic carbon reflects intensification of microbial processes in the hypolimnion and sediments, or changes in the primary productivity in the photic zone. From this comparison, a series of eutrophication models are developed to describe progressive transitions through thresholds of microbial and eukaryotic productivity and their influence on the δ13C record of sedimentary carbon. With increasing eutrophication, the models initially predict a negative and then a subsequent positive carbon isotopic

Toward identifying specification requirements for digital bone-anchored prosthesis design incorporating substructure fabrication: a pilot study.

PubMed

Eggbeer, Dominic; Bibb, Richard; Evans, Peter

2006-01-01

This paper is the first in a series that aims to identify the specification requirements for advanced digital technologies that may be used to design and fabricate complex, soft tissue facial prostheses. Following a review of previously reported techniques, appropriate and currently available technologies were selected and applied in a pilot study. This study uses a range of optical surface scanning, computerized tomography, computer-aided design, and rapid prototyping technologies to capture, design, and fabricate a bone-anchored auricular prosthesis, including the retentive components. The techniques are assessed in terms of their effectiveness, and the results are used to identify future research and specification requirements to direct developments. The case study identifies that while digital technologies may be used to design implant-retained facial prostheses, many limitations need to be addressed to make the techniques clinically viable. It also identifies the need to develop a more robust specification that covers areas such as resolution, accuracy, materials, and design, against which potential technologies may be assessed. There is a need to develop a specification against which potential technologies may be assessed for their suitability in soft tissue facial prosthetics. The specification will be developed using further experimental research studies.

Distribution and sedimentary characteristics of tsunami deposits along the Cascadia margin of western North America

USGS Publications Warehouse

Peters, R.; Jaffe, B.; Gelfenbaum, G.

2007-01-01

Tsunami deposits have been found at more than 60 sites along the Cascadia margin of Western North America, and here we review and synthesize their distribution and sedimentary characteristics based on the published record. Cascadia tsunami deposits are best preserved, and most easily identified, in low-energy coastal environments such as tidal marshes, back-barrier marshes and coastal lakes where they occur as anomalous layers of sand within peat and mud. They extend up to a kilometer inland in open coastal settings and several kilometers up river valleys. They are distinguished from other sediments by a combination of sedimentary character and stratigraphic context. Recurrence intervals range from 300-1000??years with an average of 500-600??years. The tsunami deposits have been used to help evaluate and mitigate tsunami hazards in Cascadia. They show that the Cascadia subduction zone is prone to great earthquakes that generate large tsunamis. The inclusion of tsunami deposits on inundation maps, used in conjunction with results from inundation models, allows a more accurate assessment of areas subject to tsunami inundation. The application of sediment transport models can help estimate tsunami flow velocity and wave height, parameters which are necessary to help establish evacuation routes and plan development in tsunami prone areas. ?? 2007.

Copper Deposits in Sedimentary and Volcanogenic Rocks

USGS Publications Warehouse

Tourtelot, Elizabeth B.; Vine, James David

1976-01-01

Copper deposits occur in sedimentary and volcanogenic rocks within a wide variety of geologic environments where there may be little or no evidence of hydrothermal alteration. Some deposits may be hypogene and have a deep-seated source for the ore fluids, but because of rapid cooling and dilution during syngenetic deposition on the ocean floor, the resulting deposits are not associated with hydrothermal alteration. Many of these deposits are formed at or near major tectonic features on the Earth's crust, including plate boundaries, rift valleys, and island arcs. The resulting ore bodies may be stratabound and either massive or disseminated. Other deposits form in rocks deposited in shallow-marine, deltaic, and nonmarine environments by the movement and reaction of interstratal brines whose metal content is derived from buried sedimentary and volcanic rocks. Some of the world's largest copper deposits were probably formed in this manner. This process we regard as diagenetic, but some would regard it as syngenetic, if the ore metals are derived from disseminated metal in the host-rock sequence, and others would regard the process as epigenetic, if there is demonstrable evidence of ore cutting across bedding. Because the oxidation associated with diagenetic red beds releases copper to ground-water solutions, red rocks and copper deposits are commonly associated. However, the ultimate size, shape, and mineral zoning of a deposit result from local conditions at the site of deposition - a logjam in fluvial channel sandstone may result in an irregular tabular body of limited size; a petroleum-water interface in an oil pool may result in a copper deposit limited by the size and shape of the petroleum reservoir; a persistent thin bed of black shale may result in a copper deposit the size and shape of that single bed. The process of supergene enrichment has been largely overlooked in descriptions of copper deposits in sedimentary rocks. However, supergene processes may be

Sedimentary Records of the Paleohurricane Activity in the Bahamas

NASA Astrophysics Data System (ADS)

Wallace, E. J.; Donnelly, J. P.; Wiman, C.; Cashman, M.

2015-12-01

Hurricanes pose a threat to human lives and can cause significant destruction of coastal areas. This threat has become more pronounced with recent rises in sea level and coastal populations. Currently, there is a large degree of uncertainty surrounding future changes in tropical cyclone activity. This is due to the limitations of climate models as well as the scarcity and unreliability of the current observational record. With so much uncertainty surrounding the current projections of hurricane activity, it is crucial to establish a longer and more accurate historical record. This study uses sediment cores extracted from blueholes in the Bahamas to develop a record of intense hurricane landfalls in the region dating back more than a millennia. The collected cores were sectioned, split, and scanned on an X-ray fluorescence scanner to obtain a high resolution core profile of the sediments' elemental composition and to identify potential sedimentary structures. Age control of the samples was determined using radiocarbon dating, coarse fraction was measured every centimeter, and hurricane event bed frequency was established for each core. We assess the statistical significance of the patterns observed in the sedimentary record using a coupled ocean-atmosphere hurricane model to simulate storms representative of modern climatology. Cores extracted from two blue holes near South Andros Island provide approximately a 1600 year and a 600 year record respectively, with sedimentation rates exceeding 1 cm/year. Both records contain coarse grained event deposits that correlate with known historical intense hurricane strikes in the Bahamas within age uncertainties. The 1600 year record confirms previous hurricane reconstructions from the Caribbean indicating higher tropical cyclone activity from 500 to 1400 CE. In addition, these new high-resolution records indicate elevated intense hurricane activity in the 17th and 18th centuries CE, when activity is also elevated in lower

Sedimentary basins reconnaissance using the magnetic Tilt-Depth method

USGS Publications Warehouse

Salem, A.; Williams, S.; Samson, E.; Fairhead, D.; Ravat, D.; Blakely, R.J.

2010-01-01

We compute the depth to the top of magnetic basement using the Tilt-Depth method from the best available magnetic anomaly grids covering the continental USA and Australia. For the USA, the Tilt-Depth estimates were compared with sediment thicknesses based on drilling data and show a correlation of 0.86 between the datasets. If random data were used then the correlation value goes to virtually zero. There is little to no lateral offset of the depth of basinal features although there is a tendency for the Tilt-Depth results to be slightly shallower than the drill depths. We also applied the Tilt-Depth method to a local-scale, relatively high-resolution aeromagnetic survey over the Olympic Peninsula of Washington State. The Tilt-Depth method successfully identified a variety of important tectonic elements known from geological mapping. Of particular interest, the Tilt-Depth method illuminated deep (3km) contacts within the non-magnetic sedimentary core of the Olympic Mountains, where magnetic anomalies are subdued and low in amplitude. For Australia, the Tilt-Depth estimates also give a good correlation with known areas of shallow basement and sedimentary basins. Our estimates of basement depth are not restricted to regional analysis but work equally well at the micro scale (basin scale) with depth estimates agreeing well with drill hole and seismic data. We focus on the eastern Officer Basin as an example of basin scale studies and find a good level of agreement between previously-derived basin models. However, our study potentially reveals depocentres not previously mapped due to the sparse distribution of well data. This example thus shows the potential additional advantage of the method in geological interpretation. The success of this study suggests that the Tilt-Depth method is useful in estimating the depth to crystalline basement when appropriate quality aeromagnetic anomaly data are used (i.e. line spacing on the order of or less than the expected depth to

Revisiting the effects of hydrodynamic sorting and sedimentary recycling on chemical weathering indices

NASA Astrophysics Data System (ADS)

Guo, Yulong; Yang, Shouye; Su, Ni; Li, Chao; Yin, Ping; Wang, Zhongbo

2018-04-01

Although the proxies based on elemental geochemistry of siliciclastic sediments have been well developed to indicate the intensity of chemical weathering in various catchments, their geological indications and limitations, and especially how the differentiation of minerals and sediment grain size influences the applications of these proxies needs more clarification. This paper investigates the interactive effects of weathering, hydraulic sorting and sedimentary recycling on river sediment chemistry, and further validates the application of various weathering indices by measuring mineralogical and geochemical compositions of bank sediments and suspended particulate matters (SPMs) from five rivers in East China bearing various sizes, geologic settings and climatic regimes. For a specific river, the silicate weathering intensity registered in the fine SPMs is systematically stronger than that in the coarse-grained bank sediments. Most of the weathering indices not only reflect the integrated weathering history of various catchments but also depend on hydraulic sorting effect during sediment transport and depositional processes. The correlation between CIA (chemical index of alteration) and WIP (weathering index of Parker) offers an approach to predict the weathering trends of the fine SPMs, coarse bank sediments and recycled sediments under the influence of quartz dilution. To minimize the effects of hydrodynamic sorting and sedimentary recycling, we suggest that the fine sediments (e.g. SPMs and <2 μm fraction of bank sediments) in rivers can better reflect the average of present-day weathering crust in catchments and the weathered terrigenous materials into marginal seas and oceans.

Sedimentary Carbon Stocks: A National Assessment of Scotland's Fjords.

NASA Astrophysics Data System (ADS)

Smeaton, Craig; Austin, William; Davies, Althea; Howe, John

2017-04-01

Coastal sediments have been shown to be globally significant repositories for carbon (C) with an estimated 126.2 Tg of C being buried annually (Duarte et al. 2005). Though it is clear these areas are important for the long-term storage of C the actual quantity of C held within coastal sediment remains largely unaccounted for. The first step to understanding the role the coastal ocean plays in the global C cycle is to quantify the C held within these coastal sediments. Of the different coastal environment fjords have been shown to be hotspots for C burial with approximately 11 % of the annual global marine carbon sequestration occurring within fjordic environments (Smith et al. 2015). Through the development of a joint geophysical and geochemical methodology we estimated that the sediment in a mid-latitude fjord holds 26.9 ± 0.5 Mt of C (Smeaton et al., 2016), with these results suggesting that Scottish mid-latitude fjords could be a significant unaccounted store of C equivalent to their terrestrial counterparts (i.e. peatlands). Through the application of the joint geophysical and geochemical methodology developed by Smeaton et al (2016) to a number of other mid-latitude fjords, we will create detailed estimations of the sedimentary C stored at these individual sites. Using these detailed C stock estimations in conjunction with upscaling techniques we will establish the first national estimation of fjordic sedimentary C stocks. The data produced will allow for the sedimentary C stocks to be compared to other national C stocks, such as the Scottish peatlands (Chapman et al. 2009) and forestry (Forestry Commission, 2016). Alongside quantifying this large unaccounted for store of C in the coastal ocean this work also lays foundations for future work to understand the role of the coastal ocean in the global C cycle. Duarte, C. M., Middelburg, J. J., and Caraco, N.: Major role of marine vegetation on the oceanic carbon cycle, Biogeosciences, 2, 1-8, doi:10.5194/bg-2

PD-1 identifies the patient-specific CD8+ tumor-reactive repertoire infiltrating human tumors

PubMed Central

Gros, Alena; Robbins, Paul F.; Yao, Xin; Li, Yong F.; Turcotte, Simon; Tran, Eric; Wunderlich, John R.; Mixon, Arnold; Farid, Shawn; Dudley, Mark E.; Hanada, Ken-ichi; Almeida, Jorge R.; Darko, Sam; Douek, Daniel C.; Yang, James C.; Rosenberg, Steven A.

2014-01-01

Adoptive transfer of tumor-infiltrating lymphocytes (TILs) can mediate regression of metastatic melanoma; however, TILs are a heterogeneous population, and there are no effective markers to specifically identify and select the repertoire of tumor-reactive and mutation-specific CD8+ lymphocytes. The lack of biomarkers limits the ability to study these cells and develop strategies to enhance clinical efficacy and extend this therapy to other malignancies. Here, we evaluated unique phenotypic traits of CD8+ TILs and TCR β chain (TCRβ) clonotypic frequency in melanoma tumors to identify patient-specific repertoires of tumor-reactive CD8+ lymphocytes. In all 6 tumors studied, expression of the inhibitory receptors programmed cell death 1 (PD-1; also known as CD279), lymphocyte-activation gene 3 (LAG-3; also known as CD223), and T cell immunoglobulin and mucin domain 3 (TIM-3) on CD8+ TILs identified the autologous tumor-reactive repertoire, including mutated neoantigen-specific CD8+ lymphocytes, whereas only a fraction of the tumor-reactive population expressed the costimulatory receptor 4-1BB (also known as CD137). TCRβ deep sequencing revealed oligoclonal expansion of specific TCRβ clonotypes in CD8+PD-1+ compared with CD8+PD-1– TIL populations. Furthermore, the most highly expanded TCRβ clonotypes in the CD8+ and the CD8+PD-1+ populations recognized the autologous tumor and included clonotypes targeting mutated antigens. Thus, in addition to the well-documented negative regulatory role of PD-1 in T cells, our findings demonstrate that PD-1 expression on CD8+ TILs also accurately identifies the repertoire of clonally expanded tumor-reactive cells and reveal a dual importance of PD-1 expression in the tumor microenvironment. PMID:24667641

Using Aluminum Foil to Record Structures in Sedimentary Rock.

ERIC Educational Resources Information Center

Metz, Robert

1982-01-01

Aluminum foil can be used to make impressions of structures preserved in sedimentary rock. The impressions can be projected onto a screen, photographed, or a Plaster of Paris model can be made from them. Impressions of ripple marks, mudcracks, and raindrop impressions are provided in photographs illustrating the technique. (Author/JN)

Sea-floor morphology and sedimentary environments in southern Narragansett Bay, Rhode Island

USGS Publications Warehouse

McMullen, Katherine Y.; Poppe, Lawrence J.; Blackwood, Dann S.; Nardi, Matthew J.; Andring, Matthew A.

2015-09-09

Multibeam echosounder data collected by the National Oceanic and Atmospheric Administration along with sediment samples and still and video photography of the sea floor collected by the U.S. Geological Survey were used to interpret sea-floor features and sedimentary environments in southern Narragansett Bay, Rhode Island, as part of a long-term effort to map the sea floor along the northeastern coast of the United States. Sea-floor features include rocky areas and scour depressions in high-energy environments characterized by erosion or nondeposition, and sand waves and megaripples in environments characterized by coarse-grained bedload transport. Two shipwrecks are also located in the study area. Much of the sea floor is relatively featureless within the resolution of the multibeam data; sedimentary environments in these areas are characterized by processes associated with sorting and reworking. This report releases bathymetric data from the multibeam echosounder, grain-size analyses of sediment samples, and photographs of the sea floor and interpretations of the sea-floor features and sedimentary environments. It provides base maps that can be used for resource management and studies of topics such as benthic ecology, contaminant inventories, and sediment transport.

Modern sedimentary environments on the Rhode Island inner shelf, off the eastern United States

USGS Publications Warehouse

Knebel, H.J.; Needell, S. W.; O'Hara, C. J.

1982-01-01

Analyses of side-scan sonar records along with previously published bathymetric, textural and subbottom data reveal the sedimentary environments on the inner Continental Shelf south of Narragansett Bay, Rhode Island. The bottom topography in this area is characterized by a broad central depression bordered by shallow, irregular sea floor on the north and east and by a discontinuous, curvilinear ridge on the south and west. Four distinct environments were identified: 1. (1) Pre-Mesozoic coastal rocks are exposed on the sea floor at isolated locations near the shore (waterdepths <32 m). These exposures have pronounced, irregular topographic relief and produce blotchy patterns on side-scan sonographs. 2. (2) Glacial moraine deposits form the discontinuous offshore ridge. These deposits have hummocky sea-floor relief, are covered by lag gravel and boudlers, and appear as predominantly black (strongly reflective) patterns on the side-scan records. 3. (3) Over most of the shallow, irregular bottom in the northeast, on the flanks of the morainal ridge, and atop bathymetric highs, the sea floor is characterized as a mosaic of light and dark patches and lineations. The dark (more reflective) zones are areas of coarse sands and megaripples (wavelengths = 0.8-1.2 m that either have no detectable relief or are slightly depressed relative to surrounding (light) areas of finer-grained sands. 4. (4) Smooth beds that produce nearly featureless patterns on the sonographs occupy the broad central bathymetric depression as well as smaller depressions north and east of Block Island. Within the broad depression, sonographs having practically no shading indicate a central zone of modern sandy silt, whereas records having moderate tonality define a peripheral belt of silty sand. The sedimentary environments that are outlined range from erosional or non-depositional (bedrock, glacial moraine) to depositional (featureless beds), and include areas that may reflect a combination of erosional

Geothermal Target Areas in Colorado as Identified by Remote Sensing Techniques

DOE Data Explorer

Khalid Hussein

2012-02-01

This layer contains the areas identified as targets of potential geothermal activity. The Criteria used to identify the target areas include: hot/warm surface exposures modeled from ASTER/Landsat satellite imagery and geological characteristics, alteration mineral commonly associated with hot springs (clays, Si, and FeOx) modeled from ASTER and Landsat data, Colorado Geological Survey (CGS) known thermal hot springs/wells and heat-flow data points, Colorado deep-seated fault zones, weakened basement identified from isostatic gravity data, and Colorado sedimentary and topographic characteristics.

Identifying content for the glaucoma-specific item bank to measure quality-of-life parameters.

PubMed

Khadka, Jyoti; McAlinden, Colm; Craig, Jamie E; Fenwick, Eva K; Lamoureux, Ecosse L; Pesudovs, Konrad

2015-01-01

Patient-reported outcomes (PROs) have become essential clinical trial end points. However, a comprehensive, multidimensional, patient-relevant, and precise glaucoma-specific PRO instrument is not available. Therefore, the purpose of this study was to identify content for a new, glaucoma-specific, quality-of-life (QOL) item bank. Content identification was undertaken in 5 phases: (1) identification of extant items in glaucoma-specific instruments and the qualitative literature; (2) focus groups and interviews with glaucoma patients; (3) item classification and selection; (4) expert review and revision of items; and (5) cognitive interviews with patients. A total of 737 unique items (extant items from PRO instruments, 247; qualitative articles, 14 items; focus groups and semistructured interviews, 476 items) were identified. These items were classified into 10 QOL domains. Four criteria (item redundancy, item inconsistent with domain definition, item content too narrow to have wider applicability, and item clarity) were used to remove and refine the items. After the cognitive interviews, the final minimally representative item set had a total of 342 unique items belonging to 10 domains: activity limitation (88), mobility (20), visual symptoms (19), ocular surface symptoms (22), general symptoms (15), convenience (39), health concerns (45), emotional well-being (49), social issues (23), and economic issues (22). The systematic content identification process identified 10 QOL domains, which were important to patients with glaucoma. The majority of the items were identified from the patient-specific focus groups and semistructured interviews suggesting that the existing PRO instruments do not adequately address QOL issues relevant to individuals with glaucoma.

Mantle convective support, drainage patterns and sedimentary flux: Examples from the West Africa passive margin

NASA Astrophysics Data System (ADS)

Lodhia, B. H.; Roberts, G. G.; Fraser, A.; Goes, S. D. B.; Fishwick, S.; Jarvis, J.

2017-12-01

Sedimentary flux measurements, regional subsidence patterns, inversion of drainage patterns, tomographic models and simple isostatic calculations are combined to constrain the history of sub-plate support of North West Africa. Backstripping of 8 commercial wells and mapping of 53,000 line-km of 2D seismic reflection data show that rapid ( 0.03 mm a-1) Neogene-Recent subsidence occurred in a 500 x 500 km region offshore Mauritania. 0.4-0.8 km of water-loaded subsidence occurred in the center of the basin during the last 23 Ma. Salt withdrawal, thin-skinned tectonics, glacio-eustasy and flexure of the lithosphere due to the emplacement of Cape Verde cannot explain the timing or magnitude of this phase of subsidence. Instead, conversion of shear wave velocities into temperature and simple isostatic calculations indicate that asthenospheric temperatures determine bathymetry from Cape Verde to West Africa. Our results indicate that asthenospheric flow from Cape Verde to Mauritania generated a bathymetric gradient of 1/300 at a wavelength of 103 km during the last 23 Ma. We explore the relationship between uplift and erosion onshore and measured solid sedimentary flux offshore. First, the history of sedimentary flux to the margin was determined by depth-converting and decompacting biostratigraphically-dated isopachs. Compaction and velocity errors, determined using check-shot data, were propagated into calculated sedimentary flux history. Solid-sedimentary flux rates of 0.2-0.1+0.2 ×103 km3 /Ma between 23.8-5.6 Ma, and 1.9-1.4+2.0 ×103 km3 /Ma from 5.6-0 Ma are observed. Secondly, a calibrated stream power erosional model was used to invert 14700 river profiles for a history of regional uplift rate. Incision rates were integrated along best-fitting theoretical river profiles to predict sedimentary flux at mouths of the rivers draining NW Africa. Our predicted history of sedimentary flux increases in two stages towards the present-day, in agreement with our offshore

Sedimentary characteristics and depositional model of a Paleocene-Eocene salt lake in the Jiangling Depression, China

NASA Astrophysics Data System (ADS)

Yu, Xiaocan; Wang, Chunlian; Liu, Chenglin; Zhang, Zhaochong; Xu, Haiming; Huang, Hua; Xie, Tengxiao; Li, Haonan; Liu, Jinlei

2015-11-01

We studied the sedimentary characteristics of a Paleocene-Eocene salt lake in the Jiangling Depression through field core observation, thin section identification, scanning electron microscopy, and X-ray diffraction analysis. On the basis of sedimentary characteristics we have summarized the petrological and mineralogical characteristics of the salt lake and proposed 9 types of grade IV salt rhythms. The deposition shows a desalting to salting order of halite-argillaceous-mudstone-mud dolostonemud anhydrock-glauberite-halite. The relationship among grade IV rhythms, water salinity and climate fluctuations was analyzed. Based on the analysis of the relationship between boron content and mudstone color and by combining the mineralogy and sedimentary environment characteristics, we propose that the early and late Paleocene Shashi Formation in the Jiangling Depression was a paleolacustrine depositional environment with a high salt content, which is a representation of the shallow water salt lake depositional model. The middle Paleocene Shashi Formation and the early Eocene Xingouzui Formation were salt and brackish sedimentary environments with low salt content in a deep paleolake, which represents a deep salt lake depositional model.

Reconstructed Oceanic Sedimentary Sequence in the Cape Three Points Area, Southern Axim-Konongo (Ashanti) Greenstone Belt in the Paleoproterozoic Birimian of Ghana.

NASA Astrophysics Data System (ADS)

Kiyokawa, S.; Ito, T.; Frank, N. K.; George, T. M.

2014-12-01

The Birimian greenstone belt likely formed through collision between the West African and Congo Cratons ~2.2 Ga. Accreted greenstone belts that formed through collision especially during the Palaeoproterozoic are usually not only good targets for preservation of oceanic sedimentary sequences but also greatly help understand the nature of the Paleoproterozoic deeper oceanic environments. In this study, we focused on the coastal area around Cape Three Points at the southernmost part of the Axim-Konongo (Ashanti) greenstone belt in Ghana where excellently preserved Paleoprotrozoic deeper oceanic sedimentary sequences extensively outcrop. The Birimian greenstone belt in both the Birimian rock (partly Sefwi Group) and Ashanti belts are separated from the Tarkwaian Group which is a paleoplacer deposit (Perrouty et al., 2012). The Birimian rock was identified as volcanic rich greenstone belt; Kumasi Group is foreland basin with shale and sandstone, quartzite and turbidite derived from 2.1 Ga granite in the Birimian; Tarkwaian Group is composed of coarse detrital sedimentary rocks deposited along a strike-slip fault in the Birimian. In the eastern part of the Cape Three Point area, over 4km long of volcanic-sedimentary sequence outcrops and is affected by greenschist facies metamorphism. Four demarcated zones along the coast as Kutike, Atwepo, Kwtakor and Akodaa zones. The boundaries of each zone were not observed, but each zone displays a well preserved and continuous sedimentary sequence. Structurally, this region is west vergent structure and younging direction to the East. Kutike zone exhibits synform structure with S0 younging direction. Provisional stratigraphic columns in all the zones total about 500m thick. Kutike, Atwepo zones (> 200m thick) have coarsening upward characteristics from black shale to bedded volcanic sandstone. Kwtakor zone (> 150m) is the thickest volcaniclastic sequence and has fining upward sections. Akodaa zone (> 150m) consists of finer bed of

Space Station Views of African Sedimentary Basins-Analogs for Subsurface Patterns

NASA Technical Reports Server (NTRS)

Wilkinson, M. Justin

2007-01-01

Views of African sedimentary basins from the International Space Station (ISS) is presented. The images from ISS include: 1) Inland deltas; 2) Prediction; 3) Significance; 4) Exploration applications; and 5) Coastal megafans

Identifying States along the Hematopoietic Stem Cell Differentiation Hierarchy with Single Cell Specificity via Raman Spectroscopy.

PubMed

Ilin, Yelena; Choi, Ji Sun; Harley, Brendan A C; Kraft, Mary L

2015-11-17

A major challenge for expanding specific types of hematopoietic cells ex vivo for the treatment of blood cell pathologies is identifying the combinations of cellular and matrix cues that direct hematopoietic stem cells (HSC) to self-renew or differentiate into cell populations ex vivo. Microscale screening platforms enable minimizing the number of rare HSCs required to screen the effects of numerous cues on HSC fate decisions. These platforms create a strong demand for label-free methods that accurately identify the fate decisions of individual hematopoietic cells at specific locations on the platform. We demonstrate the capacity to identify discrete cells along the HSC differentiation hierarchy via multivariate analysis of Raman spectra. Notably, cell state identification is accurate for individual cells and independent of the biophysical properties of the functionalized polyacrylamide gels upon which these cells are cultured. We report partial least-squares discriminant analysis (PLS-DA) models of single cell Raman spectra enable identifying four dissimilar hematopoietic cell populations across the HSC lineage specification. Successful discrimination was obtained for a population enriched for long-term repopulating HSCs (LT-HSCs) versus their more differentiated progeny, including closely related short-term repopulating HSCs (ST-HSCs) and fully differentiated lymphoid (B cells) and myeloid (granulocytes) cells. The lineage-specific differentiation states of cells from these four subpopulations were accurately identified independent of the stiffness of the underlying biomaterial substrate, indicating subtle spectral variations that discriminated these populations were not masked by features from the culture substrate. This approach enables identifying the lineage-specific differentiation stages of hematopoietic cells on biomaterial substrates of differing composition and may facilitate correlating hematopoietic cell fate decisions with the extrinsic cues that

Mining the Immune Cell Proteome to Identify Ovarian Cancer-Specific Biomarkers

DTIC Science & Technology

2012-03-01

data and are in the process of identifying gene signatures that can be used as biomarkers for the identification of ovarian cancer-specific biomarkers...groups. The groups showed significant difference in age as well as gestational age, which is expected when considering the disease process . Isolation of...MUC4 in intracellular signaling.32 Oligosaccharides attached to the extracellular domains of mucins have also been shown to interact with different

Comparative Transcriptional Profiling of the Axolotl Limb Identifies a Tripartite Regeneration-Specific Gene Program

PubMed Central

Knapp, Dunja; Schulz, Herbert; Rascon, Cynthia Alexander; Volkmer, Michael; Scholz, Juliane; Nacu, Eugen; Le, Mu; Novozhilov, Sergey; Tazaki, Akira; Protze, Stephanie; Jacob, Tina; Hubner, Norbert; Habermann, Bianca; Tanaka, Elly M.

2013-01-01

Understanding how the limb blastema is established after the initial wound healing response is an important aspect of regeneration research. Here we performed parallel expression profile time courses of healing lateral wounds versus amputated limbs in axolotl. This comparison between wound healing and regeneration allowed us to identify amputation-specific genes. By clustering the expression profiles of these samples, we could detect three distinguishable phases of gene expression – early wound healing followed by a transition-phase leading to establishment of the limb development program, which correspond to the three phases of limb regeneration that had been defined by morphological criteria. By focusing on the transition-phase, we identified 93 strictly amputation-associated genes many of which are implicated in oxidative-stress response, chromatin modification, epithelial development or limb development. We further classified the genes based on whether they were or were not significantly expressed in the developing limb bud. The specific localization of 53 selected candidates within the blastema was investigated by in situ hybridization. In summary, we identified a set of genes that are expressed specifically during regeneration and are therefore, likely candidates for the regulation of blastema formation. PMID:23658691

Hydrograph Separations can Identify Contaminant-Specific Pathways for Conservation Targeting in a Tile-Drained Watershed

USDA-ARS?s Scientific Manuscript database

Water quality issues continue to vex agriculture. Understanding contaminant-specific pathways could help clarify effective water quality management strategies in watersheds. Hypothesis: If conducted at nested scales, hydrograph separation techniques can identify contaminant-specific pathways that co...

The Effect of Sedimentary Basins on Through-Passing Short-Period Surface Waves

NASA Astrophysics Data System (ADS)

Feng, L.; Ritzwoller, M. H.

2017-12-01

Surface waves propagating through sedimentary basins undergo elastic wave field complications that include multiple scattering, amplification, the formation of secondary wave fronts, and subsequent wave front healing. Unless these effects are accounted for accurately, they may introduce systematic bias to estimates of source characteristics, the inference of the anelastic structure of the Earth, and ground motion predictions for hazard assessment. Most studies of the effects of basins on surface waves have centered on waves inside the basins. In contrast, we investigate wave field effects downstream from sedimentary basins, with particular emphasis on continental basins and propagation paths, elastic structural heterogeneity, and Rayleigh waves at 10 s period. Based on wave field simulations through a recent 3D crustal and upper mantle model of East Asia, we demonstrate significant Rayleigh wave amplification downstream from sedimentary basins in eastern China such that Ms measurements obtained on the simulated wave field vary by more than a magnitude unit. We show that surface wave amplification caused by basins results predominantly from elastic focusing and that amplification effects produced through 3D basin models are reproduced using 2D membrane wave simulations through an appropriately defined phase velocity map. The principal characteristics of elastic focusing in both 2D and 3D simulations include (1) retardation of the wave front inside the basins; (2) deflection of the wave propagation direction; (3) formation of a high amplitude lineation directly downstream from the basin bracketed by two low amplitude zones; and (4) formation of a secondary wave front. Finally, by comparing the impact of elastic focusing with anelastic attenuation, we argue that on-continent sedimentary basins are expected to affect surface wave amplitudes more strongly through elastic focusing than through the anelastic attenuation.

Aeolian sedimentary processes at the Bagnold Dunes, Mars: Implications for modern dune dynamics and sedimentary structures in the aeolian stratigraphic record of Mars

NASA Astrophysics Data System (ADS)

Ewing, Ryan C.; Bridges, Nathan T.; Sullivan, Rob; Lapotre, Mathieu G. A.; Fischer, Woodward W.; Lamb, Mike P.; Rubin, David M.; Lewis, Kevin W.; Gupta, Sanjeev

2016-04-01

Wind-blown sand dunes are ubiquitous on the surface of Mars and are a recognized component of the martian stratigraphic record. Our current knowledge of the aeolian sedimentary processes that determine dune morphology, drive dune dynamics, and create aeolian cross-stratification are based upon orbital studies of ripple and dune morphodynamics, rover observations of stratification on Mars, Earth analogs, and experimental and theoretical studies of sand movement under Martian conditions. In-situ observations of sand dunes (informally called the Bagnold Dunes) by Curiosity Rover in Gale Crater, Mars provide the first opportunity to make observations of dunes from the grain-to-dune scale thereby filling the gap in knowledge between theory and orbital observations and refining our understanding of the martian aeolian stratigraphic record. We use the suite of cameras on Curiosity, including Navigation Camera (Navcam), Mast Camera (Mastcam) and Mars Hand Lens Imager (MAHLI), to make observations of the Bagnold Dunes. Measurements of sedimentary structures are made where stereo images are available. Observations indicate that structures generated by gravity-driven processes on the dune lee slopes, such as grainflow and grainfall, are similar to the suite of aeolian sedimentary structures observed on Earth and should be present and recognizable in Mars' aeolian stratigraphic record. Structures formed by traction-driven processes deviate significantly from those found on Earth. The dune hosts centimeter-scale wind ripples and large, meter-scale ripples, which are not found on Earth. The large ripples migrate across the depositional, lee slopes of the dune, which implies that these structures should be present in Mars' stratigraphic record and may appear similar to compound-dune stratification.The Mars Science Laboratory Curiosity Rover Team is acknowledged for their support of this work.

Effects of sedimentary sulfide on community structure, population dynamics, and colonization depth of macrozoobenthos in organic-rich estuarine sediments.

PubMed

Kanaya, Gen; Uehara, Tadayasu; Kikuchi, Eisuke

2016-08-15

An annual field survey and in situ recolonization experiment revealed the effects of sedimentary sulfide (H2S) on macrozoobenthos in a eutrophic brackish lagoon. Species diversity was much lower throughout the year in muddy opportunist-dominant sulfidic areas. Mass mortality occurred during warmer months under elevated H2S levels. An enclosure experiment demonstrated that sedimentary H2S modified community composition, size structure, and colonization depth of macrozoobenthos. Species-specific responses to each sediment type (sand, sulfidic mud, and mud with H2S removed) resulted in changes in the established community structure. Dominant polychaetes (Hediste spp., Pseudopolydora spp., and Capitella teleta) occurred predominantly in a thin surface layer in the presence of H2S. On the other hand, organic-rich mud facilitated settlement of polychaete larvae if it does not contain H2S. These results demonstrate that sediment characteristics, including H2S level and organic content, were key structuring factors for the macrozoobenthic assemblage in organically polluted estuarine sediments. Copyright © 2016 Elsevier Ltd. All rights reserved.

40 CFR 148.18 - Waste specific prohibitions-newly listed and identified wastes.

Code of Federal Regulations, 2012 CFR

2012-07-01

.... (e) On July 8, 1996, the wastes specified in 40 CFR 261.32 as EPA Hazardous waste numbers K156-K161... 40 Protection of Environment 24 2012-07-01 2012-07-01 false Waste specific prohibitions-newly listed and identified wastes. 148.18 Section 148.18 Protection of Environment ENVIRONMENTAL PROTECTION...

40 CFR 148.18 - Waste specific prohibitions-newly listed and identified wastes.

Code of Federal Regulations, 2011 CFR

2011-07-01

.... (e) On July 8, 1996, the wastes specified in 40 CFR 261.32 as EPA Hazardous waste numbers K156-K161... 40 Protection of Environment 23 2011-07-01 2011-07-01 false Waste specific prohibitions-newly listed and identified wastes. 148.18 Section 148.18 Protection of Environment ENVIRONMENTAL PROTECTION...

40 CFR 148.18 - Waste specific prohibitions-newly listed and identified wastes.

Code of Federal Regulations, 2013 CFR

2013-07-01

.... (e) On July 8, 1996, the wastes specified in 40 CFR 261.32 as EPA Hazardous waste numbers K156-K161... 40 Protection of Environment 24 2013-07-01 2013-07-01 false Waste specific prohibitions-newly listed and identified wastes. 148.18 Section 148.18 Protection of Environment ENVIRONMENTAL PROTECTION...

40 CFR 148.18 - Waste specific prohibitions-newly listed and identified wastes.

Code of Federal Regulations, 2014 CFR

2014-07-01

.... (e) On July 8, 1996, the wastes specified in 40 CFR 261.32 as EPA Hazardous waste numbers K156-K161... 40 Protection of Environment 23 2014-07-01 2014-07-01 false Waste specific prohibitions-newly listed and identified wastes. 148.18 Section 148.18 Protection of Environment ENVIRONMENTAL PROTECTION...

Improving ground-penetrating radar data in sedimentary rocks using deterministic deconvolution

USGS Publications Warehouse

Xia, J.; Franseen, E.K.; Miller, R.D.; Weis, T.V.; Byrnes, A.P.

2003-01-01

Resolution is key to confidently identifying unique geologic features using ground-penetrating radar (GPR) data. Source wavelet "ringing" (related to bandwidth) in a GPR section limits resolution because of wavelet interference, and can smear reflections in time and/or space. The resultant potential for misinterpretation limits the usefulness of GPR. Deconvolution offers the ability to compress the source wavelet and improve temporal resolution. Unlike statistical deconvolution, deterministic deconvolution is mathematically simple and stable while providing the highest possible resolution because it uses the source wavelet unique to the specific radar equipment. Source wavelets generated in, transmitted through and acquired from air allow successful application of deterministic approaches to wavelet suppression. We demonstrate the validity of using a source wavelet acquired in air as the operator for deterministic deconvolution in a field application using "400-MHz" antennas at a quarry site characterized by interbedded carbonates with shale partings. We collected GPR data on a bench adjacent to cleanly exposed quarry faces in which we placed conductive rods to provide conclusive groundtruth for this approach to deconvolution. The best deconvolution results, which are confirmed by the conductive rods for the 400-MHz antenna tests, were observed for wavelets acquired when the transmitter and receiver were separated by 0.3 m. Applying deterministic deconvolution to GPR data collected in sedimentary strata at our study site resulted in an improvement in resolution (50%) and improved spatial location (0.10-0.15 m) of geologic features compared to the same data processed without deterministic deconvolution. The effectiveness of deterministic deconvolution for increased resolution and spatial accuracy of specific geologic features is further demonstrated by comparing results of deconvolved data with nondeconvolved data acquired along a 30-m transect immediately adjacent

40 CFR 268.38 - Waste specific prohibitions-newly identified organic toxicity characteristic wastes and newly...

Code of Federal Regulations, 2010 CFR

2010-07-01

... identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene... specific prohibitions—newly identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene production wastes. (a) Effective December 19, 1994, the wastes specified in 40...

Nature and origin of the sedimentary pile subducting in the Nankai Through

NASA Astrophysics Data System (ADS)

Chauvel, C.; Garcon, M.; Yobregat, E.; Chipoulet, C.; Labanieh, S.

2013-12-01

Nd-Hf isotopes and trace and major element concentrations were measured on bulk sediments recovered at Site C0012 during IODP Expedition 322 and 333 in the Shikoku basin. We analyzed the composition of different lithologies such as clay, claystone, sand, sandstone, and ash layers, all through the sedimentary pile, from the surface to the sediment-basalt interface, in order to identify compositional trends and source variations with depth. Major and trace element contents of the background sediments (hemipelagic mudstone) are very homogenous and span a relatively small range of values throughout the entire sedimentary pile. Their composition resembles that of the average upper continental crust of Rudnick and Gao (2003, Treatise on Geochemistry, Vol.3, p. 1-64). Nd and Hf isotopes are more variable, relatively unradiogenic (-8 < ɛNd < -3 ; -4 < ɛHf < +5) but display no systematic variations with depth (Fig. 1). Such isotopic compositions indicate that the background sedimentation of the Shikoku basin may consist of volcaniclastic material from the Izu-Bonin and/or Ryukyu arcs, detrital material eroded from SW Japan and relatively high amount of an evolved continental-derived component, probably Chinese loess as already suggested by Mahomet (2005, Sediment. Geol., 182, p.183-199). Compared to the background sedimentation, volcanic ash layers and volcaniclastic sandstones have very different trace element patterns and more radiogenic Nd-Hf isotopic signature (Fig. 1). Our results allow us to distinguish at least two different volcanic sources for these deposits. At the bottom of the sedimentary pile, siliciclastic sandstones with a mid-Miocene age are present; they have remarkably low ɛNd and ɛHf values (i.e. ɛNd < -8 and ɛHf < -5). Such isotopic compositions clearly demonstrate that their source cannot be the Japanese mainland, as suggested by previous studies (e.g. Underwood et al, 2009, Exp.322 PR ; Fergusson, 2003, Proc. ODP, Sci. Results 190/196). These

Sedimentary processes and depositional environments of the Horn River Shale in British Columbia, Canada

NASA Astrophysics Data System (ADS)

Yoon, Seok-Hoon; Koh, Chang-Seong; Joe, Young-Jin; Woo, Ju-Hwan; Lee, Hyun-Suk

2017-04-01

The Horn River Basin in the northeastern British Columbia, Canada, is one of the largest unconventional gas accumulations in North America. It consists mainly of Devonian shales (Horn River Formation) and is stratigraphically divided into three members, the Muskwa, Otterpark and Evie in descending order. This study focuses on sedimentary processes and depositional environments of the Horn River shale based on sedimentary facies analysis aided by well-log mineralogy (ECS) and total organic carbon (TOC) data. The shale formation consists dominantly of siliceous minerals (quartz, feldspar and mica) and subordinate clay mineral and carbonate materials, and TOC ranging from 1.0 to 7.6%. Based on sedimentary structures and micro texture, three sedimentary facies were classified: homogeneous mudstone (HM), indistinctly laminated mudstone (ILM), and planar laminated mudstone (PLM). Integrated interpretation of the sedimentary facies, lithology and TOC suggests that depositional environment of the Horn River shale was an anoxic quiescent basin plain and base-of-slope off carbonate platform or reef. In this deeper marine setting, organic-rich facies HM and ILM, dominant in the Muskwa (the upper part of the Horn River Formation) and Evie (the lower part of the Horn River Formation) members, may have been emplaced by pelagic to hemipelagic sedimentation on the anoxic sea floor with infrequent effects of low-density gravity flows (turbidity currents or nepheloid flows). In the other hand, facies PLM typifying the Otterpark Member (the middle part of the Horn River Formation) suggests more frequent inflow of bottom-hugging turbidity currents punctuating the hemipelagic settling of the background sedimentation process. The stratigraphic change of sedimentary facies and TOC content in the Horn River Formation is most appropriately interpreted to have been caused by the relative sea-level change, that is, lower TOC and frequent signal of turbidity current during the sea

Geothermal reservoir simulation of hot sedimentary aquifer system using FEFLOW®

NASA Astrophysics Data System (ADS)

Nur Hidayat, Hardi; Gala Permana, Maximillian

2017-12-01

The study presents the simulation of hot sedimentary aquifer for geothermal utilization. Hot sedimentary aquifer (HSA) is a conduction-dominated hydrothermal play type utilizing deep aquifer, which is heated by near normal heat flow. One of the examples of HSA is Bavarian Molasse Basin in South Germany. This system typically uses doublet wells: an injection and production well. The simulation was run for 3650 days of simulation time. The technical feasibility and performance are analysed in regards to the extracted energy from this concept. Several parameters are compared to determine the model performance. Parameters such as reservoir characteristics, temperature information and well information are defined. Several assumptions are also defined to simplify the simulation process. The main results of the simulation are heat period budget or total extracted heat energy, and heat rate budget or heat production rate. Qualitative approaches for sensitivity analysis are conducted by using five parameters in which assigned lower and higher value scenarios.

Finite-strain analysis of Metavolcano-sedimentary rocks at Gabel El Mayet area, Central Eastern Desert, Egypt

NASA Astrophysics Data System (ADS)

Kassem, Osama M. K.; Abd El Rahim, Said H.

2010-09-01

Finite strain was estimated in the metavolcano-sedimentary rocks, which surround by serpentinites of Gabel El Mayet area. Finite strain shows a relationship to nappe contacts between the metavolcano-sedimentary rocks and serpentinite and sheds light on the nature of the subhorizontal foliation typical for the Gable Mayet shear zone. We used the Rf/ ϕ and Fry methods on feldspar porphyroclasts and mafic grains from 10 metasedimentary and six metavolcanic samples in Gabel El Mayet region. Our finite-strain data show that the metavolcano-sedimentary rocks were moderately deformed and axial ratios in the XZ section range from 1.9 to 3.9. The long axes of the finite-strain ellipsoids trend W/WNW in the north and W/WSW in the south of the Gabel El Mayet shear zone. Furthermore, the short axes are subvertical to a subhorizontal foliation. The strain magnitudes increase towards the tectonic contacts between the metavolcano-sedimentary rocks and serpentinite. The data indicate oblate strain symmetry in the metavolcano-sedimentary rocks. Hence, our strain data also indicate flattening strain. We assume that the metasedimentary and metavolcanics rocks have similar deformation behaviour. The fact that finite strain accumulated during the metamorphism indicates that the nappe contacts formed during the accumulation of finite strain and thus during thrusting. We conclude that the nappe contacts formed during progressive thrusting under brittle to semi-brittle deformation conditions by simple shear and involved a component of vertical shortening, which caused the subhorizontal foliation in the Gabel El Mayet shear zone.

Relating sedimentary processes in the Bagnold Dunes to the development of crater basin aeolian stratification

NASA Astrophysics Data System (ADS)

Ewing, R. C.; Lapotre, M. G. A.; Lewis, K. W.; Day, M. D.; Stein, N.; Rubin, D. M.; Sullivan, R. J., Jr.; Banham, S.; Thomas, N. M.; Lamb, M. P.; Gupta, S.; Fischer, W. W.

2017-12-01

Wind-blown sand dunes are ubiquitous on the surface of Mars and are a recognized component of the martian stratigraphic record. Our current knowledge of the aeolian sedimentary processes that determine dune morphology, drive dune dynamics, and create aeolian cross-stratification are based upon orbital studies of ripple and dune morphodynamics, rover observations of stratification on Mars, Earth analogs, and experimental and theoretical studies of sand movement under martian conditions. Exploration of the Bagnold Dunes by the Curiosity Rover in Gale Crater, Mars provided the first opportunity to make in situ observations of martian dunes from the grain-to-dune scale. We used the suite of cameras on Curiosity, including Navigation Camera, Mast Camera, and Mars Hand Lens Imager. We measured grainsize and identified sedimentary processes similar to processes on terrestrial dunes, such as grainfall, grainflow, and impact ripples. Impact ripple grainsize had a median of 0.103 mm. Measurements of grainflow slopes indicate a relaxation angle of 29° and grainfall slopes indicate critical angles of at least 32°. Dissimilar to terrestrial dunes, large, meter-scale ripples form on all slopes of the dunes. The ripples form both sinuous and linear crestlines, have symmetric and asymmetric profiles, range in height between 12cm and 28cm, and host grainfall, grainflow, and impact ripples. The largest ripples are interpreted to integrate the annual wind cycle within the crater, whereas smaller large ripples and impact ripples form or reorient to shorter term wind cycling. Assessment of sedimentary processes in combination with dune type across the Bagnold Dunes shows that dune-field pattern development in response to a complex crater-basin wind regime dictates the distribution of geomorphic processes. From a stratigraphic perspective, zones of highest potential accumulation correlate with zones of wind convergence, which produce complex winds and dune field patterns thereby

Case study of a sabkha sedimentary environment: Mallahat al Bariquah, Libya

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krason, J.

1987-05-01

The importance of the sabkha sedimentary environment for formation and/or accumulation of hydrocarbons, salts, and various metalliferous mineral deposits has been recognized by many geologists. A sabkha in which sedimentation and the formation of salt deposits and hydrocarbons is in progress is located along the Mediterranean Sea coast, in northwestern Libya and northeastern Tunisia. The sabkha Mallahat al Bariquah was drilled in a regular grid at 1-km spacing; 63 holes have been completed. The sabkha and its vicinity were geologically mapped (1:20,000). Several hundred core and loose rock samples were thoroughly examined with regard to the lithology, mineralogy, paleontology, andmore » chemical composition. The chemistry of brine from each drill hole and solar pan was determined. Three 24-hour pumping tests were performed, and the hydrogeological conditions of the sabkha were analyzed in detail. Economically valuable bedded salt reserves of 170,800,000 MT of NaCl were discovered and proven. Additionally, over 30 million MT of potassium, magnesium, and sodium salts including bromides are recoverable from the brine. Although marine-coastal sabkhas are common, the extensive scope of this study is unique. Mallahat al Bariquah sabkha is not unique with regard to its geographic, climatic, or sedimentary environments. Therefore, Mallahat al Bariquah can be considered as a model applicable in exploration for and study of similar sedimentary environments in other geographic regions and older geologic epochs.« less

Evolution of fore-arc and back-arc sedimentary basins with focus on the Japan subduction system and its analogues

NASA Astrophysics Data System (ADS)

Sato, Hiroshi; Ishiyama, Tatsuya; Matenco, Liviu; Nader, Fadi Henri

2017-07-01

The International Lithosphere Program (ILP) seeks to elucidate the nature, dynamics, origin and evolution of the lithosphere through international, multidisciplinary geoscience research projects and coordinating committees (Cloetingh and Negendank, 2010). The focus of the Task Force VI Sedimentary Basins activities is to foster collaborations between academia, research institutes and industry in all domains relevant for the understanding of sedimentary basins, from regional to nano-scale, from the deep earth to near surface processes (e.g., Roure et al., 2010, 2013). In this activity, it is important to develop and validate novel concepts of sedimentary basin evolution and topography building by incorporating geological/geophysical datasets and methodologies applied to worldwide natural laboratories (Cloetingh et al., 2011; Cloetingh and Willett, 2013; Matenco and Andriessen, 2013). The Task Force aims to understand and predict the processes that control the formation and evolution of the coupled orogens and sedimentary basins system through integration of field studies, analytical techniques and numerical/analogue modelling. At the same time, the Task Force aims to promote research in the domain of sedimentary basins evolution and quantitative tectonics for the study of mountain building and the subsequent extensional collapse, and their quantitative implications for vertical motions on different temporal and spatial scales (Gibson et al., 2015; Matenco et al., 2016; Roure, 2008; Seranne et al., 2015). The implications of tectonics on basin fluids (fluid-flow and rock-fluid interactions) are important to understand and predict geo-resources (e.g., Nader, 2016). Important is to initiate innovative research lines in linking the evolution of sedimentary systems by integrating cross-disciplinary expertise with a focus on integrated sedimentary basins and orogenic evolution. The key is to strengthen the synergy between academic research and applied industry in large

Extensional Tectonics and Sedimentary Architecture Using 3-D Seismic Data: An Example from Hydrocarbon-Bearing Mumbai Offshore Basin, West Coast of India

NASA Astrophysics Data System (ADS)

Mukhopadhyay, D. K.; Bhowmick, P. K.; Mishra, P.

2016-12-01

In offshore sedimentary basins, analysis of 3-D seismic data tied with well log data can be used to deduce robust isopach and structure contour maps of different stratigraphic formations. The isopach maps give depocenters whereas structure contour maps give structural relief at a specific time. Combination of these two types of data helps us decipher horst-graben structures, sedimentary basin architecture and tectono-stratigraphic relations through Tertiary time. Restoration of structural cross sections with back-stripping of successively older stratigraphic layers leads to better understand tectono-sedimentary evolution of a basin. The Mumbai (or Bombay) Offshore Basin is the largest basin off the west coast of India and includes Bombay High giant oil/gas field. Although this field was discovered in 1974 and still producing, the basin architecture vis-à-vis structural evolution are not well documented. We take the approach briefly outlined above to study in detail three large hydrocarbon-bearing structures located within the offshore basin. The Cretaceous Deccan basalt forms the basement and hosts prodigal thickness (> 8 km at some localities) of Tertiary sedimentary formations.A two stage deformation is envisaged. At the first stage horst and graben structures formed due to approximately E-W extensional tectonics. This is most spectacularly seen at the basement top level. The faults associated with this extension strike NNW. At the second stage of deformation a set of ENE-striking cross faults have developed leading to the formation of transpressional structures at places. High rate of early sedimentation obliterated horst-graben architecture to large extent. An interesting aspect emerges is that the all the large-scale structures have rather low structural relief. However, the areal extent of such structures are very large. Consequently, these structures hold commercial quantities of oil/gas.

Signatures from Tissue-specific MPSS Libraries Identify Transcripts Preferentially Expressed in the Mouse Inner Ear

PubMed Central

Peters, Linda M.; Belyantseva, Inna A.; Lagziel, Ayala; Battey, James F.; Friedman, Thomas B.; Morell, Robert J.

2007-01-01

Specialization in cell function and morphology is influenced by the differential expression of mRNAs, many of which are expressed at low abundance and restricted to certain cell types. Detecting such transcripts in cDNA libraries may require sequencing millions of clones. Massively parallel signature sequencing (MPSS) is well-suited for identifying transcripts that are expressed in discrete cell types and in low abundance. We have made MPSS libraries from microdissections of three inner ear tissues. By comparing these MPSS libraries to those of 87 other tissues included in the Mouse Reference Transcriptome (MRT) online resource, we have identified genes that are highly enriched in, or specific to, the inner ear. We show by RT-PCR and in situ hybridization that signatures unique to the inner ear libraries identify transcripts with highly specific cell-type localizations. These transcripts serve to illustrate the utility of a resource that is available to the research community. Utilization of these resources will increase the number of known transcription units and expand our knowledge of the tissue-specific regulation of the transcriptome. PMID:17049805

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam Onboard Curiosity

USGS Publications Warehouse

Le Deit, Laetitia; Mangold, Nicolas; Forni, Olivier; Cousin, Agnes; Lasue, Jeremie; Schröder, Susanne; Wiens, Roger C.; Sumner, Dawn Y.; Fabre, Cecile; Stack, Katherine M.; Anderson, Ryan; Blaney, Diana L.; Clegg, Samuel M.; Dromart, Gilles; Fisk, Martin; Gasnault, Olivier; Grotzinger, John P.; Gupta, Sanjeev; Lanza, Nina; Le Mouélic, Stephane; Maurice, Sylvestre; McLennan, Scott M.; Meslin, Pierre-Yves; Nachon, Marion; Newsom, Horton E.; Payre, Valerie; Rapin, William; Rice, Melissa; Sautter, Violaine; Treiman, Alan H.

2016-01-01

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. From ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations reveals that the mean K2O abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.

High-Throughput Screening to Identify Regulators of Meiosis-Specific Gene Expression in Saccharomyces cerevisiae.

PubMed

Kassir, Yona

2017-01-01

Meiosis and gamete formation are processes that are essential for sexual reproduction in all eukaryotic organisms. Multiple intracellular and extracellular signals feed into pathways that converge on transcription factors that induce the expression of meiosis-specific genes. Once triggered the meiosis-specific gene expression program proceeds in a cascade that drives progress through the events of meiosis and gamete formation. Meiosis-specific gene expression is tightly controlled by a balance of positive and negative regulatory factors that respond to a plethora of signaling pathways. The budding yeast Saccharomyces cerevisiae has proven to be an outstanding model for the dissection of gametogenesis owing to the sophisticated genetic manipulations that can be performed with the cells. It is possible to use a variety selection and screening methods to identify genes and their functions. High-throughput screening technology has been developed to allow an array of all viable yeast gene deletion mutants to be screened for phenotypes and for regulators of gene expression. This chapter describes a protocol that has been used to screen a library of homozygous diploid yeast deletion strains to identify regulators of the meiosis-specific IME1 gene.

The impact of sedimentary coatings on the diagenetic Nd flux

NASA Astrophysics Data System (ADS)

Abbott, April N.; Haley, Brian A.; McManus, James

2016-09-01

Because ocean circulation impacts global heat transport, understanding the relationship between deep ocean circulation and climate is important for predicting the ocean's role in climate change. A common approach to reconstruct ocean circulation patterns employs the neodymium isotope compositions of authigenic phases recovered from marine sediments. In this approach, mild chemical extractions of these phases is thought to yield information regarding the εNd of the bottom waters that are in contact with the underlying sediment package. However, recent pore fluid studies present evidence for neodymium cycling within the upper portions of the marine sediment package that drives a significant benthic flux of neodymium to the ocean. This internal sedimentary cycling has the potential to obfuscate any relationship between the neodymium signature recovered from the authigenic coating and the overlying neodymium signature of the seawater. For this manuscript, we present sedimentary leach results from three sites on the Oregon margin in the northeast Pacific Ocean. Our goal is to examine the potential mechanisms controlling the exchange of Nd between the sedimentary package and the overlying water column, as well as the relationship between the εNd composition of authigenic sedimentary coatings and that of the pore fluid. In our comparison of the neodymium concentrations and isotope compositions from the total sediment, sediment leachates, and pore fluid we find that the leachable components account for about half of the total solid-phase Nd, therefore representing a significant reservoir of reactive Nd within the sediment package. Based on these and other data, we propose that sediment diagenesis determines the εNd of the pore fluid, which in turn controls the εNd of the bottom water. Consistent with this notion, despite having 1 to 2 orders of magnitude greater Nd concentration than the bottom water, the pore fluid is still <0.001% of the total Nd reservoir in the

A computational approach to identify cellular heterogeneity and tissue-specific gene regulatory networks.

PubMed

Jambusaria, Ankit; Klomp, Jeff; Hong, Zhigang; Rafii, Shahin; Dai, Yang; Malik, Asrar B; Rehman, Jalees

2018-06-07

The heterogeneity of cells across tissue types represents a major challenge for studying biological mechanisms as well as for therapeutic targeting of distinct tissues. Computational prediction of tissue-specific gene regulatory networks may provide important insights into the mechanisms underlying the cellular heterogeneity of cells in distinct organs and tissues. Using three pathway analysis techniques, gene set enrichment analysis (GSEA), parametric analysis of gene set enrichment (PGSEA), alongside our novel model (HeteroPath), which assesses heterogeneously upregulated and downregulated genes within the context of pathways, we generated distinct tissue-specific gene regulatory networks. We analyzed gene expression data derived from freshly isolated heart, brain, and lung endothelial cells and populations of neurons in the hippocampus, cingulate cortex, and amygdala. In both datasets, we found that HeteroPath segregated the distinct cellular populations by identifying regulatory pathways that were not identified by GSEA or PGSEA. Using simulated datasets, HeteroPath demonstrated robustness that was comparable to what was seen using existing gene set enrichment methods. Furthermore, we generated tissue-specific gene regulatory networks involved in vascular heterogeneity and neuronal heterogeneity by performing motif enrichment of the heterogeneous genes identified by HeteroPath and linking the enriched motifs to regulatory transcription factors in the ENCODE database. HeteroPath assesses contextual bidirectional gene expression within pathways and thus allows for transcriptomic assessment of cellular heterogeneity. Unraveling tissue-specific heterogeneity of gene expression can lead to a better understanding of the molecular underpinnings of tissue-specific phenotypes.

Sedimentary and geochemical signature of the 2016 Kaikōura Tsunami at Little Pigeon Bay: A depositional benchmark for the Banks Peninsula region, New Zealand

NASA Astrophysics Data System (ADS)

Williams, Shaun; Zhang, Tianran; Chagué, Catherine; Williams, James; Goff, James; Lane, Emily M.; Bind, Jochen; Qasim, Ilyas; Thomas, Kristie-Lee; Mueller, Christof; Hampton, Sam; Borella, Josh

2018-07-01

The 14 November 2016 Kaikōura Tsunami inundated Little Pigeon Bay in Banks Peninsula, New Zealand, and left a distinct sedimentary deposit, on the ground and within the cottage near the shore. Sedimentary (grain size) and geochemical (electrical conductivity and X-Ray Fluorescence) analyses on samples collected over successive field campaigns are used to characterize the deposits. Sediment distribution observed in the cottage in combination with flow direction indicators suggests that sediment and debris laid down within the building were predominantly the result of a single wave that had been channeled up the stream bed rather than from offshore. Salinity data indicated that the maximum tsunami-wetted and/or seawater-sprayed area extended 12.5 m farther inland than the maximum inundation distance inferred from the debris line observed a few days after the event. In addition, the salinity signature was short-lived. An overall inland waning of tsunami energy was indicated by the mean grain size and portable X-Ray Fluorescence elemental results. ITRAX data collected from three cores along an inland transect indicated a distinct elevated elemental signature at the surfaces of the cores, with an associated increase in magnetic susceptibility. Comparable signatures were also identified within subsurface stratigraphic sequences, and likely represent older tsunamis known to have inundated this bay as well as adjacent bays in Banks Peninsula. The sedimentary and geochemical signatures of the 2016 Kaikōura Tsunami at Little Pigeon Bay provide a modern benchmark that can be used to identify older tsunami deposits in the Banks Peninsula region.

High-resolution sedimentary effects of post-Little Ice Age glacial recession in Hornsund (Svalbard) - insights from chirp and core data

NASA Astrophysics Data System (ADS)

Dominiczak, Aleksander; Szczuciński, Witold; Moskalik, Mateusz; Forwick, Matthias

2017-04-01

As a result of global warming from the end of the Little Ice Age a fast withdrawal and loss of mass of many glaciers have been observed. The retreat has been particularly rapid in case of tidewater glaciers of Spitsbergen, where in an effect a new bays were formed and serve as glaciomarine sediment accumulation areas. The new depocenters in emerging bays are characterized by high sediment accumulation rates. Analysis and quantitative assessment of the processes occurring in these bays can enhance a better understanding of the dynamics of glaciers recession and bio-geochemical processes occurring in the fjords. This is particularly important because the subpolar fjords may be important storage for organic carbon on a global scale (Smith at al. 2015). In order to obtain a detailed high-resolution record of sedimentation history in the post Little Ice Age bays, 30 gravity cores and 18 box cores were collected along with detail seism acoustic surveys (Chirp) during three cruises on board of R/V Helmar Hansen in 2007, 2014 and 2015. The sediment cores revealed two major types of sediments: subglacial till and overlying laminated glacimarine mud with abundant ice rafted debris. The sediment accumulation rate of the latter is estimated to be on average in order of 1 to 5 cm per year. The periods of increase ice rafting are likely related to surge events. The dense Chirp survey grid spatial changeability in the post-Little Ice Age sediment cover. The amount and lithology of sediments in different parts of the bays also helped to link glacier dynamics with sedimentary effect. Our results confirms that despite similarities in lithology there are significant differences in sediment accumulation rates, probably driven by changes in accommodation spaces and sediment delivery. The record is also affected by effects of glacier surges. However, analyses of historical data enhanced the interpretation of sedimentary record and provide hints to identify the specific processes and

Empirical Methods for Identifying Specific Peptide-protein Interactions for Smart Reagent Development

DTIC Science & Technology

2012-09-01

orientated immobilization of proteins,” Biotechnology Progress, 22(2), 401-405 ( 2006 ). [26] J. M. Kogot, D. A. Sarkes , I. Val-Addo et al...Empirical Methods for Identifying Specific Peptide-protein Interactions for Smart Reagent Development by Joshua M. Kogot, Deborah A. Sarkes ...Peptide-protein Interactions for Smart Reagent Development Joshua M. Kogot, Deborah A. Sarkes , Dimitra N. Stratis-Cullum, and Paul M

CUTS FOR MTR EXCAVATION ILLUSTRATE SEDIMENTARY MANTLE OF SOIL AND ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

CUTS FOR MTR EXCAVATION ILLUSTRATE SEDIMENTARY MANTLE OF SOIL AND GRAVEL OVERLAYING LAVA ROCK FIFTY FEET BELOW. SAGEBRUSH HAS BEEN SCOURED FROM REST OF SITE. CAMERA PROBABLY FACES SOUTHWEST. INL NEGATIVE NO. 67. Unknown Photographer, 6/4/1950 - Idaho National Engineering Laboratory, Test Reactor Area, Materials & Engineering Test Reactors, Scoville, Butte County, ID

Sedimentary environments within a glaciated estuarine-inner shelf system: Boston Harbor and Massachusetts Bay

USGS Publications Warehouse

Knebel, H.J.

1993-01-01

Three modern sedimentary environments have been identified and mapped across the glaciated Boston Harbor estuary and adjacent inner shelf of Massachusetts Bay by means of an extensive set of sidescan sonar records and supplemental bathymetric, sedimentary, subbottom and bottom-current data. 1. (1) Environments of erosion and nondeposition appear on the sonographs either as patterns with isolated reflections (caused by outcrops of bedrock, glacial drift, and coastal plain rocks) or as patterns of strong backscatter (caused by coarse-grained lag deposits). Sediments in these environments range from boulder fields to gravelly sands with megaripples. Inside the harbor, areas of erosion or nondeposition are found primarily near mainland and insular shores and within constricted tidal channels, whereas, on the shelf, they are present over extensive areas of hummocky topography near the coast and atop local bathymetric highs offshore. 2. (2) Environments of sediment reworking are characterized on the sonographs by patterns with patches of strong to weak backscatter caused by a combination of erosional and depositional processes. These environments have diverse grain sizes that range from sandy gravels to muds. Within the harbor, the locations of reworked sediments are uncorrelated with the bottom topography, but, on the shelf, they are found on the lower flanks of bathymetric highs, within broad lows and in relatively deep water (30-50 m). 3. (3) Environments of deposition are depicted on the sonographs as uniform patterns of weak backscatter. These areas contain relatively fine-grained muddy sands and muds. Inside the harbor, depositional environments are found over extensive subtidal flats and within sheltered depressions, whereas, on the shelf, they are restricted to broad lows mainly in deep water. The extreme patchiness of modern sedimentary environments within the Boston Harbor-Massachusetts Bay system reflects the interaction between the irregular bottom topography

Organic sedimentary deposits in Titan's dry lakebeds: Probable evaporite

USGS Publications Warehouse

Barnes, J.W.; Bow, J.; Schwartz, J.; Brown, R.H.; Soderblom, J.M.; Hayes, A.G.; Vixie, G.; Le, Mouelic S.; Rodriguez, S.; Sotin, Christophe; Jaumann, R.; Stephan, K.; Soderblom, L.A.; Clark, R.N.; Buratti, B.J.; Baines, K.H.; Nicholson, P.D.

2011-01-01

We report the discovery of organic sedimentary deposits at the bottom of dry lakebeds near Titan's north pole in observations from the Cassini Visual and Infrared Mapping Spectrometer (VIMS). We show evidence that the deposits are evaporitic, making Titan just the third known planetary body with evaporitic processes after Earth and Mars, and is the first that uses a solvent other than water. ?? 2011 Elsevier Inc.

Preservation of overmature, ancient, sedimentary organic matter in carbonate concretions during outcrop weathering.

PubMed

Loyd, S J

2017-01-01

Concretions are preferentially cemented zones within sediments and sedimentary rocks. Cementation can result from relatively early diagenetic processes that include degradation of sedimentary organic compounds or methane as indicated by significantly 13 C-depleted or enriched carbon isotope compositions. As minerals fill pore space, reduced permeability may promote preservation of sediment components from degradation during subsequent diagenesis, burial heating and outcrop weathering. Discrete and macroscopic organic remains, macro and microfossils, magnetic grains, and sedimentary structures can be preferentially preserved within concretions. Here, Cretaceous carbonate concretions of the Holz Shale are shown to contain relatively high carbonate-free total organic carbon (TOC) contents (up to ~18.5 wt%) compared to the surrounding host rock (with <2.1 wt%). TOC increases with total inorganic carbon (TIC) content, a metric of the degree of cementation. Pyrite contents within concretions generally correlate with organic carbon contents. Concretion carbonate carbon isotope compositions (δ 13 C carb ) range from -22.5 to -3.4‰ (VPDB) and do not correlate strongly with TOC. Organic carbon isotope compositions (δ 13 C org ) of concretions and host rock are similar. Thermal maturity data indicate that both host and concretion organic matter are overmature and have evolved beyond the oil window maturity stage. Although the organic matter in general has experienced significant oxidative weathering, concretion interiors exhibit lower oxygen indices relative to the host. These results suggest that carbonate concretions can preferentially preserve overmature, ancient, sedimentary organic matter during outcrop weathering, despite evidence for organic matter degradation genetic mechanisms. As a result, concretions may provide an optimal proxy target for characterization of more primary organic carbon concentrations and chemical compositions. In addition, these findings

Isolation of Geobacter species from diverse sedimentary environments

USGS Publications Warehouse

Coaxes, J.D.; Phillips, E.J.P.; Lonergan, D.J.; Jenter, H.; Lovley, D.R.

1996-01-01

In an attempt to better understand the microorganisms responsible for Fe(III) reduction in sedimentary environments, Fe(III)-reducing microorganisms were enriched for and isolated from freshwater aquatic sediments, a pristine deep aquifer, and a petroleum-contaminated shallow aquifer. Enrichments were initiated with acetate or toluene as the electron donor and Fe(III) as the electron acceptor. Isolations were made with acetate or benzoate. Five new strains which could obtain energy for growth by dissimilatory Fe(III) reduction were isolated. All five isolates are gram- negative strict anaerobes which grow with acetate as the electron donor and Fe(III) as the electron acceptor. Analysis of the 16S rRNA sequence of the isolated organisms demonstrated that they all belonged to the genus Geobacter in the delta subdivision of the Proteobacteria. Unlike the type strain, Geobacter metallireducens, three of the five isolates could use H2 as an electron donor fur Fe(III) reduction. The deep subsurface isolate is the first Fe(III) reducer shown to completely oxidize lactate to carbon dioxide, while one of the freshwater sediment isolates is only the second Fe(III) reducer known that can oxidize toluene. The isolation of these organisms demonstrates that Geobacter species are widely distributed in a diversity of sedimentary environments in which Fe(III) reduction is an important process.

Permanganate diffusion and reaction in sedimentary rocks.

PubMed

Huang, Qiuyuan; Dong, Hailiang; Towne, Rachael M; Fischer, Timothy B; Schaefer, Charles E

2014-04-01

In situ chemical oxidation using permanganate has frequently been used to treat chlorinated solvents in fractured bedrock aquifers. However, in systems where matrix back-diffusion is an important process, the ability of the oxidant to migrate and treat target contaminants within the rock matrix will likely determine the overall effectiveness of this remedial approach. In this study, a series of diffusion experiments were performed to measure the permanganate diffusion and reaction in four different types of sedimentary rocks (dark gray mudstone, light gray mudstone, red sandstone, and tan sandstone). Results showed that, within the experimental time frame (~2 months), oxidant migration into the rock was limited to distances less than 500 μm. The observed diffusivities for permanganate into the rock matrices ranged from 5.3 × 10(-13) to 1.3 × 10(-11) cm(2)/s. These values were reasonably predicted by accounting for both the rock oxidant demand and the effective diffusivity of the rock. Various Mn minerals formed as surface coatings from reduction of permanganate coupled with oxidation of total organic carbon (TOC), and the nature of the formed Mn minerals was dependent upon the rock type. Post-treatment tracer testing showed that these Mn mineral coatings had a negligible impact on diffusion through the rock. Overall, our results showed that the extent of permanganate diffusion and reaction depended on rock properties, including porosity, mineralogy, and organic carbon. These results have important implications for our understanding of long-term organic contaminant remediation in sedimentary rocks using permanganate. Copyright © 2014 Elsevier B.V. All rights reserved.

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome

PubMed Central

Johnston, Henry Richard; Hu, Yi-Juan; Gao, Jingjing; O’Connor, Timothy D.; Abecasis, Gonçalo R.; Wojcik, Genevieve L; Gignoux, Christopher R.; Gourraud, Pierre-Antoine; Lizee, Antoine; Hansen, Mark; Genuario, Rob; Bullis, Dave; Lawley, Cindy; Kenny, Eimear E.; Bustamante, Carlos; Beaty, Terri H.; Mathias, Rasika A.; Barnes, Kathleen C.; Qin, Zhaohui S.; Preethi Boorgula, Meher; Campbell, Monica; Chavan, Sameer; Ford, Jean G.; Foster, Cassandra; Gao, Li; Hansel, Nadia N.; Horowitz, Edward; Huang, Lili; Ortiz, Romina; Potee, Joseph; Rafaels, Nicholas; Ruczinski, Ingo; Scott, Alan F.; Taub, Margaret A.; Vergara, Candelaria; Levin, Albert M.; Padhukasahasram, Badri; Williams, L. Keoki; Dunston, Georgia M.; Faruque, Mezbah U.; Gietzen, Kimberly; Deshpande, Aniket; Grus, Wendy E.; Locke, Devin P.; Foreman, Marilyn G.; Avila, Pedro C.; Grammer, Leslie; Kim, Kwang-Youn A.; Kumar, Rajesh; Schleimer, Robert; De La Vega, Francisco M.; Shringarpure, Suyash S.; Musharoff, Shaila; Burchard, Esteban G.; Eng, Celeste; Hernandez, Ryan D.; Pino-Yanes, Maria; Torgerson, Dara G.; Szpiech, Zachary A.; Torres, Raul; Nicolae, Dan L.; Ober, Carole; Olopade, Christopher O; Olopade, Olufunmilayo; Oluwole, Oluwafemi; Arinola, Ganiyu; Song, Wei; Correa, Adolfo; Musani, Solomon; Wilson, James G.; Lange, Leslie A.; Akey, Joshua; Bamshad, Michael; Chong, Jessica; Fu, Wenqing; Nickerson, Deborah; Reiner, Alexander; Hartert, Tina; Ware, Lorraine B.; Bleecker, Eugene; Meyers, Deborah; Ortega, Victor E.; Maul, Pissamai; Maul, Trevor; Watson, Harold; Ilma Araujo, Maria; Riccio Oliveira, Ricardo; Caraballo, Luis; Marrugo, Javier; Martinez, Beatriz; Meza, Catherine; Ayestas, Gerardo; Francisco Herrera-Paz, Edwin; Landaverde-Torres, Pamela; Erazo, Said Omar Leiva; Martinez, Rosella; Mayorga, Alvaro; Mayorga, Luis F.; Mejia-Mejia, Delmy-Aracely; Ramos, Hector; Saenz, Allan; Varela, Gloria; Marina Vasquez, Olga; Ferguson, Trevor; Knight-Madden, Jennifer; Samms-Vaughan, Maureen; Wilks, Rainford J.; Adegnika, Akim; Ateba-Ngoa, Ulysse; Yazdanbakhsh, Maria

2017-01-01

A primary goal of The Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) is to develop an ‘African Diaspora Power Chip’ (ADPC), a genotyping array consisting of tagging SNPs, useful in comprehensively identifying African specific genetic variation. This array is designed based on the novel variation identified in 642 CAAPA samples of African ancestry with high coverage whole genome sequence data (~30× depth). This novel variation extends the pattern of variation catalogued in the 1000 Genomes and Exome Sequencing Projects to a spectrum of populations representing the wide range of West African genomic diversity. These individuals from CAAPA also comprise a large swath of the African Diaspora population and incorporate historical genetic diversity covering nearly the entire Atlantic coast of the Americas. Here we show the results of designing and producing such a microchip array. This novel array covers African specific variation far better than other commercially available arrays, and will enable better GWAS analyses for researchers with individuals of African descent in their study populations. A recent study cataloging variation in continental African populations suggests this type of African-specific genotyping array is both necessary and valuable for facilitating large-scale GWAS in populations of African ancestry. PMID:28429804

Net Flux of Sedimentary Carbon to the Mantle During the Cenozoic

NASA Astrophysics Data System (ADS)

Clift, P. D.

2017-12-01

Quantification of the long-term cycling of carbon from the mantle to the surface remains contentious despite its importance in governing the climate and biosphere of Earth. Sedimentary carbon represents a significant part of the budget and can be recycled to the mantle if it reaches subduction zones and is not preserved in an accretionary prism. By estimating rates of sediment supply and accretion and taking into account carbonate and carbon contents it appears that 60 Mt/yr is presently being subducted below forearcs. 80% is in the form of carbonate, significantly more than previously estimated. Sedimentary carbon represents around two thirds of the total carbon input at the trenches, the rest being in the igneous crust. An additional 7 Mt/yr is averaged over the Cenozoic as a result of passive margin subduction during continental collision. My revised budget puts the input and output budgets within the range of uncertainties, compared to the previous deficit. Degassing from arc volcanoes and in forearcs totals 55 Mt/yr. A net flux to the mantle is probable. The efficiency of carbon subduction is largely controlled by the carbonate contents of the sediment column, and is partly linked to the latitude of the trench. Accretionary margins are the biggest suppliers of carbon to the mantle wedge, especially Java, Sumatra, Andaman-Burma and Makran because the offscraping is inefficient and the thickness of the trench sediment and trench length are both large. The Western Pacific trenches are negligible sinks of sedimentary carbon.

Transitioning Groundwater from an Extractive Resource to a Managed Water Storage Resource: Geology and Recharge in Sedimentary Basins

NASA Astrophysics Data System (ADS)

Maples, S.; Fogg, G. E.; Maxwell, R. M.; Liu, Y.

2017-12-01

Civilizations have typically obtained water from natural and constructed surface-water resources throughout most of human history. Only during the last 50-70 years has a significant quantity of water for humans been obtained through pumping from wells. During this short time, alarming levels of groundwater depletion have been observed worldwide, especially in some semi-arid and arid regions that rely heavily on groundwater pumping from clastic sedimentary basins. In order to reverse the negative effects of over-exploitation of groundwater resources, we must transition from treating groundwater mainly as an extractive resource to one in which recharge and subsurface storage are pursued more aggressively. However, this remains a challenge because unlike surface-water reservoirs which are typically replenished over annual timescales, the complex geologic architecture of clastic sedimentary basins impedes natural groundwater recharge rates resulting in decadal or longer timescales for aquifer replenishment. In parts of California's Central Valley alluvial aquifer system, groundwater pumping has outpaced natural groundwater recharge for decades. Managed aquifer recharge (MAR) has been promoted to offset continued groundwater overdraft, but MAR to the confined aquifer system remains a challenge because multiple laterally-extensive silt and clay aquitards limit recharge rates in most locations. Here, we simulate the dynamics of MAR and identify potential recharge pathways in this system using a novel combination of (1) a high-resolution model of the subsurface geologic heterogeneity and (2) a physically-based model of variably-saturated, three-dimensional water flow. Unlike most groundwater models, which have coarse spatial resolution that obscures the detailed subsurface geologic architecture of these systems, our high-resolution model can pinpoint specific geologic features and locations that have the potential to `short-circuit' aquitards and provide orders

Sedimentary facies and depositional history of the Swan Islands, Honduras

NASA Astrophysics Data System (ADS)

Ivey, Marvin L.; Breyer, John A.; Britton, Joseph C.

1980-10-01

Swan Island is a Honduran possession in the western Caribbean, located on the southeastern side of the Cayman Trench. Two sedimentary assemblages are found on the island: an older bedded sequence of mid-Tertiary age (Aquitanian or Burdigalian) and a younger sedimentary sequence of Late Pleistocene age. The older sequence is composed of a series of calcarenites, calcilutites, and siliciclastic mudstones; capping these are cliff-forming reefal carbonates of the younger sequence. The rocks of the older bedded sequence accumulated in deep water. Sedimentation consisted of a constant rain of pyroclastic debris interrupted by the episodic introduction of upslope carbonate material by turbidity currents. Uplift and deformation of this sequence was initiated sometime after the Early Miocene. By the Late Pleistocene, uplift had brought the rocks into water depths conducive to coral growth. Pleistocene sedimentation on the island was controlled by the interaction between tectonic uplift and eustatic sea-level changes. The primary controlling force on the tectonic history of the island is its proximity to the boundary between the North American and Caribbean plates.

Exhumation and stress history in the sedimentary cover during Laramide thick-skinned tectonics assessed by stylolite roughness analysis.

NASA Astrophysics Data System (ADS)

Beaudoin, Nicolas; Lacombe, Olivier; David, Marie-Eléonore; Koehn, Daniel; Coltier, Robin

2017-04-01

Basement-involvement in shortening in forelands has a strong impact on the overlying sedimentary cover. The basement influences namely the geometry of folds and structures, the stress evolution and the nature and pathways for fluid migrations. However, these influences are poorly documented in context where the basement/cover interface is shallow (<6 km). This contribution presents the reconstruction of paleostress and vertical burial history of the Palaeozoic sedimentary strata affected by the Sevier-Laramide deformation at the front of the Rocky Mountains, in the Bighorn Basin (Wyoming, USA). Stylolite populations have been considered as part of an extensive microstructure investigation including also fractures, striated microfaults and calcite twins in key major structures such as the Sheep Mountain Anticline, the Rattlesnake Mountain Anticline, and the Bighorn Mountains Arch. Stylolite recognized in the field are clearly related to successive stages of deformation of the sedimentary cover, including fold development. We further apply a newly developed roughness analysis of pressure-solution stylolites which grant access (1) to the magnitude of the vertical principal stress, hence the maximum burial depth of the strata based on sedimentary stylolites, (2) to the principal stress orientations and regimes based on tectonic stylolites and (3) ultimately to the complete stress tensor when sedimentary and tectonic stylolites can be considered coeval. This approach was then coupled to mechanical properties of main competent formations exposed in the basin. Results of stylolite paleopiezometry, compared and combined to existing paleostress estimates from calcite twins and to exhumation reconstruction from low-temperature thermochronology, unravel the potential of the method to refine the structural history at the structure- and basin-scale. On top of the advances this case study adds to the methodology, the quantified reconstruction of stress-exhumation evolution in

Comparative genome analysis identifies novel nucleic acid diagnostic targets for use in the specific detection of Haemophilus influenzae.

PubMed

Coughlan, Helena; Reddington, Kate; Tuite, Nina; Boo, Teck Wee; Cormican, Martin; Barrett, Louise; Smith, Terry J; Clancy, Eoin; Barry, Thomas

2015-10-01

Haemophilus influenzae is recognised as an important human pathogen associated with invasive infections, including bloodstream infection and meningitis. Currently used molecular-based diagnostic assays lack specificity in correctly detecting and identifying H. influenzae. As such, there is a need to develop novel diagnostic assays for the specific identification of H. influenzae. Whole genome comparative analysis was performed to identify putative diagnostic targets, which are unique in nucleotide sequence to H. influenzae. From this analysis, we identified 2H. influenzae putative diagnostic targets, phoB and pstA, for use in real-time PCR diagnostic assays. Real-time PCR diagnostic assays using these targets were designed and optimised to specifically detect and identify all 55H. influenzae strains tested. These novel rapid assays can be applied to the specific detection and identification of H. influenzae for use in epidemiological studies and could also enable improved monitoring of invasive disease caused by these bacteria. Copyright © 2015 Elsevier Inc. All rights reserved.

Late to middle Pleistocene Arctic glacial history implied from a sedimentary record from the Northwind Ridge

NASA Astrophysics Data System (ADS)

Liu, Y.; Dong, L.; Shi, X.; Zhu, A.

2017-12-01

Abstract: Sediment core ARC6-C21 collected from the Northwind Ridge, western Arctic Ocean, covers the late to middle Quaternary (Marine Isotope Stages (MIS) 1-11), as estimated by correlation to earlier proposed Arctic Ocean stratigraphies and AMS14C dating of the youngest sediments. Detailed examination of the elemental composition of sediment along with grain size in core ARC6-C21 provides important new information about sedimentary environments and provenance. We use increased contents of coarse debris as an indicator of glacier collapse events at the margins of the western Arctic Ocean, and identify the provenance of these events from geochemical composition. Notably, peaks of MgO and CaO, including large dropstones, presumably track the Laurentide Ice Sheet (LIS) discharge events to the Arctic Ocean. Major LIS inputs occurred during the stratigraphic intervals estimated as MIS 3, intra-MIS 5 and 7 events, MIS 8, and MIS 10. Inputs from the East Siberian Ice Sheet (ESIS) and/or Eurasia Ice Sheet (EIS)are inferred from peaks of SiO2, K2O and Na2O associated with coarse sediment. Major ESIS and/or EIS sedimentary events occurred in the intervals estimated as MIS 2, MIS 4, MIS 6, MIS 8 and MIS 10. Keywords: Sediment core, Pleistocene, western Arctic Ocean, geochemistry, grain size, sediment provenance, glaciations

Holocene depocenter migration and sediment accumulation in Delaware Bay: A submerging marginal marine sedimentary basin

USGS Publications Warehouse

Fletcher, C. H.; Knebel, H.J.; Kraft, J.C.

1992-01-01

The Holocene transgression of the Delaware Bay estuary and adjacent Atlantic coast results from the combined effect of regional crustal subsidence and eustasy. Together, the estuary and ocean coast constitute a small sedimentary basin whose principal depocenter has migrated with the transgression. A millenial time series of isopach and paleogeographic reconstructions for the migrating depocenter outlines the basin-wide pattern of sediment distribution and accumulation. Upland sediments entering the basin through the estuarine turbidity maximum accumulate in tidal wetland or open water sedimentary environments. Wind-wave activity at the edge of the tidal wetlands erodes the aggraded Holocene section and builds migrating washover barriers. Along the Atlantic and estuary coasts of Delaware, the area of the upland environment decreases from 2.0 billion m2 to 730 million m2 during the transgression. The area of the tidal wetland environment increases from 140 million to 270 million m2, and due to the widening of the estuary the area of open water increases from 190 million to 1.21 billion m2. Gross uncorrected rates of sediment accumulation for the tidal wetlands decrease from 0.64 mm/yr at 6 ka to 0.48 mm/yr at 1 ka. In the open water environments uncorrected rates decrease from 0.50 mm/yr to 0.04 mm/yr over the same period. We also present data on total sediment volumes within the tidal wetland and open water environments at specific intervals during the Holocene. 

Sedimentary Mercury Enrichments as a Marker for Submarine Large Igneous Province Volcanism? Evidence From the Mid-Cenomanian Event and Oceanic Anoxic Event 2 (Late Cretaceous)

NASA Astrophysics Data System (ADS)

Scaife, J. D.; Ruhl, M.; Dickson, A. J.; Mather, T. A.; Jenkyns, H. C.; Percival, L. M. E.; Hesselbo, S. P.; Cartwright, J.; Eldrett, J. S.; Bergman, S. C.; Minisini, D.

2017-12-01

Oceanic Anoxic Event 2 (OAE 2), during the Cenomanian-Turonian transition (˜94 Ma), was the largest perturbation of the global carbon cycle in the mid-Cretaceous and can be recognized by a positive carbon-isotope excursion in sedimentary strata. Although OAE 2 has been linked to large-scale volcanism, several large igneous provinces (LIPs) were active at this time (e.g., Caribbean, High Arctic, Madagascan, Ontong-Java) and little clear evidence links OAE 2 to a specific LIP. The Mid-Cenomanian Event (MCE, ˜96 Ma), identified by a small, 1‰ positive carbon-isotope excursion, is often referred to as a prelude to OAE 2. However, no underlying cause has yet been demonstrated and its relationship to OAE 2 is poorly constrained. Here we report sedimentary mercury (Hg) concentration data from four sites, three from the southern margin of the Western Interior Seaway and one from Demerara Rise, in the equatorial proto-North Atlantic Ocean. We find that, in both areas, increases in mercury concentrations and Hg/TOC ratios coincide with the MCE and the OAE 2. However, the increases found in these sites are of a lower magnitude than those found in records of many other Mesozoic events, possibly characteristic of a marine rather than atmospheric dispersal of mercury for both events. Combined, the new mercury data presented here are consistent with an initial magmatic pulse at the time of the MCE, with a second, greater pulse at the onset of OAE 2, possibly related to the emplacement of LIPs in the Pacific Ocean and/or the High Arctic.

Mid-depth sedimentary oxygenation variation in the western Pacific since the last glacial period: geochemical evidence from the Okinawa Trough

NASA Astrophysics Data System (ADS)

Zou, J. J.; Shi, X.; Zhu, A.

2017-12-01

In this study, we investigate a suite of sediment geochemical proxies (total organic carbon and carbonate contents, carbon to nitrogen ratio, aluminum and redox-sensitive elements) to reconstruct the history of sedimentary oxygenation in the northern Okinawa Trough (OT) over the last 50 thousand years (ka). Our data support the presence of oxygen-deficient deep waters during the late deglacial and Preboreal phases (15‒9.5 ka), but oxygenated water column during the Heinrich Stadial 1 (HS1) and the Last Glacial Maximum (LGM). In contrast, increased sedimentary oxygenations are evident during the late glacial period and since 8.5 ka. Fluctuations of sedimentary oxygenation were widespread and apparently coherent over the entire North Pacific basin, reflecting broad effects of North Pacific Intermediate Water (NPIW) ventilation and export productivity. Intensified Kuroshio, however, improved the sedimentary oxygenation since 8.5 ka. We found the correspondence between changes in deglacial sedimentary oxygenation in the OT and Atlantic Meridional Overturning Circulation through the NPIW ventilation. The mechanism behind Atlantic-Pacific ventilation seesaw seems to be attributed to the perturbation of sea ice formation in high latitude North Pacific through atmospheric teleconnection.

Riverine Carbon and the Sedimentary Record on the Continental Shelves

DTIC Science & Technology

2004-09-30

Riverine Carbon and the Sedimentary Record on the Continental Shelves Stefano Miserocchi Istituto Scienze Marine, Sezione Geologia Marina...formerly Istituto di Geologia Marina) Consiglio Nazionale delle Ricerche Via Gobetti, 101 40129 Bologna, Italy phone: +39 (051) 6398880 Fax. +39 (051... Geologia Marina,,(formerly Istituto di Geologia Marina),Consiglio Nazionale delle Ricerche,,Via Gobetti, 101,40129 Bologna, Italy, , 8. PERFORMING

Geophysical anatomy of counter-slope scarps in sedimentary flysch rocks (Outer Western Carpathians)

NASA Astrophysics Data System (ADS)

Tábořík, P.; Lenart, J.; Blecha, V.; Vilhelm, J.; Turský, O.

2017-01-01

A multidisciplinary geophysical survey, consisting of electrical resistivity tomography (ERT), ground penetrating radar (GPR), shallow seismic refraction (SSR) and gravity survey (GS), was used to investigate the counter-slope scarps, one of the typical manifestations of the relaxed zones of rock massifs, and the possible initial stages of deep-seated landslides (DSLs). Two upper parts of the extensive DSLs within the Moravskoslezské Beskydy Mountains (Outer Western Carpathians - OWC) built by the sedimentary flysch rock were chosen as the testing sites. A combined geophysical survey on the flysch rocks was performed on both localities to enhance our present findings. The survey revealed that the ERT is able to reliably detect underground discontinuities, which are manifested at the ground surface by one of the typical landforms (tension cracks, trenches, pseudokarst sinkholes, double-crested ridges and counter-slope scarps). Previous studies suggested that bedrock discontinuities should be depicted by high-resistivity features within ERT surveying. According to SSR and GS, expected zones of weakened rock massif were not confirmed directly underneath the superficial landforms, but they were shifted. Based on the SSR and GS measurements, the depicted high-contrast transitions between high- and low-resistivity domains within the ERT profiles were newly identified as possible manifestation of bedrock discontinuities. The results of GPR measurements give only limited information on the sedimentary flysch rocks, due to shallow penetrating depth and locally strong signal attenuation. The combined results of multidisciplinary geophysical surveying confirmed an importance of employing more than one geophysical technique for integrated interpretations of measured data. Integrated interpretations of the measured geophysical data provided a new insight into massif disintegration and the geomorphic origin of the landforms related to the DSL.

Hydrodynamic Controls on Muddy Sedimentary Fabric Development on Low-Gradient Shelves: Atchafalaya Chenier Plain Subaqueous Delta

NASA Astrophysics Data System (ADS)

Denommee, K.; Bentley, S. J.; Harazim, D.; Macquaker, J.

2016-02-01

Short sediment cores and geophysical data collected on the Southwest Louisiana Chenier Plain inner shelf have been studied in order to examine the sedimentary products of current-wave-enhanced sediment gravity flows (CWESGFs), a type of sediment gravity flow where the driving energy required to transport sediment across low-gradient settings is augmented by the near-bed orbital velocity of surface gravity wave and near-bed currents. Sedimentary fabrics observed on the SWLA shelf document the following flow evolution: (1) the erosion of the underlying substrate in response to wave-generated shear stresses in the bottom boundary layer, followed by (2) the deposition of ripple a crossbeded unit during wave-mediated oscillatory motions in low-viscosity suspension; (3) the deposition of subtle intercalated laminae during laminar flow at higher suspended sediment concentrations; followed by the deposition of (4) normally graded sediments during the waning phases of the flow. Significantly, the sedimentary fabrics deposited by CWESGFs on SWLA shelf show diagnostic variations from CWESGF-generated sedimentary fabrics observed on the Eel and Amazon shelves. Differences between the observed sedimentary fabrics are hypothesized to result from variations in the relative contribution of near-bed currents, wave orbital velocities, and bed slope (gravity) to the driving energy of the CWESGF, and as such can be catalogued as diagnostic recognition criteria using a prismatic ternary diagram where current-, wave-, and gravity-dominated end members form the vertices of a triangle, and wave period forms the prism axis. In this framework forcing mechanisms can be represented quantitatively, based on wave period and the relative contribution of each of the CWESGF velocity terms. This framework can be used to explore relationships between hydrodynamics and CWESGF fabrics, providing geologists with a tool with which to better recognize the depositional products of CWESGFs in the rock

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

PubMed Central

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere. PMID:24624126

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes.

PubMed

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere.

Sulfur and iron geochemistry of the dynamic sedimentary system at the Costa Rica margin, IODP Expedition 344

NASA Astrophysics Data System (ADS)

Gott, C.; Riedinger, N.; Formolo, M.; Solomon, E. A.; Torres, M. E.; Bates, S. M.; Lyons, T. W.; 344 Scientific Party, I.

2013-12-01

One of the major targets of the CRISP (Costa Rica Seismogenesis Project) was to explore diagenetic processes, including fluid flow, related to the complex sedimentary and tectonic behavior of the Costa Rica margin system. Here we present preliminary results of the iron and sulfur geochemistry from sediments collected during the IODP Expedition 344 at Holes U1413B and U1414A. Our specific goal was to investigate the impact of this dynamic system on biogeochemical processes - especially regarding the sulfur cycle - and how minerals record these processes in the geologic record. The sediments at both investigated locations display non-steady state pore water conditions. Specifically, the deposits at Hole U1413B are characterized by a shallow sulfate-methane transition zone (SMTZ; approximately 15 mbsf), where released hydrogen sulfide reacts with reactive iron minerals to form iron sulfides. At Hole U1414A pore water sulfate is present at several hundreds of meters sediment depth, while the concentration of hydrogen sulfide is low (<4 μM). The measured concentrations of solid phase iron sulfides in the sediments indicate that pyrite is the main sulfur-bearing phase, reaching concentrations of 2 and 3 wt.%, in U1413B and U1414A, respectively. Sequential extractions of iron oxides reveal the presence of reactive iron phases, although in low concentrations (total iron oxides are below 1.1 wt.%), indicating ongoing alteration of iron oxides. The occurrence of these reactive iron minerals in the deeply buried sediments at Hole U1414A has implications for the deep biosphere - as those minerals can still be utilized by the microbial community. The non-steady state condition of the sedimentary system at both locations is also mirrored in the S-isotopic signal in the pore fluids as well as solid phase. The 34S-enriched sulfate (δ34S >+60 ‰) in the deeper sediment column is reflected in the δ34S profile of the in situ formed iron sulfides - the results can have

Tectonostratigraphic reconstruction Cretaceous volcano-sedimentary in the northwestern Andes: from extensional tectonics to arc accretion.

NASA Astrophysics Data System (ADS)

Zapata, S.; Patino, A. M.; Cardona, A.; Mejia, D.; Leon, S.; Jaramillo, J. S.; Valencia, V.; Parra, M.; Hincapie, S.

2014-12-01

Active continental margins characterized by continuous convergence experienced overimposed tectonic configurations that allowed the formation of volcanic arcs, back arc basins, transtensional divergent tectonics or the accretion of exotic volcanic terranes. Such record, particularly the extensional phases, can be partially destroyed and obscure by multiple deformational events, the accretion of exotic terranes and strike slip fragmentation along the margin. The tectonic evolution of the northern Andes during the Mesozoic is the result of post Pangea extension followed by the installation of a long-lived Jurassic volcanic arc (209 - 136 ma) that apparently stops between 136 Ma and 110 Ma. The Quebradagrande Complex has been define as a single Lower Cretaceous volcano-sedimentary unit exposed in the western flank of the Central Cordillera of the Colombian Andes that growth after the Late Jurassic to Early Cretaceous magmatic hiatus. The origin of this unit have been related either to an oceanic volcanic arc or a marginal basin environment. The existence of such contrasting models reflect the regional perspective followed in published studies and the paucity of detail analysis of the volcano-sedimentary sequences.We integrate multiple approaches including structural mapping, stratigraphy, geochemistry, U-Pb provenance and geochronology to improve the understanding of this unit and track the earlier phases of accumulation that are mask on the overimposed tectonic history. Our preliminary results suggest the existence of different volcano-sedimentary units that accumulated between 100 Ma and 82 Ma.The older Lower Cretaceous sequences was deposited over Triassic metamorphic continental crust and include a upward basin deepening record characterized by thick fan delta conglomerates, followed by distal turbidites and a syn-sedimentary volcanic record at 100 ma. The other sequence include a 85 - 82 Ma fringing arc that was also formed close to the continental margin or

40 CFR 268.38 - Waste specific prohibitions-newly identified organic toxicity characteristic wastes and newly...

Code of Federal Regulations, 2014 CFR

2014-07-01

... identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene... specific prohibitions—newly identified organic toxicity characteristic wastes and newly listed coke by... numbers F037, F038, K107-K112, K117, K118, K123-K126, K131, K132, K136, U328, U353, U359, and soil and...

40 CFR 268.38 - Waste specific prohibitions-newly identified organic toxicity characteristic wastes and newly...

Code of Federal Regulations, 2013 CFR

2013-07-01

... identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene... specific prohibitions—newly identified organic toxicity characteristic wastes and newly listed coke by... numbers F037, F038, K107-K112, K117, K118, K123-K126, K131, K132, K136, U328, U353, U359, and soil and...

40 CFR 268.38 - Waste specific prohibitions-newly identified organic toxicity characteristic wastes and newly...

Code of Federal Regulations, 2012 CFR

2012-07-01

... identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene... specific prohibitions—newly identified organic toxicity characteristic wastes and newly listed coke by... numbers F037, F038, K107-K112, K117, K118, K123-K126, K131, K132, K136, U328, U353, U359, and soil and...

40 CFR 268.38 - Waste specific prohibitions-newly identified organic toxicity characteristic wastes and newly...

Code of Federal Regulations, 2011 CFR

2011-07-01

... identified organic toxicity characteristic wastes and newly listed coke by-product and chlorotoluene... specific prohibitions—newly identified organic toxicity characteristic wastes and newly listed coke by... numbers F037, F038, K107-K112, K117, K118, K123-K126, K131, K132, K136, U328, U353, U359, and soil and...

Evidence for only minor contributions from bacteria to sedimentary organic carbon

NASA Technical Reports Server (NTRS)

Hartgers, W. A.; Sinninghe Damste, J. S.; Requejo, A. G.; Allan, J.; Hayes, J. M.; de Leeuw, J. W.

1994-01-01

Because their molecular signatures are often prominent in extracts of sediments, bacteria are thought to be important contributors to petroleum source beds. It has been shown recently, however, that abundances of biomarkers do not always reflect relative contributions to sedimentary organic carbon (Corg). The contribution of photosynthetic green sulphur bacteria to sediments can be assessed effectively because the diagenetic products of distinctive carotenoids from these organisms occur widely and their biomass is isotopically labelled, being enriched in 13C. We show here that, although sediments and oils from the Western Canada and Williston basins contain prominent biomarkers of photosynthetic bacteria, the absence of 13C enrichment in the total Corg requires that the bacterial contribution is in fact minimal. Although the importance of bacterial reworking of sedimentary debris cannot be doubted, we argue that our findings, when considered in conjunction with those from other settings, suggest that bacterial biomass may commonly represent only a minor component of total Corg in carbonaceous rocks.

Capability of ERTS-1 imagery to investigate geological and structural features in a sedimentary basin (Bassin Parisien, France)

NASA Technical Reports Server (NTRS)

Cavelier, C.; Scanvic, J. Y.; Weecksteen, G.; Zizerman, A.

1973-01-01

A preliminary study of the MSS imagery of a sedimentary basin whose structure is regular is reported. Crops and natural vegetation are distributed all over the site located under temperate climate. Ground data available concern plant species geology and tectonic and are correlated with results from ERTS 1 imagery. This comparison shows a good correlation. The main geological units are detected or enhanced by way of agricultural land use and/or natural vegetation. Alluvial deposits are outlined by vegetation grass land and poplar trees. Some spatial relationship of geostructures, suspected until now, are identified or extended in associating results from different spectral bands.

Parametric Analysis of the feasibility of low-temperature geothermal heat recovery in sedimentary basins

NASA Astrophysics Data System (ADS)

Tomac, I.; Caulk, R.

2016-12-01

The current study explored the feasibility of heat recovery through the installation of heat exchangers in abandoned oil and gas wells. Finite Element Methods (FEM) were employed to determine the effects of various site specific parameters on production fluid temperature. Specifically, the study parameterized depth of well, subsurface temperature gradient, sedimentary rock conductivity, and flow rate. Results show that greater well depth is associated with greater heat flow, with the greatest returns occurring between depths of 1.5 km and 7 km. Beyond 7 km, the rate of return decreases due to a non-linear increase of heat flow combined with a continued linear increase of pumping cost. One cause for the drop of heat flow was the loss of heat as the fluid travels from depth to the surface. Further analyses demonstrated the benefit of an alternative heat exchanger configuration characterized by thermally insulated sections of the upward heat exchanger. These simulations predict production fluid temperature gains between 5 - 10 oC, which may be suitable for geothermal heat pump applications.

Geochemical Analysis for Sedimentary Emerald Mineralization in Western Emerald belt, Colombia

NASA Astrophysics Data System (ADS)

Nino Vasquez, Gabriel Felipe; Song, Sheng-Rong

2017-04-01

1Gabriel Felipe Nino Vasquez and 1Sheng-Rong Song 1Department of Geosciences, National Taiwan University Colombia hosts a large quantity of mineral resources due to its complex tectonic arrangement, and emerald deposits are one of the most representatives for the country. Emeralds in Colombia occur mainly in black shale, and are located in eastern Andes Cordillera with two parallel belts separated by approximately 130 Km: the Western belt (WB) and the Eastern belt (EB). The geological, mineralogical and tectonic features from these belts are quite similar (Buenaventura 2002). Previous researchers concluded that emeralds in Colombia came from hydrothermal sedimentary processes without any magmatic influence, and suggested that the source of Cr, V and Be (which are important components of the beryl) was the host rock. According to their results, the process which allowed the shale to release these cations was the metasomatism (albitization and carbonization), which was resulted from the interaction between the rocks and the alkaline brines. Fractures and fault planes originated by these tectonic movements were fulfilled by enriched fluids, which they allowed emeralds and the other minerals precipitation with decreasing alkalinity and pressure (Giuliani et al. 1994). However, there were several pitfalls of conclusions drawn from previous researches. Firstly, Cr and V were widely distributed and come from mafic and ultramafic rocks, and Be was mostly found in pegmatites, finding these elements in sedimentary rocks suggest that probably the ultramafic rocks occurred not far from the deposits. Secondly, there was an inconsistency in the estimated temperatures of emeralds formation, i.e. temperature of hydrothermal sedimentary deposits was only 200° C, while laboratory analysis showed that the formation of emeralds was higher than 300° C. Therefore, there might still be an allocthonus influence on emerald formation that significantly increases the temperature. This

Sedimentary Deposits within Ius Chasma

NASA Image and Video Library

2015-07-15

Sedimentary deposits are common within Valles Marineris. Most larger chasmata contain kilometer-thick light-toned layered deposits composed of sulfates. However, some of the chasmata, like Ius Chasma shown in this image from NASA Mars Reconnaissance Orbiter, lack these deposits or have much thinner deposits. The light-toned deposits in Ius Chasma are observed both along the floor and inner wallrock materials. Some of the light-toned deposits appear to post-date formation of the chasma floor, whereas other deposits appear to lie beneath wallrock materials, indicating they are older. By examining the stratigraphy using digital terrain models and 3D images, it should be possible to decipher the relative ages of the different geologic units. CRISM data may also provide insight into the mineralogy, which will tell scientists about the aqueous conditions that emplaced the light-toned deposits. http://photojournal.jpl.nasa.gov/catalog/PIA19855

Bottom-trawling along submarine canyons impacts deep sedimentary regimes

PubMed Central

Paradis, Sarah; Puig, Pere; Masqué, Pere; Juan-Díaz, Xènia; Martín, Jacobo; Palanques, Albert

2017-01-01

Many studies highlight that fish trawling activities cause seafloor erosion, but the assessment of the remobilization of surface sediments and its relocation is still not well documented. These impacts were examined along the flanks and axes of three headless submarine canyons incised on the Barcelona continental margin, where trawling fleets have been operating for decades. Trawled grounds along canyon flanks presented eroded and highly reworked surface sediments resulting from the passage of heavy trawling gear. Sedimentation rates on the upper canyon axes tripled and quadrupled its natural (i.e. pre-industrialization) values after a substantial increase in total horsepower of the operating trawling fleets between 1960 s and 1970 s. These impacts affected the upper canyon reaches next to fishing grounds, where sediment resuspended by trawling can be transported towards the canyon axes. This study highlights that bottom trawling has the capacity to alter natural sedimentary environments by promoting sediment-starved canyon flanks, and by enhancing sedimentation rates along the contiguous axes, independently of canyons’ morphology. Considering the global mechanisation and offshore expansion of bottom trawling fisheries since the mid-20th century, these sedimentary alterations may occur in many trawled canyons worldwide, with further ecological impacts on the trophic status of these non-resilient benthic communities. PMID:28233856

Bottom-trawling along submarine canyons impacts deep sedimentary regimes

NASA Astrophysics Data System (ADS)

Paradis, Sarah; Puig, Pere; Masqué, Pere; Juan-Díaz, Xènia; Martín, Jacobo; Palanques, Albert

2017-02-01

Many studies highlight that fish trawling activities cause seafloor erosion, but the assessment of the remobilization of surface sediments and its relocation is still not well documented. These impacts were examined along the flanks and axes of three headless submarine canyons incised on the Barcelona continental margin, where trawling fleets have been operating for decades. Trawled grounds along canyon flanks presented eroded and highly reworked surface sediments resulting from the passage of heavy trawling gear. Sedimentation rates on the upper canyon axes tripled and quadrupled its natural (i.e. pre-industrialization) values after a substantial increase in total horsepower of the operating trawling fleets between 1960 s and 1970 s. These impacts affected the upper canyon reaches next to fishing grounds, where sediment resuspended by trawling can be transported towards the canyon axes. This study highlights that bottom trawling has the capacity to alter natural sedimentary environments by promoting sediment-starved canyon flanks, and by enhancing sedimentation rates along the contiguous axes, independently of canyons’ morphology. Considering the global mechanisation and offshore expansion of bottom trawling fisheries since the mid-20th century, these sedimentary alterations may occur in many trawled canyons worldwide, with further ecological impacts on the trophic status of these non-resilient benthic communities.

Bottom-trawling along submarine canyons impacts deep sedimentary regimes.

PubMed

Paradis, Sarah; Puig, Pere; Masqué, Pere; Juan-Díaz, Xènia; Martín, Jacobo; Palanques, Albert

2017-02-24

Many studies highlight that fish trawling activities cause seafloor erosion, but the assessment of the remobilization of surface sediments and its relocation is still not well documented. These impacts were examined along the flanks and axes of three headless submarine canyons incised on the Barcelona continental margin, where trawling fleets have been operating for decades. Trawled grounds along canyon flanks presented eroded and highly reworked surface sediments resulting from the passage of heavy trawling gear. Sedimentation rates on the upper canyon axes tripled and quadrupled its natural (i.e. pre-industrialization) values after a substantial increase in total horsepower of the operating trawling fleets between 1960 s and 1970 s. These impacts affected the upper canyon reaches next to fishing grounds, where sediment resuspended by trawling can be transported towards the canyon axes. This study highlights that bottom trawling has the capacity to alter natural sedimentary environments by promoting sediment-starved canyon flanks, and by enhancing sedimentation rates along the contiguous axes, independently of canyons' morphology. Considering the global mechanisation and offshore expansion of bottom trawling fisheries since the mid-20 th century, these sedimentary alterations may occur in many trawled canyons worldwide, with further ecological impacts on the trophic status of these non-resilient benthic communities.

Efficacy of ACL injury risk screening methods in identifying high-risk landing patterns during a sport-specific task.

PubMed

Fox, A S; Bonacci, J; McLean, S G; Saunders, N

2017-05-01

Screening methods sensitive to movement strategies that increase anterior cruciate ligament (ACL) loads are likely to be effective in identifying athletes at-risk of ACL injury. Current ACL injury risk screening methods are yet to be evaluated for their ability to identify athletes' who exhibit high-risk lower limb mechanics during sport-specific maneuvers associated with ACL injury occurrences. The purpose of this study was to examine the efficacy of two ACL injury risk screening methods in identifying high-risk lower limb mechanics during a sport-specific landing task. Thirty-two female athletes were screened using the Landing Error Scoring System (LESS) and Tuck Jump Assessment. Participants' also completed a sport-specific landing task, during which three-dimensional kinematic and kinetic data were collected. One-dimensional statistical parametric mapping was used to examine the relationships between screening method scores, and the three-dimensional hip and knee joint rotation and moment data from the sport-specific landing. Higher LESS scores were associated with reduced knee flexion from 30 to 57 ms after initial contact (P = 0.003) during the sport-specific landing; however, no additional relationships were found. These findings suggest the LESS and Tuck Jump Assessment may have minimal applicability in identifying athletes' who exhibit high-risk landing postures in the sport-specific task examined. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Thermal evolution of sedimentary basins in Alaska

USGS Publications Warehouse

Johnsson, Mark J.; Howell, D.G.

1996-01-01

The complex tectonic collage of Alaska is reflected in the conjunction of rocks of widely varying thermal maturity. Indicators of the level of thermal maturity of rocks exposed at the surface, such as vitrinite reflectance and conodont color alteration index, can help constrain the tectonic evolution of such complex regions and, when combined with petrographic, modern heat flow, thermogeochronologic, and isotopic data, allow for the detailed evaluation of a region?s burial and uplift history. We have collected and assembled nearly 10,000 vitrinite-reflectance and conodont-color-alteration index values from the literature, previous U.S. Geological Survey investigations, and our own studies in Alaska. This database allows for the first synthesis of thermal maturity on a broadly regional scale. Post-accretionary sedimentary basins in Alaska show wide variability in terms of thermal maturity. The Tertiary interior basins, as well as some of the forearc and backarc basins associated with the Aleutian Arc, are presently at their greatest depth of burial, with immature rocks exposed at the surface. Other basins, such as some backarc basins on the Alaska Peninsula, show higher thermal maturities, indicating modest uplift, perhaps in conjunction with higher geothermal gradients related to the arc itself. Cretaceous ?flysch? basins, such as the Yukon-Koyukuk basin, are at much higher thermal maturity, reflecting great amounts of uplift perhaps associated with compressional regimes generated through terrane accretion. Many sedimentary basins in Alaska, such as the Yukon-Koyukuk and Colville basins, show higher thermal maturity at basin margins, perhaps reflecting greater uplift of the margins in response to isostatic unloading, owing to erosion of the hinterland adjacent to the basin or to compressional stresses adjacent to basin margins.

Sedimentary processes on the Atlantic Continental Slope of the United States

USGS Publications Warehouse

Knebel, H.J.

1984-01-01

Until recently, the sedimentary processes on the United States Atlantic Continental Slope were inferred mainly from descriptive studies based on the bathymetry and on widely spaced grab samples, bottom photographs, and seismic-reflection profiles. Over the past 6 years, however, much additional information has been collected on the bottom morphology, characteristics of shallow-subbottom strata, velocity of bottom currents, and transport of suspended and bottom sediments. A review of these new data provides a much clearer understanding of the kinds and relative importance of gravitational and hydrodynamic processes that affect the surface sediments. On the rugged slope between Georges Bank and Cape Lookout, N.C., these processes include: (1) small scale mass wasting within submarine canyons and peripheral gullies; (2) density flows within some submarine valleys; (3) sand spillover near the shelf break; (4) sediment creep on the upper slope; and (5) hemipelagic sedimentation on the middle and lower slope. The area between Georges Bank and Hudson Canyon is further distinguished by the relative abundance of large-scale slump scars and deposits on the open slope, the presence of ice-rafted debris, and the transport of sand within the heads of some submarine canyons. Between Cape Lookout and southern Florida, the slope divides into two physiographic units, and the topography is smooth and featureless. On the Florida-Hatteras Slope, offshelf sand spillover and sediment winnowing, related to Gulf Stream flow and possibly to storm-driven currents, are the major processes, whereas hemipelagic sedimentation is dominant over the offshore slope along the seaward edge of the Blake Plateau north of the Blake Spur. Slumping generally is absent south of Cape Lookout, although one large slump scarp (related to uplift over salt diapirs) has been identified east of Cape Romain. Future studies concerning sedimentary processes on the Atlantic slope need to resolve: (1) the ages and

An Aquatic Journey toward Aeolis Mons (Mount Sharp): Sedimentary Rock Evidence observed by Mars Science Laboratory

NASA Astrophysics Data System (ADS)

Gupta, Sanjeev; Edgar, Lauren; Williams, Rebecca; Rubin, David; Yingst, Aileen; Lewis, Kevin; Kocurek, Gary; Anderson, Ryan; Dromart, Gilles; Edgett, Ken; Hardgrove, Craig; Kah, Linda; Mangold, Nicolas; Milliken, Ralph; Minitti, Michelle; Palucis, Marisa; Rice, Melissa; Stack, Katie; Sumner, Dawn; Williford, Ken

2014-05-01

Since leaving Yellowknife Bay (summer 2013), Mars Science Laboratory Curiosity has investigated a number of key outcrops as it traverses along the Rapid Transit Route toward the entry point to begin its investigations of the extensive rock outcrops at the base of Mount Sharp. Rover observations are characterizing the variability of lithologies and sedimentary facies along the traverse and establishing stratigraphic relationships with the aim of reconstructing depositional processes and palaeoenvironments. Here, we report on sedimentological and stratigraphic observations based on images from the Mastcam and MAHLI instruments at Shaler and the Darwin waypoint. The informally named Shaler outcrop, which forms part of the Glenelg member of the Yellowknife Bay formation [1] is remarkable for the preservation of a rich suite of sedimentary structures and architecture, and was investigated on sols 120-121 and 309-324. The outcrop forms a pebbly sandstone body that is ~0.7 m thick and extends for up to 20 m. Shaler is largely characterized by pebbly sandstone facies showing well-developed decimeter-scale trough cross-stratification. Bedding geometries indicate sub-critical angles of climb, resulting in preservation of only the lee slope deposits. The grain size, and the presence and scale of cross-stratification imply sediment transport and deposition by unidirectional currents in a fluvial sedimentary environment. Curiosity investigated the informally named Darwin waypoint between sols 390 and 401, making detailed Mastcam and MAHLI observations at two separate locations. The Darwin outcrop comprises light-toned sandstone beds separated by darker pebbly sandstones. MAHLI observations permit differentiation of distinct sedimentary facies. The Altar Mountain facies is a poorly sorted pebbly sandstone that is rich in fine pebbles. Pebbles are sub-angular to sub-rounded in shape and show no preferred orientation or fabric. Pebbles and sand grains show clast-to-clast contacts

Rare earth elements and neodymium isotopes in sedimentary organic matter

NASA Astrophysics Data System (ADS)

Freslon, Nicolas; Bayon, Germain; Toucanne, Samuel; Bermell, Sylvain; Bollinger, Claire; Chéron, Sandrine; Etoubleau, Joel; Germain, Yoan; Khripounoff, Alexis; Ponzevera, Emmanuel; Rouget, Marie-Laure

2014-09-01

We report rare earth element (REE) and neodymium (Nd) isotope data for the organic fraction of sediments collected from various depositional environments, i.e. rivers (n = 25), estuaries (n = 18), open-ocean settings (n = 15), and cold seeps (n = 12). Sedimentary organic matter (SOM) was extracted using a mixed hydrogen peroxide/nitric acid solution (20%-H2O2-0.02 M-HNO3), after removal of carbonate and oxy-hydroxide phases with dilute hydrochloric acid (0.25 M-HCl). A series of experimental tests indicate that extraction of sedimentary organic compounds using H2O2 may be complicated occasionally by partial dissolution of sulphide minerals and residual carbonates. However, this contamination is expected to be minor for REE because measured concentrations in H2O2 leachates are about two-orders of magnitude higher than in the above mentioned phases. The mean REE concentrations determined in the H2O2 leachates for samples from rivers, estuaries, coastal seas and open-ocean settings yield relatively similar levels, with ΣREE = 109 ± 86 ppm (mean ± s; n = 58). The organic fractions leached from cold seep sediments display even higher concentration levels (285 ± 150 ppm; mean ± s; n = 12). The H2O2 leachates for most sediments exhibit remarkably similar shale-normalized REE patterns, all characterized by a mid-REE enrichment compared to the other REE. This suggests that the distribution of REE in leached sedimentary organic phases is controlled primarily by biogeochemical processes, rather than by the composition of the source from which they derive (e.g. pore, river or sea-water). The Nd isotopic compositions for organic phases leached from river sediments are very similar to those for the corresponding detrital fractions. In contrast, the SOM extracted from marine sediments display εNd values that typically range between the εNd signatures for terrestrial organic matter (inferred from the analysis of the sedimentary detrital fractions) and marine organic matter

Continental Drilling to Explore Earth's Sedimentary, Paleobiological, and Biogeochemical Record

NASA Astrophysics Data System (ADS)

Cohen, Andrew; Soreghan, Gerilyn

2013-07-01

A workshop to promote research using continental scientific drilling to explore the Earth's sedimentary, paleobiological, and biogeochemical record was held in Norman, Okla. The workshop, funded by the U.S. National Science Foundation (NSF), was intended to encourage U.S.-based scientists to take advantage of the exceptional capacity of unweathered, continuous sediment cores to serve as archives of the Earth's history.

Effects of Hypoxia on Sedimentary Nitrogen Cycling in the Pensacola Bay Estuary

EPA Science Inventory

Eutrophic-induced hypoxic events pose a serious threat to estuaries in coastal systems. Hypoxic events are becoming more intense and widespread with changes in land use and increased anthropogenic pressures. Microbial communities involved in sedimentary nitrogen (N) cycling may h...

The South China - Indochina collision: a perspective from sedimentary basins analysis

NASA Astrophysics Data System (ADS)

Rossignol, Camille; Bourquin, Sylvie; Hallot, Erwan; Poujol, Marc; Roger, Françoise; Dabard, Marie-Pierre; Martini, Rossana; Villeneuve, Michel; Cornée, Jean-Jacques; Peyrotty, Giovan

2017-04-01

Sedimentary basins, through the sedimentary successions and the nature of the deposits, reflect the geology of the area from which the sediments were derived and thus provide valuable record of hinterland tectonism. As the collision between the South China and the Indochina blocks (i.e., the Indosinian orogeny) is still the object of a number of controversies regarding, for instance, its timing and the polarity of the subduction, the sedimentary basins associated with this mountain belt are likely to provide clues to reconstruct its geodynamic evolution. However, both the Sam Nua Basin (located to the south of the inner zones of the Indosinian orogeny and the Song Ma ophiolites) and the Song Da Basin (located to the north of the inner zones), northern Vietnam, are still lacking important information regarding the depositional environments and the ages of the main formations that they contain. Using sedimentological and dating analyses (foraminifers biostratigraphy and U-Pb dating on detrital zircon), we provide a new stratigraphic framework for these basins and propose a geodynamic evolution of the present-day northern Vietnam. During the Early Triassic, the Sam Nua Basin was mainly supplied by volcaniclastic sediments originating from an active volcanic activity. Geochemical investigations, combined with sedimentological and structural analyses, support an arc-related setting for this magmatism. This magmatic arc resulted from the subduction of a south dipping oceanic slab that once separated the South China from the Indochina blocks. During the Middle to the Late Triassic, the Sam Nua Basin underwent erosion that lead to the formation of a major unconformity, termed the Indosinian unconformity. This unconformity is interpreted to result from the erosion of the Indosinian mountain belt, built after the continental collision between the South China and the Indochina blocks. Later, during the Late Triassic, the Sam Nua Basin experienced the deposition of very coarse

The Experiences of Parents with Adolescents Identified as Having a Specific Learning Disability

ERIC Educational Resources Information Center

Seals, Linda J.

2010-01-01

Of the 6.6 million children in the United States who were deemed in 2008 to have a disability that required special instruction, over 39% were classified as specific learning disabled (SLD). This figure translates into a high number of people who are parenting a child identified as having a SLD. Bronfenbrenner's theory of the ecology of human…

Geomorphological and sedimentary processes of the glacially influenced northwestern Iberian continental margin and abyssal plains

NASA Astrophysics Data System (ADS)

Llave, Estefanía; Jané, Gloria; Maestro, Adolfo; López-Martínez, Jerónimo; Hernández-Molina, F. Javier; Mink, Sandra

2018-07-01

The offshore region of northwestern Iberia offers an opportunity to study the impacts of along-slope processes on the morphology of a glacially influenced continental margin, which has traditionally been conceptually characterised by predominant down-slope sedimentary processes. High-resolution multibeam bathymetry, acoustic backscatter and ultrahigh-resolution seismic reflection profile data are integrated and analysed to describe the present-day and recent geomorphological features and to interpret their associated sedimentary processes. Seventeen large-scale seafloor morphologies and sixteen individual echo types, interpreted as structural features (escarpments, marginal platforms and related fluid escape structures) and depositional and erosional bedforms developed either by the influence of bottom currents (moats, abraded surfaces, sediment waves, contourite drifts and ridges) or by gravitational features (gullies, canyons, slides, channel-levee complexes and submarine fans), are identified for the first time in the study area (spanning 90,000 km2 and water depths of 300 m to 5 km). Different types of slope failures and turbidity currents are mainly observed on the upper and lower slopes and along submarine canyons and deep-sea channels. The middle slope morphologies are mostly determined by the actions of bottom currents (North Atlantic Central Water, Mediterranean Outflow Water, Labrador Sea Water and North Atlantic Deep Water), which thereby define the margin morphologies and favour the reworking and deposition of sediments. The abyssal plains (Biscay and Iberian) are characterised by pelagic deposits and channel-lobe systems (the Cantabrian and Charcot), although several contourite features are also observed at the foot of the slope due to the influence of the deepest water masses (i.e., the North Atlantic Deep Water and Lower Deep Water). This work shows that the study area is the result of Mesozoic to present-day tectonics (e.g. the marginal platforms

Geochemistry of shale and sedimentary pyrite as a proxy for gold fertility in the Selwyn basin area, Yukon

NASA Astrophysics Data System (ADS)

Sack, Patrick J.; Large, Ross R.; Gregory, Daniel D.

2018-01-01

Selwyn basin area strata contain sedimentary pyrite with Au above background levels when analyzed by laser ablation-inductively coupled mass spectrometry. Hyland Group rocks contain framboidal pyrite contents of 670 ppb Au, 1223 ppm As, and 5.3 ppm Te; the mean of all types of sedimentary pyrite in the Hyland Group is 391 ppb Au, 1489 ppm As, and 3.8 ppm Te. These levels are similar to sedimentary pyrite in host lithologies from major orogenic gold districts in New Zealand and Australia. Comparison of whole rock and pyrite data show that rocks deposited in continental slope settings with significant terrigenous input contain pyrite that is consistently enriched in Au, As, Te, Co, and Cu. Although data are limited, whole rock samples of stratigraphic units containing Au-rich pyrite also contain high Au, indicating that most of the Au is within sedimentary pyrite. Based on geologic characteristics and comparison of pyrite chemistry data with whole rock chemistry, Selwyn basin area strata have the necessary ingredients to form orogenic gold deposits: Au-enriched source rocks, metamorphic conditions permissive of forming a metamorphic ore fluid, and abundant structural preparation for channeling fluids and depositing ore.

COMPETITIVE METAGENOMIC DNA HYBRIDIZATION IDENTIFIES HOST-SPECIFIC MICROBIAL GENETIC MARKERS IN COW FECAL SAMPLES

EPA Science Inventory

Several PCR methods have recently been developed to identify fecal contamination in surface waters. In all cases, researchers have relied on one gene or one microorganism for selection of host specific markers. Here, we describe the application of a genome fragment enrichment met...

COMPETITIVE METAGENOMIC DNA HYBRIDIZATION IDENTIFIES HOST-SPECIFIC GENETIC MARKERS IN CATTLE FECAL SAMPLES - ABSTRACT

EPA Science Inventory

Several PCR methods have recently been developed to identify fecal contamination in surface waters. In all cases, researchers have relied on one gene or one microorganism for selection of host specific markers. Here, we describe the application of a genome fragment enrichment met...

Questioning the Sedimentary Paradigm for Granites

NASA Astrophysics Data System (ADS)

Glazner, A. F.; Bartley, J. M.; Coleman, D. S.; Boudreau, A.; Walker, J. D.

2007-12-01

A critical question regarding volcano-pluton links is whether plutons are samples of magma that passed through on its way to eruption, or residues left behind after volcanic rocks were extracted. A persistent theme of recent work on granites sensu lato is that many are sedimentary accumulations of crystals that lost significant volumes of magmatic liquid. This view is based on observations of structures that clearly seem to reflect deposition on a magma chamber floor (e.g., flows of chilled mafic magma into silicic magma) and on the inference that many other structures, such as modal layering, truncated layering, and crystal accumulations, reflect crystal sedimentation on such chamber floors. There are significant physical and geochemical reasons to question this view, based on observations in the Sierra Nevada of California and similar results from other batholiths. First, few granites show the enrichments in Ba, Sr, and relative Eu that feldspar accumulation should produce. Second, sedimentary features such as graded bedding and cross-bedding form in highly turbulent flows, but turbulence is unachievable in viscous silicic liquids, where velocities on the order of 104 m/s would be required to induce turbulence in a liquid with η=104 Pa s. Third, tabular modally layered domains commonly cut surrounding modal layering on both sides, and orientations of modal layering and of the troughs of "ladder dikes" commonly scatter widely within hectare-sized areas; it is difficult to reconcile these features with gravity-driven settling. Fourth, accumulations of K-feldspar megacrysts are typically inferred to be depositional, but this is precluded by crystallization of most K- feldspar after rheologic lock-up occurs. Finally, accumulations of K-feldspar and hornblende are typically packed too tightly to be depositional. With analogy to layered mafic intrusions, many features attributed to crystal sedimentation in granites may be better explained by crystal aging and other in

Deformation style of the Mesozoic sedimentary rocks in southern Thailand

NASA Astrophysics Data System (ADS)

Kanjanapayont, Pitsanupong

2014-10-01

Mesozoic sedimentary rocks in southern Thailand are widespread from NNE-SSW and N-S in Chumphon and Trang provinces. The Mesozoic stratigraphic units are the marine Triassic Sai Bon Formation and the non-marine Jurassic-Cretaceous Thung Yai Group, the latter subdivided into Khlong Min, Lam Thap, Sam Chom, and Phun Phin Formations. These units overlie Permian carbonate rocks with an angular unconformity, and are overlain unconformably by Cenozoic units and the Quaternary sediments. The Mesozoic rocks have been folded to form two huge first-ordered syncline or synclinoria, the Chumphon and Surat Thani-Krabi-Trang synclinoria. These synclinoria are elongated in NNE-SSW to N-S direction, and incorporate asymmetric lower-order parasitic folds. The folds have moderately to steeply dipping eastward limbs and more gently dipping westward limbs. These folds were transected by brittle fractures in four major directions. These geologic structures indicate WNW-ESE to E-W contraction with top-to-the-east simple shear at some time before the deposition of the Cenozoic sedimentary units. No major deformation has affected the rocks subsequently, apart from the formation of the fault-controlled Cenozoic basins.

Modern sedimentary environments in a large tidal estuary, Delaware Bay

USGS Publications Warehouse

Knebel, H.J.

1989-01-01

Data from an extensive grid of sidescan-sonar records reveal the distribution of sedimentary environments in the large, tidally dominated Delaware Bay estuary. Bathymetric features of the estuary include large tidal channels under the relatively deep (> 10 m water depth) central part of the bay, linear sand shoals (2-8 m relief) that parallel the sides of the tidal channels, and broad, low-relief plains that form the shallow bay margins. The two sedimentary environments that were identified are characterized by either (1) bedload transport and/or erosion or (2) sediment reworking and/or deposition. Sand waves and sand ribbons, composed of medium to coarse sands, define sites of active bedload transport within the tidal channels and in gaps between the linear shoals. The sand waves have spacings that vary from 1 to 70 m, amplitudes of 2 m or less, and crestlines that are usually straight. The orientations of the sand waves and ribbons indicate that bottom sediment movement may be toward either the northwest or southeast along the trends of the tidal channels, although sand-wave asymmetry indicates that the net bottom transport is directed northwestward toward the head of the bay. Gravelly, coarse-grained sediments, which appear as strongly reflective patterns on the sonographs, are also present along the axes and flanks of the tidal channels. These coarse sediments are lag deposits that have developed primarily where older strata were eroded at the bay floor. Conversely, fine sands that compose the linear shoals and muddy sands that cover the shallow bay margins appear mainly on the sonographs either as smooth featureless beds that have uniform light to moderate shading or as mosaics of light and dark patches produced by variations in grain size. These acoustic and textural characteristics are the result of sediment deposition and reworking. Data from this study (1) support the hypothesis that bed configurations under deep tidal flows are functions of current

Magnetic fabrics in tectonically inverted sedimentary basins: a review

NASA Astrophysics Data System (ADS)

García-Lasanta, Cristina; Román-Berdiel, Teresa; Casas-Sainz, Antonio; Oliva-Urcia, Belén; Soto, Ruth; Izquierdo-Llavall, Esther

2017-04-01

Magnetic fabric studies in sedimentary rocks were firstly focused on strongly deformed tectonic contexts, such as fold-and-thrust belts. As measurement techniques were improved by the introduction of high-resolution equipments (e.g. KLY3-S and more recent Kappabridge susceptometers from AGICO Inc., Czech Republic), more complex tectonic contexts could be subjected to anisotropy of magnetic susceptibility (AMS) analyses in order to describe the relationship between tectonic conditions and the orientation and shape of the resultant magnetic ellipsoids. One of the most common complex tectonic frames involving deformed sedimentary rocks are inverted extensional basins. In the last decade, multiple AMS studies revealed that the magnetic fabric associated with the extensional stage (i.e. a primary magnetic fabric) can be preserved despite the occurrence of subsequent deformational processes. In these cases, magnetic fabrics may provide valuable information about the geometry and kinematics of the extensional episode (i.e. magnetic ellipsoids with their minimum susceptibility axis oriented perpendicular to the deposit plane and magnetic lineation oriented parallel to the extension direction). On the other hand, several of these studies have also determined how the subsequent compressional stage can modify the primary extensional fabric in some cases, particularly in areas subjected to more intense deformation (with development of compression-related cleavage). In this contribution we present a compilation of AMS studies developed in sedimentary basins that underwent different degree of tectonic inversion during their history, in order to describe the relationship of this degree of deformation and the degree of imprint that tectonic conditions have in the previous magnetic ellipsoid (primary extension-related geometry). The inverted basins included in this synthesis are located in the Iberian Peninsula and show: i) weak deformation (W Castilian Branch and Maestrazgo basin

Magnetic resonance imaging analyses of varved marine sedimentary records of the Gulf of California

NASA Astrophysics Data System (ADS)

Briskin, Madeleine; Robins, Jon; Riedel, William R.; Booker, Ron

1986-08-01

Nuclear Magnetic Resonance Imaging used for the first time to analyze marine sedimentary records of the Gulf of California is a remarkable improvement over the more conventional X-ray technique in the identification of organic rich layers. Analytical results indicate that NMRI differentiates clearly between organic rich (light) and organic poor (dark) deposits. It also provides a fine resolution of sedimentary structures, laminae and stratigraphic subtleties. It may be made to yield a three-dimensional stratigraphy; the procedure is nondestructive. The organic vs. inorganic resolution provided by NMRI technology complemented by X-ray when needed should facilitate future studies of paleoceanographic, paleoclimatic and biogeochemical cycles recorded in the vast deposits of marine clays.

Extensional deformation of the Guadalquivir Basin: rate of WSW-ward tectonic displacement from Upper Tortonian sedimentary rocks

NASA Astrophysics Data System (ADS)

Roldán, Francisco J.; Azañón, Jose Miguel; Rodríguez-Fernández, Jose; María Mateos, Rosa

2016-04-01

The Guadalquivir Basin (Upper Tortonian-Quaternary sedimentary infilling) has been considered the foreland basin of the Betic Orogen built up during its collision with the Sudiberian margin. The basin is currently restricted to its westernmost sector, in the Cadiz Gulf, because the Neogene-Quaternary uplift of the Betic Cordillera has produced the emersion of their central and eastern parts. The upper Tortonian chronostratigraphic unit is the oldest one and it was indistinctly deposited on the South Iberian paleomargin and the External units from the Betic Cordillera. However, these rocks are undeformed on the Sudiberian paleomargin while they are deeply affected by brittle deformation on the External Betic Zone. Outcrops of Upper Tortonian sedimentary rocks on External Betic Zone are severely fragmented showing allocthonous characters with regard to those located on the Sudiberian paleomargin. This post- Upper Tortonian deformation is not well known in the External Zones of the Cordillera where the most prominent feature is the ubiquity of a highly deformed tecto-sedimentary unit outcropping at the basement of the Guadalquivir sedimentary infilling. This tecto-sedimentary unit belongs to the Mass Wasting Extensional Complex (Rodríguez-Fernández, 2014) formed during the collision and westward migration of the Internal Zone of the Betic Cordillera (15-8,5 Ma). In the present work, we show an ensemble of tectonic, geophysical and cartographic data in order to characterize the post-Upper Tortonian deformation. For this, seismic reflection profiles have been interpreted with the help of hidrocarbon boreholes to define the thickness of the Upper Tortonian sedimentary sequence. All these data provide an estimation of the geometrical and kinematic characteristics of the extensional faults, direction of movement and rate of displacement of these rocks during Messinian/Pliocene times. References Rodríguez-Fernández, J., Roldan, F. J., J.M. Azañón y Garcia-Cortes, A

Textural Maturity Analysis and Sedimentary Environment Discrimination Based on Grain Shape Data

NASA Astrophysics Data System (ADS)

Tunwal, M.; Mulchrone, K. F.; Meere, P. A.

2017-12-01

Morphological analysis of clastic sedimentary grains is an important source of information regarding the processes involved in their formation, transportation and deposition. However, a standardised approach for quantitative grain shape analysis is generally lacking. In this contribution we report on a study where fully automated image analysis techniques were applied to loose sediment samples collected from glacial, aeolian, beach and fluvial environments. A range of shape parameters are evaluated for their usefulness in textural characterisation of populations of grains. The utility of grain shape data in ranking textural maturity of samples within a given sedimentary environment is evaluated. Furthermore, discrimination of sedimentary environment on the basis of grain shape information is explored. The data gathered demonstrates a clear progression in textural maturity in terms of roundness, angularity, irregularity, fractal dimension, convexity, solidity and rectangularity. Textural maturity can be readily categorised using automated grain shape parameter analysis. However, absolute discrimination between different depositional environments on the basis of shape parameters alone is less certain. For example, the aeolian environment is quite distinct whereas fluvial, glacial and beach samples are inherently variable and tend to overlap each other in terms of textural maturity. This is most likely due to a collection of similar processes and sources operating within these environments. This study strongly demonstrates the merit of quantitative population-based shape parameter analysis of texture and indicates that it can play a key role in characterising both loose and consolidated sediments. This project is funded by the Irish Petroleum Infrastructure Programme (www.pip.ie)

Sedimentary denitrification: Isotope fractionation and its impact on water column nitrate isotopes

NASA Astrophysics Data System (ADS)

Dähnke, K.; Thamdrup, B.

2012-04-01

The global marine nitrogen cycle is constrained by one major source and two processes that act as nitrogen sinks: nitrogen fixation on the one side and denitrification or anammox on the other. These processes with their respective isotope effecst set the marine nitrate 15N-isotope value to a relatively constant average of 5 per mil. This value can be used to better assess the magnitude of these source and sink terms, but the underlying assumption at present is that sedimentary denitrification, a process responsible for approximately one third of global nitrogen removal, has little to no isotope effect on the water column. We tested this hypothesis in sediment incubations, measuring net denitrification and nitrogen and oxygen stable isotope fractionation in surface sediments from the coastal Baltic Sea (Boknis Eck, Northern Germany). We found tremendously high denitrification rates, and regardless of current paradigms assuming little fractionation during sediment denitrification, we measured fractionation factors of 19 per mil for nitrogen and 11 per mil for oxygen in nitrate. These results potentially challenge the current view of fractionation during sedimentary denitrification and imply that nitrogen budget calculation may need to consider this variability. Furthermore, the ratio of fractionation factors for nitrogen and oxygen is distinct from the 1 : 1 ratio otherwise found in marine systems, and suggests that isotope kinetics of sedimentary denitrification might be entirely different from water column denitrification. Acknowledgements: This work was funded by the German Research Foundation (DFG) and in parts by the Danish National Research Foundation.

Sedimentary geology of the middle Carboniferous of the Donbas region (Dniepr-Donets Basin, Ukraine).

PubMed

van Hinsbergen, Douwe J J; Abels, Hemmo A; Bosch, Wolter; Boekhout, Flora; Kitchka, Alexander; Hamers, Maartje; van der Meer, Douwe G; Geluk, Mark; Stephenson, Randell A

2015-03-20

The Paleozoic Dniepr-Donets Basin in Belarus, Ukraine, and Russia forms a major hydrocarbon province. Although well- and seismic data have established a 20 km thick stratigraphy, field-studies of its sediments are scarce. The inverted Donbas segment (Ukraine) exposes the middle Carboniferous part of the basin's stratigraphy. Here, we provide detailed sedimentological data from 13 sections that cover 1.5 of the total of 5 km of the Bashkirian and Moscovian stages and assess the paleoenvironment and paleo-current directions. Middle Carboniferous deposition occurred in a shelf environment, with coal deposition, subordinate fluvial facies, and abundant lower and middle shoreface facies, comprising an intercalated package of potential source and reservoir rocks. Sedimentary facies indicate a paleodepth range from below storm wave base to near-coastal swamp environments. Sedimentation and subsidence were hence in pace, with subtle facies changes likely representing relative sea-level changes. Paleocurrent directions are remarkably consistently southeastward in time and space in the different sedimentary facies across the Donbas Fold Belt, illustrating a dominant sedimentary infill along the basin axis, with little basin margin influence. This suggests that the middle Carboniferous stratigraphy of the Dniepr-Donets basin to the northwest probably contains significant amounts of fluvial sandstones, important for assessing hydrocarbon reservoir potential.

Sedimentary geology of the middle Carboniferous of the Donbas region (Dniepr-Donets basin, Ukraine)

PubMed Central

van Hinsbergen, Douwe J. J.; Abels, Hemmo A.; Bosch, Wolter; Boekhout, Flora; Kitchka, Alexander; Hamers, Maartje; van der Meer, Douwe G.; Geluk, Mark; Stephenson, Randell A.

2015-01-01

The Paleozoic Dniepr-Donets Basin in Belarus, Ukraine, and Russia forms a major hydrocarbon province. Although well- and seismic data have established a 20 km thick stratigraphy, field-studies of its sediments are scarce. The inverted Donbas segment (Ukraine) exposes the middle Carboniferous part of the basin's stratigraphy. Here, we provide detailed sedimentological data from 13 sections that cover 1.5 of the total of 5 km of the Bashkirian and Moscovian stages and assess the paleoenvironment and paleo-current directions. Middle Carboniferous deposition occurred in a shelf environment, with coal deposition, subordinate fluvial facies, and abundant lower and middle shoreface facies, comprising an intercalated package of potential source and reservoir rocks. Sedimentary facies indicate a paleodepth range from below storm wave base to near-coastal swamp environments. Sedimentation and subsidence were hence in pace, with subtle facies changes likely representing relative sea-level changes. Paleocurrent directions are remarkably consistently southeastward in time and space in the different sedimentary facies across the Donbas Fold Belt, illustrating a dominant sedimentary infill along the basin axis, with little basin margin influence. This suggests that the middle Carboniferous stratigraphy of the Dniepr-Donets basin to the northwest probably contains significant amounts of fluvial sandstones, important for assessing hydrocarbon reservoir potential. PMID:25791400

Organic sulphur in macromolecular sedimentary organic matter: I. Structure and origin of sulphur-containing moieties in kerogen, asphaltenes and coal as revealed by flash pyrolysis

NASA Astrophysics Data System (ADS)

Sinninghe Damsté, Jaap S.; Eglinton, Timothy I.; De Leeuw, Jan W.; Schenck, P. A.

1989-04-01

The distributions of sulphur-containing compounds generated by flash pyrolysis of macromolecular sedimentary organic matter (kerogen, coal, asphaltenes) were studied by gas chromatography in combination with Sselective flame photometric detection or mass spectrometry. The abundance of S-containing pyrolysis products in the pyrolysates relative to other products was highly variable depending on the sample but the types of products were generally similar, being mainly composed of "gaseous" compounds ( e.g., hydrogen sulphide) and low molecular weight alkylthiophenes and alkylbenzothiophenes. The distribution patterns of the alkylated thiophenes were dominated by a limited number of all theoretically possible isomers. The alkyl substitution patterns of the dominant isomers bear a strong similarity to those of the organic S compounds present in the GC-amenable fractions of bitumens and immature oils. Therefore, it is suggested that these S-containing pyrolysis products are formed by pyrolysis of related thiophenic and benzothiophenic moieties present in the macromolecular sedimentary substances. Specific examples include those with linear alkyl, iso and anteiso alkyl, isoprenoid alkyl and steroidal carbon skeletons. The presence of higher molecular weight alkylthiophenes and alkylbenzothiophenes with these same carbon skeletons in pyrolysates of S-rich kerogens provided further evidence for the presence of these S-containing moieties. It is likely that these moieties have been formed by abiogenic S incorporation into sedimentary organic matter during early diagenesis.

Sedimentary Facies of the West Crocker Formation North Kota Kinabalu-Tuaran Area, Sabah, Malaysia

NASA Astrophysics Data System (ADS)

Mohamed, Azfar; Hadi Abd Rahman, Abdul; Suhaili Ismail, Mohd

2016-02-01

Newly outcrops exposed in the West Crocker Formation have led to the detail sedimentolgical analysis of the formation. Eight sedimentary facies have been recognised in which it was divided into three main groups: (1) sand-dominated facies (F1-F2), (2) poorly- sorted unit mixed sand and mud-dominated facies (F3), and (3) mud-dominated facies (F4-F5). These are: F1- graded sandstone (massive to planar laminated), F2-ripple-cross laminated, wavy and convolute lamination sandstone, F3-chaotic beds of mixed sandstone and mudstone blocks and clasts, F4-lenticular bedded of sandstone, and F5-shale. The studies of the formation has come out that it was deposited in a sand-rich submarine fan with specific location located at (1) inner fan channel-levee complex; (2) mid-fan channelised lobes, and (3) outer fan.

Derivation of S and Pb in phanerozoic intrusion-related metal deposits from neoproterozoic sedimentary pyrite, Great Basin, United States

USGS Publications Warehouse

Vikre, Peter G.; Poulson, S.R.; Koenig, Alan E.

2011-01-01

The thick (≤8 km), regionally extensive section of Neoproterozoic siliciclastic strata (terrigenous detrital succession, TDS) in the central and eastern Great Basin contains sedimentary pyrite characterized by mostly high δ34S values (−11.6 to 40.8‰, >70% exceed 10‰; 51 analyses) derived from reduction of seawater sulfate, and by markedly radiogenic Pb isotopes (207Pb/204Pb >19.2; 15 analyses) acquired from clastic detritus eroded from Precambrian cratonal rocks to the east-southeast. In the overlying Paleozoic section, Pb-Zn-Cu-Ag-Au deposits associated with Jurassic, Cretaceous, and Tertiary granitic intrusions (intrusion-related metal deposits) contain galena and other sulfide minerals with S and Pb isotope compositions similar to those of TDS sedimentary pyrite, consistent with derivation of deposit S and Pb from TDS pyrite. Minor element abundances in TDS pyrite (e.g., Pb, Zn, Cu, Ag, and Au) compared to sedimentary and hydrothermal pyrite elsewhere are not noticeably elevated, implying that enrichment in source minerals is not a precondition for intrusion-related metal deposits.Three mechanisms for transferring components of TDS sedimentary pyrite to intrusion-related metal deposits are qualitatively evaluated. One mechanism involves (1) decomposition of TDS pyrite in thermal aureoles of intruding magmas, and (2) aqueous transport and precipitation in thermal or fluid mixing gradients of isotopically heavy S, radiogenic Pb, and possibly other sedimentary pyrite and detrital mineral components, as sulfide minerals in intrusion-related metal deposits. A second mechanism invokes mixing and S isotope exchange in thermal aureoles of Pb and S exsolved from magma and derived from decomposition of sedimentary pyrite. A third mechanism entails melting of TDS strata or assimilation of TDS strata by crustal or mantle magmas. TDS-derived or assimilated magmas ascend, decompress, and exsolve a mixture of TDS volatiles, including isotopically heavy S and

Subglacial sedimentary basin characterization of Wilkes Land, East Antarctica via applied aerogeophysical inverse methods

NASA Astrophysics Data System (ADS)

Frederick, B. C.; Gooch, B. T.; Richter, T.; Young, D. A.; Blankenship, D. D.; Aitken, A.; Siegert, M. J.

2013-12-01

Topography, sediment distribution and heat flux are all key boundary conditions governing the stability of the East Antarctic ice sheet (EAIS). Recent scientific scrutiny has been focused on several large, deep, interior EAIS basins including the submarine basal topography characterizing the Aurora Subglacial Basin (ASB). Numerical ice sheet models require accurate deformable sediment distribution and lithologic character constraints to estimate overall flow velocities and potential instability. To date, such estimates across the ASB have been derived from low-resolution satellite data or historic aerogeophysical surveys conducted prior to the advent of GPS. These rough basal condition estimates have led to poorly-constrained ice sheet stability models for this remote 200,000 sq km expanse of the ASB. Here we present a significantly improved quantitative model characterizing the subglacial lithology and sediment in the ASB region. The product of comprehensive ICECAP (2008-2013) aerogeophysical data processing, this sedimentary basin model details the expanse and thickness of probable Wilkes Land subglacial sedimentary deposits and density contrast boundaries indicative of distinct subglacial lithologic units. As part of the process, BEDMAP2 subglacial topographic results were improved through the additional incorporation of ice-penetrating radar data collected during ICECAP field seasons 2010-2013. Detailed potential field data pre-processing was completed as well as a comprehensive evaluation of crustal density contrasts based on the gravity power spectrum, a subsequent high pass data filter was also applied to remove longer crustal wavelengths from the gravity dataset prior to inversion. Gridded BEDMAP2+ ice and bed radar surfaces were then utilized to establish bounding density models for the 3D gravity inversion process to yield probable sedimentary basin anomalies. Gravity inversion results were iteratively evaluated against radar along-track RMS deviation and

Permo-Carboniferous sedimentary basins related to the distribution of planetary cryptoblemes

USGS Publications Warehouse

Windolph, J.F.

1997-01-01

Massive/high velocity solar, galactic, and cosmic debris impacting the Earths surface may account for the enormous energy required for the formation of Permo-Carboniferous sedimentary basins and related mountain building orogenies. Analysis of satellite immagry, sea floor sonar, geophysical data, and geotectonic fabrics show a strong correlation throughout geologic time between sedimentary basin origin and planetary cryptoblemes. Cryptoblemes are subtile, multi-ringed, radial centric impact shock signatures covering the entire terrestrial surface and ocean floors, having a geometry and distribution strikingly similar to the surfaces of the lunar planetary bodies in the solar system. Investigations of Permo-Carboniferous basins show an intensely overprinted pattern of cryptoblemes coinciding with partial obliteration and elliptical compression of pre-existing basins and accompanying shock patterns. Large distorted cryptoblemes may incorporate thin skin deformation, localized sediment diagenesis, regional metamorphism, and juxtaposed exotic terrains. These data, related to basin morphogenic symmetry, suggest that large episodic impact events are the primary cause of tectonogenic features, geologic boundary formation and mass extinction episodes on the planet Earth. Plate tectonics may be only a slow moving, low energy secondary effect defined and set in motion by megacosmic accretion events. Permo-Carboniferous sediments of note are preserved or accumulated in relatively small rectangular to arcuate rift valleys and synclinal down warps, such as the Narraganset basin of Massachusetts, USA, and Paganzo basin in Argentina, S.A. These deposits and depocenters may originate from dynamic reinforcement/cancellation impact effects, as can be seen in the Basin Range of Nevada and Utah, USA. Large circular to oval sedimentary basins commonly include internal ring structures indicating post depositional subsidence and rebound adjustments with growth faulting, notable in the

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

PubMed

Bais, Preeti; Namburi, Sandeep; Gatti, Daniel M; Zhang, Xinyu; Chuang, Jeffrey H

2017-10-01

We present CloudNeo, a cloud-based computational workflow for identifying patient-specific tumor neoantigens from next generation sequencing data. Tumor-specific mutant peptides can be detected by the immune system through their interactions with the human leukocyte antigen complex, and neoantigen presence has recently been shown to correlate with anti T-cell immunity and efficacy of checkpoint inhibitor therapy. However computing capabilities to identify neoantigens from genomic sequencing data are a limiting factor for understanding their role. This challenge has grown as cancer datasets become increasingly abundant, making them cumbersome to store and analyze on local servers. Our cloud-based pipeline provides scalable computation capabilities for neoantigen identification while eliminating the need to invest in local infrastructure for data transfer, storage or compute. The pipeline is a Common Workflow Language (CWL) implementation of human leukocyte antigen (HLA) typing using Polysolver or HLAminer combined with custom scripts for mutant peptide identification and NetMHCpan for neoantigen prediction. We have demonstrated the efficacy of these pipelines on Amazon cloud instances through the Seven Bridges Genomics implementation of the NCI Cancer Genomics Cloud, which provides graphical interfaces for running and editing, infrastructure for workflow sharing and version tracking, and access to TCGA data. The CWL implementation is at: https://github.com/TheJacksonLaboratory/CloudNeo. For users who have obtained licenses for all internal software, integrated versions in CWL and on the Seven Bridges Cancer Genomics Cloud platform (https://cgc.sbgenomics.com/, recommended version) can be obtained by contacting the authors. jeff.chuang@jax.org. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

The role microbial sulfate reduction in the direct mediation of sedimentary authigenic carbonate precipitation

NASA Astrophysics Data System (ADS)

Turchyn, A. V.; Walker, K.; Sun, X.

2016-12-01

The majority of modern deep marine sediments are bathed in water that is undersaturated with respect to calcium carbonate. However, within marine sediments changing chemical conditions, driven largely by the microbial oxidation of organic carbon in the absence of oxygen, lead to supersaturated conditions and drive calcium carbonate precipitation. This sedimentary calcium carbonate is often called `authigenic carbonate', and is found in the form of cements and disseminated crystals within the marine sedimentary pile. As this precipitation of this calcium carbonate is microbially mediated, identifying authigenic carbonate within the geological record and understanding what information its geochemical and/or isotopic signature may hold is key for understanding its importance and what information it may contain past life. However, the modern controls on authigenic carbonate precipitation remain enigmatic because the myriad of microbially mediated reactions occurring within sediments both directly and indirectly impact the proton balance. In this submission we present data from 25 ocean sediment cores spanning the globe where we explore the deviation from the stoichiometrically predicted relationships among alkalinity, calcium and sulfate concentrations. In theory for every mol of organic carbon reduced by sulfate, two mol of alkalinity is produced, and to precipitate subsurface calcium carbonate one mol of calcium is used to consume two mol of alkalinity. We use this data with a model to explore changes in carbonate saturation state with depth below the seafloor. Alkalinity changes in the subsurface are poorly correlated with changes in calcium concentrations, however calcium concentrations are directly and tightly coupled to changes in sulfate concentrations in all studied sites. This suggests a direct role for sulfate reducing bacteria in the precipitation of subsurface carbonate cements.

Dichotomy Boundary at Aeolis Mensae, Mars: Fretted Terrain Developed in a Sedimentary Deposit

NASA Astrophysics Data System (ADS)

Irwin, R. P., III; Watters, T. R.; Howard, A. D.; Maxwell, T. A.; Craddock, R. A.

2003-03-01

Fretted terrain in Aeolis Mensae, Mars, developed in a sedimentary deposit. A thick, massive unit with a capping layer or duricrust overlies a more durable layered sequence. Wind, collapse, and minor fluvial activity contributed to degradation.

Benthic foraminiferal response to sedimentary disturbance in the Capbreton canyon (Bay of Biscay, NE Atlantic)

NASA Astrophysics Data System (ADS)

Duros, P.; Silva Jacinto, R.; Dennielou, B.; Schmidt, S.; Martinez Lamas, R.; Gautier, E.; Roubi, A.; Gayet, N.

2017-02-01

Living (Rose Bengal stained) and dead benthic foraminifera were investigated at 6 deep-sea sites sampled in the Capbreton canyon area (Bay of Biscay, France). Three sites were located along the canyon axis at 301 m, 983 m and 1478 m and 3 stations were positioned on adjacent terraces at 251 m, 894 m and 1454 m. Sedimentary features indicate that frequent sedimentary disturbances of different magnitudes occur along the Capbreton canyon axis and adjacent terraces. Such environmental conditions cause the presence of very particular benthic environments. Along the 6 studied sites, different foraminiferal responses to various sedimentary patterns are observed revealing the complexity of this canyon environment. Some sites (Gitan 3 (canyon axis), Gitan 5 (canyon axis) and Gitan 6 (terrace)) are characterized by moderate to low standing stocks and low diversity and are mainly dominated by pioneer taxa such as Fursenkoina brady, Reophax dentaliniformis and Technitella melo suggesting a recent response to turbidite deposits recorded at these sites. Others sites (Gitan 1 and Gitan 2) show extremely high standing stocks and are mainly dominated by the opportunistic Bolivina subaenariensis and Bulimina marginata. Such faunal characteristics belonging to a more advanced stage of ecosystem colonization indicates strongly food-enriched sediment but extremely unstable conditions. Moderate standing stocks and diverse assemblage composed of species such as Uvigerina mediterranea and U. peregrina has only been observed at the terrace site Gitan 4. More stable sedimentary conditions recorded at this terrace seem to be suitable to the development of a dense and diverse foraminiferal community. Numerous neritic allochtonous species were observed in the dead foraminiferal fauna. These allochthonous species mainly originate from shelf areas (<60 m).

87Sr/86Sr ratios in some eugeosynclinal sedimentary rocks and their bearing on the origin of granitic magma in orogenic belts

USGS Publications Warehouse

Peterman, Z.E.; Hedge, C.E.; Coleman, R.G.; Snavely, P.D.

1967-01-01

Rb and Sr contents and 87Sr/86Sr values were determined for samples of eugeosynclinal sedimentary rocks, mostly graywackes, from Oregon and California. These data are compatible with the theory of anataxis of eugeosynclinal sedimentary rocks in orogenic belts to produce granitic magmas provided that the melting occurs within several hundreds of m.y. after sedimentation. The low (87Sr/86Sr)0 values of the eugeosynclinal sedimentary rocks are related to the significant amounts of volcanogenic detritus present which probably were originally derived from the mantle. ?? 1967.

Recent benthic foraminifera and sedimentary facies distribution of the Abu Dhabi (United Arab Emirates) coastline

NASA Astrophysics Data System (ADS)

Fiorini, Flavia; Lokier, Stephen W.

2014-05-01

The distribution of benthic foraminifera and sedimentary facies from Recent coastline environments adjacent to the coastline of Abu Dhabi (UAE) was studied in detail with the aim to: 1) provide reliable analogs for understanding and interpreting the depositional environment of ancient shallow-marine sediments from the UAE; 2) assess any modifications in the distribution of benthic environments and sedimentary facies in an area affected by significant anthropogenic activities - particular construction and land reclamation. A total of 100 sea-floor sediment samples were collected in different shallow-marine sedimentary environments (nearshore shelf, beach-front, channels, ooid shoals, lagoon and mangals) close to the coastline of Abu Dhabi Island. Where possible, we revisited the sampling sites used in several studies conducted in the middle of last century (prior to any significant anthropogenic activities) to assess temporal changes in Recent benthic foraminifera and sedimentary facies distribution during the last 50 years. Five foraminiferal assemblages were recognized in the studied area. Species with a porcellaneous test mainly belonging to the genera Quinqueloculina, Triloculina, Spiroloculina, Sigmoilinita are common in all studied areas. Larger benthic foraminifera Peneroplis and Spirolina are particularly abundant in samples collected on seaweed. Hyaline foraminifera mostly belonging to the genera Elphidium, Ammonia, Bolivina and Rosalina are also common together with Miliolidae in the nearshore shelf and beach front. Agglutinated foraminifera (Clavulina, Textularia, Ammobaculites and Reophax) are present in low percentages. The species belonging to the genera Ammobaculites and Reophax are present only in the finest grain samples particularly in lagoons and mangal environments and have not been reported previously in the studied area. The majority of the ooid shoal sediments, the coarser sediments of the beach-front and samples collected in dredged channels

How to find the sedimentary archive of fluvial pollution in a bedrock-confined river reach

NASA Astrophysics Data System (ADS)

Elznicova, Jitka; Matys Grygar, Tomas; Kiss, Timea; Lelkova, Tereza; Balogh, Marton; Sikora, Martin

2016-04-01

The Ohre River springs in the Eastern Germany and it is a tributary of the Labe (Elbe) River in Northwest Bohemia. The river received pollution from several sources during the last five centuries. Most of the pollution sources located along the upper and middle reaches, where the depositional and erosional pattern of the river is highly variable. The upper part of the catchment consists of mainly felsic rocks and the river has a broad floodplain. The middle reach and its right-bank tributaries are deeply incised into the Doupovske Hory Mts., which consists of mafic volcanic rocks; whereas the left-bank tributaries are incised into intrusive and metamorphic rocks of the Krusne Hory Mts. (Ore mountains) with several local ore mines (Ag, Pb and U) in particular in around Olovi and Jachymov. Due to the geologic and geomorphologic complexity, deposition of historical sediments in the middle reach has been spatially limited and uneven, and anomalous background concentrations of risk elements are expected. As a consequence, in the middle reach of the Ohre River it is difficult to find a useful sedimentary archive of historical pollution, though it is desired for two main reasons: (1) to decipher the undocumented and poorly described pollution history from the Krusne Hory Mts. and (2) to better understand the retention of pollutants in the transport zones of a confined river system. Based on historical maps we identified a side-bar (35x320 m) in the middle reach of the river near Straz on Ohre and aimed to describe its formation, its recent erosion/deposition history and to evaluate its sedimentary archive value. In the first half of the 19th century it was an island separated from the valley edge by a side channel. Since then there has been no apparent lateral accretion of the bar (its shape has not been changed), but the upstream part of the side channel aggraded by a sediment plug. We evaluated the current bar topography and geomorphology by a detailed field survey

Pre-lithification tectonic foliation development in a clastic sedimentary rock sequence from SW Ireland

NASA Astrophysics Data System (ADS)

Meere, Patrick; Mulchrone, Kieran; McCarthy, David

2017-04-01

The current orthodoxy regarding the development of regionally developed penetrative tectonic cleavage fabrics in sedimentary rocks is that it postdates lithification of those rocks. It is well established that fabric development under these circumstances is achieved by a combination of grain rigid body rotation, crystal-plastic deformation and pressure solution. The latter is believed to be the primary mechanism responsible for the domainal nature of cleavage development commonly observed in low grade metamorphic rocks. While there have been advocates for the development of tectonic cleavages before host rock lithification these are currently viewed as essentially local aberrations without regional significance. In this study we combine new field observations with strain analysis, element mapping and modelling to characterise Acadian (>50%) crustal shortening in a Devonian clastic sedimentary sequence from the Dingle Peninsula of south west Ireland. Fabrics in these rocks reflect significant levels of tectonic shortening are a product of grain translation, rigid body rotation and repacking of intra- and extra-formational clasts during deformation of an unconsolidated clastic sedimentary sequence. There is an absence of the expected domainal cleavage structure and intra-clast deformation expected with conventional cleavage formation. This study requires geologists to consider the possibility such a mechanism contributing to tectonic strain in a wide range of geological settings and to look again at field evidence that indicates early sediment mobility during deformation.

The role of deep-water sedimentary processes in shaping a continental margin: The Northwest Atlantic

USGS Publications Warehouse

Mosher, David C.; Campbell, D.C.; Gardner, J.V.; Piper, D.J.W.; Chaytor, Jason; Rebesco, M.

2017-01-01

The tectonic history of a margin dictates its general shape; however, its geomorphology is generally transformed by deep-sea sedimentary processes. The objective of this study is to show the influences of turbidity currents, contour currents and sediment mass failures on the geomorphology of the deep-water northwestern Atlantic margin (NWAM) between Blake Ridge and Hudson Trough, spanning about 32° of latitude and the shelf edge to the abyssal plain. This assessment is based on new multibeam echosounder data, global bathymetric models and sub-surface geophysical information.The deep-water NWAM is divided into four broad geomorphologic classifications based on their bathymetric shape: graded, above-grade, stepped and out-of-grade. These shapes were created as a function of the balance between sediment accumulation and removal that in turn were related to sedimentary processes and slope-accommodation. This descriptive method of classifying continental margins, while being non-interpretative, is more informative than the conventional continental shelf, slope and rise classification, and better facilitates interpretation concerning dominant sedimentary processes.Areas of the margin dominated by turbidity currents and slope by-pass developed graded slopes. If sediments did not by-pass the slope due to accommodation then an above grade or stepped slope resulted. Geostrophic currents created sedimentary bodies of a variety of forms and positions along the NWAM. Detached drifts form linear, above-grade slopes along their crests from the shelf edge to the deep basin. Plastered drifts formed stepped slope profiles. Sediment mass failure has had a variety of consequences on the margin morphology; large mass-failures created out-of-grade profiles, whereas smaller mass failures tended to remain on the slope and formed above-grade profiles at trough-mouth fans, or nearly graded profiles, such as offshore Cape Fear.

A refined model of sedimentary rock cover in the southeastern part of the Congo basin from GOCE gravity and vertical gravity gradient observations

NASA Astrophysics Data System (ADS)

Martinec, Zdeněk; Fullea, Javier

2015-03-01

We aim to interpret the vertical gravity and vertical gravity gradient of the GOCE-GRACE combined gravity model over the southeastern part of the Congo basin to refine the published model of sedimentary rock cover. We use the GOCO03S gravity model and evaluate its spherical harmonic representation at or near the Earth's surface. In this case, the gradiometry signals are enhanced as compared to the original measured GOCE gradients at satellite height and better emphasize the spatial pattern of sedimentary geology. To avoid aliasing, the omission error of the modelled gravity induced by the sedimentary rocks is adjusted to that of the GOCO03S gravity model. The mass-density Green's functions derived for the a priori structure of the sediments show a slightly greater sensitivity to the GOCO03S vertical gravity gradient than to the vertical gravity. Hence, the refinement of the sedimentary model is carried out for the vertical gravity gradient over the basin, such that a few anomalous values of the GOCO03S-derived vertical gravity gradient are adjusted by refining the model. We apply the 5-parameter Helmert's transformation, defined by 2 translations, 1 rotation and 2 scale parameters that are searched for by the steepest descent method. The refined sedimentary model is only slightly changed with respect to the original map, but it significantly improves the fit of the vertical gravity and vertical gravity gradient over the basin. However, there are still spatial features in the gravity and gradiometric data that remain unfitted by the refined model. These may be due to lateral density variation that is not contained in the model, a density contrast at the Moho discontinuity, lithospheric density stratifications or mantle convection. In a second step, the refined sedimentary model is used to find the vertical density stratification of sedimentary rocks. Although the gravity data can be interpreted by a constant sedimentary density, such a model does not correspond to

Modern and Fossil Raindrop Impressions as a Lesson in Interpretation of Ancient Sedimentary Features.

ERIC Educational Resources Information Center

Pardi, Richard R.; Brickner, Dorene

1990-01-01

Procedures for duplicating fossil raindrop impressions are presented. The use of modern and fossil imprints as the basis for qualitative and quantitative lessons in the interpretation of ancient sedimentary features is discussed. (CW)

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation.

PubMed

Godec, Jernej; Tan, Yan; Liberzon, Arthur; Tamayo, Pablo; Bhattacharya, Sanchita; Butte, Atul J; Mesirov, Jill P; Haining, W Nicholas

2016-01-19

Gene-expression profiling has become a mainstay in immunology, but subtle changes in gene networks related to biological processes are hard to discern when comparing various datasets. For instance, conservation of the transcriptional response to sepsis in mouse models and human disease remains controversial. To improve transcriptional analysis in immunology, we created ImmuneSigDB: a manually annotated compendium of ∼5,000 gene-sets from diverse cell states, experimental manipulations, and genetic perturbations in immunology. Analysis using ImmuneSigDB identified signatures induced in activated myeloid cells and differentiating lymphocytes that were highly conserved between humans and mice. Sepsis triggered conserved patterns of gene expression in humans and mouse models. However, we also identified species-specific biological processes in the sepsis transcriptional response: although both species upregulated phagocytosis-related genes, a mitosis signature was specific to humans. ImmuneSigDB enables granular analysis of transcriptomic data to improve biological understanding of immune processes of the human and mouse immune systems. Copyright © 2016 Elsevier Inc. All rights reserved.

A microscopy-based screen employing multiplex genome sequencing identifies cargo-specific requirements for dynein velocity

PubMed Central

Tan, Kaeling; Roberts, Anthony J.; Chonofsky, Mark; Egan, Martin J.; Reck-Peterson, Samara L.

2014-01-01

The timely delivery of membranous organelles and macromolecules to specific locations within the majority of eukaryotic cells depends on microtubule-based transport. Here we describe a screening method to identify mutations that have a critical effect on intracellular transport and its regulation using mutagenesis, multicolor-fluorescence microscopy, and multiplex genome sequencing. This screen exploits the filamentous fungus Aspergillus nidulans, which has many of the advantages of yeast molecular genetics but uses long-range microtubule-based transport in a manner more similar to metazoan cells. Using this method, we identified seven mutants that represent novel alleles of components of the intracellular transport machinery: specifically, kinesin-1, cytoplasmic dynein, and the dynein regulators Lis1 and dynactin. The two dynein mutations identified in our screen map to dynein's AAA+ catalytic core. Single-molecule studies reveal that both mutations reduce dynein's velocity in vitro. In vivo these mutants severely impair the distribution and velocity of endosomes, a known dynein cargo. In contrast, another dynein cargo, the nucleus, is positioned normally in these mutants. These results reveal that different dynein functions have distinct stringencies for motor performance. PMID:24403603

The influence of oxic degradation on the sedimentary biomarker record II. Evidence from Arabian Sea sediments

NASA Astrophysics Data System (ADS)

Sinninghe Damsté, Jaap S.; Rijpstra, W. Irene C.; Reichart, Gert-jan

2002-09-01

Biomarker accumulation rates in nine different time slices in three cores on and at the foot of a submarine high in the northern Arabian Sea (the Murray Ridge) were measured to investigate the influence of oxygen exposure time on the preservation of biomarker signals in the sedimentary record. All three sites experienced the same history of surface water productivity and sediment supply but had different bottom-water redox conditions due to their different positions (in, just below, well below) relative to the present location of the intense oxygen minimum zone (OMZ). Past variations in the intensity and position of the OMZ, known from a wide variety of proxies (TOC content, distribution and abundance of planktonic and benthic foraminifera and pteropods, trace metals, and δ 15N), enabled specific biomarker (i.e., n-alkanes, steroids, alkenones, alkyldiols, C 26 fatty acid, loliolide, biphytane diols, and archaeal tetraether lipids) accumulation rates at contrasting oxygen exposure times to be compared. The results indicate that these accumulation rates can vary by more than an order of magnitude for marine biomarkers. In addition, there are significant differences in the degree of oxic degradation of different types of biomarkers: Terrestrial n-alkanes are much more resistant than alkenones and n-alkyl diols, which are more refractory than steroids and biphytane diols. These differences in degree of oxic degradation indicate that biomarker distributions will change on increasing exposure to oxygen. These findings have a significant impact on the application of biomarkers to sedimentary settings in which oxygen exposure time is likely to change significantly.

Rare earth elements in sedimentary phosphate deposits: Solution to the global REE crisis?

USGS Publications Warehouse

Emsbo, Poul; McLaughlin, Patrick I.; Breit, George N.; du Bray, Edward A.; Koenig, Alan E.

2015-01-01

The critical role of rare earth elements (REEs), particularly heavy REEs (HREEs), in high-tech industries has created a surge in demand that is quickly outstripping known global supply and has triggered a worldwide scramble to discover new sources. The chemical analysis of 23 sedimentary phosphate deposits (phosphorites) in the United States demonstrates that they are significantly enriched in REEs. Leaching experiments using dilute H2SO4 and HCl, extracted nearly 100% of their total REE content and show that the extraction of REEs from phosphorites is not subject to the many technological and environmental challenges that vex the exploitation of many identified REE deposits. Our data suggest that phosphate rock currently mined in the United States has the potential to produce a significant proportion of the world's REE demand as a byproduct. Importantly, the size and concentration of HREEs in some unmined phosphorites dwarf the world's richest REE deposits. Secular variation in phosphate REE contents identifies geologic time periods favorable for the formation of currently unrecognized high-REE phosphates. The extraordinary endowment, combined with the ease of REE extraction, indicates that such phosphorites might be considered as a primary source of REEs with the potential to resolve the global REE (particularly for HREE) supply shortage.

Alteration mineralogy and geochemistry as an exploration tool for detecting basement heat sources in sedimentary basins

NASA Astrophysics Data System (ADS)

Uysal, Tonguc; Gasparon, Massimo; van Zyl, Jacobus; Wyborn, Doone

2010-05-01

The Cooper Basin located in South Australia and Queensland hosts some of the hottest granites in the world at economic drilling depths (240°C at 3.5 km). Investigating the mechanism of heat-producing element enrichment in the Cooper Basin granite is crucial for understanding hot-dry rock geothermal systems and developing exploration strategies. Trace element (by ICP-MS) and stable isotope geochemistry of whole rock granite samples and hydrothermal phyllosilicate alteration minerals separated from the granite and overlying sandstones and mudstones of the Cooper Basin were examined in detail. Granite core samples from relatively shallow depths in Moomba 1 and Big Lake 1 are strongly altered with pervasive sericite (illite) and quartz precipitation, probably associated with intense micro-fracturing and veining. The intensity of hydrothermal alteration is less in deeper samples from Mcleod 1, Jolokia and Habanero 1. Highly altered granites from former holes are substantially enriched in lithophile elements, particularly in Cs, Rb, Be, Th, U and rare earth elements (REE) relative to the upper continental crust (UCC). U and Th contents with concentrations of up to 30 and 144 ppm, respectively, are 10 and 13 times higher than those of the UCC. Comparison of the trace element composition of the same samples dissolved by open beaker acid digestion and high-pressure acid bomb digestion (to dissolve zircon) shows that zircon is not the main repository of U and Th in the Cooper Basin granite. Instead, we propose that the enrichment of heat-producing elements was promoted by a regional hydrothermal event leading to the precipitation of U and Th- bearing minerals such as illite, K-feldspar and thorite. Crystallinity index (illite crystallinity) of the sericite indicates hydrothermal temperatures ranging from 250°C (in Moomba 1 and Big Lake 1) to 350°C (in McLeod 1 and Jolokia 1). In the overlying sedimentary rocks, crystallinity of authigenic illites translates to lower

Use of structural geology in exploration for and mining of sedimentary rock-hosted Au deposits

USGS Publications Warehouse

Peters, Stephen G.

2001-01-01

Structural geology is an important component in regional-, district- and orebody-scale exploration and development of sedimentary rock-hosted Au deposits.Identification of timing of important structural events in an ore district allows analysis and classification of fluid conduits and construction of genetic models for ore formation.The most practical uses of structural geology deal with measurement and definition of various elements that comprise orebodies, which can then be directly applied to ore-reserve estimation,ground control,grade control, safety issues,and mine planning.District- and regional-scale structural studies are directly applicable to long-term strategic planning,economic analysis,and land ownership. Orebodies in sedimentary rock-hosted Au deposits are discrete, hypogene, epigenetic masses usually hosted in a fault zone,breccia mass, or lithologic bed or unit. These attributes allow structural geology to be directly applied to the mining and exploration of sedimentary rock-hosted Au deposits. Internal constituents in orebodies reflect unique episodes relating to ore formation.The main internal constituents in orebodies are ore minerals, gangue, and alteration minerals that usually are mixed with one another in complex patterns, the relations among which may be used to interpret the processes of orebody formation and control.Controls of orebody location and shape usually are due to structural dilatant zones caused by changes in attitude, splays, lithologic contacts,and intersections of the host conduit or unit.In addition,conceptual parameters such as district fabric,predictable distances, and stacking also are used to understand the geometry of orebodies.Controls in ore districts and location and geometry of orebodies in ore districts can be predicted to various degrees by using a number of qualitative concepts such as internal and external orebody plunges,district plunge, district stacking, conduit classification, geochemical, geobarometric and

Hg concentrations from Late Triassic and Early Jurassic sedimentary rocks: first order similarities and second order depositional and diagenetic controls

NASA Astrophysics Data System (ADS)

Yager, J. A.; West, A. J.; Bergquist, B. A.; Thibodeau, A. M.; Corsetti, F. A.; Berelson, W.; Bottjer, D. J.; Rosas, S.

2016-12-01

Mercury concentrations in sediments have recently gained prominence as a potential tool for identifying large igneous province (LIP) volcanism in sedimentary records. LIP volcanism coincides with several mass extinctions during the Phanerozoic, but it is often difficult to directly tie LIP activity with the record of extinction in marine successions. Here, we build on mercury concentration data reported by Thibodeau et al. (Nature Communications, 7:11147, 2016) from the Late Triassic and Early Jurassic of New York Canyon, Nevada, USA. Increases in Hg concentrations in that record were attributed to Central Atlantic Magmatic Province (CAMP) activity in association with the end-Triassic mass extinction. We expand the measured section from New York Canyon and report new mercury concentrations from Levanto, Peru, where dated ash beds provide a discrete chronology, as well as St. Audrie's Bay, UK, a well-studied succession. We correlate these records using carbon isotopes and ammonites and find similarities in the onset of elevated Hg concentrations and Hg/TOC in association with changes in C isotopes. We also find second order patterns that differ between sections and may have depositional and diagenetic controls. We will discuss these changes within a sedimentological framework to further understand the controls on Hg concentrations in sedimentary records and their implications for past volcanism.

Sedimentary Evolution of Marginal Ganga Foreland Basin during the Late Pleistocene

NASA Astrophysics Data System (ADS)

Ghosh, R.; Srivastava, P.; Shukla, U. K.

2017-12-01

Ganga foreland basin, an asymmetrical basin, was formed as result of plate-plate collision during middle Miocene. A major thrust event occurred during 500 ka when upper Siwalik sediments were uplifted and the modern Ganga foreland basin shifted towards craton, making a more wide and deep basin. The more distal part of this basin, south of axial river Yamuna, records fluvial sedimentary packages that helps to understand dynamics of peripheral bulge during the late Quaternary. Sedimentary architecture in conjunction with chemical index of alteration (CIA), paleocurrent direction and optically stimulated dating (OSL) from 19 stratigraphic sections helped reconstructing the variations in depositional environments vis-à-vis climate change and peripheral bulge tectonics. Three major units (i) paleosol; (ii) cratonic gravel; (iii) interfluve succession were identified. The lower unit-I showing CIA values close to 70-80 and micro-morphological features of moderately well-developed pedogenic unit that shows development of calcrete, rhizoliths, and mineralized organic matter in abundance. This is a regional paleosols unit and OSL age bracketed 200 ka. This is unconformably overlain by unit-II, a channelized gravel composed of sub-angular to sub-rounded clasts of granite, quartz, quartzite, limestone and calcrete. The gravel have low CIA value up to 55, rich in vertebrate fossil assemblages and mean paleocurrent vector direction is NE, which suggesting deposition by a fan of a river draining craton into foreland. This unit is dated between 100 ka and 54 ka. The top unit-III, interfluve succession of 10-15 m thick is composed of dark and light bands of sheet like deposit of silty clay to clayey silt comprises sand lenses of red to grey color and displaying top most OSL age is 12 ka. The basal mature paleosol signifies a humid climate developed under low subsidence rate at >100 ka. After a hiatus represented by pedogenic surface deposition of unit-II (gravel) suggests uplift

Assessment of undiscovered conventional oil and gas resources of the Western Canada Sedimentary Basin, Canada, 2012

USGS Publications Warehouse

Higley, Debra K.

2013-01-01

The U.S. Geological Survey recently completed a geoscience-based assessment of undiscovered oil and gas resources of provinces within the Western Canada Sedimentary Basin. The Western Canada Sedimentary Basin primarily comprises the (1) Alberta Basin Province of Alberta, eastern British Columbia, and the southwestern Northwest Territories; (2) the Williston Basin Province of Saskatchewan, southeastern Alberta, and southern Manitoba; and (3) the Rocky Mountain Deformed Belt Province of western Alberta and eastern British Columbia. This report is part of the U.S. Geological Survey World Petroleum Resources Project assessment of priority geologic provinces of the world. The assessment was based on geoscience elements that define a total petroleum system (TPS) and associated assessment unit(s). These elements include petroleum source rocks (geochemical properties and petroleum generation, migration, and accumulation), reservoir description (reservoir presence, type, and quality), and petroleum traps (trap and seal types, and timing of trap and seal formation relative to petroleum migration). Using this framework, the Elk Point-Woodbend Composite TPS, Exshaw-Fernie-Mannville Composite TPS, and Middle through Upper Cretaceous Composite TPS were defined, and four conventional assessment units within the total petroleum systems were quantitatively assessed for undiscovered resources in the Western Canada Sedimentary Basin.

Sedimentary response to halfgraben dipslope faults evolution -Billefjorden Trough, Svalbard.

NASA Astrophysics Data System (ADS)

Smyrak-Sikora, Aleksandra; Kristensen, Jakob B.; Braathen, Alvar; Johannessen, Erik P.; Olaussen, Snorre; Sandal, Geir; Stemmerik, Lars

2017-04-01

Fault growth and linkage into larger segments has profound effect on the sedimentary architecture of rift basins. The uplifted Billefjorden Through located in central Spitsbergen is an excellent example of half-graben basin development. Detailed sedimentological and structural investigations supported by helicopter and ground base lidar scans along with photogrammetry analysis have been used to improve our understanding of the sedimentary response to faulting and along strike variations in footwall uplift and hanging wall subsidence. The early syn-rift basin fill, the Serpukhovian to Bashkirian Hultberget Formation and the Bashkirian Ebbaelven Member consists of fluvial to deltaic sandstones with minor marine incursions. During this early stage tens to hundred- meters-scale syn-tectonic faults disrupted the dipslope, and created local hanging wall depocentres where sediments were arrested. Changes in fluvial drainage pattern, development of small lacustrine basins along the faults, and the sharp based boundaries of some facies associations are interpreted as response to activity along these, mostly antithetic faults. The basin fill of the late syn-rift stage is composed of shallow marine to tidal mixed evaporite -carbonate facies in the hanging wall i.e. the Bashkirian Trikolorfjellet Member and the Moscovian Minkenfjellet Formation. These sediments interfinger with thick alluvial fan deposits outpouring from relay ramps on the master fault i.e. drainage from the footwall. The carbonate-evaporite cycles deposited on the hanging wall responded to both the eustatic sea level variations and tectonic movements in the rift basin. Intra-basinal footwall uplift of the dipslope controlled development of an internal unconformity and resulted in dissolution of the gypsum to produce stratiform breccia. In contrast thick gypsum-rich subbasins are preserved locally in hanging wall positions where they were protected from the erosion. The syn rift basin fill is capped by post

Controls and variability of solute and sedimentary fluxes in Antarctic and sub-Antarctic Environments

NASA Astrophysics Data System (ADS)

Zwolinski, Zbigniew

2015-04-01

The currently prepared SEDIBUD Book on "Source-to-Sink Fluxes in Undisturbed Cold Environments" (edited by Achim A. Beylich, John C. Dixon and Zbigniew Zwolinski and published by Cambridge University Press) is summarizing and synthesizing the achievements of the International Association of Geomorphologists` (I.A.G./A.I.G.) Working Group SEDIBUD (Sediment Budgets in Cold Environments), which has been active since 2005 (http://www.geomorph.org/wg/wgsb.html). The book comprises five parts. One of them is part about sub-Antarctic and Antarctic Environments. This part "Sub-Antarctic and Antarctic Environments" describes two different environments, namely oceanic and continental ones. Each part contains results of research on environmental drivers and rates of contemporary solute and sedimentary fluxes in selected sites. Apart from describing the environmental conditions of the whole continent of Antarctica and sub-Antarctic islands (Zb.Zwolinski, M.Kejna, A.N.Lastochkin, A.Zhirov, S.Boltramovich) this part of the book characterizes terrestrial polar oases free from multi-year ice and snow covers (Zb.Zwolinski). The detailed results of geoecological and sedimentological research come from different parts of Antarctica. Antarctic continental shelf (E.Isla) is an example of sub-Antarctic oceanic environment. South Shetlands, especially King George Island (Zb.Zwolinski, M.Kejna, G.Rachlewicz, I.Sobota, J.Szpikowski), is an example of sub-Antarctic terrestrial environment. Antarctic Peninsula (G.Vieira, M.Francelino, J.C.Fernandes) and surroundings of McMurdo Dry Valleys (W.B.Lyons, K.A.Welch, J.Levy, A.Fountain, D.McKnight) are examples of Antarctic continental environments. The key goals of the Antarctic and sub-Antarctic book chapters are following: (i) identify the main environmental drivers and rates of contemporary solute and sedimentary fluxes, and (ii) model possible effects of projected climate change on solute and sedimentary fluxes in cold climate environments

Laboratory simulated hydrothermal alteration of sedimentary organic matter from Guaymas Basin, Gulf of California. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Leif, Roald N.

1993-01-01

High temperature alteration of sedimentary organic matter associated with marine hydrothermal systems involves complex physical and chemical processes that are not easily measured in most natural systems. Many of these processes can be evaluated indirectly by examining the geochemistry of the hydrothermal system in the laboratory. In this investigation, an experimental organic geochemical approach to studying pyrolysis of sedimentary organic matter is applied to the hydrothermal system in the Guaymas Basin, Gulf of California. A general survey of hydrothermal oils and extractable organic matter (bitumen) in hydrothermally altered sediments identified several homologous series of alkanones associated with a high temperature hydrothermal origin. The alkanones range in carbon number from C11 to C30 with no carbon number preference. Alkan-2-ones are in highest concentrations, with lower amounts of 3-, 4-, 5- (and higher) homologs. The alkanones appear to be pyrolysis products synthesized under extreme hydrothermal conditions. Hydrous pyrolysis and confinement pyrolysis experiments were performed to simulate thermally enhanced diagenetic and catagenetic changes in the immature sedimentary organic matter. The extent of alteration was measured by monitoring the n-alkanes, acyclic isoprenoids, steroid and triterpenoid biomarkers, polycyclic aromatic hydrocarbons and alkanones. The results were compared to bitumen extracts from sediments which have been naturally altered by a sill intrusion and accompanied hydrothermal fluid flow. These pyrolysis experiments duplicated many of the organic matter transformations observed in the natural system. Full hopane and sterane maturation occurred after 48 hr in experiments at 330 deg C with low water/rock mass ratios (0.29). A variety of radical and ionic reactions are responsible for the organic compound conversions which occur under extreme hydrothermal conditions. Short duration pyrolysis experiments revealed that a portion of the

An HTS-compatible 3D colony formation assay to identify tumor-specific chemotherapeutics.

PubMed

Horman, Shane R; To, Jeremy; Orth, Anthony P

2013-12-01

There has been increasing interest in the development of cellular behavior models that take advantage of three-dimensional (3D) cell culture. To enable assessment of differential perturbagen impacts on cell growth in 2D and 3D, we have miniaturized and adapted for high-throughput screening (HTS) the soft agar colony formation assay, employing a laser-scanning cytometer to image and quantify multiple cell types simultaneously. The assay is HTS compatible, providing high-quality, image-based, replicable data for multiple, co-cultured cell types. As proof of concept, we subjected colorectal carcinoma colonies in 3D soft agar to a mini screen of 1528 natural product compounds. Hit compounds from the primary screen were rescreened in an HTS 3D co-culture matrix containing colon stromal cells and cancer cells. By combining tumor cells and normal, nontransformed colon epithelial cells in one primary screening assay, we were able to obtain differential IC50 data, thereby distinguishing tumor-specific compounds from general cytotoxic compounds. Moreover, we were able to identify compounds that antagonized tumor colony formation in 3D only, highlighting the importance of this assay in identifying agents that interfere with 3D tumor structural growth. This screening platform provides a fast, simple, and robust method for identification of tumor-specific agents in a biologically relevant microenvironment.

Using giant piston coring within IODP to track past earthquakes in the sedimentary record along the Japan Trench

NASA Astrophysics Data System (ADS)

Strasser, Michael

2017-04-01

"Submarine paleoseismology" is a promising approach to investigate deposits from the deep sea, where earthquakes leave traces preserved in stratigraphic succession. The concept of studying sedimentary event deposits for reconstructing past earthquake history and related impacts to the marine environment is increasingly being applied in various settings. However, at present we lack comprehensive data sets that allow conclusive distinctions between quality and completeness of the paleoseismic archives, as they may relate to different sediment transport, erosion and deposition processes vs. variability of intrinsic seismogenic behavior across different segments. Nevertheless, many recent studies, which are mostly based on conventional 10-m-long cores, demonstrate the potential of the research concept. With ECORD opening their mission specific platform approach to include giant piston coring within IODP, a new horizon has opened up for multi-coring expeditions fully dedicated to the rapidly growing field of submarine paleoseismology. IODP is uniquely positioned to address the complex feedback mechanisms between earthquake shaking and its manifestation in the marine archive, decipher related mass fluxes from the shallow to the deep see and to eventually provide longer records to constrain earthquake recurrence far beyond historical catalogues. Initially building on what sedimentary deposits were generated from the 2011 M9 Tohoku-oki earthquake, the Japan Trench is a promising study area to investigate earthquake-triggered sediment remobilization processes and how they become embedded in the stratigraphic record, and has thus been identified as a primary target for proposing giant piston coring within IODP. In this presentation we summarize recent results and available site survey data collected since the 2011 earthquake, comprising >50, 5-10m long piston and gravity cores from (i) trench-fill and graben-fill basin across the entire trench axis from 36° to 40.3° N (ii

Aptian-Albian boundary in Central Southern Atlas of Tunisia: New tectono-sedimentary facts

NASA Astrophysics Data System (ADS)

Ghanmi, Mohamed Abdelhamid; Barhoumi, Amine; Ghanmi, Mohamed; Zargouni, Fouad

2017-08-01

The Aptian-Albian boundary preserves one of the most important events in Central-Southern Atlas of Tunisia, which belongs to the Southern Tethyan margin. A major sedimentary break was recorded between Early Aptian and Albian series in Bouhedma-Boudouaou Mountains. This major hiatus probably linked to the ''Austrian phase'' and to the Aptian and Albian ''Crisis'' testify a period of major tectonic events. In this paper, field observations on the Mid-Cretaceous stratigraphy combined with seismic profile interpretation were used for the first time to characterize the Aptian-Albian boundary in Central-Southern Atlas of Tunisia. Our new results reveal that Aptian-Albian boundary marks a critical interval not only in Maknassy-Mezzouna orogenic system but also in the Tunisian Atlas. Furthermore, Aptian-Albian series outcrop is marked by the important sedimentary gaps as well as a dramatic thickness change from West to East and predominately from North to South. This is linked to the extensional tectonic features which characterize all the Central-Southern Atlas of Tunisia.

Sedimentary rock-hosted Au deposits of the Dian-Qian-Gui area, Guizhou, and Yunnan Provinces, and Guangxi District, China

USGS Publications Warehouse

Peters, S.G.; Jiazhan, H.; Zhiping, L.; Chenggui, J.

2007-01-01

Sedimentary rock-hosted Au deposits in the Dian-Qian-Gui area in southwest China are hosted in Paleozoic and early Mesozoic sedimentary rocks along the southwest margin of the Yangtze (South China) Precambrian craton. Most deposits have characteristics similar to Carlin-type Au deposits and are spatially associated, on a regional scale, with deposits of coal, Sb, barite, As, Tl, and Hg. Sedimentary rock-hosted Au deposits are disseminated stratabound and(or) structurally controlled. The deposits have many similar characteristics, particularly mineralogy, geochemistry, host rock, and structural control. Most deposits are associated with structural domes, stratabound breccia bodies, unconformity surfaces or intense brittle-ductile deformation zones, such as the Youjiang fault system. Typical characteristics include impure carbonate rock or calcareous and carbonaceous host rock that contains disseminated pyrite, marcasite, and arsenopyrite-usually with ??m-sized Au, commonly in As-rich rims of pyrite and in disseminations. Late realgar, orpiment, stibnite, and Hg minerals are spatially associated with earlier forming sulfide minerals. Minor base-metal sulfides, such as galena, sphalerite, chalcopyrite, and Pb-Sb-As-sulphosalts also are present. The rocks locally are silicified and altered to sericite-clay (illite). Rocks and(or) stream-sediment geochemical signatures typically include elevated concentrations of As, Sb, Hg, Tl, and Ba. A general lack of igneous rocks in the Dian-Qian-Gui area implies non-pluton-related, ore forming processes. Some deposits contain evidence that sources of the metal may have originated in carbonaceous parts of the sedimentary pile or other sedimentary or volcanic horizons. This genetic process may be associated with formation and mobilization of petroleum and Hg in the region and may also be related to As-, Au-, and Tl-bearing coal horizons. Many deposits also contain textures and features indicative of strong structural control by

A forward chemical screen in zebrafish identifies a retinoic acid derivative with receptor specificity.

PubMed

Das, Bhaskar C; McCartin, Kellie; Liu, Ting-Chun; Peterson, Randall T; Evans, Todd

2010-04-02

Retinoids regulate key developmental pathways throughout life, and have potential uses for differentiation therapy. It should be possible to identify novel retinoids by coupling new chemical reactions with screens using the zebrafish embryonic model. We synthesized novel retinoid analogues and derivatives by amide coupling, obtaining 80-92% yields. A small library of these compounds was screened for bioactivity in living zebrafish embryos. We found that several structurally related compounds significantly affect development. Distinct phenotypes are generated depending on time of exposure, and we characterize one compound (BT10) that produces specific cardiovascular defects when added 1 day post fertilization. When compared to retinoic acid (ATRA), BT10 shows similar but not identical changes in the expression pattern of embryonic genes that are known targets of the retinoid pathway. Reporter assays determined that BT10 interacts with all three RAR receptor sub-types, but has no activity for RXR receptors, at all concentrations tested. Our screen has identified a novel retinoid with specificity for retinoid receptors. This lead compound may be useful for manipulating components of retinoid signaling networks, and may be further derivatized for enhanced activity.

Functional genomics identifies specific vulnerabilities in PTEN-deficient breast cancer.

PubMed

Tang, Yew Chung; Ho, Szu-Chi; Tan, Elisabeth; Ng, Alvin Wei Tian; McPherson, John R; Goh, Germaine Yen Lin; Teh, Bin Tean; Bard, Frederic; Rozen, Steven G

2018-03-22

-SSL patterns of activity in a large proportion of PTEN-deficient breast cancer cell lines and are potential specific vulnerabilities in PTEN-deficient breast cancer. Furthermore, the NUAK1 PTEN-SSL vulnerability identified by RNA interference techniques can be recapitulated and exploited using the small molecule kinase inhibitor HTH-01-015. Thus, NUAK1 inhibition may be an effective strategy for precision treatment of PTEN-deficient breast tumors.

Predicted sedimentary record of reflected bores

USGS Publications Warehouse

Higman, B.; Gelfenbaum, G.; Lynett, P.; Moore, A.; Jaffe, B.

2007-01-01

Where a steep slope blocks an inrushing tsunami, the tsunami commonly reverses direction as a reflected bore. A simple method for relating vertical and horizontal variation in sediment size to output from numerical models of depth-averaged tsunami flow yields predictions about the sedimentary record of reflected bores: 1. Near the reflector, a abrupt slowing of the flow as the reflected bore passes is recorded by a normally graded layer that drapes preexisting topography. 2. At intermediate distances from the reflector, the deposit consists of a single normally graded bed deposited preferentially in depressions, possibly including a sharp fine-over-coarse contact. This contact records a brief period of erosion as the front of the reflected bore passes. 3. Far seaward of the reflector, grading in the deposit includes two distinct normally graded beds deposited preferentially in depressions separated by an erosional unconformity. The second normally graded bed records the reflected bore.

Genome-wide oxidative bisulfite sequencing identifies sex-specific methylation differences in the human placenta

PubMed Central

Johnson, Michelle D; Dopierala, Justyna

2018-01-01

ABSTRACT DNA methylation is an important regulator of gene function. Fetal sex is associated with the risk of several specific pregnancy complications related to placental function. However, the association between fetal sex and placental DNA methylation remains poorly understood. We carried out whole-genome oxidative bisulfite sequencing in the placentas of two healthy female and two healthy male pregnancies generating an average genome depth of coverage of 25x. Most highly ranked differentially methylated regions (DMRs) were located on the X chromosome but we identified a 225 kb sex-specific DMR in the body of the CUB and Sushi Multiple Domains 1 (CSMD1) gene on chromosome 8. The sex-specific differential methylation pattern observed in this region was validated in additional placentas using in-solution target capture. In a new RNA-seq data set from 64 female and 67 male placentas, CSMD1 mRNA was 1.8-fold higher in male than in female placentas (P value = 8.5 × 10−7, Mann-Whitney test). Exon-level quantification of CSMD1 mRNA from these 131 placentas suggested a likely placenta-specific CSMD1 isoform not detected in the 21 somatic tissues analyzed. We show that the gene body of an autosomal gene, CSMD1, is differentially methylated in a sex- and placental-specific manner, displaying sex-specific differences in placental transcript abundance. PMID:29376485

Applying Binary Forecasting Approaches to Induced Seismicity in the Western Canada Sedimentary Basin

NASA Astrophysics Data System (ADS)

Kahue, R.; Shcherbakov, R.

2016-12-01

The Western Canada Sedimentary Basin has been chosen as a focus due to an increase in the recent observed seismicity there which is most likely linked to anthropogenic activities related to unconventional oil and gas exploration. Seismicity caused by these types of activities is called induced seismicity. The occurrence of moderate to larger induced earthquakes in areas where critical infrastructure is present can be potentially problematic. Here we use a binary forecast method to analyze past seismicity and well production data in order to quantify future areas of increased seismicity. This method splits the given region into spatial cells. The binary forecast method used here has been suggested in the past to retroactively forecast large earthquakes occurring globally in areas called alarm cells. An alarm cell, or alert zone, is a bin in which there is a higher likelihood for earthquakes to occur based on previous data. The first method utilizes the cumulative Benioff strain, based on earthquakes that had occurred in each bin above a given magnitude over a time interval called the training period. The second method utilizes the cumulative well production data within each bin. Earthquakes that occurred within an alert zone in the retrospective forecast period contribute to the hit rate, while alert zones that did not have an earthquake occur within them in the forecast period contribute to the false alarm rate. In the resulting analysis the hit rate and false alarm rate are determined after optimizing and modifying the initial parameters using the receiver operating characteristic diagram. It is found that when modifying the cell size and threshold magnitude parameters within various training periods, hit and false alarm rates are obtained for specific regions in Western Canada using both recent seismicity and cumulative well production data. Certain areas are thus shown to be more prone to potential larger earthquakes based on both datasets. This has implications

Complex Rayleigh Waves Produced by Shallow Sedimentary Basins and their Potential Effects on Mid-Rise Buildings

NASA Astrophysics Data System (ADS)

Kohler, M. D.; Castillo, J.; Massari, A.; Clayton, R. W.

2017-12-01

Earthquake-induced motions recorded by spatially dense seismic arrays in buildings located in the northern Los Angeles basin suggest the presence of complex, amplified surface wave effects on the seismic demand of mid-rise buildings. Several moderate earthquakes produced large-amplitude, seismic energy with slow shear-wave velocities that cannot be explained or accurately modeled by any published 3D seismic velocity models or by Vs30 values. Numerical experiments are conducted to determine if sedimentary basin features are responsible for these rarely modeled and poorly documented contributions to seismic demand computations. This is accomplished through a physics-based wave propagation examination of the effects of different sedimentary basin geometries on the nonlinear response of a mid-rise structural model based on an existing, instrumented building. Using two-dimensional finite-difference predictive modeling, we show that when an earthquake focal depth is near the vertical edge of an elongated and relatively shallow sedimentary basin, dramatically amplified and complex surface waves are generated as a result of the waveguide effect introduced by this velocity structure. In addition, for certain source-receiver distances and basin geometries, body waves convert to secondary Rayleigh waves that propagate both at the free-surface interface and along the depth interface of the basin that show up as multiple large-amplitude arrivals. This study is motivated by observations from the spatially dense, high-sample-rate acceleration data recorded by the Community Seismic Network, a community-hosted strong-motion network, currently consisting of hundreds of sensors located in the southern California area. The results provide quantitative insight into the causative relationship between a sedimentary basin shape and the generation of Rayleigh waves at depth, surface waves at the free surface, scattered seismic energy, and the sensitivity of building responses to each of

Provenance and paleo-weathering of Tertiary accretionary prism-forearc sedimentary deposits of the Andaman Archipelago, India

NASA Astrophysics Data System (ADS)

Awasthi, Neeraj

2017-12-01

In order to understand the provenance and tectono-sedimentary processes occurring in the Andaman Subduction Zone (ASZ), the Late Cretaceous to Oligocene sedimentary records from the Andaman Islands have been studied. These sedimentary records are considered to have preserved the history of the India-Asia collision, evolution of the Himalayas, climatic development and palaeo-drainage reorganizations on the Indian and Asian plates. About 47 sandstones and mudstones (shales and siltstones) samples were analyzed for whole rock major, trace, and rare earth element compositions. The geochemical results suggest mixing of sediments derived from the mafic igneous sources comprising local ophiolites and volcanic arc of the ASZ and an older Archean to Proterozoic age felsic cratonic source with compositions similar to average granodiorite or upper continental crustal sources. The compositions were dominated by sources of the mafic arc during deposition of the Mithakhari Group, whereas they were controlled by continental sources during deposition of the Andaman Flysch Group. The Hope Town Conglomerate unit of the Mithakhari Group was mainly derived from weathering and erosion of the subaerially exposed local ophiolite thrust sheets, whereas its Namunagarh unit contains significant detritus from volcanic arcs. The Andaman Flysch turbidites were deposited with a greater supply of sediments from first-cycle active continental margin sources probably located in the Tibetan and eastern Myanmar region and recycled quartzose sedimentary sources within the nascent Himalayas. The sediments supplied to both the Mithakhari and the Andaman Flysch Groups were characterized by varying values of CIA, PIA and W. These variable values were either due to non-steady state weathering conditions in the sources or the changing climatic conditions owing to the motion of Indian plate with reference to the equator. The uniformly high CIA and W values in the Andaman Flysch rocks can be related to high

Influence of Fault-Controlled Topography on Fluvio-Deltaic Sedimentary Systems in Eberswalde Crater, Mars

NASA Technical Reports Server (NTRS)

Rice, Melissa S.; Gupta, Sanjeev; Bell, James F., III; Warner, Nicholas H.

2011-01-01

Eberswalde crater was selected as a candidate landing site for the Mars Science Laboratory (MSL) mission based on the presence of a fan-shaped sedimentary deposit interpreted as a delta. We have identified and mapped five other candidate fluvio -deltaic systems in the crater, using images and digital terrain models (DTMs) derived from the Mars Reconnaissance Orbiter (MRO) High Resolution Imaging Science Experiment (HiRISE) and Context Camera (CTX). All of these systems consist of the same three stratigraphic units: (1) an upper layered unit, conformable with (2) a subpolygonally fractured unit, unconformably overlying (3) a pitted unit. We have also mapped a system of NNE-trending scarps interpreted as dip-slip faults that pre-date the fluvial -lacustrine deposits. The post-impact regional faulting may have generated the large-scale topography within the crater, which consists of a Western Basin, an Eastern Basin, and a central high. This topography subsequently provided depositional sinks for sediment entering the crater and controlled the geomorphic pattern of delta development.

Recent advances in cross-cultural measurement in psychiatric epidemiology: utilizing 'what matters most' to identify culture-specific aspects of stigma.

PubMed

Yang, Lawrence Hsin; Thornicroft, Graham; Alvarado, Ruben; Vega, Eduardo; Link, Bruce George

2014-04-01

While stigma measurement across cultures has assumed growing importance in psychiatric epidemiology, it is unknown to what extent concepts arising from culture have been incorporated. We utilize a formulation of culture-as the everyday interactions that 'matter most' to individuals within a cultural group-to identify culturally-specific stigma dynamics relevant to measurement. A systematic literature review from January 1990 to September 2012 was conducted using PsycINFO, Medline and Google Scholar to identify articles studying: (i) mental health stigma-related concepts; (ii) ≥ 1 non-Western European cultural group. From 5292 abstracts, 196 empirical articles were located. The vast majority of studies (77%) utilized adaptations of existing Western-developed stigma measures to new cultural groups. Extremely few studies (2.0%) featured quantitative stigma measures derived within a non-Western European cultural group. A sizeable amount (16.8%) of studies employed qualitative methods to identify culture-specific stigma processes. The 'what matters most' perspective identified cultural ideals of the everyday activities that comprise 'personhood' of 'preserving lineage' among specific Asian groups, 'fighting hard to overcome problems and taking advantage of immigration opportunities' among specific Latino-American groups, and 'establishing trust among religious institutions due to institutional discrimination' among African-American groups. These essential cultural interactions shaped culture-specific stigma manifestations. Mixed method studies (3.6%) corroborated these qualitative results. Quantitatively-derived, culturally-specific stigma measures were lacking. Further, the vast majority of qualitative studies on stigma were conducted without using stigma-specific frameworks. We propose the 'what matters most' approach to address this key issue in future research.

Seafloor environments within the Boston Harbor- Massachusetts Bay sedimentary system: A regional synthesis

USGS Publications Warehouse

Knebel, H.J.; Circe, R.C.

1995-01-01

Modern seafloor sedimentary environments within the glaciated, topographically complex Boston Harbor and Massachusetts Bay area have been interpreted and mapped from an extensive collection of sidescan sonar records and supplemental marine geologic data. Three categories of environments are present that reflect the dominant long-term processes of erosion or nondeposition, deposition, and sediment reworking. (1) Environments of erosion or nondeposition comprise exposures of bedrock, glacial drift, coarse lag deposits, and possibly coastal plain rocks that contain sediments (where present) ranging from boulder fields to gravelly sands and occur in areas of relatively strong currents. (2) Environments of deposition contain fine-grained sediments ranging from muddy sands to muds that have accumulated in areas of predominantly weak bottom currents. (3) Environments of sediment reworking contain patches with textures ranging from sandy gravels to muds that have been produced by a combination of erosion and deposition in areas with variable bottom currents. The distribution of sedimentary environments across the Boston Harbor-Massachusetts Bay area is extremely patchy. Locally, this patchiness is due either to modifications of bottom-current strength (caused by the irregular topography and differences in water depth) or to small-scale changes in the supply of fine-grained sediments. Regional patchiness, however, reflects differences in geologic and oceanographic conditions among the estuarine, inner shelf, and basinal parts of the sedimentary system. The estuarine part of the system (Boston Harbor) is a depositional trap for fine-grained sediments because it is protected from large waves, has generally weak and variable tidal currents, and receives a large supply of fine grained detritus from natural and anthropogenic sources. The inner shelf, on the other hand, is largely an area of erosion or nondeposition due to sediment removal and redistribution during past sea

Influences of Sedimentary Environments and Volcanic Sources on Diagenetic Alteration of Volcanic Tuffs in South China.

PubMed

Gong, Nina; Hong, Hanlie; Huff, Warren D; Fang, Qian; Bae, Christopher J; Wang, Chaowen; Yin, Ke; Chen, Shuling

2018-05-16

Permian-Triassic (P-Tr) altered volcanic ashes (tuffs) are widely distributed within the P-Tr boundary successions in South China. Volcanic altered ashes from terrestrial section-Chahe (CH) and marine section-Shangsi (SS) are selected to further understand the influence of sedimentary environments and volcanic sources on diagenetic alterarion on volcanic tuffs. The zircon 206 Pb/ 238 U ages of the corresponding beds between two sections are almost synchronous. Sedimentary environment of the altered tuffs was characterized by a low pH and did not experience a hydrothermal process. The dominant clay minerals of all the tuff beds are illite-smectite (I-S) minerals, with minor chlorite and kaolinite. I-S minerals of CH (R3) are more ordered than SS (R1), suggesting that CH also shows a higher diagenetic grade and more intensive chemical weathering. Besides, the nature of the volcanism of the tuff beds studied is derived from different magma sources. The clay mineral compositions of tuffs have little relation with the types of source volcanism and the depositional environments. Instead, the degree of the mixed-layer clay minerals and the REE distribution are mainly dependent upon the sedimentary environments. Thus, the mixed-layer clay minerals ratio and their geochemical index can be used as the paleoenvironmental indicator.

Strong motion from surface waves in deep sedimentary basins

USGS Publications Warehouse

Joyner, W.B.

2000-01-01

It is widely recognized that long-period surface waves generated by conversion of body waves at the boundaries of deep sedimentary basins make an important contribution to strong ground motion. The factors controlling the amplitude of such motion, however, are not widely understood. A study of pseudovelocity response spectra of strong-motion records from the Los Angeles Basin shows that late-arriving surface waves with group velocities of about 1 km/sec dominate the ground motion for periods of 3 sec and longer. The rate of amplitude decay for these waves is less than for the body waves and depends significantly on period, with smaller decay for longer periods. The amplitude can be modeled by the equation log y = f(M, RE) + c + bRB where y is the pseudovelocity response, f(M, RE) is an attenuation relation based on a general strong-motion data set, M is moment magnitude, RE is the distance from the source to the edge of the basin, RB is the distance from the edge of the basin to the recording site, and b and c are parameters fit to the data. The equation gives values larger by as much as a factor of 3 than given by the attenuation relationships based on general strong-motion data sets for the same source-site distance. It is clear that surface waves need to be taken into account in the design of long-period structures in deep sedimentary basins. The ground-motion levels specified by the earthquake provisions of current building codes, in California at least, accommodate the long-period ground motions from basin-edge-generated surface waves for periods of 5 sec and less and earthquakes with moment magnitudes of 7.5 or less located more than 20 km outside the basin. There may be problems at longer periods and for earthquakes located closer to the basin edge. The results of this study suggest that anelastic attenuation may need to be included in attempts to model long-period motion in deep sedimentary basins. To obtain better data on surface waves in the future

Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins.

PubMed

Le, Nguyen-Quoc-Khanh; Ho, Quang-Thai; Ou, Yu-Yen

2017-09-05

In several years, deep learning is a modern machine learning technique using in a variety of fields with state-of-the-art performance. Therefore, utilization of deep learning to enhance performance is also an important solution for current bioinformatics field. In this study, we try to use deep learning via convolutional neural networks and position specific scoring matrices to identify electron transport proteins, which is an important molecular function in transmembrane proteins. Our deep learning method can approach a precise model for identifying of electron transport proteins with achieved sensitivity of 80.3%, specificity of 94.4%, and accuracy of 92.3%, with MCC of 0.71 for independent dataset. The proposed technique can serve as a powerful tool for identifying electron transport proteins and can help biologists understand the function of the electron transport proteins. Moreover, this study provides a basis for further research that can enrich a field of applying deep learning in bioinformatics. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy.

PubMed

Coolen, Marco J L; Talbot, Helen M; Abbas, Ben A; Ward, Christopher; Schouten, Stefan; Volkman, John K; Damsté, Jaap S Sinninghe

2008-07-01

Bacteriohopanoids are widespread lipid biomarkers in the sedimentary record. Many aerobic and anaerobic bacteria are potential sources of these lipids which sometimes complicates the use of these biomarkers as proxies for ecological and environmental changes. Therefore, we applied preserved 16S ribosomal RNA genes to identify likely Holocene biological sources of bacteriohopanepolyols (BHPs) in the sulfidic sediments of the permanently stratified postglacial Ace Lake, Antarctica. A suite of intact BHPs were identified, which revealed a variety of structural forms whose composition differed through the sediment core reflecting changes in bacterial populations induced by large changes in lake salinity. Stable isotopic compositions of the hopanols formed from periodic acid-cleaved BHPs, showed that some were substantially depleted in (13)C, indicative of their methanotrophic origin. Using sensitive molecular tools, we found that Type I and II methanotrophic bacteria (respectively Methylomonas and Methylocystis) were unique to the oldest lacustrine sediments (> 9400 years BP), but quantification of fossil DNA revealed that the Type I methanotrophs, including methanotrophs related to methanotrophic gill symbionts of deep-sea cold-seep mussels, were the main precursors of the 35-amino BHPs (i.e. aminopentol, -tetrol and -triols). After isolation of the lake approximately 3000 years ago, one Type I methanotroph of the 'methanotrophic gill symbionts cluster' remained the most obvious source of aminotetrol and -triol. We, furthermore, identified a Synechococcus phylotype related to pelagic freshwater strains in the oldest lacustrine sediments as a putative source of 2-methylbacteriohopanetetrol (2-Me BHT). This combined application of advanced geochemical and paleogenomical tools further refined our knowledge about Holocene biogeochemical processes in Ace Lake.

Late Holocene sedimentary environments of south San Francisco Bay, California, illustrated in gravity cores

USGS Publications Warehouse

Woodrow, Donald L.; Fregoso, Theresa A.; Wong, Florence L.; Jaffe, Bruce E.

2014-01-01

Data are reported here from 51 gravity cores collected from the southern part of San Francisco Bay by the U.S. Geological Survey in 1990. The sedimentary record in the cores demonstrates a stable geographic distribution of facies and spans a few thousand years. Carbon-14 dating of the sediments suggests that sedimentation rates average about 1 mm/yr. The geometry of the bay floor and the character of the sediment deposited have remained about the same in the time spanned by the cores. However, the sedimentary record over periods of centuries or decades is likely to be much more variable. Sediments containing a few bivalve shells and bivalve or oyster coquinas are most often found west of the main channel and near the San Mateo Bridge. Elsewhere in the south bay, shells are rare except in the southernmost reaches where scattered gastropod shells are found.

TDEM survey in an area of seismicity induced by water wells in Paraná sedimentary basin, Northern São Paulo State, Brazil

NASA Astrophysics Data System (ADS)

Porsani, Jorge Luís; Almeida, Emerson Rodrigo; Bortolozo, Cassiano Antonio; Santos, Fernando Acácio Monteiro dos

2012-07-01

This article presents TDEM results from an area with recent induced shallow seismicity. The purpose was to do a geoelectrical mapping of sedimentary and fractured basaltic aquifers for better understanding of the hydrogeologic setting. The study area is in the Paraná basin where flood basalts are overlain by sedimentary units near the city of Bebedouro, northern São Paulo State, Brazil. 86 TDEM soundings were acquired in an area of 90 km2 in the Andes and Botafogo study areas. The soundings were chosen next to wells for calibration, and also along profiles crossing the seismically active areas. 1-D interpretation results showed the general geoelectrical stratigraphy of this part of the Paraná basin. The upper geoelectrical layer is the shallow sedimentary aquifer (Adamantina formation) with less than 80 m thickness. The second geoelectrical layer contains the upper basalts of the Serra Geral formation at about 60-80 m depths. A saturated fractured basalt zone between 100 and 300 m depths was identifiable on various TDEM soundings. This depth range corresponds to the range of hypocentral depths for more than 3000 micro-earthquakes in this area. The lower basalt layer was estimated to lie between 400 and 650 m depth. The deepest geoelectrical layer detected by various TDEM soundings corresponds to the Botucatu sandstone (Guarani aquifer). Results suggest that the high-discharge wells are located in the fractured zone in the middle basalt of the Serra Geral formation. There is a good correlation between seismically active areas, high discharge wells (> 190 m3/h), and fracture zones in the middle basalt. The results reinforce the hypothesis that the shallow seismic activity in the Bebedouro region is being triggered by high rates of groundwater withdrawal.

Sedimentary archives of the French Atlantic coast (inner Bay of Vilaine, south Brittany): Depositional history and late Holocene climatic and environmental signals

NASA Astrophysics Data System (ADS)

Sorrel, Philippe; Tessier, Bernadette; Demory, François; Baltzer, Agnès; Bouaouina, Firas; Proust, Jean-Noël; Menier, David; Traini, Camille

2010-06-01

The late Holocene is of particular interest to our understanding of the evolution of coastal sedimentary systems because this period encompasses warmer and cooler periods, and rising sea level in northern Europe. Based on an approach combining AMS 14C, sedimentological and rock magnetic analyses on sediment cores complemented with seismic data collected in the macrotidal Bay of Vilaine (south Brittany), we document the depositional history of the inner bay coeval to the mid- to late-Holocene transgression in south Brittany. Correlation between sedimentary archives revealed the main sedimentary infilling phases during the last 6000 years. Four units (U1-U4) are recognized in the coastal sediment wedge of the system, corresponding to the stepwise marine invasion of the bay. We show that (1) marine inundation, due to the steep morphology of the bedrock, is diachronous between distal and proximal records. A time lag of ˜1000 years is inferred over a distance of less than 5 km; (2) in the outer areas, the sedimentation has been condensed since 3000 years; (3) proximal estuarine archives offer the best record of sedimentary processes covering the last 2000 years, including the Medieval Warm Period (MWP). Correlations in proximal records in the Bay of Vilaine assess the connection between coastal sedimentary dynamics, climatic conditions and anthropogenic activities during the MWP. We match the preservation of clay deposits to increased river-borne suspended matter transported to the estuary probably as a result of accelerated land-use development (higher soil erosion) in the catchment area between ca. 880 and 1050 AD. Because the preservation of estuarine sedimentary successions is favoured when coastal wave sediment reworking is minimal, it is proposed that the prevailing climatic regime in south Brittany during the MWP likely resembled to that of the preferred negative phase of the North Atlantic Oscillation (NAO). Our data are fairly consistent with other late

Genesis and sedimentary record of blind channel and islands of the anabranching river: An evolution model

NASA Astrophysics Data System (ADS)

Leli, Isabel T.; Stevaux, José C.; Assine, Mário L.

2018-02-01

Blind channel (BC) is a fluvial feature formed by attachment of a lateral sand bar to an island or riverbank. It consists of a 10- to 20-m wide and hundreds to thousands meters long channel, parallel to the island or bank, closed at its upstream end by accretion to the island. It is an important feature in anabranching rivers that plays an important role in both the island formation and river ecology. This paper discusses the formation processes, functioning, evolution, and the sedimentary record of a blind channel, related landforms, and its context on island development in the Upper Paraná River. The evolution of this morphologic feature involves (1) formation of a lateral or attachment bar beside an island with the development of a channel in between; (2) vertical accretion of mud deposits during the flood and vegetal development on the bar; (3) the upstream channel closure that generates the blind channel; and (4) annexation of the blind channel to the island. A blind channel is semilotic to lentic, that is not totally integrated to the dynamics of the main active channel and that acts as a nursery for fingerlings and macrophytes. The sedimentary facies succession of BCs are relatively simple and characterized by cross-stratified sand covered by organic muddy sediments. Based on facies analysis of 12 cores, we identified a succession of environments that contribute to the formation of islands: channel bar, blind channel, pond, and swamp. Blind channel formation and its related bar-island attachment are relevant processes associated with the growing of large island evolution in some anabranching rivers.

Sedimentary processes of the Bagnold Dunes: Implications for the eolian rock record of Mars

NASA Astrophysics Data System (ADS)

Ewing, R. C.; Lapotre, M. G. A.; Lewis, K. W.; Day, M.; Stein, N.; Rubin, D. M.; Sullivan, R.; Banham, S.; Lamb, M. P.; Bridges, N. T.; Gupta, S.; Fischer, W. W.

2017-12-01

The Mars Science Laboratory rover Curiosity visited two active wind-blown sand dunes within Gale crater, Mars, which provided the first ground-based opportunity to compare Martian and terrestrial eolian dune sedimentary processes and study a modern analog for the Martian eolian rock record. Orbital and rover images of these dunes reveal terrestrial-like and uniquely Martian processes. The presence of grainfall, grainflow, and impact ripples resembled terrestrial dunes. Impact ripples were present on all dune slopes and had a size and shape similar to their terrestrial counterpart. Grainfall and grainflow occurred on dune and large-ripple lee slopes. Lee slopes were 29° where grainflows were present and 33° where grainfall was present. These slopes are interpreted as the dynamic and static angles of repose, respectively. Grain size measured on an undisturbed impact ripple ranges between 50 μm and 350 μm with an intermediate axis mean size of 113 μm (median: 103 μm). Dissimilar to dune eolian processes on Earth, large, meter-scale ripples were present on all dune slopes. Large ripples had nearly symmetric to strongly asymmetric topographic profiles and heights ranging between 12 cm and 28 cm. The composite observations of the modern sedimentary processes highlight that the Martian eolian rock record is likely different from its terrestrial counterpart because of the large ripples, which are expected to engender a unique scale of cross stratification. More broadly, however, in the Bagnold Dune Field as on Earth, dune-field pattern dynamics and basin-scale boundary conditions will dictate the style and distribution of sedimentary processes.

Geochemistry of approximately 1.9 Ga sedimentary rocks from northeastern Labrador, Canada

NASA Technical Reports Server (NTRS)

Hayashi, K. I.; Fujisawa, H.; Holland, H. D.; Ohmoto, H.

1997-01-01

Fifty-eight rock chips from fifteen samples of sedimentary rocks from the Ramah Group (approximately 1.9 Ga) in northeastern Labrador, Canada, were analyzed for major and minor elements, including C and S, to elucidate weathering processes on the Earth's surface about 1.9 Ga ago. The samples come from the Rowsell Harbour, Reddick Bight, and Nullataktok Formations. Two rock series, graywackes-gray shales of the Rowsell Harbour, Reddick Bight and Nullataktok Formations, and black shales of the Nullataktok Formation, are distinguishable on the basis of lithology, mineralogy, and major and trace element chemistry. The black shales show lower concentrations than the graywackes-gray shales in TiO2 (0.3-0.7 wt% vs. 0.7-1.8 wt%), Al2O3 (9.5-20.1 wt% vs. 13.0-25.0 wt%), and sigma Fe (<1 wt% vs. 3.8-13.9 wt% as FeO). Contents of Zr, Th, U, Nb, Ce, Y, Rb, Y, Co, and Ni are also lower in the black shales. The source rocks for the Ramah Group sediments were probably Archean gneisses with compositions similar to those in Labrador and western Greenland. The major element chemistry of source rocks for the Ramah Group sedimentary rocks was estimated from the Al2O3/TiO2 ratios of the sedimentary rocks and the relationship between the major element contents (e.g., SiO2 wt%) and Al2O3/TiO2 ratios of the Archean gneisses. This approach is justified, because the Al/Ti ratios of shales generally retain their source rock values; however, the Zr/Al, Zr/Ti, and Cr/Ni ratios fractionate during the transport of sediments. The measured SiO2 contents of shales in the Ramah Group are generally higher than the estimated SiO2 contents of source rocks by approximately 5 wt%. This correction may also have to be applied when estimating average crustal compositions from shales. Two provenances were recognized for the Ramah Group sediments. Provenance I was comprised mostly of rocks of bimodal compositions, one with SiO2 contents approximately 45 wt% and the other approximately 65 wt%, and was the

A Bottom-Up Proteomic Approach to Identify Substrate Specificity of Outer-Membrane Protease OmpT.

PubMed

Wood, Sarah E; Sinsinbar, Gaurav; Gudlur, Sushanth; Nallani, Madhavan; Huang, Che-Fan; Liedberg, Bo; Mrksich, Milan

2017-12-22

Identifying peptide substrates that are efficiently cleaved by proteases gives insights into substrate recognition and specificity, guides development of inhibitors, and improves assay sensitivity. Peptide arrays and SAMDI mass spectrometry were used to identify a tetrapeptide substrate exhibiting high activity for the bacterial outer-membrane protease (OmpT). Analysis of protease activity for the preferred residues at the cleavage site (P1, P1') and nearest-neighbor positions (P2, P2') and their positional interdependence revealed FRRV as the optimal peptide with the highest OmpT activity. Substituting FRRV into a fragment of LL37, a natural substrate of OmpT, led to a greater than 400-fold improvement in OmpT catalytic efficiency, with a k cat /K m value of 6.1×10 6  L mol -1  s -1 . Wild-type and mutant OmpT displayed significant differences in their substrate specificities, demonstrating that even modest mutants may not be suitable substitutes for the native enzyme. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Seismic Stratigraphy of the Mariana Forearc Sedimentary Basin

NASA Astrophysics Data System (ADS)

Chapp, E.; Taylor, B.; Oakley, A.; Moore, G.

2005-12-01

A grid of seismic reflection profiles across the Mariana forearc between 14N-18N reveals a sedimentary basin between the Oligocene-Miocene frontal arc and the Eocene outer forearc highs. We identify and correlate several seismic stratigraphic units and use them to constrain the local and regional tectonics, which vary significantly from north to south. Four major sediment packages are distinguished in the southern forearc basin. The oldest unit, U-4, is conformable to arcward-tilted, rotated fault blocks formed during early extension, possibly associated with early Oligocene rifting prior to Parece Vela Basin spreading. Onlap relationships between the oldest sedimentary units indicate that deposition occurred before, during and after block rotation. On one profile, the U-4 sequence is deformed above a blind thrust fault in an otherwise extensional environment. Sediments that comprise the third unit, U-3, thin trenchward and onlap onto U-4. U-2 sediments onlap both sides of the basin and are characterized by nearly uniform thicknesses across the southern section. They currently dip trenchward, but are bypassed and onlapped arcward by thin recent deposits, U-1, on the three southern lines, suggesting recent relative subsidence of the outer forearc. The onset of this subsidence (during deposition of the upper strata of U-2) may have generated slope instability that triggered a large submarine slump off the frontal arc high into the forearc basin ENE of Saipan. The seismic stratigraphic units reveal both pre- and post-slump depositional boundaries including a possible post-slump debris apron around the perimeter of the toe thrust. The central region (near 16N), absent of the large rotated basement fault blocks found in the south, is characterized by high-angle normal faults that offset the seafloor by as much as 200 m. The upper section of U-4 is visible in isolated sections, but the coherency of the oldest layers is lost. Because a clear basement reflection is not

Determination of total sulfur content of sedimentary rocks by a combustion method

USGS Publications Warehouse

Coller, M.E.; Leininger, R.K.

1955-01-01

Total sulfur has been determined in common sedimentary rocks by a combustion method. Sulfur contents range from 0.001 to 5.0%. Experiments show that the combustion method can be used in analyzing sedimentary rocks in which sulfur is present as sulfide, sulfate, or both. Pulverized samples from 0.100 to 0.500 gram in weight are used in this method. Each sample is placed in a No. 6 Leco combustion boat and covered with two fluxes: 0.50 gram of standard ingot iron and approximately 1.0 gram of 30-mesh granular tin. The boat with sample then is placed in the combustion tube of a Burrell Unit Package Model T29A tube furnace which is controlled at a temperature of 1310?? to 1320?? C. After the sample has been heated for 1 minute, oxygen is admitted at a rate of about 1 liter per minute. The sulfur dioxide formed is absorbed in a starch solution and is titrated with standard potassium iodate in a Leco sulfur determinator. Thirteen values obtained for National Bureau of Standards standard sample 1a, argillaceous limestone, range from 0.273 to 0.276% sulfur (certificate value 0.27% by calculation).

Determination of petrophysical properties of sedimentary rocks by optical methods

NASA Astrophysics Data System (ADS)

Korte, D.; Kaukler, D.; Fanetti, M.; Cabrera, H.; Daubront, E.; Franko, M.

2017-04-01

Petrophysical properties of rocks (thermal diffusivity and conductivity, porosity and density) as well as the correlation between them are of great importance for many geoscientific applications. The porosity of the reservoir rocks and their permeability are the most fundamental physical properties with respect to the storage and transmission of fluids, mainly oil characterization. Accurate knowledge of these parameters for any hydrocarbon reservoir is required for efficient development, management, and prediction of future performance of the oilfield. Thus, the porosity and permeability, as well as the chemical composition must be quantified as precisely as possible. This should be done along with the thermal properties, density, conductivity, diffusivity and effusivity that are intimately related with them. For this reason, photothermal Beam Deflection Spectrometry (BDS) technique for determination of materials' thermal properties together with other methods such as Energy Dispersive X-ray Scanning Electron Microscopy (SEM-EDX) for determining the chemical composition and sample structure, as well as optical microscopy to determine the particles size, were applied for characterization of sedimentary rocks. The rocks were obtained from the Andes south flank in the Venezuela's western basin. The validation of BDS applicability for determination of petrophysical properties of three sedimentary rocks of different texture and composition (all from Late Cretaceous associated with the Luna, Capacho and Colón-Mito Juan geological formations) was performed. The rocks' thermal properties were correlated to the microstructures and chemical composition of the examined samples.

Leaching of boron, arsenic and selenium from sedimentary rocks: I. Effects of contact time, mixing speed and liquid-to-solid ratio.

PubMed

Tabelin, Carlito Baltazar; Hashimoto, Ayaka; Igarashi, Toshifumi; Yoneda, Tetsuro

2014-02-15

Sedimentary rocks of marine origin excavated in tunnel projects were recently identified as potentially hazardous because they could release significant amounts of toxic trace elements when exposed to the environment. This study investigated the leaching characteristics of B, As, Se and the major coexisting ions under various conditions to identify the factors and processes controlling their evolution in the leachate. In addition, we evaluated whether the parameters of the currently used leachability test for excavated rocks were adequate. Although the leachabilities of B, As and Se similarly increased at longer contact times, only those of B and As were influenced by the mixing speed and/or liquid-to-solid ratio (L/S). The majority of trace elements dissolved in the leachate originated from the dissolution of soluble salts formed from seawater of the Cretaceous trapped during the formation of the sedimentary rocks. Moreover, the alkaline pH of the leachates could be attributed to the simultaneous dissolutions at varying degrees of the mineral components of the rocks as well as the precipitation of clay minerals. In the leaching test of excavated rocks for regulatory purposes, the best values of contact time and mixing speed should represent conditions of the highest trace element extractabilities, which in this study were found at longer contact times (>48 h) and the fastest mixing speed (200 rpm). The most appropriate L/S for the leaching test is 10 because it was around this L/S that the extractabilities and leaching concentrations of the trace elements were simultaneously observed at their highest values. Copyright © 2013 Elsevier B.V. All rights reserved.

Sedimentary petrography of the Early Proterozoic Pretoria Group, Transvaal Sequence, South Africa: implications for tectonic setting

NASA Astrophysics Data System (ADS)

Schreiber, U. M.; Eriksson, P. G.; van der Neut, M.; Snyman, C. P.

1992-11-01

Sandstone petrography, geochemistry and petrotectonic assemblages of the predominantly clastic sedimentary rocks of the Early Proterozoic Pretoria Group, Transvaal Sequence, point to relatively stable cratonic conditions at the beginning of sedimentation, interrupted by minor rifting events. Basement uplift and a second period of rifting occurred towards the end of Pretoria Group deposition, which was followed by the intrusion of mafic sill swarms and the emplacement of the Bushveld Complex in the Kaapvaal Craton at about 2050 Ma, the latter indicating increased extensional tectonism, and incipient continental rifting. An overall intracratonic lacustrine tectonic setting for the Pretoria Group is supported by periods of subaerial volcanic activity and palaeosol formation, rapid sedimentary facies changes, significant arkosic sandstones, the presence of non-glacial varves and a highly variable mudrock geochemistry.

Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China.

PubMed

Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

2015-01-01

A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a "small plain, big front" character.

Formation Conditions and Sedimentary Characteristics of a Triassic Shallow Water Braided Delta in the Yanchang Formation, Southwest Ordos Basin, China

PubMed Central

Liu, Ziliang; Shen, Fang; Zhu, Xiaomin; Li, Fengjie; Tan, Mengqi

2015-01-01

A large, shallow braided river delta sedimentary system developed in the Yanchang Formation during the Triassic in the southwest of the Ordos basin. In this braided delta system, abundant oil and gas resources have been observed, and the area is a hotspot for oil and gas resource exploration. Through extensive field work on outcrops and cores and analyses of geophysical data, it was determined that developments in the Late Triassic produced favorable geological conditions for the development of shallow water braided river deltas. Such conditions included a large basin, flat terrain, and wide and shallow water areas; wet and dry cyclical climate changes; ancient water turbulence; dramatic depth cycle changes; ancient uplift development; strong weathering of parent rock; and abundant supply. The shallow water braided river delta showed grain sediment granularity, plastic debris, and sediment with mature composition and structure that reflected the strong hydrodynamic environment of large tabular cross-bedding, wedge cross-bedding, and multiple positive rhythms superimposed to form a thick sand body layer. The branch river bifurcation developed underwater, and the thickness of the sand body increased further, indicating that the slope was slow and located in shallow water. The seismic responses of the braided river delta reflected strong shallow water performance, indicated by a progradation seismic reflection phase axis that was relatively flat; in addition, the seismic reflection amplitude was strong and continuous with a low angle and extended over considerable distances (up to 50 km). The sedimentary center was close to the provenance, the width of the river was large, and a shallow sedimentary structure and a sedimentary rhythm were developed. The development of the delta was primarily controlled by tectonic activity and changes in the lake level; as a result, the river delta sedimentary system eventually presented a “small plain, big front” character. PMID

The Lusi eruption and implications for understanding fossil piercement structures in sedimentary basins

NASA Astrophysics Data System (ADS)

Svensen, Henrik; Mazzini, Adriano; Planke, Sverre; Hadi, Soffian

2016-04-01

The Lusi eruption started in northeast Java, Indonesia, on May 29th 2006, and it has been erupting rocks, mud, water, and gas ever since. We have been doing field work and research on Lusi ever since the eruption commenced. This work was initially motivated from studying the initiation of a mud volcano. However, the longevity of the eruption has made it possible to describe and monitor the lifespan of this unique piercement structure. . One of the first-order questions regarding the eruption is how it should be classified and if there are any other modern or fossil analogues that can place Lusi in a relevant geological context. During the initial stages of eruption, Lusi was classified as a mud volcano, but following geochemical studies the eruption did not show the typical CH4-dominated gas composition of other mud volcanoes and the temperature was also too high. Moreover, mud volcano eruptions normally last a few days, but Lusi never stopped during the past decade. In particular, the crater fluid geochemistry suggests a connection to the neighboring volcanic complex. Lusi represent a sedimentary hosted hydrothermal system. This opens up new possibilities for understanding fossil hydrothermal systems in sedimentary basins, such as hydrothermal vent complexes and breccia-pipes found in sedimentary basins affected by the formation of Large igneous provinces. We will present examples from the Karoo Basin (South Africa) and the Vøring Basin (offshore Norway) and discuss how Lusi can be used to refine existing formation models. Finally, by comparing Lusi to fossil hydrothermal systems we may get insight into the processes operating at depth where the Lusi system interacts with the igneous rocks of the neighbouring volcanic arc.

Identifying functional cancer-specific miRNA-mRNA interactions in testicular germ cell tumor.

PubMed

Sedaghat, Nafiseh; Fathy, Mahmood; Modarressi, Mohammad Hossein; Shojaie, Ali

2016-09-07

Testicular cancer is the most common cancer in men aged between 15 and 35 and more than 90% of testicular neoplasms are originated at germ cells. Recent research has shown the impact of microRNAs (miRNAs) in different types of cancer, including testicular germ cell tumor (TGCT). MicroRNAs are small non-coding RNAs which affect the development and progression of cancer cells by binding to mRNAs and regulating their expressions. The identification of functional miRNA-mRNA interactions in cancers, i.e. those that alter the expression of genes in cancer cells, can help delineate post-regulatory mechanisms and may lead to new treatments to control the progression of cancer. A number of sequence-based methods have been developed to predict miRNA-mRNA interactions based on the complementarity of sequences. While necessary, sequence complementarity is, however, not sufficient for presence of functional interactions. Alternative methods have thus been developed to refine the sequence-based interactions using concurrent expression profiles of miRNAs and mRNAs. This study aims to find functional cancer-specific miRNA-mRNA interactions in TGCT. To this end, the sequence-based predicted interactions are first refined using an ensemble learning method, based on two well-known methods of learning miRNA-mRNA interactions, namely, TaLasso and GenMiR++. Additional functional analyses were then used to identify a subset of interactions to be most likely functional and specific to TGCT. The final list of 13 miRNA-mRNA interactions can be potential targets for identifying TGCT-specific interactions and future laboratory experiments to develop new therapies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Seismic scattering attribute for sedimentary classification of nearshore marine quarries for a major beach nourishment project: Case study of Adriatic coastline, Regione Abruzzo (Italy)

NASA Astrophysics Data System (ADS)

Orlando, Luciana; Contini, Paolo; De Girolamo, Paolo

2017-06-01

Of fundamental importance for any major beach nourishment project using marine quarries is a correct sedimentary classification. The main purpose of such a classification is to identify sand with the appropriate features for beach nourishment. This task is more onerous when quarry sediments are heterogeneous and mixed with silt. This is typical of nearshore marine quarries. The presence of excess silt compromises the use of marine quarries because of the water turbidity that may be induced in the nourished beaches, especially when the beaches are protected by defense structures. Here we discuss the use of scattering amplitude of seismic data, acquired with a pinger source (2-10 kHz), to detect and classify the unconsolidated sediment of a marine quarry. A robust correlation was found between this seismic attribute and the silt content in the sediment. The scattering amplitude was numerically calculated from the seismic data and used to map slices of silt content at different depths. The results have been validated with sedimentary analysis of vibra- and rotary cores, and by the dredged material used for the beach nourishment. The marine quarry produced about 1.200.000 m3 of sand used to nourish eight different beach sites along the Adriatic coasts of the Regione Abruzzo (Italy). The large-scale sedimentary assessment of the area was based on seismic boomer data and the evaluation of the volume of dredged sediments on multibeam data surveyed before and after the exploitation of the quarry. The study shows that this approach is effective in sites with high lateral and vertical variations in the percentage of sand in the sediments.

Walled Sedimentary Basins of China: Perpetrators or Victims of Plateau Growth?

NASA Astrophysics Data System (ADS)

Carroll, A. R.; Graham, S. A.; Smith, M. E.

2004-12-01

Western China and adjacent areas of central Asia are characterized by low relief, internally drained sedimentary basins that are divided by actively uplifting mountain ranges. The margins of these basins often show evidence for extensive contractional deformation, yet their interiors are surprisingly stable. Basins such as the Tarim and Junggar also exhibit long and apparently continuous histories of closed drainage in the same approximate location (over 250 my in the case of Junggar). In contrast to traditional foreland basins, these basins are not uniquely associated with a specific thrust belt, nor do they show evidence for underlying decollements. We therefore propose the new term "walled basin", in recognition of the essential role of peripheral orogenic walls in creating and maintaining closed drainage and impounding sediments. Walled basins in Asia currently are restricted to areas that receive less than 40 cm/yr precipitation, suggesting that aridity plays a role in preventing fluvial breach of the basin walls (cf., Sobel et al., 2003). Entrapment of sediment within the closed Qaidam basin in the northeast Tibetan plateau has been implicated as a potential mechanism of plateau growth, based on the observations that the basin retains mass within the orogen and creates level topography. However, we propose that the Qaidam instead represents a walled basin that has been elevated due to underplating of the plateau, and is fated to eventual destruction as deformation continues. Several lines of reasoning support this conclusion. First, DEM analysis shows that modern drainage divides for the Qaidam and other walled basins never rise more than 1-2 km above the basin floors, limiting the amount of possible topgraphic infill. Second, the Tarim and Junggar basins presently remain well below 2000 m and probably have never been higher, despite receiving large influxes of detritus from adjacent ranges. Third, the Qaidam basin, like the Tarim and Junggar basins, has an

Identifying children with specific reading disabilities from listening and reading discrepancy scores.

PubMed

Spring, C; French, L

1990-01-01

A method of identifying children with specific reading disabilities by identifying discrepancies between their reading and listening comprehension scores was validated with disabled and nondisabled readers in Grades 4, 5, and 6. The method is based on a modification of the reading comprehension subtest of the Peabody Individual Achievement Test (Dunn & Markwardt, 1970). In this modification, even-numbered sentences are read by subjects, and odd-numbered sentences are read by the test administrator as subjects listen. The features of this test that reduce demands on working memory, thereby making it suitable for the detection of a discrepancy between reading and listening comprehension in readers with disabilities, are discussed. A significant group-by-modality interaction was obtained. Children with reading disabilities scored significantly lower on reading than on listening comprehension, while nondisabled readers scored slightly higher, but not significantly so, on reading than on listening comprehension. The appropriateness of this method as a substitute for the traditional method, which is based on the detection of a discrepancy between intelligence and reading and which has recently been proscribed in certain school districts, is discussed. Issues concerning the listening comprehension skills of disabled readers are also discussed.

Male specific genes from dioecious white campion identified by fluorescent differential display.

PubMed

Scutt, Charles P; Jenkins, Tom; Furuya, Masaki; Gilmartin, Philip M

2002-05-01

Fluorescent differential display (FDD) has been used to screen for cDNAs that are differentially up-regulated in male flowers of the dioecious plant Silene latifolia in which an X/Y chromosome system of sex determination operates. To adapt FDD to the cloning of large numbers of differential cDNAs, a novel method of confirming the differential expression of these has been devised. FDD gels were Southern electro-blotted and probed with mixtures of individual cDNA clones derived from different FDD product ligation reactions. These Southern blots were then stripped and re-probed with further mixtures of individual cloned FDD products to identify the maximum number of recombinant clones carrying the true differential amplification products. Of 135 differential bands identified by FDD, 56 differential amplification products were confirmed; these represent 23 unique differentially expressed genes as determined by virtual Northern analysis and two genes expressed at or below the level of detection by virtual Northern analysis. These two low expressed genes show bands of hybridization on genomic Southern blots that are specific to male plants, indicating that they are derived from, or closely related to, Y chromosome genes.

Transient hydrodynamics within intercratonic sedimentary basins during glacial cycles

NASA Astrophysics Data System (ADS)

Bense, V. F.; Person, M. A.

2008-12-01

The hydrodynamic consequences of a glaciation/deglaciation cycle within an intercratonic sedimentary basin on subsurface transport processes is assessed using numerical models. In our analysis we consider the effects of mechanical ice sheet loading, permafrost formation, variable density fluids, and lithospheric flexure on solute/isotope transport, groundwater residence times, and transient hydraulic head distributions. The simulations are intended to apply, in a generic sense, to intercratonic sedimentary basins that would have been near the southern limit of the Laurentide Ice Sheet during the last glacial maximum (˜20 ka B.P.), such as the Williston, Michigan, and Illinois basins. We show that in such basins fluid flow and recharge rates are strongly elevated during glaciation as compared to nonglacial periods. Furthermore, our results illustrate that steady state hydrodynamic conditions in these basins are probably never reached during a 32.5 ka cycle of advance and retreat of a wet-based ice sheet. Present-day hydrogeological conditions across formerly glaciated areas are likely to still reflect the impact of the last glaciation and associated processes that ended locally more than 10 ka B.P. Our results reveal characteristic spatial patterns of underpressure and overpressure that occur in aquitards and aquifers, respectively, as a result of recent glaciation. The calculated emplacement of low salinity, isotopically light glacial meltwater along basin margins is roughly consistent with observations from formerly glaciated basins in North America. The modeling presented in this study will help to improve the management of groundwater resources in formerly glaciated basins as well as to evaluate the viability on geological timescales of nuclear waste repositories located at high latitudes.

PUMa - modelling the groundwater flow in Baltic Sedimentary Basin

NASA Astrophysics Data System (ADS)

Kalvane, G.; Marnica, A.; Bethers, U.

2012-04-01

In 2009-2012 at University of Latvia and Latvia University of Agriculture project "Establishment of interdisciplinary scientist group and modelling system for groundwater research" is implemented financed by the European Social Fund. The aim of the project is to develop groundwater research in Latvia by establishing interdisciplinary research group and modelling system covering groundwater flow in the Baltic Sedimentary Basin. Researchers from fields like geology, chemistry, mathematical modelling, physics and environmental engineering are involved in the project. The modelling system is used as a platform for addressing scientific problems such as: (1) large-scale groundwater flow in Baltic Sedimentary Basin and impact of human activities on it; (2) the evolution of groundwater flow since the last glaciation and subglacial groundwater recharge; (3) the effects of climate changes on shallow groundwater and interaction of hydrographical network and groundwater; (4) new programming approaches for groundwater modelling. Within the frame of the project most accessible geological information such as description of geological wells, geological maps and results of seismic profiling in Latvia as well as Estonia and Lithuania are collected and integrated into modelling system. For example data form more then 40 thousands wells are directly used to automatically generate the geological structure of the model. Additionally a groundwater sampling campaign is undertaken. Contents of CFC, stabile isotopes of O and H and radiocarbon are the most significant parameters of groundwater that are established in unprecedented scale for Latvia. The most important modelling results will be published in web as a data set. Project number: 2009/0212/1DP/1.1.1.2.0/09/APIA/VIAA/060. Project web-site: www.puma.lu.lv

The amplitude effects of sedimentary basins on through-passing surface waves

NASA Astrophysics Data System (ADS)

Feng, L.; Ritzwoller, M. H.; Pasyanos, M.

2016-12-01

Understanding the effect of sedimentary basins on through-passing surface waves is essential in many aspects of seismology, including the estimation of the magnitude of natural and anthropogenic events, the study of the attenuation properties of Earth's interior, and the analysis of ground motion as part of seismic hazard assessment. In particular, knowledge of the physical causes of amplitude variations is important in the application of the Ms:mb discriminant of nuclear monitoring. Our work addresses two principal questions, both in the period range between 10 s and 20 s. The first question is: In what respects can surface wave propagation through 3D structures be simulated as 2D membrane waves? This question is motivated by our belief that surface wave amplitude effects down-stream from sedimentary basins result predominantly from elastic focusing and defocusing, which we understand as analogous to the effect of a lens. To the extent that this understanding is correct, 2D membrane waves will approximately capture the amplitude effects of focusing and defocusing. We address this question by applying the 3D simulation code SW4 (a node-based finite-difference code for 3D seismic wave simulation) and the 2D code SPECFEM2D (a spectral element code for 2D seismic wave simulation). Our results show that for surface waves propagating downstream from 3D sedimentary basins, amplitude effects are mostly caused by elastic focusing and defocusing which is modeled accurately as a 2D effect. However, if the epicentral distance is small, higher modes may contaminate the fundamental mode, which may result in large errors in the 2D membrane wave approximation. The second question is: Are observations of amplitude variations across East Asia following North Korean nuclear tests consistent with simulations of amplitude variations caused by elastic focusing/defocusing through a crustal reference model of China (Shen et al., A seismic reference model for the crust and uppermost

Global perspectives on oxidative weathering of organic carbon in sedimentary rocks

NASA Astrophysics Data System (ADS)

Dellinger, M.; Hilton, R. G.; West, A. J.; Horan, K.; Gaillardet, J.

2016-12-01

Over geological timescales, the oxidation of organic carbon in sedimentary rocks is major source of carbon dioxide (CO2) to the atmosphere. The global magnitude of this flux remains poorly constrained, but it is likely to be between 40-100 x 1012 g C yr-1, similar to the CO2 emissions from volcanism. The rates of CO2 emission ultimately set the rate of silicate weathering by carbonic acid and new organic carbon burial, which act together to stabilise the climate system. To constrain how the geological carbon cycle operates and modifies Earth's climate over millions of years, we must better understand the controls on the oxidation of sedimentary rock-derived organic carbon (`petrogenic' OC, OCpetro). Here we examine new and published constraints on OCpetro oxidation flux, which come from indirect measurements (e.g. trace element proxies such as rhenium) and direct measurements (e.g. CO2 trapping and 14C). Existing datasets track the gaseous and dissolved products of weathering as well as the solid residues over a range of spatial scales, from soil profiles to large river catchments. Although the datasets are still sparse, they indicate that physical denudation plays a major role in setting OCpetro oxidation flux. These measurements are interrogated in the framework of a catchment-scale numerical model of OCpetro oxidation. By harnessing approaches developed to examine and quantify acid-hydrolysis reactions (i.e. silicate mineral weathering by carbonic acid) the model considers realistic geochemical processes and the links between erosion and weathering. Key parameters emerge, such as the `weathering thickness' which describes a depth to which oxidative waters penetrate. The reaction kinetics of OCpetro remain poorly constrained, but nevertheless, the model predicts that the kinetic limitation of OCpetro oxidation is not reached until physical erosion rates exceed 2 mm yr-1, which is much higher than for CO2 consumption by silicate weathering. These findings mirror

Widespread loess-like deposit in the Martian northern lowlands identifies Middle Amazonian climate change

USGS Publications Warehouse

Skinner, James A.; Tanaka, Kenneth L.; Platz, Thomas

2014-01-01

Consistently mappable units critical to distinguishing the style and interplay of geologic processes through time are sparse in the Martian lowlands. This study identifies a previously unmapped Middle Amazonian (ca. 1 Ga) unit (Middle Amazonian lowland unit, mAl) that postdates the Late Hesperian and Early Amazonian lowland plains by >2 b.y. The unit is regionally defined by subtle marginal scarps and slopes, has a mean thickness of 32 m, and extends >3.1 × 106 km2 between lat 35°N and 80°N. Pedestal-type craterforms and nested, arcuate ridges (thumbprint terrain) tend to occur adjacent to unit mAl outcrops, suggesting that current outcrops are vestiges of a more extensive deposit that previously covered ∼16 × 106 km2. Exposed layers, surface pits, and the draping of subjacent landforms allude to a sedimentary origin, perhaps as a loess-like deposit emplaced rhythmically through atmospheric fallout. We propose that unit mAl accumulated coevally with, and at the expense of, the erosion of the north polar basal units, identifying a major episode of Middle Amazonian climate-driven sedimentation in the lowlands. This work links ancient sedimentary processes to climate change that occurred well before those implied by current orbital and spin axis models.

Sensitivity and specificity of administrative mortality data for identifying prescription opioid–related deaths

PubMed Central

Gladstone, Emilie; Smolina, Kate; Morgan, Steven G.; Fernandes, Kimberly A.; Martins, Diana; Gomes, Tara

2016-01-01

Background: Comprehensive systems for surveilling prescription opioid–related harms provide clear evidence that deaths from prescription opioids have increased dramatically in the United States. However, these harms are not systematically monitored in Canada. In light of a growing public health crisis, accessible, nationwide data sources to examine prescription opioid–related harms in Canada are needed. We sought to examine the performance of 5 algorithms to identify prescription opioid–related deaths from vital statistics data against data abstracted from the Office of the Chief Coroner of Ontario as a gold standard. Methods: We identified all prescription opioid–related deaths from Ontario coroners’ data that occurred between Jan. 31, 2003, and Dec. 31, 2010. We then used 5 different algorithms to identify prescription opioid–related deaths from vital statistics death data in 2010. We selected the algorithm with the highest sensitivity and a positive predictive value of more than 80% as the optimal algorithm for identifying prescription opioid–related deaths. Results: Four of the 5 algorithms had positive predictive values of more than 80%. The algorithm with the highest sensitivity (75%) in 2010 improved slightly in its predictive performance from 2003 to 2010. Interpretation: In the absence of specific systems for monitoring prescription opioid–related deaths in Canada, readily available national vital statistics data can be used to study prescription opioid–related mortality with considerable accuracy. Despite some limitations, these data may facilitate the implementation of national surveillance and monitoring strategies. PMID:26622006

Sensitivity and specificity of administrative mortality data for identifying prescription opioid-related deaths.

PubMed

Gladstone, Emilie; Smolina, Kate; Morgan, Steven G; Fernandes, Kimberly A; Martins, Diana; Gomes, Tara

2016-03-01

Comprehensive systems for surveilling prescription opioid-related harms provide clear evidence that deaths from prescription opioids have increased dramatically in the United States. However, these harms are not systematically monitored in Canada. In light of a growing public health crisis, accessible, nationwide data sources to examine prescription opioid-related harms in Canada are needed. We sought to examine the performance of 5 algorithms to identify prescription opioid-related deaths from vital statistics data against data abstracted from the Office of the Chief Coroner of Ontario as a gold standard. We identified all prescription opioid-related deaths from Ontario coroners' data that occurred between Jan. 31, 2003, and Dec. 31, 2010. We then used 5 different algorithms to identify prescription opioid-related deaths from vital statistics death data in 2010. We selected the algorithm with the highest sensitivity and a positive predictive value of more than 80% as the optimal algorithm for identifying prescription opioid-related deaths. Four of the 5 algorithms had positive predictive values of more than 80%. The algorithm with the highest sensitivity (75%) in 2010 improved slightly in its predictive performance from 2003 to 2010. In the absence of specific systems for monitoring prescription opioid-related deaths in Canada, readily available national vital statistics data can be used to study prescription opioid-related mortality with considerable accuracy. Despite some limitations, these data may facilitate the implementation of national surveillance and monitoring strategies. © 2016 Canadian Medical Association or its licensors.

Towards the development of a consensual chronostratigraphy for Arctic Ocean sedimentary records

NASA Astrophysics Data System (ADS)

Hillaire-Marcel, Claude; de Vernal, Anne; Polyak, Leonid; Stein, Rüdiger; Maccali, Jenny; Jacobel, Allison; Cuny, Kristan

2017-04-01

Deciphering Arctic paleoceanograpy and paleoclimate, and linking it to global marine and atmospheric records is much needed for comprehending the Earth's climate history. However, this task is hampered by multiple problems with dating Arctic Ocean sedimentary records related notably to low and highly variable sedimentation rates, scarce and discontinuous biogenic proxies due to low productivity and/or poor preservation, and difficulties correlating regional records to global stacks (e.g., paleomagnetic). Despite recent advances in developing an Arctic Ocean sedimentary stratigraphy, and attempts at setting radiometric benchmark ages of respectively 300 and 150 ka, based on the final decay of 230Th and 231Pa excesses (Thxs, Paxs) (Not et al., 2008), consensual age models are still missing, preventing reliable integration of Arctic records in a global paleoclimatic scheme. Here, we intend to illustrate these issues by comparing consistent Thxs-Paxs chronostratigraphic records from the Mendeleev-Alpha and Lomonosov ridges with the currently used age model based on climatostratigraphic interpretation of sedimentary records (e.g., Polyak et al., 2009; Stein et al., 2010). Data used were collected from the 2005 HOTRAX core MC-11 (northern Mendeleev Ridge) and the 2014 Polarstern core PS87-30 (Lomonosov Ridge). Total collapse depths of Thxs and Paxs are observed by a factor of 3 deeper in core PS87-30 vs core MC-11, indicating average sedimentation rates 3 times higher at the Lomonosov Ridge site. Litho-biostratigraphic markers, such as foraminiferal peaks and manganese-enriched layers, show a similar pattern, with their occurrence 3 times deeper in core PS87-30 than in core MC-11. These very consistent downcore features highlight a gaping difference between the benchmark ages assigned to the total decay of Paxs and Thxs and the current age model based on climatostratigraphic approach involving significantly higher sedimentation rates. This discrepancy begs for its in

Processing of thermal parameters for the assessment of geothermal potential of sedimentary basins

NASA Astrophysics Data System (ADS)

Pasquale, V.; Chiozzi, P.; Gola, G.; Verdoya, M.

2009-04-01

The growing interest on renewable energy sources is stimulating new efforts aimed at the assessment of geothermal potential in several countries, and new developments are expected in the near future. In this framework, a basic step forward is to focus geothermal investigations on geological environments which so far have been relatively neglected. Some intracontinental sedimentary basins could reveal important low enthalpy resources. The evaluation of the geothermal potential in such geological contexts involves the synergic use of geophysical and hydrogeological methodologies. In sedimentary basins a large amount of thermal and hydraulic data is generally available from petroleum wells. Unfortunately, borehole temperature data are often affected by a number of perturbations which make very difficult determination of the true geothermal gradient. In this paper we addressed the importance of the acquisition of thermal parameters (temperature, geothermal gradient, thermal properties of the rock) and the technical processing which is necessary to obtain reliable geothermal characterizations. In particular, techniques for corrections of bottom-hole temperature (BHT) data were reviewed. The objective was to create a working formula usable for computing the undisturbed formation temperature for specific sedimentary basins. As test areas, we analysed the sedimentary basins of northern Italy. Two classical techniques for processing temperature data from oil wells are customarily used: (i) the method by Horner, that requires two or more measurements of bottom-hole temperatures carried out at the same depth but at different shut-in times te and (ii) the technique by Cooper and Jones, in which several physical parameters of the mud and formation need to be known. We applied both methods to data from a number of petroleum explorative wells located in two areas of the Po Plain (Apenninic buried arc and South Piedmont Basin - Pedealpine homocline). From a set of about 40 wells

Coupling genetics and proteomics to identify aphid proteins associated with vector-specific transmission of polerovirus (luteoviridae).

PubMed

Yang, Xiaolong; Thannhauser, T W; Burrows, Mary; Cox-Foster, Diana; Gildow, Fred E; Gray, Stewart M

2008-01-01

Cereal yellow dwarf virus-RPV (CYDV-RPV) is transmitted specifically by the aphids Rhopalosiphum padi and Schizaphis graminum in a circulative nonpropagative manner. The high level of vector specificity results from the vector aphids having the functional components of the receptor-mediated endocytotic pathways to allow virus to transverse the gut and salivary tissues. Studies of F(2) progeny from crosses of vector and nonvector genotypes of S. graminum showed that virus transmission efficiency is a heritable trait regulated by multiple genes acting in an additive fashion and that gut- and salivary gland-associated factors are not genetically linked. Utilizing two-dimensional difference gel electrophoresis to compare the proteomes of vector and nonvector parental and F(2) genotypes, four aphid proteins (S4, S8, S29, and S405) were specifically associated with the ability of S. graminum to transmit CYDV-RPV. The four proteins were coimmunoprecipitated with purified RPV, indicating that the aphid proteins are capable of binding to virus. Analysis by mass spectrometry identified S4 as a luciferase and S29 as a cyclophilin, both of which have been implicated in macromolecular transport. Proteins S8 and S405 were not identified from available databases. Study of this unique genetic system coupled with proteomic analysis indicated that these four virus-binding aphid proteins were specifically inherited and conserved in different generations of vector genotypes and suggests that they play a major role in regulating polerovirus transmission.

Seismic stratigraphy of sedimentary cover in Amerasian Basin based on the results of Russian High Arctic expeditions

NASA Astrophysics Data System (ADS)

Poselov, Viktor; Kireev, Artem; Smirnov, Oleg; Butsenko, Viktor; Zholondz, Sergey; Savin, Vasily

2016-04-01

Massive amount of multichannel seismic (MCS) data were obtained by Russian High Arct ic expeditions "Arctica-2011", "Acrtica-2012" and "Arctica-2014". More than 40 MCS lines are located in the Amerasian basin and help to substantiate the seismic stratigraphy model of its sedimentary cover. The proposed seismic stratigraphy model was successively determined for the Cenozoic and pre-Cenozoic parts of the sedimentary section and was based on correlation of the Russian MCS data and seismic data documented by boreholes. Cenozoic part of the sedimentary cover is based on correlation of the Russian MCS data and AWI91090 section calibrated by ACEX-2004 boreholes on the Lomonosov Ridge. Two major unconformities are traced. The upper regional unconformity (RU) is associated with a major pre-Miocene hiatus. Another major hiatus is recorded in the borehole section between the Campanian and the Upper Paleocene units. It is recognized as the post-Campanian unconformity (pCU) in the seismic sections. Formation of the regional unconformities is associated with a fundamental change in depositional environment. Formation of RU was initiated by opening of the Fram Strait gateway at the Paleogene/Neogene boundary. Post-Campanian unconformity is linked with the initial stage of the Eurasian Basin opening between the Cretaceous and the Paleogene. Cenozoic sedimentary units are continuously traced from the East-Siberian and Chukchi sea shelves across the transit zone to the Amerasian basin. Paleogene unit (between pCU and RU) is formed under the neritic depositional environment and it is characterized by an extremely small thickness on the Lomonosov Ridge (less than 200 m), on the Mendeleev Rise and in the Podvodnikov Basin (not more than 300-400 m). Neogene unit (above RU) consists of hemipelagic deposits and occupies the essential part of thickness of the Cenozoic section in Podvodnikov and Makarov Basins. Interval velocities in the Paleogene unit vary within 2.8-3.2 km/s, in the

Structural development of the onshore Otway passive margin (Australia): the interaction of rotating syn-sedimentary faults

NASA Astrophysics Data System (ADS)

Tanner, David C.; Ziesch, Jennifer; Krawczyk, Charlotte M.

2017-04-01

Within the context of long-term CO2 storage integrity, we interpreted the faults within the 2.2 km thick, syn-rift, Late Cretaceous to Recent sediments below the CO2CRC Otway Project site in Australia using a detailed interpretation of a 3-D reflection seismic cube (32.3 km×14.35 km × 4100 ms TWT). All the faults in the onshore Otway passive margin basin in this area were active to varying degrees during sedimentation, between ca. 120 and 50 Ma, before they died out. From analysis of fault juxtaposition and fault tip-line propagation maps, as well as analysis of individual stratigraphic thickness maps, we determine the direction and incremental amount of syn-sedimentary movement on each fault. Thickening of the hanging-walls of the faults occurred, as is typical for syn-sedimentary faults. However, we also determine that substantial local footwall thinning took place. Although the syn-sedimentary behaviour of the faults was constantly maintained until 50 Ma, there were two main phases of footwall thinning, separated by a quiescent phase. We postulate that these phases of footwall thinning represent rotation of the fault blocks that correlate with prograding sediment pulses within the passive margin. The rotation of the fault blocks occurred simultaneously, i.e., they could only rotate if they interacted.

Identifying Military and Combat-Specific Risk Factors for Child Adjustment: Comparing High and Low Risk Military Families and Civilian Families

DTIC Science & Technology

2016-08-01

Award Number: W81XWH-12-2-0034 TITLE: Identifying Military and Combat-Specific Risk Factors for Child Adjustment: Comparing High and Low Risk...2. REPORT TYPE Final 3. DATES COVERED (From - To) 15May2012 - 31Aug2016 Identifying Military and Combat-Specific Risk Factors for Child Adjustment...deployment and has a child between the age of 3 and 7 and comparison groups of civilain single parent families (N=200) and civilian dual parent

Tracing the source of sedimentary organic carbon in the Loess Plateau of China: An integrated elemental ratio, stable carbon signatures, and radioactive isotopes approach.

PubMed

Liu, Chun; Dong, Yuting; Li, Zhongwu; Chang, Xiaofeng; Nie, Xiaodong; Liu, Lin; Xiao, Haibing; Bashir, Hassan

2017-02-01

Soil erosion, which will induce the redistribution of soil and associated soil organic carbon (SOC) on the Earth's surface, is of critically importance for biogeochemical cycling of essential elements and terrestrial carbon sequestration. Despite the importance of soil erosion, surprisingly few studies have evaluated the sources of eroded carbon (C). This study used natural abundance levels of the stable isotope signature ( 13 C) and radioactive isotopes ( 137 Cs and 210 Pb ex ), along with elements ratio (C/N) based on a two end member mixing model to qualitatively and quantitatively identify the sources of sedimentary OC retained by check dam in the Qiaozigou small watershed in the Loess Plateau, China. Sediment profiles (0-200 cm) captured at natural depositional area of the basin was compared to possible source materials, which included: superficial Loess mineral soils (0-20 cm) from three land use types [i.e., grassland (Medicago sativa), forestland (Robinia pseudoacacia.), shrubland (Prunus sibirica), and gully land (Loess parent material.)]. The results demonstrated that SOC in sediments showed significantly negative correlation with pH (P < 0.01), and positive correlation with soil water content (SWC) (P < 0.05). The sedimentary OC was not derived from grasslands or gullies. Forestland and shrubland were two main sources of eroded organic carbon within the surface sediment (0-60 cm deep), except for that in the 20-40 cm soil layer. Radionuclides analyses also implied that the surface sediments retained by check-dams mainly originated from soils of forestland and shrubland. Results of the two end-member mixing model demonstrated that more than 50% SOC (mean probability estimate (MPE) 50.13% via 13 C and 60.53% via C/N) in surface sediment (0-20 cm deep) derived from forestland, whereas subsurface sedimentary SOC (20-200 cm) mainly resulted from shrubland (MPE > 50%). Although uncertainties on the sources of SOC in deep soils exist, the soil

Sedimentary Geothermal Feasibility Study: October 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Augustine, Chad; Zerpa, Luis

The objective of this project is to analyze the feasibility of commercial geothermal projects using numerical reservoir simulation, considering a sedimentary reservoir with low permeability that requires productivity enhancement. A commercial thermal reservoir simulator (STARS, from Computer Modeling Group, CMG) is used in this work for numerical modeling. In the first stage of this project (FY14), a hypothetical numerical reservoir model was developed, and validated against an analytical solution. The following model parameters were considered to obtain an acceptable match between the numerical and analytical solutions: grid block size, time step and reservoir areal dimensions; the latter related to boundarymore » effects on the numerical solution. Systematic model runs showed that insufficient grid sizing generates numerical dispersion that causes the numerical model to underestimate the thermal breakthrough time compared to the analytic model. As grid sizing is decreased, the model results converge on a solution. Likewise, insufficient reservoir model area introduces boundary effects in the numerical solution that cause the model results to differ from the analytical solution.« less

Thermal regimes of Malaysian sedimentary basins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdul Halim, M.F.

1994-07-01

Properly corrected and calibrated thermal data are important in estimating source-rock maturation, diagenetics, evolution of reservoirs, pressure regimes, and hydrodynamics. Geothermal gradient, thermal conductivity, and heat flow have been determined for the sedimentary succession penetrated by exploratory wells in Malaysia. Geothermal gradient and heat-flow maps show that the highest average values are in the Malay Basin. The values in the Sarawak basin are intermediate between those of the Malay basin and the Sabah Basin, which contains the lowest average values. Temperature data were analyzed from more than 400 wells. An important parameter that was studied in detail is the circulationmore » time. The correct circulation time is essential in determining the correct geothermal gradient of a well. It was found that the most suitable circulation time for the Sabah Basin is 20 hr, 30 hr for the Sarawak Basin and 40 hr for the Malay Basin. Values of thermal conductivity, determined from measurement and calibrated calculations, were grouped according to depositional units and cycles in each basin.« less

MODTOHAFSD — A GUI based JAVA code for gravity analysis of strike limited sedimentary basins by means of growing bodies with exponential density contrast-depth variation: A space domain approach

NASA Astrophysics Data System (ADS)

Chakravarthi, V.; Sastry, S. Rajeswara; Ramamma, B.

2013-07-01

Based on the principles of modeling and inversion, two interpretation methods are developed in the space domain along with a GUI based JAVA code, MODTOHAFSD, to analyze the gravity anomalies of strike limited sedimentary basins using a prescribed exponential density contrast-depth function. A stack of vertical prisms all having equal widths, but each one possesses its own limited strike length and thickness, describes the structure of a sedimentary basin above the basement complex. The thicknesses of prisms represent the depths to the basement and are the unknown parameters to be estimated from the observed gravity anomalies. Forward modeling is realized in the space domain using a combination of analytical and numerical approaches. The algorithm estimates the initial depths of a sedimentary basin and improves them, iteratively, based on the differences between the observed and modeled gravity anomalies within the specified convergence criteria. The present code, works on Model-View-Controller (MVC) pattern, reads the Bouguer gravity anomalies, constructs/modifies regional gravity background in an interactive approach, estimates residual gravity anomalies and performs automatic modeling or inversion based on user specification for basement topography. Besides generating output in both ASCII and graphical forms, the code displays (i) the changes in the depth structure, (ii) nature of fit between the observed and modeled gravity anomalies, (iii) changes in misfit, and (iv) variation of density contrast with iteration in animated forms. The code is used to analyze both synthetic and real field gravity anomalies. The proposed technique yielded information that is consistent with the assumed parameters in case of synthetic structure and with available drilling depths in case of field example. The advantage of the code is that it can be used to analyze the gravity anomalies of sedimentary basins even when the profile along which the interpretation is intended fails to

Seismic evidence for complex sedimentary control of Greenland Ice Sheet flow

PubMed Central

Kulessa, Bernd; Hubbard, Alun L.; Booth, Adam D.; Bougamont, Marion; Dow, Christine F.; Doyle, Samuel H.; Christoffersen, Poul; Lindbäck, Katrin; Pettersson, Rickard; Fitzpatrick, Andrew A. W.; Jones, Glenn A.

2017-01-01

The land-terminating margin of the Greenland Ice Sheet has slowed down in recent decades, although the causes and implications for future ice flow are unclear. Explained originally by a self-regulating mechanism where basal slip reduces as drainage evolves from low to high efficiency, recent numerical modeling invokes a sedimentary control of ice sheet flow as an alternative hypothesis. Although both hypotheses can explain the recent slowdown, their respective forecasts of a long-term deceleration versus an acceleration of ice flow are contradictory. We present amplitude-versus-angle seismic data as the first observational test of the alternative hypothesis. We document transient modifications of basal sediment strengths by rapid subglacial drainages of supraglacial lakes, the primary current control on summer ice sheet flow according to our numerical model. Our observations agree with simulations of initial postdrainage sediment weakening and ice flow accelerations, and subsequent sediment restrengthening and ice flow decelerations, and thus confirm the alternative hypothesis. Although simulated melt season acceleration of ice flow due to weakening of subglacial sediments does not currently outweigh winter slowdown forced by self-regulation, they could dominate over the longer term. Subglacial sediments beneath the Greenland Ice Sheet must therefore be mapped and characterized, and a sedimentary control of ice flow must be evaluated against competing self-regulation mechanisms. PMID:28835915

Seismic evidence for complex sedimentary control of Greenland Ice Sheet flow.

PubMed

Kulessa, Bernd; Hubbard, Alun L; Booth, Adam D; Bougamont, Marion; Dow, Christine F; Doyle, Samuel H; Christoffersen, Poul; Lindbäck, Katrin; Pettersson, Rickard; Fitzpatrick, Andrew A W; Jones, Glenn A

2017-08-01

The land-terminating margin of the Greenland Ice Sheet has slowed down in recent decades, although the causes and implications for future ice flow are unclear. Explained originally by a self-regulating mechanism where basal slip reduces as drainage evolves from low to high efficiency, recent numerical modeling invokes a sedimentary control of ice sheet flow as an alternative hypothesis. Although both hypotheses can explain the recent slowdown, their respective forecasts of a long-term deceleration versus an acceleration of ice flow are contradictory. We present amplitude-versus-angle seismic data as the first observational test of the alternative hypothesis. We document transient modifications of basal sediment strengths by rapid subglacial drainages of supraglacial lakes, the primary current control on summer ice sheet flow according to our numerical model. Our observations agree with simulations of initial postdrainage sediment weakening and ice flow accelerations, and subsequent sediment restrengthening and ice flow decelerations, and thus confirm the alternative hypothesis. Although simulated melt season acceleration of ice flow due to weakening of subglacial sediments does not currently outweigh winter slowdown forced by self-regulation, they could dominate over the longer term. Subglacial sediments beneath the Greenland Ice Sheet must therefore be mapped and characterized, and a sedimentary control of ice flow must be evaluated against competing self-regulation mechanisms.

Sedimentary processes of the Bagnold Dunes: Implications for the eolian rock record of Mars.

PubMed

Ewing, R C; Lapotre, M G A; Lewis, K W; Day, M; Stein, N; Rubin, D M; Sullivan, R; Banham, S; Lamb, M P; Bridges, N T; Gupta, S; Fischer, W W

2017-12-01

The Mars Science Laboratory rover Curiosity visited two active wind-blown sand dunes within Gale crater, Mars, which provided the first ground-based opportunity to compare Martian and terrestrial eolian dune sedimentary processes and study a modern analog for the Martian eolian rock record. Orbital and rover images of these dunes reveal terrestrial-like and uniquely Martian processes. The presence of grainfall, grainflow, and impact ripples resembled terrestrial dunes. Impact ripples were present on all dune slopes and had a size and shape similar to their terrestrial counterpart. Grainfall and grainflow occurred on dune and large-ripple lee slopes. Lee slopes were ~29° where grainflows were present and ~33° where grainfall was present. These slopes are interpreted as the dynamic and static angles of repose, respectively. Grain size measured on an undisturbed impact ripple ranges between 50 μm and 350 μm with an intermediate axis mean size of 113 μm (median: 103 μm). Dissimilar to dune eolian processes on Earth, large, meter-scale ripples were present on all dune slopes. Large ripples had nearly symmetric to strongly asymmetric topographic profiles and heights ranging between 12 cm and 28 cm. The composite observations of the modern sedimentary processes highlight that the Martian eolian rock record is likely different from its terrestrial counterpart because of the large ripples, which are expected to engender a unique scale of cross stratification. More broadly, however, in the Bagnold Dune Field as on Earth, dune-field pattern dynamics and basin-scale boundary conditions will dictate the style and distribution of sedimentary processes.

Sedimentary processes of the Bagnold Dunes: Implications for the eolian rock record of Mars

PubMed Central

Lapotre, M. G. A.; Lewis, K. W.; Day, M.; Stein, N.; Rubin, D. M.; Sullivan, R.; Banham, S.; Lamb, M. P.; Bridges, N. T.; Gupta, S.; Fischer, W. W.

2017-01-01

Abstract The Mars Science Laboratory rover Curiosity visited two active wind‐blown sand dunes within Gale crater, Mars, which provided the first ground‐based opportunity to compare Martian and terrestrial eolian dune sedimentary processes and study a modern analog for the Martian eolian rock record. Orbital and rover images of these dunes reveal terrestrial‐like and uniquely Martian processes. The presence of grainfall, grainflow, and impact ripples resembled terrestrial dunes. Impact ripples were present on all dune slopes and had a size and shape similar to their terrestrial counterpart. Grainfall and grainflow occurred on dune and large‐ripple lee slopes. Lee slopes were ~29° where grainflows were present and ~33° where grainfall was present. These slopes are interpreted as the dynamic and static angles of repose, respectively. Grain size measured on an undisturbed impact ripple ranges between 50 μm and 350 μm with an intermediate axis mean size of 113 μm (median: 103 μm). Dissimilar to dune eolian processes on Earth, large, meter‐scale ripples were present on all dune slopes. Large ripples had nearly symmetric to strongly asymmetric topographic profiles and heights ranging between 12 cm and 28 cm. The composite observations of the modern sedimentary processes highlight that the Martian eolian rock record is likely different from its terrestrial counterpart because of the large ripples, which are expected to engender a unique scale of cross stratification. More broadly, however, in the Bagnold Dune Field as on Earth, dune‐field pattern dynamics and basin‐scale boundary conditions will dictate the style and distribution of sedimentary processes. PMID:29497590

Isotopic and elemental chemistry of sedimentary pyrite: A combined analytical and statistical approach to a novel planetary biosignature

NASA Astrophysics Data System (ADS)

Figueroa, M. C.; Gregory, D. D.; Lyons, T. W.; Williford, K. H.

2017-12-01

Life processes affect trace element abundances in pyrite such that sedimentary and hydrothermal pyrite have significantly different trace element signatures. Thus, we propose that these biogeochemical data could be used to identify pyrite that formed biogenetically either early in our planet's history or on other planets, particularly Mars. The potential for this approach is elevated because pyrite is common in diverse sedimentary settings, and its trace element content can be preserved despite secondary overprints up to greenschist facies, thus minimizing the concerns about remobilization that can plague traditional whole rock studies. We are also including in-situ sulfur isotope analysis to further refine our understanding of the complex signatures of ancient pyrite. Sulfur isotope data can point straightforwardly to the involvement of life, because pyrite in sediments is inextricably linked to bacterial sulfate reduction and its diagnostic isotopic expressions. In addition to analyzing pyrite of known biological origin formed in the modern and ancient oceans under a range of conditions, we are building a data set for pyrite formed by hydrothermal and metamorphic processes to minimize the risk of false positives in life detection. We have used Random Forests (RF), a machine learning statistical technique with proven efficiency for classifying large geological datasets, to classify pyrite into biotic and abiotic end members. Coupling the trace element and sulfur isotope data from our analyses with a large existing dataset from diverse settings has yielded 4500 analyses with 18 different variables. Our initial results reveal the promise of the RF approach, correctly identifying biogenic pyrite 97 percent of the time. We will continue to couple new in-situ S-isotope and trace element analyses of biogenic pyrite grains from modern and ancient environments, using cutting-edge microanalytical techniques, with new data from high temperature settings. Our ultimately goal

Environmental and human impact on the sedimentary dynamic in the Rhone Delta subaquatic canyons (France-Switzerland)

NASA Astrophysics Data System (ADS)

Arantegui, A.; Corella, J. P.; Loizeau, J. L.; Anselmetti, F. S.; Girardclos, S.

2012-04-01

Deltas are very sensitive environments and highly vulnerable to variations in water discharge and the amount of suspended sediment load provided by the delta-forming currents. Human activities in the watershed, such as building of dams and irrigation ditches, or river bed deviations, may affect the discharge regime and sediment input, thus affecting delta growth. Underwater currents create deeply incised canyons cutting into the delta lobes. Understanding the sedimentary processes in these subaquatic canyons is crucial to reconstruct the fluvial evolution and human impact on deltaic environments and to carry out a geological risk assessment related to mass movements, which may affect underwater structures and civil infractructure. Recently acquired high-resolution multibeam bathymetry on the Rhone Delta in Lake Geneva (Sastre et al. 2010) revealed the complexity of the underwater morphology formed by active and inactive canyons first described by Forel (1892). In order to unravel the sedimentary processes and sedimentary evolution in these canyons, 27 sediment cores were retrieved in the distal part of each canyon and in the canyon floor/levee complex of the active canyon. Geophysical, sedimentological, geochemical and radiometric dating techniques were applied to analyse these cores. Preliminary data show that only the canyon originating at the current river mouth is active nowadays, while the others remain inactive since engineering works in the watershed occurred, confirming Sastre et al. (2010). However, alternating hemipelagic and turbiditic deposits on the easternmost canyons, evidence underflow processes during the last decades as well. Two canyons, which are located close to the Rhone river mouth, correspond to particularly interesting deeply incised crevasse channels formed when the underwater current broke through the outer bend of a meander in the proximal northern levee. In these canyons, turbidites occur in the sediment record indicating ongoing

Identifying Military and Combat Specific Risk Factors for Child Adjustment: Comparing High and Low Risk Military Families and Civilian Families

DTIC Science & Technology

2016-06-01

Award Number: W81XWH-12-2-0034 TITLE: Identifying Military and Combat-Specific Risk Factors for Child Adjustment: Comparing High and Low Risk...2. REPORT TYPE Annual 3. DATES COVERED (From - To) 15 May - 2013 - 14 May 2014. Identifying Military and Combat-Specific Risk Factors for Child ...parents (N=200) whose spouse/partner is currently in a “low perceived risk” deployment and has a child between the age of 3 and 7 and comparison

The Cenozoic western Svalbard margin: sediment geometry and sedimentary processes in an area of ultraslow oceanic spreading

NASA Astrophysics Data System (ADS)

Amundsen, Ingrid Marie Hasle; Blinova, Maria; Hjelstuen, Berit Oline; Mjelde, Rolf; Haflidason, Haflidi

2011-12-01

The northeastern high-latitude North Atlantic is characterised by the Bellsund and Isfjorden fans on the continental slope off west Svalbard, the asymmetrical ultraslow Knipovich spreading ridge and a 1,000 m deep rift valley. Recently collected multichannel seismic profiles and bathymetric records now provide a more complete picture of sedimentary processes and depositional environments within this region. Both downslope and alongslope sedimentary processes are identified in the study area. Turbidity currents and deposition of glacigenic debris flows are the dominating downslope processes, whereas mass failures, which are a common process on glaciated margins, appear to have been less significant. The slide debrite observed on the Bellsund Fan is most likely related to a 2.5-1.7 Ma old failure on the northwestern Barents Sea margin. The seismic records further reveal that alongslope current processes played a major role in shaping the sediment packages in the study area. Within the Knipovich rift valley and at the western rift flank accumulations as thick as 950-1,000 m are deposited. We note that oceanic basement is locally exposed within the rift valley, and that seismostratigraphic relationships indicate that fault activity along the eastern rift flank lasted until at least as recently as 1.5 Ma. A purely hemipelagic origin of the sediments in the rift valley and on the western rift flank is unlikely. We suggest that these sediments, partly, have been sourced from the western Svalbard—northwestern Barents Sea margin and into the Knipovich Ridge rift valley before continuous spreading and tectonic activity caused the sediments to be transported out of the valley and westward.

Transcriptome Analysis of Mycobacteria-Specific CD4+ T Cells Identified by Activation-Induced Expression of CD154.

PubMed

Kunnath-Velayudhan, Shajo; Goldberg, Michael F; Saini, Neeraj K; Johndrow, Christopher T; Ng, Tony W; Johnson, Alison J; Xu, Jiayong; Chan, John; Jacobs, William R; Porcelli, Steven A

2017-10-01

Analysis of Ag-specific CD4 + T cells in mycobacterial infections at the transcriptome level is informative but technically challenging. Although several methods exist for identifying Ag-specific T cells, including intracellular cytokine staining, cell surface cytokine-capture assays, and staining with peptide:MHC class II multimers, all of these have significant technical constraints that limit their usefulness. Measurement of activation-induced expression of CD154 has been reported to detect live Ag-specific CD4 + T cells, but this approach remains underexplored and, to our knowledge, has not previously been applied in mycobacteria-infected animals. In this article, we show that CD154 expression identifies adoptively transferred or endogenous Ag-specific CD4 + T cells induced by Mycobacterium bovis bacillus Calmette-Guérin vaccination. We confirmed that Ag-specific cytokine production was positively correlated with CD154 expression by CD4 + T cells from bacillus Calmette-Guérin-vaccinated mice and show that high-quality microarrays can be performed from RNA isolated from CD154 + cells purified by cell sorting. Analysis of microarray data demonstrated that the transcriptome of CD4 + CD154 + cells was distinct from that of CD154 - cells and showed major enrichment of transcripts encoding multiple cytokines and pathways of cellular activation. One notable finding was the identification of a previously unrecognized subset of mycobacteria-specific CD4 + T cells that is characterized by the production of IL-3. Our results support the use of CD154 expression as a practical and reliable method to isolate live Ag-specific CD4 + T cells for transcriptomic analysis and potentially for a range of other studies in infected or previously immunized hosts. Copyright © 2017 by The American Association of Immunologists, Inc.

Evidence for and implications of sedimentary diapirism and mud volcanism in the southern Utopia highland-lowland boundary plain, Mars

USGS Publications Warehouse

Skinner, J.A.; Tanaka, K.L.

2007-01-01

Several types of spatially associated landforms in the southern Utopia Planitia highland-lowland boundary (HLB) plain appear to have resulted from localized geologic activity, including (1) fractured rises, (2) elliptical mounds, (3) pitted cones with emanating lobate materials, and (4) isolated and coalesced cavi (depressions). Stratigraphic analysis indicates these features are Hesperian or younger and may be associated with resurfacing that preferentially destroyed smaller (< 8 ?? km diameter) impact craters. Based on landform geomorphologies and spatial distributions, the documented features do not appear to be specifically related to igneous or periglacial processes or the back-wasting and erosion of the HLB scarp. We propose that these features are genetically related to and formed by sedimentary (mud) diapirs that ascended from zones of regionally confined, poorly consolidated, and mechanically weak material. We note morphologic similarities between the mounds and pitted cones of the southern Utopia boundary plain and terrestrial mud volcanoes in the Absheron Peninsula, Azerbaijan. These analogs provide a context for understanding the geological environments and processes that supported mud diapir-related modification of the HLB. In southern Utopia, mud diapirs near the Elysium volcanic edifice may have resulted in laccolith-like intrusions that produced the fractured rises, while in the central boundary plain mud diapirs could have extruded to form pitted cones, mounds, and lobate flows, perhaps related to compressional stresses that account for wrinkle ridges. The removal of material a few kilometers deep by diapiric processes may have resulted in subsidence and deformation of surface materials to form widespread cavi. Collectively, these inferences suggest that sedimentary diapirism and mud volcanism as well as related surface deformations could have been the dominant Hesperian mechanisms that altered the regional boundary plain. We discuss a model in

Repeated fault rupture recorded by paleoenvironmental changes in a wetland sedimentary sequence ponded against the Alpine Fault, New Zealand

NASA Astrophysics Data System (ADS)

Clark, K.; Berryman, K. R.; Cochran, U. A.; Bartholomew, T.; Turner, G. M.

2010-12-01

At Hokuri Creek, in south Westland, New Zealand, an 18 m thickness of Holocene sediments has accumulated against the upthrown side of the Alpine Fault. Recent fluvial incision has created numerous exposures of this sedimentary sequence. At a decimetre to metre scale there are two dominant types of sedimentary units: clastic-dominated, grey silt packages, and organic-dominated, light brown peaty-silt units. These units represent repeated alternations of the paleoenvironment due to fault rupture over the past 7000 years. We have located the event horizons within the sedimentary sequence, and identified evidence to support earthquake-driven paleoenvironmental change (rather than climatic variability), and developed a model of paleoenvironmental changes over a typical seismic cycle. To quantitatively characterise the sediments we use high resolution photography, x-ray imaging, magnetic-susceptibility and total carbon analysis. To understand the depositional environment we used diatom and pollen studies. The organic-rich units have very low magnetic susceptibility and density values, with high greyscale and high total carbon values. Diatoms indicate these units represent stable wetland environments with standing water and predominantly in-situ organic material deposition. The clastic-rich units are characterised by higher magnetic susceptibility and density values, with low greyscale and total carbon. The clastic-rich units represent environments of flowing water and deep pond settings that received predominantly catchment-derived silt and sand. The event horizon is located at the upper contact of the organic-rich horizons. The event horizon contact marks a drastic change in hydrologic regime as fault rupture changed the stream base level and there was a synchronous influx of clastic sediment as the catchment responded to earthquake shaking. During the interseismic period the flowing-water environment gradually stabilised and returned to an organic-rich wetland. Such

Major element compositions of fluid inclusions from hydrothermal vein-type deposits record eroded sedimentary units in the Schwarzwald district, SW Germany

NASA Astrophysics Data System (ADS)

Walter, Benjamin F.; Burisch, Mathias; Marks, Michael A. W.; Markl, Gregor

2017-12-01

Mixing of sedimentary formation fluids with basement-derived brines is an important mechanism for the formation of hydrothermal veins. We focus on the sources of the sediment-derived fluid component in ore-forming processes and present a comprehensive fluid inclusion study on 84 Jurassic hydrothermal veins from the Schwarzwald mining district (SW Germany). Our data derive from about 2300 fluid inclusions and reveal differences in the average fluid composition between the northern, central, and southern Schwarzwald. Fluids from the northern and southern Schwarzwald are characterised by high salinities (18-26 wt% NaCl+CaCl2), low Ca/(Ca+Na) mole ratios (0.1-0.4), and variable Cl/Br mass ratios (30-1140). In contrast, fluids from the central Schwarzwald show even higher salinities (23-27 wt% NaCl+CaCl2), higher Ca/(Ca+Na) mole ratios (0.2-0.9), and less variable Cl/Br mass ratios (40-130). These fluid compositions correlate with the nature and thickness of the now eroded sedimentary cover rocks. Compared to the northern and the southern Schwarzwald, where halite precipitation occurred during the Middle Triassic, the sedimentary basin in the central Schwarzwald was relatively shallow at this time and no halite was precipitated. Accordingly, Cl/Br ratios of fluids from the central Schwarzwald provide no evidence for the reaction of a sedimentary brine with halite, whereas those from the northern and southern Schwarzwald do. Instead, elevated Ca/(Ca+Na), high SO4 contents, and relatively low Cl/Br imply the presence of a gypsum dissolution brine during vein formation in the central Schwarzwald which agrees with the reconstructed regional Triassic geology. Hence, the information archived in fluid inclusions from hydrothermal veins in the crystalline basement has the potential for reconstructing sedimentary rocks in the former overburden.

Assessment of sedimentary Cu availability: A comparison of biomimetic and AVS approaches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Z.; Mayer, L.M.

1999-02-15

Sedimentary Cu bioavailability during deposit feeding is determined by both the digestive physiology of the organisms and the geochemistry of the sediments. The authors assessed the contribution of these two factors by using a biomimetic approach involving extraction of Cu with digestive fluids of two deposit feeders and one suspension feeder and a geochemical approach measuring Cu associated with acid-volatile sulfide (AVS) in sediments. Cu bioavailability determined by the biomimetic method varied among species with varying digestive physiology but all showed a marked increase when SEM{sub Cu}-AVS {ge} 0, corroborating the premise underlying the AVS method in determining sedimentary Cumore » bioavailability. The existence of a positive SEM{sub Cu}-AVS threshold suggests the existence of additional Cu-binding phases or mixed Cu(I)--Cu(II) sulfides in sediments. In addition, Cu bioavailable to digestive fluids was much less than that measured as SEM{sub Cu}-AVS, indicating that the AVS method overestimates Cu bioavailability to digestive fluid of deposit feeders. Incubation of digestive fluids with two Cu-bound model phases, goethite and sulfide, corroborated the relative unavailability of sulfide-bound Cu. Subsurface deposit feeders feeding on anoxic sediments may be exposed to less Cu than their surface-feeding counterparts in Cu-contaminated environments.« less

Neogene marine sedimentary record of the Gulf of Alaska: from the glaciers to the distal submarine fan systems

NASA Astrophysics Data System (ADS)

Ridgway, K. D.; Bahlburg, H.; Childress, L. B.; Cowan, E. A.; Forwick, M.; Moy, C. M.; Müller, J.; Ribeiro, F.; Gupta, S.; Gulick, S. P.; Jaeger, J. M.

2013-12-01

The marine sedimentary record of Miocene to Pleistocene tectonics and glaciation is well preserved along the southern Alaska convergent margin. This margin is well suited for linking proximal to distal sediment transport processes because sediment is being generated by glacial erosion in the highest coastal mountain range on earth and subsequently being transported to the Aleutian subduction zone. We will discuss the sedimentary record from two end members of this system: (1) the proximal marine record now exposed onshore in the high peaks of the coastal ranges, and (2) the offshore distal record preserved in the Surveyor submarine fan system that was cored during the 2013 IODP Expedition 341. Onshore the Miocene non-glacial strata are represented by the Poul Creek Fm. This unit is 2000 m thick and in its upper part consists of mudstone, thin sandstone beds (10-30 cm thick), and thick bedded (1-2 m) highly bioturbated green sandstone beds that contain hummocky stratification. We interpret this unit as being deposited mainly in marine shelf environments. A gradational contact between the Poul Creek and the overlying upper Miocene-Pleistocene Yakataga Formation is marked by a transition to mudstone, thick bedded sandstone and glacial diamictite. This transition to glacial dominated deposition is interpreted to have occurred around 5 Ma based on previous studies. The onshore glacimarine strata are 5 km thick and grade up section from submarine fan to marine shelf strata. In the distal submarine fan record at IODP Site U1417, the upper Miocene strata in the lower part of the Site consist of 340 m of highly bioturbated gray to green mud interbedded with coarse sand and sandy diamict. These coarse-grained units are lithic rich with mainly sedimentary, volcanic, and coal clasts. We interpret these units as being derived from coal-bearing sedimentary strata exposed in the onshore thrust belt. These facies are interbedded with diatom ooze; we interpret this combination of

Seeking Signs of Life on Mars: The Importance of Sedimentary Suites as Part of Mars Sample Return

NASA Astrophysics Data System (ADS)

iMOST Team; Mangold, N.; McLennan, S. M.; Czaja, A. D.; Ori, G. G.; Tosca, N. J.; Altieri, F.; Amelin, Y.; Ammannito, E.; Anand, M.; Beaty, D. W.; Benning, L. G.; Bishop, J. L.; Borg, L. E.; Boucher, D.; Brucato, J. R.; Busemann, H.; Campbell, K. A.; Carrier, B. L.; Debaille, V.; Des Marais, D. J.; Dixon, M.; Ehlmann, B. L.; Farmer, J. D.; Fernandez-Remolar, D. C.; Fogarty, J.; Glavin, D. P.; Goreva, Y. S.; Grady, M. M.; Hallis, L. J.; Harrington, A. D.; Hausrath, E. M.; Herd, C. D. K.; Horgan, B.; Humayun, M.; Kleine, T.; Kleinhenz, J.; Mackelprang, R.; Mayhew, L. E.; McCubbin, F. M.; McCoy, J. T.; McSween, H. Y.; Moser, D. E.; Moynier, F.; Mustard, J. F.; Niles, P. B.; Raulin, F.; Rettberg, P.; Rucker, M. A.; Schmitz, N.; Sefton-Nash, E.; Sephton, M. A.; Shaheen, R.; Shuster, D. L.; Siljestrom, S.; Smith, C. L.; Spry, J. A.; Steele, A.; Swindle, T. D.; ten Kate, I. L.; Usui, T.; Van Kranendonk, M. J.; Wadhwa, M.; Weiss, B. P.; Werner, S. C.; Westall, F.; Wheeler, R. M.; Zipfel, J.; Zorzano, M. P.

2018-04-01

Sedimentary, and especially lacustrine, depositional environments are high-priority geological/astrobiological settings for Mars Sample Return. We review the detailed investigations, measurements, and sample types required to evaluate such settings.

Hydrogeologic framework of fractured sedimentary rock, Newark Basin, New Jersey

USGS Publications Warehouse

Lacombe, Pierre J.; Burton, William C.

2010-01-01

The hydrogeologic framework of fractured sedimentary bedrock at the former Naval Air Warfare Center (NAWC), Trenton, New Jersey, a trichloroethylene (TCE)-contaminated site in the Newark Basin, is developed using an understanding of the geologic history of the strata, gamma-ray logs, and rock cores. NAWC is the newest field research site established as part of the U.S. Geological Survey Toxic Substances Hydrology Program, Department of Defense (DoD) Strategic Environmental Research and Development Program, and DoD Environmental Security Technology Certification Program to investigate contaminant remediation in fractured rock. Sedimentary bedrock at the NAWC research site comprises the Skunk Hollow, Byram, and Ewing Creek Members of the Lockatong Formation and Raven Rock Member of the Stockton Formation. Muds of the Lockatong Formation that were deposited in Van Houten cycles during the Triassic have lithified to form the bedrock that is typical of much of the Newark Basin. Four lithotypes formed from the sediments include black, carbon-rich laminated mudstone, dark-gray laminated mudstone, light-gray massive mudstone, and red massive mudstone. Diagenesis, tectonic compression, off-loading, and weathering have altered the rocks to give some strata greater hydraulic conductivity than other strata. Each stratum in the Lockatong Formation is 0.3 to 8 m thick, strikes N65 degrees E, and dips 25 degrees to 70 degrees NW. The black, carbon-rich laminated mudstone tends to fracture easily, has a relatively high hydraulic conductivity and is associated with high natural gamma-ray count rates. The dark-gray laminated mudstone is less fractured and has a lower hydraulic conductivity than the black carbon-rich laminated mudstone. The light-gray and the red massive mudstones are highly indurated and tend to have the least fractures and a low hydraulic conductivity. The differences in gamma-ray count rates for different mudstones allow gamma-ray logs to be used to correlate and

Machine-learning identifies substance-specific behavioral markers for opiate and stimulant dependence.

PubMed

Ahn, Woo-Young; Vassileva, Jasmin

2016-04-01

Recent animal and human studies reveal distinct cognitive and neurobiological differences between opiate and stimulant addictions; however, our understanding of the common and specific effects of these two classes of drugs remains limited due to the high rates of polysubstance-dependence among drug users. The goal of the current study was to identify multivariate substance-specific markers classifying heroin dependence (HD) and amphetamine dependence (AD), by using machine-learning approaches. Participants included 39 amphetamine mono-dependent, 44 heroin mono-dependent, 58 polysubstance dependent, and 81 non-substance dependent individuals. The majority of substance dependent participants were in protracted abstinence. We used demographic, personality (trait impulsivity, trait psychopathy, aggression, sensation seeking), psychiatric (attention deficit hyperactivity disorder, conduct disorder, antisocial personality disorder, psychopathy, anxiety, depression), and neurocognitive impulsivity measures (Delay Discounting, Go/No-Go, Stop Signal, Immediate Memory, Balloon Analogue Risk, Cambridge Gambling, and Iowa Gambling tasks) as predictors in a machine-learning algorithm. The machine-learning approach revealed substance-specific multivariate profiles that classified HD and AD in new samples with high degree of accuracy. Out of 54 predictors, psychopathy was the only classifier common to both types of addiction. Important dissociations emerged between factors classifying HD and AD, which often showed opposite patterns among individuals with HD and AD. These results suggest that different mechanisms may underlie HD and AD, challenging the unitary account of drug addiction. This line of work may shed light on the development of standardized and cost-efficient clinical diagnostic tests and facilitate the development of individualized prevention and intervention programs for HD and AD. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Machine-learning identifies substance-specific behavioral markers for opiate and stimulant dependence

PubMed Central

Ahn, Woo-Young; Vassileva, Jasmin

2016-01-01

Background Recent animal and human studies reveal distinct cognitive and neurobiological differences between opiate and stimulant addictions; however, our understanding of the common and specific effects of these two classes of drugs remains limited due to the high rates of polysubstance-dependence among drug users. Methods The goal of the current study was to identify multivariate substance-specific markers classifying heroin dependence (HD) and amphetamine dependence (AD), by using machine-learning approaches. Participants included 39 amphetamine mono-dependent, 44 heroin mono-dependent, 58 polysubstance dependent, and 81 non-substance dependent individuals. The majority of substance dependent participants were in protracted abstinence. We used demographic, personality (trait impulsivity, trait psychopathy, aggression, sensation seeking), psychiatric (attention deficit hyperactivity disorder, conduct disorder, antisocial personality disorder, psychopathy, anxiety, depression), and neurocognitive impulsivity measures (Delay Discounting, Go/No-Go, Stop Signal, Immediate Memory, Balloon Analogue Risk, Cambridge Gambling, and Iowa Gambling tasks) as predictors in a machine-learning algorithm. Results The machine-learning approach revealed substance-specific multivariate profiles that classified HD and AD in new samples with high degree of accuracy. Out of 54 predictors, psychopathy was the only classifier common to both types of addiction. Important dissociations emerged between factors classifying HD and AD, which often showed opposite patterns among individuals with HD and AD. Conclusions These results suggest that different mechanisms may underlie HD and AD, challenging the unitary account of drug addiction. This line of work may shed light on the development of standardized and cost-efficient clinical diagnostic tests and facilitate the development of individualized prevention and intervention programs for HD and AD. PMID:26905209

Sedimentary evidence of landscape and climate history since the end of MIS 3 in the Krkonoše Mountains, Czech Republic

NASA Astrophysics Data System (ADS)

Engel, Zbyněk; Nývlt, Daniel; Křížek, Marek; Treml, Václav; Jankovská, Vlasta; Lisá, Lenka

2010-04-01

A sedimentary core recovered from the cirque basin of Labský důl valley (1039 m a.s.l.) in the Krkonoše Mountains reflects the environmental history for approximately the last 30,000 years. Analyses of magnetic susceptibility, carbon content, pollen assemblages and macrofossil data in a 15 m thick sediment sequence provide the first continuous record of Lateglacial and Holocene vegetation history in Sudetes region of the Czech Republic. The succession of sedimentary units in the lower part of the core suggests that the cirque was ice-free before the onset of the last glaciation at the beginning of marine isotope stage 2. Highly variable climate prevailed during this period with cold conditions culminating about 18 cal ka BP. Cold climates persisted until the Lateglacial period, evidenced by an identified warming and subsequent cooling event correlated with the Younger Dryas period. Sparse, treeless vegetation dominated in the catchment area at that time. The sequence of interrupted thinly laminated silts reflects the retreat and temporary readvance of a local glacier in the cirque during 12.5-10.8 cal ka BP. Subsequently, the alpine treeline ecotone gradually shifted above the cirque floor. Palaeoclimatic conditions in the early Holocene fluctuated strongly, whereas since 5.1 cal ka BP conditions have been more stable. Pollen-based climate reconstructions suggest significant cooling at around 9.8-9.3, 7.7-7.5 and 4.0-3.3 cal ka BP. Spruce forests have dominated the site since 5.0 cal ka BP when the vegetation became similar to the modern one. Two phases of increased sedimentation were identified within the Holocene culminating about 9.2-7.5 cal ka BP and 5.8-5.5 cal ka BP. Sediment yield was as high as 2.4 mm yr -1 during the period, reflecting environmental changes during the Atlantic/Sub-Boreal transition.

Austrian phase on the northern African margin inferred from sequence stratigraphy and sedimentary records in southern Tunisia (Chotts and Djeffara areas)

NASA Astrophysics Data System (ADS)

Lazzez, Marzouk; Zouaghi, Taher; Ben Youssef, Mohamed

2008-08-01

A multidisciplinary study concerning Aptian and Albian deposits is reported from petroleum wells and the exposed section. The biostratigraphic and sedimentological analysis defined four sedimentary units. Well-logging signals' analysis allows us to refine the record resolution on Aptian series and reveals, in the Djeffara field, a transgressive system tract (TST) and a highstand system tract (HST). Exceptionally, the first sequence (S1) in the Mareth 1 well and the fifth sequence in the two wells Mareth 1 and Gourine 1 reveal the lower-stand system tract (LST). The unconformities characterized by the absence of Upper Aptian (Clansayesian) and Lower to Middle Albian deposits signed by a significant gamma-ray reduction. The Middle and Upper Albian is represented by only one deposit sequence (S6) in Mareth 1. Towards the south, in the Gourine well, two deposit sequences were identified (S6 and S7); to specify the Aptian and Albian evolution of the deposit sequences, a tentative correlation has been established between the Chotts and Djeffara areas. This correlation allows us to characterize the sedimentary unconformities related to the tectonics and eustatic events. The Chotts and the Djeffara deposition areas were developed, characterized by an irregular subsidence and separated by the Tebaga Medenine high area. The Aptian-Albian subsidence platform of southern Tunisia may be considered as a block diagram of environmental deposit with regressive and transgressive trends, showing the impact of tectonic deformations on the palaeogeographic evolution of southeastern Tunisia during the Austrian phase. This study also must be replaced within regional structural patterns that may explain both the sequential and sedimentological evolution of the area. Deformations regionally identified are integrated in the more general context of both Tethyan and Atlantic areas related to the drift of the African platform.

Identifying context-specific competencies required by community Australian Football sports trainers.

PubMed

Donaldson, Alex; Finch, Caroline F

2012-08-01

First-aid is a recommended injury prevention and risk management strategy in community sport; however, little is known about the sport-specific competencies required by first-aid providers. To achieve expert consensus on the competencies required by community Australian Football (community-AF) sports trainers. A three-round online Delphi process. Community-AF. 16 Australian sports first-aid and community-AF experts. Rating of competencies as either 'essential', 'expected', 'ideal' or 'not required'. Results After Round 3, 47 of the 77 (61%) competencies were endorsed as 'essential' or 'expected' for a sports trainer to effectively perform the activities required to the standards expected at a community-AF club by ≥75% of experts. These competencies covered: the role of the sports trainer; the responsibilities of the sports trainer; emergency management; injury and illness assessment and immediate management; taping; and injury prevention and risk management. Four competencies (5%) were endorsed as 'ideal' or 'not required' by ≥85% of experts and were excluded from further consideration. The 26 competencies where consensus was not reached were retained as second-tier, optional competencies. Sports trainers are important members of on-field first-aid teams, providing support to both injured players and other sports medicine professionals. The competencies identified in this study provide the basis of a proposed two-tiered community-AF-specific sports trainer education structure that can be implemented by the peak sports body. This includes six mandatory modules, relating to the 'required' competencies, and a further six optional modules covering competencies on which consensus was not reached.

MONKEY: Identifying conserved transcription-factor binding sitesin multiple alignments using a binding site-specific evolutionarymodel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moses, Alan M.; Chiang, Derek Y.; Pollard, Daniel A.

2004-10-28

We introduce a method (MONKEY) to identify conserved transcription-factor binding sites in multispecies alignments. MONKEY employs probabilistic models of factor specificity and binding site evolution, on which basis we compute the likelihood that putative sites are conserved and assign statistical significance to each hit. Using genomes from the genus Saccharomyces, we illustrate how the significance of real sites increases with evolutionary distance and explore the relationship between conservation and function.

Archean sedimentary styles and early crustal evolution

NASA Technical Reports Server (NTRS)

Lowe, D. R.

1986-01-01

The distinctions between and implications of early and late Archean sedimentary styles are presented. Early Archean greenstone belts, such as the Barberton of South Africa and those in the eastern Pilbar Block of Australia are characterized by fresh or slightly reworked pyroclastic debris, orthochemical sediments such as carbonates, evaporites, and silica, and biogenic deposits including cherts and stromatolitic units. Terrigenous deposits are rare, and it is suggested that early Archean sediments were deposited on shallow simatic platforms, with little or no components derived from sialic sources. In contrast, late Archean greenstone belts in the Canadian Shield and the Yilgarn Block of Australia contain coarse terrigenous clastic rocks including conglomerate, sandstone, and shale derived largely from sialic basement. Deposition appears to have taken place in deepwater, tectonically unstable environments. These observations are interpreted to indicate that the early Archean greenstone belts formed as anorogenic, shallow water, simatic platforms, with little or no underlying or adjacent continental crust, an environment similar to modern oceanic islands formed over hot spots.

Structural geology of Amazonian-aged layered sedimentary deposits in southwest Candor Chasma, Mars

USGS Publications Warehouse

Okubo, C.H.

2010-01-01

The structural geology of an outcropping of layered sedimentary deposits in southwest Candor Chasma is mapped using two adjacent high-resolution (1 m/pixel) HiRISE digital elevation models and orthoimagery. Analysis of these structural data yields new insight into the depositional and deformational history of these deposits. Bedding in non-deformed areas generally dips toward the center of west Candor Chasma, suggesting that these deposits are basin-filling sediments. Numerous kilometer-scale faults and folds characterize the deformation here. Normal faults of the requisite orientation and length for chasma-related faulting are not observed, indicating that the local sediments accumulated after chasma formation had largely ceased in this area. The cause of the observed deformation is attributed to landsliding within these sedimentary deposits. Observed crosscutting relationships indicate that a population of sub-vertical joints are the youngest deformational structures in the area. The distribution of strain amongst these joints, and an apparently youthful infill of sediment, suggests that these fractures have been active in the recent past. The source of the driving stress acting on these joints has yet to be fully constrained, but the joint orientations are consistent with minor subsidence within west Candor Chasma.

Cenozoic sedimentary dynamics of the Ouarzazate foreland basin (Central High Atlas Mountains, Morocco)

NASA Astrophysics Data System (ADS)

El Harfi, A.; Lang, J.; Salomon, J.; Chellai, E. H.

2001-06-01

Cenozoic continental sedimentary deposits of the Southern Atlas named "Imerhane Group" crop out (a) in the Ouarzazate foreland basin between the Precambrian basement of the Anti Atlas and the uplifted limestone dominated High Atlas, and (b) in the Aït Kandoula and Aït Seddrat nappes where Jurassic strata detached from the basement have been thrust southwards over the Ouarzazate Basin. New biostratigraphic and geochronological data constraining the final Eocene marine regression, the characterization of the new "Aït Ouglif Detrital Formation" presumed to be of Oligocene age, and the new stratigraphic division proposed for the Continental Imerhane Group clarify the major tectonogenetic alpidic movements of the Central High Atlas Range. Four continental formations are identified at regional scale. Their emplacement was governed principally by tectonic but also by eustatic controls. The Hadida and Aït Arbi formations (Upper Eocene) record the major Paleogene regression. They are composed of margino-littoral facies (coastal sabkhas and fluviatile systems) and reflect incipient erosion of the underlying strata and renewed fluvial drainage. The Aït Ouglif Formation (presumed Oligocene) had not been characterized before. It frequently overlies all earlier formations with an angular unconformity. It includes siliciclastic alluvial deposits and is composed predominantly of numerous thin fining-upward cycles. The Aït Kandoula Formation (Miocene-Pliocene) is discordant, extensive, and represents a thick coarsening-upward megasequence. It is composed of palustro-lacustrine deposits in a context of alluvial plain with localized sabkhas, giving way to alluvial fans and fluviatile environments. The Upper Conglomeratic Formation (Quaternary) is the trace of a vast conglomeratic pediment, forming an alluvial plain and terraces. The second and third formations correspond to two megasequences engendered by the uplift of the Central High Atlas in two major compressive phases

Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.

PubMed

Matana, Antonela; Popović, Marijana; Boutin, Thibaud; Torlak, Vesela; Brdar, Dubravka; Gunjača, Ivana; Kolčić, Ivana; Boraska Perica, Vesna; Punda, Ante; Polašek, Ozren; Hayward, Caroline; Barbalić, Maja; Zemunik, Tatijana

2018-04-18

Autoimmune thyroid diseases (AITD) are multifactorial endocrine diseases most frequently accompanied by Tg and TPO autoantibodies. Both antibodies have a higher prevalence in females and act under a strong genetic influence. To identify novel variants underlying thyroid antibody levels, we performed GWAS meta-analysis on the plasma levels of TgAb and TPOAb in three Croatian cohorts, as well as gender specific GWAS and a bivariate analysis. No significant association was detected with the level of TgAb and TPOAb in the meta-analysis of GWAS or bivariate results for all individuals. The bivariate analysis in females only revealed a genome-wide significant association for the locus near GRIN3A (rs4457391, P = 7.76 × 10 -9 ). The same locus had borderline association with TPOAb levels in females (rs1935377, P = 8.58 × 10 -8 ). In conclusion, we identified a novel gender specific locus associated with TgAb and TPOAb levels. Our findings provide a novel insight into genetic and gender differences associated with thyroid antibodies. Copyright © 2018 Elsevier Inc. All rights reserved.

Major Perspectives of The Dfg-research Programm (schwerpunktprogramm) Dynamics of Sedimentary Systems Under Varying Stress Conditions By Example of The Central European Basin-system

NASA Astrophysics Data System (ADS)

Bayer, U.; Littke, R.; Gajewski, D.; Brink, H.-J.

In 2001 a major research program "Dynamics of Sedimentary Systems under Varying Stress Conditions" has been established by the German Science Foundation (DFG). The programme effectively will start early in 2002 and in some sense provides a continuation of the EUROPROBE project TESZ. However, it will focus mainly on post-Paleozoic processes. The following sub-themes for this programme capture a wide range of areas of interest, calling for interdisciplinary research: 1. Structure and evolution of the crust. This topic will be based on the three- dimensional structural interpretation, pre-stack migration, and modelling of geophysi- cal data such as seismic, gravimetric, magnetic, and magnetotelluric data. The deriva- tion of interval velocities and the prediction of lateral inhomogeneities will be essential for the interpretation of rheological properties on one hand and historical geodynamic processes on the other. 2. Basin dynamics in space and time. Methods of basin anal- ysis, seismic stratigraphy,sedimentology, sequence- and event stratigraphy should be used in combination with subsidence analysis and basin modelling to interpret facies distributions within the evolving accomodation space of a sedimentary basin. An ad- vanced interpretation of seismic lines using new modelling tools is of key interest to extract facies patterns and related petrophysical properties for the three dimensional space of a sedimentary basin. 3. Fluid- and salt dynamics. Salt dynamics is related to the recent and historic stress fields of a basin and greatly governs the sedimentation and erosion processes at the surface. In addition, the rheology of the upper crust and the temperature field within sedimentary basins greatly depends on salt doming. Fluid dynamics is coupled to the temperature and pressure field, but depends also on the permeability of sedimentary rocks which varies by more than 15 orders of magnitude. The origin of non-hydrocarbon gases (CO2, N2, H2S), each dominating

GSHSite: Exploiting an Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity

PubMed Central

Chen, Yi-Ju; Lu, Cheng-Tsung; Huang, Kai-Yao; Wu, Hsin-Yi; Chen, Yu-Ju; Lee, Tzong-Yi

2015-01-01

S-glutathionylation, the covalent attachment of a glutathione (GSH) to the sulfur atom of cysteine, is a selective and reversible protein post-translational modification (PTM) that regulates protein activity, localization, and stability. Despite its implication in the regulation of protein functions and cell signaling, the substrate specificity of cysteine S-glutathionylation remains unknown. Based on a total of 1783 experimentally identified S-glutathionylation sites from mouse macrophages, this work presents an informatics investigation on S-glutathionylation sites including structural factors such as the flanking amino acids composition and the accessible surface area (ASA). TwoSampleLogo presents that positively charged amino acids flanking the S-glutathionylated cysteine may influence the formation of S-glutathionylation in closed three-dimensional environment. A statistical method is further applied to iteratively detect the conserved substrate motifs with statistical significance. Support vector machine (SVM) is then applied to generate predictive model considering the substrate motifs. According to five-fold cross-validation, the SVMs trained with substrate motifs could achieve an enhanced sensitivity, specificity, and accuracy, and provides a promising performance in an independent test set. The effectiveness of the proposed method is demonstrated by the correct identification of previously reported S-glutathionylation sites of mouse thioredoxin (TXN) and human protein tyrosine phosphatase 1b (PTP1B). Finally, the constructed models are adopted to implement an effective web-based tool, named GSHSite (http://csb.cse.yzu.edu.tw/GSHSite/), for identifying uncharacterized GSH substrate sites on the protein sequences. PMID:25849935

Use of mass spectrometry fingerprinting to identify urinary metabolites after consumption of specific foods.

PubMed

Lloyd, Amanda J; Favé, Gaëlle; Beckmann, Manfred; Lin, Wanchang; Tailliart, Kathleen; Xie, Long; Mathers, John C; Draper, John

2011-10-01

The lack of robust biological markers of dietary exposure hinders the quantitative understanding of causal relations between diet and health. We aimed to develop an efficient procedure to discover metabolites in urine that may have future potential as biomarkers of acute exposure to foods of high public health importance. Twenty-four participants were provided with a test breakfast in which the cereal component of a standardized breakfast was replaced by 1 of 4 foods of high public health importance; 1.5-, 3-, and 4.5-h postprandial urine samples were collected. Flow infusion electrospray-ionization mass spectrometry followed by supervised multivariate data analysis was used to discover signals resulting from consumption of each test food. Fasted-state urine samples provided a universal comparator for food biomarker lead discovery in postprandial urine. The filtering of data features associated with consumption of the common components of the standardized breakfast improved discrimination models and readily identified metabolites that showed consumption of specific test foods. A combination of trimethylamine-N-oxide and 1-methylhistidine was associated with salmon consumption. Novel ascorbate derivatives were discovered in urine after consumption of either broccoli or raspberries. Sulphonated caffeic acid and sulphonated methyl-epicatechin concentrations increased dramatically after consumption of raspberries. This biomarker lead discovery strategy can identify urinary metabolites associated with acute exposure to individual foods. Future studies are required to validate the specificity and utility of potential biomarkers in an epidemiologic context.

Highly Shocked Low Density Sedimentary Rocks from the Haughton Impact Structure, Devon Island, Nunavut, Canada

NASA Technical Reports Server (NTRS)

Osinski, G. R.; Spray, J. G.

2001-01-01

We present the preliminary results of a detailed investigation of the shock effects in highly shocked, low density sedimentary rocks from the Haughton impact structure. We suggest that some textural features can be explained by carbonate-silicate immiscibility. Additional information is contained in the original extended abstract.

Interpretation of K-Ar dates of illitic clays from sedimentary rocks aided by modeling

USGS Publications Warehouse

Srodon, J.; Clauer, Norbert; Eberl, D.D.D.

2002-01-01

K-Ar dates of illitic clays from sedimentary rocks may contain "mixed ages," i.e., may have ages that are intermediate between the ages of end-member events. Two phenomena that may cause mixed ages are: (1) long-lasting reaction during the burial illitization of smectite: and (2) physical mixing of detrital and diagenetic components. The first phenomenon was investigated by simulation of illitization reactions using a nucleation and growth mechanism. These calculations indicate that values for mixed ages are related to burial history: for an equivalent length of reaction time, fast burial followed by slow burial produces much older mixed ages than slow burial followed by fast. The type of reaction that occured in a rock can be determined from the distribution of ages with respect to the thickness of illite crystals. Dating of artificial mixtures confirms a non-linear relation between mixed ages and the proportions of the components. Vertical variation of K-Ar age dates from Gulf Coast shales can be modeled by assuming diagenetic illitization that overprints a subtle vertical trend (presumably of sedimentary origin) in detrital mineral content.

Employing extant stable carbon isotope data in Gulf of Mexico sedimentary organic matter for oil spill studies

NASA Astrophysics Data System (ADS)

Rosenheim, Brad E.; Pendergraft, Matthew A.; Flowers, George C.; Carney, Robert; Sericano, José L.; Amer, Reda M.; Chanton, Jeff; Dincer, Zeynep; Wade, Terry L.

2016-07-01

We have compiled and mapped available carbon isotope data from sedimentary organic material sampled from the Gulf of Mexico prior to 2010. These data provide a baseline to which any changes in the Gulf of Mexico after the 2010 Deepwater Horizon oil spill can be compared. The mean (±1σ) δ13C values, relative to PDB, are -21.4±1.9‰ (entire Gulf of Mexico), -21.7±1.2‰ (shelf sediments), -20.4±1.6‰ (deepwater sediments), and -25.2±4.1‰ (seep-affected sediments). We compare pre-spill mean δ13C values to carbon isotope measurements of sedimentary organic material from coretop samples collected after the 2010 Deepwater Horizon oil spill. The differences between the mean compiled δ13C values and the post-spill δ13C values are corroborated by qualitative relationships with the concentration of polycyclic aromatic hydrocarbons (PAHs), a proxy for oil contamination, in the sediment. The relationships between δ13C of the sedimentary organic material and PAH concentrations allow estimation of background levels of PAHs on the shelf and in the deep Gulf of Mexico. Higher background levels of PAH on the shelf likely relate to Mississippi River outflow and its deposition of petrogenic PAH in riverine sediments.

Glendonites in Neoproterozoic low-latitude, interglacial, sedimentary rocks, northwest Canada: Insights into the Cryogenian ocean and Precambrian cold-water carbonates

NASA Astrophysics Data System (ADS)

James, Noel P.; Narbonne, Guy M.; Dalrymple, Robert W.; Kurtis Kyser, T.

2005-01-01

Stellate crystals of ferroan dolomite in neritic siliciclastic and carbonate sedimentary rocks between Sturtian and Marinoan glaciations in the Mackenzie Mountains are interpreted as replaced glendonites. These pseudomorphs after ikaite indicate that shallow seawater at that time was near freezing. Stromatolites verify that paleoenvironments were in the photic zone and physical sedimentary structures such as hummocky cross-bedding confirm that the seafloor was repeatedly disturbed by storms. Glendonites within these low-latitude, continental shelf to coastal sedimentary deposits imply that global ocean water during much of Cryogenian time was likely very cold. Such an ocean would easily have cooled to yield widespread sea ice and, through positive feedback, growth of low-latitude continental glaciers. In this situation gas hydrates could have formed in shallow-water, cold shelf sediment, but would have been particularly sensitive to destabilization as a result of sea-level change. Co-occurrence of pisolites and glendonites in these rocks additionally implies that some ooids and pisoids might have been, unlike Phanerozoic equivalents, characteristic of cold-water sediments.

Spatial Distribution and Sedimentary Facies of the 2007 Solomon Islands Tsunami Deposits

NASA Astrophysics Data System (ADS)

Nakamura, Y.; Nishimura, Y.; Woodward, S.

2007-12-01

We conducted a field survey of the extent of damage, crustal deformation, and onshore deposits caused by 2007 Solomon Islands tsunami in Ghizo and adjacent islands in the western Solomon Islands, from 13th to 18th April, 2007. Our survey team was comprised of six Japanese and one American researcher. Three of us, the authors, mainly investigated tsunami deposits in three villages (Titiana, Suva, and Pailongge) in southern Ghizo Island. One member of our team re-investigated the deposits in June 2007. The tsunami generated sheet-like deposits of coral beach sand on the flat plain in Titiana. Beside the sea coast, the tsunami wave eroded ground surfaces and formed small scarps at 30 m from the sea. Just interior of the scarps, tsunami deposits accumulated up to 9 cm in thickness. The thickness decreased with distance from the sea and was also affected by microtopography. No sandy tsunami deposits were observed on the inland area between 170 m and 210 m from the sea. The upper boundary of inundation was recognized at about 210 m from the sea because of accumulation of driftwood and floating debris. In Suva and Pailongge, the outline of sand-sheet distribution is the same as it in Titiana. The tsunami had a maximum thickness of 10 cm and two or three sand layers are separated by thin humic sand layers. These humic layers were likely supplied from hillslopes eroded by the tsunami and transported by return-flows. These successions of deposits suggest that tsunami waves inundated at least two times. This is consistent with the number of large waves told by eyewitnesses. In the Solomon Islands, the plentiful rainfall causes erosion and resedimentation of tsunami deposits. Furthermore, the sedimentary structures will be destroyed by chemical weathering in warm and moist environment, and bioturbation by plants, animals, and human activities. The sedimentary structures had been preserved till the end of June 2007, but had already been penetrated by plant roots and sandpipes

Microbial shaping of sedimentary wrinkle structures

NASA Astrophysics Data System (ADS)

Mariotti, G.; Pruss, S. B.; Perron, J. T.; Bosak, T.

2014-10-01

Wrinkle structures on sandy bed surfaces were present in some of the earliest sedimentary environments, but are rare in modern environments. These enigmatic millimetre- to centimetre-scale ridges or pits are particularly common in sediments that harbour trace fossils and imprints of early animals, and appeared in the aftermath of some large mass extinctions. Wrinkle structures have been interpreted as possible remnants of microbial mats, but the formation mechanism and associated palaeoenvironmental and palaeoecological implications of these structures remain debated. Here we show that microbial aggregates can form wrinkle structures on a bed of bare sand in wave tank experiments. Waves with a small orbital amplitude at the bed surface do not move sand grains directly. However, they move millimetre-size, light microbial fragments and thereby produce linear sand ridges and rounded scour pits at the wavelengths observed in nature within hours. We conclude that wrinkle structures are morphological biosignatures that form at the sediment-water interface in wave-dominated environments, and not beneath microbial mats as previously thought. During early animal evolution, grazing by eukaryotic organisms may have temporarily increased the abundance of microbial fragments and thus the production of wrinkle structures.

The Zambezi sedimentary system (coastal plain - deep sea fan): a record of the vertical movements of the Mozambican margin since Cretaceous times.

NASA Astrophysics Data System (ADS)

Ponte, Jean Pierre; Robin, Cecile; Guillocheau, Francois; Baby, Guillaume; Dall'Asta, Massimo; Popescu, Speranta; Suc, Jean Pierre; Droz, Laurence; Rabineau, Marina; Moulin, Maryline

2016-04-01

The Mozambique margin is an oblique to transform margin which feeds one of the largest African turbiditic system, the Zambezi deep-sea fan (1800 km length and 400 km wide; Droz and Mougenot., AAPG Bull., 1987). The Zambezi sedimentary system is characterized by (1) a changing catchment area through time with evidences of river captures (Thomas and Shaw, J. Afr. Earth. Sci, 1988) and (2) a delta, storing more than 12 km of sediment, with no gravitary tectonics. The aim of this study is to carry out a source to sink study along the Zambezi sedimentary system and to analyse the margin evolution (vertical movements, climate change) since Early Cretaceous times. The used data are seismic lines (industrial and academic) and petroleum wells (with access to the cuttings). Our first objective was to perform a new biochronostratigraphic framework based on nannofossils, foraminifers, pollen and spores on the cuttings of three industrial wells. The second target was to recognize the different steps of the growth of the Zambezi sedimentary systems. Four main phases were identified: • Late Jurassic (?) - early Late Cretaceous: from Neocomian to Aptian times, the high of the clinoforms is getting higher, with the first occurrence of contouritic ridges during Aptian times. • Late Cretaceous - Early Paleocene: a major drop of relative sea-level occurred as a consequence of the South African Plateau uplift. The occurrence of two depocenters suggests siliciclastic supplies from the Bushveld and from the North Mozambique domain. • Early Paleocene - Eocene: growth of carbonate platforms and large contouritic ridges. • Oligocene - Present-day: birth of the modern Zambezi Delta, with quite low siliciclastic supply during Oligocene times, increasing during Miocene times. As previously expected (Droz and Mougenot) some sediments of the so-called Zambezi fans are coming from a feeder located east of the Davie Ridge. This study was founded by TOTAL and IFREMER in the frame of the

Coupling Genetics and Proteomics To Identify Aphid Proteins Associated with Vector-Specific Transmission of Polerovirus (Luteoviridae)▿

PubMed Central

Yang, Xiaolong; Thannhauser, T. W.; Burrows, Mary; Cox-Foster, Diana; Gildow, Fred E.; Gray, Stewart M.

2008-01-01

Cereal yellow dwarf virus-RPV (CYDV-RPV) is transmitted specifically by the aphids Rhopalosiphum padi and Schizaphis graminum in a circulative nonpropagative manner. The high level of vector specificity results from the vector aphids having the functional components of the receptor-mediated endocytotic pathways to allow virus to transverse the gut and salivary tissues. Studies of F2 progeny from crosses of vector and nonvector genotypes of S. graminum showed that virus transmission efficiency is a heritable trait regulated by multiple genes acting in an additive fashion and that gut- and salivary gland-associated factors are not genetically linked. Utilizing two-dimensional difference gel electrophoresis to compare the proteomes of vector and nonvector parental and F2 genotypes, four aphid proteins (S4, S8, S29, and S405) were specifically associated with the ability of S. graminum to transmit CYDV-RPV. The four proteins were coimmunoprecipitated with purified RPV, indicating that the aphid proteins are capable of binding to virus. Analysis by mass spectrometry identified S4 as a luciferase and S29 as a cyclophilin, both of which have been implicated in macromolecular transport. Proteins S8 and S405 were not identified from available databases. Study of this unique genetic system coupled with proteomic analysis indicated that these four virus-binding aphid proteins were specifically inherited and conserved in different generations of vector genotypes and suggests that they play a major role in regulating polerovirus transmission. PMID:17959668

Joint-specific DNA methylation and transcriptome signatures in rheumatoid arthritis identify distinct pathogenic processes

PubMed Central

Ai, Rizi; Hammaker, Deepa; Boyle, David L.; Morgan, Rachel; Walsh, Alice M.; Fan, Shicai; Firestein, Gary S.; Wang, Wei

2016-01-01

Stratifying patients on the basis of molecular signatures could facilitate development of therapeutics that target pathways specific to a particular disease or tissue location. Previous studies suggest that pathogenesis of rheumatoid arthritis (RA) is similar in all affected joints. Here we show that distinct DNA methylation and transcriptome signatures not only discriminate RA fibroblast-like synoviocytes (FLS) from osteoarthritis FLS, but also distinguish RA FLS isolated from knees and hips. Using genome-wide methods, we show differences between RA knee and hip FLS in the methylation of genes encoding biological pathways, such as IL-6 signalling via JAK-STAT pathway. Furthermore, differentially expressed genes are identified between knee and hip FLS using RNA-sequencing. Double-evidenced genes that are both differentially methylated and expressed include multiple HOX genes. Joint-specific DNA signatures suggest that RA disease mechanisms might vary from joint to joint, thus potentially explaining some of the diversity of drug responses in RA patients. PMID:27282753

Nd Isotopic Provenance of Sedimentary Rocks Along Margins of North America: ten Years of Study

NASA Astrophysics Data System (ADS)

Patchett, J.; Ross, G. M.

2001-12-01

Ten years of effort, principally employing Nd isotopes, have resulted in substantial advances in understanding of the movements of sedimentary material around North America from Cambrian to Cretaceous time. This synthesis has depended upon work of current and former students S. Samson, J. Gleason, N. Boghossian, C. Garzione, M. Roth, B. Canale and E. Rosenberg, as well as collaborators W. Dickinson and A. Embry, among others. Nd isotopes are particularly good at documenting movements of sedimentary material on the largest (continental) scale and over extended times. What has emerged is a picture of a largely exposed North America-Greenland craton from Neoproterozoic to Ordovician time, a partial to complete burial by detritus from Caledonian-Appalachian mountains starting in the Ordovician, a gradual exhumation during Late Paleozoic and Mesozoic time, followed by a partial burial with Cordilleran detritus during Late Jurassic to Tertiary time. One current question is the nature of the Mesozoic and Tertiary sedimentary material eroded from the North American Cordillera, and its relevance for Cordilleran orogenesis. Another current question is the extent to which Caledonian-Appalachian detritus covered the craton in Devonian-Carboniferous time, and the timing and manner of its removal during Mesozoic time. At first glance, available Nd isotopic data appear to suggest that the Canada-Greenland Shield was largely covered during most of Mesozoic time, a conclusion that would have profound effects on models of dynamic topography. However, this conclusion is also very dependent on the relationship between topography and erosion, because in certain situations a geographically-restricted cover sequence could dominate over low-relief cratonic terrain as a sediment source.

Fine-grained rutile in the Gulf of Maine: Diagenetic origin, source rocks, and sedimentary environment of deposition

USGS Publications Warehouse

Valentine, P.C.; Commeau, J.A.

1990-01-01

The Gulf of Maine, an embayment of the New England margin, is floored by shallow, glacially scoured basins that are partly filled with late Pleistocene and Holocene silt and clay containing 0.7 to 1.0 wt percent TiO2 chiefly in the form of silt-size rutile. Much of the rutile in the Gulf of Maine mud probably formed diagenetically in poorly cemented Carboniferous and Triassic coarse-grained sedimentary rocks of Nova Scotia and New Brunswick after the dissolution of titanium-rich detrital minerals (ilmenite, ilmenomagnetite). The diagenesis of rutile in coarse sedimentary rocks (especially arkose and graywacke) followed by erosion, segregation, and deposition (and including recycling of fine-grained rutile from shales) can serve as a model for predicting and prospecting for unconsolidated deposits of fine-grained TiO2. -from Authors

Specification Reformulation During Specification Validation

NASA Technical Reports Server (NTRS)

Benner, Kevin M.

1992-01-01

The goal of the ARIES Simulation Component (ASC) is to uncover behavioral errors by 'running' a specification at the earliest possible points during the specification development process. The problems to be overcome are the obvious ones the specification may be large, incomplete, underconstrained, and/or uncompilable. This paper describes how specification reformulation is used to mitigate these problems. ASC begins by decomposing validation into specific validation questions. Next, the specification is reformulated to abstract out all those features unrelated to the identified validation question thus creating a new specialized specification. ASC relies on a precise statement of the validation question and a careful application of transformations so as to preserve the essential specification semantics in the resulting specialized specification. This technique is a win if the resulting specialized specification is small enough so the user my easily handle any remaining obstacles to execution. This paper will: (1) describe what a validation question is; (2) outline analysis techniques for identifying what concepts are and are not relevant to a validation question; and (3) identify and apply transformations which remove these less relevant concepts while preserving those which are relevant.

A novel assay to identify the trafficking proteins that bind to specific vesicle populations

PubMed Central

Bentley, Marvin; Banker, Gary

2016-01-01

Here we describe a method capable of identifying interactions between candidate trafficking proteins and a defined vesicle population in intact cells. The assay involves the expression of an FKBP12-rapamycin–binding domain (FRB)–tagged candidate vesicle-binding protein that can be inducibly linked to an FKBP-tagged molecular motor. If the FRB-tagged candidate protein binds the labeled vesicles, then linking the FRB and FKBP domains recruits motors to the vesicles and causes a predictable, highly distinctive change in vesicle trafficking. We describe two versions of the assay: a general protocol for use in cells with a typical microtubule-organizing center and a specialized protocol designed to detect protein-vesicle interactions in cultured neurons. We have successfully used this assay to identify kinesins and Rabs that bind to a variety of different vesicle populations. In principle, this assay could be used to investigate interactions between any category of vesicle trafficking proteins and any vesicle population that can be specifically labeled. PMID:26621371

Beta Atomic Contacts: Identifying Critical Specific Contacts in Protein Binding Interfaces

PubMed Central

Liu, Qian; Kwoh, Chee Keong; Hoi, Steven C. H.

2013-01-01

Specific binding between proteins plays a crucial role in molecular functions and biological processes. Protein binding interfaces and their atomic contacts are typically defined by simple criteria, such as distance-based definitions that only use some threshold of spatial distance in previous studies. These definitions neglect the nearby atomic organization of contact atoms, and thus detect predominant contacts which are interrupted by other atoms. It is questionable whether such kinds of interrupted contacts are as important as other contacts in protein binding. To tackle this challenge, we propose a new definition called beta (β) atomic contacts. Our definition, founded on the β-skeletons in computational geometry, requires that there is no other atom in the contact spheres defined by two contact atoms; this sphere is similar to the van der Waals spheres of atoms. The statistical analysis on a large dataset shows that β contacts are only a small fraction of conventional distance-based contacts. To empirically quantify the importance of β contacts, we design βACV, an SVM classifier with β contacts as input, to classify homodimers from crystal packing. We found that our βACV is able to achieve the state-of-the-art classification performance superior to SVM classifiers with distance-based contacts as input. Our βACV also outperforms several existing methods when being evaluated on several datasets in previous works. The promising empirical performance suggests that β contacts can truly identify critical specific contacts in protein binding interfaces. β contacts thus provide a new model for more precise description of atomic organization in protein quaternary structures than distance-based contacts. PMID:23630569

Recirculation System for Geothermal Energy Recovery in Sedimentary Formations: Laboratory Experiments and Numerical Simulations

NASA Astrophysics Data System (ADS)

Elkhoury, J. E.; Detwiler, R. L.; Serajian, V.; Bruno, M. S.

2012-12-01

Geothermal energy resources are more widespread than previously thought and have the potential for providing a significant amount of sustainable clean energy worldwide. In particular, hot permeable sedimentary formations provide many advantages over traditional geothermal recovery and enhanced geothermal systems in low permeability crystalline formations. These include: (1) eliminating the need for hydraulic fracturing, (2) significant reduction in risk for induced seismicity, (3) reducing the need for surface wastewater disposal, (4) contributing to decreases in greenhouse gases, and (5) potential use for CO2 sequestration. Advances in horizontal drilling, completion, and production technology from the oil and gas industry can now be applied to unlock these geothermal resources. Here, we present experimental results from a laboratory scale circulation system and numerical simulations aimed at quantifying the heat transfer capacity of sedimentary rocks. Our experiments consist of fluid flow through a saturated and pressurized sedimentary disc of 23-cm diameter and 3.8-cm thickness heated along its circumference at a constant temperature. Injection and production ports are 7.6-cm apart in the center of the disc. We used DI de-aired water and mineral oil as working fluids and explored temperatures from 20 to 150 oC and flow rates from 2 to 30 ml/min. We performed experiments on sandstone samples (Castlegate and Kirby) with different porosity, permeability and thermal conductivity to evaluate the effect of hydraulic and thermal properties on the heat transfer capacity of sediments. The producing fluid temperature followed an exponential form with time scale transients between 15 and 45 min. Steady state outflow temperatures varied between 60% and 95% of the set boundary temperature, higher percentages were observed for lower temperatures and flow rates. We used the flow and heat transport simulator TOUGH2 to develop a numerical model of our laboratory setting. Given

Nature and tectonic implications of uneven sedimentary filling of the South China Sea oceanic basin

NASA Astrophysics Data System (ADS)

Yin, Shaoru; Li, Jiabiao; Ding, Weiwei; Fang, Yinxia

2017-04-01

The IODP Expedition 349 in 2014, for the first time, illustrated significant differences of sediment rate and lithology in the central South China Sea (SCS) oceanic basin. Based on seismic reflection profiles tied to IODP349 drilling data, we investigated characteristics of sedimentary filling of the whole SCS oceanic basin, and examined their implications for tectonics. Results show that sediments fill the SCS oceanic basin mainly in three depositional patterns. Firstly, during the Oligocene to middle Miocene, sediments amassed almost solely and then connected like a band parallel to the continent in a low average sediment rate (<10 m/Myr) in the northern oceanic basin. These sediments were deposited mainly in the form of submarine fans and mass transport deposits. Sediments were predominately supplied by the Red and Pearl Rivers and the Dongsha Islands. The sedimentary characteristics likely reflect the latest early Miocene end of seafloor spreading of the SCS and the first-phase rapid uplift of the Tibetan Plateau. Secondly, during the late Miocene, deposition mainly occurred in the Northwest Sub-basin and extended southeastward with a middle average sediment rate ( 30 m/Myr). Sediments were mostly transported by the Red River and Xisha Trough and deposited in the form of submarine fans. The abnormal increase of sediment rate in the Northwest Sub-basin reflects late Miocene slip reversal of the Red River Fault. Finally, since the Pliocene, sediments gradually propagated northeastward in the Southwestern Sub-basin, and accumulated rapidly in the southeastern and northeastern basin, especially in the northern Manila Trench during the Quaternary, in an average sediment rate about 60-80 m/Myr. These sediments were transported mainly by submarine canyons and settled in the form of submarine fans and canyon-overbank deposition. Sediments came from four major sources, including Taiwan, Dongsha Islands, Mekong River, and northern Palawan. The Pliocene to Quaternary

The volcano-sedimentary succession of Upper Permian in Wuli area, central Qinghai-Tibetan Plateau: Sedimentology, geochemistry and paleogeography

NASA Astrophysics Data System (ADS)

Liu, Shengqian; Jiang, Zaixing; Gao, Yi

2017-04-01

Detailed observations on cores and thin sections well documented a volcano-sedimentary succession from Well TK2, which is located in Wuli area, central Qinghai-Tibetan Plateau. The TK2 volcano-sedimentary succession reflects an active sedimentary-tectonic setting in the north margin of North Qiangtang-Chamdo terrane in the late Permian epoch. Based on the observation and recognition on lithology and mineralogy, the components of TK2 succession are mainly volcanic and volcaniclastic rocks and four main lithofacies are recognized, including massive volcanic lithofacies (LF1), pyroclastic tuff lithofacies (LF2), tuffaceous sandstone lithofacies (LF3) and mudstone lithofacies (LF4). LF1 is characterized by felsic components, massive structure and porphyrotopic structure with local flow structure, which indicates submarine intrusive domes or extrusion-fed lavas that formed by magma ascents via faults or dykes. Meanwhile, its eruption style may reflect a relative high pressure compensation level (PCL) that mainly determined by water depth, which implies a deep-water environment. LF2 is composed of volcanic lapilli or ash and featured with massive structure, parallel bedding and various deformed laminations including convolve structure, slide deformation, ball-and-pillow structure, etc.. LF2 indicates the sedimentation of initial or reworked explosive products not far away from volcano centers, reflecting the proximal accumulation of volcano eruption-fed clasts or their resedimentation as debris flows. In addition, the submarine volcano eruptions may induced earthquakes that facilitate the resedimentation of unconsolidated sediments. LF3 contains abundant pyroclastic components and is commonly massive with rip-up mudstone clasts or usually interbedded with LF4. In addition, typical flute casts, scour structures and graded beddings in thin-interbedded layers of sandstone and mudstone are commonly observed, which also represents the sedimentation of debris flows or

Genome of the Netherlands population-specific imputations identify an ABCA6 variant associated with cholesterol levels

PubMed Central

van Leeuwen, Elisabeth M.; Karssen, Lennart C.; Deelen, Joris; Isaacs, Aaron; Medina-Gomez, Carolina; Mbarek, Hamdi; Kanterakis, Alexandros; Trompet, Stella; Postmus, Iris; Verweij, Niek; van Enckevort, David J.; Huffman, Jennifer E.; White, Charles C.; Feitosa, Mary F.; Bartz, Traci M.; Manichaikul, Ani; Joshi, Peter K.; Peloso, Gina M.; Deelen, Patrick; van Dijk, Freerk; Willemsen, Gonneke; de Geus, Eco J.; Milaneschi, Yuri; Penninx, Brenda W.J.H.; Francioli, Laurent C.; Menelaou, Androniki; Pulit, Sara L.; Rivadeneira, Fernando; Hofman, Albert; Oostra, Ben A.; Franco, Oscar H.; Leach, Irene Mateo; Beekman, Marian; de Craen, Anton J.M.; Uh, Hae-Won; Trochet, Holly; Hocking, Lynne J.; Porteous, David J.; Sattar, Naveed; Packard, Chris J.; Buckley, Brendan M.; Brody, Jennifer A.; Bis, Joshua C.; Rotter, Jerome I.; Mychaleckyj, Josyf C.; Campbell, Harry; Duan, Qing; Lange, Leslie A.; Wilson, James F.; Hayward, Caroline; Polasek, Ozren; Vitart, Veronique; Rudan, Igor; Wright, Alan F.; Rich, Stephen S.; Psaty, Bruce M.; Borecki, Ingrid B.; Kearney, Patricia M.; Stott, David J.; Adrienne Cupples, L.; Neerincx, Pieter B.T.; Elbers, Clara C.; Francesco Palamara, Pier; Pe'er, Itsik; Abdellaoui, Abdel; Kloosterman, Wigard P.; van Oven, Mannis; Vermaat, Martijn; Li, Mingkun; Laros, Jeroen F.J.; Stoneking, Mark; de Knijff, Peter; Kayser, Manfred; Veldink, Jan H.; van den Berg, Leonard H.; Byelas, Heorhiy; den Dunnen, Johan T.; Dijkstra, Martijn; Amin, Najaf; Joeri van der Velde, K.; van Setten, Jessica; Kattenberg, Mathijs; van Schaik, Barbera D.C.; Bot, Jan; Nijman, Isaäc J.; Mei, Hailiang; Koval, Vyacheslav; Ye, Kai; Lameijer, Eric-Wubbo; Moed, Matthijs H.; Hehir-Kwa, Jayne Y.; Handsaker, Robert E.; Sunyaev, Shamil R.; Sohail, Mashaal; Hormozdiari, Fereydoun; Marschall, Tobias; Schönhuth, Alexander; Guryev, Victor; Suchiman, H. Eka D.; Wolffenbuttel, Bruce H.; Platteel, Mathieu; Pitts, Steven J.; Potluri, Shobha; Cox, David R.; Li, Qibin; Li, Yingrui; Du, Yuanping; Chen, Ruoyan; Cao, Hongzhi; Li, Ning; Cao, Sujie; Wang, Jun; Bovenberg, Jasper A.; Jukema, J. Wouter; van der Harst, Pim; Sijbrands, Eric J.; Hottenga, Jouke-Jan; Uitterlinden, Andre G.; Swertz, Morris A.; van Ommen, Gert-Jan B.; de Bakker, Paul I.W.; Eline Slagboom, P.; Boomsma, Dorret I.; Wijmenga, Cisca; van Duijn, Cornelia M.

2015-01-01

Variants associated with blood lipid levels may be population-specific. To identify low-frequency variants associated with this phenotype, population-specific reference panels may be used. Here we impute nine large Dutch biobanks (~35,000 samples) with the population-specific reference panel created by the Genome of the Netherlands Project and perform association testing with blood lipid levels. We report the discovery of five novel associations at four loci (P value <6.61 × 10−4), including a rare missense variant in ABCA6 (rs77542162, p.Cys1359Arg, frequency 0.034), which is predicted to be deleterious. The frequency of this ABCA6 variant is 3.65-fold increased in the Dutch and its effect (βLDL-C=0.135, βTC=0.140) is estimated to be very similar to those observed for single variants in well-known lipid genes, such as LDLR. PMID:25751400

LC-QTOF-MS identification of porcine-specific peptide in heat treated pork identifies candidate markers for meat species determination.

PubMed

Sarah, S A; Faradalila, W N; Salwani, M S; Amin, I; Karsani, S A; Sazili, A Q

2016-05-15

The purpose of this study was to identify porcine-specific peptide markers from thermally processed meat that could differentiate pork from beef, chevon and chicken meat. In the initial stage, markers from tryptic digested protein of chilled, boiled and autoclaved pork were identified using LC-QTOF-MS. An MRM method was then established for verification. A thorough investigation of LC-QTOF-MS data showed that only seven porcine-specific peptides were consistently detected. Among these peptides, two were derived from lactate dehydrogenase, one from creatine kinase, and four from serum albumin protein. However, MRM could only detect four peptides (EVTEFAK, LVVITAGAR, FVIER and TVLGNFAAFVQK) that were consistently present in pork samples. In conclusion, meat species determination through a tandem mass spectrometry platform shows high potential in providing scientifically valid and reliable results even at peptide level. Besides, the specificity and selectivity offered by the proteomics approach also provide a robust platform for Halal authentication. Copyright © 2015 Elsevier Ltd. All rights reserved.

Modeling the Sedimentary Infill of Lakes in the East African Rift: A Case Study of Multiple versus Single Rift Basin Segments

NASA Astrophysics Data System (ADS)

Zhang, C.; Scholz, C. A.

2016-12-01

The sedimentary basins in the East African Rift are considered excellent modern examples for investigating sedimentary infilling and evolution of extensional systems. Some lakes in the western branch of the rift have formed within single-segment systems, and include Lake Albert and Lake Edward. The largest and oldest lakes developed within multi-segment systems, and these include Lake Tanganyika and Lake Malawi. This research aims to explore processes of erosion and sedimentary infilling of the catchment area in single-segment rift (SSR) and multi-segment rift (MSR) systems. We consider different conditions of regional precipitation and evaporation, and assess the resulting facies architecture through forward modeling, using state-of-the-art commercial basin modeling software. Dionisos is a three-dimensional numerical stratigraphic forward modeling software program, which simulates basin-scale sediment transport based on empirical water- and gravity-driven diffusion equations. It was classically used to quantify the sedimentary architecture and basin infilling of both marine siliciclastic and carbonate environments. However, we apply this approach to continental rift basin environments. In this research, two scenarios are developed, one for a MSR and the other for a SSR. The modeled systems simulate the ratio of drainage area and lake surface area observed in modern Lake Tanganyika and Lake Albert, which are examples of MSRs and SSRs, respectively. The main parameters, such as maximum subsidence rate, water- and gravity-driven diffusion coefficients, rainfall, and evaporation, are approximated using these real-world examples. The results of 5 million year model runs with 50,000 year time steps show that MSRs are characterized by a deep water lake with relatively modest sediment accumulation, while the SSRs are characterized by a nearly overfilled lake with shallow water depths and thick sediment accumulation. The preliminary modeling results conform to the features

Inclination shallowing in Eocene Linzizong sedimentary rocks from Southern Tibet: correction, possible causes and implications for reconstructing the India-Asia collision

NASA Astrophysics Data System (ADS)

Huang, Wentao; Dupont-Nivet, Guillaume; Lippert, Peter C.; van Hinsbergen, Douwe J. J.; Hallot, Erwan

2013-09-01

A systematic bias towards low palaeomagnetic inclination recorded in clastic sediments, that is, inclination shallowing, has been recognized and studied for decades. Identification, understanding and correction of this inclination shallowing are critical for palaeogeographic reconstructions, particularly those used in climate models and to date collisional events in convergent orogenic systems, such as those surrounding the Neotethys. Here we report palaeomagnetic inclinations from the sedimentary Eocene upper Linzizong Group of Southern Tibet that are ˜20° lower than conformable underlying volcanic units. At face value, the palaeomagnetic results from these sedimentary rocks suggest the southern margin of Asia was located ˜10°N, which is inconsistent with recent reviews of the palaeolatitude of Southern Tibet. We apply two different correction methods to estimate the magnitude of inclination shallowing independently from the volcanics. The mean inclination is corrected from 20.5° to 40.0° within 95 per cent confidence limits between 33.1° and 49.5° by the elongation/inclination (E/I) correction method; an anisotropy-based inclination correction method steepens the mean inclination to 41.3 ± 3.3° after a curve fitting- determined particle anisotropy of 1.39 is applied. These corrected inclinations are statistically indistinguishable from the well-determined 40.3 ± 4.5º mean inclination of the underlying volcanic rocks that provides an independent check on the validity of these correction methods. Our results show that inclination shallowing in sedimentary rocks can be corrected. Careful inspection of stratigraphic variations of rock magnetic properties and remanence anisotropy suggests shallowing was caused mainly by a combination of syn- and post-depositional processes such as particle imbrication and sedimentary compaction that vary in importance throughout the section. Palaeolatitudes calculated from palaeomagnetic directions from Eocene sedimentary

An Investigation to Validate the Grammar and Phonology Screening (GAPS) Test to Identify Children with Specific Language Impairment

PubMed Central

van der Lely, Heather K. J.; Payne, Elisabeth; McClelland, Alastair

2011-01-01

Background The extraordinarily high incidence of grammatical language impairments in developmental disorders suggests that this uniquely human cognitive function is “fragile”. Yet our understanding of the neurobiology of grammatical impairments is limited. Furthermore, there is no “gold-standard” to identify grammatical impairments and routine screening is not undertaken. An accurate screening test to identify grammatical abilities would serve the research, health and education communities, further our understanding of developmental disorders, and identify children who need remediation, many of whom are currently un-diagnosed. A potential realistic screening tool that could be widely administered is the Grammar and Phonology Screening (GAPS) test – a 10 minute test that can be administered by professionals and non-professionals alike. Here we provide a further step in evaluating the validity and accuracy (sensitivity and specificity) of the GAPS test in identifying children who have Specific Language Impairment (SLI). Methods and Findings We tested three groups of children; two groups aged 3;6–6:6, a typically developing (n = 30) group, and a group diagnosed with SLI: (n = 11) (Young (Y)-SLI), and a further group aged 6;9–8;11 with SLI (Older (O)-SLI) (n = 10) who were above the test age norms. We employed a battery of language assessments including the GAPS test to assess the children's language abilities. For Y-SLI children, analyses revealed a sensitivity and specificity at the 5th and 10th percentile of 1.00 and 0.98, respectively, and for O-SLI children at the 10th and 15th percentile .83 and .90, respectively. Conclusions The findings reveal that the GAPS is highly accurate in identifying impaired vs. non-impaired children up to 6;8 years, and has moderate-to-high accuracy up to 9 years. The results indicate that GAPS is a realistic tool for the early identification of grammatical abilities and impairment in young children. A larger

Geothermal energy from deep sedimentary basins: The Valley of Mexico (Central Mexico)

NASA Astrophysics Data System (ADS)

Lenhardt, Nils; Götz, Annette E.

2015-04-01

The geothermal potential of the Valley of Mexico has not been addressed in the past, although volcaniclastic settings in other parts of the world contain promising target reservoir formations. A first assessment of the geothermal potential of the Valley of Mexico is based on thermophysical data gained from outcrop analogues, covering all lithofacies types, and evaluation of groundwater temperature and heat flow values from literature. Furthermore, the volumetric approach of Muffler and Cataldi (1978) leads to a first estimation of ca. 4000 TWh (14.4 EJ) of power generation from Neogene volcanic rocks within the Valley of Mexico. Comparison with data from other sedimentary basins where deep geothermal reservoirs are identified shows the high potential of the Valley of Mexico for future geothermal reservoir utilization. The mainly low permeable lithotypes may be operated as stimulated systems, depending on the fracture porosity in the deeper subsurface. In some areas also auto-convective thermal water circulation might be expected and direct heat use without artificial stimulation becomes reasonable. Thermophysical properties of tuffs and siliciclastic rocks qualify them as promising target horizons (Lenhardt and Götz, 2015). The here presented data serve to identify exploration areas and are valuable attributes for reservoir modelling, contributing to (1) a reliable reservoir prognosis, (2) the decision of potential reservoir stimulation, and (3) the planning of long-term efficient reservoir utilization. References Lenhardt, N., Götz, A.E., 2015. Geothermal reservoir potential of volcaniclastic settings: The Valley of Mexico, Central Mexico. Renewable Energy. [in press] Muffler, P., Cataldi, R., 1978. Methods for regional assessment of geothermal resources. Geothermics, 7, 53-89.

Measuring the Electronic Properties of DNA-Specific Schottky Diodes Towards Detecting and Identifying Basidiomycetes DNA

PubMed Central

Periasamy, Vengadesh; Rizan, Nastaran; Al-Ta’ii, Hassan Maktuff Jaber; Tan, Yee Shin; Tajuddin, Hairul Annuar; Iwamoto, Mitsumasa

2016-01-01

The discovery of semiconducting behavior of deoxyribonucleic acid (DNA) has resulted in a large number of literatures in the study of DNA electronics. Sequence-specific electronic response provides a platform towards understanding charge transfer mechanism and therefore the electronic properties of DNA. It is possible to utilize these characteristic properties to identify/detect DNA. In this current work, we demonstrate a novel method of DNA-based identification of basidiomycetes using current-voltage (I-V) profiles obtained from DNA-specific Schottky barrier diodes. Electronic properties such as ideality factor, barrier height, shunt resistance, series resistance, turn-on voltage, knee-voltage, breakdown voltage and breakdown current were calculated and used to quantify the identification process as compared to morphological and molecular characterization techniques. The use of these techniques is necessary in order to study biodiversity, but sometimes it can be misleading and unreliable and is not sufficiently useful for the identification of fungi genera. Many of these methods have failed when it comes to identification of closely related species of certain genus like Pleurotus. Our electronics profiles, both in the negative and positive bias regions were however found to be highly characteristic according to the base-pair sequences. We believe that this simple, low-cost and practical method could be useful towards identifying and detecting DNA in biotechnology and pathology. PMID:27435636

Measuring the Electronic Properties of DNA-Specific Schottky Diodes Towards Detecting and Identifying Basidiomycetes DNA

NASA Astrophysics Data System (ADS)

Periasamy, Vengadesh; Rizan, Nastaran; Al-Ta'Ii, Hassan Maktuff Jaber; Tan, Yee Shin; Tajuddin, Hairul Annuar; Iwamoto, Mitsumasa

2016-07-01

The discovery of semiconducting behavior of deoxyribonucleic acid (DNA) has resulted in a large number of literatures in the study of DNA electronics. Sequence-specific electronic response provides a platform towards understanding charge transfer mechanism and therefore the electronic properties of DNA. It is possible to utilize these characteristic properties to identify/detect DNA. In this current work, we demonstrate a novel method of DNA-based identification of basidiomycetes using current-voltage (I-V) profiles obtained from DNA-specific Schottky barrier diodes. Electronic properties such as ideality factor, barrier height, shunt resistance, series resistance, turn-on voltage, knee-voltage, breakdown voltage and breakdown current were calculated and used to quantify the identification process as compared to morphological and molecular characterization techniques. The use of these techniques is necessary in order to study biodiversity, but sometimes it can be misleading and unreliable and is not sufficiently useful for the identification of fungi genera. Many of these methods have failed when it comes to identification of closely related species of certain genus like Pleurotus. Our electronics profiles, both in the negative and positive bias regions were however found to be highly characteristic according to the base-pair sequences. We believe that this simple, low-cost and practical method could be useful towards identifying and detecting DNA in biotechnology and pathology.

Supercritical bedforms and sedimentary structures from field and core studies, Middle Eocene deep-marine base-of-slope environment, Ainsa Basin, Spanish Pyrenees

NASA Astrophysics Data System (ADS)

Cornard, Pauline; Pickering, Kevin

2017-04-01

In recent years, many researchers have focussed on supercritical- and subcritical-flow deposits using flume-tank experiments (e.g., Cartigny el al., 2011; Postma et al., 2014; Postma and Cartigny, 2014), or from direct observations on presently active deep-water systems (e.g., Hughes et al., 2012). Using outcrop and core examples from a base-of-slope environment in the Middle Eocene Ainsa Basin, Spanish Pyrenees, and with published experimental work, a range of deposits are interpreted as upper-flow regime sedimentary structures. This contribution focusses on the interpretation of several supercritical bedforms (antidunes and chutes-and-pools) observed on the field and upper-flow regime sedimentary structures recognized in cores. The spatial distribution of supercritical-flow deposits obtained from an analysis of field outcrops and core sedimentary logs are evaluated in relation to the depositional environment (channel axis, off-axis, margin and interfan). The frequency distributions of the bed thicknesses are also analysed in relation to supercritical versus subcritical bed-thickness distributions.

The Totumo mud volcano and its near-shore marine sedimentological setting (North Colombia) - From sedimentary volcanism to epithermal mineralization

NASA Astrophysics Data System (ADS)

Dill, H. G.; Kaufhold, S.

2018-04-01

The Holocene mud volcano exposed at Totumo (younger than 4150 ± 50 yr BP) lines up together with some other landforms of its kind along the Caribbean Coast in northern Colombia. It currently vents a mud of the silicate-phosphate-bearing sulfur-sodium chloride type. The mud volcanoes evolved in an active continental margin setting of the South American Cordillera with high seismicity and affected by pervasive neotectonic structural disturbances. During the Neogene and Quaternary linear terrigenous shoreline sediments alternating with delta deposits evolved on this mobile crustal segment between the Andes and ancient Precambrian cratons. Meso- to microtidal sedimentary settings during transgression and progradation created meta- to instable sedimentary and petrophysical conditions (e.g. overpressure and gas-bearing bubble sands), favorable for the formation of mud volcanoes, whose lithofacies is subdivided into (1) footwall facies (detritus from metabasic, -pelitic source rocks), (2) mud volcano plus lateral facies (material from deep-seated hydrothermal sources, hydrocarbon plays, and brine reflux from the sea), (3) hanging wall facies, sand characterized by a strong longshore drift. The sedimentary volcanism in the area is characterized by different temperatures of formation: (1) pre-stage (<100 °C) and (2) recent stage (≈25 °C). Heavy (pyroxene, amphibole, epidote-clinozoisite, Fe-Ti silicates and oxides, garnet, alumosilicates, tourmaline, zircon, barite, Fe sulfides and -sulfates), light (Ca sulfates, calcite, quartz, feldspar) and clay minerals (kaolinite, mica, pyrophyllite, chlorite, vermiculite) are efficient tools to determine the source of mud, to subdivide the mud volcano system as to its facies and describe its physical-chemical regime as to the temperature of formation, pH and Eh values. The mud volcano system of Totumo bridges the gap between sedimentary "volcanism" and epithermal hot spring deposits of intermediate to high sulfidation and forms a

Thermal history determined by fission-track dating for three sedimentary basins in California and Wyoming

USGS Publications Warehouse

Naeser, Nancy D.

1984-01-01

The use of fission-tracks is demonstrated in studies of time-temperature relationships in three sedimentary basins in the western United States; in the Tejon Oil Field area of the southern San Joaquin Valley, California; in the northeastern Green River basin, Wyoming, and in drill holes in the southern Powder River Basin, Wyoming.

Sensitivity and Specificity of Cetuximab-IRDye800CW to Identify Regional Metastatic Disease in Head and Neck Cancer.

PubMed

Rosenthal, Eben L; Moore, Lindsay S; Tipirneni, Kiranya; de Boer, Esther; Stevens, Todd M; Hartman, Yolanda E; Carroll, William R; Zinn, Kurt R; Warram, Jason M

2017-08-15

Purpose: Comprehensive cervical lymphadenectomy can be associated with significant morbidity and poor quality of life. This study evaluated the sensitivity and specificity of cetuximab-IRDye800CW to identify metastatic disease in patients with head and neck cancer. Experimental Design: Consenting patients scheduled for curative resection were enrolled in a clinical trial to evaluate the safety and specificity of cetuximab-IRDye800CW. Patients ( n = 12) received escalating doses of the study drug. Where indicated, cervical lymphadenectomy accompanied primary tumor resection, which occurred 3 to 7 days following intravenous infusion of cetuximab-IRDye800CW. All 471 dissected lymph nodes were imaged with a closed-field, near-infrared imaging device during gross processing of the fresh specimens. Intraoperative imaging of exposed neck levels was performed with an open-field fluorescence imaging device. Blinded assessments of the fluorescence data were compared to histopathology to calculate sensitivity, specificity, negative predictive value (NPV), and positive predictive value (PPV). Results: Of the 35 nodes diagnosed pathologically positive, 34 were correctly identified with fluorescence imaging, yielding a sensitivity of 97.2%. Of the 435 pathologically negative nodes, 401 were correctly assessed using fluorescence imaging, yielding a specificity of 92.7%. The NPV was determined to be 99.7%, and the PPV was 50.7%. When 37 fluorescently false-positive nodes were sectioned deeper (1 mm) into their respective blocks, metastatic cancer was found in 8.1% of the recut nodal specimens, which altered staging in two of those cases. Conclusions: Fluorescence imaging of lymph nodes after systemic cetuximab-IRDye800CW administration demonstrated high sensitivity and was capable of identifying additional positive nodes on deep sectioning. Clin Cancer Res; 23(16); 4744-52. ©2017 AACR . ©2017 American Association for Cancer Research.

The Sedimentary Architecture of the Hatton Basin from New 2D Seismic Reflection and Gravity Data

NASA Astrophysics Data System (ADS)

Bérdi, L.; Prada, M.; O'Reilly, B.; Haughton, P.; Shannon, P.; Martínez-Loriente, S.

2017-12-01

The Hatton Basin is located at the western European Atlantic Margin, approximately 600 km west of Scotland and Ireland. It is bounded by the Rockall Bank to the east and by the Hatton High to the west. Little is known about its structure and evolution within the context of the North Atlantic opening. Here we present a preliminary interpretation of the large-scale sedimentary structure of the Hatton basin from new 2D regional long-streamer seismic reflection data and DSDP information. Gravity data and previous knowledge on the crustal structure of the basin are used to investigate its formation processes.First interpretations of the seismic data suggest the presence of three megasequences referred to as Ha (Early Pliocene to Holocene), Hb (Late Eocene to Late Miocene) and Hc (Paleocene to middle Eocene), which are bounded by regional unconformities C10 (intra-Early Pliocene), C30 (intra-Late Eocene) and C40 (base Cenozoic) respectively. The C20 (intra-Early Miocene) surface is absent in the basin but is locally identified to the south of the study area. The mapped regional reflectors are recognized throughout the European North Atlantic.Below the Cenozoic succession, the presence of Mesozoic and/or older rocks in the basin is proposed based on the seismic character of the reflectors and the apparent rotated fault blocks. In the lowest Cenozoic megasequence (Hc), a prograding sedimentary wedge system was identified at the basin margins that implies a relative sea level fall during this period. In Late Paleocene‒Early Eocene times, the basin was affected by extensive magmatism that resulted in the emplacement of volcanic intrusives and extrusives of basaltic origin. The deposition of megasequence Hb was controlled by strong bottom current activity as a consequence of rapid subsidence and deep marine conditions. The transition from sequence Hb to Ha is marked by the C10 unconformity, which records the late Cenozoic uplift and erosion of Ireland and Britain

Benthic iron cycling in a high-oxygen environment: Implications for interpreting the Archean sedimentary iron isotope record.

PubMed

McCoy, V E; Asael, D; Planavsky, N

2017-09-01

The most notable trend in the sedimentary iron isotope record is a shift at the end of the Archean from highly variable δ 56 Fe values with large negative excursions to less variable δ 56 Fe values with more limited negative values. The mechanistic explanation behind this trend has been extensively debated, with two main competing hypotheses: (i) a shift in marine redox conditions and the transition to quantitative iron oxidation; and (ii) a decrease in the signature of microbial iron reduction in the sedimentary record because of increased bacterial sulfate reduction (BSR). Here, we provide new insights into this debate and attempt to assess these two hypotheses by analyzing the iron isotope composition of siderite concretions from the Carboniferous Mazon Creek fossil site. These concretions precipitated in an environment with water column oxygenation, extensive sediment pile dissimilatory iron reduction (DIR) but limited bacterial sulfate reduction (BSR). Most of the concretions have slightly positive iron isotope values, with a mean of 0.15‰ and limited iron isotope variability compared to the Archean sedimentary record. This limited variability in an environment with high DIR and low BSR suggests that these conditions alone are insufficient to explain Archean iron isotope compositions. Therefore, these results support the idea that the unusually variable and negative iron isotope values in the Archean are due to dissimilatory iron reduction (DIR) coupled with extensive water column iron cycling. © 2017 John Wiley & Sons Ltd.

Miocene Antarctic ice dynamics in the Ross Embayment (Western Ross Sea, Antarctica): Insights from provenance analyses of sedimentary clasts in the AND-2A drill core

NASA Astrophysics Data System (ADS)

Cornamusini, Gianluca; Talarico, Franco M.

2016-11-01

A detailed study of gravel-size sedimentary clasts in the ANDRILL-2A (AND-2A) drill core reveals distinct changes in provenance and allows reconstructions to be produced of the paleo ice flow in the McMurdo Sound region (Ross Sea) from the Early Miocene to the Holocene. The sedimentary clasts in AND-2A are divided into seven distinct petrofacies. A comparison of these with potential source rocks from the Transantarctic Mountains and the coastal Southern Victoria Land suggests that the majority of the sedimentary clasts were derived from formations within the Devonian-Triassic Beacon Supergroup. The siliciclastic-carbonate petrofacies are similar to the fossiliferous erratics found in the Quaternary Moraine in the southern McMurdo Sound and were probably sourced from Eocene strata that are currently hidden beneath the Ross Ice Shelf. Intraformational clasts were almost certainly reworked from diamictite and mudstone sequences that were originally deposited proximal to the drill site. The distribution of sedimentary gravel clasts in AND-2A suggests that sedimentary sequences in the drill core were deposited under two main glacial scenarios: 1) a highly dynamic ice sheet that did not extend beyond the coastal margin and produced abundant debris-rich icebergs from outlet glaciers in the central Transantarctic Mountains and South Victoria Land; 2) and an ice sheet that extended well beyond the coastal margin and periodically advanced across the Ross Embayment. Glacial scenario 1 dominated the early to mid-Miocene (between ca. 1000 and 225 mbsf in AND-2A) and scenario 2 the early Miocene (between ca. 1138 and 1000 mbsf) and late Neogene to Holocene (above ca. 225 mbsf). This study augments previous research on the clast provenance and highlights the added value that sedimentary clasts offer in terms of reconstructing past glacial conditions from Antarctic drill core records.

Fjordic Environments of Scotland: A National Inventory of Sedimentary Blue Carbon.

NASA Astrophysics Data System (ADS)

Smeaton, Craig; Austin, William; Davies, Althea; Baltzer, Agnes; Howe, John

2016-04-01

Coastal sediments potentially hold a significant store of carbon; yet there has been no comprehensive attempt to quantitatively determine the quantity of carbon in these stores. Using Scottish sea lochs (fjords) we have established a Holocene record of the quantity and type of carbon held within the sediment store of a typical Scottish sea loch. Through the use of both seismic geophysics and geochemical measurements we have developed a methodology to make first-order estimations of the carbon held with the sediment of sea lochs. This methodology was applied to four sea lochs with differing geographical locations, catchments, freshwater inputs to produce the first sedimentary Blue Carbon estimates. The resulting carbon inventories show clearly that these sea lochs hold a significant store of sedimentary carbon; for example, Loch Sunart in Argyll stores an estimated 26.88 ± 0.52 Mt C. A direct comparison of the organic carbon content per unit area suggest sea lochs have a greater OC storage potential between than Scottish peatlands on long, Holocene timescales (Loch Sunart = 0.234 Mt OC km-2; Peatland = 0.093 Mt OC km-2 (Chapman et al. 2009). The carbon values calculated for these sea lochs have been used to estimate the total carbon held within Scotland's 110 sea lochs and these up-scaled estimations are for the first time, reviewed in the context of Scotland's known terrestrial stores. Chapman, S. J., Bell, J., Donnelly, D. and Lilly, A.: Carbon stocks in Scottish peatlands, Soil Use Manag., 25(2), 105-112, doi:10.1111/j.1475-2743.2009.00219.x, 2009.

Mars sedimentary rock erosion rates constrained using crater counts, with applications to organic-matter preservation and to the global dust cycle

NASA Astrophysics Data System (ADS)

Kite, Edwin S.; Mayer, David P.

2017-04-01

Small-crater counts on Mars light-toned sedimentary rock are often inconsistent with any isochron; these data are usually plotted then ignored. We show (using an 18-HiRISE-image, > 104-crater dataset) that these non-isochron crater counts are often well-fit by a model where crater production is balanced by crater obliteration via steady exhumation. For these regions, we fit erosion rates. We infer that Mars light-toned sedimentary rocks typically erode at ∼102 nm/yr, when averaged over 10 km2 scales and 107-108 yr timescales. Crater-based erosion-rate determination is consistent with independent techniques, but can be applied to nearly all light-toned sedimentary rocks on Mars. Erosion is swift enough that radiolysis cannot destroy complex organic matter at some locations (e.g. paleolake deposits at SW Melas), but radiolysis is a severe problem at other locations (e.g. Oxia Planum). The data suggest that the relief of the Valles Marineris mounds is currently being reduced by wind erosion, and that dust production on Mars < 3 Gya greatly exceeds the modern reservoir of mobile dust.

Elemental Characteristics of Australian Sedimentary Opals and their Implications for Opal Formation and Gemstone Fingerprinting

NASA Astrophysics Data System (ADS)

Dutkiewicz, A.; Landgrebe, T. C.; Rey, P. F.

2011-12-01

Opal consists of amorphous SiO2.nH2O comprising a network of silica spheres, which in precious opal are of similar size and form an ordered network allowing light to diffract into an array of colors. Common opal, which is often associated with precious opal, lacks this play of color as it is composed of silica spheres of variable sizes. Australia supplies over 95% of the world's precious opal. The opal is almost exclusively located within Cretaceous sedimentary rocks of the Great Artesian Basin, which experienced a major phase of uplift in the Late Cretaceous with subsequent erosion removing a package of sedimentary rock up to 3 km in thickness. Intense weathering resulted in extensive silicification at relatively shallow levels within the Tertiary regolith. However, despite a billion dollar industry and a well-constrained geological history of the basin, the formation of sedimentary opal and its uniqueness to the Australian continent are still very poorly understood. In this study we have used laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) on precious and common opal from key opal mining areas in order to constrain the possible sources of silica fluids involved in opal genesis and to assess whether any major or trace elements could be used to determine the provenance of opal with respect to a particular mining area. A total of 123 spots, each comprising 59 elements, including rare earth elements were analyzed. Globally, volcanic and sedimentary opals can be distinguished on the basis of Ba and Ca concentrations. Although the opals from the Great Artesian Basin are all sedimentary, some show Ba concentrations consistent with volcanic opals suggesting that silica fluids from which they formed were derived from a volcanic province. The most likely source is the Cretaceous volcanic-plutonic province of central Queensland, which supplied vast amounts of volcanogenic material into the Great Artesian Basin. The weathering of feldspars from the

Parallel RNAi screens across different cell lines identify generic and cell type-specific regulators of actin organization and cell morphology.

PubMed

Liu, Tao; Sims, David; Baum, Buzz

2009-01-01

In recent years RNAi screening has proven a powerful tool for dissecting gene functions in animal cells in culture. However, to date, most RNAi screens have been performed in a single cell line, and results then extrapolated across cell types and systems. Here, to dissect generic and cell type-specific mechanisms underlying cell morphology, we have performed identical kinome RNAi screens in six different Drosophila cell lines, derived from two distinct tissues of origin. This analysis identified a core set of kinases required for normal cell morphology in all lines tested, together with a number of kinases with cell type-specific functions. Most significantly, the screen identified a role for minibrain (mnb/DYRK1A), a kinase associated with Down's syndrome, in the regulation of actin-based protrusions in CNS-derived cell lines. This cell type-specific requirement was not due to the peculiarities in the morphology of CNS-derived cells and could not be attributed to differences in mnb expression. Instead, it likely reflects differences in gene expression that constitute the cell type-specific functional context in which mnb/DYRK1A acts. Using parallel RNAi screens and gene expression analyses across cell types we have identified generic and cell type-specific regulators of cell morphology, which include mnb/DYRK1A in the regulation of protrusion morphology in CNS-derived cell lines. This analysis reveals the importance of using different cell types to gain a thorough understanding of gene function across the genome and, in the case of kinases, the difficulties of using the differential gene expression to predict function.

Alteration of immature sedimentary rocks on Earth and Mars. Recording Aqueous and Surface-atmosphere Processes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cannon, Kenneth M.; Mustard, John F.; Salvatore, Mark R.

The rock alteration and rind formation in analog environments like Antarctica may provide clues to rock alteration and therefore paleoclimates on Mars. Clastic sedimentary rocks derived from basaltic sources have been studied in situ by martian rovers and are likely abundant on the surface of Mars. Moreover, how such rock types undergo alteration when exposed to different environmental conditions is poorly understood compared with alteration of intact basaltic flows. Here we characterize alteration in the chemically immature Carapace Sandstone from Antarctica, a terrestrial analog for martian sedimentary rocks. We employ a variety of measurements similar to those used on previousmore » and current Mars missions. Laboratory techniques included bulk chemistry, powder X-ray diffraction (XRD), hyperspectral imaging and X-ray absorption spectroscopy. Through these methods we find that primary basaltic material in the Carapace Sandstone is pervasively altered to hydrated clay minerals and palagonite as a result of water–rock interaction. A thick orange rind is forming in current Antarctic conditions, superimposing this previous aqueous alteration signature. The rind exhibits a higher reflectance at visible-near infrared wavelengths than the rock interior, with an enhanced ferric absorption edge likely due to an increase in Fe 3+ of existing phases or the formation of minor iron (oxy)hydroxides. This alteration sequence in the Carapace Sandstone results from decreased water–rock interaction over time, and weathering in a cold, dry environment, mimicking a similar transition early in martian history. This transition may be recorded in sedimentary rocks on Mars through a similar superimposition mechanism, capturing past climate changes at the hand sample scale. These results also suggest that basalt-derived sediments could have sourced significant volumes of hydrated minerals on early Mars due to their greater permeability compared with intact igneous rocks.« less

Consumption and diffusion of dissolved oxygen in sedimentary rocks.

PubMed

Manaka, M; Takeda, M

2016-10-01

Fe(II)-bearing minerals (e.g., biotite, chlorite, and pyrite) are a promising reducing agent for the consumption of atmospheric oxygen in repositories for the geological disposal of high-level radioactive waste. To estimate effective diffusion coefficients (D e , in m 2 s -1 ) for dissolved oxygen (DO) and the reaction rates for the oxidation of Fe(II)-bearing minerals in a repository environment, we conducted diffusion-chemical reaction experiments using intact rock samples of Mizunami sedimentary rock. In addition, we conducted batch experiments on the oxidation of crushed sedimentary rock by DO in a closed system. From the results of the diffusion-chemical reaction experiments, we estimated the values of D e for DO to lie within the range 2.69×10 -11

Critical elements in sediment-hosted deposits (clastic-dominated Zn-Pb-Ag, Mississippi Valley-type Zn-Pb, sedimentary rock-hosted Stratiform Cu, and carbonate-hosted Polymetallic Deposits): A review: Chapter 12

USGS Publications Warehouse

Marsh, Erin; Hitzman, Murray W.; Leach, David L.

2016-01-01

Some sediment-hosted base metal deposits, specifically the clastic-dominated (CD) Zn-Pb deposits, carbonate-hosted Mississippi Valley-type (MVT) deposits, sedimentary-rock hosted stratiform copper deposits, and carbonate-hosted polymetallic (“Kipushi type”) deposits, are or have been important sources of critical elements including Co, Ga, Ge, and Re. The generally poor data concerning trace element concentrations in these types of sediment-hosted ores suggest that there may be economically important concentrations of critical elements yet to be recognized.

TargetLink, a new method for identifying the endogenous target set of a specific microRNA in intact living cells.

PubMed

Xu, Yan; Chen, Yan; Li, Daliang; Liu, Qing; Xuan, Zhenyu; Li, Wen-Hong

2017-02-01

MicroRNAs are small non-coding RNAs acting as posttranscriptional repressors of gene expression. Identifying mRNA targets of a given miRNA remains an outstanding challenge in the field. We have developed a new experimental approach, TargetLink, that applied locked nucleic acid (LNA) as the affinity probe to enrich target genes of a specific microRNA in intact cells. TargetLink also consists a rigorous and systematic data analysis pipeline to identify target genes by comparing LNA-enriched sequences between experimental and control samples. Using miR-21 as a test microRNA, we identified 12 target genes of miR-21 in a human colorectal cancer cell by this approach. The majority of the identified targets interacted with miR-21 via imperfect seed pairing. Target validation confirmed that miR-21 repressed the expression of the identified targets. The cellular abundance of the identified miR-21 target transcripts varied over a wide range, with some targets expressed at a rather low level, confirming that both abundant and rare transcripts are susceptible to regulation by microRNAs, and that TargetLink is an efficient approach for identifying the target set of a specific microRNA in intact cells. C20orf111, one of the novel targets identified by TargetLink, was found to reside in the nuclear speckle and to be reliably repressed by miR-21 through the interaction at its coding sequence.

Late Cenozoic tectonic activity of the Altyn Tagh range: Constraints from sedimentary records from the Western Qaidam Basin, NE Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, Tao; Fang, Xiaomin; Wang, Yadong; Song, Chunhui; Zhang, Weilin; Yan, Maodu; Han, Wenxia; Zhang, Dawen

2018-07-01

The Altyn Tagh range (ATR) is the northern geological boundary of the Tibetan Plateau and plays a key role in accommodating its Cenozoic lithospheric deformation. However, knowledge of the structural style and age of uplift of the ATR is limited and controversial. The Qaidam Basin, in the southeast side of the ATR, provides an outstanding field laboratory for understanding the history and mechanisms of ATR growth. This study presents a detailed sedimentological analysis of a 1040-m-thick late Cenozoic ( 17-5.0 Ma) sedimentary sequence from the western Qaidam Basin, together with the analysis of sedimentological data from nearby boreholes and sections. Our aims were to determine the spatiotemporal evolution of the sedimentary sequences in the study area and to explore their response to late Cenozoic tectonic activity in the ATR. The results show three major intervals of the sedimentary characteristics in the study area: >17-16 Ma, 10 Ma and <5 Ma, which are closely related to the development of unconformities and growth strata recorded by high-resolution seismic reflection profiles. Combining the results with a comprehensive provenance analysis and with published records of regional climate change and tectonic activity, we discuss the possible factors responsible for the variations in the sedimentary characteristics of the studied sections. We conclude that significant tectonic responses in the western Qaidam Basin during the late Cenozoic were caused by three stages of tectonic activity of the ATR, at >17-16 Ma, 16-10 Ma and 10 Ma, during which the ATR respectively experienced tectonic uplift, fast strike-slip motion and intense uplift.

Morphology, sedimentary features and evolution of a large palaeo submarine canyon in Qiongdongnan basin, Northern South China Sea

NASA Astrophysics Data System (ADS)

Li, Xiangquan; Fairweather, Luke; Wu, Shiguo; Ren, Jianye; Zhang, Hongjie; Quan, Xiayun; Jiang, Tao; Zhang, Cheng; Su, Ming; He, Yunlong; Wang, Dawei

2013-01-01

The large Miocene-aged palaeo canyon that extents through the Qiongdongnan basin (QDNB) and Yinggehai basin (YGHB) of Northern South China Sea has been of considerable interest both economically and scientifically over the past decade. Stemmed from this, significant research has been employed into understanding the mechanism for its existence, incision, and sedimentary fill, yet debate remains. In the first case the canyon itself is actually quite anomalous. Alone from the size (over 570 km in length and more than 8 km in width (Yuan et al., 2009)), which is considerably more than most ancient deep-water channels (REFS), the canyon's sedimentary fill is also distinctly different. Some explanations have been given to explain the canyon's origin and existence, these include increased sediment supply from the Red River which is genetically linked to uplift of the Tibetan Plateau, lowstand turbidite and mass-transport activity, reactivation and dextral displacement of the Red River Fault zone inducing erosive gravity-flows, regional tilt of the QDNB and YGHB, paleo-seafloor morphology and seal-level fluctuations. With the application of new data obtained from interpretations of a large number of 2D seismic profiles, core and well log data, and tectonic and sedimentary analysis this contribution aims to: (1) Present models to explain the Canyon's sedimentary fill and basin plain deposits, which provided significant understanding of processes pre-, syn- and post-incision and; (2) review the plausibility and likelihood of each of the controlling mechanisms, hoping to shed light on this controversial aspect. We conclude that the final erosive event that shaped the canyon is dated at 5.5 Ma. The Canyon's unusual fill is a product of variation in the interaction between turbidity currents and MTD that blocked the canyon's axis, and the reduction in gravity flow energy through time; and therefore the complete succession represents one major erosive and cut event at 5.5 Ma and

New Advances in Re-Os Geochronology of Organic-rich Sedimentary Rocks.

NASA Astrophysics Data System (ADS)

Creaser, R. A.; Selby, D.; Kendall, B. S.

2003-12-01

Geochronology using 187Re-187Os is applicable to limited rock and mineral matrices, but one valuable application is the determination of depositional ages for organic-rich clastic sedimentary rocks like black shales. Clastic sedimentary rocks, in most cases, do not yield depositional ages using other radioactive isotope methods, but host much of Earth's fossil record upon which the relative geological timescale is based. As such, Re-Os dating of black shales has potentially wide application in timescale calibration studies and basin analysis, if sufficiently high precision and accuracy could be achieved. This goal requires detailed, systematic studies and evaluation of factors like standard compound stoichiometry, geologic effects, and the 187Re decay constant. Ongoing studies have resulted in an improved understanding of the abilities, limitations and systematics of the Re-Os geochronometer in black shales. First-order knowledge of the effects of processes like hydrocarbon maturation and low-grade metamorphism is now established. Hydrocarbon maturation does not impact the ability of the Re-Os geochronometer to determine depositional ages from black shales. The Re-Os age determined for the Exshaw Fm of western Canada is accurate within 2σ analytical uncertainty of the known age of the unit (U-Pb monazite from ash, conodont biostratigraphy). This suggests that the large improvement in precision attained for Re-Os dating of black shales by Cohen et al (ESPL 1999) over the pioneering work of Ravizza & Turekian (GCA 1989), relates to advances in analytical methodologies and sampling strategies, rather than a lack of disturbance by hydrocarbon maturation. We have found that a significant reduction in isochron scatter can be achieved by using an alternate dissolution medium, which preferentially attacks organic matter in which Re and Os are largely concentrated. This likely results from a more limited release of detrital Os and Re held in silicate materials during

Tissue-enriched expression profiles in Aedes aegypti identify hemocyte-specific transcriptome responses to infection

PubMed Central

Choi, Young-Jun; Fuchs, Jeremy F.; Mayhew, George F.; Yu, Helen E.; Christensen, Bruce M.

2012-01-01

Hemocytes are integral components of mosquito immune mechanisms such as phagocytosis, melanization, and production of antimicrobial peptides. However, our understanding of hemocyte-specific molecular processes and their contribution to shaping the host immune response remains limited. To better understand the immunophysiological features distinctive of hemocytes, we conducted genome-wide analysis of hemocyte-enriched transcripts, and examined how tissue-enriched expression patterns change with the immune status of the host. Our microarray data indicate that the hemocyte-enriched trascriptome is dynamic and context-dependent. Analysis of transcripts enriched after bacterial challenge in circulating hemocytes with respect to carcass added a dimension to evaluating infection-responsive genes and immune-related gene families. We resolved patterns of transcriptional change unique to hemocytes from those that are likely shared by other immune responsive tissues, and identified clusters of genes preferentially induced in hemocytes, likely reflecting their involvement in cell type specific functions. In addition, the study revealed conserved hemocyte-enriched molecular repertoires which might be implicated in core hemocyte function by cross-species meta-analysis of microarray expression data from Anopheles gambiae and Drosophila melanogaster. PMID:22796331

Identifying cryptotephra units using correlated rapid, nondestructive methods: VSWIR spectroscopy, X-ray fluorescence, and magnetic susceptibility

NASA Astrophysics Data System (ADS)

McCanta, Molly C.; Hatfield, Robert G.; Thomson, Bradley J.; Hook, Simon J.; Fisher, Elizabeth

2015-12-01

Understanding the frequency, magnitude, and nature of explosive volcanic eruptions is essential for hazard planning and risk mitigation. Terrestrial stratigraphic tephra records can be patchy and incomplete due to subsequent erosion and burial processes. In contrast, the marine sedimentary record commonly preserves a more complete historical record of volcanic activity as individual events are archived within continually accumulating background sediments. While larger tephra layers are often identifiable by changes in sediment color and/or texture, smaller fallout layers may also be present that are not visible to the naked eye. These cryptotephra are commonly more difficult to identify and often require time-consuming and destructive point counting, petrography, and microscopy work. Here we present several rapid, nondestructive, and quantitative core scanning methodologies (magnetic susceptibility, visible to shortwave infrared spectroscopy, and XRF core scanning) which, when combined, can be used to identify the presence of increased volcaniclastic components (interpreted to be cryptotephra) in the sedimentary record. We develop a new spectral parameter (BDI1000VIS) that exploits the absorption of the 1 µm near-infrared band in tephra. Using predetermined mixtures, BDI1000VIS can accurately identify tephra layers in concentrations >15-20%. When applied to the upper ˜270 kyr record of IODP core U1396C from the Caribbean Sea, and verified by traditional point counting, 29 potential cryptotephra layers were identified as originating from eruptions of the Lesser Antilles Volcanic Arc. Application of these methods in future coring endeavors can be used to minimize the need for physical disaggregation of valuable drill core material and allow for near-real-time recognition of tephra units, both visible and cryptotephra. This article was corrected on 23 DEC 2015. See the end of the full text for details.

Ecosystem disturbances in Central European spruce forests: a multi-proxy integration of dendroecology and sedimentary records

NASA Astrophysics Data System (ADS)

Clear, Jennifer; Chiverrell, Richard; Kunes, Petr; Svoboda, Miroslav; Boyle, John

2016-04-01

stand spatial scales, but are patchy in terms of reoccurrence. However they highlight levels of disturbance in the late 19th Century. Sediment records from lakes and forest hollows record variable pollen influx (beetle host / non-host ratios) and a stratigraphy that includes mineral in-wash events. μXRF scanning of lakes in the region with varying catchments and catchment-to-lake area ratios show spikes in K, Zr, Ti concentrations reflecting frequent erosive episodes throughout the Holocene. Linking across the temporal scales inherent in dendroecological (0 to 250 years) and sedimentary (0 to 11,500 years) is enhancing our understanding of disturbance dynamics. The identified recent and ongoing forest disturbances coupled with well-evidenced events in the 19th century highlight the need for the longer sedimentary perspective to assess whether contemporary climate warming has and continues to stretch the resilience of these fragile ecosystems. Our data are informative to the ongoing land-management conflict between active forest management (harvesting valuable timber and salvage logging) and forest conservation agenda encouraging forest dynamics and disturbance recovery.

Two-dimensional simulation of clastic and carbonate sedimentation, consolidation, subsidence, fluid flow, heat flow and solute transport during the formation of sedimentary basins

NASA Astrophysics Data System (ADS)

Bitzer, Klaus

1999-05-01

Geological processes that create sedimentary basins or act during their formation can be simulated using the public domain computer code `BASIN'. For a given set of geological initial and boundary conditions the sedimentary basin evolution is calculated in a forward modeling approach. The basin is represented in a two-dimensional vertical cross section with individual layers. The stratigraphic, tectonic, hydrodynamic and thermal evolution is calculated beginning at an initial state, and subsequent changes of basin geometry are calculated from sedimentation rates, compaction and pore fluid mobilization, isostatic compensation, fault movement and subsidence. The sedimentologic, hydraulic and thermal parameters are stored at discrete time steps allowing the temporal evolution of the basin to be analyzed. A maximum flexibility in terms of geological conditions is achieved by using individual program modules representing geological processes which can be switched on and off depending on the data available for a specific simulation experiment. The code incorporates a module for clastic and carbonate sedimentation, taking into account the impact of clastic sediment supply on carbonate production. A maximum of four different sediment types, which may be mixed during sedimentation, can be defined. Compaction and fluid flow are coupled through the consolidation equation and the nonlinear form of the equation of state for porosity, allowing nonequilibrium compaction and overpressuring to be calculated. Instead of empirical porosity-effective stress equations, a physically consistent consolidation model is applied which incorporates a porosity dependent sediment compressibility. Transient solute transport and heat flow are calculated as well, applying calculated fluid flow rates from the hydraulic model. As a measure for hydrocarbon generation, the Time-Temperature Index (TTI) is calculated. Three postprocessing programs are available to provide graphic output in Post

Intrinsic vulnerability assessment of shallow aquifers of the sedimentary basin of southwestern Nigeria

PubMed Central

2018-01-01

The shallow groundwater of the multi-layered sedimentary basin aquifer of southwestern Nigeria was assessed based on its intrinsic vulnerability property. The vulnerability evaluation involves determining the protective cover and infiltration condition of the unsaturated zone in the basin. This was achieved using the PI (P stands for protective cover effectiveness of the overlying lithology and I indicates the degree of infiltration bypass) vulnerability method of the European vulnerability approach. The PI method specifically measures the protection cover and the degree to which the protective cover is bypassed. Intrinsic parameters assessed were the subsoil, lithology, topsoil, recharge and fracturing for the protective cover. The saturated hydraulic conductivity of topsoil, infiltration processes and the lateral surface and subsurface flow were evaluated for the infiltration bypassed. The results show moderate to very low vulnerability areas. Low vulnerability areas were characterised by lithology with massive sandstone and limestone, subsoils of sandy loam texture, high slopes and high depth to water table. The moderate vulnerability areas were characterised by high rainfall and high recharge, low water table, unconsolidated sandstones and alluvium lithology. The intrinsic vulnerability properties shown in vulnerability maps will be a useful tool in planning and monitoring land use activities that can be of impact in groundwater pollution.

USING THE SEDIMENT QUALITY TRIAD (SQT) APPROACH TO ASSESS SEDIMENTARY CONTAMINATION IN THE ANACOSTIA RIVER, WASHINGTON

EPA Science Inventory

Using the Sediment Quality Triad (SQT) Approach to Assess Sedimentary Contamination in the Anacostia River, Washington, D.C. Velinsky, DJ*1, Ashley, JTF1,2, Pinkney, F.3, McGee, BL3 and Norberg-King, TJ.4 1Academy of Natural Sciences-PCER, Philadelphia, PA. 2Philadelphia Universi...

Sedimentary and Vegetative Impacts of Hurricane Irma to Coastal Wetland Ecosystems across Southwest Florida

NASA Astrophysics Data System (ADS)

Moyer, R. P.; Khan, N.; Radabaugh, K.; Engelhart, S. E.; Smoak, J. M.; Horton, B.; Rosenheim, B. E.; Kemp, A.; Chappel, A. R.; Schafer, C.; Jacobs, J. A.; Dontis, E. E.; Lynch, J.; Joyse, K.; Walker, J. S.; Halavik, B. T.; Bownik, M.

2017-12-01

Since 2014, our collaborative group has been working in coastal marshes and mangroves across Southwest Florida, including Tampa Bay, Charlotte Harbor, Ten Thousand Islands, Biscayne Bay, and the lower Florida Keys. All existing field sites were located within 50 km of Hurricane Irma's eye path, with a few sites in the Lower Florida Keys and Naples/Ten Thousand Islands region suffering direct eyewall hits. As a result, we have been conducting storm-impact and damage assessments at these locations with the primary goal of understanding how major hurricanes contribute to and/or modify the sedimentary record of mangroves and salt marshes. We have also assessed changes to the vegetative structure of the mangrove forests at each site. Preliminary findings indicate a reduction in mangrove canopy cover from 70-90% pre-storm, to 30-50% post-Irma, and a reduction in tree height of approximately 1.2 m. Sedimentary deposits consisting of fine carbonate mud up to 12 cm thick were imported into the mangroves of the lower Florida Keys, Biscayne Bay, and the Ten Thousand Islands. Import of siliciclastic mud up to 5 cm thick was observed in Charlotte Harbor. In addition to fine mud, all sites had imported tidal wrack consisting of a mixed seagrass and mangrove leaf litter, with some deposits as thick as 6 cm. In areas with newly opened canopy, a microbial layer was coating the surface of the imported wrack layer. Overwash and shoreline erosion were also documented at two sites in the lower Keys and Biscayne Bay, and will be monitored for change and recovery over the next few years. Because active research was being conducted, a wealth of pre-storm data exists, thus these locations are uniquely positioned to quantify hurricane impacts to the sedimentary record and standing biomass across a wide geographic area. Due to changes in intensity along the storm path, direct comparisons of damage metrics can be made to environmental setting, wind speed, storm surge, and distance to eyewall.

Records of Triassic volcanism in Pangean Great Lakes, and implications for reconstructing the distal effects of Large Igneous Provinces

NASA Astrophysics Data System (ADS)

Whiteside, J. H.; Percival, L.; Kinney, S.; Olsen, P. E.; Mather, T. A.; Philpotts, A.

2017-12-01

Documentation of the precise timing of volcanic eruptions in sedimentary records is key for linking volcanic activity to both historical and geological episodes of environmental change. Deposition of tuffs in sediments, and sedimentary enrichment of trace metals linked to igneous processes, are both commonly used for such correlations. In particular, sedimentary mercury (Hg) enrichments have been used as a marker for volcanic activity from Large Igneous Provinces (LIPs) to support their link to episodes of major climate change and mass extinction in the geological record. However, linking such enrichments to a specific eruption or eruption products is often challenging or impossible. In this study, the mercury records from two exactly contemporaneous latest Triassic-earliest Jurassic rift lakes are presented. Both sedimentary records feature igneous units proposed to be related to the later (Early Jurassic) stages of volcanism of the Central Atlantic Magmatic Province (CAMP). These CAMP units include a small tuff unit identified by thin-section petrology and identified at 10 localities over a distance of over 200 km, and a major CAMP basalt flow overlying this tuff (and dated at 200.916±0.064 Ma) which is also known across multiple sedimentary basins in both North America and Morocco and is thought to have been emplaced about 120 kyr after the tuff. A potential stratigraphic correlation between Hg enrichments and the igneous units is considered, and compared to the established records of mercury enrichments from the latest Triassic that are thought to be coeval with the earlier stages of CAMP volcanism. Investigating the Hg records of sedimentary successions containing tuffs and basalt units is an important step for demonstrating whether the mercury emissions from specific individual volcanic eruptions in the deep past can be identified in the geological record, and are thus important tools for interpreting the causes of associated past geological events, such as

Sedimentary organic matter variations in the Chukchi Borderland over the last 155 kyr

NASA Astrophysics Data System (ADS)

Rella, S. F.; Uchida, M.

2011-03-01

Knowledge on past variability of sedimentary organic carbon in the Arctic Ocean is important to assess natural carbon cycling and transport processes related to global climate changes. However, the late Pleistocene oceanographic history of the Arctic is still poorly understood. In the present study we show sedimentary records of total organic carbon (TOC), C/N and CaCO3 from a piston core recovered from the northern Northwind Ridge in the far western Arctic Ocean, a region potentially sensitively responding to past variability in surface current regimes and sedimentary processes such as coastal erosion. An age model based on correlation of our CaCO3 record with the benthic δ18O stack, supplemented by lithological constraints, suggests that the piston core records paleoenvironmental changes of the last 155 kyr. According to this age model, TOC and C/N show orbital-scale increases and decreases that can be respectively correlated to the waxing and waning of large ice sheets dominating the Eurasian Arctic, suggesting advection of fine suspended matter derived from glacial erosion to the Northwind Ridge by eastward flowing intermediate water and/or surface water and sea ice during cold episodes of the last two glacial-interglacial cycles. At millennial scales, increases in TOC and C/N appear to correlate to a suite of Dansgaard-Oeschger Stadials between 120 and 40 ka before present (BP) and thus seem to respond to abrupt northern hemispheric temperature changes. Between 65 and 40 ka BP, closures and openings of the Bering Strait could have additionally influenced TOC and C/N variability. CaCO3 content tends to anti-correlate with TOC and C/N on both orbital and millennial time scales, which we interpret as enhanced sediment advection from the carbonate-rich Canadian Arctic via an extended Beaufort Gyre during warm periods of the last two glacial-interglacial cycles and increased terrestrial organic carbon advection from the Siberian Arctic during cold periods when the

Origin and effect factors of sedimentary organic carbon in a karst groundwater-fed reservoir, South China.

PubMed

Huang, Siyu; Pu, Junbing; Cao, Jianhua; Li, Jianhong; Zhang, Tao; Jiang, Feng; Li, Li; Wu, Feihong; Pan, Moucheng; Bai, Bing

2018-03-01

Reservoirs are commonly recharged by groundwater that is rich in bicarbonate ions in karst regions of South China, and the recharge of this groundwater to the reservoir can affect the biogeochemical processes of carbon sedimentation at the reservoir bottom. In this study, Dalongdong Reservoir, which is mainly recharged by two subterranean streams, was investigated based on a 42-cm-thick sedimentary core and the 210 Pb/ 137 Cs dating technique and isotope analyses to understand the sedimentary history and identify the carbon sources. The 210 Pb/ 137 Cs age model showed that the sediments were accumulated over the last 60 years. The annual increase precipitation and temperature showed no obvious change compared with trends of δ 13 C in total organic carbon (δ 13 C org ), δ 15 N values in total nitrogen, and the carbon and nitrogen ratio (C/N). This shows that climate was not the main control of the variation in sediment factors. Based on δ 13 C org , δ 15 N, C/N, and isotopic mixing modeling, sources of organic carbon in the sediments were derived from plankton (60.84%), soil (22.93%), waste water (14.56%), and terrestrial plants (1.67%). From 1958 to 1978, reservoir establishment and leakage affected the contribution of the four sources. The contribution of the plankton source increased from 1978 to 2015, resulting from change of water level and continued input of external nitrogen. However, because of the revegetation supplied by an economic aid project the contribution of soil showed a considerable decreasing trend from 1978 to 2002. After 2002, For "Grain for Green" project, the contribution from soil further decreased. After reservoir construction, the contribution of waste water stabilized. The contribution of terrestrial plants started increased rapidly after 2002. Karst groundwater, which contains more dissolved inorganic carbon containing lower δ 13 C DIC than the water sources of other lakes or reservoirs, makes the δ 13 C org value of sediment more

Sparse Feature Selection Identifies H2A.Z as a Novel, Pattern-Specific Biomarker for Asymmetrically Self-Renewing Distributed Stem Cells

PubMed Central

Huh, Yang Hoon; Noh, Minsoo; Burden, Frank R.; Chen, Jennifer C.; Winkler, David A.; Sherley, James L.

2015-01-01

There is a long-standing unmet clinical need for biomarkers with high specificity for distributed stem cells (DSCs) in tissues, or for use in diagnostic and therapeutic cell preparations (e.g., bone marrow). Although DSCs are essential for tissue maintenance and repair, accurate determination of their numbers for medical applications has been problematic. Previous searches for biomarkers expressed specifically in DSCs were hampered by difficulty obtaining pure DSCs and by the challenges in mining complex molecular expression data. To identify DSC such useful and specific biomarkers, we combined a novel sparse feature selection method with combinatorial molecular expression data focused on asymmetric self-renewal, a conspicuous property of DSCs. The analysis identified reduced expression of the histone H2A variant H2A.Z as a superior molecular discriminator for DSC asymmetric self-renewal. Subsequent molecular expression studies showed H2A.Z to be a novel “pattern-specific biomarker” for asymmetrically self-renewing cells with sufficient specificity to count asymmetrically self-renewing DSCs in vitro and potentially in situ. PMID:25636161

The Role of the Sedimentary Regime in Shaping the Distribution of Subtidal Sandbank Environments and the Associated Meiofaunal Nematode Communities: An Example from the Southern North Sea

PubMed Central

Schratzberger, Michaela; Larcombe, Piers

2014-01-01

We combined sediment and faunal data to explore the role of the sedimentary regime in shaping the distribution of subtidal sandbank environments and the associated meiofaunal nematode communities at Broken Bank and Swarte Bank, in the southern North Sea. A variety of sediment transport processes occur in the area, differing in the frequency and magnitude of sediment mobility, and the continuum between erosion, translation and sediment accumulation. The seabed contained a variety of bedforms, including longitudinal furrows, and small to very large sandwaves. The bed sediments were dominated by fine and medium sands, with admixtures of silt and gravel. Based on sedimentary bedforms and grain size analysis, a total of 11 sedimentary facies were delineated, of which 8 were analysed in detail for their relationships with the meiofauna. The sedimentary facies fell clearly into groups of facies, respectively representing high, high-moderate and moderate, and episodic sediment mobility. For those sedimentary facies where daily movement of sediments and bedforms occurred (‘high’ sediment mobility), the resulting spatially homogeneous environments were dominated by an impoverished nematode community comprising small deposit feeders and large predators. Resistance to sediment movement and the ability to exploit alternative food sources were prominent functional features of the successful colonisers. Those facies characterised by relatively infrequent sediment mobility (‘episodic’ and ‘high-moderate and moderate’ sediment mobility) comprised a heterogeneous suite of benthic habitats, containing taxonomically and functionally diverse assemblages of nematodes of various sizes, feeding types and reproductive potential. Faunal distribution patterns here indicated trade-offs between the resistance to sediment movement, environmental tolerance and competitive abilities. Our focus on diverse assemblages of organisms with high turnover times, inhabiting highly dynamic

Sex-Specific Genetic Loci for Femoral Neck Bone Mass and Strength Identified in Inbred COP and DA Rats

PubMed Central

Alam, Imranul; Sun, Qiwei; Liu, Lixiang; Koller, Daniel L; Carr, Lucinda G; Econs, Michael J; Foroud, Tatiana; Turner, Charles H

2008-01-01

Introduction Hip fracture is the most devastating osteoporotic fracture type with significant morbidity and mortality. Several studies in humans identified chromosomal regions linked to hip size and bone mass. Animal models, particularly the inbred rat, serve as complementary approaches for studying the genetic influence on hip fragility. The purpose of this study is to identify sex-independent and sex-specific quantitative trait loci (QTLs) for femoral neck density, structure, and strength in inbred Copenhagen 2331 (COP) and Dark Agouti (DA) rats. Materials and Methods A total of 828 (405 males and 423 females) F2 progeny derived from the inbred COP and DA strains of rats were phenotyped for femoral neck volumetric BMD (vBMD), cross-sectional area, polar moment of inertia (Ip), neck width, ultimate force, and energy to break. A whole genome screen was performed using 93 microsatellite markers with an average intermarker distance of 20 cM. Recombination-based marker maps were generated using MAPMAKER/EXP from the COP × DA F2 data and compared with published Rat Genome Database (RGD) maps. These maps were used for genome-wide linkage analyses to detect sex-independent and sex-specific QTLs. Results Significant evidence of linkage (p < 0.01) for sex-independent QTLs were detected for (1) femoral neck vBMD on chromosomes (Chrs) 1, 6, 10, and 12, (2) femoral neck structure on Chrs 5, 7, 10, and 18, and (3) biomechanical properties on Chrs 1 and 4. Male-specific QTLs were discovered on Chrs 2, 9, and 18 for total vBMD, on Chr 17 for trabecular vBMD, on Chr 9 for total bone area, and on Chr 15 for ultimate force. A female-specific QTL was discovered on Chr 2 for ultimate force. The effect size of the individual QTL varied between 1% and 4%. Conclusions We detected evidence that sex-independent and sex-specific QTLs contribute to hip fragility in the inbred rat. Several QTLs regions identified in this study are homologous to human chromosomal regions previously linked to

A rapid method for concentrating sedimentary organic matter for vitrinite reflectance analysis.

USGS Publications Warehouse

Barker, C.E.

1982-01-01

The tecnique discussed in this paper utilizes crushing, high-speed blending, and ultrasonic treatment to mechanically disaggregate rock and release the sedimentary organic matter (OM) in a suitable heavy liquid. This new method can provide freeze-dried concentrated OM in approximately 8 to 24 hours (longer time is necessary for removing carbonate). Under optimal conditions, it is possible to concentrate the OM and prepare a hardened epoxy microscope slide in about 24 hours. Subsequent grinding, polishing, and drying allows microscopic examination of the organic concentrate the next day.-from Author

Evolution of a Permo-Triassic sedimentary melange, Grindstone terrane, east-central Oregon

USGS Publications Warehouse

Blome, C.D.; Nestell, M.K.

1991-01-01

Perceives the Grindstone rocks to be a sedimentary melange composed of Paleozoic limestone slide and slump blocks that became detached from a carbonate shelf fringing a volcanic knoll or edifice in Late Permian to Middle Triassic time and were intermixed with Permian and Triassic slope to basinal clastic and volcaniclastic rocks in a forearc basin setting. Paleogeographic affinities of the Grindstone limestone faunas and volcaniclastic debris in the limestone and clastic rocks all indicate deposition in promixity to an island-arc system near the North American craton. -from Authors

SedMob: A mobile application for creating sedimentary logs in the field

NASA Astrophysics Data System (ADS)

Wolniewicz, Pawel

2014-05-01

SedMob is an open-source, mobile software package for creating sedimentary logs, targeted for use in tablets and smartphones. The user can create an unlimited number of logs, save data from each bed in the log as well as export and synchronize the data with a remote server. SedMob is designed as a mobile interface to SedLog: a free multiplatform package for drawing graphic logs that runs on PC computers. Data entered into SedMob are saved in the CSV file format, fully compatible with SedLog.

Large Carbonate Associated Sulfate isotopic variability between brachiopods, micrite, and other sedimentary components in Late Ordovician strata

NASA Astrophysics Data System (ADS)

Present, Theodore M.; Paris, Guillaume; Burke, Andrea; Fischer, Woodward W.; Adkins, Jess F.

2015-12-01

Carbonate Associated Sulfate (CAS) is trace sulfate incorporated into carbonate minerals during their precipitation. Its sulfur isotopic composition is often assumed to track that of seawater sulfate and inform global carbon and oxygen budgets through Earth's history. However, many CAS sulfur isotope records based on bulk-rock samples are noisy. To determine the source of bulk-rock CAS variability, we extracted CAS from different internal sedimentary components micro-drilled from well-preserved Late Ordovician and early Silurian-age limestones from Anticosti Island, Quebec, Canada. Mixtures of these components, whose sulfur isotopic compositions vary by nearly 25‰, can explain the bulk-rock CAS range. Large isotopic variability of sedimentary micrite CAS (34S-depleted from seawater by up to 15‰) is consistent with pore fluid sulfide oxidation during early diagenesis. Specimens recrystallized during burial diagenesis have CAS 34S-enriched by up to 9‰ from Hirnantian seawater, consistent with microbial sulfate reduction in a confined aquifer. In contrast to the other variable components, brachiopods with well-preserved secondary-layer fibrous calcite-a phase independently known to be the best-preserved sedimentary component in these strata-have a more homogeneous isotopic composition. These specimens indicate that seawater sulfate remained close to about 25‰ (V-CDT) through Hirnantian (end-Ordovician) events, including glaciation, mass extinction, carbon isotope excursion, and pyrite-sulfur isotope excursion. The textural relationships between our samples and their CAS isotope ratios highlight the role of diagenetic biogeochemical processes in setting the isotopic composition of CAS.

A Novel Layered Sedimentary Rocks Structure of the Oxygen-Enriched Carbon for Ultrahigh-Rate-Performance Supercapacitors.

PubMed

Zhang, Lin-Lin; Li, Huan-Huan; Shi, Yan-Hong; Fan, Chao-Ying; Wu, Xing-Long; Wang, Hai-Feng; Sun, Hai-Zhu; Zhang, Jing-Ping

2016-02-17

In this paper, gelatin as a natural biomass was selected to successfully prepare an oxygen-enriched carbon with layered sedimentary rocks structure, which exhibited ultrahigh-rate performance and excellent cycling stability as supercapacitors. The specific capacitance reached 272.6 F g(-1) at 1 A g(-1) and still retained 197.0 F g(-1) even at 100 A g(-1) (with high capacitance retention of 72.3%). The outstanding electrochemical performance resulted from the special layered structure with large surface area (827.8 m(2) g(-1)) and high content of oxygen (16.215 wt %), which effectively realized the synergistic effects of the electrical double-layer capacitance and pseudocapacitance. Moreover, it delivered an energy density of 25.3 Wh kg(-1) even with a high power density of 34.7 kW kg(-1) and ultralong cycling stability (with no capacitance decay even over 10,000 cycles at 2 A g(-1)) in a symmetric supercapacitor, which are highly desirable for their practical application in energy storage devices and conversion.

Sedimentary fabrics of the macrotidal, mud-dominated, inner estuary to fluvio-tidal transition zone, Petitcodiac River estuary, New Brunswick, Canada

NASA Astrophysics Data System (ADS)

Shchepetkina, Alina; Gingras, Murray K.; Zonneveld, John-Paul; Pemberton, S. George

2016-03-01

The study provides a detailed description of mud-dominated sedimentary fabrics and their application for the rock record within the inner estuary to the fluvial zone of the Petitcodiac River estuary, New Brunswick, Canada. Sedimentological characteristics and facies distributions of the clay- and silt-rich deposits are reported. The inner estuary is characterized by thick accumulations of interbedded silt and silty clay on intertidal banks that flank the tidally influenced channel. The most common sedimentary structures observed are parallel and wavy lamination, small-scale soft-sediment deformation with microfaults, and clay and silt current ripples. The tidal channel contains sandy silt and clayey silt with planar lamination, massive and convolute bedding. The fluvio-tidal transition zone is represented by interbedded trough cross-stratified sand and gravel beds with planar laminated to massive silty mud. The riverine, non-tidal reach of the estuary is characterized by massive, planar tabular and trough cross-stratified gravel-bed deposits. The absence of bioturbation within the inner estuary to the fluvio-tidal transition zone can be explained by the following factors: low water salinities (0-5 ppt), amplified tide and current speeds, and high concentrations of flocculated material in the water body. Notably, downstream in the middle and outer estuary, bioturbation is seasonally pervasive: in those locales the sedimentary conditions are similar, but salinity is higher. In this study, the sedimentological (i.e., grain size, bedding characters, sedimentary structures) differences between the tidal estuary and the fluvial setting are substantial, and those changes occur over only a few hundred meters. This suggests that the widely used concept of an extensive fluvio-tidal transition zone and its depositional character may not be a geographically significant component of fluvial or estuary deposits, which can go unnoticed in the study of the ancient rocks.

Exome chip meta-analysis identifies novel loci and East Asian-specific coding variants contributing to lipid levels and coronary artery disease

PubMed Central

Lu, Xiangfeng; Peloso, Gina M; Liu, Dajiang J.; Wu, Ying; Zhang, He; Zhou, Wei; Li, Jun; Tang, Clara Sze-man; Dorajoo, Rajkumar; Li, Huaixing; Long, Jirong; Guo, Xiuqing; Xu, Ming; Spracklen, Cassandra N.; Chen, Yang; Liu, Xuezhen; Zhang, Yan; Khor, Chiea Chuen; Liu, Jianjun; Sun, Liang; Wang, Laiyuan; Gao, Yu-Tang; Hu, Yao; Yu, Kuai; Wang, Yiqin; Cheung, Chloe Yu Yan; Wang, Feijie; Huang, Jianfeng; Fan, Qiao; Cai, Qiuyin; Chen, Shufeng; Shi, Jinxiu; Yang, Xueli; Zhao, Wanting; Sheu, Wayne H.-H.; Cherny, Stacey Shawn; He, Meian; Feranil, Alan B.; Adair, Linda S.; Gordon-Larsen, Penny; Du, Shufa; Varma, Rohit; da Chen, Yii-Der I; Shu, XiaoOu; Lam, Karen Siu Ling; Wong, Tien Yin; Ganesh, Santhi K.; Mo, Zengnan; Hveem, Kristian; Fritsche, Lars; Nielsen, Jonas Bille; Tse, Hung-fat; Huo, Yong; Cheng, Ching-Yu; Chen, Y. Eugene; Zheng, Wei; Tai, E Shyong; Gao, Wei; Lin, Xu; Huang, Wei; Abecasis, Goncalo; Consortium, GLGC; Kathiresan, Sekar; Mohlke, Karen L.; Wu, Tangchun; Sham, Pak Chung; Gu, Dongfeng; Willer, Cristen J

2017-01-01

Most genome-wide association studies have been conducted in European individuals, even though most genetic variation in humans is seen only in non-European samples. To search for novel loci associated with blood lipid levels and clarify the mechanism of action at previously identified lipid loci, we examined protein-coding genetic variants in 47,532 East Asian individuals using an exome array. We identified 255 variants at 41 loci reaching chip-wide significance, including 3 novel loci and 14 East Asian-specific coding variant associations. After meta-analysis with > 300,000 European samples, we identified an additional 9 novel loci. The same 16 genes were identified by the protein-altering variants in both East Asians and Europeans, likely pointing to the functional genes. Our data demonstrate that most of the low-frequency or rare coding variants associated with lipids are population-specific, and that examining genomic data across diverse ancestries may facilitate the identification of functional genes at associated loci. PMID:29083407

Tide-Dominated Tract (TDT) as a key sedimentary zone characterizing tide-dominated large-river delta and estuary systems

NASA Astrophysics Data System (ADS)

Saito, Y.

2017-12-01

Large rivers in continents have a characteristic of slow rise and fall in water levels during floods or the wet season due to a wide drainage basin. A gentle river gradient and large water discharge have relatively large tidal ranges at the river mouth, resulting in large backwater effects further upstream. The result of the Mekong River survey (386 riverbed sediments, river topography, CTD, and biofacies) shows that the distributary channels of the Mekong River delta in Vietnam are divided into two parts: the landward river-dominated tract (RDT) and seaward tide-dominated tract (TDT). The RDT is characterized by a highly variable and deepening trend in water depth and coarse-grained sediments with a fining trend downstream. The TDT is characterized by a shallowing trend in water depth with river-widening, smooth riverbeds, a straight shape, and heterolithic f- to vf-sand and mud alternation (tidal thythmite). The boundary of both tracts is sharply identified by sediment facies and river morphology. Sediment facies indicates that the dominant sedimentary process of bottom sediments is "bedload" in the RDT and "suspension" in the TDT. Daily tidal changes are observed through the year, while water-level changes during the flood/wet season are limited in the TDT. Saltwater intrusion is limited within the seaward part of the TDT alone ( 50 km), close to final bifurcation points. However, brackish-water biofacies is observed in the TDT mainly due to diluted brackish water and/or tolerance to the freshwater environment. These characteristics are also found in the Yangtze; the distance of the TDT/RDT boundary from the river mouth is ca. 100 km in the Mekong, and 200 km in the Yangtze. The preservation potential of sediments in a TDT is low in a progradational system, and high in abandoned channels. The early Holocene transgressive estuary system in the incised valley of the Yangtze formed during the Last Glacial Maximum was composed of 20 m-thick fine-grained heterolithic

Shaler: in situ analysis of a fluvial sedimentary deposit on Mars

USGS Publications Warehouse

Edgar, Lauren; Gupta, Sanjeev; Rubin, David M.; Lewis, Kevin W.; Kocurek, Gary A.; Anderson, Ryan; Bell, James F.; Dromart, Gilles; Edgett, Kenneth S.; Grotzinger, John P.; Hardgrove, Craig; Kah, Linda C.; LeVeille, Richard A.; Malin, Michael C.; Mangold, Nicholas; Milliken, Ralph E.; Minitti, Michelle; Palucis, Marisa C.; Rice, Melissa; Rowland, Scott K.; Schieber, Juergen; Stack, Kathryn M.; Sumner, Dawn Y.; Wiens, Roger C.; Williams, Rebecca M.E.; Williams, Amy J.

2018-01-01

This paper characterizes the detailed sedimentology of a fluvial sandbody on Mars for the first time, and interprets its depositional processes and palaeoenvironmental setting. Despite numerous orbital observations of fluvial landforms on the surface of Mars, ground-based characterization of the sedimentology of such fluvial deposits has not previously been possible. Results from the NASA Mars Science Laboratory Curiosity rover provide an opportunity to reconstruct at fine scale the sedimentary architecture and palaeomorphology of a fluvial environment on Mars. This work describes the grain size, texture, and sedimentary facies of the Shaler outcrop, reconstructs the bedding architecture, and analyses cross-stratification to determine palaeocurrents. On the basis of bedset geometry and inclination, grain-size distribution, and bedform migration direction, this study concludes that the Shaler outcrop likely records the accretion of a fluvial barform. The majority of the outcrop consists of large-scale trough cross-bedding of coarse sand and granules. Palaeocurrent analyses and bedform reconstruction indicate that the beds were deposited by bedforms that migrated towards the northeast, across the surface of a bar that migrated southeast. Stacked cosets of dune cross-bedding suggest aggradation of multiple bedforms, which provides evidence for short periods of sustained flow during Shaler deposition. However, local evidence for aeolian reworking and the presence of potential desiccation cracks within the outcrop suggests that fluvial deposition may have been intermittent. The uppermost strata at Shaler are distinct in terms of texture and chemistry, and are inferred to record deposition from a different sediment dispersal system with a contrasting provenance. The outcrop as a whole is a testament to the availability of liquid water on the surface of Mars in its early history.

Hydrological and sedimentary controls over fluvial thermal erosion, the Lena River, central Yakutia

NASA Astrophysics Data System (ADS)

Tananaev, Nikita I.

2016-01-01

Water regime and sedimentary features of the middle Lena River reach near Yakutsk, central Yakutia, were studied to assess their control over fluvial thermal erosion. The Lena River floodplain in the studied reach has complex structure and embodies multiple levels varying in height and origin. Two key sites, corresponding to high and medium floodplain levels, were surveyed in 2008 to describe major sedimentary units and properties of bank material. Three units are present in both profiles, corresponding to topsoil, overbank (cohesive), and channel fill (noncohesive) deposits. Thermoerosional activity is mostly confined to a basal layer of frozen channel fill deposits and in general occurs within a certain water level interval. Magnitude-frequency analysis of water level data from Tabaga gauging station shows that a single interval can be deemed responsible for the initiation of thermal action and development of thermoerosional notches. This interval corresponds to the discharges between 21,000 and 31,000 m3 s- 1, observed normally during spring meltwater peak and summer floods. Competence of fluvial thermal erosion depends on the height of floodplain level being eroded, as it acts preferentially in high floodplain banks. In medium floodplain banks, thermal erosion during spring flood is constrained by insufficient bank height, and erosion is essentially mechanical during summer flood season. Bank retreat rate is argued to be positively linked with bank height under periglacial conditions.

The interplay of fractures and sedimentary architecture: Natural gas from reservoirs in the Molina sandstones, Piceance Basin, Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lorenz, J.C.

1997-03-01

The Molina Member of the Wasatch Formation produces natural gas from several fields along the Colorado River in the Piceance Basin, northwestern Colorado. The Molina Member is a distinctive sandstone that was deposited in a unique fluvial environment of shallow-water floods. This is recorded by the dominance of plane-parallel bedding in many of the sandstones. The Molina sandstones crop out on the western edge of the basin, and have been projected into the subsurface and across the basin to correlate with thinner sandy units of the Wasatch Formation at the eastern side of the basin. Detailed study, however, has shownmore » that the sedimentary characteristics of the type-section Molina sandstones are incompatible with a model in which the eastern sandstones are its distal facies equivalent. Rather, the eastern sandstones represent separate and unrelated sedimentary systems that prograded into the basin from nearby source-area highlands. Therefore, only the subsurface {open_quotes}Molina{close_quotes} reservoirs that are in close proximity to the western edge of the basin are continuous with the type-section sandstones. Reservoirs in the Grand Valley and Rulison gas fields were deposited in separate fluvial systems. These sandstones contain more typical fluvial sedimentary structures such as crossbeds and lateral accretion surfaces. Natural fractures play an important role in enhancing the conductivity and permeability of the Molina and related sandstones of the Wasatch Formation.« less

Determination of Cenozoic sedimentary structures using integrated geophysical surveys: A case study in the Barkol Basin, Xinjiang, China

NASA Astrophysics Data System (ADS)

Sun, Kai; Chen, Chao; Du, Jinsong; Wang, Limin; Lei, Binhua

2018-01-01

Thickness estimation of sedimentary basin is a complex geological problem, especially in an orogenic environment. Intense and multiple tectonic movements and climate changes result in inhomogeneity of sedimentary layers and basement configurations, which making sedimentary structure modelling difficult. In this study, integrated geophysical methods, including gravity, magnetotelluric (MT) sounding and electrical resistivity tomography (ERT), were used to estimate basement relief to understand the geological structure and evolution of the eastern Barkol Basin in China. This basin formed with the uplift of the eastern Tianshan during the Cenozoic. Gravity anomaly map revealed the framework of the entire area, and ERT as well as MT sections reflected the geoelectric features of the Cenozoic two-layer distribution. Therefore, gravity data, constrained by MT, ERT and boreholes, were utilized to estimate the spatial distribution of the Quaternary layer. The gravity effect of the Quaternary layer related to the Tertiary layer was later subtracted to obtain the residual anomaly for inversion. For the Tertiary layer, the study area was divided into several parts because of lateral difference of density contrasts. Gravity data were interpreted to determine the density contrast constrained by the MT results. The basement relief can be verified by geological investigation, including the uplift process and regional tectonic setting. The agreement between geophysical survey and prior information from geology emphasizes the importance of integrated geophysical survey as a complementary means of geological studies in this region.

Report of the Workshop on Geologic Applications of Remote Sensing to the Study of Sedimentary Basins

NASA Technical Reports Server (NTRS)

Lang, H. R. (Editor)

1985-01-01

The Workshop on Geologic Applications of Remote Sensing to the Study of Sedimentary Basins, held January 10 to 11, 1985 in Lakewood, Colorado, involved 43 geologists from industry, government, and academia. Disciplines represented ranged from vertebrate paleontology to geophysical modeling of continents. Deliberations focused on geologic problems related to the formation, stratigraphy, structure, and evolution of foreland basins in general, and to the Wind River/Bighorn Basin area of Wyoming in particular. Geological problems in the Wind River/Bighorn basin area that should be studied using state-of-the-art remote sensing methods were identified. These include: (1) establishing the stratigraphic sequence and mapping, correlating, and analyzing lithofacies of basin-filling strata in order to refine the chronology of basin sedimentation, and (2) mapping volcanic units, fracture patterns in basement rocks, and Tertiary-Holocene landforms in searches for surface manifestations of concealed structures in order to refine models of basin tectonics. Conventional geologic, topographic, geophysical, and borehole data should be utilized in these studies. Remote sensing methods developed in the Wind River/Bighorn Basin area should be applied in other basins.

End-Cretaceous akaganéite as a mineral marker of Deccan volcanism in the sedimentary record.

PubMed

Font, Eric; Carlut, Julie; Rémazeilles, Céline; Mather, Tamsin A; Nédélec, Anne; Mirão, José; Casale, Sandra

2017-09-13

An enigmatic chloride-rich iron (oxyhydr)oxide has been recently identified together with mercury anomalies in End-Cretaceous marine sediments coeval with the Deccan Traps eruptions. The mineral was observed in Bidart (France) and Gubbio (Italy), suggesting a widespread phenomenon. However, the exact nature and origin of this Cl-bearing mineral remained speculative. Here, we characterized the accurate composition and nanostructure of this chloride-rich phase by using micro-Raman spectroscopy, Transmission (TEM) and Scanning (SEM) Electron Microscopy on Focused Ion Beam foils. We also provide new evidence of its occurrence in Zumaia, a reference KPg section from Spain. Results confirm akaganéite (β-FeOOH) as the main phase, with chloride content of 3-5 atomic weight %. Akaganéite particles are constituted by the aggregation of nanorods of akaganéite. Internal structures contain empty spaces, suggesting formation in a low-density (atmospheric) environment. This new mineralogical evidence supports the hypothesis that the observed akaganéite was formed in the Deccan volcanic plume and was transported to the Atlantic and Tethysian realms through the stratosphere. Therefore, akaganéite provides a potential new sedimentary marker to identify the imprint of the Deccan eruptions in the stratigraphic record and is evidence of volcanic halogen degassing and its potential role for the Cretaceous-Tertiary mass extinction.

Using Crater Counts to Constrain Erosion Rates on Mars: Implications for the Global Dust Cycle, Sedimentary Rock Erosion and Organic Matter Preservation

NASA Astrophysics Data System (ADS)

Mayer, D. P.; Kite, E. S.

2016-12-01

Sandblasting, aeolian infilling, and wind deflation all obliterate impact craters on Mars, complicating the use of crater counts for chronology, particularly on sedimentary rock surfaces. However, crater counts on sedimentary rocks can be exploited to constrain wind erosion rates. Relatively small, shallow craters are preferentially obliterated as a landscape undergoes erosion, so the size-frequency distribution of impact craters in a landscape undergoing steady exhumation will develop a shallower power-law slope than a simple production function. Estimating erosion rates is important for several reasons: (1) Wind erosion is a source of mass for the global dust cycle, so the global dust reservoir will disproportionately sample fast-eroding regions; (2) The pace and pattern of recent wind erosion is a sorely-needed constraint on models of the sculpting of Mars' sedimentary-rock mounds; (3) Near-surface complex organic matter on Mars is destroyed by radiation in <108 years, so high rates of surface exhumation are required for preservation of near-surface organic matter. We use crater counts from 18 HiRISE images over sedimentary rock deposits as the basis for estimating erosion rates. Each image was counted by ≥3 analysts and only features agreed on by ≥2 analysts were included in the erosion rate estimation. Erosion rates range from 0.1-0.2 {μ }m/yr across all images. These rates represent an upper limit on surface erosion by landscape lowering. At the conference we will discuss the within and between-image variability of erosion rates and their implications for recent geological processes on Mars.

Resolving environmental signatures from a paleovalley sedimentary sequence from arid northwest Australia

NASA Astrophysics Data System (ADS)

Rouillard, Alexandra; Skrzypek, Grzegorz; Dogramaci, Shawan; Grierson, Pauline

2014-05-01

Sediments from paleolakes can retain invaluable archives of past environmental conditions. However, deciphering a depositional signal from digenetic processes can be challenging in arid environments owing to extremely variable rainfall and saline groundwaters, which result in aggressive chemical conditions that often limit the preservation of traditionally used proxies. We investigated the development of hydroclimatic proxies based on sediment geochemistry from the Fortescue Marsh, in the arid Pilbara region of northwest Australia. The Marsh lies in a paleovalley that acts as a terminal basin for the upper part of the Fortescue River and consists of a ~1000 km2 contiguous floodplain with freshwater pools episodically inundated during intense rainfall events. The paleovalley is bound by mountain ranges that contain some of the most Fe-ore rich and ancient deposits on Earth, which we expected to confer unique geochemical characteristics to the sediments. We used a sonic rig to retrieve a 25 m core from one of the deepest sedimentary sections of the Fortescue Marsh (86 m to bedrock). We combined δ34S and δ18O stable isotopes analyses with scanning μXRF and reflectance spectroscopy to quantitatively map the elemental and mineralogical composition of the sedimentary sequence and to identify underlying mechanisms relating to paleoclimate. We found that Fe, Ca and Sr were the most abundant elements identified by μXRF. Typically, layers of up to 1 m that were almost exclusively Fe-dominated alternated with layers of 0.3-2.4 m thickness dominated by Ca and/or Sr, with at least five intervals with distinct peaks in Sr. As expected, the hyperspectral characterization confirmed that Fe oxides were most abundant during the Fe-rich intervals. While clay minerals including kaolinite and montmorillonite were also indicated from the spectral data, this assessment is contradicted by the low relative abundance of Al and Si. Peaks in Sr don't appear to reflect carbonates nor Sr

Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection

PubMed Central

Asher, Tedi E.; Wilson, Nancy A.; Nason, Martha C.; Brenchley, Jason M.; Metzler, Ian S.; Venturi, Vanessa; Gostick, Emma; Chattopadhyay, Pratip K.; Roederer, Mario; Davenport, Miles P.; Watkins, David I.; Douek, Daniel C.

2009-01-01

Despite the pressing need for an AIDS vaccine, the determinants of protective immunity to HIV remain concealed within the complexity of adaptive immune responses. We dissected immunodominant virus-specific CD8+ T cell populations in Mamu-A*01+ rhesus macaques with primary SIV infection to elucidate the hallmarks of effective immunity at the level of individual constituent clonotypes, which were identified according to the expression of distinct T cell receptors (TCRs). The number of public clonotypes, defined as those that expressed identical TCR β-chain amino acid sequences and recurred in multiple individuals, contained within the acute phase CD8+ T cell population specific for the biologically constrained Gag CM9 (CTPYDINQM; residues 181–189) epitope correlated negatively with the virus load set point. This independent molecular signature of protection was confirmed in a prospective vaccine trial, in which clonotype engagement was governed by the nature of the antigen rather than the context of exposure and public clonotype usage was associated with enhanced recognition of epitope variants. Thus, the pattern of antigen-specific clonotype recruitment within a protective CD8+ T cell population is a prognostic indicator of vaccine efficacy and biological outcome in an AIDS virus infection. PMID:19349463

The role of Mesozoic sedimentary basin tapers on the formation of Cenozoic crustal shortening structures and foredeep in the western Sichuan Basin, China

NASA Astrophysics Data System (ADS)

Wang, M.

2017-12-01

The foreland basin records important clues of tectonic and sedimentary process of mountain-building, thus to explore its dynamic mechanism on the formation is an important issue of the mountain-basin interaction. The Longmen Shan fold-and-thrust belt and its adjacent Sichuan basin located in the eastern margin of Tibetan Plateau, are one of the most-concerned regions of studying modern mountain-building and seismic process, and are also a natural laboratory of studying the dynamics of the formation and development of foreland basin. However, it still need further explore on the mechanics of the development of the Cenozoic foreland basin and thrust-belts in the western Sichuan Basin. The Longmen Shan thrust belt has experienced multi-stages of tectonics evolution, foreland basin formation and topography growth since Late Triassic, and whether the early formed basin architecture and large Mesozoic sedimentary basin taper can influence the formation and development of the Cenozoic foreland basin and thrust belts? To solve these issues, this project aim to focus on the Cenozoic foreland basin and internal crustal shortening structures in the western Sichuan basin, on the basis of growth critical wedge taper theory. We will reconstruct the shape of multi-phases of sedimentary basin tapers, the temporal-spatial distribution of crustal shortening and thrusting sequences, and analyze the control mechanism of Mesozoic sedimentary basin taper on the formation of Cenozoic foreland basins, and final explore the interaction between the tectonics geomorphology, stress field and dynamic propagation of foreland basin.

Biostratigraphy of Cretaceous-Paleogene marine succession, foraminiferal changes across the K/T boundary, sequence stratigraphy and response to sedimentary cyclicity in the Haymana Basin (Central Anatolia, Turkey)

NASA Astrophysics Data System (ADS)

Amirov, Elnur

2016-04-01

The aim of this study is to establish the planktonic foraminiferal biozonation, to construct the sequence stratigraphical framework and to determine the foraminiferal response to sedimentary cyclicity in the sedimentary sequence spanning Upper Cretaceous-Paleocene in the Haymana basin (Central Anatolia, Turkey). In order to achieve this study, the stratigraphic section was measured from sedimentary sequence of the Haymana, Beyobası and Yeşilyurt formations. The sedimentary sequence is mainly characterized by flyschoidal sequence that is composed of alternating of siliciclastic and carbonate units. On the account of the detailed taxonomic study of planktonic foraminifers, the biostratigraphic framework was established for the Maastrichtian-Paleocene interval. The biozonation includes 7 zones; Pseudoguembelina hariaensis, Pα, P1, P2, P3, P4 and P5 zones. The Cretaceous-Paleogene (K/P) boundary was delineated between the samples HEA-105 and 106. In order to construct the sequence-stratigraphical framework, the A, B, C and D-type meter-scale cycles were identified. Based on the stacking patterns of them, six depositional sequences, six third and two second order cycles were determined. Third order cycles coincide with the Global Sea Level Change Curve. On the account of the conducted petrographic analysis sandstone, mudstone, marl, limestone and muddy-limestone lithofacies were recorded in the studied samples. In order to demonstrate the response of foraminifers to cyclicity, quantitative analysis has been carried out by counting the individuals of planktonic, benthonic foraminifers and ostracods. The best response to sedimentary cyclicity was revealed from planktonic foraminifers. The average abundance of planktonic foraminifers increases in the transgressive systems tract and decreases in the highstand systems tract. Foraminifera are the most abundant marine protozoa in the benthic, epipelagic and pelagic realm. Because of the complexity and diversity of habitats

A comparison of sedimentary DNA and pollen from lake sediments in recording vegetation composition at the Siberian treeline.

PubMed

Niemeyer, Bastian; Epp, Laura S; Stoof-Leichsenring, Kathleen R; Pestryakova, Luidmila A; Herzschuh, Ulrike

2017-11-01

Reliable information on past and present vegetation is important to project future changes, especially for rapidly transitioning areas such as the boreal treeline. To study past vegetation, pollen analysis is common, while current vegetation is usually assessed by field surveys. Application of detailed sedimentary DNA (sedDNA) records has the potential to enhance our understanding of vegetation changes, but studies systematically investigating the power of this proxy are rare to date. This study compares sedDNA metabarcoding and pollen records from surface sediments of 31 lakes along a north-south gradient of increasing forest cover in northern Siberia (Taymyr peninsula) with data from field surveys in the surroundings of the lakes. sedDNA metabarcoding recorded 114 plant taxa, about half of them to species level, while pollen analyses identified 43 taxa, both exceeding the 31 taxa found by vegetation field surveys. Increasing Larix percentages from north to south were consistently recorded by all three methods and principal component analyses based on percentage data of vegetation surveys and DNA sequences separated tundra from forested sites. Comparisons of the ordinations using procrustes and protest analyses show a significant fit among all compared pairs of records. Despite similarities of sedDNA and pollen records, certain idiosyncrasies, such as high percentages of Alnus and Betula in all pollen and high percentages of Salix in all sedDNA spectra, are observable. Our results from the tundra to single-tree tundra transition zone show that sedDNA analyses perform better than pollen in recording site-specific richness (i.e., presence/absence of taxa in the vicinity of the lake) and perform as well as pollen in tracing vegetation composition. © 2017 John Wiley & Sons Ltd.

High resolution model studies of transport of sedimentary material in the south-western Baltic

NASA Astrophysics Data System (ADS)

Seifert, Torsten; Fennel, Wolfgang; Kuhrts, Christiane

2009-02-01

The paper presents high resolution model simulations of transport, deposition and resuspension of sedimentary material in the south-western Baltic, based on an upgrade of the sediment transport model described in the work of Kuhrts et al. [Kuhrts, C., Fennel, W., Seifert, T., 2004. Model studies of transport of sedimentary material in the Western Baltic. Journal of Marine Systems 52, 167.]. In the western Baltic, a grid spacing of at least 1 nautical mile is required to resolve the shallow and narrow bathymetry and the associated current patterns. A series of experimental model simulations is carried out with forcing data for the year 1993, which include a sequence of storms in January. Compared to earlier model versions, a more detailed description of potential deposition areas can be provided. The study quantifies the influence of enhanced bottom roughness caused by biological structures, like mussels and worm holes, provides estimates of the regional erosion risks for fine grained sediments, and analyses scenarios of the settling and spreading of material at dumping sites. Although the effects of changed bottom roughness, as derived from more detailed, re-classified sea floor data, are relatively small, the sediment transport and deposition patterns are clearly affected by the variation of the sea bed properties.

Relationships Between Magnetic Susceptibility and Sedimentary Facies Along AL Qahmah, Southern Red Sea Coast

NASA Astrophysics Data System (ADS)

Nabhan, A. I.; Yang, W.

2016-12-01

Facies and magnetic parameters of an arid siliciclastic coast were investigated in Al Qahmah, Saudi Arabia. The purpose of the survey was to map and understand the distribution of magnetic minerals in the different sedimentary facies in a 20-km2 area. Four NW-SE profiles parallel to shoreline and thirty-nine roughly perpendicular NE-SW profiles were measured. Petrographic study of sediment composition and texture of 152 samples was conducted. The coast sediments contain six lithofacies: beach, washover fan, tidal channel, eolian dune, sabkha, and wadi. The high concentration of heavy minerals in beach and dune facies causes high magnetic of susceptibility. Mineral composition of the total fraction in these facies confirms the presence of magnetite and ilmenite. The high values of susceptibility in beach and dune facies are attributed to strong winnowing and wave processes that control the pattern of transport, sorting of magnetic minerals in the beach facies. These minerals are picked up and moved by wind at low tide to form extensive low dune fields near the beach. The results showed that magnetic measurements are a sensitive and fast method, which can be used for studying the distribution of magnetic minerals in the sedimentary facies and help interpret various controlling processes.

Porous media of the Red River Formation, Williston Basin, North Dakota: a possible Sedimentary Enhanced Geothermal System

NASA Astrophysics Data System (ADS)

Hartig, Caitlin M.

2018-01-01

Fracture-stimulated enhanced geothermal systems (EGS) can be developed in both crystalline rocks and sedimentary basins. The Red River Formation (Ordovician) is a viable site for development of a sedimentary EGS (SEGS) because the formation temperatures exceed 140 °C and the permeability is 0.1-38 mD; fracture stimulation can be utilized to improve permeability. The spatial variations of the properties of the Red River Formation were analyzed across the study area in order to understand the distribution of subsurface formation temperatures. Maps of the properties of the Red River Formation-including depth to the top of the formation, depth to the bottom of the formation, porosity, geothermal gradient, heat flow, and temperature-were produced by the Kriging interpolation method in ArcGIS. In the future, these results may be utilized to create a reservoir simulation model of an SEGS in the Red River Formation; the purpose of this model would be to ascertain the thermal response of the reservoir to fracture stimulation.

From dry to saturated thermal conductivity: mixing-model correction charts and new conversion equations for sedimentary rocks

NASA Astrophysics Data System (ADS)

Fuchs, Sven; Schütz, Felina; Förster, Andrea; Förster, Hans-Jürgen

2013-04-01

satisfying. To improve the fit of the models, correction equations are calculated based on the statistical data. In addition, the application of correction equations allows a significant improvement of the accuracy of bulk TC data calculated. However, the "corrected" geometric mean constitutes the only model universally applicable to different types of sedimentary rocks and, thus, is recommended for the calculation of bulk TC. Finally, the statistical analysis also resulted in lithotype-specific conversion equations, which permit a calculation of the water-saturated bulk TC from dry-measured TC and porosity (e.g., well-log-derived porosity). This approach has the advantage that the saturated bulk TC could be calculated readily without application of any mixing model. The expected errors with this approach are in the range between 5 and 10 % (Fuchs et al., 2013).

Rock property measurements and analysis of selected igneous, sedimentary, and metamorphic rocks from worldwide localities

USGS Publications Warehouse

Johnson, Gordon R.

1983-01-01

Dry bulk density and grain density measurements were made on 182 samples of igneous, sedimentary, and metamorphic rocks from various world-wide localities. Total porosity values and both water-accessible and helium-accessible porosities were calculated from the density data. Magnetic susceptibility measurements were made on the solid samples and permeability and streaming potentials were concurrently measured on most samples. Dry bulk densities obtained using two methods of volume determination, namely direct measurement and Archlmedes principle, were nearly equivalent for most samples. Grain densities obtained on powdered samples were typically greater than grain densities obtained on solid samples, but differences were usually small. Sedimentary rocks had the highest percentage of occluded porosity per rock volume whereas metamorphic rocks had the highest percentage of occluded porosity per total porosity. There was no apparent direct relationship between permeability and streaming potential for most samples, although there were indications of such a relationship in the rock group consisting of granites, aplites, and syenites. Most rock types or groups of similar rock types of low permeability had, when averaged, comparable levels of streaming potential per unit of permeability. Three calcite samples had negative streaming potentials.

Cosmogenic Nuclides 10Be-21Ne Burial Dating of Middle Miocene Sedimentary Formation of the Hongliu Valley in Southern Ningxia Basin: A Case of Isotopic Geochronology Study for the Cenozoic Sedimentary Strata

NASA Astrophysics Data System (ADS)

Ma, Y.; Zhang, H.; Wang, W.; Wu, Y.; Pang, J.; Zheng, D.; Li, D.

2015-12-01

Chronology studies for the Cenozoic sedimentary strata based on the magnetostratigraphy cannot afford the unique chronological sequences in the absence of absolute ages from biostratigraphy or volcanic ash chronology. In situ-produced cosmogenic nuclides provide a powerful tool for the sediment dating based on the time-dependent concentration ratio of two nuclides, which are produced in the same mineral but with different half-lives. Thereinto, 10Be-26Al is the most widely used nuclide pairs, of which the available dating range spans the Plio-Pleistocene. But the coupling of 10Be with the stable nuclide 21Ne would significantly improve the burial dating range up to the middle Miocene, which is promising in revolutionizing the chronology study for the Late Cenozoic terrestrial sedimentary sequences. We have applied 10Be-21Ne pair for dating the middle Miocene sediments of the Hongliu Valley in southern Ningxia basin. Two major features of the sediments are involved in our study: (1) sediments originated from the steady erosion of the source area, and (2) the burial depth of our sample after deposition is time dependent due to the gradual accumulation of sediments into basin. The post-burial nuclide production is estimated to be less than 3%, including the contribution by muon interactions, of the total nuclide concentrations measured in our sample. Our 10Be-21Ne analysis demonstrates the age of the burial sample is 12.4(+0.6/-0.4) Ma, and the erosion rate at the source area is 0.26±0.01 cm ka-1. The sample's burial age is consistent with the age constraint set by the Hongliugou Formation (16.7-5.4 Ma) which we collected the sample in. Vertebrate fossils of Platybelodon tongxinensis with an age between 12 and 15 Ma exhumated along with our sample further verifies the reliability of our dating results for the middle Miocene sediments.This study has shown the improved age range of cosmogenic-nuclide burial dating method by incorporating the stable nuclide 21Ne, and

Single measure and gated screening approaches for identifying students at-risk for academic problems: Implications for sensitivity and specificity.

PubMed

Van Norman, Ethan R; Nelson, Peter M; Klingbeil, David A

2017-09-01

Educators need recommendations to improve screening practices without limiting students' instructional opportunities. Repurposing previous years' state test scores has shown promise in identifying at-risk students within multitiered systems of support. However, researchers have not directly compared the diagnostic accuracy of previous years' state test scores with data collected during fall screening periods to identify at-risk students. In addition, the benefit of using previous state test scores in conjunction with data from a separate measure to identify at-risk students has not been explored. The diagnostic accuracy of 3 types of screening approaches were tested to predict proficiency on end-of-year high-stakes assessments: state test data obtained during the previous year, data from a different measure administered in the fall, and both measures combined (i.e., a gated model). Extant reading and math data (N = 2,996) from 10 schools in the Midwest were analyzed. When used alone, both measures yielded similar sensitivity and specificity values. The gated model yielded superior specificity values compared with using either measure alone, at the expense of sensitivity. Implications, limitations, and ideas for future research are discussed. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Morphology and modern sedimentary deposits of the macrotidal Marapanim Estuary (Amazon, Brazil)

NASA Astrophysics Data System (ADS)

Araújo da Silva, Cléa; Souza-Filho, Pedro Walfir M.; Rodrigues, Suzan W. P.

2009-03-01

The northern Brazilian coast, east of the Amazon River is characterized by several macrotidal estuarine systems that harbor large mangrove areas with approximately 7600 km 2. The Marapanim Estuary is influenced by macrotidal regime with moderate waves influence. Morphologic units were investigated by using remote sensing images (i.e., Landsat-7 ETM+, RADARSAT- 1 Wide and SRTM) integrated with bathymetric data. The modern sedimentary deposits were analyzed from 67 cores collected by Vibracore and Rammkersonde systems. Analysis of morphology and surface sedimentary deposits of the Marapanim River reveal they are strongly influenced by the interaction of tidal, wave and fluvial currents. Based on these processes it was possible to recognize three distinct longitudinal facies zonation that revels the geological filling of a macrotidal estuary. The estuary mouth contain fine to medium marine sands strongly influenced by waves and tides, responsible for macrotidal sandy beaches and estuarine channel development, which are characterized by wave-ripple bedding and longitudinal cross-bedding sands. The estuary funnel is mainly influenced by tides that form wide tidal mudflats, colonized by mangroves, along the estuarine margin, with parallel laminations, lenticular bedding, root fragments and organic matter lenses. The upstream estuary contains coarse sand to gravel of fluvial origin. Massive mud with organic matter lenses, marks and roots fragments occur in the floodplain accumulates during seasonal flooding providing a slowly aggrading in the alluvial plain. This morphologic and depositional pattern show easily a tripartite zonation of a macrotidal estuary, that are in the final stage of filling.

Fracture trends identified by ERTS-1 imagery in Utah and Nevada

NASA Technical Reports Server (NTRS)

Jensen, M. L. (Principal Investigator); Smith, M. R.; Rogers, R. J.

1973-01-01

The author has identified the following significant results. Structures clearly traceable through bed rock are considered most reliable. Continuity, however, is frequently traceable through ranges and across adjoining sedimentary basins where changes in drainage, erosion pattern, soil color, or vegetation suggest that the basin sediments are extremely sensitive to underlying structures. Many large and continuous trends, too smeared by erosion to be visible on the ground or from aircraft photos, become quite evident at the scale of the ERTS-1 images. The study was made with little regard for surface geology. The trends have been retraced to separate and unidirectional sets. These are now being related to surface geology, geophysical studies, volcanic and intrusive centers, and areas of mineralization.

Using the Textpresso Site-Specific Recombinases Web server to identify Cre expressing mouse strains and floxed alleles.

PubMed

Condie, Brian G; Urbanski, William M

2014-01-01

Effective tools for searching the biomedical literature are essential for identifying reagents or mouse strains as well as for effective experimental design and informed interpretation of experimental results. We have built the Textpresso Site Specific Recombinases (Textpresso SSR) Web server to enable researchers who use mice to perform in-depth searches of a rapidly growing and complex part of the mouse literature. Our Textpresso Web server provides an interface for searching the full text of most of the peer-reviewed publications that report the characterization or use of mouse strains that express Cre or Flp recombinase. The database also contains most of the publications that describe the characterization or analysis of strains carrying conditional alleles or transgenes that can be inactivated or activated by site-specific recombinases such as Cre or Flp. Textpresso SSR complements the existing online databases that catalog Cre and Flp expression patterns by providing a unique online interface for the in-depth text mining of the site specific recombinase literature.

Origin of New Faculty in Sedimentary Petrology at Ph.D.-Granting Universities in the United States and Canada.

ERIC Educational Resources Information Center

Thornton, Scott E.

1981-01-01

To aid prospective graduate students in sedimentary petrology who wish to teach at colleges or universities, 121 doctoral graduates in this field are traced to their present appointments in higher education. Only 31 percent of these graduates attained this career goal. (Author/WB)

Radiogenic heat production in sedimentary rocks of the Gulf of Mexico Basin, south Texas

USGS Publications Warehouse

McKenna, T.E.; Sharp, J.M.

1998-01-01

Radiogenic heat production within the sedimentary section of the Gulf of Mexico basin is a significant source of heat. Radiogenic heat should be included in thermal models of this basin (and perhaps other sedimentary basins). We calculate that radiogenic heat may contribute up to 26% of the overall surface heat-flow density for an area in south Texas. Based on measurements of the radioactive decay rate of ??-particles, potassium concentration, and bulk density, we calculate radiogenic heat production for Stuart City (Lower Cretaceous) limestones, Wilcox (Eocene) sandstones and mudrocks, and Frio (Oligocene) sandstones and mudrocks from south Texas. Heat production rates range from a low of 0.07 ?? 0.01 ??W/m3 in clean Stuart City limestones to 2.21 ?? 0.24??W/m3 in Frio mudrocks. Mean heat production rates for Wilcox sandstones, Frio sandstones, Wilcox mudrocks, and Frio mudrocks are 0.88, 1.19, 1.50, and 1.72 ??W/m3, respectively. In general, the mudrocks produce about 30-40% more heat than stratigraphically equivalent sandstones. Frio rocks produce about 15% more heat than Wilcox rocks per unit volume of clastic rock (sandstone/mudrock). A one-dimensional heat-conduction model indicates that this radiogenic heat source has a significant effect on subsurface temperatures. If a thermal model were calibrated to observed temperatures by optimizing basal heat-flow density and ignoring sediment heat production, the extrapolated present-day temperature of a deeply buried source rock would be overestimated.Radiogenic heat production within the sedimentary section of the Gulf of Mexico basin is a significant source of heat. Radiogenic heat should be included in thermal models of this basin (and perhaps other sedimentary basins). We calculate that radiogenic heat may contribute up to 26% of the overall surface heat-flow density for an area in south Texas. Based on measurements of the radioactive decay rate of ??-particles, potassium concentration, and bulk density, we

Restoration of original 3D sedimentary geometries in deformed basin fill supporting reservoir characterization

NASA Astrophysics Data System (ADS)

Back, S.

2009-04-01

A large progradational clastic system centred on Brunei Darussalam has been present on the NW Borneo margin since the early middle Miocene. This system has many sedimentary and structural similarities with major deltaic provinces such as the Niger and Nile. It differs from these systems by being affected in the hinterland by contemporaneous compressional tectonics. Uplift partially forced strong progradation of the clastic system, but also folded older deltaic units. Erosion and the exhumation of folded strata in the area of the Jerudong Anticline resulted in the exposure of large-scale prograding clinoforms and syn-sedimentary deltaic faults of middle Miocene age along a natural cross-section of several tens of kilometres in extent. Westward of the key outcrop sites on the Jerudong Anticline, the middle Miocene deltaic units are overlain by late Miocene, Pliocene and Quaternary clastics up to 3 kilometres thick. Both, the middle Miocene target units of this study as well as the late Miocene to recent overburden are recorded in the subsurface of the Belait Syncline on regional 2D seismic lines (total line length around 1400 km) and at 7 well locations. In this study, we integrate the available geophysical subsurface information with existing structural, sedimentological and geomorphological field data of the "classic" Jerudong Anticline exposures (e.g., Back et al. 2001, Morley et al. 2003, Back et al. 2005) into a static 3D surface-subsurface model that provides quantitative constraints on the structural and stratigraphic architecture of the Miocene Belait delta and the overlying units in three dimensions, supporting basin-scale as well as reservoir-scale analysis of the subsurface rock volume. Additionally, we use the static surface-subsurface model as input for a tectonic retro-deformation of the study area, in which the 3D paleo-relief of the middle Miocene Belait delta is restored by unfolding and fault balancing (Back et al. 2008). This kinematic

Mechanisms for Fe(III) oxide reduction in sedimentary environments

USGS Publications Warehouse

Nevin, Kelly P.; Lovely, Derek R.

2002-01-01

Although it was previously considered that Fe(III)-reducing microorganisms must come into direct contact with Fe(III) oxides in order to reduce them, recent studies have suggested that electron-shuttling compounds and/or Fe(III) chelators, either naturally present or produced by the Fe(III)-reducing microorganisms themselves, may alleviate the need for the Fe(III) reducers to establish direct contact with Fe(III) oxides. Studies with Shewanella alga strain BrY and Fe(III) oxides sequestered within microporous beads demonstrated for the first time that this organism releases a compound(s) that permits electron transfer to Fe(III) oxides which the organism cannot directly contact. Furthermore, as much as 450 w M dissolved Fe(III) was detected in cultures of S. alga growing in Fe(III) oxide medium, suggesting that this organism releases compounds that can solublize Fe(III) from Fe(III) oxide. These results contrast with previous studies, which demonstrated that Geobacter metallireducens does not produce electron-shuttles or Fe(III) chelators. Some freshwater aquatic sediments and groundwaters contained compounds, which could act as electron shuttles by accepting electrons from G. metallireducens and then transferring the electrons to Fe(III). However, other samples lacked significant electron-shuttling capacity. Spectroscopic studies indicated that the electron-shuttling capacity of the waters was not only associated with the presence of humic substances, but water extracts of walnut, oak, and maple leaves contained electron-shuttling compounds did not appear to be humic substances. Porewater from a freshwater aquatic sediment and groundwater from a petroleum-contaminated aquifer contained dissolved Fe(III) (4-16 w M), suggesting that soluble Fe(III) may be available as an electron acceptor in some sedimentary environments. These results demonstrate that in order to accurately model the mechanisms for Fe(III) reduction in sedimentary environments it will be necessary

Metal accumulation in soils derived from volcano-sedimentary rocks, Rio Itapicuru Greenstone Belt, northeastern Brazil.

PubMed

Dos Santos, Laíse Milena Ribeiro; Gloaguen, Thomas Vincent; Fadigas, Francisco de Souza; Chaves, Joselisa Maria; Martins, Tamires Moraes Oliveira

2017-12-01

Many countries and some Brazilian regions have defined the guideline values for metals in soils. However, the local geological features may be so heterogeneous that global or even regional guideline values cannot be applied. The Greenstone Belts are worldwide geological formations of vast extension, containing mineralization of various metals (e.g., Au, Cr, Ni, and Ag). Natural concentrations of soils must be known to correctly assess the impact of mining. We studied the soils of the Rio Itapicuru Greenstone Belt (RIGB), of Paleoproterozoic age, sampling at 24 sites (0-0.20m) in the areas not or minimally human impacted, equally distributed in the three units of the RIGB: Volcanic Mafic Unit (VMU), Volcanic Felsic Unit (VFU), and Volcano-clastic Sedimentary Unit (SU). The natural pseudo-total concentrations of Cr, Ni, Cu, Zn, Pb, Fe, and Mn were obtained by acid digestion (EPA3050b) both in the soil and the particle-size fractions (sand and clay+silt). The concentrations of metals in RIGB soils, especially Cr and Ni, are generally higher than those reported for other regions of Brazil or other countries. Even the sedimentary soils have relatively high metal values, naturally contaminated by the VMU of the RIGB; a potential impact on Mesozoic and Cenozoic sedimentary rocks located near the study region is highly expected. Metals are concentrated (80%) in the fine particle-size fraction, implying an easy availability through surface transport (wind and runoff). We introduced a new index, called the Fe-independent accumulation factor - AF -Fe , which reveals that 90-98% of the dynamics of the trace metals is associated with the iron geochemical cycle. We primarily conclude that determining the guideline values for different soil classes in variable geological/geochemical environment and under semiarid climate is meaningless: the concentration of metals in soils is clearly more related to the source material than to the pedogenesis processes. Copyright © 2017 Elsevier

Flexure and faulting of sedimentary host rocks during growth of igneous domes, Henry Mountains, Utah

USGS Publications Warehouse

Jackson, M.D.; Pollard, D.D.

1990-01-01

A sequence of sedimentary rocks about 4 km thick was bent, stretched and uplifted during the growth of three igneous domes in the southern Henry Mountains. Mount Holmes, Mount Ellsworth and Mount Hillers are all about 12 km in diameter, but the amplitudes of their domes are about 1.2, 1.85 and 3.0 km, respectively. These mountains record successive stages in the inflation of near-surface diorite intrusions that are probably laccolithic in origin. The host rocks deformed along networks of outcrop-scale faults, or deformation bands, marked by crushed grains, consolidation of the porous sandstone and small displacements of sedimentary beds. Zones of deformation bands oriented parallel to the beds and formation contacts subdivided the overburden into thin mechanical layers that slipped over one another during doming. Measurements of outcrop-scale fault populations at the three mountains reveal a network of faults that strikes at high angles to sedimentary beds which themselves strike tangentially about the domes. These faults have normal and reverse components of slip that accommodated bending and stretching strains within the strata. An early stage of this deformation is displayed at Mount Holmes, where states of stress computed from three fault samples correlate with the theoretical distribution of stresses resulting from bending of thin, circular, elastic plates. Field observations and analysis of frictional driving stresses acting on horizontal planes above an opening-mode dislocation, as well as the paleostress analysis of faulting, indicate that bedding-plane slip and layer flexure were important components of the early deformation. As the amplitude of doming increased, radial and circumferential stretching of the strata and rotation of the older faults in the steepening limbs of the domes increased the complexity of the fault patterns. Steeply-dipping, map-scale faults with dip-slip displacements indicate a late-stage jostling of major blocks over the central

The volcanic-sedimentary sequence of the Lousal deposit, Iberian Pyrite Belt (Portugal)

NASA Astrophysics Data System (ADS)

Rosa, Carlos; Rosa, Diogo; Matos, Joao; Relvas, Jorge

2010-05-01

dominant fragmentation mechanism. Unlike many locations of the IPB, fiamme-rich pyroclastic units were not identified at Lousal. The ore deposits occur in close proximity with this volcanic centre that may have driven hydrothermal circulation that led to ore formation. The volcanic rocks show intense chloritic alteration, indicating that the mineralizing event occurred after most of the rhyolitic units have emplaced. The massive sulfides show abundant sedimentary structures which is not typical in the massive sulfide deposits of the IPB. The Lousal 50 Mt massive sulfide deposit consists of at least 11 ore bodies and was exploited until 1988 mainly for pyrite. The ores mined averaged 0.7% Cu, 0.8%Pb e 1.4%Zn (Strauss, 1971). These relatively low base metal grades led to an evaluation of the contents and distribution of high-tech element in the ore bodies, which would improve the economic viability of mining the deposit. This evaluation is currently focusing on the distribution and mineralogy of selenium, as ores mined in the past were known to be rich in this element. This work benefits from research projects INCA (PTDC/CTE-GIN/67027/2006; Characterization of crucial mineral resources for the development of renewable energy technologies: The Iberian Pyrite Belt ores as a source of indium and other high-technology elements) and project ARCHYMEDES II (POCTI/CTA/45873/2002), both funded by the Fundação para a Ciência e Tecnologia. REFERENCES Strauss, G.K., 1970. Sobre la geologia de la provincia piritifera del Suroeste de la Peninsula Iberica y sus yacimientos, en especial sobre la mina de pirita de Lousal (Portugal): Memoria del IGME 77, 1-266. Tornos, F., 2006. Environment of formation and styles of volcanogenic massive sulfides: The Iberian Pyrite Belt. Ore Geology Reviews 28, 259-307.

A multi-proxy approach to identifying short-lived marine incursions in the Early Carboniferous

NASA Astrophysics Data System (ADS)

Bennett, Carys; Davies, Sarah; Leng, Melanie; Snelling, Andrea; Millward, David; Kearsey, Timothy; Marshall, John; Reves, Emma

2015-04-01

This study is a contribution to the TW:eed Project (Tetrapod World: early evolution and diversification), which examines the rebuilding of Carboniferous ecosystems following a mass extinction at the end of the Devonian. The project focuses on the Tournaisian Ballagan Formation of Scotland and the Borders, which contains rare fish and tetrapod material. The Ballagan Formation is characterised by sandstones, dolomitic cementstones, paleosols, siltstones and gypsum deposits. The depositional environment ranges from fluvial, alluvial-plain to marginal-marine environments, with fluvial, floodplain and lacustrine deposition dominant. A multi-proxy approach combining sedimentology, palaeontology, micropalaeontology, palynology and geochemistry is used to identify short-lived marine transgressions onto the floodplain environment. Rare marginal marine fossils are: Chondrites-Phycosiphon, Spirorbis, Serpula, certain ostracod species, rare orthocones, brachiopods and putative marine sharks. More common non-marine fauna include Leiocopida and Podocopida ostracods, Mytilida and Myalinida bivalves, plants, eurypterids, gastropods and fish. Thin carbonate-bearing dolomitic cementstones and siltstone contain are the sedimentary deposits of marine incursions and occur throughout the formation. Over 600 bulk carbon isotope samples were taken from the 500 metre thick Norham Core (located near Berwick-Upon-Tweed), encompassing a time interval of around 13 million years. The results range from -26o to -19 δ13Corg, with an average of -19o much lighter than the average value for Early Carboniferous marine bulk organic matter (δ13C of -28 to -30). The isotope results correspond to broad-scale changes in the depositional setting, with more positive δ13C in pedogenic sediments and more negative δ13C in un-altered grey siltstones. They may also relate to cryptic (short-lived) marine incursions. A comparison of δ13C values from specific plant/wood fragments, palynology and bulk

Glacimarine Sedimentary Processes and Deposits at Fjord-Terminating Tidewater Glacier Margins

NASA Astrophysics Data System (ADS)

Streuff, K.; O'Cofaigh, C.; Lloyd, J. M.; Noormets, R.; Nielsen, T.; Kuijpers, A.

2016-12-01

Many fjords along Arctic coasts are influenced by tidewater glaciers, some of them fast-flowing ice sheet outlets. Such glaciers provide important links between terrestrial and marine environments, and, due to their susceptibility to climatic and oceanographic changes, have undergone a complex history of advance and retreat since the last glacial maximum (LGM). Although a growing body of evidence has led to a better understanding of the deglacial dynamics of individual glaciers since the LGM, their overall Holocene glacimarine processes and associated sedimentary and geomorphological products often remain poorly understood. This study addresses this through a detailed analysis of sediment cores, swath bathymetric and sub-bottom profiler data collected from seven fjords in Spitsbergen and west Greenland. The sediment cores preserve a complex set of lithofacies, which include laminated and massive muds in ice-proximal, and bioturbated mud in more ice-distal settings, diamicton in iceberg-dominated areas and massive sand occurring as lenses, laminae and thick beds. These facies record the interplay of three main glacimarine processes, suspension settling, iceberg rafting and sediment gravity flows, and collectively emphasise the dominance of glacial meltwater delivery to sedimentation in high Arctic fjords. The seafloor geomorphology in the fjords shows a range of landforms that include glacial lineations associated with fast ice-flow, terminal moraines and debris lobes marking former maximum glacier extents, and small transverse moraines formed during deglaciation by glaciotectonic deformation at the grounding line and crevasse-squeezing. Additional landforms such as iceberg ploughmarks, submarine channels, pockmarks, and debris lobes formed during or after deglaciation by iceberg calving, erosion by meltwater, and sediment reworking. We present here a new model for sedimentary and geomorphological processes in front of contemporary tidewater glaciers, which

Is Dam Removal a Benefit for Environment? Input of Sedimentary Archives

NASA Astrophysics Data System (ADS)

Debret, M.; Laberdesque, Y.; Patault, E.; Copard, Y.; Koltalo, F.; Marcotte, S.; Sabatier, P.; Develle, A. L.; Chaumillon, E.; Coulombier, T.; Deloffre, J.; Fournier, M.; Landemaine, V.; Laignel, B.; Desmet, M.

2016-12-01

In October 2015, the scientific news EOS entitled: « Contaminated sediment and dam removal: problem or opportunity? ». This title clearly highlights the problems that societies of every country are facing: many dam are about to exceed their engineered life expectancies and large quantities of contaminated sediments are stored by theses structures. Moreover in Europe, since the 2000s, the European legislative and regulatory framework highlights the consideration of the morphological operation for hydro-systems. The objective of achieving good ecological status of waters by 2015 brings watershed management authorities to consider the removal of dams to restore the free movement of sediment. But until now, the impacts associated with the removal of structures are poorly studied. The Martot dam, chosen in this study is located on the Eure River (Seine river tributary, north of France). It is an ideal case study, because its coming destruction, for ecological continuity restoration, is a "priority" and a large quantity of contaminated sediments is supposed to be stored upstream, related to high industrial concentration since decades. We investigated the evolution of the hydro-sedimentary transfers on the watershed of the Eure River and determined the nature of the contaminants stored in the sediments that are subject to be remobilized after the dam removal. To achieve these goals, we reconstructed the Eure catchment area history by studying seismic profiles, in-situt high frequency monitoring (since 2 years: flow, electrical conductivity, temperrature, turbidity, suspended particulate matter concentration) and sedimentary cores. Then, the nature, origin and timing of pollutants stored in the Eure sediments were determined. The next step will be to evaluate their bio-accessibility and the danger for trophic chain and evaluate if the removal was a benefit or problem for environment.

Tertiary sedimentary history and structure of the Valencia trough (western Mediterranean)

NASA Astrophysics Data System (ADS)

Maillard, A.; Mauffret, A.; Watts, A. B.; Torné, M.; Pascal, G.; Buhl, P.; Pinet, B.

1992-03-01

We present here main results of the Common Depth Point (CDP) data acquired during the Valsis 2 Cruise in 1988 in the Valencia trough. The profiles are tied in with industrial well data and this correlation allows the sedimentary and structural history of the region to be deduced. The Valsis Cruise seismic profiles have been supplemented by a very dense grid of industrial seismic lines and these data permit us to establish an accurate depth to basement map. The formation of the initial grabens, coeval with those of the Gulf of Lions, is related to the Early Miocene opening of the northwestern Mediterranean basin and the Barcelona graben is filled by the same sedimentary layers, including evaporites, as that of the Provençal region. Nevertheless, the Valencia-Catalan grabens have been reactivated by young extensional tectonics which could be a consequence of the convergence of Africa relative to Europe. The Valencia trough is segmented by transfer faults which trend NW-SE. These faults, which have a more accentuated structural expression than the Valencia and Catalonia grabens, may act as transform faults separating the individual Balearic Islands. The transfer faults are in strike with volcanic ridges which have been sampled during the DSDP Leg 13. The dense seismic grid allows us to delineate several widespread volcanic features in the Valencia trough which have been active from the Early Miocene to the Pleistocene. However, we note that the volcanic features are mainly Miocene in age whereas the recent volcanism is restricted to a narrow zone (Columbretes Islands). The compressional tectonics which deformed the Balearic Islands does not appear to extend far towards the North. We delineate the compressional front north of Ibiza, but we failed to determine any thrust or fold north of Mallorca, whereas an extensional tectonics is evident.

Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.

PubMed

Polimanti, Renato; Zhao, Hongyu; Farrer, Lindsay A; Kranzler, Henry R; Gelernter, Joel

2017-12-01

We previously mapped loci for the genome-wide association studies (GWAS) and genome-wide gene-by-alcohol dependence interaction (GW-GxAD) analyses of risky sexual behaviors (RSB). This study extends those findings by analyzing the ancestry- and sex-specific AD-stratified effects on RSB. We examined the concordance of findings for the AD-stratified GWAS and the GW-GxAD analysis of RSB, with concordance defined as genome-wide significance in one analysis and at least nominal significance in the second analysis. A total of 2,173 African-American (AA) and 1,751 European-American (EA) subjects were investigated. Information regarding RSB (lifetime experiences of unprotected sex and multiple sexual partners) and DSM-IV diagnosis of lifetime AD were derived from the Semi-Structured Assessment for Drug Dependence and Alcoholism (SSADDA). In our ancestry- and sex-specific analyses, we identified four independent genome-wide significant (GWS) loci (p < 5*10 -8 ) and one suggestive locus (p < 6*10 -8 ). In men, we observed a GWS signal in FAM162A (rs2002594, p = 4.96*10 -8 ). In women, there was a suggestive locus in PLGRKT (rs3824435, p = 5.52*10 -8 ). In AAs, there was a GWS signal in GRK5 (rs1316543, p = 1.25*10 -9 ). In AA men, we observed an intergenic GWS signal (rs12898370, p = 4.49*10 -8 ) near LINGO1. In EA men, there was a GWS signal in CCSER1 (rs62313897; p = 7.93*10 -10 ). The loci identified in this GWAS implicate molecular mechanisms related to psychiatric illness and personality features, suggesting that the interplay between AD and RSB is mediated by alleles associated with behavioral traits. © 2017 Wiley Periodicals, Inc.

The analysis of forms of sulfur in ancient sediments and sedimentary rocks: comments and cautions

USGS Publications Warehouse

Rice, C.A.; Tuttle, M.L.; Reynolds, R.L.

1993-01-01

Assumptions commonly made during analysis of the amount of monosulfides [acid-volatile sulfides (AVS)] and disulfides in modern sediments, may not be valid for ancient sedimentary rocks. It is known that ferric iron can oxidize H2S during AVS analysis unless a reducing agent such as stannous chloride is added to the treatment. In addition, some monosulfides such as greigite and pyrrhotite require heat during the AVS analysis in order to dissolve completely. However, the use of heat and/or stannous chloride in the AVS treatment may partially dissolve disulfides and it is generally recommended that stannous chloride not be used in the AVS treatment for modern sediments. Most of the monosulfides are assumed to be recovered as AVS without the addition of stannous chloride. This study investigates the recovery of monosulfides during sulfur speciation analysis with application to ancient sedimentary rocks. Sulfur in samples containing naturally occurring greigite and mackinawite or pyrite was measured using variations of a common sulfur-speciation scheme. The sulfur-speciation scheme analyzes for monosulfide sulfur, disulfide sulfur, elemental sulfur, inorganic sulfate and organically bound sulfur. The effects of heat, stannous chloride and ferric iron on the amounts of acid-volatile sulfide and disulfide recovered during treatment for AVS were investigated. Isotopic compositions of the recovered sulfur species along with yields from an extended sulfur-speciation scheme were used to quantify the effects. Hot 6 N HCl AVS treatment recovers > 60% of the monosulfides as AVS in samples containing pure greigite and mackinawite. The remaining monosulfide sulfur is recovered in a subsequent elemental sulfur extraction. Hot 6 N HCl plus stannous chloride recovers 100% of the monosulfides as AVS. The addition of ferric iron to pure greigite and mackinawite samples during AVS treatment without stannous chloride decreased the amount of monosulfides recovered as AVS and, if present

Multidecadal oscillations in past Baltic Sea hypoxia: the role of sedimentary iron-phosphorus feedbacks

NASA Astrophysics Data System (ADS)

Jilbert, Tom; Gustafsson, Bo G.; Veldhuijzen, Simon; Reed, Daniel C.; van Helmond, Niels A. G. M.; Slomp, Caroline P.

2017-04-01

The Baltic Sea currently experiences widespread deep-water hypoxia, a consequence of both anthropogenic nutrient loading and the natural susceptibility of its stratified water column to oxygen depletion. Sediment core records show that hypoxia was also prevalent in the Baltic during the Holocene Thermal Maximum (HTM) and Medieval Climate Anomaly (MCA). Sedimentary iron (Fe) and phosphorus (P) dynamics are known to play a key role in determining the intensity of Baltic Sea hypoxia through time. Rapid intensification of hypoxia at the onset of past centennial-scale hypoxic events during the HTM and MCA has been explained by release of P from sedimentary Fe oxides, leading to enhanced primary productivity and deep water oxygen consumption (Jilbert and Slomp, 2013). Similarly, rapid relief from hypoxia at the termination of these events reflects efficient trapping of P by Fe oxides as oxic conditions expand. Here we show that within past hypoxic events in the Baltic Sea, hypoxia intensity also varied continuously on multidecadal timescales. We observe persistent oscillations in new high-resolution records of sediment redox proxies derived from Laser Ablation (LA) ICP-MS analysis. In-phase multidecadal oscillations in molybdenum/aluminium (Mo/Al), bromine/phosphorus (Br/P) and Fe/Al indicate coupling between redox conditions, the flux of carbon to the seafloor, and mobilization of Fe in shelf areas, respectively. Using a simple box model, we show that instabilities in the response of sedimentary P release to changing oxygen concentrations and carbon flux were the likely cause of the observed oscillations. When prescribing a non-linear relationship between P release, oxygen concentration and carbon flux, and forcing the model with external P loadings typical of the HTM and MCA, the simulated time-series of deep-water oxygen show pronounced oscillations similar to those observed in the sediment records. However, when external P loads typical of the modern anthropogenic

Sedimentary record of seismic events in the Eocene Green River Formation and its implications for regional tectonics on lake evolution (Bridger Basin, Wyoming)

NASA Astrophysics Data System (ADS)

Törő, Balázs; Pratt, Brian R.

2016-10-01

Outcrops and cores from the top of the lacustrine Tipton Member and the base of the Wilkins Peak Member ( 51.5 Ma) of the Eocene Green River Formation, Bridger Basin in southwestern Wyoming yield a wide variety of sedimentary deformation features many of which are laterally extensive for more than 50 km. They include various types of folds, load structures, pinch-and-swell structures, microfaults, breccias and sedimentary dikes. In most cases deformation is represented by hybrid brittle-ductile structures exhibiting lateral variation in deformation style. These occur in low-energy, profundal organic-rich carbonate mudstones (oil shales), trona beds, tuffs, and profundal to sublittoral silty carbonate deposited in paleolake Gosiute. The deformation is not specific to the depositional environment because sedimentary units stratigraphically higher with similar facies show no deformation. The studied interval lacks any evidence for possible trigger mechanisms intrinsic to the depositional environment, such as strong wave action, rapid sediment loading, evaporite dissolution and collapse, or desiccation, so 'endogenic' causes are ruled out. Thus, the deformation features are interpreted as seismites, and change in deformation style and inferred increase in intensity towards the south suggest that the earthquakes were sourced from the nearby Uinta Fault System. The 22 levels exhibiting seismites recognized in cores indicate earthquakes with minimum magnitudes between 6 and 7, minimum epicentral intensity (MCS) of 9, and varying recurrence intervals in the seismic history of the Uinta Fault System, with a mean apparent recurrence period of 8.1 k.y. using average sedimentation rates and dated tuffs; in detail, however, there are two noticeably active periods followed by relative quiescence. The stratigraphic position of these deformed intervals also marks the transition between two distinct stages in lake evolution, from the balanced-filled Tipton Member to the overlying

Middle to Upper Jurassic sedimentary sequences and marine biota of the early Indian Ocean (Southwest Madagascar): some biostratigraphic, palaeoecologic and palaeobiogeographic conclusions

NASA Astrophysics Data System (ADS)

Mette, Wolfgang

2004-03-01

As part of an intradisciplinary project which was concerned with the early rifting processes between Madagascar and East Africa, the Middle to Upper Jurassic sedimentary sequences of the Morondava Basin in Southwest Madagascar has been investigated with respect to biostratigraphy, sedimentary facies and palaeoecology. The transgressive sedimentary sections in the Bajocian and Callovian-Oxfordian yield rich macro- and microfossil assemblages which improved the biostratigraphic framework and gave some important information about the palaeoenvironments. Palaeogeographic distribution patterns of the Bajocian ostracod Paradoxorhyncha are suggestive of a migration along the southern shores of Gondwana between Madagascar, Australia and South America. The Callovian ostracods show strong affinities to the Indian faunas, indicating existence of a free migration route for shallow marine benthic organisms between Madagascar and India. Significant faunal differences between Madagascar and Tanzania suggest a physical or environmental migration barrier between Madagascar and East Africa during the Callovian to Kimmeridgian interval. The Upper Jurassic ostracods from the northern and eastern margin of Gondwana show a very high degree of endemism and they can be assigned to two faunal provinces in North Gondwana (Arabia, Near East, North Africa) and South Gondwana (India, Madagascar, East Africa).

Accumulation of sedimentary photosynthetic pigments characterized by pyropheophorbide a and steryl chlorin esters (SCEs) in a shallow eutrophic coastal lake (Lake Hamana, Japan)

NASA Astrophysics Data System (ADS)

Itoh, Nobuyasu; Tani, Yukinori; Soma, Yuko; Soma, Mitsuyuki

2007-01-01

We investigated the factors controlling the composition of sedimentary photosynthetic pigments in Lake Hamana (Japan), a shallow (12 m), brackish, holomictic lake, by analyzing photosynthetic pigments and the sterol composition of steryl esters of pyropheophorbide a (steryl chlorin esters, SCEs) in the water column and surface sediments. The mean annual composition of carotenoids in the water was quite different from that in the surface sediments. We evaluated the relative accumulation efficiency of individual pigments in the sediments by comparing ratios of individual pigment concentrations relative to total chlorophyll a (TChl- a) in sediment to those in the water column. The relative accumulation efficiencies decreased in the following order: lutein > diatoxanthin > β,β-carotene > zeaxanthin > β,ɛ-carotene > alloxanthin ≫ fucoxanthin. The ratio of total pyro-derivatives of chlorophyll a, formed through the grazing of algae by zooplankton, to TChl- a in the surface sediments was much higher (0.24-0.33) than that in the water column, which was less than 0.03 even in the deepest water (10 m). The summed concentration of pyropheophytin a and SCEs (TPyphe- a) showed positive and significant relationships ( r2 > 0.56, n = 7) with residual carotenoids in sediments. These results suggest that incorporation of algal pigments in fecal pellets through grazing by zooplankton enhances pigment preservation during early diagenesis at the sediment surface. Moreover, sedimentary carotenoid compositions were consistent with the sterol compositions of sedimentary SCE fractions. Selective grazing by zooplankton was thus a primary factor determining the composition of sedimentary carotenoids in this lake.

Testing Urey's carbonate-silicate cycle using the calcium isotopic composition of sedimentary carbonates

NASA Astrophysics Data System (ADS)

Blättler, Clara L.; Higgins, John A.

2017-12-01

Carbonate minerals constitute a major component of the sedimentary geological record and an archive of a fraction of the carbon and calcium cycled through the Earth's surface reservoirs for over three billion years. For calcium, carbonate minerals constitute the ultimate sink for almost all calcium liberated during continental and submarine weathering of silicate minerals. This study presents >500 stable isotope ratios of calcium in Precambrian carbonate sediments, both limestones and dolomites, in an attempt to characterize the isotope mass balance of the sedimentary carbonate reservoir through time. The mean of the dataset is indistinguishable from estimates of the calcium isotope ratio of bulk silicate Earth, consistent with the Urey cycle being the dominant mechanism exchanging calcium among surface reservoirs. The variability in bulk sediment calcium isotope ratios within each geological unit does not reflect changes in the global calcium cycle, but rather highlights the importance of local mineralogical and/or diagenetic effects in the carbonate record. This dataset demonstrates the potential for calcium isotope ratios to help assess these local effects, such as the former presence of aragonite, even in rocks with a history of neomorphism and recrystallization. Additionally, 29 calcium isotope measurements are presented from ODP (Ocean Drilling Program) Site 801 that contribute to the characterization of altered oceanic crust as an additional sink for calcium, and whose distinct isotopic signature places a limit on the importance of this subduction flux over Earth history.

Lower Cretaceous paleo-Vertisols and sedimentary interrelationships in stacked alluvial sequences, Utah, USA

NASA Astrophysics Data System (ADS)

Joeckel, R. M.; Ludvigson, G. A.; Kirkland, J. I.

2017-11-01

The Yellow Cat Member of the Cedar Mountain Formation in Poison Strip, Utah, USA, consists of stacked, erosionally bounded alluvial sequences dominated by massive mudstones (lithofacies Fm) with paleo-Vertisols. Sediment bodies within these sequences grade vertically and laterally into each other at pedogenic boundaries, across which color, texture, and structures (sedimentary vs. pedogenic) change. Slickensides, unfilled (sealed) cracks, carbonate-filled cracks, and deeper cracks filled with sandstone; the latter features suggest thorough desiccation during aridification. Thin sandstones (Sms) in some sequences, typically as well as laminated to massive mudstones (Flm) with which they are interbedded in some cases, are interpreted as avulsion deposits. The termini of many beds of these lithofacies curve upward, parallel to nearby pedogenic slickensides, as the features we call ;turnups.; Turnups are overlain or surrounded by paleosols, but strata sheltered underneath beds with turnups retain primary sedimentary fabrics. Turnups were produced by movement along slickensides during pedogenesis, by differential compaction alongside pre-existing gilgai microhighs, or by a combination of both. Palustrine carbonates (lithofacies C) appear only in the highest or next-highest alluvial sequences, along with a deep paleo-Vertisol that exhibits partially preserved microrelief at the base of the overlying Poison Strip Member. The attributes of the Yellow Cat Member suggest comparatively low accommodation, slow accumulation, long hiatuses in clastic sedimentation, and substantial time intervals of subaerial exposure and pedogenesis; it appears to be distinct among the members of the Cedar Mountain Formation in these respects.

Exome chip meta-analysis identifies novel loci and East Asian-specific coding variants that contribute to lipid levels and coronary artery disease.

PubMed

Lu, Xiangfeng; Peloso, Gina M; Liu, Dajiang J; Wu, Ying; Zhang, He; Zhou, Wei; Li, Jun; Tang, Clara Sze-Man; Dorajoo, Rajkumar; Li, Huaixing; Long, Jirong; Guo, Xiuqing; Xu, Ming; Spracklen, Cassandra N; Chen, Yang; Liu, Xuezhen; Zhang, Yan; Khor, Chiea Chuen; Liu, Jianjun; Sun, Liang; Wang, Laiyuan; Gao, Yu-Tang; Hu, Yao; Yu, Kuai; Wang, Yiqin; Cheung, Chloe Yu Yan; Wang, Feijie; Huang, Jianfeng; Fan, Qiao; Cai, Qiuyin; Chen, Shufeng; Shi, Jinxiu; Yang, Xueli; Zhao, Wanting; Sheu, Wayne H-H; Cherny, Stacey Shawn; He, Meian; Feranil, Alan B; Adair, Linda S; Gordon-Larsen, Penny; Du, Shufa; Varma, Rohit; Chen, Yii-Der Ida; Shu, Xiao-Ou; Lam, Karen Siu Ling; Wong, Tien Yin; Ganesh, Santhi K; Mo, Zengnan; Hveem, Kristian; Fritsche, Lars G; Nielsen, Jonas Bille; Tse, Hung-Fat; Huo, Yong; Cheng, Ching-Yu; Chen, Y Eugene; Zheng, Wei; Tai, E Shyong; Gao, Wei; Lin, Xu; Huang, Wei; Abecasis, Goncalo; Kathiresan, Sekar; Mohlke, Karen L; Wu, Tangchun; Sham, Pak Chung; Gu, Dongfeng; Willer, Cristen J

2017-12-01

Most genome-wide association studies have been of European individuals, even though most genetic variation in humans is seen only in non-European samples. To search for novel loci associated with blood lipid levels and clarify the mechanism of action at previously identified lipid loci, we used an exome array to examine protein-coding genetic variants in 47,532 East Asian individuals. We identified 255 variants at 41 loci that reached chip-wide significance, including 3 novel loci and 14 East Asian-specific coding variant associations. After a meta-analysis including >300,000 European samples, we identified an additional nine novel loci. Sixteen genes were identified by protein-altering variants in both East Asians and Europeans, and thus are likely to be functional genes. Our data demonstrate that most of the low-frequency or rare coding variants associated with lipids are population specific, and that examining genomic data across diverse ancestries may facilitate the identification of functional genes at associated loci.

Use of laboratory simulated pyrolysis in tracing the history of sedimentary organic matter

NASA Technical Reports Server (NTRS)

Kaplan, I. R.; Tannenbaum, E.; Huizinga, B. E.

1986-01-01

Results from laboratory simulated pyrolyses experiments show that in addition to depth of burial, preservation of kerogen, and hence any morphologic structure in it, is also dependent on the mineral matrix with which it is associated. In the presence of clay minerals, and especially under dry conditions, extractable lipids released during kerogen decomposition are more rapidly destroyed than in the presence of calcite or chert matrices. The result is production of gas, polar bitumen and pyrobitumen and destruction of biomarkers. During such an early reorganization of the kerogen, the biomarker constituents can be destroyed, or unrecognizably altered. The above process of organic residues maturation appears to be inhibited in the presence of water and is significantly reduced where kerogen is hosted in limestones, dolomites or cherts. These minerals have been characteristically found to be the most reliable in yielding morphological fossils and small quantities of extractable bitumen in Archean and Proterozoic rocks. To understand the validity of chemical and morphological fossils, in the early geologic record, it will be necessary to understand the process of kerogen in sedimentary rocks. To test the role of various minerals on the preservation process, kerogen extracted from a variety of rocks has been heated together with montmorillonite, illite and calcite. The kinetics of the process has been monitored and the products quantitatively identified.

Architecture of buried reverse fault zone in the sedimentary basin: A case study from the Hong-Che Fault Zone of the Junggar Basin

NASA Astrophysics Data System (ADS)

Liu, Yin; Wu, Kongyou; Wang, Xi; Liu, Bo; Guo, Jianxun; Du, Yannan

2017-12-01

It is widely accepted that the faults can act as the conduits or the barrier for oil and gas migration. Years of studies suggested that the internal architecture of a fault zone is complicated and composed of distinct components with different physical features, which can highly influence the migration of oil and gas along the fault. The field observation is the most useful methods of observing the fault zone architecture, however, in the petroleum exploration, what should be concerned is the buried faults in the sedimentary basin. Meanwhile, most of the studies put more attention on the strike-slip or normal faults, but the architecture of the reverse faults attracts less attention. In order to solve these questions, the Hong-Che Fault Zone in the northwest margin of the Junggar Basin, Xinjiang Province, is chosen for an example. Combining with the seismic data, well logs and drill core data, we put forward a comprehensive method to recognize the internal architectures of buried faults. High-precision seismic data reflect that the fault zone shows up as a disturbed seismic reflection belt. Four types of well logs, which are sensitive to the fractures, and a comprehensive discriminated parameter, named fault zone index are used in identifying the fault zone architecture. Drill core provides a direct way to identify different components of the fault zone, the fault core is composed of breccia, gouge, and serpentinized or foliated fault rocks and the damage zone develops multiphase of fractures, which are usually cemented. Based on the recognition results, we found that there is an obvious positive relationship between the width of the fault zone and the displacement, and the power-law relationship also exists between the width of the fault core and damage zone. The width of the damage zone in the hanging wall is not apparently larger than that in the footwall in the reverse fault, showing different characteristics with the normal fault. This study provides a

Channel Formation in Physical Experiments: Examples from Deep and Shallow Water Clastic Sedimentary Systems

NASA Astrophysics Data System (ADS)

Hoyal, D. C.; Sheets, B. A.

2005-12-01

The degree to which experimental sedimentary systems form channels has an important bearing on their applicability as analogs of large-scale natural systems, where channels and their associated landforms are ubiquitous. The internal geometry and properties (e.g., grain size, vertical succession and stacking) of many depositional landforms can be directly linked to the processes of channel initiation and evolution. Unfortunately, strong self-channelization, a prerequisite for certain natural phenomena (e.g. mouth lobe development, meandering, etc.), has been difficult to reproduce at laboratory scales. In shallow-water experiments (sub-aerial), although weak channelization develops relatively easily, as is commonly observed in gutters after a rain storm, strong channelization with well-developed banks has proved difficult to model. In deep water experiments the challenge is even greater. Despite considerable research effort experimental conditions for deep water channel initiation have only recently been identified. Experiments on the requisite conditions for channelization in shallow and deep water have been ongoing at the ExxonMobil Upstream Research Company (EMURC) for several years. By primarily manipulating the cohesiveness of the sediment supply we have developed models of distributive systems with well-defined channels in shallow water, reminiscent of fine grained river-dominated deltas like the Mississippi. In deep water we have developed models that demonstrate strong channelization and associated lobe behavior in a distributive setting, by scaling up an approach developed by another group using salt-water flows and low-density plastic sediment. The experiments highlight a number of important controls on experimental channel formation, including: (1) bed strength or cohesiveness; (2) bedform development; and (3) Reynolds number. Among these controls bed forms disrupt the channel forming instability, reducing the energy available for channelization. The

Genome-wide Association Study Identifies African-Specific Susceptibility Loci in African Americans with Inflammatory Bowel Disease

PubMed Central

Brant, Steven R.; Okou, David T.; Simpson, Claire L.; Cutler, David J.; Haritunians, Talin; Bradfield, Jonathan P.; Chopra, Pankaj; Prince, Jarod; Begum, Ferdouse; Kumar, Archana; Huang, Chengrui; Venkateswaran, Suresh; Datta, Lisa W.; Wei, Zhi; Thomas, Kelly; Herrinton, Lisa J.; Klapproth, Jan-Micheal A.; Quiros, Antonio J.; Seminerio, Jenifer; Liu, Zhenqiu; Alexander, Jonathan S.; Baldassano, Robert N.; Dudley-Brown, Sharon; Cross, Raymond K.; Dassopoulos, Themistocles; Denson, Lee A.; Dhere, Tanvi A.; Dryden, Gerald W.; Hanson, John S.; Hou, Jason K.; Hussain, Sunny Z.; Hyams, Jeffrey S.; Isaacs, Kim L.; Kader, Howard; Kappelman, Michael D.; Katz, Jeffry; Kellermayer, Richard; Kirschner, Barbara S.; Kuemmerle, John F.; Kwon, John H.; Lazarev, Mark; Li, Ellen; Mack, David; Mannon, Peter; Moulton, Dedrick E.; Newberry, Rodney D.; Osuntokun, Bankole O.; Patel, Ashish S.; Saeed, Shehzad A.; Targan, Stephan R.; Valentine, John F.; Wang, Ming-Hsi; Zonca, Martin; Rioux, John D.; Duerr, Richard H.; Silverberg, Mark S.; Cho, Judy H.; Hakonarson, Hakon; Zwick, Michael E.; McGovern, Dermot P.B.; Kugathasan, Subra

2016-01-01

Background & Aims The inflammatory bowel diseases (IBD) ulcerative colitis (UC) and Crohn’s disease (CD) cause significant morbidity and are increasing in prevalence among all populations, including African Americans. More than 200 susceptibility loci have been identified in populations of predominantly European ancestry, but few loci have been associated with IBD in other ethnicities. Methods We performed 2 high-density, genome-wide scans comprising 2345 cases of African Americans with IBD (1646 with CD, 583 with UC, and 116 inflammatory bowel disease unclassified [IBD-U]) and 5002 individuals without IBD (controls, identified from the Health Retirement Study and Kaiser Permanente database). Single-nucleotide polymorphisms (SNPs) associated at P<5.0×10−8 in meta-analysis with a nominal evidence (P<.05) in each scan were considered to have genome-wide significance. Results We detected SNPs at HLA-DRB1, and African-specific SNPs at ZNF649 and LSAMP, with associations of genome-wide significance for UC. We detected SNPs at USP25 with associations of genome-wide significance associations for IBD. No associations of genome-wide significance were detected for CD. In addition, 9 genes previously associated with IBD contained SNPs with significant evidence for replication (P<1.6×10−6): ADCY3, CXCR6, HLA-DRB1 to HLA-DQA1 (genome-wide significance on conditioning), IL12B, PTGER4, and TNC for IBD; IL23R, PTGER4, and SNX20 (in strong linkage disequilibrium with NOD2) for CD; and KCNQ2 (near TNFRSF6B) for UC. Several of these genes, such as TNC (near TNFSF15), CXCR6, and genes associated with IBD at the HLA locus, contained SNPs with unique association patterns with African-specific alleles. Conclusions We performed a genome-wide association study of African Americans with IBD and identified loci associated with CD and UC in only this population; we also replicated loci identified in European populations. The detection of variants associated with IBD risk in only

Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

PubMed

Brant, Steven R; Okou, David T; Simpson, Claire L; Cutler, David J; Haritunians, Talin; Bradfield, Jonathan P; Chopra, Pankaj; Prince, Jarod; Begum, Ferdouse; Kumar, Archana; Huang, Chengrui; Venkateswaran, Suresh; Datta, Lisa W; Wei, Zhi; Thomas, Kelly; Herrinton, Lisa J; Klapproth, Jan-Micheal A; Quiros, Antonio J; Seminerio, Jenifer; Liu, Zhenqiu; Alexander, Jonathan S; Baldassano, Robert N; Dudley-Brown, Sharon; Cross, Raymond K; Dassopoulos, Themistocles; Denson, Lee A; Dhere, Tanvi A; Dryden, Gerald W; Hanson, John S; Hou, Jason K; Hussain, Sunny Z; Hyams, Jeffrey S; Isaacs, Kim L; Kader, Howard; Kappelman, Michael D; Katz, Jeffry; Kellermayer, Richard; Kirschner, Barbara S; Kuemmerle, John F; Kwon, John H; Lazarev, Mark; Li, Ellen; Mack, David; Mannon, Peter; Moulton, Dedrick E; Newberry, Rodney D; Osuntokun, Bankole O; Patel, Ashish S; Saeed, Shehzad A; Targan, Stephan R; Valentine, John F; Wang, Ming-Hsi; Zonca, Martin; Rioux, John D; Duerr, Richard H; Silverberg, Mark S; Cho, Judy H; Hakonarson, Hakon; Zwick, Michael E; McGovern, Dermot P B; Kugathasan, Subra

2017-01-01

The inflammatory bowel diseases (IBD) ulcerative colitis (UC) and Crohn's disease (CD) cause significant morbidity and are increasing in prevalence among all populations, including African Americans. More than 200 susceptibility loci have been identified in populations of predominantly European ancestry, but few loci have been associated with IBD in other ethnicities. We performed 2 high-density, genome-wide scans comprising 2345 cases of African Americans with IBD (1646 with CD, 583 with UC, and 116 inflammatory bowel disease unclassified) and 5002 individuals without IBD (controls, identified from the Health Retirement Study and Kaiser Permanente database). Single-nucleotide polymorphisms (SNPs) associated at P < 5.0 × 10 -8 in meta-analysis with a nominal evidence (P < .05) in each scan were considered to have genome-wide significance. We detected SNPs at HLA-DRB1, and African-specific SNPs at ZNF649 and LSAMP, with associations of genome-wide significance for UC. We detected SNPs at USP25 with associations of genome-wide significance for IBD. No associations of genome-wide significance were detected for CD. In addition, 9 genes previously associated with IBD contained SNPs with significant evidence for replication (P < 1.6 × 10 -6 ): ADCY3, CXCR6, HLA-DRB1 to HLA-DQA1 (genome-wide significance on conditioning), IL12B,PTGER4, and TNC for IBD; IL23R, PTGER4, and SNX20 (in strong linkage disequilibrium with NOD2) for CD; and KCNQ2 (near TNFRSF6B) for UC. Several of these genes, such as TNC (near TNFSF15), CXCR6, and genes associated with IBD at the HLA locus, contained SNPs with unique association patterns with African-specific alleles. We performed a genome-wide association study of African Americans with IBD and identified loci associated with UC in only this population; we also replicated IBD, CD, and UC loci identified in European populations. The detection of variants associated with IBD risk in only people of African descent demonstrates the

Next-generation DNA sequencing identifies novel gene variants and pathways involved in specific language impairment.

PubMed

Chen, Xiaowei Sylvia; Reader, Rose H; Hoischen, Alexander; Veltman, Joris A; Simpson, Nuala H; Francks, Clyde; Newbury, Dianne F; Fisher, Simon E

2017-04-25

A significant proportion of children have unexplained problems acquiring proficient linguistic skills despite adequate intelligence and opportunity. Developmental language disorders are highly heritable with substantial societal impact. Molecular studies have begun to identify candidate loci, but much of the underlying genetic architecture remains undetermined. We performed whole-exome sequencing of 43 unrelated probands affected by severe specific language impairment, followed by independent validations with Sanger sequencing, and analyses of segregation patterns in parents and siblings, to shed new light on aetiology. By first focusing on a pre-defined set of known candidates from the literature, we identified potentially pathogenic variants in genes already implicated in diverse language-related syndromes, including ERC1, GRIN2A, and SRPX2. Complementary analyses suggested novel putative candidates carrying validated variants which were predicted to have functional effects, such as OXR1, SCN9A and KMT2D. We also searched for potential "multiple-hit" cases; one proband carried a rare AUTS2 variant in combination with a rare inherited haplotype affecting STARD9, while another carried a novel nonsynonymous variant in SEMA6D together with a rare stop-gain in SYNPR. On broadening scope to all rare and novel variants throughout the exomes, we identified biological themes that were enriched for such variants, including microtubule transport and cytoskeletal regulation.

Next-generation DNA sequencing identifies novel gene variants and pathways involved in specific language impairment

PubMed Central

Chen, Xiaowei Sylvia; Reader, Rose H.; Hoischen, Alexander; Veltman, Joris A.; Simpson, Nuala H.; Francks, Clyde; Newbury, Dianne F.; Fisher, Simon E.

2017-01-01

A significant proportion of children have unexplained problems acquiring proficient linguistic skills despite adequate intelligence and opportunity. Developmental language disorders are highly heritable with substantial societal impact. Molecular studies have begun to identify candidate loci, but much of the underlying genetic architecture remains undetermined. We performed whole-exome sequencing of 43 unrelated probands affected by severe specific language impairment, followed by independent validations with Sanger sequencing, and analyses of segregation patterns in parents and siblings, to shed new light on aetiology. By first focusing on a pre-defined set of known candidates from the literature, we identified potentially pathogenic variants in genes already implicated in diverse language-related syndromes, including ERC1, GRIN2A, and SRPX2. Complementary analyses suggested novel putative candidates carrying validated variants which were predicted to have functional effects, such as OXR1, SCN9A and KMT2D. We also searched for potential “multiple-hit” cases; one proband carried a rare AUTS2 variant in combination with a rare inherited haplotype affecting STARD9, while another carried a novel nonsynonymous variant in SEMA6D together with a rare stop-gain in SYNPR. On broadening scope to all rare and novel variants throughout the exomes, we identified biological themes that were enriched for such variants, including microtubule transport and cytoskeletal regulation. PMID:28440294

A study of uranium favorability of Cenozoic sedimentary rocks, Basin and Range Province, Arizona: Part I, General geology and chronology of pre-late Miocene Cenozoic sedimentary rocks

USGS Publications Warehouse

Scarborough, Robert Bryan; Wilt, Jan Carol

1979-01-01

This study focuses attention on Cenozoic sedimentary rocks in the Basin and Range Province of Arizona. The known occurrences of uranium and anomalous radioactivity in these rocks are associated with sediments that accumulated in a low energy environment characterized by fine-grained clastics, including important tuffaceous materials, and carbonate rocks. Most uranium occurrences, in these rocks appear to be stratabound. Emphasis was placed on those sedimentary materials that pre-date the late Cenozoic Basin and Range disturbance. They are deformed and crop out on pedimented range blocks and along the province interface with the Transition Zone. Three tentative age groups are recognized: Group I - Oligocene, pre-22 m.y., Group II - early Miocene - 22 m.y. - 16 m.y., and Group III - middle Miocene - 16 m.y. to 13--10 m.y. Regionally, these three groups contain both coarse to fine-grained red clastics and low energy lighter colored 'lacustrine' phases. Each of the three groups has been the object of uranium exploration. Group II, the early Miocene strata, embraces the Anderson Mine - Artillery region host rocks and also the New River - Cave Creek early Miocene beds-along the boundary with the Transition Zone. These three groups of rocks have been tectonically deformed to the extent that original basins of deposition cannot yet be reconstructed. However, they were considerably more extensive in size than the late Cenozoic basins the origin of which deformed the former. Group II rocks are judged to be of prime interest because of: (1) the development and preservation of organic matter in varying lithologies, (2) apparent contemporaneity with silicic volcanic centers, (3) influence of Precambrian crystalline rocks, and (4) relative outcrop continuity near the stable Transition Zone. The Transition Zone, especially along its boundary with the Basin and Range Province, needs additional geologic investigation, especially as regards the depositional continuity of Group II

Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs

PubMed Central

Below, Jennifer E.; Parra, Esteban J.; Gamazon, Eric R.; Torres, Jason; Krithika, S.; Candille, Sophie; Lu, Yingchang; Manichakul, Ani; Peralta-Romero, Jesus; Duan, Qing; Li, Yun; Morris, Andrew P.; Gottesman, Omri; Bottinger, Erwin; Wang, Xin-Qun; Taylor, Kent D.; Ida Chen, Y.-D.; Rotter, Jerome I.; Rich, Stephen S.; Loos, Ruth J. F.; Tang, Hua; Cox, Nancy J.; Cruz, Miguel; Hanis, Craig L.; Valladares-Salgado, Adan

2016-01-01

We performed genome-wide meta-analysis of lipid traits on three samples of Mexican and Mexican American ancestry comprising 4,383 individuals, and followed up significant and highly suggestive associations in three additional Hispanic samples comprising 7,876 individuals. Genome-wide significant signals were observed in or near CELSR2, ZNF259/APOA5, KANK2/DOCK6 and NCAN/MAU2 for total cholesterol, LPL, ABCA1, ZNF259/APOA5, LIPC and CETP for HDL cholesterol, CELSR2, APOB and NCAN/MAU2 for LDL cholesterol, and GCKR, TRIB1, ZNF259/APOA5 and NCAN/MAU2 for triglycerides. Linkage disequilibrium and conditional analyses indicate that signals observed at ABCA1 and LIPC for HDL cholesterol and NCAN/MAU2 for triglycerides are independent of previously reported lead SNP associations. Analyses of lead SNPs from the European Global Lipids Genetics Consortium (GLGC) dataset in our Hispanic samples show remarkable concordance of direction of effects as well as strong correlation in effect sizes. A meta-analysis of the European GLGC and our Hispanic datasets identified five novel regions reaching genome-wide significance: two for total cholesterol (FN1 and SAMM50), two for HDL cholesterol (LOC100996634 and COPB1) and one for LDL cholesterol (LINC00324/CTC1/PFAS). The top meta-analysis signals were found to be enriched for SNPs associated with gene expression in a tissue-specific fashion, suggesting an enrichment of tissue-specific function in lipid-associated loci. PMID:26780889

Procedures for Identifying Rocks with Similar Features.

ERIC Educational Resources Information Center

Powell, William E.

1984-01-01

The purpose of this article is to provide college level physical geography and geology teachers with practical and simple techniques to help students classify and understand igneous, sedimentary, and metamorphic rocks. Essential equipment is also discussed, and recommended readings are listed. (RM)

[Identifying the specific causes of kidney allograft loss: A population-based study].

PubMed

Lohéac, Charlotte; Aubert, Olivier; Loupy, Alexandre; Legendre, Christophe

2018-04-01

Results of kidney transplantation have been improving but long-term allograft survival remains disappointing. The objective of the present study was to identify the specific causes of renal allograft loss, to assess their incidence and long-term outcomes. A total of 4783 patients from four French centres, transplanted between January 2004 and January 2014 were prospectively included. A total of 9959 kidney biopsies (protocol and for cause) performed between January 2004 and March 2015 were included. Donor and recipient clinical and biological parameters as well as anti-HLA antibody directed against the donor were included. The main outcome was the long-term kidney allograft survival, including the study of the associated causes of graft loss, the delay of graft loss according to their causes and the determinants of graft loss. There were 732 graft losses during the follow-up period (median time: 4.51 years) with an identified cause in 95.08 %. Kidney allograft survival at 9 years post-transplant was 78 %. The causes of allograft loss were: antibody-mediated rejection (31.69 %), thrombosis (25.55 %), medical intercurrent disease (14.62 %), recurrence of primary renal disease (7.1 %), BK- or CMV-associated nephropathy (n=35, 4.78 %), T cell-mediated rejection (4.78 %), urological disease (2.46 %) and calcineurin inhibitor nephrotoxicity (1.09 %). The main causes of allograft loss were antibody-mediated rejection and thrombosis. These results encourage efforts to prevent and detect these complications earlier in order to improve allograft survival. Copyright © 2018 Association Société de néphrologie. Published by Elsevier Masson SAS. All rights reserved.

Gastric Cancer-Specific Protein Profile Identified Using Endoscopic Biopsy Samples via MALDI Mass Spectrometry

PubMed Central

Kim, Hark Kyun; Reyzer, Michelle L.; Choi, Il Ju; Kim, Chan Gyoo; Kim, Hee Sung; Oshima, Akira; Chertov, Oleg; Colantonio, Simona; Fisher, Robert J.; Allen, Jamie L.; Caprioli, Richard M.; Green, Jeffrey E.

2012-01-01

To date, proteomic analyses on gastrointestinal cancer tissue samples have been performed using surgical specimens only, which are obtained after a diagnosis is made. To determine if a proteomic signature obtained from endoscopic biopsy samples could be found to assist with diagnosis, frozen endoscopic biopsy samples collected from 63 gastric cancer patients and 43 healthy volunteers were analyzed using matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. A statistical classification model was developed to distinguish tumor from normal tissues using half the samples and validated with the other half. A protein profile was discovered consisting of 73 signals that could classify 32 cancer and 22 normal samples in the validation set with high predictive values (positive and negative predictive values for cancer, 96.8% and 91.3%; sensitivity, 93.8%; specificity, 95.5%). Signals overexpressed in tumors were identified as α-defensin-1, α-defensin-2, calgranulin A, and calgranulin B. A protein profile was also found to distinguish pathologic stage Ia (pT1N0M0) samples (n = 10) from more advanced stage (Ib or higher) tumors (n = 48). Thus, protein profiles obtained from endoscopic biopsy samples may be useful in assisting with the diagnosis of gastric cancer and, possibly, in identifying early stage disease. PMID:20557134

Sedimentary and tectonic evolution of Plio Pleistocene alluvial and lacustrine deposits of Fucino Basin (central Italy)

NASA Astrophysics Data System (ADS)

Cavinato, Gian Paolo; Carusi, Claudio; Dall'Asta, Massimo; Miccadei, Enrico; Piacentini, Tommaso

2002-04-01

The Fucino Basin was the greatest lake of the central Italy, which was completely drained at the end of 19th century. The basin is an intramontane half-graben filled by Plio-Quaternary alluvial and lacustrine deposits located in the central part of the Apennines chain, which was formed in Upper Pliocene and in Quaternary time by the extensional tectonic activity. The analysis of the geological surface data allows the definition of several stratigraphic units grouped in Lower Units and Upper Units. The Lower Units (Upper Pliocene) are exposed along the northern and north-eastern basin margins. They consist of open to marginal lacustrine deposits, breccia deposits and fluvial deposits. The Upper Units (Lower Pliocene-Holocene) consist of interbedded marginal lacustrine deposits and fluvial deposits; thick coarse-grained fan-delta deposits are interfingered at the foot of the main relief with fluvial-lacustrine deposits. Most of the thickness of the lacustrine sequences (more than 1000-m thick) is buried below the central part of the Fucino Plain. The basin is bounded by E-W, WSW-ENE and NW-SE fault systems: Velino-Magnola Fault (E-W) and Tremonti-Celano-Aielli Fault (WSW-ENE) and S. Potito-Celano Fault (NW-SE) in the north; the Trasacco Fault, the Pescina-Celano Fault and the Serrone Fault (NW-SE) in the south-east. The geometry and kinematic indicators of these faults indicate normal or oblique movements. The study of industrial seismic profiles across the Fucino Basin gives a clear picture of the subsurface basin geometry; the basin shows triangular-shaped basin-fill geometry, with the maximum deposits thickness toward the main east boundary fault zones that dip south-westward (Serrone Fault, Trasacco Fault, Pescina-Celano Fault). On the basis of geological surface data, borehole stratigraphy and seismic data analysis, it is possible to recognize and to correlate sedimentary and seismic facies. The bottom of the basin is well recognized in the seismic lines

A spectroscopic method for identifying terrestrial biocarbonates and application to Mars

NASA Astrophysics Data System (ADS)

Blanco, A.; Orofino, V.; D'Elia, M.; Fonti, S.; Mastandrea, A.; Guido, A.; Russo, F.

2011-06-01

Searching for traces of extinct and/or extant life on Mars is one of the major objectives for remote-sensing and in situ exploration of the planet. In previous laboratory works we have investigated the infrared spectral modifications induced by thermal processing on different carbonate samples, in the form of fresh shells and fossils of different ages, whose biotic origin is easily recognizable. The goal was to discriminate them from their abiotic counterparts. In general, it is difficult to identify biotic signatures, especially when the organisms inducing the carbonate precipitation have low fossilization potential (i.e. microbes, bacteria, archaea). A wide variety of microorganisms are implicated in carbonate genesis, and their direct characterization is very difficult to evaluate by traditional methods, both in ancient sedimentary systems and even in recent environments. In the present work we apply our analysis to problematic carbonate samples, in which there is no clear evidence of controlled or induced biomineralization. This analysis indicates a very likely biotic origin of the aragonite samples under study, in agreement with the conclusion previously reported by Guido et al. (2007) who followed a completely different approach based on a complex set of sedimentary, petrographic, geochemical and biochemical analyses. We show that our method is reliable for discriminating between biotic and abiotic carbonates, and therefore it is a powerful tool in the search for life on Mars in the next generation of space missions to the planet.

Sedimentary processes on the Storfjorden trough-mouth fan during last deglaciation phase: the role of subglacial meltwater plumes on continental margin sedimentation

NASA Astrophysics Data System (ADS)

Lucchi, Renata G.; Camerlenghi, Angelo; Colmenero-Hidalgo, Elena; Sierro, Francisco J.; Bárcena, Maria Angeles; Flores, José-Abel; Urgeles, Roger; Macrı, Patrizia; Sagnotti, Leonardo; Caburlotto, Andrea

2010-05-01

The continental margin of the Southern Storfjorden trough-mouth fan was investigated within the SVAIS project (BIO Hesperides cruise, August 2007) as a Spanish contribution to IPY Activity N. 367 (Neogene ice streams and sedimentary processes on high- latitude continental margins - NICE STREAMS). The objectives were to investigate the glacially-dominated late-Neogene-Quaternary sedimentary architecture of the NW Barents Sea continental margin and reconstruct its sedimentary system in response to natural climate change. The paleo-ice streams in Storfjorden had a small catchment area draining ice from the southern Spitsbergen and Bear Island. The short distance from the ice source to the calving front produced a short residence time of ice, and therefore a rapid response to climatic changes. Here ground truthing recovered the last few thousands years sedimentary sequence thought to represent last deglaciation phase. Detailed palaeostratigraphic investigations together with paleomagnetic and rock magnetic analyses and AMS dating define the constraints for high-resolution inter-core correlation and dating. Most of the cores contain at the base gravity-mass deposits including debris flows and over-consolidated glacigenic diamicton. Mass deposits are overlain by an oxidized interval originated at the release and sink of fresh, cold and oxygenated melt-waters at the inception of the deglaciation phase. On the upper slope the oxidized interval is overlain by several meters of finely-stratified sediments composed of sandy-silt layers cyclically recurring within finer-grained laminated silty-clay sediments. Textural and compositional analyses suggest preferential deposition by settling from meltwater sediment-laden plumes (plumites) occurred during deglaciation with coarser layers representing episodes of subglacial meltwater discharge (glacial hyperpycnal flows) accompanying the ice streams retreat. The laminated sequence is truncated at uppermost part by a more recent

Sedimentary record of sub-glacial outburst floods at Laurentian Fan

NASA Astrophysics Data System (ADS)

Leng, Wei; von Dobeneck, Tilo

2016-04-01

Large-scale glacial meltwater discharge could be widely recognized off the eastern Canadian continental margin. At Laurentian Fan, sub-glacial outburst floods eroded Permian-Carboniferous redbeds at Gulf of St. Lawrence and then delivered the reddish sediments by Laurentian Channel. Sedimentary record from four gravity cores (GeoB18514-2, 18515-1, 18516-2 and 18517-1) at the SW slope of the Grand Banks of Newfoundland revealed the major depositional processes since Heinrich event 2 (ca. 22 ka). In the cores, the upper thick Holocene olive-grey silty mud units overly IRD-rich Heinrich 1 layer, five reddish units are distinguished in the lower part. Reddish units get proportionally thinner along the SW slope at higher and more distal positions; instead, separating olive-grey layers get thicker with height and distance. Reddish and olive grey units have sharp boundaries and no signs of erosion. Mean grain size changes abruptly from coarse in grey layers to fine in reddish layers, terrigenous elements (as Al, K, Ti, Fe) and clays (Al/Si) are highly elevated in reddish layers and low in Heinrich layers, which are instead enriched in detrital continental carbonates. Both Heinrich layers and reddish layers have enhanced magnetic susceptibility, but Heinrich layer have higher ferromagnetic (SIRM) content (mafic rocks), while reddish layers have more hematite (HIRM). These five reddish layers differ from event to event, which seems to reflect different mixing ratios of event-related and background sedimentation. This mixing will allow estimating event-specific sedimentation rates. Using mixing ratio combined with 14C dating data could contribute to estimate the sedimentation rate and duration of outburst floods, which could help to build ice sheet retreat history and find the connection with paleoclimate changes.

Sensitivity and specificity of the Chinese version of the Schizotypal Personality Questionnaire-Brief for identifying undergraduate students susceptible to psychosis.

PubMed

Ma, Wei-Fen; Wu, Po-Lun; Yang, Shu-Ju; Cheng, Kuang-Fu; Chiu, Hsien-Tsai; Lane, Hsien-Yuan

2010-12-01

Early interventions can improve treatment outcomes for individuals with major psychiatric disorders and with nonspecific symptoms but increasingly impaired cognitive perception, emotions, and behaviour. One way used to identify people susceptible to psychosis is through the schizotypal personality trait. Persons with schizotypal characteristics have been identified with the widely used Schizotypal Personality Questionnaire-Brief. However, no suitable instruments are available to screen individuals in the Taiwanese population for evidence of early psychotic symptoms. The purpose of this study was to test the sensitivity and specificity of the Chinese version of the Schizotypal Personality Questionnaire-Brief for identifying undergraduate students' susceptibility to psychosis. Two-stage, cross-sectional survey design. The self-administered scale was tested in a convenience sample of 618 undergraduate students at a medical university in Taiwan. Among these students, 54 completed the scale 2 weeks apart for test-retest reliability, and 80 were tested to identify their susceptibility to psychosis. In Stage I, participants with scores in the top 6.5% were classified as the high-score group (n=40). The control group (n=40) was randomly selected from the remaining participants with scores <15 and matched by gender. These 80 students were asked to participate in psychiatric interviews in Stage II. The instrument was tested for reliability using intraclass correlation coefficients and the Kuder-Richardson formula 20. The instrument was analysed for optimal sensitivity and specificity using odds-ratio analysis and receiver operating characteristic curves. The 22-item Chinese version of the Schizotypal Personality Questionnaire-Brief had a 2-week test-retest reliability of 0.82 and internal consistency of 0.76. The optimal cut-off score was 17, with odds ratios of 24.4 and an area under the receiver operating characteristic curves of 0.83. The instrument had a sensitivity of

A priming effect of benthic gastropod mucus on sedimentary organic matter remineralization

NASA Astrophysics Data System (ADS)

Hannides, A. K.; Aller, R. C.

2016-02-01

Mucous gels are produced by benthic animals rapidly and in copious amounts, and have previously been shown to significantly affect diffusion rates of redox-sensitive ions and organic compounds in sediment pore waters. They are also a highly likely priming substrate whose addition in modest amounts affects sedimentary organic matter remineralization. We tested the priming effect of benthic infaunal mucus using secretions of the common gastropod Neverita duplicata as model substrate. Their composition is typical of marine molluscan mucus, consisting primarily of water (>96% by weight), which is in relative equilibrium with seawater. Salt-free dry weight constitutes 0.7% and 0.6% of total pedal and hypobranchial mucus, respectively. The C:N ratios of pedal and hypobranchial mucus indicate that the organic component consists of a mucopolysaccharide-glycoprotein complex that varies depending on its function, while low C:S ratios of the insoluble component and positive staining with Alcian Blue dye are indicative of S-ester and alkyl-SO42- groups bridging mucopolysaccharide and glycoprotein components. Anoxic incubations of pedal mucus of N. duplicata, sediment, and mucus-sediment mixture, resulted in the anaerobic generation of ΣCO2 and NH4+ at ratios lower than initial C:N ratios, indicating the preferential decomposition of N-rich moieties. Production rates of SCO2 and NH4+ in mucus-sediment incubations are higher, by 9±16% and 29±11%, respectively, than those predicted from linear addition of mucus-only and sediment-only rates. The statistically significant accelerated remineralization rate of N in the presence of modest mucus contribution (0.2% of total N), suggests that benthic mucus addition affects sedimentary organic matter remineralization processes through a "priming" effect.

Aquatic environmental changes and anthropogenic activities reflected by the sedimentary records of the Shima River, Southern China.

PubMed

Gao, Lei; Wang, Zhuowei; Shan, Jiju; Chen, Jianyao; Tang, Changyuan; Yi, Ming

2017-05-01

Reconstructing historical sedimentary records is essential for better understanding the effects of anthropogenic activities on river environments. We used lead-210 to date riverine sediment core from the Shima River in China. We obtained a sedimentary history of 34 years (1982-2015) for core S2, which had a length of 34 cm. The sedimentation rate of 0.304-2.04 cm y -1 was controlled by both flood events and anthropogenic activities. The conservative element content depth profiles remained relatively constant, suggestive of a relatively stable sediment provenance; therefore, the increase in the sedimentation rate over time was mainly the result of domestic and industrial wastewater effluent and the construction of a rubber dam at the middle and lower reach of the Shima River. From 1982 to 2015, the nutrient and trace metal depth profiles could be divided in three periods based on their trends. From 1982 to 1993, the vertical profiles of nutrients (organic carbon, total phosphorus, and total nitrogen) and three trace metals (nickel, zinc, and manganese) were relatively stable; however, the gradual decrease in copper and cadmium was likely associated with a reduction in agricultural chemical application. From 1993 to 2003, a population explosion and rapid industrialization were responsible for an increase in the input of pollutants into the Shima River, which was partly attenuated by water from the Dong River, leading to a gradual increase in nutrient and trace metal contents. Finally, from 2003 to 2015, the Shima River stopped being used as a source of water due to its deteriorating water quality. The relatively lower velocity of the water flow after the recovery of its flow direction and the reconstruction of the rubber dam in 2009 provided advantageous sedimentary conditions, promoting nutrient accumulation and significant trace metal enrichment. Copyright © 2017 Elsevier Ltd. All rights reserved.