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Sample records for imaging probe geometric

  1. Image coding with geometric wavelets.

    PubMed

    Alani, Dror; Averbuch, Amir; Dekel, Shai

    2007-01-01

    This paper describes a new and efficient method for low bit-rate image coding which is based on recent development in the theory of multivariate nonlinear piecewise polynomial approximation. It combines a binary space partition scheme with geometric wavelet (GW) tree approximation so as to efficiently capture curve singularities and provide a sparse representation of the image. The GW method successfully competes with state-of-the-art wavelet methods such as the EZW, SPIHT, and EBCOT algorithms. We report a gain of about 0.4 dB over the SPIHT and EBCOT algorithms at the bit-rate 0.0625 bits-per-pixels (bpp). It also outperforms other recent methods that are based on "sparse geometric representation." For example, we report a gain of 0.27 dB over the Bandelets algorithm at 0.1 bpp. Although the algorithm is computationally intensive, its time complexity can be significantely reduced by collecting a "global" GW n-term approximation to the image from a collection of GW trees, each constructed separately over tiles of the image.

  2. Multispectral imaging probe

    SciTech Connect

    Sandison, David R.; Platzbecker, Mark R.; Descour, Michael R.; Armour, David L.; Craig, Marcus J.; Richards-Kortum, Rebecca

    1999-01-01

    A multispectral imaging probe delivers a range of wavelengths of excitation light to a target and collects a range of expressed light wavelengths. The multispectral imaging probe is adapted for mobile use and use in confined spaces, and is sealed against the effects of hostile environments. The multispectral imaging probe comprises a housing that defines a sealed volume that is substantially sealed from the surrounding environment. A beam splitting device mounts within the sealed volume. Excitation light is directed to the beam splitting device, which directs the excitation light to a target. Expressed light from the target reaches the beam splitting device along a path coaxial with the path traveled by the excitation light from the beam splitting device to the target. The beam splitting device directs expressed light to a collection subsystem for delivery to a detector.

  3. Multispectral imaging probe

    DOEpatents

    Sandison, D.R.; Platzbecker, M.R.; Descour, M.R.; Armour, D.L.; Craig, M.J.; Richards-Kortum, R.

    1999-07-27

    A multispectral imaging probe delivers a range of wavelengths of excitation light to a target and collects a range of expressed light wavelengths. The multispectral imaging probe is adapted for mobile use and use in confined spaces, and is sealed against the effects of hostile environments. The multispectral imaging probe comprises a housing that defines a sealed volume that is substantially sealed from the surrounding environment. A beam splitting device mounts within the sealed volume. Excitation light is directed to the beam splitting device, which directs the excitation light to a target. Expressed light from the target reaches the beam splitting device along a path coaxial with the path traveled by the excitation light from the beam splitting device to the target. The beam splitting device directs expressed light to a collection subsystem for delivery to a detector. 8 figs.

  4. Geometric Effects When Measuring Small Holes With Micro Contact Probes

    PubMed Central

    Stone, Jack; Muralikrishnan, Bala; Sahay, Chittaranjan

    2011-01-01

    A coordinate measuring machine with a suitably small probe can be used to measure micro-features such as the diameter and form of small holes (often about 100 μm in diameter). When measuring small holes, the clearance between the probe tip and the part is sometimes nearly as small as other characteristic lengths (such as probe deflection or form errors) associated with the measurement. Under these circumstances, the basic geometry of the measurement is much different than it is for the measurement of a macroscopic object. Various geometric errors are greatly magnified, and consequently sources of error that are totally irrelevant when measuring macroscopic artifacts can become important. In this article we discuss errors associated with misalignment or non-orthogonality of the probe axes, probe-tip radius compensation, and mechanical filtering. PMID:26989585

  5. Overview on METEOSAT geometrical image data processing

    NASA Technical Reports Server (NTRS)

    Diekmann, Frank J.

    1994-01-01

    Digital Images acquired from the geostationary METEOSAT satellites are processed and disseminated at ESA's European Space Operations Centre in Darmstadt, Germany. Their scientific value is mainly dependent on their radiometric quality and geometric stability. This paper will give an overview on the image processing activities performed at ESOC, concentrating on the geometrical restoration and quality evaluation. The performance of the rectification process for the various satellites over the past years will be presented and the impacts of external events as for instance the Pinatubo eruption in 1991 will be explained. Special developments both in hard and software, necessary to cope with demanding tasks as new image resampling or to correct for spacecraft anomalies, are presented as well. The rotating lens of MET-5 causing severe geometrical image distortions is an example for the latter.

  6. Geometric Computation of Human Gyrification Indexes from Magnetic Resonance Images

    DTIC Science & Technology

    2009-04-01

    GEOMETRIC COMPUTATION OF HUMAN GYRIFICATION INDEXES FROM MAGNETIC RESONANCE IMAGES By Shu Su Tonya White Marcus Schmidt Chiu-Yen Kao and Guillermo...00-2009 to 00-00-2009 4. TITLE AND SUBTITLE Geometric Computation of Human Gyrification Indexes from Magnetic Resonance Images 5a. CONTRACT NUMBER... Geometric Computation of Gyrification Indexes Chiu-Yen Kao 1 Geometric Computation of Human Gyrification

  7. Geometric and Radiometric Evaluation of Rasat Images

    NASA Astrophysics Data System (ADS)

    Cam, Ali; Topan, Hüseyin; Oruç, Murat; Özendi, Mustafa; Bayık, Çağlar

    2016-06-01

    RASAT, the second remote sensing satellite of Turkey, was designed and assembled, and also is being operated by TÜBİTAK Uzay (Space) Technologies Research Institute (Ankara). RASAT images in various levels are available free-of-charge via Gezgin portal for Turkish citizens. In this paper, the images in panchromatic (7.5 m GSD) and RGB (15 m GSD) bands in various levels were investigated with respect to its geometric and radiometric characteristics. The first geometric analysis is the estimation of the effective GSD as less than 1 pixel for radiometrically processed level (L1R) of both panchromatic and RGB images. Secondly, 2D georeferencing accuracy is estimated by various non-physical transformation models (similarity, 2D affine, polynomial, affine projection, projective, DLT and GCP based RFM) reaching sub-pixel accuracy using minimum 39 and maximum 52 GCPs. The radiometric characteristics are also investigated for 8 bits, estimating SNR between 21.8-42.2, and noise 0.0-3.5 for panchromatic and MS images for L1R when the sea is masked to obtain the results for land areas. The analysis show that RASAT images satisfies requirements for various applications. The research is carried out in Zonguldak test site which is mountainous and partly covered by dense forest and urban areas.

  8. Optical imaging probes in oncology

    PubMed Central

    Martelli, Cristina; Dico, Alessia Lo; Diceglie, Cecilia; Lucignani, Giovanni; Ottobrini, Luisa

    2016-01-01

    Cancer is a complex disease, characterized by alteration of different physiological molecular processes and cellular features. Keeping this in mind, the possibility of early identification and detection of specific tumor biomarkers by non-invasive approaches could improve early diagnosis and patient management. Different molecular imaging procedures provide powerful tools for detection and non-invasive characterization of oncological lesions. Clinical studies are mainly based on the use of computed tomography, nuclear-based imaging techniques and magnetic resonance imaging. Preclinical imaging in small animal models entails the use of dedicated instruments, and beyond the already cited imaging techniques, it includes also optical imaging studies. Optical imaging strategies are based on the use of luminescent or fluorescent reporter genes or injectable fluorescent or luminescent probes that provide the possibility to study tumor features even by means of fluorescence and luminescence imaging. Currently, most of these probes are used only in animal models, but the possibility of applying some of them also in the clinics is under evaluation. The importance of tumor imaging, the ease of use of optical imaging instruments, the commercial availability of a wide range of probes as well as the continuous description of newly developed probes, demonstrate the significance of these applications. The aim of this review is providing a complete description of the possible optical imaging procedures available for the non-invasive assessment of tumor features in oncological murine models. In particular, the characteristics of both commercially available and newly developed probes will be outlined and discussed. PMID:27145373

  9. Optical imaging probes in oncology.

    PubMed

    Martelli, Cristina; Lo Dico, Alessia; Diceglie, Cecilia; Lucignani, Giovanni; Ottobrini, Luisa

    2016-07-26

    Cancer is a complex disease, characterized by alteration of different physiological molecular processes and cellular features. Keeping this in mind, the possibility of early identification and detection of specific tumor biomarkers by non-invasive approaches could improve early diagnosis and patient management.Different molecular imaging procedures provide powerful tools for detection and non-invasive characterization of oncological lesions. Clinical studies are mainly based on the use of computed tomography, nuclear-based imaging techniques and magnetic resonance imaging. Preclinical imaging in small animal models entails the use of dedicated instruments, and beyond the already cited imaging techniques, it includes also optical imaging studies. Optical imaging strategies are based on the use of luminescent or fluorescent reporter genes or injectable fluorescent or luminescent probes that provide the possibility to study tumor features even by means of fluorescence and luminescence imaging. Currently, most of these probes are used only in animal models, but the possibility of applying some of them also in the clinics is under evaluation.The importance of tumor imaging, the ease of use of optical imaging instruments, the commercial availability of a wide range of probes as well as the continuous description of newly developed probes, demonstrate the significance of these applications. The aim of this review is providing a complete description of the possible optical imaging procedures available for the non-invasive assessment of tumor features in oncological murine models. In particular, the characteristics of both commercially available and newly developed probes will be outlined and discussed.

  10. Samara Probe For Remote Imaging

    NASA Technical Reports Server (NTRS)

    Burke, James D.

    1989-01-01

    Imaging probe descends through atmosphere of planet, obtaining images of ground surface as it travels. Released from aircraft over Earth or from spacecraft over another planet. Body and single wing shaped like samara - winged seed like those of maple trees. Rotates as descends, providing panoramic view of terrain below. Radio image obtained by video camera to aircraft or spacecraft overhead.

  11. Geometric assessment of image quality using digital image registration techniques

    NASA Technical Reports Server (NTRS)

    Tisdale, G. E.

    1976-01-01

    Image registration techniques were developed to perform a geometric quality assessment of multispectral and multitemporal image pairs. Based upon LANDSAT tapes, accuracies to a small fraction of a pixel were demonstrated. Because it is insensitive to the choice of registration areas, the technique is well suited to performance in an automatic system. It may be implemented at megapixel-per-second rates using a commercial minicomputer in combination with a special purpose digital preprocessor.

  12. Gamma-Ray Imaging Probes.

    NASA Astrophysics Data System (ADS)

    Wild, Walter James

    1988-12-01

    External nuclear medicine diagnostic imaging of early primary and metastatic lung cancer tumors is difficult due to the poor sensitivity and resolution of existing gamma cameras. Nonimaging counting detectors used for internal tumor detection give ambiguous results because distant background variations are difficult to discriminate from neighboring tumor sites. This suggests that an internal imaging nuclear medicine probe, particularly an esophageal probe, may be advantageously used to detect small tumors because of the ability to discriminate against background variations and the capability to get close to sites neighboring the esophagus. The design, theory of operation, preliminary bench tests, characterization of noise behavior and optimization of such an imaging probe is the central theme of this work. The central concept lies in the representation of the aperture shell by a sequence of binary digits. This, coupled with the mode of operation which is data encoding within an axial slice of space, leads to the fundamental imaging equation in which the coding operation is conveniently described by a circulant matrix operator. The coding/decoding process is a classic coded-aperture problem, and various estimators to achieve decoding are discussed. Some estimators require a priori information about the object (or object class) being imaged; the only unbiased estimator that does not impose this requirement is the simple inverse-matrix operator. The effects of noise on the estimate (or reconstruction) is discussed for general noise models and various codes/decoding operators. The choice of an optimal aperture for detector count times of clinical relevance is examined using a statistical class-separability formalism.

  13. Discrete Bimodal Probes for Thrombus Imaging

    PubMed Central

    Uppal, Ritika; Ciesienski, Kate L.; Chonde, Daniel B.; Loving, Galen S.; Caravan, Peter

    2012-01-01

    Here we report a generalizable solid/solution phase strategy for the synthesis of discrete bimodal fibrin-targeted imaging probes. A fibrin-specific peptide was conjugated with two distinct imaging reporters at the C- and N-terminus. In vitro studies demonstrated retention of fibrin affinity and specificity. Imaging studies showed that these probes could detect fibrin over a wide range of probe concentrations by optical, magnetic resonance, and positron emission tomography imaging. PMID:22698259

  14. Detection and description of geometrically transformed digital images

    NASA Astrophysics Data System (ADS)

    Mahdian, Babak; Saic, Stanislav

    2009-02-01

    Geometric transformations such as scaling or rotation are common tools employed by forgery creators. These procedures are typically based on a resampling and interpolation step. The interpolation process brings specific periodic properties into the image. In this paper, we show how to detect these properties. Our aim is to detect all possible geometric transformations in the image being investigated. Furthermore, as the proposed method, as well as other existing detectors, is sensitive to noise, we also briefly show a simple method capable of detecting image noise inconsistencies. Noise is a common tool used to conceal the traces of tampering.

  15. Imaging probe for tumor malignancy

    NASA Astrophysics Data System (ADS)

    Tanaka, Shotaro; Kizaka-Kondoh, Shinae; Hiraoka, Hasahiro

    2009-02-01

    Solid tumors possess unique microenvironments that are exposed to chronic hypoxic conditions ("tumor hypoxia"). Although more than half a century has passed since it was suggested that tumor hypoxia correlated with poor treatment outcomes and contributed to cancer recurrence, a fundamental solution to this problem has yet to be found. Hypoxia-inducible factor (HIF-1) is the main transcription factor that regulates the cellular response to hypoxia. It induces various genes whose functions are strongly associated with malignant alteration of the entire tumor. The cellular changes induced by HIF-1 are extremely important targets of cancer therapy, particularly in therapy against refractory cancers. Imaging of the HIF-1-active microenvironment is therefore important for cancer therapy. To image HIF-1activity in vivo, we developed a PTD-ODD fusion protein, POHA, which was uniquely labeled with near-infrared fluorescent dye at the C-terminal. POHA has two functional domains: protein transduction domain (PTD) and VHL-mediated protein destruction motif in oxygen-dependent degradation (ODD) domain of the alpha subunit of HIF-1 (HIF-1α). It can therefore be delivered to the entire body and remain stabilized in the HIF-1-active cells. When it was intravenously injected into tumor-bearing mice, a tumor-specific fluorescence signal was detected in the tumor 6 h after the injection. These results suggest that POHA can be used an imaging probe for tumor malignancy.

  16. On digital image processing technology and application in geometric measure

    NASA Astrophysics Data System (ADS)

    Yuan, Jiugen; Xing, Ruonan; Liao, Na

    2014-04-01

    Digital image processing technique is an emerging science that emerging with the development of semiconductor integrated circuit technology and computer science technology since the 1960s.The article introduces the digital image processing technique and principle during measuring compared with the traditional optical measurement method. It takes geometric measure as an example and introduced the development tendency of digital image processing technology from the perspective of technology application.

  17. A geometric deformable model for echocardiographic image segmentation

    NASA Technical Reports Server (NTRS)

    Hang, X.; Greenberg, N. L.; Thomas, J. D.

    2002-01-01

    Gradient vector flow (GVF), an elegant external force for parametric deformable models, can capture object boundaries from both sides. A new geometric deformable model is proposed that combines GVF and the geodesic active contour model. The level set method is used as the numerical method of this model. The model is applied for echocardiographic image segmentation.

  18. Techniques for Molecular Imaging Probe Design

    PubMed Central

    Reynolds, Fred; Kelly, Kimberly A.

    2011-01-01

    Molecular imaging allows clinicians to visualize disease specific molecules, thereby providing relevant information in the diagnosis and treatment of patients. With advances in genomics and proteomics and underlying mechanisms of disease pathology, the number of targets identified has significantly outpaced the number of developed molecular imaging probes. There has been a concerted effort to bridge this gap with multidisciplinary efforts in chemistry, proteomics, physics, material science, and biology; all essential to progress in molecular imaging probe development. In this review, we will discuss target selection, screening techniques and probe optimization with the aim of developing clinically relevant molecularly targeted imaging agents. PMID:22201532

  19. Techniques for molecular imaging probe design.

    PubMed

    Reynolds, Fred; Kelly, Kimberly A

    2011-12-01

    Molecular imaging allows clinicians to visualize disease-specific molecules, thereby providing relevant information in the diagnosis and treatment of patients. With advances in genomics and proteomics and underlying mechanisms of disease pathology, the number of targets identified has significantly outpaced the number of developed molecular imaging probes. There has been a concerted effort to bridge this gap with multidisciplinary efforts in chemistry, proteomics, physics, material science, and biology--all essential to progress in molecular imaging probe development. In this review, we discuss target selection, screening techniques, and probe optimization with the aim of developing clinically relevant molecularly targeted imaging agents.

  20. Molecular Imaging Probe Development using Microfluidics

    PubMed Central

    Liu, Kan; Wang, Ming-Wei; Lin, Wei-Yu; Phung, Duy Linh; Girgis, Mark D.; Wu, Anna M.; Tomlinson, James S.; Shen, Clifton K.-F.

    2012-01-01

    In this manuscript, we review the latest advancement of microfluidics in molecular imaging probe development. Due to increasing needs for medical imaging, high demand for many types of molecular imaging probes will have to be met by exploiting novel chemistry/radiochemistry and engineering technologies to improve the production and development of suitable probes. The microfluidic-based probe synthesis is currently attracting a great deal of interest because of their potential to deliver many advantages over conventional systems. Numerous chemical reactions have been successfully performed in micro-reactors and the results convincingly demonstrate with great benefits to aid synthetic procedures, such as purer products, higher yields, shorter reaction times compared to the corresponding batch/macroscale reactions, and more benign reaction conditions. Several ‘proof-of-principle’ examples of molecular imaging probe syntheses using microfluidics, along with basics of device architecture and operation, and their potential limitations are discussed here. PMID:22977436

  1. Quantum image encryption based on restricted geometric and color transformations

    NASA Astrophysics Data System (ADS)

    Song, Xian-Hua; Wang, Shen; Abd El-Latif, Ahmed A.; Niu, Xia-Mu

    2014-08-01

    A novel encryption scheme for quantum images based on restricted geometric and color transformations is proposed. The new strategy comprises efficient permutation and diffusion properties for quantum image encryption. The core idea of the permutation stage is to scramble the codes of the pixel positions through restricted geometric transformations. Then, a new quantum diffusion operation is implemented on the permutated quantum image based on restricted color transformations. The encryption keys of the two stages are generated by two sensitive chaotic maps, which can ensure the security of the scheme. The final step, measurement, is built by the probabilistic model. Experiments conducted on statistical analysis demonstrate that significant improvements in the results are in favor of the proposed approach.

  2. Advanced ultrasound probes for medical imaging

    NASA Astrophysics Data System (ADS)

    Wildes, Douglas G.; Smith, L. Scott

    2012-05-01

    New medical ultrasound probe architectures and materials build upon established 1D phased array technology and provide improved imaging performance and clinical value. Technologies reviewed include 1.25D and 1.5D arrays for elevation slice thickness control; electro-mechanical and 2D array probes for real-time 3D imaging; catheter probes for imaging during minimally-invasive procedures; single-crystal piezoelectric materials for greater frequency bandwidth; and cMUT arrays using silicon MEMS in place of piezo materials.

  3. GEOMETRIC PROCESSING OF DIGITAL IMAGES OF THE PLANETS.

    USGS Publications Warehouse

    Edwards, Kathleen

    1987-01-01

    New procedures and software have been developed for geometric transformations of images to support digital cartography of the planets. The procedures involve the correction of spacecraft camera orientation of each image with the use of ground control and the transformation of each image to a Sinusoidal Equal-Area map projection with an algorithm which allows the number of transformation calculations to vary as the distortion varies within the image. When the distortion is low in an area of an image, few transformation computations are required, and most pixels can be interpolated. When distortion is extreme, the location of each pixel is computed. Mosaics are made of these images and stored as digital databases.

  4. Geometric, Kinematic and Radiometric Aspects of Image-Based Measurements

    NASA Technical Reports Server (NTRS)

    Liu, Tianshu

    2002-01-01

    This paper discusses theoretical foundations of quantitative image-based measurements for extracting and reconstructing geometric, kinematic and dynamic properties of observed objects. New results are obtained by using a combination of methods in perspective geometry, differential geometry. radiometry, kinematics and dynamics. Specific topics include perspective projection transformation. perspective developable conical surface, perspective projection under surface constraint, perspective invariants, the point correspondence problem. motion fields of curves and surfaces. and motion equations of image intensity. The methods given in this paper arc useful for determining morphology and motion fields of deformable bodies such as elastic bodies. viscoelastic mediums and fluids.

  5. Biomedical image segmentation using geometric deformable models and metaheuristics.

    PubMed

    Mesejo, Pablo; Valsecchi, Andrea; Marrakchi-Kacem, Linda; Cagnoni, Stefano; Damas, Sergio

    2015-07-01

    This paper describes a hybrid level set approach for medical image segmentation. This new geometric deformable model combines region- and edge-based information with the prior shape knowledge introduced using deformable registration. Our proposal consists of two phases: training and test. The former implies the learning of the level set parameters by means of a Genetic Algorithm, while the latter is the proper segmentation, where another metaheuristic, in this case Scatter Search, derives the shape prior. In an experimental comparison, this approach has shown a better performance than a number of state-of-the-art methods when segmenting anatomical structures from different biomedical image modalities.

  6. Protein-based tumor molecular imaging probes

    PubMed Central

    Lin, Xin; Xie, Jin

    2013-01-01

    Molecular imaging is an emerging discipline which plays critical roles in diagnosis and therapeutics. It visualizes and quantifies markers that are aberrantly expressed during the disease origin and development. Protein molecules remain to be one major class of imaging probes, and the option has been widely diversified due to the recent advances in protein engineering techniques. Antibodies are part of the immunosystem which interact with target antigens with high specificity and affinity. They have long been investigated as imaging probes and were coupled with imaging motifs such as radioisotopes for that purpose. However, the relatively large size of antibodies leads to a half-life that is too long for common imaging purposes. Besides, it may also cause a poor tissue penetration rate and thus compromise some medical applications. It is under this context that various engineered protein probes, essentially antibody fragments, protein scaffolds, and natural ligands have been developed. Compared to intact antibodies, they possess more compact size, shorter clearance time, and better tumor penetration. One major challenge of using protein probes in molecular imaging is the affected biological activity resulted from random labeling. Site-specific modification, however, allows conjugation happening in a stoichiometric fashion with little perturbation of protein activity. The present review will discuss protein-based probes with focus on their application and related site-specific conjugation strategies in tumor imaging. PMID:20232092

  7. Geometrical measures of the similarity of gray-scale images

    NASA Astrophysics Data System (ADS)

    Starovoitov, Valery V.

    1995-08-01

    There are papers describing measures of correspondence or similarity between two binary images or their parts, but only two papers suggest a measure for a comparison of objects of two grey-scale images. However, there are numerous applications of a measure for grey-scale images as whole entities. A useful application is the comparison of different algorithms devoted to the same task (edge detection, thresholding, image enhancement, segmentation and image reconstruction). This paper proposes some results to define such a measure. They are based on two different representations of grey-scale images: as `surfaces' and as `stacks' or umbra. We study an adaptation of some known formulas used for binary images to grey-scale images, and present a geometrical variant of such a measurement. We study different measures of diversity, based on different digital metrics, direct calculations of distances, and digital functions adapted to grey-scale images. We show that the `stack' representation needs more calculation time and that measures based on the representation are not sensitive to small image shifts, but very sensitive to noise.

  8. Analyser-based phase contrast image reconstruction using geometrical optics.

    PubMed

    Kitchen, M J; Pavlov, K M; Siu, K K W; Menk, R H; Tromba, G; Lewis, R A

    2007-07-21

    Analyser-based phase contrast imaging can provide radiographs of exceptional contrast at high resolution (<100 microm), whilst quantitative phase and attenuation information can be extracted using just two images when the approximations of geometrical optics are satisfied. Analytical phase retrieval can be performed by fitting the analyser rocking curve with a symmetric Pearson type VII function. The Pearson VII function provided at least a 10% better fit to experimentally measured rocking curves than linear or Gaussian functions. A test phantom, a hollow nylon cylinder, was imaged at 20 keV using a Si(1 1 1) analyser at the ELETTRA synchrotron radiation facility. Our phase retrieval method yielded a more accurate object reconstruction than methods based on a linear fit to the rocking curve. Where reconstructions failed to map expected values, calculations of the Takagi number permitted distinction between the violation of the geometrical optics conditions and the failure of curve fitting procedures. The need for synchronized object/detector translation stages was removed by using a large, divergent beam and imaging the object in segments. Our image acquisition and reconstruction procedure enables quantitative phase retrieval for systems with a divergent source and accounts for imperfections in the analyser.

  9. Quantum Image Encryption and Decryption Algorithms Based on Quantum Image Geometric Transformations

    NASA Astrophysics Data System (ADS)

    Zhou, Ri-Gui; Wu, Qian; Zhang, Man-Qun; Shen, Chen-Yi

    2013-06-01

    Cryptography is the essential subject for network information security to protect important data. Although following the symmetric cryptosystem for which the participations in the communication keep exactly the same keys, the special for the encryption and decryption algorithms proposed in this paper lays in the operational objectives, the quantum image. Firstly, extracts the properties of gray-scale and position from the quantum gray-scale image which the storage expression of image in quantum states is achieved. Along with the geometric transformations in classical images, this article realizes the quantum image geometric transforms by means of designing quantum circuits. Eventually, through a combination of the proposals in previous, the encryption and decryption algorithms on quantum gray-scale images is finally accomplished, which could ensure the confidentiality and security of the information in delivery. The algorithms belong to the application of quantum image geometric transformations, for further, the new explorations for quantum image cryptography researches.

  10. Geometric error analysis for shuttle imaging spectrometer experiment

    NASA Technical Reports Server (NTRS)

    Wang, S. J.; Ih, C. H.

    1984-01-01

    The demand of more powerful tools for remote sensing and management of earth resources steadily increased over the last decade. With the recent advancement of area array detectors, high resolution multichannel imaging spectrometers can be realistically constructed. The error analysis study for the Shuttle Imaging Spectrometer Experiment system is documented for the purpose of providing information for design, tradeoff, and performance prediction. Error sources including the Shuttle attitude determination and control system, instrument pointing and misalignment, disturbances, ephemeris, Earth rotation, etc., were investigated. Geometric error mapping functions were developed, characterized, and illustrated extensively with tables and charts. Selected ground patterns and the corresponding image distortions were generated for direct visual inspection of how the various error sources affect the appearance of the ground object images.

  11. A Geometric Crescent Model for Black Hole Images

    NASA Astrophysics Data System (ADS)

    Kamruddin, Ayman Bin; Dexter, J.

    2013-01-01

    The Event Horizon Telescope (EHT), a global very long baseline interferometry array operating at millimeter wavelengths, is spatially resolving the immediate environment of black holes for the first time. The current observations of the Galactic center black hole, Sagittarius A* (Sgr A*), have been interpreted in terms of unmotivated geometric models (e.g., a symmetric Gaussian) or detailed calculations involving accretion onto a black hole. The latter are subject to large systematic uncertainties. Motivated by relativistic effects around black holes, we propose a geometric crescent model for black hole images. We show that this simple model provides an excellent statistical description of the existing EHT data of Sgr A*, superior to the Gaussian. It also closely matches physically predicted models, bridging accretion theory and observation. Based on our results, we make predictions for future observations for the accessibility of the black hole shadow, direct evidence for a black hole event horizon.

  12. Studying developmental variation with Geometric Morphometric Image Analysis (GMIA).

    PubMed

    Mayer, Christine; Metscher, Brian D; Müller, Gerd B; Mitteroecker, Philipp

    2014-01-01

    The ways in which embryo development can vary across individuals of a population determine how genetic variation translates into adult phenotypic variation. The study of developmental variation has been hampered by the lack of quantitative methods for the joint analysis of embryo shape and the spatial distribution of cellular activity within the developing embryo geometry. By drawing from the strength of geometric morphometrics and pixel/voxel-based image analysis, we present a new approach for the biometric analysis of two-dimensional and three-dimensional embryonic images. Well-differentiated structures are described in terms of their shape, whereas structures with diffuse boundaries, such as emerging cell condensations or molecular gradients, are described as spatial patterns of intensities. We applied this approach to microscopic images of the tail fins of larval and juvenile rainbow trout. Inter-individual variation of shape and cell density was found highly spatially structured across the tail fin and temporally dynamic throughout the investigated period.

  13. Efficient hyperspectral image segmentation using geometric active contour formulation

    NASA Astrophysics Data System (ADS)

    Albalooshi, Fatema A.; Sidike, Paheding; Asari, Vijayan K.

    2014-10-01

    In this paper, we present a new formulation of geometric active contours that embeds the local hyperspectral image information for an accurate object region and boundary extraction. We exploit self-organizing map (SOM) unsupervised neural network to train our model. The segmentation process is achieved by the construction of a level set cost functional, in which, the dynamic variable is the best matching unit (BMU) coming from SOM map. In addition, we use Gaussian filtering to discipline the deviation of the level set functional from a signed distance function and this actually helps to get rid of the re-initialization step that is computationally expensive. By using the properties of the collective computational ability and energy convergence capability of the active control models (ACM) energy functional, our method optimizes the geometric ACM energy functional with lower computational time and smoother level set function. The proposed algorithm starts with feature extraction from raw hyperspectral images. In this step, the principal component analysis (PCA) transformation is employed, and this actually helps in reducing dimensionality and selecting best sets of the significant spectral bands. Then the modified geometric level set functional based ACM is applied on the optimal number of spectral bands determined by the PCA. By introducing local significant spectral band information, our proposed method is capable to force the level set functional to be close to a signed distance function, and therefore considerably remove the need of the expensive re-initialization procedure. To verify the effectiveness of the proposed technique, we use real-life hyperspectral images and test our algorithm in varying textural regions. This framework can be easily adapted to different applications for object segmentation in aerial hyperspectral imagery.

  14. Characterizing geometric accuracy and precision in image guided gated radiotherapy

    NASA Astrophysics Data System (ADS)

    Tenn, Stephen Edward

    Gated radiotherapy combined with intensity modulated or three-dimensional conformal radiotherapy for tumors in the thorax and abdomen can deliver dose distributions which conform closely to tumor shapes allowing increased tumor dose while sparing healthy tissues. These conformal fields require more accurate and precise placement than traditional fields or tumors may receive suboptimal dose thereby reducing tumor control probability. Image guidance based on four-dimensional computed tomography (4DCT) provides a means to improve accuracy and precision in radiotherapy. The ability of 4DCT to accurately reproduce patient geometry and the ability of image guided gating equipment to position tumors and place fields around them must be characterized in order to determine treatment parameters such as tumor margins. Fiducial based methods of characterizing accuracy and precision of equipment for 4DCT planning and image guided gated radiotherapy (IGGRT) are presented with results for specific equipment. Fiducial markers of known geometric orientation are used to characterize 4DCT image reconstruction accuracy. Accuracy is determined under different acquisition protocols, reconstruction phases, and phantom trajectories. Targeting accuracy of fiducial based image guided gating is assessed by measuring in-phantom field positions for different motions, gating levels and target rotations. Synchronization parameters for gating equipment are also determined. Finally, end-to-end testing is performed to assess overall accuracy and precision of the equipment under controlled conditions. 4DCT limits fiducial geometric distance errors to 2 mm for repeatable target trajectories and to 5 mm for a pseudo-random trajectory. Largest offsets were in the longitudinal direction. If correctly calibrated and synchronized, the IGGRT system tested here can target reproducibly moving tumors with accuracy better than 1.2 mm. Gating level can affect accuracy if target motion is asymmetric about the

  15. A geometric crescent model for black hole images

    NASA Astrophysics Data System (ADS)

    Kamruddin, Ayman Bin; Dexter, Jason

    2013-09-01

    The Event Horizon Telescope (EHT), a global very long baseline interferometry array operating at millimetre wavelengths, is spatially resolving the immediate environments of black holes for the first time. The current observations of the Galactic centre black hole, Sagittarius A* (Sgr A*), and M87 have been interpreted in terms of either geometric models (e.g. a symmetric Gaussian) or detailed calculations of the appearance of black hole accretion flows. The former are not physically motivated, while the latter are subject to large systematic uncertainties. Motivated by the dominant relativistic effects of Doppler beaming and gravitational lensing in many calculations, we propose a geometric crescent model for black hole images. We show that this simple model provides an excellent statistical description of the existing EHT data of Sgr A* and M87, superior to other geometric models for Sgr A*. It also qualitatively matches physically predicted models, bridging accretion theory and observation. Based on our results, we make predictions for the detectability of the black hole shadow, a signature of strong gravity, in future observations.

  16. D Image Based Geometric Documentation of the Tower of Winds

    NASA Astrophysics Data System (ADS)

    Tryfona, M. S.; Georgopoulos, A.

    2016-06-01

    This paper describes and investigates the implementation of almost entirely image based contemporary techniques for the three dimensional geometric documentation of the Tower of the Winds in Athens, which is a unique and very special monument of the Roman era. These techniques and related algorithms were implemented using a well-known piece of commercial software with extreme caution in the selection of the various parameters. Problems related to data acquisition and processing, but also to the algorithms and to the software implementation are identified and discussed. The resulting point cloud has been georeferenced, i.e. referenced to a local Cartesian coordinate system through minimum geodetic measurements, and subsequently the surface, i.e. the mesh was created and finally the three dimensional textured model was produced. In this way, the geometric documentation drawings, i.e. the horizontal section plans, the vertical section plans and the elevations, which include orthophotos of the monument, can be produced at will from that 3D model, for the complete geometric documentation. Finally, a 3D tour of the Tower of the Winds has also been created for a more integrated view of the monument. The results are presented and are evaluated for their completeness, efficiency, accuracy and ease of production.

  17. Luminescent probes for optical in vivo imaging

    NASA Astrophysics Data System (ADS)

    Texier, Isabelle; Josserand, Veronique; Garanger, Elisabeth; Razkin, Jesus; Jin, Zhaohui; Dumy, Pascal; Favrot, Marie; Boturyn, Didier; Coll, Jean-Luc

    2005-04-01

    Going along with instrumental development for small animal fluorescence in vivo imaging, we are developing molecular fluorescent probes, especially for tumor targeting. Several criteria have to be taken into account for the optimization of the luminescent label. It should be adapted to the in vivo imaging optical conditions : red-shifted absorption and emission, limited overlap between absorption and emission for a good signal filtering, optimized luminescence quantum yield, limited photo-bleaching. Moreover, the whole probe should fulfill the biological requirements for in vivo labeling : adapted blood-time circulation, biological conditions compatibility, low toxicity. We here demonstrate the ability of the imaging fluorescence set-up developed in LETI to image the bio-distribution of molecular probes on short times after injection. Targeting with Cy5 labeled holo-transferrin of subcutaneous TS/Apc (angiogenic murine breast carcinoma model) or IGROV1 (human ovarian cancer) tumors was achieved. Differences in the kinetics of the protein uptake by the tumors were evidenced. IGROV1 internal metastatic nodes implanted in the peritoneal cavity could be detected in nude mice. However, targeted metastatic nodes in lung cancer could only be imaged after dissection of the mouse. These results validate our fluorescence imaging set-up and the use of Cy5 as a luminescent label. New fluorescent probes based on this dye and a molecular delivery template (the RAFT molecule) can thus be envisioned.

  18. Lymphatic Imaging: Focus on Imaging Probes

    PubMed Central

    Niu, Gang; Chen, Xiaoyuan

    2015-01-01

    In view of the importance of sentinel lymph nodes (SLNs) in tumor staging and patient management, sensitive and accurate imaging of SLNs has been intensively explored. Along with the advance of the imaging technology, various contrast agents have been developed for lymphatic imaging. In this review, the lymph node imaging agents were summarized into three groups: tumor targeting agents, lymphatic targeting agents and lymphatic mapping agents. Tumor targeting agents are used to detect metastatic tumor tissue within LNs, lymphatic targeting agents aim to visualize lymphatic vessels and lymphangionesis, while lymphatic mapping agents are mainly for SLN detection during surgery after local administration. Coupled with various signal emitters, these imaging agents work with single or multiple imaging modalities to provide a valuable way to evaluate the location and metastatic status of SLNs. PMID:25897334

  19. Image processing for HTS SQUID probe microscope

    NASA Astrophysics Data System (ADS)

    Hayashi, T.; Koetitz, R.; Itozaki, H.; Ishikawa, T.; Kawabe, U.

    2005-10-01

    An HTS SQUID probe microscope has been developed using a high-permeability needle to enable high spatial resolution measurement of samples in air even at room temperature. Image processing techniques have also been developed to improve the magnetic field images obtained from the microscope. Artifacts in the data occur due to electromagnetic interference from electric power lines, line drift and flux trapping. The electromagnetic interference could successfully be removed by eliminating the noise peaks from the power spectrum of fast Fourier transforms of line scans of the image. The drift between lines was removed by interpolating the mean field value of each scan line. Artifacts in line scans occurring due to flux trapping or unexpected noise were removed by the detection of a sharp drift and interpolation using the line data of neighboring lines. Highly detailed magnetic field images were obtained from the HTS SQUID probe microscope by the application of these image processing techniques.

  20. A geometric approach to multi-view compressive imaging

    NASA Astrophysics Data System (ADS)

    Park, Jae Young; Wakin, Michael B.

    2012-12-01

    In this paper, we consider multi-view imaging problems in which an ensemble of cameras collect images describing a common scene. To simplify the acquisition and encoding of these images, we study the effectiveness of non-collaborative compressive sensing encoding schemes wherein each sensor directly and independently compresses its image using randomized measurements. After these measurements and also perhaps the camera positions are transmitted to a central node, the key to an accurate reconstruction is to fully exploit the joint correlation among the signal ensemble. To capture such correlations, we propose a geometric modeling framework in which the image ensemble is treated as a sampling of points from a low-dimensional manifold in the ambient signal space. Building on results that guarantee stable embeddings of manifolds under random measurements, we propose a "manifold lifting" algorithm for recovering the ensemble that can operate even without knowledge of the camera positions. We divide our discussion into two scenarios, the near-field and far-field cases, and describe how the manifold lifting algorithm could be applied to these scenarios. At the end of this paper, we present an in-depth case study of a far-field imaging scenario, where the aim is to reconstruct an ensemble of satellite images taken from different positions with limited but overlapping fields of view. In this case study, we demonstrate the impressive power of random measurements to capture single- and multi-image structure without explicitly searching for it, as the randomized measurement encoding in conjunction with the proposed manifold lifting algorithm can even outperform image-by-image transform coding.

  1. The image registration of multi-band images by geometrical optics

    NASA Astrophysics Data System (ADS)

    Yan, Yung-Jhe; Chiang, Hou-Chi; Tsai, Yu-Hsiang; Huang, Ting-Wei; Mang, Ou-Yang

    2015-09-01

    The image fusion is combination of two or more images into one image. The fusion of multi-band spectral images has been in many applications, such as thermal system, remote sensing, medical treatment, etc. Images are taken with the different imaging sensors. If the sensors take images through the different optical paths in the same time, it will be in the different positions. The task of the image registration will be more difficult. Because the images are in the different field of views (F.O.V.), the different resolutions and the different view angles. It is important to build the relationship of the viewpoints in one image to the other image. In this paper, we focus on the problem of image registration for two non-pinhole sensors. The affine transformation between the 2-D image and the 3-D real world can be derived from the geometrical optics of the sensors. In the other word, the geometrical affine transformation function of two images are derived from the intrinsic and extrinsic parameters of two sensors. According to the affine transformation function, the overlap of the F.O.V. in two images can be calculated and resample two images in the same resolution. Finally, we construct the image registration model by the mapping function. It merges images for different imaging sensors. And, imaging sensors absorb different wavebands of electromagnetic spectrum at the different position in the same time.

  2. Probing Leader Cells in Endothelial Collective Migration by Plasma Lithography Geometric Confinement.

    PubMed

    Yang, Yongliang; Jamilpour, Nima; Yao, Baoyin; Dean, Zachary S; Riahi, Reza; Wong, Pak Kin

    2016-03-03

    When blood vessels are injured, leader cells emerge in the endothelium to heal the wound and restore the vasculature integrity. The characteristics of leader cells during endothelial collective migration under diverse physiological conditions, however, are poorly understood. Here we investigate the regulation and function of endothelial leader cells by plasma lithography geometric confinement generated. Endothelial leader cells display an aggressive phenotype, connect to follower cells via peripheral actin cables and discontinuous adherens junctions, and lead migrating clusters near the leading edge. Time-lapse microscopy, immunostaining, and particle image velocimetry reveal that the density of leader cells and the speed of migrating clusters are tightly regulated in a wide range of geometric patterns. By challenging the cells with converging, diverging and competing patterns, we show that the density of leader cells correlates with the size and coherence of the migrating clusters. Collectively, our data provide evidence that leader cells control endothelial collective migration by regualting the migrating clusters.

  3. Probing Leader Cells in Endothelial Collective Migration by Plasma Lithography Geometric Confinement

    NASA Astrophysics Data System (ADS)

    Yang, Yongliang; Jamilpour, Nima; Yao, Baoyin; Dean, Zachary S.; Riahi, Reza; Wong, Pak Kin

    2016-03-01

    When blood vessels are injured, leader cells emerge in the endothelium to heal the wound and restore the vasculature integrity. The characteristics of leader cells during endothelial collective migration under diverse physiological conditions, however, are poorly understood. Here we investigate the regulation and function of endothelial leader cells by plasma lithography geometric confinement generated. Endothelial leader cells display an aggressive phenotype, connect to follower cells via peripheral actin cables and discontinuous adherens junctions, and lead migrating clusters near the leading edge. Time-lapse microscopy, immunostaining, and particle image velocimetry reveal that the density of leader cells and the speed of migrating clusters are tightly regulated in a wide range of geometric patterns. By challenging the cells with converging, diverging and competing patterns, we show that the density of leader cells correlates with the size and coherence of the migrating clusters. Collectively, our data provide evidence that leader cells control endothelial collective migration by regualting the migrating clusters.

  4. Errors Associated With Measurements from Imaging Probes

    NASA Astrophysics Data System (ADS)

    Heymsfield, A.; Bansemer, A.

    2015-12-01

    Imaging probes, collecting data on particles from about 20 or 50 microns to several centimeters, are the probes that have been collecting data on the droplet and ice microphysics for more than 40 years. During that period, a number of problems associated with the measurements have been identified, including questions about the depth of field of particles within the probes' sample volume, and ice shattering, among others, have been identified. Many different software packages have been developed to process and interpret the data, leading to differences in the particle size distributions and estimates of the extinction, ice water content and radar reflectivity obtained from the same data. Given the numerous complications associated with imaging probe data, we have developed an optical array probe simulation package to explore the errors that can be expected with actual data. We simulate full particle size distributions with known properties, and then process the data with the same software that is used to process real-life data. We show that there are significant errors in the retrieved particle size distributions as well as derived parameters such as liquid/ice water content and total number concentration. Furthermore, the nature of these errors change as a function of the shape of the simulated size distribution and the physical and electronic characteristics of the instrument. We will introduce some methods to improve the retrieval of particle size distributions from real-life data.

  5. Geometrical Meaning of Arithmetic Series [Image Omitted], [Image Omitted] and [Image Omitted] in Terms of the Elementary Combinatorics

    ERIC Educational Resources Information Center

    Kobayashi, Yukio

    2011-01-01

    The formula [image omitted] is closely related to combinatorics through an elementary geometric exercise. This approach can be expanded to the formulas [image omitted], [image omitted] and [image omitted]. These formulas are also nice examples of showing two approaches, one algebraic and one combinatoric, to a problem of counting. (Contains 6…

  6. Targeted Probes for Cardiovascular MR Imaging

    PubMed Central

    Uppal, Ritika; Caravan, Peter

    2010-01-01

    Background Molecular magnetic resonance (MR) imaging plays an important role in studying molecular and cellular processes associated with heart disease. Targeted probes that recognize important biomarkers of atherosclerosis, apoptosis, necrosis, angiogenesis, thrombosis and inflammation have been developed. Discussion This review discusses properties of chemically different types of contrast agents including iron oxide nanoparticles, gadolinium based nanoparticles or micelles, discrete peptide conjugates and activatable probes. Numerous examples of contrast agents based on these approaches have been used in preclinical MR imaging of cardiovascular diseases. Clinical applications are still under investigation for some selected agents with highly promising initial results. Conclusion Molecular MR imaging shows great potential for the detection, characterization of a wide range of cardiovascular diseases and for monitoring response to therapy. PMID:20539821

  7. Molecular imaging probe development: a chemistry perspective

    PubMed Central

    Nolting, Donald D; Nickels, Michael L; Guo, Ning; Pham, Wellington

    2012-01-01

    Molecular imaging is an attractive modality that has been widely employed in many aspects of biomedical research; especially those aimed at the early detection of diseases such as cancer, inflammation and neurodegenerative disorders. The field emerged in response to a new research paradigm in healthcare that seeks to integrate detection capabilities for the prediction and prevention of diseases. This approach made a distinct impact in biomedical research as it enabled researchers to leverage the capabilities of molecular imaging probes to visualize a targeted molecular event non-invasively, repeatedly and continuously in a living system. In addition, since such probes are inherently compact, robust, and amenable to high-throughput production, these probes could potentially facilitate screening of preclinical drug discovery, therapeutic assessment and validation of disease biomarkers. They could also be useful in drug discovery and safety evaluations. In this review, major trends in the chemical synthesis and development of positron emission tomography (PET), optical and magnetic resonance imaging (MRI) probes are discussed. PMID:22943038

  8. Switchable bi-stable multilayer magnetic probes for imaging of soft magnetic structures.

    PubMed

    Wren, Tom; Puttock, Robb; Gribkov, Boris; Vdovichev, Sergey; Kazakova, Olga

    2017-03-28

    We present the use of custom-made multilayer (ML) magnetic probes in magnetic force microscopy (MFM) for imaging soft magnetic structures, i.e. nickel submicron disks of different dimensions. One of the main advantages of a custom-made ML probe is that it can be controllably switched between standard (parallel) and low moment (antiparallel) states. We demonstrate that the predicted vortex and stripe domain states in the disks are observed when using the ML probes both in the antiparallel and parallel states. However, while the phase contrast is significantly larger in the parallel state, the images are dominated by strong sample - probe interactions that obscure the image. By comparison of the stripe domain width observed by MFM with the ML probe and those expected from the Kittel model, we show that the resolution of the probe in the AP and P states is ∼30-40nm, i.e. of the order of the probe geometrical apex and thus approaching the limit of spatial resolution. The ML probes are further compared to the commercial standard and low moment ones, showing that the quality of images obtained with the ML probe is superior to both commercial probes.

  9. Data and image fusion for geometrical cloud characterization

    SciTech Connect

    Thorne, L.R.; Buch, K.A.; Sun, Chen-Hui; Diegert, C.

    1997-04-01

    Clouds have a strong influence on the Earth`s climate and therefore on climate change. An important step in improving the accuracy of models that predict global climate change, general circulation models, is improving the parameterization of clouds and cloud-radiation interactions. Improvements in the next generation models will likely include the effect of cloud geometry on the cloud-radiation parameterizations. We have developed and report here methods for characterizing the geometrical features and three-dimensional properties of clouds that could be of significant value in developing these new parameterizations. We developed and report here a means of generating and imaging synthetic clouds which we used to test our characterization algorithms; a method for using Taylor`s hypotheses to infer spatial averages from temporal averages of cloud properties; a computer method for automatically classifying cloud types in an image; and a method for producing numerical three-dimensional renderings of cloud fields based on the fusion of ground-based and satellite images together with meteorological data.

  10. Geometric distortion of area in medical ultrasound images

    NASA Astrophysics Data System (ADS)

    Bland, T.; Tong, J.; Ward, B.; Parker, N. G.

    2017-01-01

    Medical ultrasound scanners are typically calibrated to a speed of sound corresponding to the soft tissue average of 1540 m s-1. In regions of different sound speed, for example, organs and tumours, the B-mode image becomes geometrically distorted from the true tissue cross-section, due to refraction and the misrepresentation of length. A ray model is developed to predict this distortion for a generalized two-dimensional object with atypical speed of sound, and verified against ultrasound images of a test object. We quantify the areal image distortion as a function of the key dependencies, including the speed of sound mismatch, the scanning format, the object size and its elongation. Our findings show that the distortion of area can be significant, even for relatively small speed of sound mismatches. For example, a 5% speed mismatch typically leads to a 10 - 20% distortion in area. These findings have implications for the accuracy of ultrasound-based evaluation of area and volume.

  11. Black-hole horizons as probes of black-hole dynamics. II. Geometrical insights

    NASA Astrophysics Data System (ADS)

    Jaramillo, José Luis; Macedo, Rodrigo P.; Moesta, Philipp; Rezzolla, Luciano

    2012-04-01

    In a companion paper [J. L. Jaramillo, R. P. Macedo, P. Moesta, and L. Rezzolla, preceding Article, Phys. Rev. DPRVDAQ1550-7998 85, 084030 (2012).], we have presented a cross-correlation approach to near-horizon physics in which bulk dynamics is probed through the correlation of quantities defined at inner and outer spacetime hypersurfaces acting as test screens. More specifically, dynamical horizons provide appropriate inner screens in a 3+1 setting and, in this context, we have shown that an effective-curvature vector measured at the common horizon produced in a head-on collision merger can be correlated with the flux of linear Bondi momentum at null infinity. In this paper we provide a more sound geometric basis to this picture. First, we show that a rigidity property of dynamical horizons, namely, foliation uniqueness, leads to a preferred class of null tetrads and Weyl scalars on these hypersurfaces. Second, we identify a heuristic horizon newslike function, depending only on the geometry of spatial sections of the horizon. Fluxes constructed from this function offer refined geometric quantities to be correlated with Bondi fluxes at infinity, as well as a contact with the discussion of quasilocal 4-momentum on dynamical horizons. Third, we highlight the importance of tracking the internal horizon dual to the apparent horizon in spatial 3-slices when integrating fluxes along the horizon. Finally, we discuss the link between the dissipation of the nonstationary part of the horizon’s geometry with the viscous-fluid analogy for black holes, introducing a geometric prescription for a “slowness parameter” in black-hole recoil dynamics.

  12. Probing surface plasmons by bare V-shaped tips: modeling by geometrical optics and rigorous diffraction theory

    NASA Astrophysics Data System (ADS)

    Bose, Gaurav; Hyvärinen, Heikki J.; Tervo, Jani; Turunen, Jari

    2017-02-01

    We consider probing inhomogeneous waves in the near fields of metallic nanostructures with the aid of a dielectric V-shaped wedge connected to a waveguide. A geometrical model based on the local plane interface approach is proposed to describe the interaction of the wedge with the inhomogeneous field. The fundamental ideas behind the geometrical model are validated by comparison with the results given by rigorous diffraction analysis, and applied to probing plasmonic interference patterns generated by metallic gratings with very narrow slits. The model explains intuitively why a bare wedge with a large apex angle is capable of subwavelength resolution in the spirit of scanning near-field microscopy.

  13. Optimum imaging time selection algorithm for inverse synthetic aperture radar images using geometric features and image gradient

    NASA Astrophysics Data System (ADS)

    Fulin, Su; Hongxin, Yang

    2016-07-01

    For better using of inverse synthetic aperture radar (ISAR) images of ship targets, it is more desirable to select a proper imaging time to obtain high quality top-view or side-view images. However, optimum imaging time selection is not robust enough for the restriction of traditional geometric feature extraction methods. In our study, we propose a method based on the geometric features and gradient maximization. First, we select the imaging instant from radar echoes by the centerline and mainmast of the ship. In this part, we propose a geometric features extraction method to improve the robustness of instant selection in different scenarios. Then, an image gradient maximization is employed to estimate the period for ISAR imaging. Finally, experimental results of both simulated and real signals are provided to demonstrate the effectiveness and practicability of the algorithm.

  14. Validating Transcripts with Probes and Imaging Technology

    PubMed Central

    Itzkovitz, Shalev; van Oudenaarden, Alexander

    2011-01-01

    High throughput gene expression screens provide a quantitative picture of the average expression signature of biological samples. However, the analysis of spatial gene expression patterns with single cell resolution requires quantitative in-situ measurement techniques. Here we describe recent technological advances in RNA fluorescent in-situ hybridization (FISH) techniques that facilitate detection of individual fluorescently labeled mRNA molecules of practically any endogenous gene. These methods, which are based on advances in probe design, imaging technology, and image processing, enable the absolute measurement of transcript abundance in individual cells with single-molecule resolution. PMID:21451512

  15. Multimode-Optical-Fiber Imaging Probe

    NASA Technical Reports Server (NTRS)

    Jackson, Deborah

    1999-01-01

    Currently, endoscopic surgery uses single-mode fiber-bundles to obtain in vivo image information inside the orifices of the body. This limits their use to the larger natural orifices and to surgical procedures where there is plenty of room for manipulation. The knee joint, for example, can be easily viewed with a fiber optic viewer, but joints in the finger cannot. However, there are a host of smaller orifices where fiber endoscopy would play an important role if a cost effective fiber probe were developed with small enough dimensions (less than or equal to 250 microns). Examples of beneficiaries of micro-endoscopes are the treatment of the Eustatian tube of the middle ear, the breast ducts, tear ducts, coronary arteries, fallopian tubes, as well as the treatment of salivary duct parotid disease, and the neuro endoscopy of the ventricles and spinal canal. This work describes an approach for recovering images from tightly confined spaces using multimode. The concept draws upon earlier works that concentrated on image recovery after two-way transmission through a multimode fiber as well as work that demonstrated the recovery of images after one-way transmission through a multimode fiber. Both relied on generating a phase conjugated wavefront, which was predistorted with the characteristics of the fiber. The approach described here also relies on generating a phase conjugated wavefront, but utilizes two fibers to capture the image at some intermediate point (accessible by the fibers, but which is otherwise visually inaccessible).

  16. Blind Forensics of Successive Geometric Transformations in Digital Images using Spectral Method: Theory and Applications.

    PubMed

    Ni, Jiangqun; Chen, Chenglong; Shen, Zhaoyi; Shi, Yun-Qing

    2017-03-15

    Geometric transformations, such as resizing and rotation, are almost always needed when two or more images are spliced together to create convincing image forgeries. In recent years, researchers have developed many digital forensic techniques to identify these operations. Most previous works in this area focus on the analysis of images that have undergone single geometric transformations, e.g., resizing or rotation. In several recent works, researchers have addressed yet another practical and realistic situation: successive geometric transformations, e.g., repeated resizing, resizing-rotation, rotation-resizing, and repeated rotation. We will also concentrate on this topic in this paper. Specifically, we present an in-depth analysis in the frequency domain of the second-order statistics of the geometrically transformed images. We give an exact formulation of how the parameters of the first and second geometric transformations influence the appearance of periodic artifacts. The expected positions of characteristic resampling peaks are analytically derived. The theory developed here helps to address the gap left by previous works on this topic and is useful for image security and authentication, in particular, the forensics of geometric transformations in digital images. As an application of the developed theory, we present an effective method that allows one to distinguish between the aforementioned four different processing chains. The proposed method can further estimate all the geometric transformation parameters. This may provide useful clues for image forgery detection.

  17. Optical brush: Imaging through permuted probes

    PubMed Central

    Heshmat, Barmak; Lee, Ik Hyun; Raskar, Ramesh

    2016-01-01

    The combination of computational techniques and ultrafast imaging have enabled sensing through unconventional settings such as around corners, and through diffusive media. We exploit time of flight (ToF) measurements to enable a flexible interface for imaging through permuted set of fibers. The fibers are randomly distributed in the scene and are packed on the camera end, thus making a brush-like structure. The scene is illuminated by two off-axis optical pulses. Temporal signatures of fiber tips in the scene are used to localize each fiber. Finally, by combining the position and measured intensity of each fiber, the original input is reconstructed. Unlike conventional fiber bundles with packed set of fibers that are limited by a narrow field of view (FOV), lack of flexibility, and extended coaxial precalibration, the proposed optical brush is flexible and uses off-axis calibration method based on ToF. The enabled brush form can couple to other types of ToF imaging systems. This can impact probe-based applications such as, endoscopy, tomography, and industrial imaging and sensing. PMID:26868954

  18. Biomedical applications of a new portable Raman imaging probe

    NASA Astrophysics Data System (ADS)

    Sato, Hidetoshi; Tanaka, Takeyuki; Ikeda, Teruki; Wada, Satoshi; Tashiro, Hideo; Ozaki, Yukihiro

    2001-10-01

    This article reports the outline of a new portable Raman imaging probe and its applications. This probe may be the smallest and lightest Raman imaging probe in the world. It is equipped with an interchangeable long-working distance microscope objective lens. The irradiation area is about 45 and 90 μm and the spatial resolution is 1 μm. In the present study, the Raman imaging probe was used to obtain a Raman image of diamond particles and a Raman mapping of carotenoid in Euglena.

  19. Multimode-Optical-Fiber Imaging Probe

    NASA Technical Reports Server (NTRS)

    Jackson, Deborah

    2000-01-01

    Currently, endoscopic surgery uses single-mode fiber-bundles to obtain in vivo image information inside orifices of the body. This limits their use to the larger natural bodily orifices and to surgical procedures where there is plenty of room for manipulation. The knee joint, for example can be easily viewed with a fiber optic viewer, but joints in the finger cannot. However, there are a host of smaller orifices where fiber endoscopy would play an important role if a cost effective fiber probe were developed with small enough dimensions (< 250 microns). Examples of beneficiaries of micro-endoscopes are the treatment of the Eustatian tube of the middle ear, the breast ducts, tear ducts, coronary arteries, fallopian tubes, as well as the treatment of salivary duct parotid disease, and the neuro endoscopy of the ventricles and spinal canal. To solve this problem, this work describes an approach for recovering images from. tightly confined spaces using multimode fibers and analytically demonstrates that the concept is sound. The proof of concept draws upon earlier works that concentrated on image recovery after two-way transmission through a multimode fiber as well as work that demonstrated the recovery of images after one-way transmission through a multimode fiber. Both relied on generating a phase conjugated wavefront which was predistorted with the characteristics of the fiber. The described approach also relies on generating a phase conjugated wavefront, but utilizes two fibers to capture the image at some intermediate point (accessible by the fibers, but which is otherwise visually unaccessible).

  20. Raman tags: Novel optical probes for intracellular sensing and imaging.

    PubMed

    Li, Yuee; Wang, Zhong; Mu, Xijiao; Ma, Aning; Guo, Shu

    Optical labels are needed for probing specific target molecules in complex biological systems. As a newly emerging category of tags for molecular imaging in live cells, the Raman label attracts much attention because of the rich information obtained from targeted and untargeted molecules by detecting molecular vibrations. Here, we list three types of Raman probes based on different mechanisms: Surface Enhanced Raman Scattering (SERS) probes, bioorthogonal Raman probes, and Resonance Raman (RR) probes. We review how these Raman probes work for detecting and imaging proteins, nucleic acids, lipids, and other biomolecules in vitro, within cells, or in vivo. We also summarize recent noteworthy studies, expound on the construction of every type of Raman probe and operating principle, sum up in tables typically targeting molecules for specific binding, and provide merits, drawbacks, and future prospects for the three Raman probes.

  1. A case for inherent geometric and geodetic accuracy in remotely sensed VNIR and SWIR imaging products

    NASA Technical Reports Server (NTRS)

    Driver, J. M.

    1982-01-01

    Significant aberrations can occur in acquired images which, unless compensated on board the spacecraft, can seriously impair throughput and timeliness for typical Earth observation missions. Conceptual compensations options are advanced to enable acquisition of images with inherent geometric and geodetic accuracy. Research needs are identified which, when implemented, can provide inherently accurate images. Agressive pursuit of these research needs is recommended.

  2. Airborne Linear Array Image Geometric Rectification Method Based on Unequal Segmentation

    NASA Astrophysics Data System (ADS)

    Li, J. M.; Li, C. R.; Zhou, M.; Hu, J.; Yang, C. M.

    2016-06-01

    As the linear array sensor such as multispectral and hyperspectral sensor has great potential in disaster monitoring and geological survey, the quality of the image geometric rectification should be guaranteed. Different from the geometric rectification of airborne planar array images or multi linear array images, exterior orientation elements need to be determined for each scan line of single linear array images. Internal distortion persists after applying GPS/IMU data directly to geometrical rectification. Straight lines may be curving and jagged. Straight line feature -based geometrical rectification algorithm was applied to solve this problem, whereby the exterior orientation elements were fitted by piecewise polynomial and evaluated with the straight line feature as constraint. However, atmospheric turbulence during the flight is unstable, equal piecewise can hardly provide good fitting, resulting in limited precision improvement of geometric rectification or, in a worse case, the iteration cannot converge. To solve this problem, drawing on dynamic programming ideas, unequal segmentation of line feature-based geometric rectification method is developed. The angle elements fitting error is minimized to determine the optimum boundary. Then the exterior orientation elements of each segment are fitted and evaluated with the straight line feature as constraint. The result indicates that the algorithm is effective in improving the precision of geometric rectification.

  3. Landsat 8 operational land imager on-orbit geometric calibration and performance

    USGS Publications Warehouse

    Storey, James C.; Choate, Michael J.; Lee, Kenton

    2014-01-01

    The Landsat 8 spacecraft was launched on 11 February 2013 carrying the Operational Land Imager (OLI) payload for moderate resolution imaging in the visible, near infrared (NIR), and short-wave infrared (SWIR) spectral bands. During the 90-day commissioning period following launch, several on-orbit geometric calibration activities were performed to refine the prelaunch calibration parameters. The results of these calibration activities were subsequently used to measure geometric performance characteristics in order to verify the OLI geometric requirements. Three types of geometric calibrations were performed including: (1) updating the OLI-to-spacecraft alignment knowledge; (2) refining the alignment of the sub-images from the multiple OLI sensor chips; and (3) refining the alignment of the OLI spectral bands. The aspects of geometric performance that were measured and verified included: (1) geolocation accuracy with terrain correction, but without ground control (L1Gt); (2) Level 1 product accuracy with terrain correction and ground control (L1T); (3) band-to-band registration accuracy; and (4) multi-temporal image-to-image registration accuracy. Using the results of the on-orbit calibration update, all aspects of geometric performance were shown to meet or exceed system requirements.

  4. Instrumentation and probes for molecular and cellular imaging.

    PubMed

    Lecchi, M; Ottobrini, L; Martelli, C; Del Sole, A; Lucignani, G

    2007-06-01

    Molecular and cellular imaging is a branch of biomedical sciences that combines the use of imaging instrumentation and biotechnology to characterize molecular and cellular processes in living organisms in normal and pathologic conditions. The two merging areas of research behind molecular and cellular imaging are detection technology, i.e. scanners and imaging devices, and development of tracers, contrast agents and reporter probes that make imaging with scanners and devices possible. Several in vivo imaging instruments currently used in human studies, such as computer tomography, ultrasound, magnetic resonance, positron emission tomography and single photon emission computed tomography, have been rescaled for small animal studies, while other methods initially used for in vitro evaluation, such as bioluminescence and fluorescence, have been refined for in vivo imaging. Conventional imaging relies on the use of non specific contrast agents and classical probes; however, newly developed targeted contrast agents and activable ''smart'' imaging probes for so-called ''targeted imaging'' have demonstrated high specificity and high signal to noise ratio in small animal studies. This review focuses on basic recent findings in the technical aspects of molecular and cellular imaging modalities (equipment, targeted probe and contrast agents and applied combinations of instrumentation and probe) with particular attention to the choice of the future: the multimodal imaging approach.

  5. Geometric super-resolved imaging based upon axial scanning and phase retrieval.

    PubMed

    Borkowski, Amikam; Marom, Emanuel; Zalevsky, Zeev

    2014-06-20

    In this paper, we propose a new geometric super-resolving approach that overcomes the geometric resolution reduction caused by the spatially large pixels of the detector array. The improvement process is obtained by applying an axial scanning procedure. In the scanning process, several images are captured corresponding to focus applied at several axial planes. By applying an iterative Gerchberg-Saxton-based algorithm, we managed to retrieve the phase and to reconstruct the original high-resolution image from the captured set of low-resolution images. In addition, the paper also presents a numerically efficient algorithm to compute the free space Fresnel integral.

  6. Geometric Constructions for Image Formation by a Converging Lens

    ERIC Educational Resources Information Center

    Zurcher, Ulrich

    2012-01-01

    Light rays emerge from an object in all directions. In introductory texts, three "special" rays are selected to draw the image produced by lenses and mirrors. This presentation may suggest to students that these three rays are necessary for the formation of an image. We discuss that the three rays attain their "special status" from the geometric…

  7. Robust hash-based image watermarking with resistance to geometric distortions and watermark-estimation attack

    NASA Astrophysics Data System (ADS)

    Lu, Chun-Shien; Sun, Shih-Wei; Chang, Pao-Chi

    2005-03-01

    Digital watermarking provides a feasible way for copyright protection of multimedia. The major disadvantage of the existing methods is their limited resistance to both extensive geometric distortions and watermark-estimation attack (WEA). In view of this fact, this paper aims to propose a robust image watermarking scheme that can withstand geometric distortions and WEA simultaneously. Our scheme is mainly composed of two components: (i) mesh generation and embedding for resisting geometric distortions; and (ii) construction of hash-based content-dependent watermark (CDW) for resisting WEA. Extensive experimental results obtained from standard benchmark confirm the ability of our method in improving robustness.

  8. Building accurate geometric models from abundant range imaging information

    SciTech Connect

    Diegert, C.; Sackos, J.; Nellums, R.

    1997-05-01

    The authors define two simple metrics for accuracy of models built from range imaging information. They apply the metric to a model built from a recent range image taken at the Laser Radar Development and Evaluation Facility (LDERF), Eglin AFB, using a Scannerless Range Imager (SRI) from Sandia National Laboratories. They also present graphical displays of the residual information produced as a byproduct of this measurement, and discuss mechanisms that these data suggest for further improvement in the performance of this already impressive SRI.

  9. Geometric Modeling With Image Plane Integral (IPI) Holography

    NASA Astrophysics Data System (ADS)

    Lacey, D. C. L.

    1984-10-01

    Holography has long been considered to be an ideal method of visually presenting three-dimensional data which has been either experimentally acquired or mathematically calculated with a preconceived form in mind. Unfortunately, holograms have not had the image quality and accuracy to gain scientific acceptability outside the field of interferometric analysis. This paper will describe the use of an advanced composite holographic technique to give a clear, autostereoscopic image of a computer designed automotive part and a computer graphics concept of a molecule. The holograms were manufactured using Image Plane Integral (IPI) holography on an Argon laser printer designed and built by the author. The final holograms exhibited bright, achromatic, real images with high resolution and a minimum amount of controllable distortion. Additionally, because the IPI method uses a 35mm microfilmstrip for input, it could be universally applied as a hard copy format for presentation of almost any type of three-dimensional data base.

  10. Versatile robotic probe calibration for position tracking in ultrasound imaging

    NASA Astrophysics Data System (ADS)

    Eirik Bø, Lars; Fagertun Hofstad, Erlend; Lindseth, Frank; Hernes, Toril A. N.

    2015-05-01

    Within the field of ultrasound-guided procedures, there are a number of methods for ultrasound probe calibration. While these methods are usually developed for a specific probe, they are in principle easily adapted to other probes. In practice, however, the adaptation often proves tedious and this is impractical in a research setting, where new probes are tested regularly. Therefore, we developed a method which can be applied to a large variety of probes without adaptation. The method used a robot arm to move a plastic sphere submerged in water through the ultrasound image plane, providing a slow and precise movement. The sphere was then segmented from the recorded ultrasound images using a MATLAB programme and the calibration matrix was computed based on this segmentation in combination with tracking information. The method was tested on three very different probes demonstrating both great versatility and high accuracy.

  11. Adaptive descriptor based on the geometric consistency of local image features: application to flower image classification

    NASA Astrophysics Data System (ADS)

    Najjar, Asma; Zagrouba, Ezzeddine

    2016-09-01

    Geometric consistency is, usually, considered as a postprocessing step to filter matched sets of local features in order to discard outliers. In this work, it is used to propose an adaptive feature that describes the geometric dispersion of keypoints. It is based on a distribution computed by a nonparametric estimator so that no assumption is made about the data. We investigated and discussed the invariance properties of our descriptor under the most common two- and three-dimensional transformations. Then, we applied it to flower recognition. The classification is performed using the precomputed kernel of support vector machines classifier. Indeed, a similarity computing framework that uses the Kullback-Leibler divergence is presented. Furthermore, a customized layout for each flower image is designed to describe and compare separately the boundary and the central area of flowers. Experimentations made on the Oxford flower-17 dataset prove the efficiency of our method in terms of classification accuracy and computational complexity. The limits of our descriptor are also discussed on a 10-class subset of the Oxford flower-102 dataset.

  12. Geometric change detection in urban environments using images.

    PubMed

    Taneja, Aparna; Ballan, Luca; Pollefeys, Marc

    2015-11-01

    We propose a method to detect changes in the geometry of a city using panoramic images captured by a car driving around the city. The proposed method can be used to significantly optimize the process of updating the 3D model of an urban environment that is changing over time, by restricting this process to only those areas where changes are detected. With this application in mind, we designed our algorithm to specifically detect only structural changes in the environment, ignoring any changes in its appearance, and ignoring also all the changes which are not relevant for update purposes such as cars, people etc. The approach also accounts for the challenges involved in a large scale application of change detection, such as inaccuracies in the input geometry, errors in the geo-location data of the images as well as the limited amount of information due to sparse imagery. We evaluated our approach on a small scale setup using high resolution, densely captured images and a large scale setup covering an entire city using instead the more realistic scenario of low resolution, sparsely captured images. A quantitative evaluation was also conducted for the large scale setup consisting of 14,000 images.

  13. An improved image compression algorithm using binary space partition scheme and geometric wavelets.

    PubMed

    Chopra, Garima; Pal, A K

    2011-01-01

    Geometric wavelet is a recent development in the field of multivariate nonlinear piecewise polynomials approximation. The present study improves the geometric wavelet (GW) image coding method by using the slope intercept representation of the straight line in the binary space partition scheme. The performance of the proposed algorithm is compared with the wavelet transform-based compression methods such as the embedded zerotree wavelet (EZW), the set partitioning in hierarchical trees (SPIHT) and the embedded block coding with optimized truncation (EBCOT), and other recently developed "sparse geometric representation" based compression algorithms. The proposed image compression algorithm outperforms the EZW, the Bandelets and the GW algorithm. The presented algorithm reports a gain of 0.22 dB over the GW method at the compression ratio of 64 for the Cameraman test image.

  14. Joint geometric and photometric direct image registration based on Lie algebra parameterization

    NASA Astrophysics Data System (ADS)

    Li, Chenxi; Shi, Zelin; Liu, Yunpeng

    2016-10-01

    In this paper, we consider direct image registration problem which estimate the geometric and photometric transformations between two images. The efficient second-order minimization method (ESM) is based on a second-order Taylor series of image differences without computing the Hessian under brightness constancy assumption. This can be done due to the fact that the considered geometric transformations is Lie group and can be parameterized by its Lie algebra. In order to deal with lighting changes, we extend ESM to the compositional dual efficient second-order minimization method (CDESM). In our approach, the photometric transformations is parameterized by its Lie algebra with compositional operation, which is similar to that of geometric transformations. Our algorithm can give a second-order approximation of image differences with respect to geometric and photometric parameters. The geometric and photometric parameters are simultaneously obtained by non-linear least-square optimization. Our algorithm preserves the advantages of the original ESM method which has high convergence rate and large capture radius. Experimental results show that our algorithm is more robust to lighting changes and has higher registration accuracy compared to previous algorithms.

  15. A Multiple Object Geometric Deformable Model for Image Segmentation

    PubMed Central

    Bogovic, John A.; Prince, Jerry L.; Bazin, Pierre-Louis

    2012-01-01

    Deformable models are widely used for image segmentation, most commonly to find single objects within an image. Although several methods have been proposed to segment multiple objects using deformable models, substantial limitations in their utility remain. This paper presents a multiple object segmentation method using a novel and efficient object representation for both two and three dimensions. The new framework guarantees object relationships and topology, prevents overlaps and gaps, enables boundary-specific speeds, and has a computationally efficient evolution scheme that is largely independent of the number of objects. Maintaining object relationships and straightforward use of object-specific and boundary-specific smoothing and advection forces enables the segmentation of objects with multiple compartments, a critical capability in the parcellation of organs in medical imaging. Comparing the new framework with previous approaches shows its superior performance and scalability. PMID:23316110

  16. Probing the Double Layer: Effect of Image Forces on AFM

    PubMed Central

    Sachs, Frederick

    2006-01-01

    Force probes such as AFM tips or laser trap latex beads have a dielectric constant much less than that of the water that they displace. Thus when a probe approaches a charged surface under water it will be repelled simply based upon the image forces, and these can be of nN magnitude. PMID:16714346

  17. Improving the geometric fidelity of imaging systems employing sensor arrays

    NASA Technical Reports Server (NTRS)

    Jones, Kenneth L. (Inventor)

    1990-01-01

    A sensor assembly to be carried on an aircraft or spacecraft which will travel along an arbitrary flight path, for providing an image of terrain over which the craft travels, is disclosed. The assembly includes a main linear sensor array and a plurality of auxiliary sensor arrays oriented parallel to, and at respectively different distances from, the main array. By comparing the image signals produced by the main sensor array with those produced by each auxiliary array, information relating to variations in velocity of the craft carrying the assembly can be obtained. The signals from each auxiliary array will provide information relating to a respectively different frequency range.

  18. Geometric ortho-rectification and generation of sigma(0) image products from multiple incidence synthetic aperture radar images

    NASA Technical Reports Server (NTRS)

    Curlander, James; Leberl, Franz; Kruse, Fred

    1992-01-01

    The results of the first phase of a cooperative effort in geometric orthorectification and generation of sigma(0) images of multiple incidence SAR images are presented. The geometric accuracy of the final image products is approximately 18 m or 1.5 pixels. A method for registering radar imagery collected from an airborne platform to an existing digital elevation model despite the effects of unmodeled variations in the flight path of the platform is demonstrated. The results indicate the requirements for a more detailed digital elevation model.

  19. Using Nonprinciple Rays to Form Images in Geometrical Optics

    ERIC Educational Resources Information Center

    Marx, Jeff; Mian, Shabbir

    2015-01-01

    Constructing ray diagrams to locate the image of an object formed by thin lenses and mirrors is a staple of many introductory physics courses at the high school and college levels, and has been the subject of some pedagogy-related articles. Our review of textbooks distributed in the United States suggests that the singular approach involves…

  20. Establishment of Imaging Spectroscopy of Nuclear Gamma-Rays based on Geometrical Optics.

    PubMed

    Tanimori, Toru; Mizumura, Yoshitaka; Takada, Atsushi; Miyamoto, Shohei; Takemura, Taito; Kishimoto, Tetsuro; Komura, Shotaro; Kubo, Hidetoshi; Kurosawa, Shunsuke; Matsuoka, Yoshihiro; Miuchi, Kentaro; Mizumoto, Tetsuya; Nakamasu, Yuma; Nakamura, Kiseki; Parker, Joseph D; Sawano, Tatsuya; Sonoda, Shinya; Tomono, Dai; Yoshikawa, Kei

    2017-02-03

    Since the discovery of nuclear gamma-rays, its imaging has been limited to pseudo imaging, such as Compton Camera (CC) and coded mask. Pseudo imaging does not keep physical information (intensity, or brightness in Optics) along a ray, and thus is capable of no more than qualitative imaging of bright objects. To attain quantitative imaging, cameras that realize geometrical optics is essential, which would be, for nuclear MeV gammas, only possible via complete reconstruction of the Compton process. Recently we have revealed that "Electron Tracking Compton Camera" (ETCC) provides a well-defined Point Spread Function (PSF). The information of an incoming gamma is kept along a ray with the PSF and that is equivalent to geometrical optics. Here we present an imaging-spectroscopic measurement with the ETCC. Our results highlight the intrinsic difficulty with CCs in performing accurate imaging, and show that the ETCC surmounts this problem. The imaging capability also helps the ETCC suppress the noise level dramatically by ~3 orders of magnitude without a shielding structure. Furthermore, full reconstruction of Compton process with the ETCC provides spectra free of Compton edges. These results mark the first proper imaging of nuclear gammas based on the genuine geometrical optics.

  1. Establishment of Imaging Spectroscopy of Nuclear Gamma-Rays based on Geometrical Optics

    NASA Astrophysics Data System (ADS)

    Tanimori, Toru; Mizumura, Yoshitaka; Takada, Atsushi; Miyamoto, Shohei; Takemura, Taito; Kishimoto, Tetsuro; Komura, Shotaro; Kubo, Hidetoshi; Kurosawa, Shunsuke; Matsuoka, Yoshihiro; Miuchi, Kentaro; Mizumoto, Tetsuya; Nakamasu, Yuma; Nakamura, Kiseki; Parker, Joseph D.; Sawano, Tatsuya; Sonoda, Shinya; Tomono, Dai; Yoshikawa, Kei

    2017-02-01

    Since the discovery of nuclear gamma-rays, its imaging has been limited to pseudo imaging, such as Compton Camera (CC) and coded mask. Pseudo imaging does not keep physical information (intensity, or brightness in Optics) along a ray, and thus is capable of no more than qualitative imaging of bright objects. To attain quantitative imaging, cameras that realize geometrical optics is essential, which would be, for nuclear MeV gammas, only possible via complete reconstruction of the Compton process. Recently we have revealed that “Electron Tracking Compton Camera” (ETCC) provides a well-defined Point Spread Function (PSF). The information of an incoming gamma is kept along a ray with the PSF and that is equivalent to geometrical optics. Here we present an imaging-spectroscopic measurement with the ETCC. Our results highlight the intrinsic difficulty with CCs in performing accurate imaging, and show that the ETCC surmounts this problem. The imaging capability also helps the ETCC suppress the noise level dramatically by ~3 orders of magnitude without a shielding structure. Furthermore, full reconstruction of Compton process with the ETCC provides spectra free of Compton edges. These results mark the first proper imaging of nuclear gammas based on the genuine geometrical optics.

  2. Establishment of Imaging Spectroscopy of Nuclear Gamma-Rays based on Geometrical Optics

    PubMed Central

    Tanimori, Toru; Mizumura, Yoshitaka; Takada, Atsushi; Miyamoto, Shohei; Takemura, Taito; Kishimoto, Tetsuro; Komura, Shotaro; Kubo, Hidetoshi; Kurosawa, Shunsuke; Matsuoka, Yoshihiro; Miuchi, Kentaro; Mizumoto, Tetsuya; Nakamasu, Yuma; Nakamura, Kiseki; Parker, Joseph D.; Sawano, Tatsuya; Sonoda, Shinya; Tomono, Dai; Yoshikawa, Kei

    2017-01-01

    Since the discovery of nuclear gamma-rays, its imaging has been limited to pseudo imaging, such as Compton Camera (CC) and coded mask. Pseudo imaging does not keep physical information (intensity, or brightness in Optics) along a ray, and thus is capable of no more than qualitative imaging of bright objects. To attain quantitative imaging, cameras that realize geometrical optics is essential, which would be, for nuclear MeV gammas, only possible via complete reconstruction of the Compton process. Recently we have revealed that “Electron Tracking Compton Camera” (ETCC) provides a well-defined Point Spread Function (PSF). The information of an incoming gamma is kept along a ray with the PSF and that is equivalent to geometrical optics. Here we present an imaging-spectroscopic measurement with the ETCC. Our results highlight the intrinsic difficulty with CCs in performing accurate imaging, and show that the ETCC surmounts this problem. The imaging capability also helps the ETCC suppress the noise level dramatically by ~3 orders of magnitude without a shielding structure. Furthermore, full reconstruction of Compton process with the ETCC provides spectra free of Compton edges. These results mark the first proper imaging of nuclear gammas based on the genuine geometrical optics. PMID:28155870

  3. Probe and object function reconstruction in incoherent stem imaging

    SciTech Connect

    Nellist, P.D.; Pennycook, S.J.

    1996-09-01

    Using the phase-object approximation it is shown how an annular dark- field (ADF) detector in a scanning transmission electron microscope (STEM) leads to an image which can be described by an incoherent model. The point spread function is found to be simply the illuminating probe intensity. An important consequence of this is that there is no phase problem in the imaging process, which allows various image processing methods to be applied directly to the image intensity data. Using an image of a GaAs<110>, the probe intensity profile is reconstructed, confirming the existence of a 1.3 {Angstrom} probe in a 300kV STEM. It is shown that simply deconvolving this reconstructed probe from the image data does not improve its interpretability because the dominant effects of the imaging process arise simply from the restricted resolution of the microscope. However, use of the reconstructed probe in a maximum entropy reconstruction is demonstrated, which allows information beyond the resolution limit to be restored and does allow improved image interpretation.

  4. Second-harmonic radiating imaging probes and harmonic holography

    NASA Astrophysics Data System (ADS)

    Pu, Ye; Psaltis, Demetri

    2016-10-01

    Compared with other imaging probes such as fluorescent dyes and quantum dots, second-harmonic radiating imaging probes (SHRIMPs) provide a unique ultrafast, coherent optical contrast that is free of photobleaching and emission intermittency. Using the second-harmonic signal emitted from SHRIMPs, harmonic holography achieves threedimensional holographic imaging with a color contrast similar to fluorescence microscopy where the uninterested background scattering is efficiently suppressed by an optical filter. The coherent contrast provided by SHRIMPs also enables imaging through turbid media via digital phase conjugation. Here we review the developments and applications of SHRIMPs and harmonic holography.

  5. Characterization, prediction, and correction of geometric distortion in 3 T MR images

    SciTech Connect

    Baldwin, Lesley N.; Wachowicz, Keith; Thomas, Steven D.; Rivest, Ryan; Gino Fallone, B.

    2007-02-15

    The work presented herein describes our methods and results for predicting, measuring and correcting geometric distortions in a 3 T clinical magnetic resonance (MR) scanner for the purpose of image guidance in radiation treatment planning. Geometric inaccuracies due to both inhomogeneities in the background field and nonlinearities in the applied gradients were easily visualized on the MR images of a regularly structured three-dimensional (3D) grid phantom. From a computed tomography scan, the locations of just under 10 000 control points within the phantom were accurately determined in three dimensions using a MATLAB-based computer program. MR distortion was then determined by measuring the corresponding locations of the control points when the phantom was imaged using the MR scanner. Using a reversed gradient method, distortions due to gradient nonlinearities were separated from distortions due to inhomogeneities in the background B{sub 0} field. Because the various sources of machine-related distortions can be individually characterized, distortions present in other imaging sequences (for which 3D distortion cannot accurately be measured using phantom methods) can be predicted negating the need for individual distortion calculation for a variety of other imaging sequences. Distortions were found to be primarily caused by gradient nonlinearities and maximum image distortions were reported to be less than those previously found by other researchers at 1.5 T. Finally, the image slices were corrected for distortion in order to provide geometrically accurate phantom images.

  6. Near-infrared Molecular Probes for In Vivo Imaging

    PubMed Central

    Zhang, Xuan; Bloch, Sharon; Akers, Walter; Achilefu, Samuel

    2012-01-01

    Cellular and tissue imaging in the near-infrared (NIR) wavelengths between 700 and 900 nm is advantageous for in vivo because of the low absorption of biological molecules in this region. This Unit presents protocols for small animal imaging using planar and fluorescence lifetime imaging techniques. Included is an overview of NIR fluorescence imaging of cells and small animals using NIR organic fluorophores, nanoparticles, and multimodal imaging probes. The development, advantages, and application of NIR fluorescent probes that have been used for in vivo imaging are also summarized. The use of NIR agents in conjunction with visible dyes and considerations in selecting imaging agents are discussed. We conclude with practical considerations for the use of these dyes in cell and small animal imaging applications. PMID:22470154

  7. Spatial-scanning hyperspectral imaging probe for bio-imaging applications.

    PubMed

    Lim, Hoong-Ta; Murukeshan, Vadakke Matham

    2016-03-01

    The three common methods to perform hyperspectral imaging are the spatial-scanning, spectral-scanning, and snapshot methods. However, only the spectral-scanning and snapshot methods have been configured to a hyperspectral imaging probe as of today. This paper presents a spatial-scanning (pushbroom) hyperspectral imaging probe, which is realized by integrating a pushbroom hyperspectral imager with an imaging probe. The proposed hyperspectral imaging probe can also function as an endoscopic probe by integrating a custom fabricated image fiber bundle unit. The imaging probe is configured by incorporating a gradient-index lens at the end face of an image fiber bundle that consists of about 50,000 individual fiberlets. The necessary simulations, methodology, and detailed instrumentation aspects that are carried out are explained followed by assessing the developed probe's performance. Resolution test targets such as United States Air Force chart as well as bio-samples such as chicken breast tissue with blood clot are used as test samples for resolution analysis and for performance validation. This system is built on a pushbroom hyperspectral imaging system with a video camera and has the advantage of acquiring information from a large number of spectral bands with selectable region of interest. The advantages of this spatial-scanning hyperspectral imaging probe can be extended to test samples or tissues residing in regions that are difficult to access with potential diagnostic bio-imaging applications.

  8. Spatial-scanning hyperspectral imaging probe for bio-imaging applications

    NASA Astrophysics Data System (ADS)

    Lim, Hoong-Ta; Murukeshan, Vadakke Matham

    2016-03-01

    The three common methods to perform hyperspectral imaging are the spatial-scanning, spectral-scanning, and snapshot methods. However, only the spectral-scanning and snapshot methods have been configured to a hyperspectral imaging probe as of today. This paper presents a spatial-scanning (pushbroom) hyperspectral imaging probe, which is realized by integrating a pushbroom hyperspectral imager with an imaging probe. The proposed hyperspectral imaging probe can also function as an endoscopic probe by integrating a custom fabricated image fiber bundle unit. The imaging probe is configured by incorporating a gradient-index lens at the end face of an image fiber bundle that consists of about 50 000 individual fiberlets. The necessary simulations, methodology, and detailed instrumentation aspects that are carried out are explained followed by assessing the developed probe's performance. Resolution test targets such as United States Air Force chart as well as bio-samples such as chicken breast tissue with blood clot are used as test samples for resolution analysis and for performance validation. This system is built on a pushbroom hyperspectral imaging system with a video camera and has the advantage of acquiring information from a large number of spectral bands with selectable region of interest. The advantages of this spatial-scanning hyperspectral imaging probe can be extended to test samples or tissues residing in regions that are difficult to access with potential diagnostic bio-imaging applications.

  9. Development of a QA phantom and automated analysis tool for geometric quality assurance of on-board MV and kV x-ray imaging systems.

    PubMed

    Mao, Weihua; Lee, Louis; Xing, Lei

    2008-04-01

    The medical linear accelerator (linac) integrated with a kilovoltage (kV) flat-panel imager has been emerging as an important piece of equipment for image-guided radiation therapy. Due to the sagging of the linac head and the flexing of the robotic arms that mount the x-ray tube and flat-panel detector, geometric nonidealities generally exist in the imaging geometry no matter whether it is for the two-dimensional projection image or three-dimensional cone-beam computed tomography. Normally, the geometric parameters are established during the commissioning and incorporated in correction software in respective image formation or reconstruction. A prudent use of an on-board imaging system necessitates a routine surveillance of the geometric accuracy of the system like the position of the x-ray source, imager position and orientation, isocenter, rotation trajectory, and source-to-imager distance. Here we describe a purposely built phantom and a data analysis software for monitoring these important parameters of the system in an efficient and automated way. The developed tool works equally well for the megavoltage (MV) electronic portal imaging device and hence allows us to measure the coincidence of the isocenters of the MV and kV beams of the linac. This QA tool can detect an angular uncertainty of 0.1 degrees of the x-ray source. For spatial uncertainties, such as the source position, the imager position, or the kV/MV isocenter misalignment, the demonstrated accuracy of this tool was better than 1.6 mm. The developed tool provides us with a simple, robust, and objective way to probe and monitor the geometric status of an imaging system in a fully automatic process and facilitate routine QA workflow in a clinic.

  10. A geometric performance assessment of the EO-1 advanced land imager

    USGS Publications Warehouse

    Storey, J.C.; Choate, M.J.; Meyer, D.J.

    2004-01-01

    The Earth Observing 1 (EO-1) Advanced Land Imager (ALI) demonstrates technology applicable to a successor system to the Landsat Thematic Mapper series. A study of the geometric performance characteristics of the ALI was conducted under the auspices of the EO-1 Science Validation Team. This study evaluated ALI performance with respect to absolute pointing knowledge, focal plane sensor chip assembly alignment, and band-to-band registration for purposes of comparing this new technology to the heritage Landsat systems. On-orbit geometric calibration procedures were developed that allowed the generation of ALI geometrically corrected products that compare favorably with their Landsat 7 counterparts with respect to absolute geodetic accuracy, internal image geometry, and band registration.

  11. Analysis and quantification of errors in the geometric correction of satellite images

    NASA Technical Reports Server (NTRS)

    Ford, G. E.; Zanelli, C. I.

    1985-01-01

    The quantitative use of remote sensing satellite images in many applications requires that the geometric distortion inherent in these images be corrected, or rectified, to a desired map projection. The most widely used technique relies on ground control points to empirically determine a mathematical coordinate transformation to correct the geometry. In this paper, using the method of least squares, expressions for the accuracy of the geometric transformation and of the rectification of the satellite image to a map projection are derived. Explicit relations between the global accuracy of the transformation and the number, location, and local accuracy of the ground control points are obtained. The results are applied to the correction of a Landsat MSS image.

  12. Spline function approximation techniques for image geometric distortion representation. [for registration of multitemporal remote sensor imagery

    NASA Technical Reports Server (NTRS)

    Anuta, P. E.

    1975-01-01

    Least squares approximation techniques were developed for use in computer aided correction of spatial image distortions for registration of multitemporal remote sensor imagery. Polynomials were first used to define image distortion over the entire two dimensional image space. Spline functions were then investigated to determine if the combination of lower order polynomials could approximate a higher order distortion with less computational difficulty. Algorithms for generating approximating functions were developed and applied to the description of image distortion in aircraft multispectral scanner imagery. Other applications of the techniques were suggested for earth resources data processing areas other than geometric distortion representation.

  13. The Reduction Of Motion Artifacts In Digital Subtraction Angiography By Geometrical Image Transformation

    NASA Astrophysics Data System (ADS)

    Fitzpatrick, J. Michael; Pickens, David R.; Mandava, Venkateswara R.; Grefenstette, John J.

    1988-06-01

    In the diagnosis of arteriosclerosis, radio-opaque dye is injected into the interior of the arteries to make them visible. Because of its increased contrast sensitivity, digital subtraction angiography has the potential for providing diagnostic images of arteries with reduced dye volumes. In the conventional technique, a mask image, acquired before the introduction of the dye, is subtracted from the contrast image, acquired after the dye is introduced, to produce a difference image in which only the dye in the arteries is visible. The usefulness of this technique has been severely limited by the image degradation caused by patient motion during image acquisition. This motion produces artifacts in the difference image that obscure the arteries. One technique for dealing with this problem is to reduce the degradation by means of image registration. The registration is carried out by means of a geometrical transformation of the mask image before subtraction so that it is in registration with the contrast image. This paper describes our technique for determining an optimal transformation. We employ a one-to-one elastic mapping and the Jacobian of that mapping to produce a geometrical image transformation. We choose a parameterized class of such mappings and use a heuristic search algorithm to optimize the parameters to minimize the severity of the motion artifacts. To increase the speed of the optimization process we use a statistical image comparison technique that provides a quick approximate evaluation of each image transformation. We present the experimental results of the application of our registration system to mask-contrast pairs, for images acquired from a specially designed phantom (described in a companion paper), and for clinical images.

  14. Small Molecule Probes for Plant Cell Wall Polysaccharide Imaging

    PubMed Central

    Wallace, Ian S.; Anderson, Charles T.

    2012-01-01

    Plant cell walls are composed of interlinked polymer networks consisting of cellulose, hemicelluloses, pectins, proteins, and lignin. The ordered deposition of these components is a dynamic process that critically affects the development and differentiation of plant cells. However, our understanding of cell wall synthesis and remodeling, as well as the diverse cell wall architectures that result from these processes, has been limited by a lack of suitable chemical probes that are compatible with live-cell imaging. In this review, we summarize the currently available molecular toolbox of probes for cell wall polysaccharide imaging in plants, with particular emphasis on recent advances in small molecule-based fluorescent probes. We also discuss the potential for further development of small molecule probes for the analysis of cell wall architecture and dynamics. PMID:22639673

  15. Intracellular probes for imaging oxygen concentration: how good are they?

    NASA Astrophysics Data System (ADS)

    Dmitriev, Ruslan I.; Papkovsky, Dmitri B.

    2015-09-01

    In the last decade a number of cell-permeable phosphorescence based probes for imaging of (intra)cellular oxygen (icO2) have been described. These small molecule, supramolecular and nanoparticle structures, although allowing analysis of hypoxia, local gradients and fluctuations in O2, responses to stimulation and drug treatment at sub-cellular level with high spatial and temporal resolution, differ significantly in their operational performance and applicability to different cell and tissue models. Here we discuss and compare these probes with respect to their staining efficiency, brightness, photostability, toxicity, cell specificity, compatibility with different cell and tissue models, and analytical performance. Merits and limitations of particular probes are highlighted and strategies for development of new high-performance O2 imaging probes defined. Key application areas in hypoxia research, stem cells, cancer biology and tissue physiology are also discussed.

  16. Fluorescent cyanine probe for DNA detection and cellular imaging

    NASA Astrophysics Data System (ADS)

    Zheng, Yong-Chao; Zheng, Mei-Ling; Zhao, Zhen-Sheng; Duan, Xuan-Ming

    2014-03-01

    In our study, two carbazole-based cyanines, 3,6-bis[2-(1-methylpyridinium)vinyl]-9-methyl carbazole diiodide (A) and 6,6'-bis[2-(1-methylpyridinium)vinyl]-bis(9-methyl-carbazol-3yl)methane diiodide (B) were synthesized and employed as light-up probes for DNA and cell imaging. Both of the cyanine probes possess a symmetric structure and bis-cationic center. The obvious induced circular dichroism signals in circular dichroism spectra reveal that the molecules can specifically interact with DNA. Strong fluorescence enhancement is observed when these two cyanines are bound to DNA. These cyanine probes show high binding affinity to oligonucleotides but different binding preferences to various secondary structures. Confocal microscopy images of fixed cell stained by the probes exhibit strong brightness and high contrast in nucleus with a very low cytoplasmic background.

  17. [Geometric distortion correction for hyperspectral image using a rotating scan reflector].

    PubMed

    Ke, Gang-yang; An, Ning; Tian, Yang-chao; Ma, Zhi-hong; Huang, Wen-jiang; Wang, Qiu-ping

    2012-08-01

    Offner imaging spectrometer is a kind of pushbroom imaging system. Hyperspectral images acquired by Offner imaging spectrometers require relative motion of sensor and scene that is translation or rotation. Via rotating scan with a reflector at the front of sensor's len, large objects can be entirely captured. But for the changes in object distances, geometric distortion occurs. A formula of space projection from an object point to an image point by one capture was derived. According to the projection relation and slit's motion curve, the object points' coordinates on a reference plan were obtained with rotation angle for a variable. A rotating scan device using a reflector was designed and installed on an Offner imaging spectrometer. Clear images were achieved from the processing of correction algorithm.

  18. Probing bacterial cell biology using image cytometry.

    PubMed

    Cass, Julie A; Stylianidou, Stella; Kuwada, Nathan J; Traxler, Beth; Wiggins, Paul A

    2017-03-01

    Advances in automated fluorescence microscopy have made snapshot and time-lapse imaging of bacterial cells commonplace, yet fundamental challenges remain in analysis. The vast quantity of data collected in high-throughput experiments requires a fast and reliable automated method to analyze fluorescence intensity and localization, cell morphology and proliferation as well as other descriptors. Inspired by effective yet tractable methods of population-level analysis using flow cytometry, we have developed a framework and tools for facilitating analogous analyses in image cytometry. These tools can both visualize and gate (generate subpopulations) more than 70 cell descriptors, including cell size, age and fluorescence. The method is well suited to multi-well imaging, analysis of bacterial cultures with high cell density (thousands of cells per frame) and complete cell cycle imaging. We give a brief description of the analysis of four distinct applications to emphasize the broad applicability of the tool.

  19. Matching Aerial Images to 3d Building Models Based on Context-Based Geometric Hashing

    NASA Astrophysics Data System (ADS)

    Jung, J.; Bang, K.; Sohn, G.; Armenakis, C.

    2016-06-01

    In this paper, a new model-to-image framework to automatically align a single airborne image with existing 3D building models using geometric hashing is proposed. As a prerequisite process for various applications such as data fusion, object tracking, change detection and texture mapping, the proposed registration method is used for determining accurate exterior orientation parameters (EOPs) of a single image. This model-to-image matching process consists of three steps: 1) feature extraction, 2) similarity measure and matching, and 3) adjustment of EOPs of a single image. For feature extraction, we proposed two types of matching cues, edged corner points representing the saliency of building corner points with associated edges and contextual relations among the edged corner points within an individual roof. These matching features are extracted from both 3D building and a single airborne image. A set of matched corners are found with given proximity measure through geometric hashing and optimal matches are then finally determined by maximizing the matching cost encoding contextual similarity between matching candidates. Final matched corners are used for adjusting EOPs of the single airborne image by the least square method based on co-linearity equations. The result shows that acceptable accuracy of single image's EOP can be achievable by the proposed registration approach as an alternative to labour-intensive manual registration process.

  20. Investigation of image corner features matching algorithm based on heuristic local geometric constrained strategy

    NASA Astrophysics Data System (ADS)

    An, Ru; Wang, Huilin; Fen, Xuezhi; Xu, Daxin; Ruan, Renzong

    2005-11-01

    The main aim of the study is to improve the performance of image matching algorithm of Scene Matching Aided Navigation System. In the paper, corner-based image matching algorithm with automatic search of homonymous corner pairs is discussed. Gaussian Low-pass Filter with different kernels according to the spatial resolution of reference image and real-time image are applied to the image in preprocessing stage to remove noise, to get over spatial resolution difference between reference image and real-time image and to enhance the repeatability of corner detection. A novel fast corner detector, which is based on SUSAN and the geometric structure analysis, is designed to extract corner features. Normalized co-correlation algorithm is applied in search of homonymous corner pairs through a small window centering corners. A heuristic local geometrically constrained strategy is employed to remove mis-matched corner pairs in initial matching stage. In the end, matched corners, in combination with a suitable polynomial algorithm, are used to match and rectify images.

  1. Effect of probe diffusion on the SOFI imaging accuracy

    PubMed Central

    Vandenberg, Wim; Dedecker, Peter

    2017-01-01

    Live-cell super-resolution fluorescence imaging is becoming commonplace for exploring biological systems, though sample dynamics can affect the imaging quality. In this work we evaluate the effect of probe diffusion on super-resolution optical fluctuation imaging (SOFI), using a theoretical model and numerical simulations based on the imaging of live cells labelled with photochromic fluorescent proteins. We find that, over a range of physiological conditions, fluorophore diffusion results in a change in the amplitude of the SOFI signal. The magnitude of this change is approximately proportional to the on-time ratio of the fluorophores. However, for photochromic fluorescent proteins this effect is unlikely to present a significant distortion in practical experiments in biological systems. Due to this lack of distortions, probe diffusion strongly enhances the SOFI imaging by avoiding spatial undersampling caused by the limited labeling density. PMID:28333166

  2. Dendrimer Probes for Enhanced Photostability and Localization in Fluorescence Imaging

    PubMed Central

    Kim, Younghoon; Kim, Sung Hoon; Tanyeri, Melikhan; Katzenellenbogen, John A.; Schroeder, Charles M.

    2013-01-01

    Recent advances in fluorescence microscopy have enabled high-resolution imaging and tracking of single proteins and biomolecules in cells. To achieve high spatial resolutions in the nanometer range, bright and photostable fluorescent probes are critically required. From this view, there is a strong need for development of advanced fluorescent probes with molecular-scale dimensions for fluorescence imaging. Polymer-based dendrimer nanoconjugates hold strong potential to serve as versatile fluorescent probes due to an intrinsic capacity for tailored spectral properties such as brightness and emission wavelength. In this work, we report a new, to our knowledge, class of molecular probes based on dye-conjugated dendrimers for fluorescence imaging and single-molecule fluorescence microscopy. We engineered fluorescent dendritic nanoprobes (FDNs) to contain multiple organic dyes and reactive groups for target-specific biomolecule labeling. The photophysical properties of dye-conjugated FDNs (Cy5-FDNs and Cy3-FDNs) were characterized using single-molecule fluorescence microscopy, which revealed greatly enhanced photostability, increased probe brightness, and improved localization precision in high-resolution fluorescence imaging compared to single organic dyes. As proof-of-principle demonstration, Cy5-FDNs were used to assay single-molecule nucleic acid hybridization and for immunofluorescence imaging of microtubules in cytoskeletal networks. In addition, Cy5-FDNs were used as reporter probes in a single-molecule protein pull-down assay to characterize antibody binding and target protein capture. In all cases, the photophysical properties of FDNs resulted in enhanced fluorescence imaging via improved brightness and/or photostability. PMID:23561533

  3. Correcting incompatible DN values and geometric errors in nighttime lights time series images

    SciTech Connect

    Zhao, Naizhuo; Zhou, Yuyu; Samson, Eric L.

    2014-09-19

    The Defense Meteorological Satellite Program’s Operational Linescan System (DMSP-OLS) nighttime lights imagery has proven to be a powerful remote sensing tool to monitor urbanization and assess socioeconomic activities at large scales. However, the existence of incompatible digital number (DN) values and geometric errors severely limit application of nighttime light image data on multi-year quantitative research. In this study we extend and improve previous studies on inter-calibrating nighttime lights image data to obtain more compatible and reliable nighttime lights time series (NLT) image data for China and the United States (US) through four steps: inter-calibration, geometric correction, steady increase adjustment, and population data correction. We then use gross domestic product (GDP) data to test the processed NLT image data indirectly and find that sum light (summed DN value of pixels in a nighttime light image) maintains apparent increase trends with relatively large GDP growth rates but does not increase or decrease with relatively small GDP growth rates. As nighttime light is a sensitive indicator for economic activity, the temporally consistent trends between sum light and GDP growth rate imply that brightness of nighttime lights on the ground is correctly represented by the processed NLT image data. Finally, through analyzing the corrected NLT image data from 1992 to 2008, we find that China experienced apparent nighttime lights development in 1992-1997 and 2001-2008 respectively and the US suffered from nighttime lights decay in large areas after 2001.

  4. Sentinel-2A image quality commissioning phase final results: geometric calibration and performances

    NASA Astrophysics Data System (ADS)

    Languille, F.; Gaudel, A.; Dechoz, C.; Greslou, D.; de Lussy, F.; Trémas, T.; Poulain, V.; Massera, S.

    2016-10-01

    In the frame of the Copernicus program of the European Commission, Sentinel-2 offers multispectral high-spatial-resolution optical images over global terrestrial surfaces. In cooperation with ESA, the Centre National d'Etudes Spatiales (CNES) is in charge of the image quality of the project, and so ensures the CAL/VAL commissioning phase during the months following the launch. Sentinel-2 is a constellation of 2 satellites on a polar sun-synchronous orbit with a revisit time of 5 days (with both satellites), a high field of view - 290km, 13 spectral bands in visible and shortwave infrared, and high spatial resolution - 10m, 20m and 60m. The Sentinel-2 mission offers a global coverage over terrestrial surfaces. The satellites acquire systematically terrestrial surfaces under the same viewing conditions in order to have temporal images stacks. The first satellite was launched in June 2015. Following the launch, the CAL/VAL commissioning phase is then lasting during 6 months for geometrical calibration. This paper will point on observations and results seen on Sentinel-2 images during commissioning phase. It will provide explanations about Sentinel-2 products delivered with geometric corrections. This paper will detail calibration sites, and the methods used for geometrical parameters calibration and will present linked results. The following topics will be presented: viewing frames orientation assessment, focal plane mapping for all spectral bands, results on geolocation assessment, and multispectral registration. There is a systematic images recalibration over a same reference which is a set of S2 images produced during the 6 months of CAL/VAL. This set of images will be presented as well as the geolocation performance and the multitemporal performance after refining over this ground reference.

  5. Magnetically engineered semiconductor quantum dots as multimodal imaging probes.

    PubMed

    Jing, Lihong; Ding, Ke; Kershaw, Stephen V; Kempson, Ivan M; Rogach, Andrey L; Gao, Mingyuan

    2014-10-08

    Light-emitting semiconductor quantum dots (QDs) combined with magnetic resonance imaging contrast agents within a single nanoparticle platform are considered to perform as multimodal imaging probes in biomedical research and related clinical applications. The principles of their rational design are outlined and contemporary synthetic strategies are reviewed (heterocrystalline growth; co-encapsulation or assembly of preformed QDs and magnetic nanoparticles; conjugation of magnetic chelates onto QDs; and doping of QDs with transition metal ions), identifying the strengths and weaknesses of different approaches. Some of the opportunities and benefits that arise through in vivo imaging using these dual-mode probes are highlighted where tumor location and delineation is demonstrated in both MRI and fluorescence modality. Work on the toxicological assessments of QD/magnetic nanoparticles is also reviewed, along with progress in reducing their toxicological side effects for eventual clinical use. The review concludes with an outlook for future biomedical imaging and the identification of key challenges in reaching clinical applications.

  6. Imaging with second-harmonic radiation probes in living tissue

    PubMed Central

    Grange, Rachel; Lanvin, Thomas; Hsieh, Chia-Lung; Pu, Ye; Psaltis, Demetri

    2011-01-01

    We demonstrate that second-harmonic radiation imaging probes are efficient biomarkers for imaging in living tissue. We show that 100 nm and 300 nm BaTiO3 nanoparticles used as contrast markers could be detected through 50 μm and 120 μm of mouse tail tissue in vitro or in vivo. Experimental results and Monte-Carlo simulations are in good agreement. PMID:21991545

  7. The Wide-Field Imager for Solar Probe Plus (WISPR)

    NASA Astrophysics Data System (ADS)

    Vourlidas, Angelos; Howard, Russell A.; Plunkett, Simon P.; Korendyke, Clarence M.; Thernisien, Arnaud F. R.; Wang, Dennis; Rich, Nathan; Carter, Michael T.; Chua, Damien H.; Socker, Dennis G.; Linton, Mark G.; Morrill, Jeff S.; Lynch, Sean; Thurn, Adam; Van Duyne, Peter; Hagood, Robert; Clifford, Greg; Grey, Phares J.; Velli, Marco; Liewer, Paulett C.; Hall, Jeffrey R.; DeJong, Eric M.; Mikic, Zoran; Rochus, Pierre; Mazy, Emanuel; Bothmer, Volker; Rodmann, Jens

    2016-12-01

    The Wide-field Imager for Solar PRobe Plus (WISPR) is the sole imager aboard the Solar Probe Plus (SPP) mission scheduled for launch in 2018. SPP will be a unique mission designed to orbit as close as 7 million km (9.86 solar radii) from Sun center. WISPR employs a 95∘ radial by 58∘ transverse field of view to image the fine-scale structure of the solar corona, derive the 3D structure of the large-scale corona, and determine whether a dust-free zone exists near the Sun. WISPR is the smallest heliospheric imager to date yet it comprises two nested wide-field telescopes with large-format (2 K × 2 K) APS CMOS detectors to optimize the performance for their respective fields of view and to minimize the risk of dust damage, which may be considerable close to the Sun. The WISPR electronics are very flexible allowing the collection of individual images at cadences up to 1 second at perihelion or the summing of multiple images to increase the signal-to-noise when the spacecraft is further from the Sun. The dependency of the Thomson scattering emission of the corona on the imaging geometry dictates that WISPR will be very sensitive to the emission from plasma close to the spacecraft in contrast to the situation for imaging from Earth orbit. WISPR will be the first `local' imager providing a crucial link between the large-scale corona and the in-situ measurements.

  8. Emerging Roles of the Endolumenal Functional Lumen Imaging Probe in Gastrointestinal Motility Disorders

    PubMed Central

    Ata-Lawenko, Rona M; Lee, Yeong Yeh

    2017-01-01

    Gastrointestinal sphincters play a vital role in gut function and motility by separating the gut into functional segments. Traditionally, function of sphincters including the esophagogastric junction is studied using endoscopy and manometry. However, due to its dynamic biomechanical properties, data on distensibility and compliance may provide a more accurate representation of the sphincter function. The endolumenal functional lumen imaging probe (EndoFLIP) system uses a multi-detector impedance planimetry system to provide data on tissue distensibility and geometric changes in the sphincter as measured through resistance to volumetric distention with real-time images. With the advent of EndoFLIP studies, esophagogastric junction dysfunction and other disorders of the stomach and bowels may be better evaluated. It may be utilized as a tool in predicting effectiveness of endoscopic and surgical treatments as well as patient outcomes. PMID:28013295

  9. Reconstruction of a geometrically correct diffusion tensor image of a moving human fetal brain

    NASA Astrophysics Data System (ADS)

    Kim, Kio; Habas, Piotr A.; Rousseau, Francois; Glenn, Orit A.; Barkovich, A. J.; Koob, Meriam; Dietemann, Jean-Louis; Robinson, Ashley J.; Poskitt, Kenneth J.; Miller, Steven P.; Studholme, Colin

    2010-03-01

    Recent studies reported the development of methods for rigid registration of 2D fetal brain imaging data to correct for unconstrained fetal and maternal motion, and allow the formation of a true 3D image of conventional fetal brain anatomy from conventional MRI. Diffusion tensor imaging provides additional valuable insight into the developing brain anatomy, however the correction of motion artifacts in clinical fetal diffusion imaging is still a challenging problem. This is due to the challenging problem of matching lower signal-to-noise ratio diffusion weighted EPI slice data to recover between-slice motion, compounded by the presence of possible geometric distortions in the EPI data. In addition, the problem of estimating a diffusion model (such as a tensor) on a regular grid that takes into account the inconsistent spatial and orientation sampling of the diffusion measurements needs to be solved in a robust way. Previous methods have used slice to volume registration within the diffusion dataset. In this work, we describe an alternative approach that makes use of an alignment of diffusion weighted EPI slices to a conventional structural MRI scan which provides a geometrically correct reference image. After spatial realignment of each diffusion slice, a tensor field representing the diffusion profile is estimated by weighted least squared fitting. By qualitative and quantitative evaluation of the results, we confirm the proposed algorithm successfully corrects the motion and reconstructs the diffusion tensor field.

  10. Are image quality metrics adequate to evaluate the quality of geometric objects?

    NASA Astrophysics Data System (ADS)

    Rogowitz, Bernice E.; Rushmeier, Holly E.

    2001-06-01

    Geometric objects are often represented by many millions of triangles or polygons, which limits the ease with which they can be transmitted and displayed electronically. This has lead to the development of many algorithms for simplifying geometric models, and to the recognition that metrics are required to evaluate their success. The goal is to create computer graphic renderings of the object that do not appear to be degraded to a human observer. The perceptual evaluation of simplified objects is a new topic. One approach has been to sue image-based metrics to predict the perceived degradation of simplified 3D models. Since that 2D images of 3D objects can have significantly different perceived quality, depending on the direction of the illumination, 2D measures of image quality may not adequately capture the perceived quality of 3D objects. To address this question, we conducted experiments in which we explicitly compared the perceived quality of animated 3D objects and their corresponding 2D still image projections. Our results suggest that 2D judgements do not provide a good predictor of 3D image quality, and identify a need to develop 'object quality metrics.'

  11. Unified optical distortion correction method for imaging systems using a concise geometrical transformation model

    NASA Astrophysics Data System (ADS)

    Chang, Shengqian; Liu, Siqi; Yuan, Fei; Zheng, Zhenrong

    2017-01-01

    Since optical distortion has been a big trouble for various kinds of imaging systems, finding a simple correction method with wide applications is of significant importance. In this paper, we propose a unified and simple correction method, performing well for both photographic and projective imaging systems. The basic idea is regarding the optical distortion as geometrical deformation between the object and image, without considering the specific features of an optical system. First of all, a calibration template is employed to establish the geometrical transformation model (GTM) for the distortion of a built optical system. Two alternative algorithms are given to estimate the GTM in algebraic form. The computation is very simple because no intrinsic parameters of the optical system are needed to establish the GTM. Besides, the errors introduced by the fabricating and assembling process can be eliminated. Then, the corrected image of the photographic system or the pre-distorted image of the projective systems can be obtained accordingly utilizing the GTM. Experiments are conducted to demonstrate the effectiveness of our method with wide applications.

  12. Probe reconstruction for holographic X-ray imaging

    PubMed Central

    Hagemann, Johannes; Robisch, Anna-Lena; Osterhoff, Markus; Salditt, Tim

    2017-01-01

    In X-ray holographic near-field imaging the resolution and image quality depend sensitively on the beam. Artifacts are often encountered due to the strong focusing required to reach high resolution. Here, two schemes for reconstructing the complex-valued and extended wavefront of X-ray nano-probes, primarily in the planes relevant for imaging (i.e. focus, sample and detection plane), are presented and compared. Firstly, near-field ptychography is used, based on scanning a test pattern laterally as well as longitudinally along the optical axis. Secondly, any test pattern is dispensed of and the wavefront reconstructed only from data recorded for different longitudinal translations of the detector. For this purpose, an optimized multi-plane projection algorithm is presented, which can cope with the numerically very challenging setting of a divergent wavefront emanating from a hard X-ray nanoprobe. The results of both schemes are in very good agreement. The probe retrieval can be used as a tool for optics alignment, in particular at X-ray nanoprobe beamlines. Combining probe retrieval and object reconstruction is also shown to improve the image quality of holographic near-field imaging. PMID:28244446

  13. RADIANCE AND PHOTON NOISE: Imaging in geometrical optics, physical optics, quantum optics and radiology.

    PubMed

    Barrett, Harrison H; Myers, Kyle J; Caucci, Luca

    2014-08-17

    A fundamental way of describing a photon-limited imaging system is in terms of a Poisson random process in spatial, angular and wavelength variables. The mean of this random process is the spectral radiance. The principle of conservation of radiance then allows a full characterization of the noise in the image (conditional on viewing a specified object). To elucidate these connections, we first review the definitions and basic properties of radiance as defined in terms of geometrical optics, radiology, physical optics and quantum optics. The propagation and conservation laws for radiance in each of these domains are reviewed. Then we distinguish four categories of imaging detectors that all respond in some way to the incident radiance, including the new category of photon-processing detectors. The relation between the radiance and the statistical properties of the detector output is discussed and related to task-based measures of image quality and the information content of a single detected photon.

  14. The use of geometric prior information in Bayesian tomographic image reconstruction: A preliminary report

    SciTech Connect

    Lacer, J.; ter Haar Romeny, B.M.; Viergever, M.A.

    1992-06-01

    In this paper we examine the possibility of using pure geometrical information from a prior image to assist in the reconstruction of tomographic data sets with lower number of counts. The situation can arise in dynamic studies, for example, in which the sum image from a number of time frames is available, defining desired regions-of-interest (ROI`s) with good accuracy, and the time evolution of uptake in those ROI`s needs to be obtained from the low count individual data sets. `the prior information must be purely geometrical in such a case, so that the activity in the ROI`s of the prior does not influence the estimated uptake from the individual time frames. It is also desired that the prior does not impose any other conditions on the reconstructions, i.e., no smoothness or deviation from a known set of values is desired. We attack this problem in the framework of Vision Response Functions (VRFs), based on the work done by J.J. Koenderink in Utrecht. We show that there are assemblies of VRF`s that can be presented in a form that is invariant with respect to rotations and translations and that some functions of those invariants can convey the desired geometric prior information independent of the level of activity in the ROI`S, except at very low levels.

  15. The use of geometric prior information in Bayesian tomographic image reconstruction: A preliminary report

    SciTech Connect

    Lacer, J. ); ter Haar Romeny, B.M.; Viergever, M.A. )

    1992-06-01

    In this paper we examine the possibility of using pure geometrical information from a prior image to assist in the reconstruction of tomographic data sets with lower number of counts. The situation can arise in dynamic studies, for example, in which the sum image from a number of time frames is available, defining desired regions-of-interest (ROI's) with good accuracy, and the time evolution of uptake in those ROI's needs to be obtained from the low count individual data sets. 'the prior information must be purely geometrical in such a case, so that the activity in the ROI's of the prior does not influence the estimated uptake from the individual time frames. It is also desired that the prior does not impose any other conditions on the reconstructions, i.e., no smoothness or deviation from a known set of values is desired. We attack this problem in the framework of Vision Response Functions (VRFs), based on the work done by J.J. Koenderink in Utrecht. We show that there are assemblies of VRF's that can be presented in a form that is invariant with respect to rotations and translations and that some functions of those invariants can convey the desired geometric prior information independent of the level of activity in the ROI'S, except at very low levels.

  16. Using image processing techniques on proximity probe signals in rotordynamics

    NASA Astrophysics Data System (ADS)

    Diamond, Dawie; Heyns, Stephan; Oberholster, Abrie

    2016-06-01

    This paper proposes a new approach to process proximity probe signals in rotordynamic applications. It is argued that the signal be interpreted as a one dimensional image. Existing image processing techniques can then be used to gain information about the object being measured. Some results from one application is presented. Rotor blade tip deflections can be calculated through localizing phase information in this one dimensional image. It is experimentally shown that the newly proposed method performs more accurately than standard techniques, especially where the sampling rate of the data acquisition system is inadequate by conventional standards.

  17. Activity-based imaging probes of the proteasome.

    PubMed

    Carmony, Kimberly Cornish; Kim, Kyung Bo

    2013-09-01

    Over the years, the proteasome has been extensively investigated due to its crucial roles in many important signaling pathways and its implications in diseases. Two proteasome inhibitors--bortezomib and carfilzomib--have received FDA approval for the treatment of multiple myeloma, thereby validating the proteasome as a chemotherapeutic target. As a result, further research efforts have been focused on dissecting the complex biology of the proteasome to gain the insight required for developing next-generation proteasome inhibitors. It is clear that chemical probes have made significant contributions to these efforts, mostly by functioning as inhibitors that selectively block the catalytic activity of proteasomes. Analogues of these inhibitors are now providing additional tools for visualization of catalytically active proteasome subunits, several of which allow real-time monitoring of proteasome activity in living cells as well as in in vivo settings. These imaging probes will provide powerful tools for assessing the efficacy of proteasome inhibitors in clinical settings. In this review, we will focus on the recent efforts towards developing imaging probes of proteasomes, including the latest developments in immunoproteasome-selective imaging probes.

  18. Prediction of biomechanical trabecular bone properties with geometric features using MR imaging

    NASA Astrophysics Data System (ADS)

    Huber, Markus B.; Lancianese, Sarah L.; Ikpot, Imoh; Nagarajan, Mahesh B.; Lerner, Amy L.; Wismüller, Axel

    2010-03-01

    Trabecular bone parameters extracted from magnetic resonance (MR) images are compared in their ability to predict biomechanical properties determined through mechanical testing. Trabecular bone density and structural changes throughout the proximal tibia are indicative of several musculoskeletal disorders of the knee joint involving changes in the bone quality and the surrounding soft tissue. Recent studies have shown that MR imaging, most frequently applied in soft tissue imaging, also allows non-invasive 3-dimensional characterization of bone microstructure. Sophisticated MR image features that estimate local structural and geometric properties of the trabecular bone may improve the ability of MR imaging to determine local bone quality in vivo. The purpose of the current study is to use whole joint MR images to compare the performance of trabecular bone features extracted from the images in predicting biomechanical strength properties measured on the corresponding ex vivo specimens. The regional apparent bone volume fraction (appBVF) and scaling index method (SIM) derived features were calculated; a Multilayer Radial Basis Functions Network was then optimized to calculate the prediction accuracy as measured by the root mean square error (RSME) for each bone feature. The best prediction result was obtained with a SIM feature with the lowest prediction error (RSME=0.246) and the highest coefficient of determination (R2 = 0.769). The current study demonstrates that the combination of sophisticated bone structure features and supervised learning techniques can improve MR imaging as an in vivo imaging tool in determining local trabecular bone quality.

  19. [The hyperspectral camera side-scan geometric imaging in any direction considering the spectral mixing].

    PubMed

    Wang, Shu-Min; Zhang, Ai-Wu; Hu, Shao-Xing; Sun, Wei-Dong

    2014-07-01

    In order to correct the image distortion in the hyperspectral camera side-scan geometric Imaging, the image pixel geo-referenced algorithm was deduced in detail in the present paper, which is suitable to the linear push-broom camera side-scan imaging on the ground in any direction. It takes the orientation of objects in the navigation coordinates system into account. Combined with the ground sampling distance of geo-referenced image and the area of push broom imaging, the general process of geo-referenced image divided into grids is also presented. The new image rows and columns will be got through the geo-referenced image area dividing the ground sampling distance. Considering the error produced by round rule in the pixel grids generated progress, and the spectral mixing problem caused by traditional direct spectral sampling method in the process of image correction, the improved spectral sampling method based on the weighted fusion method was proposed. It takes the area proportion of adjacent pixels in the new generated pixel as coefficient and then the coefficients are normalized to avoid the spectral overflow. So the new generated pixel is combined with the geo-referenced adjacent pixels spectral. Finally the amounts of push-broom imaging experiments were taken on the ground, and the distortion images were corrected according to the algorithm proposed above. The results show that the linear image distortion correction algorithm is valid and robust. At the same time, multiple samples were selected in the corrected images to verify the spectral data. The results indicate that the improved spectral sampling method is better than the direct spectral sampling algorithm. It provides reference for the application of similar productions on the ground.

  20. Raman imaging of biofilms using gold sputtered fiber optic probes

    NASA Astrophysics Data System (ADS)

    Christopher, Christina Grace Charlet; Manoharan, Hariharan; Subrahmanyam, Aryasomayajula; Sai, V. V. Raghavendra

    2016-12-01

    In this work we report characterization of bacterial biofilm using gold sputtered optical fiber probe as substrates for confocal Raman spectroscopy measurements. The chemical composition and the heterogeneity of biofilms in the extracellular polymeric substances (EPS) was evaluated. The spatial distribution of bacterial biofilm on the substrates during their growth phase was studied using Raman imaging. Further, the influence of substrate's surface on bacterial adhesion was investigated by studying growth of biofilms on surfaces with hydrophilic and hydrophobic coatings. This study validates the use of gold sputtered optical fiber probes as SERS substrates in confocal microscopic configuration to identify and characterize clinically relevant biofilms.

  1. Two-photon fluorescent probe for cadmium imaging in cells.

    PubMed

    Liu, Yongyou; Dong, Xiaohu; Sun, Jian; Zhong, Cheng; Li, Boheng; You, Ximeng; Liu, Bifeng; Liu, Zhihong

    2012-04-21

    A novel two-photon excited fluorescent probe for cadmium (named as TPCd) was designed and synthesized utilizing a prodan (6-acetyl-2-methoxynaphthalene) derivative as the two-photon fluorophore and an o-phenylenediamine derivative as the Cd(2+) chelator, which possessed favorable photophysical properties and good water-solubility. The probe was designed with a photoinduced electron transfer (PET) mechanism and thus was weakly fluorescent itself. After binding with Cd(2+) which blocked the PET process, the fluorescence intensity of the probe was enhanced by up to 15-fold under one-photon excitation (OPE) and 27-fold under two-photon excitation (TPE), respectively. The two-photon action cross-section (Φδ) of the TPCd-Cd complex at 740 nm reached 109 GM compared to 3.6 GM for free TPCd, indicating the promising prospect of the probe in two-photon application. TPCd chelated Cd(2+) with 1 : 1 stoichiometry, and the apparent dissociation constant (K(d)) was 6.1 × 10(-5) M for the one-photon mode and 7.2 × 10(-5) M for the two-photon mode. The probe responded to Cd(2+) over a wide linear range from 0.1 to 30 μM with a detection limit of 0.04 μM. High selectivity of the probe towards Cd(2+) was acquired in Tris-HCl/sodium phosphate buffer. The probe was pH-independent in the biologically relevant pH range and non-toxic to living cells at reasonable concentration levels, warranting its in vivo applications. Through two-photon microscopy imaging, the probe was successfully applied to detect Cd(2+) uptake in living HepG2 cells.

  2. VLSI architectures for geometrical mapping problems in high-definition image processing

    NASA Technical Reports Server (NTRS)

    Kim, K.; Lee, J.

    1991-01-01

    This paper explores a VLSI architecture for geometrical mapping address computation. The geometric transformation is discussed in the context of plane projective geometry, which invokes a set of basic transformations to be implemented for the general image processing. The homogeneous and 2-dimensional cartesian coordinates are employed to represent the transformations, each of which is implemented via an augmented CORDIC as a processing element. A specific scheme for a processor, which utilizes full-pipelining at the macro-level and parallel constant-factor-redundant arithmetic and full-pipelining at the micro-level, is assessed to produce a single VLSI chip for HDTV applications using state-of-art MOS technology.

  3. A prospective microstructure imaging study in mixed-martial artists using geometric measures and diffusion tensor imaging: methods and findings.

    PubMed

    Mayer, Andrew R; Ling, Josef M; Dodd, Andrew B; Meier, Timothy B; Hanlon, Faith M; Klimaj, Stefan D

    2016-04-12

    Although diffusion magnetic resonance imaging (dMRI) has been widely used to characterize the effects of repetitive mild traumatic brain injury (rmTBI), to date no studies have investigated how novel geometric models of microstructure relate to more typical diffusion tensor imaging (DTI) sequences. Moreover, few studies have evaluated the sensitivity of different registration pipelines (non-linear, linear and tract-based spatial statistics) for detecting dMRI abnormalities in clinical populations. Results from single-subject analyses in healthy controls (HC) indicated a strong negative relationship between fractional anisotropy (FA) and orientation dispersion index (ODI) in both white and gray matter. Equally important, only moderate relationships existed between all other estimates of free/intracellular water volume fractions and more traditional DTI metrics (FA, mean, axial and radial diffusivity). These findings suggest that geometric measures provide differential information about the cellular microstructure relative to traditional DTI measures. Results also suggest greater sensitivity for non-linear registration pipelines that maximize the anatomical information available in T1-weighted images. Clinically, rmTBI resulted in a pattern of decreased FA and increased ODI, largely overlapping in space, in conjunction with increased intracellular and free water fractions, highlighting the potential role of edema following repeated head trauma. In summary, current results suggest that geometric models of diffusion can provide relatively unique information regarding potential mechanisms of pathology that contribute to long-term neurological damage.

  4. Correcting geometric and photometric distortion of document images on a smartphone

    NASA Astrophysics Data System (ADS)

    Simon, Christian; Williem; Park, In Kyu

    2015-01-01

    A set of document image processing algorithms for improving the optical character recognition (OCR) capability of smartphone applications is presented. The scope of the problem covers the geometric and photometric distortion correction of document images. The proposed framework was developed to satisfy industrial requirements. It is implemented on an off-the-shelf smartphone with limited resources in terms of speed and memory. Geometric distortions, i.e., skew and perspective distortion, are corrected by sending horizontal and vertical vanishing points toward infinity in a downsampled image. Photometric distortion includes image degradation from moiré pattern noise and specular highlights. Moiré pattern noise is removed using low-pass filters with different sizes independently applied to the background and text region. The contrast of the text in a specular highlighted area is enhanced by locally enlarging the intensity difference between the background and text while the noise is suppressed. Intensive experiments indicate that the proposed methods show a consistent and robust performance on a smartphone with a runtime of less than 1 s.

  5. Geometric Context and Orientation Map Combination for Indoor Corridor Modeling Using a Single Image

    NASA Astrophysics Data System (ADS)

    Baligh Jahromi, Ali; Sohn, Gunho

    2016-06-01

    Since people spend most of their time indoors, their indoor activities and related issues in health, security and energy consumption have to be understood. Hence, gathering and representing spatial information of indoor spaces in form of 3D models become very important. Considering the available data gathering techniques with respect to the sensors cost and data processing time, single images proved to be one of the reliable sources. Many of the current single image based indoor space modeling methods are defining the scene as a single box primitive. This domain-specific knowledge is usually not applicable in various cases where multiple corridors are joined at one scene. Here, we addressed this issue by hypothesizing-verifying multiple box primitives which represents the indoor corridor layout. Middle-level perceptual organization is the foundation of the proposed method, which relies on finding corridor layout boundaries using both detected line segments and virtual rays created by orthogonal vanishing points. Due to the presence of objects, shadows and occlusions, a comprehensive interpretation of the edge relations is often concealed. This necessitates the utilization of virtual rays to create a physically valid layout hypothesis. Many of the former methods used Orientation Map or Geometric Context to evaluate their proposed layout hypotheses. Orientation map is a map that reveals the local belief of region orientations computed from line segments, and in a segmented image geometric context uses color, texture, edge, and vanishing point cues to estimate the likelihood of each possible label for all super-pixels. Here, the created layout hypotheses are evaluated by an objective function which considers the fusion of orientation map and geometric context with respect to the horizontal viewing angle at each image pixel. Finally, the best indoor corridor layout hypothesis which gets the highest score from the scoring function will be selected and converted to a 3D

  6. Deformable image registration for geometrical evaluation of DIBH radiotherapy treatment of lung cancer patients

    NASA Astrophysics Data System (ADS)

    Ottosson, W.; Lykkegaard Andersen, J. A.; Borrisova, S.; Mellemgaard, A.; Behrens, C. F.

    2014-03-01

    Respiration and anatomical variation during radiotherapy (RT) of lung cancer yield dosimetric uncertainties of the delivered dose, possibly affecting the clinical outcome if not corrected for. Adaptive radiotherapy (ART), based on deformable image registration (DIR) and Deep-Inspiration-Breath-Hold (DIBH) gating can potentially improve the accuracy of RT. Purpose: The objective was to investigate the performance of contour propagation on repeated CT and Cone Beam CT (CBCT) images in DIBH compared to images acquired in free breathing (FB), using a recently released DIR software. Method: Three locally advanced non-small cell lung cancer patients were included, each with a planning-, midterm- and final CT (pCT, mCT, fCT) and 7 CBCTs acquired weekly and on the same day as the mCT and fCT. All imaging were performed in both FB and DIBH, using Varian RPM system for respiratory tracking. Delineations of anatomical structures were performed on each image set. The CT images were retrospective rigidly and deformable registered to all obtained images using the Varian Smart Adapt v. 11.0. The registered images were analysed for volume change and Dice Similarity Coefficient (DSC). Result: Geometrical similarities were found between propagated and manually delineated structures, with a slightly favour of FB imaging. Special notice should be taken to registrations where image artefacts or low tissue contrast are present. Conclusion: This study does not support the hypothesis that DIBH images perform better image registration than FB images. However DIR is a feasible tool for ART of lung cancer.

  7. Band Excitation in Scanning Probe Microscopy: Recognition and Functional Imaging

    NASA Astrophysics Data System (ADS)

    Jesse, S.; Vasudevan, R. K.; Collins, L.; Strelcov, E.; Okatan, M. B.; Belianinov, A.; Baddorf, A. P.; Proksch, R.; Kalinin, S. V.

    2014-04-01

    Field confinement at the junction between a biased scanning probe microscope's tip and solid surface enables local probing of various bias-induced transformations, such as polarization switching, ionic motion, and electrochemical reactions. The nanoscale size of the biased region, smaller or comparable to that of features such as grain boundaries and dislocations, potentially allows for the study of kinetics and thermodynamics at the level of a single defect. In contrast to classical statistically averaged approaches, this approach allows one to link structure to functionality and deterministically decipher associated mesoscopic and atomistic mechanisms. Furthermore, responses measured as a function of frequency and bias can serve as a fingerprint of local material functionality, allowing for local recognition imaging of inorganic and biological systems. This article reviews current progress in multidimensional scanning probe microscopy techniques based on band excitation time and voltage spectroscopies, including discussions on data acquisition, dimensionality reduction, and visualization, along with future challenges and opportunities for the field.

  8. Doped semiconductor nanocrystal based fluorescent cellular imaging probes.

    PubMed

    Maity, Amit Ranjan; Palmal, Sharbari; Basiruddin, S K; Karan, Niladri Sekhar; Sarkar, Suresh; Pradhan, Narayan; Jana, Nikhil R

    2013-06-21

    Doped semiconductor nanocrystals such as Mn doped ZnS, Mn doped ZnSe and Cu doped InZnS, are considered as new classes of fluorescent biological probes with low toxicity. Although the synthesis in high quality of such nanomaterials is now well established, transforming them into functional fluorescent probes remains a challenge. Here we report a fluorescent cellular imaging probe made of high quality doped semiconductor nanocrystals. We have identified two different coating approaches suitable for transforming the as synthesized hydrophobic doped semiconductor nanocrystals into water-soluble functional nanoparticles. Following these approaches we have synthesized TAT-peptide- and folate-functionalized nanoparticles of 10-80 nm hydrodynamic diameter and used them as a fluorescent cell label. The results shows that doped semiconductor nanocrystals can be an attractive alternative for conventional cadmium based quantum dots with low toxicity.

  9. A new phantom for image quality, geometric destortion, and HU calibration in MSCT and CBCT

    NASA Astrophysics Data System (ADS)

    Voigt, Johannes M.; Blendl, Christian; Selbach, Markus; Uphoff, Clemens; Fiebich, Martin

    2012-03-01

    Flat panel cone-beam computed tomography (CBCT) is developing to the state-of-the-art technique in several medical disciplines such as dental and otorhinolaryngological imaging. Dental and otorhinolaryngological CBCT systems offer a variety of different field-of-view sizes from 6.0 to 17.0 cm. Standard phantoms are only designed for the use in multi-slices CT (MSCT) and there is no phantom which provides detail structures for all common characteristic values and Hounsfield calibration. In this study we present a new phantom specially designed for use with MSCT and CBCT systems providing detail structures for MTF, 3D MTF, NPS, SNR, geometric distortion and HU calibration. With this phantom you'll only need one acquisition for image quality investigation and assurance. Materials and methods: The phantom design is shown in figure 1. To investigate the practicability, the phantom was scanned using dedicated MSCT-scanners, 3D C-arms und digital volume tomographs. The acquired axial image stacks were analyzed using a dedicated computer program, which is provided as an ImageJ plugin. The MTF was compared to other methodologies such as a thin wire, a sphere or noise response [10, 13, 14]. The HU values were also computed using other common methods. Results: These results are similar to the results of others studies [10, 13, 14]. The method has proven to be stable and delivers comparable results to other methodologies such as using a thin wire. The NPS was calculated for all materials. Furthermore, CT numbers for all materials were computed and compared to the desired values. The measurement of geometric deformation has proven to be accurate. Conclusion: A unique feature of this phantom is to compute the geometric deformation of the 3D-volume image. This offers the chance to improve accuracy, e.g. in dental implant planning. Another convenient feature is that the phantom needs to be scanned only once with otorhinolaryngological volume tomographs to be fully displayed. It is

  10. Doped semiconductor nanocrystal based fluorescent cellular imaging probes

    NASA Astrophysics Data System (ADS)

    Maity, Amit Ranjan; Palmal, Sharbari; Basiruddin, Sk; Karan, Niladri Sekhar; Sarkar, Suresh; Pradhan, Narayan; Jana, Nikhil R.

    2013-05-01

    Doped semiconductor nanocrystals such as Mn doped ZnS, Mn doped ZnSe and Cu doped InZnS, are considered as new classes of fluorescent biological probes with low toxicity. Although the synthesis in high quality of such nanomaterials is now well established, transforming them into functional fluorescent probes remains a challenge. Here we report a fluorescent cellular imaging probe made of high quality doped semiconductor nanocrystals. We have identified two different coating approaches suitable for transforming the as synthesized hydrophobic doped semiconductor nanocrystals into water-soluble functional nanoparticles. Following these approaches we have synthesized TAT-peptide- and folate-functionalized nanoparticles of 10-80 nm hydrodynamic diameter and used them as a fluorescent cell label. The results shows that doped semiconductor nanocrystals can be an attractive alternative for conventional cadmium based quantum dots with low toxicity.Doped semiconductor nanocrystals such as Mn doped ZnS, Mn doped ZnSe and Cu doped InZnS, are considered as new classes of fluorescent biological probes with low toxicity. Although the synthesis in high quality of such nanomaterials is now well established, transforming them into functional fluorescent probes remains a challenge. Here we report a fluorescent cellular imaging probe made of high quality doped semiconductor nanocrystals. We have identified two different coating approaches suitable for transforming the as synthesized hydrophobic doped semiconductor nanocrystals into water-soluble functional nanoparticles. Following these approaches we have synthesized TAT-peptide- and folate-functionalized nanoparticles of 10-80 nm hydrodynamic diameter and used them as a fluorescent cell label. The results shows that doped semiconductor nanocrystals can be an attractive alternative for conventional cadmium based quantum dots with low toxicity. Electronic supplementary information available: Characterization details of coating and

  11. Geometric Calibration of the Orion Optical Navigation Camera using Star Field Images

    NASA Astrophysics Data System (ADS)

    Christian, John A.; Benhacine, Lylia; Hikes, Jacob; D'Souza, Christopher

    2016-12-01

    The Orion Multi Purpose Crew Vehicle will be capable of autonomously navigating in cislunar space using images of the Earth and Moon. Optical navigation systems, such as the one proposed for Orion, require the ability to precisely relate the observed location of an object in a 2D digital image with the true corresponding line-of-sight direction in the camera's sensor frame. This relationship is governed by the camera's geometric calibration parameters — typically described by a set of five intrinsic parameters and five lens distortion parameters. While pre-flight estimations of these parameters will exist, environmental conditions often necessitate on-orbit recalibration. This calibration will be performed for Orion using an ensemble of star field images. This manuscript provides a detailed treatment of the theory and mathematics that will form the foundation of Orion's on-orbit camera calibration. Numerical results and examples are also presented.

  12. Geometric survey on magnetic resonance imaging of growth hormone producing pituitary adenoma.

    PubMed

    Bakhtiar, Yuriz; Hanaya, Ryosuke; Tokimura, Hiroshi; Hirano, Hirofumi; Oyoshi, Tatsuki; Fujio, Shingo; Bohara, Manoj; Arita, Kazunori

    2014-04-01

    Apart from the radiologic features regarding size and invasiveness, we had noticed some differences in morphology among types of pituitary adenomas. We conducted this study to verify the differences in radiologic morphology between growth hormone producing pituitary adenomas (GHoma) and nonfunctioning pituitary adenomas (NFoma). Pre-surgical magnetic resonance images (MRIs) were assessed in 50 cases of GHoma and 50 cases of NFoma. Geometric parameters on MRI were set in accordance with sellar anatomy. Intensity of T1-weighted image was not different between the two groups, but hypo-intensity of T2-weighted image was more frequently seen in GHoma. Predominant inferior extension of tumor was seen mostly in GHoma (88 vs. 38%). Extension of the tumor to the superior compartment of cavernous sinus was more frequent in NFoma. Pituitary gland was generally located superior to GHoma and postero-superior to NFoma. Growth characteristics of pituitary adenoma were confirmed to differ between GHoma and NFoma.

  13. Molecular Imaging Probes for Positron Emission Tomography and Optical Imaging of Sentinel Lymph Node and Tumor

    NASA Astrophysics Data System (ADS)

    Qin, Zhengtao

    Molecular imaging is visualizations and measurements of in vivo biological processes at the molecular or cellular level using specific imaging probes. As an emerging technology, biocompatible macromolecular or nanoparticle based targeted imaging probes have gained increasing popularities. Those complexes consist of a carrier, an imaging reporter, and a targeting ligand. The active targeting ability dramatically increases the specificity. And the multivalency effect may further reduce the dose while providing a decent signal. In this thesis, sentinel lymph node (SLN) mapping and cancer imaging are two research topics. The focus is to develop molecular imaging probes with high specificity and sensitivity, for Positron Emission Tomography (PET) and optical imaging. The objective of this thesis is to explore dextran radiopharmaceuticals and porous silicon nanoparticles based molecular imaging agents. Dextran polymers are excellent carriers to deliver imaging reporters or therapeutic agents due to its well established safety profile and oligosaccharide conjugation chemistry. There is also a wide selection of dextran polymers with different lengths. On the other hand, Silicon nanoparticles represent another class of biodegradable materials for imaging and drug delivery. The success in fluorescence lifetime imaging and enhancements of the immune activation potency was briefly discussed. Chapter 1 begins with an overview on current molecular imaging techniques and imaging probes. Chapter 2 presents a near-IR dye conjugated probe, IRDye 800CW-tilmanocept. Fluorophore density was optimized to generate the maximum brightness. It was labeled with 68Ga and 99mTc and in vivo SLN mapping was successfully performed in different animals, such as mice, rabbits, dogs and pigs. With 99mTc labeled IRDye 800CW-tilmanocept, chapter 3 introduces a two-day imaging protocol with a hand-held imager. Chapter 4 proposed a method to dual radiolabel the IRDye 800CW-tilmanocept with both 68Ga and

  14. Matching Aerial Images to 3D Building Models Using Context-Based Geometric Hashing.

    PubMed

    Jung, Jaewook; Sohn, Gunho; Bang, Kiin; Wichmann, Andreas; Armenakis, Costas; Kada, Martin

    2016-06-22

    A city is a dynamic entity, which environment is continuously changing over time. Accordingly, its virtual city models also need to be regularly updated to support accurate model-based decisions for various applications, including urban planning, emergency response and autonomous navigation. A concept of continuous city modeling is to progressively reconstruct city models by accommodating their changes recognized in spatio-temporal domain, while preserving unchanged structures. A first critical step for continuous city modeling is to coherently register remotely sensed data taken at different epochs with existing building models. This paper presents a new model-to-image registration method using a context-based geometric hashing (CGH) method to align a single image with existing 3D building models. This model-to-image registration process consists of three steps: (1) feature extraction; (2) similarity measure; and matching, and (3) estimating exterior orientation parameters (EOPs) of a single image. For feature extraction, we propose two types of matching cues: edged corner features representing the saliency of building corner points with associated edges, and contextual relations among the edged corner features within an individual roof. A set of matched corners are found with given proximity measure through geometric hashing, and optimal matches are then finally determined by maximizing the matching cost encoding contextual similarity between matching candidates. Final matched corners are used for adjusting EOPs of the single airborne image by the least square method based on collinearity equations. The result shows that acceptable accuracy of EOPs of a single image can be achievable using the proposed registration approach as an alternative to a labor-intensive manual registration process.

  15. Matching Aerial Images to 3D Building Models Using Context-Based Geometric Hashing

    PubMed Central

    Jung, Jaewook; Sohn, Gunho; Bang, Kiin; Wichmann, Andreas; Armenakis, Costas; Kada, Martin

    2016-01-01

    A city is a dynamic entity, which environment is continuously changing over time. Accordingly, its virtual city models also need to be regularly updated to support accurate model-based decisions for various applications, including urban planning, emergency response and autonomous navigation. A concept of continuous city modeling is to progressively reconstruct city models by accommodating their changes recognized in spatio-temporal domain, while preserving unchanged structures. A first critical step for continuous city modeling is to coherently register remotely sensed data taken at different epochs with existing building models. This paper presents a new model-to-image registration method using a context-based geometric hashing (CGH) method to align a single image with existing 3D building models. This model-to-image registration process consists of three steps: (1) feature extraction; (2) similarity measure; and matching, and (3) estimating exterior orientation parameters (EOPs) of a single image. For feature extraction, we propose two types of matching cues: edged corner features representing the saliency of building corner points with associated edges, and contextual relations among the edged corner features within an individual roof. A set of matched corners are found with given proximity measure through geometric hashing, and optimal matches are then finally determined by maximizing the matching cost encoding contextual similarity between matching candidates. Final matched corners are used for adjusting EOPs of the single airborne image by the least square method based on collinearity equations. The result shows that acceptable accuracy of EOPs of a single image can be achievable using the proposed registration approach as an alternative to a labor-intensive manual registration process. PMID:27338410

  16. Research on automatic optimization of ground control points in image geometric rectification based on Voronoi diagram

    NASA Astrophysics Data System (ADS)

    Li, Ying; Cheng, Bo

    2009-10-01

    With the development of remote sensing satellites, the data quantity of remote sensing image is increasing tremendously, which brings a huge workload to the image geometric rectification through manual ground control point (GCP) selections. GCP database is one of the effective methods to cut down manual operation. The GCP loaded from database is generally redundant, which may result in a rectification slowdown. How to automatically optimize these ground control points is a problem that should be resolved urgently. According to the basic theory of geometric rectification and the principle of GCP selection, this paper deeply comprehends some existing methods about automatic optimization of GCP, and puts forward a new method of automatic optimization of GCP based on voronoi diagram to filter ground control points from the overfull ones without manual subjectivity for better accuracy. The paper is organized as follows: First, it clarifies the basic theory of remote sensing image multinomial geometric rectification and the arithmetic of how to get the GCP error. Second, it particularly introduces the voronoi diagram including its origin, development and characteristics, especially the creating process. Third, considering the deficiencies of existing methods about automatic optimization of GCP, the paper presents the idea of applying voronoi diagram to filter GCP in order to complete automatic optimization. During this process, it advances the conception of single GCP's importance value based on voronoi diagram. Then by integrating the GCP error and GCP's importance value, the paper gives the theory and the flow of automatic optimization of GCPs as well. It also presents an example of the application of this method. In the conclusion, it points out the advantages of automatic optimization of GCP based on the voronoi diagram.

  17. Imaging phluorin-based probes at hippocampal synapses.

    PubMed

    Royle, Stephen J; Granseth, Björn; Odermatt, Benjamin; Derevier, Aude; Lagnado, Leon

    2008-01-01

    Accurate measurement of synaptic vesicle exocytosis and endocytosis is crucial to understanding the molecular basis of synaptic transmission. The fusion of a pH-sensitive green fluorescent protein (pHluorin) to various synaptic vesicle proteins has allowed the study of synaptic vesicle recycling in real time. Two such probes, synaptopHluorin and sypHy, have been imaged at synapses of hippocampal neurons in culture. The combination of these reporters with techniques for molecular interference, such as RNAi allows for the study of molecules involved in synaptic vesicle recycling. Here the authors describe methods for the culture and transfection of hippocampal neurons, imaging of pHluorin-based probes at synapses and analysis of pHluorin signals down to the resolution of individual synaptic vesicles.

  18. A geometric photography model for determining cloud top heights using MISR images

    NASA Astrophysics Data System (ADS)

    He, Yongjian; Qiu, Xinfa; Sun, Zhian; Li, Qiang

    2015-10-01

    Cloud top height (CTH) is an important factor in weather forecasting and monitoring. An accurate CTH has scientific significance for improving the quality of both weather analyses and numerical weather prediction. The three-dimensional geometric method has been widely recognized as a CTH calculation method that provides relatively high accuracy. In this paper, we used the theory of digital photogrammetry and remote sensing technology to establish a geometric photography model (GPM) that can simultaneously determine CTHs and cloud movement speed (CMS) by introducing the CMS into the collinearity equation of photogrammetry. The CTH is derived by constructing three-dimensional image pairs of multitemporal Multiangle Imaging Spectroradiometer (MISR) red spectral band images from three angles. Compared with CTHs observed by ground-based lidar at the United States Southern Great Plains, the difference of CTHs using the GPM relative to the reference value was less than 300 m. By analyzing the ground control points, the GPM error is estimated to be approximately 300 m. Compared with MISR CTH data, the CTHs calculated in this study were similar to that of MISR without wind.

  19. A novel scheme for automatic nonrigid image registration using deformation invariant feature and geometric constraint

    NASA Astrophysics Data System (ADS)

    Deng, Zhipeng; Lei, Lin; Zhou, Shilin

    2015-10-01

    Automatic image registration is a vital yet challenging task, particularly for non-rigid deformation images which are more complicated and common in remote sensing images, such as distorted UAV (unmanned aerial vehicle) images or scanning imaging images caused by flutter. Traditional non-rigid image registration methods are based on the correctly matched corresponding landmarks, which usually needs artificial markers. It is a rather challenging task to locate the accurate position of the points and get accurate homonymy point sets. In this paper, we proposed an automatic non-rigid image registration algorithm which mainly consists of three steps: To begin with, we introduce an automatic feature point extraction method based on non-linear scale space and uniform distribution strategy to extract the points which are uniform distributed along the edge of the image. Next, we propose a hybrid point matching algorithm using DaLI (Deformation and Light Invariant) descriptor and local affine invariant geometric constraint based on triangulation which is constructed by K-nearest neighbor algorithm. Based on the accurate homonymy point sets, the two images are registrated by the model of TPS (Thin Plate Spline). Our method is demonstrated by three deliberately designed experiments. The first two experiments are designed to evaluate the distribution of point set and the correctly matching rate on synthetic data and real data respectively. The last experiment is designed on the non-rigid deformation remote sensing images and the three experimental results demonstrate the accuracy, robustness, and efficiency of the proposed algorithm compared with other traditional methods.

  20. Real-time geometric scene estimation for RGBD images using a 3D box shape grammar

    NASA Astrophysics Data System (ADS)

    Willis, Andrew R.; Brink, Kevin M.

    2016-06-01

    This article describes a novel real-time algorithm for the purpose of extracting box-like structures from RGBD image data. In contrast to conventional approaches, the proposed algorithm includes two novel attributes: (1) it divides the geometric estimation procedure into subroutines having atomic incremental computational costs, and (2) it uses a generative "Block World" perceptual model that infers both concave and convex box elements from detection of primitive box substructures. The end result is an efficient geometry processing engine suitable for use in real-time embedded systems such as those on an UAVs where it is intended to be an integral component for robotic navigation and mapping applications.

  1. Vision ray calibration for the quantitative geometric description of general imaging and projection optics in metrology

    SciTech Connect

    Bothe, Thorsten; Li Wansong; Schulte, Michael; von Kopylow, Christoph; Bergmann, Ralf B.; Jueptner, Werner P. O.

    2010-10-20

    Exact geometric calibration of optical devices like projectors or cameras is the basis for utilizing them in quantitative metrological applications. The common state-of-the-art photogrammetric pinhole-imaging-based models with supplemental polynomial corrections fail in the presence of nonsymmetric or high-spatial-frequency distortions and in describing caustics efficiently. These problems are solved by our vision ray calibration (VRC), which is proposed in this paper. The VRC takes an optical mapping system modeled as a black box and directly delivers corresponding vision rays for each mapped pixel. The underlying model, the calibration process, and examples are visualized and reviewed, demonstrating the potential of the VRC.

  2. Probes for multidimensional nanospectroscopic imaging and methods of fabrication thereof

    SciTech Connect

    Weber-Bargioni, Alexander; Cabrini, Stefano; Bao, Wei; Melli, Mauro; Yablonovitch, Eli; Schuck, Peter J

    2015-03-17

    This disclosure provides systems, methods, and apparatus related to probes for multidimensional nanospectroscopic imaging. In one aspect, a method includes providing a transparent tip comprising a dielectric material. A four-sided pyramidal-shaped structure is formed at an apex of the transparent tip using a focused ion beam. Metal layers are deposited over two opposing sides of the four-sided pyramidal-shaped structure.

  3. What do users really perceive: probing the subjective image quality

    NASA Astrophysics Data System (ADS)

    Nyman, Göte; Radun, Jenni; Leisti, Tuomas; Oja, Joni; Ojanen, Harri; Olives, Jean-Luc; Vuori, Tero; Häkkinen, Jukka

    2006-01-01

    Image evaluation schemes must fulfill both objective and subjective requirements. Objective image quality evaluation models are often preferred over subjective quality evaluation, because of their fastness and cost-effectiveness. However, the correlation between subjective and objective estimations is often poor. One of the key reasons for this is that it is not known what image features subjects use when they evaluate image quality. We have studied subjective image quality evaluation in the case of image sharpness. We used an Interpretation-based Quality (IBQ) approach, which combines both qualitative and quantitative approaches to probe the observer's quality experience. Here we examine how naive subjects experienced and classified natural images, whose sharpness was changing. Together the psychometric and qualitative information obtained allows the correlation of quantitative evaluation data with its underlying subjective attribute sets. This offers guidelines to product designers and developers who are responsible for image quality. Combining these methods makes the end-user experience approachable and offers new ways to improve objective image quality evaluation schemes.

  4. Engineering imaging probes and molecular machines for nanomedicine.

    PubMed

    Tong, Sheng; Cradick, Thomas J; Ma, Yan; Dai, Zhifei; Bao, Gang

    2012-10-01

    Nanomedicine is an emerging field that integrates nanotechnology, biomolecular engineering, life sciences and medicine; it is expected to produce major breakthroughs in medical diagnostics and therapeutics. Due to the size-compatibility of nano-scale structures and devices with proteins and nucleic acids, the design, synthesis and application of nanoprobes, nanocarriers and nanomachines provide unprecedented opportunities for achieving a better control of biological processes, and drastic improvements in disease detection, therapy, and prevention. Recent advances in nanomedicine include the development of functional nanoparticle based molecular imaging probes, nano-structured materials as drug/gene carriers for in vivo delivery, and engineered molecular machines for treating single-gene disorders. This review focuses on the development of molecular imaging probes and engineered nucleases for nanomedicine, including quantum dot bioconjugates, quantum dot-fluorescent protein FRET probes, molecular beacons, magnetic and gold nanoparticle based imaging contrast agents, and the design and validation of zinc finger nucleases (ZFNs) and TAL effector nucleases (TALENs) for gene targeting. The challenges in translating nanomedicine approaches to clinical applications are discussed.

  5. DNA nanostructure-based imaging probes and drug carriers.

    PubMed

    Zhan, Pengfei; Jiang, Qiao; Wang, Zhen-Gang; Li, Na; Yu, Haiyin; Ding, Baoquan

    2014-09-01

    Self-assembled DNA nanostructures are well-defined nanoscale shapes, with uniform sizes, precise spatial addressability, and excellent biocompatibility. With these features, DNA nanostructures show great potential for biomedical applications; various DNA-based biomedical imaging probes or payload delivery carriers have been developed. In this review, we summarize the recent developments of DNA-based nanostructures as tools for diagnosis and cancer therapy. The biological effects that are brought about by DNA nanostructures are highlighted by in vitro and in vivo imaging, antitumor drug delivery, and immunostimulatory therapy. The challenges and perspectives of DNA nanostructures in the field of nanomedicine are discussed.

  6. Photoacoustic imaging of fluorophores using pump-probe excitation

    PubMed Central

    Märk, Julia; Schmitt, Franz-Josef; Theiss, Christoph; Dortay, Hakan; Friedrich, Thomas; Laufer, Jan

    2015-01-01

    A pump-probe technique for the detection of fluorophores in tomographic PA images is introduced. It is based on inducing stimulated emission in fluorescent molecules, which in turn modulates the amount of thermalized energy, and hence the PA signal amplitude. A theoretical model of the PA signal generation in fluorophores is presented and experimentally validated on cuvette measurements made in solutions of Rhodamine 6G, a fluorophore of known optical and molecular properties. The application of this technique to deep tissue tomographic PA imaging is demonstrated by determining the spatial distribution of a near-infrared fluorophore in a tissue phantom. PMID:26203378

  7. Integrated transrectal probe for translational ultrasound-photoacoustic imaging

    NASA Astrophysics Data System (ADS)

    Bell, Kevan L.; Harrison, Tyler; Usmani, Nawaid; Zemp, Roger J.

    2016-03-01

    A compact photoacoustic transrectal probe is constructed for improved imaging in brachytherapy treatment. A 192 element 5 MHz linear transducer array is mounted inside a small 3D printed casing along with an array of optical fibers. The device is fed by a pump laser and tunable NIR-optical parametric oscillator with data collected by a Verasonics ultrasound platform. This assembly demonstrates improved imaging of brachytherapy seeds in phantoms with depths up to 5 cm. The tuneable excitation in combination with standard US integration provides adjustable contrast between the brachytherapy seeds, blood filled tubes and background tissue.

  8. Localized charge imaging with scanning Kelvin probe microscopy

    NASA Astrophysics Data System (ADS)

    Orihuela, M. F.; Somoza, A. M.; Colchero, J.; Ortuño, M.; Palacios-Lidón, E.

    2017-01-01

    In this work, we propose an intuitive and easily implementable approach to model and interpret scanning Kelvin probe microscopy images of insulating samples with localized charges. The method, based on the image charges method, has been validated by a systematic comparison of its predictions with experimental measurements performed on charge domains of different sizes, injected in polymethyl methacrylate discontinuous films. The agreement between predictions and experimental lateral profiles, as well as with spectroscopy tip-sample distance curves, supports its consistency. The proposed procedure allows obtaining quantitative information such as total charge and the size of a charge domain and allows estimating the most adequate measurement parameters.

  9. In vivo reproducibility of robotic probe placement for an integrated US-CT image-guided radiation therapy system

    NASA Astrophysics Data System (ADS)

    Lediju Bell, Muyinatu A.; Sen, H. Tutkun; Iordachita, Iulian; Kazanzides, Peter; Wong, John

    2014-03-01

    Radiation therapy is used to treat cancer by delivering high-dose radiation to a pre-defined target volume. Ultrasound (US) has the potential to provide real-time, image-guidance of radiation therapy to identify when a target moves outside of the treatment volume (e.g. due to breathing), but the associated probe-induced tissue deformation causes local anatomical deviations from the treatment plan. If the US probe is placed to achieve similar tissue deformations in the CT images required for treatment planning, its presence causes streak artifacts that will interfere with treatment planning calculations. To overcome these challenges, we propose robot-assisted placement of a real ultrasound probe, followed by probe removal and replacement with a geometrically-identical, CT-compatible model probe. This work is the first to investigate in vivo deformation reproducibility with the proposed approach. A dog's prostate, liver, and pancreas were each implanted with three 2.38-mm spherical metallic markers, and the US probe was placed to visualize the implanted markers in each organ. The real and model probes were automatically removed and returned to the same position (i.e. position control), and CT images were acquired with each probe placement. The model probe was also removed and returned with the same normal force measured with the real US probe (i.e. force control). Marker positions in CT images were analyzed to determine reproducibility, and a corollary reproducibility study was performed on ex vivo tissue. In vivo results indicate that tissue deformations with the real probe were repeatable under position control for the prostate, liver, and pancreas, with median 3D reproducibility of 0.3 mm, 0.3 mm, and 1.6 mm, respectively, compared to 0.6 mm for the ex vivo tissue. For the prostate, the mean 3D tissue displacement errors between the real and model probes were 0.2 mm under position control and 0.6 mm under force control, which are both within acceptable

  10. Probing synaptic function in dendrites with calcium imaging.

    PubMed

    Siegel, Friederike; Lohmann, Christian

    2013-04-01

    Calcium imaging has become a widely used technique to probe neuronal activity on the cellular and subcellular levels. In contrast to standard electrophysiological methods, calcium imaging resolves sub- and suprathreshold activation patterns in structures as small as fine dendritic branches and spines. This review highlights recent findings gained on the subcellular level using calcium imaging, with special emphasis on synaptic transmission and plasticity in individual spines. Since imaging allows monitoring activity across populations of synapses, it has recently been adopted to investigate how dendrites integrate information from many synapses. Future experiments, ideally carried out in vivo, will reveal how the dendritic tree integrates and computes afferent signals. For example, it is now possible to directly test the concept that dendritic inputs are clustered and that single dendrites or dendritic stretches act as independent computational units.

  11. Geometric accuracy of Landsat-4 and Landsat-5 Thematic Mapper images.

    USGS Publications Warehouse

    Borgeson, W.T.; Batson, R.M.; Kieffer, H.H.

    1985-01-01

    The geometric accuracy of the Landsat Thematic Mappers was assessed by a linear least-square comparison of the positions of conspicuous ground features in digital images with their geographic locations as determined from 1:24 000-scale maps. For a Landsat-5 image, the single-dimension standard deviations of the standard digital product, and of this image with additional linear corrections, are 11.2 and 10.3 m, respectively (0.4 pixel). An F-test showed that skew and affine distortion corrections are not significant. At this level of accuracy, the granularity of the digital image and the probable inaccuracy of the 1:24 000 maps began to affect the precision of the comparison. The tested image, even with a moderate accuracy loss in the digital-to-graphic conversion, meets National Horizontal Map Accuracy standards for scales of 1:100 000 and smaller. Two Landsat-4 images, obtained with the Multispectral Scanner on and off, and processed by an interim software system, contain significant skew and affine distortions. -Authors

  12. [The linear hyperspectral camera rotating scan imaging geometric correction based on the precise spectral sampling].

    PubMed

    Wang, Shu-min; Zhang, Ai-wu; Hu, Shao-xing; Wang, Jing-meng; Meng, Xian-gang; Duan, Yi-hao; Sun, Wei-dong

    2015-02-01

    As the rotation speed of ground based hyperspectral imaging system is too fast in the image collection process, which exceeds the speed limitation, there is data missed in the rectified image, it shows as the_black lines. At the same time, there is serious distortion in the collected raw images, which effects the feature information classification and identification. To solve these problems, in this paper, we introduce the each component of the ground based hyperspectral imaging system at first, and give the general process of data collection. The rotation speed is controlled in data collection process, according to the image cover area of each frame and the image collection speed of the ground based hyperspectral imaging system, And then the spatial orientation model is deduced in detail combining with the star scanning angle, stop scanning angle and the minimum distance between the sensor and the scanned object etc. The oriented image is divided into grids and resampled with new spectral. The general flow of distortion image corrected is presented in this paper. Since the image spatial resolution is different between the adjacent frames, and in order to keep the highest image resolution of corrected image, the minimum ground sampling distance is employed as the grid unit to divide the geo-referenced image. Taking the spectral distortion into account caused by direct sampling method when the new uniform grids and the old uneven grids are superimposed to take the pixel value, the precise spectral sampling method based on the position distribution is proposed. The distortion image collected in Lao Si Cheng ruin which is in the Zhang Jiajie town Hunan province is corrected through the algorithm proposed on above. The features keep the original geometric characteristics. It verifies the validity of the algorithm. And we extract the spectral of different features to compute the correlation coefficient. The results show that the improved spectral sampling method is

  13. BMI and WHR Are Reflected in Female Facial Shape and Texture: A Geometric Morphometric Image Analysis

    PubMed Central

    Mayer, Christine; Windhager, Sonja; Schaefer, Katrin; Mitteroecker, Philipp

    2017-01-01

    Facial markers of body composition are frequently studied in evolutionary psychology and are important in computational and forensic face recognition. We assessed the association of body mass index (BMI) and waist-to-hip ratio (WHR) with facial shape and texture (color pattern) in a sample of young Middle European women by a combination of geometric morphometrics and image analysis. Faces of women with high BMI had a wider and rounder facial outline relative to the size of the eyes and lips, and relatively lower eyebrows. Furthermore, women with high BMI had a brighter and more reddish skin color than women with lower BMI. The same facial features were associated with WHR, even though BMI and WHR were only moderately correlated. Yet BMI was better predictable than WHR from facial attributes. After leave-one-out cross-validation, we were able to predict 25% of variation in BMI and 10% of variation in WHR by facial shape. Facial texture predicted only about 3–10% of variation in BMI and WHR. This indicates that facial shape primarily reflects total fat proportion, rather than the distribution of fat within the body. The association of reddish facial texture in high-BMI women may be mediated by increased blood pressure and superficial blood flow as well as diet. Our study elucidates how geometric morphometric image analysis serves to quantify the effect of biological factors such as BMI and WHR to facial shape and color, which in turn contributes to social perception. PMID:28052103

  14. Traffic sign detection in MLS acquired point clouds for geometric and image-based semantic inventory

    NASA Astrophysics Data System (ADS)

    Soilán, Mario; Riveiro, Belén; Martínez-Sánchez, Joaquín; Arias, Pedro

    2016-04-01

    Nowadays, mobile laser scanning has become a valid technology for infrastructure inspection. This technology permits collecting accurate 3D point clouds of urban and road environments and the geometric and semantic analysis of data became an active research topic in the last years. This paper focuses on the detection of vertical traffic signs in 3D point clouds acquired by a LYNX Mobile Mapper system, comprised of laser scanning and RGB cameras. Each traffic sign is automatically detected in the LiDAR point cloud, and its main geometric parameters can be automatically extracted, therefore aiding the inventory process. Furthermore, the 3D position of traffic signs are reprojected on the 2D images, which are spatially and temporally synced with the point cloud. Image analysis allows for recognizing the traffic sign semantics using machine learning approaches. The presented method was tested in road and urban scenarios in Galicia (Spain). The recall results for traffic sign detection are close to 98%, and existing false positives can be easily filtered after point cloud projection. Finally, the lack of a large, publicly available Spanish traffic sign database is pointed out.

  15. Counteracting geometrical attacks on robust image watermarking by constructing a deformable pyramid transform

    NASA Astrophysics Data System (ADS)

    Wang, Chuntao; Ni, Jiangqun; Zhang, Dong

    2013-12-01

    Counteracting geometrical attacks remains one of the most challenging problems in robust watermarking. In this paper, we resist rotation, scaling, and translation (RST) by constructing a kind of deformable pyramid transform (DPT) that is shift-invariant, steerable, and scalable. The DPT is extended from a closed-form polar-separable steerable pyramid transform (SPT). The radial component of the SPT's basis filters is taken as the kernel of the scalable basis filters, and the angular component is used for the steerable basis filters. The shift-invariance is inherited from the SPT by retaining undecimated high-pass and band-pass subbands. Based on the designed DPT, we theoretically derive interpolation functions for steerability and scalability and synchronization mechanisms for translation, rotation, and scaling. By exploiting the preferable characteristics of DPT, we develop a new template-based robust image watermarking scheme that is resilient to RST. Translation invariance is achieved by taking the Fourier magnitude of the cover image as the DPT's input. The resilience to rotation and scaling is obtained using the synchronization mechanisms for rotation and scaling, for which an efficient template-matching algorithm has been devised. Extensive simulations show that the proposed scheme is highly robust to geometrical attacks, such as RST, cropping, and row/column line removal, as well as common signal processing attacks such as JPEG compression, additive white Gaussian noise, and median filtering.

  16. Advances in Imaging Techniques and Genetically Encoded Probes for Photoacoustic Imaging

    PubMed Central

    Liu, Chengbo; Gong, Xiaojing; Lin, Riqiang; Liu, Feng; Chen, Jingqin; Wang, Zhiyong; Song, Liang; Chu, Jun

    2016-01-01

    Photoacoustic (PA) imaging is a rapidly emerging biomedical imaging modality that is capable of visualizing cellular and molecular functions with high detection sensitivity and spatial resolution in deep tissue. Great efforts and progress have been made on the development of various PA imaging technologies with improved resolution and sensitivity over the past two decades. Various PA probes with high contrast have also been extensively developed, with many important biomedical applications. In comparison with chemical dyes and nanoparticles, genetically encoded probes offer easier labeling of defined cells within tissues or proteins of interest within a cell, have higher stability in vivo, and eliminate the need for delivery of exogenous substances. Genetically encoded probes have thus attracted increasing attention from researchers in engineering and biomedicine. In this review, we aim to provide an overview of the existing PA imaging technologies and genetically encoded PA probes, and describe further improvements in PA imaging techniques and the near-infrared photochromic protein BphP1, the most sensitive genetically encoded probe thus far, as well as the potential biomedical applications of BphP1-based PA imaging in vivo. PMID:27877244

  17. Functional Scanning Probe Imaging of Nanostructured Solar Energy Materials.

    PubMed

    Giridharagopal, Rajiv; Cox, Phillip A; Ginger, David S

    2016-09-20

    From hybrid perovskites to semiconducting polymer/fullerene blends for organic photovoltaics, many new materials being explored for energy harvesting and storage exhibit performance characteristics that depend sensitively on their nanoscale morphology. At the same time, rapid advances in the capability and accessibility of scanning probe microscopy methods over the past decade have made it possible to study processing/structure/function relationships ranging from photocurrent collection to photocarrier lifetimes with resolutions on the scale of tens of nanometers or better. Importantly, such scanning probe methods offer the potential to combine measurements of local structure with local function, and they can be implemented to study materials in situ or devices in operando to better understand how materials evolve in time in response to an external stimulus or environmental perturbation. This Account highlights recent advances in the development and application of scanning probe microscopy methods that can help address such questions while filling key gaps between the capabilities of conventional electron microscopy and newer super-resolution optical methods. Focusing on semiconductor materials for solar energy applications, we highlight a range of electrical and optoelectronic scanning probe microscopy methods that exploit the local dynamics of an atomic force microscope tip to probe key properties of the solar cell material or device structure. We discuss how it is possible to extract relevant device properties using noncontact scanning probe methods as well as how these properties guide materials development. Specifically, we discuss intensity-modulated scanning Kelvin probe microscopy (IM-SKPM), time-resolved electrostatic force microscopy (trEFM), frequency-modulated electrostatic force microscopy (FM-EFM), and cantilever ringdown imaging. We explain these developments in the context of classic atomic force microscopy (AFM) methods that exploit the physics of

  18. Imaging Low-Frequency Earthquakes with Geometric-Mean Reverse Time Migration

    NASA Astrophysics Data System (ADS)

    Nakata, N.; Beroza, G. C.; Cruz-Atienza, V. M.

    2015-12-01

    Time reversal is a powerful tool to image directly both the location and mechanism of sources. This technique assumes seismic velocities in the medium and propagates time-reversed observations of ground motion from each receiver location. Assuming an accurate velocity model and adequate array aperture, the waves will focus at the source location. Although multiple sensors are used simultaneously to estimate the source parameters, we can only image temporally compact sources due to a technical limitation of back projection. In this study, we propose a new approach for passive seismic migration that contains crosscorrelation within the time-reversal scheme. We first individually extrapolate wavefields at each receiver, and then crosscorrelate these wavefields (as a product in the frequency domain: Geometric-mean RTM, GmRTM). Because of the correlation, we can accumulate the energy of sources along the time axis in the image domain and enhance the source signals when the source has extended duration. As a test of this technique, we apply our RTM to synthetic earthquake waveforms and low-frequency earthquakes in Mexico. Results in Guerrero are compared with tectonic tremor locations determined with an independent technique, namely the Tremor Energy and Polarization (TREP) method. We successfully improve the SNR of the source image compared with conventional time-reversal imaging.

  19. The Geospectral Camera: a Compact and Geometrically Precise Hyperspectral and High Spatial Resolution Imager

    NASA Astrophysics Data System (ADS)

    Delauré, B.; Michiels, B.; Biesemans, J.; Livens, S.; Van Achteren, T.

    2013-04-01

    Small unmanned aerial vehicles are increasingly being employed for environmental monitoring at local scale, which drives the demand for compact and lightweight spectral imagers. This paper describes the geospectral camera, which is a novel compact imager concept. The camera is built around an innovative detector which has two sensor elements on a single chip and therefore offers the functionality of two cameras within the volume of a single one. The two sensor elements allow the camera to derive both spectral information as well as geometric information (high spatial resolution imagery and a digital surface model) of the scene of interest. A first geospectral camera prototype has been developed. It uses a linear variable optical filter which is installed in front of one of the two sensors of the MEDUSA CMOS imager chip. A accompanying software approach has been developed which exploits the simultaneous information of the two sensors in order to extract an accurate spectral image product. This method has been functionally demonstrated by applying it on image data acquired during an airborne acquisition.

  20. An enzymatically activated fluorescence probe for targeted tumor imaging

    PubMed Central

    Kamiya, Mako; Kobayashi, Hisataka; Hama, Yukihiro; Koyama, Yoshinori; Bernardo, Marcelino; Nagano, Tetsuo; Choyke, Peter L.; Urano, Yasuteru

    2008-01-01

    β-Galactosidase is a widely used reporter enzyme, but although several substrates are available for in vitro detection, its application for in vivo optical imaging remains a challenge. To obtain a probe suitable for in vivo use, we modified our previously developed activatable fluorescence probe, TG-βGal (J. Am. Chem. Soc., 2005, 127, 4888-4894), on the basis of photochemical and photophysical experiments. The new probe, AM-TG-βGal, provides a dramatic fluorescence enhancement upon reaction with β-galactosidase, and further hydrolysis of the ester moiety by ubiquitous intracellular esterases affords a hydrophilic product that is well retained within the cells without loss of fluorescence. We used a mouse tumor model to assess the practical utility of AM-TG-βGal, after confirming that tumors in the model could be labeled with avidin-β-galactosidase conjugate. This conjugate was administered to the mice in vivo, followed by AM-TG-βGal, and subsequent ex vivo fluorescence imaging clearly visualized intraperitoneal tumors as small as 200 μm. This strategy has potential clinical application, for example in video-assisted laparoscopic tumor resection. PMID:17352471

  1. Photonic Doppler velocimetry lens array probe incorporating stereo imaging

    DOEpatents

    Malone, Robert M.; Kaufman, Morris I.

    2015-09-01

    A probe including a multiple lens array is disclosed to measure velocity distribution of a moving surface along many lines of sight. Laser light, directed to the moving surface is reflected back from the surface and is Doppler shifted, collected into the array, and then directed to detection equipment through optic fibers. The received light is mixed with reference laser light and using photonic Doppler velocimetry, a continuous time record of the surface movement is obtained. An array of single-mode optical fibers provides an optic signal to the multiple lens array. Numerous fibers in a fiber array project numerous rays to establish many measurement points at numerous different locations. One or more lens groups may be replaced with imaging lenses so a stereo image of the moving surface can be recorded. Imaging a portion of the surface during initial travel can determine whether the surface is breaking up.

  2. Fluorescent probes for super-resolution imaging in living cells.

    PubMed

    Fernández-Suárez, Marta; Ting, Alice Y

    2008-12-01

    In 1873, Ernst Abbe discovered that features closer than approximately 200 nm cannot be resolved by lens-based light microscopy. In recent years, however, several new far-field super-resolution imaging techniques have broken this diffraction limit, producing, for example, video-rate movies of synaptic vesicles in living neurons with 62 nm spatial resolution. Current research is focused on further improving spatial resolution in an effort to reach the goal of video-rate imaging of live cells with molecular (1-5 nm) resolution. Here, we describe the contributions of fluorescent probes to far-field super-resolution imaging, focusing on fluorescent proteins and organic small-molecule fluorophores. We describe the features of existing super-resolution fluorophores and highlight areas of importance for future research and development.

  3. Band Excitation in Scanning Probe Microscopy: Recognition and Functional Imaging

    SciTech Connect

    Jesse, Stephen; Vasudevan, Dr. Rama; Collins, Liam; Strelcov, Evgheni; Okatan, Mahmut B; Belianinov, Alex; Baddorf, Arthur P; Proksch, Roger; Kalinin, Sergei V

    2014-01-01

    Field confinement at the junction between a biased scanning probe microscope s (SPM) tip and solid surface enables local probing of various bias-induced transformations such as polarization switching, ionic motion, or electrochemical reactions to name a few. The nanoscale size of the biased region is smaller or comparable to features like grain boundaries and dislocations, potentially allows for the study of kinetics and thermodynamics at the level of a single defect. In contrast to classical statistically averaged approaches, this allows one to link structure to functionality and deterministically decipher associated mesoscopic and atomistic mechanisms. Furthermore, this type of information can serve as a fingerprint of local material functionality, allowing for local recognition imaging. Here, current progress in multidimensional SPM techniques based on band-excitation time and voltage spectroscopies is illustrated, including discussions on data acquisition, dimensionality reduction, and visualization along with future challenges and opportunities for the field.

  4. A peptide probe for targeted brown adipose tissue imaging.

    PubMed

    Azhdarinia, Ali; Daquinag, Alexes C; Tseng, Chieh; Ghosh, Sukhen C; Ghosh, Pradip; Amaya-Manzanares, Felipe; Sevick-Muraca, Eva; Kolonin, Mikhail G

    2013-01-01

    The presence of brown adipose tissue responsible for thermogenic energy dissipation has been revealed in adult humans and has high clinical importance. Owing to limitations of current methods for brown adipose tissue detection, analysing the abundance and localization of brown adipose tissue in the body has remained challenging. Here we screen a combinatorial peptide library in mice and characterize a peptide (with the sequence CPATAERPC) that selectively binds to the vascular endothelium of brown adipose tissue, but not of intraperitoneal white adipose tissue. We show that in addition to brown adipose tissue, this peptide probe also recognizes the vasculature of brown adipose tissue-like depots of subcutaneous white adipose tissue. Our results indicate that the CPATAERPC peptide localizes to brown adipose tissue even in the absence of sympathetic nervous system stimulation. Finally, we demonstrate that this probe can be used to identify brown adipose tissue depots in mice by whole-body near-infrared fluorescence imaging.

  5. Development of in situ Imaging Probe for Surgical Operation of Deep Brain Stimulation

    NASA Astrophysics Data System (ADS)

    Noda, Toshihiko; Yi-Li, Pan; Tagawa, Ayato; Kobayashi, Takuma; Sasagawa, Kiyotaka; Tokuda, Takashi; Hatanaka, Yumiko; Nakano, Naoki; Kato, Amami; Shiosaka, Sadao; Ohta, Jun

    A novel clinical medical tool for surgical operation of deep brain stimulation was fabricated and evaluated. Dedicated micro-CMOS image sensor was mounted on the tip of quite fine probe tube. The probe has the same diameter as a probe that is utilized in surgical operation. A light source LED was also mounted on the tip of probe. Imaging trial using a postmortem brain was performed with the fabricated probe. The probe can be inserted into a brain easily and take still images of the brain.

  6. Directional Histogram Ratio at Random Probes: A Local Thresholding Criterion for Capillary Images

    PubMed Central

    Lu, Na; Silva, Jharon; Gu, Yu; Gerber, Scott; Wu, Hulin; Gelbard, Harris; Dewhurst, Stephen; Miao, Hongyu

    2013-01-01

    With the development of micron-scale imaging techniques, capillaries can be conveniently visualized using methods such as two-photon and whole mount microscopy. However, the presence of background staining, leaky vessels and the diffusion of small fluorescent molecules can lead to significant complexity in image analysis and loss of information necessary to accurately quantify vascular metrics. One solution to this problem is the development of accurate thresholding algorithms that reliably distinguish blood vessels from surrounding tissue. Although various thresholding algorithms have been proposed, our results suggest that without appropriate pre- or post-processing, the existing approaches may fail to obtain satisfactory results for capillary images that include areas of contamination. In this study, we propose a novel local thresholding algorithm, called directional histogram ratio at random probes (DHR-RP). This method explicitly considers the geometric features of tube-like objects in conducting image binarization, and has a reliable performance in distinguishing small vessels from either clean or contaminated background. Experimental and simulation studies suggest that our DHR-RP algorithm is superior over existing thresholding methods. PMID:23525856

  7. Determination of tire cross-sectional geometric characteristics from a digitally scanned image

    NASA Technical Reports Server (NTRS)

    Danielson, Kent T.

    1995-01-01

    A semi-automated procedure is described for the accurate determination of geometrical characteristics using a scanned image of the tire cross-section. The procedure can be useful for cases when CAD drawings are not available or when a description of the actual cured tire is desired. Curves representing the perimeter of the tire cross-section are determined by an edge tracing scheme, and the plyline and cord-end positions are determined by locations of color intensities. The procedure provides an accurate description of the perimeter of the tire cross-section and the locations of plylines and cord-ends. The position, normals, and curvatures of the cross-sectional surface are included in this description. The locations of the plylines provide the necessary information for determining the ply thicknesses and relative position to a reference surface. Finally, the locations of the cord-ends provide a means to calculate the cord-ends per inch (epi). Menu driven software has been developed to facilitate the procedure using the commercial code, PV-Wave by Visual Numerics, Inc., to display the images. From a single user interface, separate modules are executed for image enhancement, curve fitting the edge trace of the cross-sectional perimeter, and determining the plyline and cord-end locations. The code can run on SUN or SGI workstations and requires the use of a mouse to specify options or identify items on the scanned image.

  8. Geometrical Calibration of X-Ray Imaging With RGB Cameras for 3D Reconstruction.

    PubMed

    Albiol, Francisco; Corbi, Alberto; Albiol, Alberto

    2016-08-01

    We present a methodology to recover the geometrical calibration of conventional X-ray settings with the help of an ordinary video camera and visible fiducials that are present in the scene. After calibration, equivalent points of interest can be easily identifiable with the help of the epipolar geometry. The same procedure also allows the measurement of real anatomic lengths and angles and obtains accurate 3D locations from image points. Our approach completely eliminates the need for X-ray-opaque reference marks (and necessary supporting frames) which can sometimes be invasive for the patient, occlude the radiographic picture, and end up projected outside the imaging sensor area in oblique protocols. Two possible frameworks are envisioned: a spatially shifting X-ray anode around the patient/object and a moving patient that moves/rotates while the imaging system remains fixed. As a proof of concept, experiences with a device under test (DUT), an anthropomorphic phantom and a real brachytherapy session have been carried out. The results show that it is possible to identify common points with a proper level of accuracy and retrieve three-dimensional locations, lengths and shapes with a millimetric level of precision. The presented approach is simple and compatible with both current and legacy widespread diagnostic X-ray imaging deployments and it can represent a good and inexpensive alternative to other radiological modalities like CT.

  9. Near-infrared dyes for molecular probes and imaging

    NASA Astrophysics Data System (ADS)

    Patonay, Gabor; Beckford, Garfield; Strekowski, Lucjan; Henary, Maged; Kim, Jun Seok; Crow, Sidney

    2009-02-01

    Near-Infrared (NIR) fluorescence has been used both as an analytical tool as molecular probes and in in vitro or in vivo imaging of individual cells and organs. The NIR region (700-1100 nm) is ideal with regard to these applications due to the inherently lower background interference and the high molar absorptivities of NIR chromophores. NIR dyes are also useful in studying binding characteristics of large biomolecules, such as proteins. Throughout these studies, different NIR dyes have been evaluated to determine factors that control binding to biomolecules, including serum albumins. Hydrophobic character of NIR dyes were increased by introducing alkyl and aryl groups, and hydrophilic moieties e.g., polyethylene glycols (PEG) were used to increase aqueous solubility. Recently, our research group introduced bis-cyanines as innovative NIR probes. Depending on their microenvironment, bis-cyanines can exist as an intramolecular dimer with the two cyanines either in a stacked form, or in a linear conformation in which the two subunits do not interact with each other. In this intramolecular H-aggregate, the chromophore has a low extinction coefficient and low fluorescence quantum yield. Upon addition of biomolecules, the H-and D- bands are decreased and the monomeric band is increased, with concomitant increase in fluorescence intensity. Introduction of specific moieties into the NIR dye molecules allows for the development of physiological molecular probes to detect pH, metal ions and other parameters. Examples of these applications include imaging and biomolecule characterizations. Water soluble dyes are expected to be excellent candidates for both in vitro and in vivo imaging of cells and organs.

  10. HIGH-RESOLUTION IMAGING OF THE GEGENSCHEIN AND THE GEOMETRIC ALBEDO OF INTERPLANETARY DUST

    SciTech Connect

    Ishiguro, Masateru; Yang, Hongu; Usui, Fumihiko; Pyo, Jeonghyun; Ueno, Munetaka; Ootsubo, Takafumi; Kwon, Suk Minn; Mukai, Tadashi

    2013-04-10

    We performed optical observations of the Gegenschein using a liquid-nitrogen-cooled wide-field camera, the Wide-field Imager of Zodiacal light with ARray Detector (WIZARD), between 2003 March and 2006 November. We found a narrow brightness enhancement superimposed on the smooth gradient of the Gegenschein at the exact position of the antisolar point. Whereas the Gegenschein morphology changed according to the orbital motion of the Earth, the maximum brightness coincided with the antisolar direction throughout the year. We compared the observed morphology of the Gegenschein with those of models in which the spatial density of the interplanetary dust cloud was considered and found that the volume scattering phase function had a narrow backscattering enhancement. The morphology was reproducible with a spatial distribution model for infrared zodiacal emission. It is likely that the zero-phase peak (the so-called opposition effect) was caused by coherent backscattering and/or shadow-hiding effects on the rough surfaces of individual dust particles. These results suggest that big particles are responsible for both zodiacal light and zodiacal emission. Finally, we derived the geometric albedo of the smooth component of interplanetary dust, assuming big particles, and obtained a geometric albedo of 0.06 {+-} 0.01. The derived albedo is in accordance with collected dark micrometeorites and observed cometary dust particles. We concluded that chondritic particles are dominant near Earth space, supporting the recent theoretical study by dynamical simulation.

  11. Geometric calibration and accuracy assessment of a multispectral imager on UAVs

    NASA Astrophysics Data System (ADS)

    Zheng, Fengjie; Yu, Tao; Chen, Xingfeng; Chen, Jiping; Yuan, Guoti

    2012-11-01

    The increasing developments in Unmanned Aerial Vehicles (UAVs) platforms and associated sensing technologies have widely promoted UAVs remote sensing application. UAVs, especially low-cost UAVs, limit the sensor payload in weight and dimension. Mostly, cameras on UAVs are panoramic, fisheye lens, small-format CCD planar array camera, unknown intrinsic parameters and lens optical distortion will cause serious image aberrations, even leading a few meters or tens of meters errors in ground per pixel. However, the characteristic of high spatial resolution make accurate geolocation more critical to UAV quantitative remote sensing research. A method for MCC4-12F Multispectral Imager designed to load on UAVs has been developed and implemented. Using multi-image space resection algorithm to assess geometric calibration parameters of random position and different photogrammetric altitudes in 3D test field, which is suitable for multispectral cameras. Both theoretical and practical accuracy assessments were selected. The results of theoretical strategy, resolving object space and image point coordinate differences by space intersection, showed that object space RMSE were 0.2 and 0.14 pixels in X direction and in Y direction, image space RMSE were superior to 0.5 pixels. In order to verify the accuracy and reliability of the calibration parameters,practical study was carried out in Tianjin UAV flight experiments, the corrected accuracy validated by ground checkpoints was less than 0.3m. Typical surface reflectance retrieved on the basis of geo-rectified data was compared with ground ASD measurement resulting 4% discrepancy. Hence, the approach presented here was suitable for UAV multispectral imager.

  12. Automated lung field segmentation in CT images using mean shift clustering and geometrical features

    NASA Astrophysics Data System (ADS)

    Chama, Chanukya Krishna; Mukhopadhyay, Sudipta; Biswas, Prabir Kumar; Dhara, Ashis Kumar; Madaiah, Mahendra Kasuvinahally; Khandelwal, Niranjan

    2013-02-01

    Lung field segmentation is a prerequisite for development of automated computer aided diagnosis system from chest computed tomography (CT) scans. Intensity based algorithm such as mean shift (MS) segmentation on CT images for delineation of lung field is reported as the best technique in terms of accuracy and speed in the literature. However, in presence of high dense abnormalities, accurate and automated delineation of lung field becomes difficult. So an improved lung field segmentation using mean shift clustering followed by geometric property based techniques such as lung region of interest (ROI) created from symmetric centroid map of two normal subjects, false positives (FP) reduction module (using eccentricity, solidity, area, centroid features) and false negatives (FN) reduction module (using overlap feature between clusters from MS label map and convex hull of costal lung) is proposed. The performance of the proposed algorithm is validated on images obtained from Lung Image Database Consortium (LIDC) - Image Database Resource Initiative (IDRI) public database of 17 subjects containing nodular patterns and from local database of 26 subjects containing interstitial lung disease (ILD) patterns. The proposed algorithm has achieved mean Modified Hausdorff Distance (MHD) in mm of 1.47 +/- 4.31, Dice Similarity Coefficient (DSC) of 0.9854 +/- 0.0288, sensitivity of 0.9771 +/- 0.0433, specificity of 0.9991 +/- 0.0014 for 133 normal images from 32 subjects and MHD in mm of 6.23 +/- 9.00, DSC of 0.8954 +/- 0.1498, sensitivity of 0.8468 +/- 0.1908, specificity of 0.9969 +/- 0.0061 for 296 abnormal images from 43 subjects.

  13. GUI for Coordinate Measurement of an Image for the Estimation of Geometric Distortion of an Opto-electronic Display System

    NASA Astrophysics Data System (ADS)

    Saini, Surender Singh; Sardana, Harish Kumar; Pattnaik, Shyam Sundar

    2016-07-01

    Conventional image editing software in combination with other techniques are not only difficult to apply to an image but also permits a user to perform some basic functions one at a time. However, image processing algorithms and photogrammetric systems are developed in the recent past for real-time pattern recognition applications. A graphical user interface (GUI) is developed which can perform multiple functions simultaneously for the analysis and estimation of geometric distortion in an image with reference to the corresponding distorted image. The GUI measure, record, and visualize the performance metric of X/Y coordinates of one image over the other. The various keys and icons provided in the utility extracts the coordinates of distortion free reference image and the image with geometric distortion. The error between these two corresponding points gives the measure of distortion and also used to evaluate the correction parameters for image distortion. As the GUI interface minimizes human interference in the process of geometric correction, its execution just requires use of icons and keys provided in the utility; this technique gives swift and accurate results as compared to other conventional methods for the measurement of the X/Y coordinates of an image.

  14. Glycoproteomic probes for fluorescent imaging of fucosylated glycans in vivo

    PubMed Central

    Sawa, Masaaki; Hsu, Tsui-Ling; Itoh, Takeshi; Sugiyama, Masakazu; Hanson, Sarah R.; Vogt, Peter K.; Wong, Chi-Huey

    2006-01-01

    Glycomics is emerging as a new field for the biology of complex glycoproteins and glycoconjugates. The lack of versatile glycan-labeling methods has presented a major obstacle to visualizing at the cellular level and studying glycoconjugates. To address this issue, we developed a fluorescent labeling technique based on the Cu(I)-catalyzed [3 + 2] cycloaddition, or click chemistry, which allows rapid, versatile, and specific covalent labeling of cellular glycans bearing azide groups. The method entails generating a fluorescent probe from a nonfluorescent precursor, 4-ethynyl-N-ethyl-1,8-naphthalimide, by clicking the fluorescent trigger, the alkyne at the 4 position, with an azido-modified sugar. Using this click-activated fluorescent probe, we demonstrate incorporation of an azido-containing fucose analog into glycoproteins via the fucose salvage pathway. Distinct fluorescent signals were observed by flow cytometry when cells treated with 6-azidofucose were labeled with the click-activated fluorogenic probe or biotinylated alkyne. The intracellular localization of fucosylated glycoconjugates was visualized by using fluorescence microscopy. This technique will allow dynamic imaging of cellular fucosylation and facilitate studies of fucosylated glycoproteins and glycolipids. PMID:16895981

  15. The Control Point Library Building System. [for Landsat MSS and RBV geometric image correction

    NASA Technical Reports Server (NTRS)

    Niblack, W.

    1981-01-01

    The Earth Resources Observation System (EROS) Data Center in Sioux Falls, South Dakota distributes precision corrected Landsat MSS and RBV data. These data are derived from master data tapes produced by the Master Data Processor (MDP), NASA's system for computing and applying corrections to the data. Included in the MDP is the Control Point Library Building System (CPLBS), an interactive, menu-driven system which permits a user to build and maintain libraries of control points. The control points are required to achieve the high geometric accuracy desired in the output MSS and RBV data. This paper describes the processing performed by CPLBS, the accuracy of the system, and the host computer and special image viewing equipment employed.

  16. Radiometric, geometric, and image quality assessment of ALOS AVNIR-2 and PRISM sensors

    USGS Publications Warehouse

    Saunier, S.; Goryl, P.; Chander, G.; Santer, R.; Bouvet, M.; Collet, B.; Mambimba, A.; Kocaman, Aksakal S.

    2010-01-01

    The Advanced Land Observing Satellite (ALOS) was launched on January 24, 2006, by a Japan Aerospace Exploration Agency (JAXA) H-IIA launcher. It carries three remote-sensing sensors: 1) the Advanced Visible and Near-Infrared Radiometer type 2 (AVNIR-2); 2) the Panchromatic Remote-Sensing Instrument for Stereo Mapping (PRISM); and 3) the Phased-Array type L-band Synthetic Aperture Radar (PALSAR). Within the framework of ALOS Data European Node, as part of the European Space Agency (ESA), the European Space Research Institute worked alongside JAXA to provide contributions to the ALOS commissioning phase plan. This paper summarizes the strategy that was adopted by ESA to define and implement a data verification plan for missions operated by external agencies; these missions are classified by the ESA as third-party missions. The ESA was supported in the design and execution of this plan by GAEL Consultant. The verification of ALOS optical data from PRISM and AVNIR-2 sensors was initiated 4 months after satellite launch, and a team of principal investigators assembled to provide technical expertise. This paper includes a description of the verification plan and summarizes the methodologies that were used for radiometric, geometric, and image quality assessment. The successful completion of the commissioning phase has led to the sensors being declared fit for operations. The consolidated measurements indicate that the radiometric calibration of the AVNIR-2 sensor is stable and agrees with the Landsat-7 Enhanced Thematic Mapper Plus and the Envisat MEdium-Resolution Imaging Spectrometer calibration. The geometrical accuracy of PRISM and AVNIR-2 products improved significantly and remains under control. The PRISM modulation transfer function is monitored for improved characterization.

  17. Multistep synthesis of a radiolabeled imaging probe using integrated microfluidics.

    PubMed

    Lee, Chung-Cheng; Sui, Guodong; Elizarov, Arkadij; Shu, Chengyi Jenny; Shin, Young-Shik; Dooley, Alek N; Huang, Jiang; Daridon, Antoine; Wyatt, Paul; Stout, David; Kolb, Hartmuth C; Witte, Owen N; Satyamurthy, Nagichettiar; Heath, James R; Phelps, Michael E; Quake, Stephen R; Tseng, Hsian-Rong

    2005-12-16

    Microreactor technology has shown potential for optimizing synthetic efficiency, particularly in preparing sensitive compounds. We achieved the synthesis of an [(18)F]fluoride-radiolabeled molecular imaging probe, 2-deoxy-2-[18F]fluoro-D-glucose ([18F]FDG), in an integrated microfluidic device. Five sequential processes-[18F]fluoride concentration, water evaporation, radiofluorination, solvent exchange, and hydrolytic deprotection-proceeded with high radio-chemical yield and purity and with shorter synthesis time relative to conventional automated synthesis. Multiple doses of [18F]FDG for positron emission tomography imaging studies in mice were prepared. These results, which constitute a proof of principle for automated multistep syntheses at the nanogram to microgram scale, could be generalized to a range of radiolabeled substrates.

  18. Nondestructive millimeter wave imaging and spectroscopy using dielectric focusing probes

    SciTech Connect

    Hejase, Jose A.; Shane, Steven S.; Park, Kyoung Y.; Chahal, Premjeet

    2014-02-18

    A tool for interrogating objects over a wide band of frequencies with subwavelength resolution at small standoff distances (near field region) in the transmission mode using a single source and detector measurement setup in the millimeter wave band is presented. The design utilizes optics like principles for guiding electromagnetic millimeter waves from large cross-sectional areas to considerably smaller sub-wavelength areas. While plano-convex lenses can be used to focus waves to a fine resolution, they usually require a large stand-off distance thus resulting in alignment and spacing issues. The design procedure and simulation analysis of the focusing probes are presented in this study along with experimental verification of performance and imaging and spectroscopy examples. Nondestructive evaluation will find benefit from such an apparatus including biological tissue imaging, electronic package integrity testing, composite dielectric structure evaluation for defects and microfluidic sensing.

  19. Artist: Ken Hodges Composite image explaining Objective and Motivation for Galileo Probe Heat Loads:

    NASA Technical Reports Server (NTRS)

    1981-01-01

    Artist: Ken Hodges Composite image explaining Objective and Motivation for Galileo Probe Heat Loads: Galileo Probe descending into Jupiters Atmosphere shows heat shield separation with parachute deployed. (Ref. JPL P-19180)

  20. Automatic geometric rectification for patient registration in image-guided spinal surgery

    NASA Astrophysics Data System (ADS)

    Cai, Yunliang; Olson, Jonathan D.; Fan, Xiaoyao; Evans, Linton T.; Paulsen, Keith D.; Roberts, David W.; Mirza, Sohail K.; Lollis, S. Scott; Ji, Songbai

    2016-03-01

    Accurate and efficient patient registration is crucial for the success of image-guidance in open spinal surgery. Recently, we have established the feasibility of using intraoperative stereovision (iSV) to perform patient registration with respect to preoperative CT (pCT) in human subjects undergoing spinal surgery. Although a desired accuracy was achieved, the method required manual segmentation and placement of feature points on reconstructed iSV and pCT surfaces. In this study, we present an improved registration pipeline to eliminate these manual operations. Specifically, automatic geometric rectification was performed on spines extracted from pCT and iSV into pose-invariant shapes using a nonlinear principal component analysis (NLPCA). Rectified spines were obtained by projecting the reconstructed 3D surfaces into an anatomically determined orientation. Two-dimensional projection images were then created with image intensity values encoding feature "height" in the dorsal-ventral direction. Registration between the 2D depth maps yielded an initial point-wise correspondence between the 3D surfaces. A refined registration was achieved using an iterative closest point (ICP) algorithm. The technique was successfully applied to two explanted and one live porcine spines. The computational cost of the registration pipeline was less than 1 min, with an average target registration error (TRE) less than 2.2 mm in the laminae area. These results suggest the potential for the pose-invariant, rectification-based registration technique for clinical application in human subjects in the future.

  1. GEOMETRIC TRIANGULATION OF IMAGING OBSERVATIONS TO TRACK CORONAL MASS EJECTIONS CONTINUOUSLY OUT TO 1 AU

    SciTech Connect

    Liu Ying; Luhmann, Janet G.; Bale, Stuart D.; Lin, Robert P.; Davies, Jackie A.; Vourlidas, Angelos

    2010-02-10

    We describe a geometric triangulation technique, based on time-elongation maps constructed from imaging observations, to track coronal mass ejections (CMEs) continuously in the heliosphere and predict their impact on the Earth. Taking advantage of stereoscopic imaging observations from the Solar Terrestrial Relations Observatory, this technique can determine the propagation direction and radial distance of CMEs from their birth in the corona all the way to 1 AU. The efficacy of the method is demonstrated by its application to the 2008 December 12 CME, which manifests as a magnetic cloud (MC) from in situ measurements at the Earth. The predicted arrival time and radial velocity at the Earth are well confirmed by the in situ observations around the MC. Our method reveals non-radial motions and velocity changes of the CME over large distances in the heliosphere. It also associates the flux-rope structure measured in situ with the dark cavity of the CME in imaging observations. Implementation of the technique, which is expected to be a routine possibility in the future, may indicate a substantial advance in CME studies as well as space weather forecasting.

  2. Microfluidics for Positron Emission Tomography (PET) Imaging Probe Development

    PubMed Central

    Wang, Ming-Wei; Lin, Wei-Yu; Liu, Kan; Masterman-Smith, Michael; Shen, Clifton Kwang-Fu

    2012-01-01

    Due to increased needs for Positron Emission Tomography (PET) scanning, high demands for a wide variety of radiolabeled compounds will have to be met by exploiting novel radiochemistry and engineering technologies to improve the production and development of PET probes. The application of microfluidic reactors to perform radiosyntheses is currently attracting a great deal of interest because of their potential to deliver many advantages over conventional labeling systems. Microfluidic-based radiochemistry can lead to the use of smaller quantities of precursors, accelerated reaction rates and easier purification processes with greater yield and higher specific activity of desired probes. Several ‘proof-of-principle’ examples, along with basics of device architecture and operation, and potential limitations of each design are discussed here. Along with the concept of radioisotope distribution from centralized cyclotron facilities to individual imaging centers and laboratories (“decentralized model”), an easy-to-use, standalone, flexible, fully-automated radiochemical microfluidic platform can open up to simpler and more cost-effective procedures for molecular imaging using PET. PMID:20643021

  3. Evaluation of improvement of diffuse optical imaging of brain function by high-density probe arrangements and imaging algorithms

    NASA Astrophysics Data System (ADS)

    Sakakibara, Yusuke; Kurihara, Kazuki; Okada, Eiji

    2016-04-01

    Diffuse optical imaging has been applied to measure the localized hemodynamic responses to brain activation. One of the serious problems with diffuse optical imaging is the limitation of the spatial resolution caused by the sparse probe arrangement and broadened spatial sensitivity profile for each probe pair. High-density probe arrangements and an image reconstruction algorithm considering the broadening of the spatial sensitivity can improve the spatial resolution of the image. In this study, the diffuse optical imaging of the absorption change in the brain is simulated to evaluate the effect of the high-density probe arrangements and imaging methods. The localization error, equivalent full-width half maximum and circularity of the absorption change in the image obtained by the mapping and reconstruction methods from the data measured by five probe arrangements are compared to quantitatively evaluate the imaging methods and probe arrangements. The simple mapping method is sufficient for the density of the measurement points up to the double-density probe arrangement. The image reconstruction method considering the broadening of the spatial sensitivity of the probe pairs can effectively improve the spatial resolution of the image obtained from the probe arrangements higher than the quadruple density, in which the distance between the neighboring measurement points is 10.6 mm.

  4. Analysis of Scanned Probe Images for Magnetic Focusing in Graphene

    NASA Astrophysics Data System (ADS)

    Bhandari, Sagar; Lee, Gil-Ho; Kim, Philip; Westervelt, Robert M.

    2017-02-01

    We have used cooled scanning probe microscopy (SPM) to study electron motion in nanoscale devices. The charged tip of the microscope was raster-scanned at constant height above the surface as the conductance of the device was measured. The image charge scatters electrons away, changing the path of electrons through the sample. Using this technique, we imaged cyclotron orbits that flow between two narrow contacts in the magnetic focusing regime for ballistic hBN-graphene-hBN devices. We present herein an analysis of our magnetic focusing imaging results based on the effects of the tip-created charge density dip on the motion of ballistic electrons. The density dip locally reduces the Fermi energy, creating a force that pushes electrons away from the tip. When the tip is above the cyclotron orbit, electrons are deflected away from the receiving contact, creating an image by reducing the transmission between contacts. The data and our analysis suggest that the graphene edge is rather rough, and electrons scattering off the edge bounce in random directions. However, when the tip is close to the edge, it can enhance transmission by bouncing electrons away from the edge, toward the receiving contact. Our results demonstrate that cooled SPM is a promising tool to investigate the motion of electrons in ballistic graphene devices.

  5. Characterization of system-related geometric distortions in MR images employed in Gamma Knife radiosurgery applications

    NASA Astrophysics Data System (ADS)

    Pappas, E. P.; Seimenis, I.; Moutsatsos, A.; Georgiou, E.; Nomikos, P.; Karaiskos, P.

    2016-10-01

    This work provides characterization of system-related geometric distortions present in MRIs used in Gamma Knife (GK) stereotactic radiosurgery (SRS) treatment planning. A custom-made phantom, compatible with the Leksell stereotactic frame model G and encompassing 947 control points (CPs), was utilized. MR images were obtained with and without the frame, thus allowing discrimination of frame-induced distortions. In the absence of the frame and following compensation for field inhomogeneities, measured average CP disposition owing to gradient nonlinearities was 0.53 mm. In presence of the frame, contrarily, detected distortion was greatly increased (up to about 5 mm) in the vicinity of the frame base due to eddy currents induced in the closed loop of its aluminum material. Frame-related distortion was obliterated at approximately 90 mm from the frame base. Although the region with the maximum observed distortion may not lie within the GK treatable volume, the presence of the frame results in distortion of the order of 1.5 mm at a 7 cm distance from the center of the Leksell space. Additionally, severe distortions observed outside the treatable volume could possibly impinge on the delivery accuracy mainly by adversely affecting the registration process (e.g. the position of the lower part of the N-shaped fiducials used to define the stereotactic space may be miss-registered). Images acquired with a modified version of the frame developed by replacing its front side with an acrylic bar, thus interrupting the closed aluminum loop and reducing the induced eddy currents, were shown to benefit from relatively reduced distortion. System-related distortion was also identified in patient MR images. Using corresponding CT angiography images as a reference, an offset of 1.1 mm was detected for two vessels lying in close proximity to the frame base, while excellent spatial agreement was observed for a vessel far apart from the frame base.

  6. Context Tree-Based Image Contour Coding Using a Geometric Prior.

    PubMed

    Zheng, Amin; Cheung, Gene; Florencio, Dinei

    2017-02-01

    Efficient encoding of object contours in images can facilitate advanced image/video compression techniques, such as shape-adaptive transform coding or motion prediction of arbitrarily shaped pixel blocks. We study the problem of lossless and lossy compression of detected contours in images. Specifically, we first convert a detected object contour into a sequence of directional symbols drawn from a small alphabet. To encode the symbol sequence using arithmetic coding, we compute an optimal variable-length context tree (VCT) T via a maximum a posterior (MAP) formulation to estimate symbols' conditional probabilities. MAP can avoid overfitting given a small training set X of past symbol sequences by identifying a VCT T with high likelihood P(X|T) of observing X given T , using a geometric prior P(T) stating that image contours are more often straight than curvy. For the lossy case, we design fast dynamic programming (DP) algorithms that optimally trade off coding rate of an approximate contour [Formula: see text] given a VCT T with two notions of distortion of [Formula: see text] with respect to the original contour x. To reduce the size of the DP tables, a total suffix tree is derived from a given VCT T for compact table entry indexing, reducing complexity. Experimental results show that for lossless contour coding, our proposed algorithm outperforms state-of-the-art context-based schemes consistently for both small and large training datasets. For lossy contour coding, our algorithms outperform comparable schemes in the literature in rate-distortion performance.

  7. Context Tree-Based Image Contour Coding Using a Geometric Prior

    NASA Astrophysics Data System (ADS)

    Zheng, Amin; Cheung, Gene; Florencio, Dinei

    2017-02-01

    If object contours in images are coded efficiently as side information, then they can facilitate advanced image / video coding techniques, such as graph Fourier transform coding or motion prediction of arbitrarily shaped pixel blocks. In this paper, we study the problem of lossless and lossy compression of detected contours in images. Specifically, we first convert a detected object contour composed of contiguous between-pixel edges to a sequence of directional symbols drawn from a small alphabet. To encode the symbol sequence using arithmetic coding, we compute an optimal variable-length context tree (VCT) $\\mathcal{T}$ via a maximum a posterior (MAP) formulation to estimate symbols' conditional probabilities. MAP prevents us from overfitting given a small training set $\\mathcal{X}$ of past symbol sequences by identifying a VCT $\\mathcal{T}$ that achieves a high likelihood $P(\\mathcal{X}|\\mathcal{T})$ of observing $\\mathcal{X}$ given $\\mathcal{T}$, and a large geometric prior $P(\\mathcal{T})$ stating that image contours are more often straight than curvy. For the lossy case, we design efficient dynamic programming (DP) algorithms that optimally trade off coding rate of an approximate contour $\\hat{\\mathbf{x}}$ given a VCT $\\mathcal{T}$ with two notions of distortion of $\\hat{\\mathbf{x}}$ with respect to the original contour $\\mathbf{x}$. To reduce the size of the DP tables, a total suffix tree is derived from a given VCT $\\mathcal{T}$ for compact table entry indexing, reducing complexity. Experimental results show that for lossless contour coding, our proposed algorithm outperforms state-of-the-art context-based schemes consistently for both small and large training datasets. For lossy contour coding, our algorithms outperform comparable schemes in the literature in rate-distortion performance.

  8. Automated Geometric Model Builder Using Range Image Sensor Data: Final Acquistion

    SciTech Connect

    Diegert, C.; Sackos, J.

    1999-02-01

    This report documents a data collection where we recorded redundant range image data from multiple views of a simple scene, and recorded accurate survey measurements of the same scene. Collecting these data was a focus of the research project Automated Geometric Model Builder Using Range Image Sensor Data (96-0384), supported by Sandia's Laboratory-Directed Research and Development (LDRD) Program during fiscal years 1996, 1997, and 1998. The data described here are available from the authors on CDROM, or electronically over the Internet. Included in this data distribution are Computer-Aided Design (CAD) models we constructed from the survey measurements. The CAD models are compatible with the SolidWorks 98 Plus system, the modern Computer-Aided Design software system that is central to Sandia's DeskTop Engineering Project (DTEP). Integration of our measurements (as built) with the constructive geometry process of the CAD system (as designed) delivers on a vision of the research project. This report on our final data collection will also serve as a final report on the project.

  9. Geometrical Mechanism versus Electronic Mechanism: STM Images for Vacancies at the GaAs(110) Surface.

    NASA Astrophysics Data System (ADS)

    Allen, Roland; Harper, John; Lengel, George; Weimer, Michael

    1998-03-01

    Scanning tunneling microscopy has provided considerable information on vacancies at the GaAs(110) surface. (PRL 72), 836 (1994); 77, 119 (1996);79, 3312 and 3314 (1997). Among many other observed features, it is found that the two nearest neighbors have brightened images, suggesting upward displacements. Recently an alternative interpretation was proposed: The neighbors supposedly rebond to subsurface atoms, but with a rearrangement of the electronic states which more than compensates for the resulting downward displacements. This picture is based on LDA calculations which disagree with one another and with experiment. The most critical prediction of the electronic mechanism, however, is that the brightening of the nearest-neighbor images should disappear as the bias voltage is increased. This prediction has now been disconfirmed: The measured surface profile remains essentially unchanged as \\varepsilon_F-\\varepsilon_CBM is increased from 0.6 to 1.4 eV, indicating that a robust geometrical interpretation is more appropriate than one based solely on electronic effects.

  10. Hopc: a Novel Similarity Metric Based on Geometric Structural Properties for Multi-Modal Remote Sensing Image Matching

    NASA Astrophysics Data System (ADS)

    Ye, Yuanxin; Shen, Li

    2016-06-01

    Automatic matching of multi-modal remote sensing images (e.g., optical, LiDAR, SAR and maps) remains a challenging task in remote sensing image analysis due to significant non-linear radiometric differences between these images. This paper addresses this problem and proposes a novel similarity metric for multi-modal matching using geometric structural properties of images. We first extend the phase congruency model with illumination and contrast invariance, and then use the extended model to build a dense descriptor called the Histogram of Orientated Phase Congruency (HOPC) that captures geometric structure or shape features of images. Finally, HOPC is integrated as the similarity metric to detect tie-points between images by designing a fast template matching scheme. This novel metric aims to represent geometric structural similarities between multi-modal remote sensing datasets and is robust against significant non-linear radiometric changes. HOPC has been evaluated with a variety of multi-modal images including optical, LiDAR, SAR and map data. Experimental results show its superiority to the recent state-of-the-art similarity metrics (e.g., NCC, MI, etc.), and demonstrate its improved matching performance.

  11. Phase contrast imaging X-ray computed tomography: quantitative characterization of human patellar cartilage matrix with topological and geometrical features

    NASA Astrophysics Data System (ADS)

    Nagarajan, Mahesh B.; Coan, Paola; Huber, Markus B.; Diemoz, Paul C.; Wismüller, Axel

    2014-03-01

    Current assessment of cartilage is primarily based on identification of indirect markers such as joint space narrowing and increased subchondral bone density on x-ray images. In this context, phase contrast CT imaging (PCI-CT) has recently emerged as a novel imaging technique that allows a direct examination of chondrocyte patterns and their correlation to osteoarthritis through visualization of cartilage soft tissue. This study investigates the use of topological and geometrical approaches for characterizing chondrocyte patterns in the radial zone of the knee cartilage matrix in the presence and absence of osteoarthritic damage. For this purpose, topological features derived from Minkowski Functionals and geometric features derived from the Scaling Index Method (SIM) were extracted from 842 regions of interest (ROI) annotated on PCI-CT images of healthy and osteoarthritic specimens of human patellar cartilage. The extracted features were then used in a machine learning task involving support vector regression to classify ROIs as healthy or osteoarthritic. Classification performance was evaluated using the area under the receiver operating characteristic (ROC) curve (AUC). The best classification performance was observed with high-dimensional geometrical feature vectors derived from SIM (0.95 ± 0.06) which outperformed all Minkowski Functionals (p < 0.001). These results suggest that such quantitative analysis of chondrocyte patterns in human patellar cartilage matrix involving SIM-derived geometrical features can distinguish between healthy and osteoarthritic tissue with high accuracy.

  12. Red Fluorescent Carbon Nanoparticle-Based Cell Imaging Probe.

    PubMed

    Ali, Haydar; Bhunia, Susanta Kumar; Dalal, Chumki; Jana, Nikhil R

    2016-04-13

    Fluorescent carbon nanoparticle-based probes with tunable visible emission are biocompatible, environment friendly and most suitable for various biomedical applications. However, synthesis of red fluorescent carbon nanoparticles and their transformation into functional nanoparticles are very challenging. Here we report red fluorescent carbon nanoparticle-based nanobioconjugates of <25 nm hydrodynamic size and their application as fluorescent cell labels. Hydrophobic carbon nanoparticles are synthesized via high temperature colloid-chemical approach and transformed into water-soluble functional nanoparticles via coating with amphiphilic polymer followed by covalent linking with desired biomolecules. Following this approach, carbon nanoparticles are functionalized with polyethylene glycol, primary amine, glucose, arginine, histidine, biotin and folic acid. These functional nanoparticles can be excited with blue/green light (i.e., 400-550 nm) to capture their emission spanning from 550 to 750 nm. Arginine and folic acid functionalized nanoparticles have been demonstrated as fluorescent cell labels where blue and green excitation has been used for imaging of labeled cells. The presented method can be extended for the development of carbon nanoparticle-based other bioimaging probes.

  13. Multi-institutional dosimetric and geometric commissioning of image-guided small animal irradiators

    SciTech Connect

    Lindsay, P. E.; Granton, P. V.; Hoof, S. van; Hermans, J.; Gasparini, A.; Jelveh, S.; Clarkson, R.; Kaas, J.; Wittkamper, F.; Sonke, J.-J.; Verhaegen, F.; Jaffray, D. A.

    2014-03-15

    Purpose: To compare the dosimetric and geometric properties of a commercial x-ray based image-guided small animal irradiation system, installed at three institutions and to establish a complete and broadly accessible commissioning procedure. Methods: The system consists of a 225 kVp x-ray tube with fixed field size collimators ranging from 1 to 44 mm equivalent diameter. The x-ray tube is mounted opposite a flat-panel imaging detector, on a C-arm gantry with 360° coplanar rotation. Each institution performed a full commissioning of their system, including half-value layer, absolute dosimetry, relative dosimetry (profiles, percent depth dose, and relative output factors), and characterization of the system geometry and mechanical flex of the x-ray tube and detector. Dosimetric measurements were made using Farmer-type ionization chambers, small volume air and liquid ionization chambers, and radiochromic film. The results between the three institutions were compared. Results: At 225 kVp, with 0.3 mm Cu added filtration, the first half value layer ranged from 0.9 to 1.0 mm Cu. The dose-rate in-air for a 40 × 40 mm{sup 2} field size, at a source-to-axis distance of 30 cm, ranged from 3.5 to 3.9 Gy/min between the three institutions. For field sizes between 2.5 mm diameter and 40 × 40 mm{sup 2}, the differences between percent depth dose curves up to depths of 3.5 cm were between 1% and 4% on average, with the maximum difference being 7%. The profiles agreed very well for fields >5 mm diameter. The relative output factors differed by up to 6% for fields larger than 10 mm diameter, but differed by up to 49% for fields ≤5 mm diameter. The mechanical characteristics of the system (source-to-axis and source-to-detector distances) were consistent between all three institutions. There were substantial differences in the flex of each system. Conclusions: With the exception of the half-value layer, and mechanical properties, there were significant differences between the

  14. Probing Tissue Microstructure with Restriction Spectrum Imaging: Histological and Theoretical Validation

    PubMed Central

    White, Nathan S.; Leergaard, Trygve B.; D’Arceuil, Helen; Bjaalie, Jan G.; Dale, Anders M.

    2012-01-01

    Diffusion magnetic resonance imaging (dMRI) is a powerful tool for studying biological tissue microarchitectures in vivo. Recently, there has been increased effort to develop quantitative dMRI methods to probe both length scale and orientation information in diffusion media. Diffusion spectrum imaging (DSI) is one such approach that aims to resolve such information on the basis of the three-dimensional diffusion propagator at each voxel. However, in practice only the orientation component of the propagator function is preserved when deriving the orientation distribution function. Here, we demonstrate how a straightforward extension of the linear spherical deconvolution (SD) model can be used to probe tissue orientation structures over a range (or “spectrum”) of length scales with minimal assumptions on the underlying microarchitecture. Using high b-value Cartesian q-space data on a fixed rat brain sample, we demonstrate how this “restriction spectrum imaging” (RSI) model allows for separating the volume fraction and orientation distribution of hindered and restricted diffusion, which we argue stems primarily from diffusion in the extra- and intra-neurite water compartment, respectively. Moreover, we demonstrate how empirical RSI estimates of the neurite orientation distribution and volume fraction capture important additional structure not afforded by traditional DSI or fixed-scale SD-like reconstructions, particularly in grey matter. We conclude that incorporating length scale information in geometric models of diffusion offers promise for advancing state-of-the-art dMRI methods beyond white matter into grey matter structures while allowing more detailed quantitative characterization of water compartmentalization and histoarchitecture of healthy and diseased tissue. PMID:23169482

  15. A Dream of a Mission: Stellar Imager and Seismic Probe

    NASA Technical Reports Server (NTRS)

    Carpenter, Kenneth G.; Schrijver, Carolus J.; Fisher, Richard R. (Technical Monitor)

    2000-01-01

    The Stellar Imager and Seismic Probe (SISP) is a mission to understand the various effects of magnetic fields of stars, the dynamos that generate them, and the internal structure and dynamics of the stars in which they exist. The ultimate goal is to achieve the best-possible forecasting of solar activity on times scales ranging up to decades, and an understanding of the impact of stellar magnetic activity on astrobiology and life in the Universe. The road to that goal will revolutionize our understanding of stars and stellar systems, the building blocks of the Universe. SISP will zoom in on what today - with few exceptions - we only know as point sources, revealing processes never before seen, thus providing a tool to astrophysics as fundamental as the microscope is to the study of life on Earth. SISP is an ultraviolet aperture-synthesis imager with 8-10 telescopes with meter-class apertures, and a central hub with focal-plane instrumentation that allows spectrophotometry in passbands as narrow as a few Angstroms up to hundreds of Angstroms. SISP will image stars and binaries with one hundred to one thousand resolution elements on their surface, and sound their interiors through asteroseismology to image internal structure, differential rotation, and large-scale circulations; this will provide accurate knowledge of stellar structure and evolution and complex transport processes, and will impact numerous branches of (astro)physics ranging from the Big Bang to the future of the Universe. Fitting naturally within the NASA long-term time line, SISP complements defined missions, and with them will show us entire other solar systems, from the central star to their orbiting planets.

  16. Molecular Probes for Imaging the Sigma-2 Receptor: In Vitro and In Vivo Imaging Studies.

    PubMed

    Zeng, Chenbo; McDonald, Elizabeth S; Mach, Robert H

    2017-02-08

    The sigma-2 (σ2) receptor has been validated as a biomarker of the proliferative status of solid tumors. Therefore, radiotracers having a high affinity and high selectivity for σ2 receptors have the potential to assess the proliferative status of human tumors using noninvasive imaging techniques such as Positron Emission Tomography (PET). Since the σ2 receptor has not been cloned, the current knowledge of this receptor has relied on receptor binding studies with the radiolabeled probes and investigation of the effects of the σ2 receptor ligands on tumor cells. The development of the σ2 selective fluorescent probes has proven to be useful for studying subcellular localization and biological functions of the σ2 receptor, for revealing pharmacological properties of the σ2 receptor ligands, and for imaging cell proliferation. Preliminary clinical imaging studies with [(18)F]ISO-1, a σ2 receptor probe, have shown promising results in cancer patients. However, the full utility of imaging the σ2 receptor status of solid tumors in the diagnosis and prediction of cancer therapeutic response will rely on elucidation of the functional role of this protein in normal and tumor cell biology.

  17. Observation of Geometric Parametric Instability Induced by the Periodic Spatial Self-Imaging of Multimode Waves

    NASA Astrophysics Data System (ADS)

    Krupa, Katarzyna; Tonello, Alessandro; Barthélémy, Alain; Couderc, Vincent; Shalaby, Badr Mohamed; Bendahmane, Abdelkrim; Millot, Guy; Wabnitz, Stefan

    2016-05-01

    Spatiotemporal mode coupling in highly multimode physical systems permits new routes for exploring complex instabilities and forming coherent wave structures. We present here the first experimental demonstration of multiple geometric parametric instability sidebands, generated in the frequency domain through resonant space-time coupling, owing to the natural periodic spatial self-imaging of a multimode quasi-continuous-wave beam in a standard graded-index multimode fiber. The input beam was launched in the fiber by means of an amplified microchip laser emitting sub-ns pulses at 1064 nm. The experimentally observed frequency spacing among sidebands agrees well with analytical predictions and numerical simulations. The first-order peaks are located at the considerably large detuning of 123.5 THz from the pump. These results open the remarkable possibility to convert a near-infrared laser directly into a broad spectral range spanning visible and infrared wavelengths, by means of a single resonant parametric nonlinear effect occurring in the normal dispersion regime. As further evidence of our strong space-time coupling regime, we observed the striking effect that all of the different sideband peaks were carried by a well-defined and stable bell-shaped spatial profile.

  18. Landsat D Thematic Mapper image dimensionality reduction and geometric correction accuracy

    NASA Technical Reports Server (NTRS)

    Ford, G. E.

    1986-01-01

    To characterize and quantify the performance of the Landsat thematic mapper (TM), techniques for dimensionality reduction by linear transformation have been studied and evaluated and the accuracy of the correction of geometric errors in TM images analyzed. Theoretical evaluations and comparisons for existing methods for the design of linear transformation for dimensionality reduction are presented. These methods include the discrete Karhunen Loeve (KL) expansion, Multiple Discriminant Analysis (MDA), Thematic Mapper (TM)-Tasseled Cap Linear Transformation and Singular Value Decomposition (SVD). A unified approach to these design problems is presented in which each method involves optimizing an objective function with respect to the linear transformation matrix. From these studies, four modified methods are proposed. They are referred to as the Space Variant Linear Transformation, the KL Transform-MDA hybrid method, and the First and Second Version of the Weighted MDA method. The modifications involve the assignment of weights to classes to achieve improvements in the class conditional probability of error for classes with high weights. Experimental evaluations of the existing and proposed methods have been performed using the six reflective bands of the TM data. It is shown that in terms of probability of classification error and the percentage of the cumulative eigenvalues, the six reflective bands of the TM data require only a three dimensional feature space. It is shown experimentally as well that for the proposed methods, the classes with high weights have improvements in class conditional probability of error estimates as expected.

  19. Compact probing system using remote imaging for industrial plant maintenance

    NASA Astrophysics Data System (ADS)

    Ito, F.; Nishimura, A.

    2014-03-01

    Laser induced breakdown spectroscopy (LIBS) and endoscope observation were combined to design a remote probing device. We use this probing device to inspect a crack of the inner wall of the heat exchanger. Crack inspection requires speed at first, and then it requires accuracy. Once Eddy Current Testing (ECT) finds a crack with a certain signal level, another method should confirm it visually. We are proposing Magnetic particle Testing (MT) using specially fabricated the Magnetic Particle Micro Capsule (MPMC). For LIBS, a multichannel spectrometer and a Q-switch YAG laser were used. Irradiation area is 270 μm, and the pulse energy was 2 mJ. This pulse energy corresponds to 5-2.2 MW/cm2. A composite-type optical fiber was used to deliver both laser energy and optical image. Samples were prepared to heat a zirconium alloy plate by underwater arc welding in order to demonstrate severe accidents of nuclear power plants. A black oxide layer covered the weld surface and white particles floated on water surface. Laser induced breakdown plasma emission was taken into the spectroscope using this optical fiber combined with telescopic optics. As a result, we were able to simultaneously perform spectroscopic measurement and observation. For MT, the MPMC which gathered in the defective area is observed with this fiber. The MPMC emits light by the illumination of UV light from this optical fiber. The size of a defect is estimated with this amount of emission. Such technology will be useful for inspection repair of reactor pipe.

  20. Evanescent Microwave Probes Using Coplanar Waveguide and Stripline for Super-Resolution Imaging of Materials

    NASA Technical Reports Server (NTRS)

    Ponchak, G. E.; Akinwande, D.; Ciocan, R.; LeClair, S. R.; Tabib-Azar, M.

    2000-01-01

    An evanescent field microwave imaging probe based on half-wavelength, microwave transmission line resonators is described. Optimization of the probe tip design, the coupling gap, and the data analysis has resulted in images of metal lines on semiconductor substrates with 2.6 microns spatial resolution and a minimum detectable line width of 0.4 microns at 1 GHz.

  1. Reaction-based two-photon probes for mercury ions: fluorescence imaging with dual optical windows.

    PubMed

    Rao, Alla Sreenivasa; Kim, Dokyoung; Wang, Taejun; Kim, Ki Hean; Hwang, Sekyu; Ahn, Kyo Han

    2012-05-18

    For fluorescent imaging of mercury ions in living species, two-photon probes with dual optical windows are in high demand but remain unexplored. Several dithioacetals were evaluated, and a probe was found, which, upon reaction with mercury species, yielded a two-photon dye; this conversion accompanies ratiometric emission changes with a 97-nm shift, enabling fluorescent imaging of both the probe and mercury ions in cells by one- and two-photon microscopy for the first time.

  2. Multispectral photoacoustic imaging of tumours in mice injected with an enzyme-activatable photoacoustic probe

    NASA Astrophysics Data System (ADS)

    Hirasawa, Takeshi; Iwatate, Ryu J.; Kamiya, Mako; Okawa, Shinpei; Urano, Yasuteru; Ishihara, Miya

    2017-01-01

    Photoacoustic (PA) imaging offers depth-resolved images of optical absorbers with the spatial resolution of ultrasound imaging. To enhance tumour contrast, tumour-specific probes are used as contrast agents. We synthesised a colourless PA probe that is activated in the presence of γ-glutamyltranspeptidase, a cancer-associated enzyme, to show its original colour and fluorescence. We have acquired high specificity fluorescence images of small tumours, using a fluorescent probe based on similar enzymatic reactions. Here, we developed a PA imaging technique to detect the PA probe. In PA imaging, depending on the concentration and excitation wavelength of the probe, the intensities of the probe signals may be lower than those of the background signals produced by intrinsic optical absorbers such as haemoglobin. For probe imaging in the presence of strong background signals, multispectral photoacoustic (MS-PA) imaging was evaluated. In MS-PA imaging, the spectral fitting method, which distinguishes the probe signals from background signals using reference spectra, has been widely used. To compensate for the decrease of fluence due to optical attenuation in biological tissue, we used a simplified compensation method that calculates fluence inside biological tissues by the Monte-Carlo model using published data on optical properties of biological tissues. The validity of the method was confirmed using tissue-mimicking phantoms. Finally, MS-PA imaging of a mouse subcutaneous tumour injected with the activatable probe was demonstrated. In conclusion, our MS-PA imaging technique afforded successful detection of the activated probe in the tumour, and time-increase of PA signals were successfully observed.

  3. High-efficiency FRET-enhanced photoacoustic probes for in vivo tumor imaging

    NASA Astrophysics Data System (ADS)

    Qin, Huan; Liu, Liming

    2017-01-01

    Photoacoustic imaging can provide high-resolution and high-contrast image under unprecedented depth compared with pure optical imaging techniques by making use of laser-induced ultrasound waves. Although a series of absorption-enhanced optical contrast agents for photoacoustic imaging were developed, the probe with fully conversion from absorbed light energy to acoustic energy has not been achieved so far. Here we develop a high-efficiency photoacoustic probes with fluorescence resonance energy transfer (FRET) effect for enhancement of nonradiative energy. Graphene oxide (GO) binding optical dyes (GO-dyes) were achieved to show highly fluorescence quenching and violently increased photoacoustic signal intensity. GO-dyes were constructed and testified for multi-spectral photoacoustic imaging. As a representative probe, GO-Cy7 nanoparticles were used to validate the feasibility of photoacoustic tumor molecular imaging in vivo. Our work demonstrated a new approach to construct high-efficiency FRET-enhanced multi-spectrum probes for photoacoustic molecular imaging.

  4. Symmetric geometric transfer matrix partial volume correction for PET imaging: principle, validation and robustness

    NASA Astrophysics Data System (ADS)

    Sattarivand, Mike; Kusano, Maggie; Poon, Ian; Caldwell, Curtis

    2012-11-01

    Limited spatial resolution of positron emission tomography (PET) often requires partial volume correction (PVC) to improve the accuracy of quantitative PET studies. Conventional region-based PVC methods use co-registered high resolution anatomical images (e.g. computed tomography (CT) or magnetic resonance images) to identify regions of interest. Spill-over between regions is accounted for by calculating regional spread functions (RSFs) in a geometric transfer matrix (GTM) framework. This paper describes a new analytically derived symmetric GTM (sGTM) method that relies on spill-over between RSFs rather than between regions. It is shown that the sGTM is mathematically equivalent to Labbe's method; however it is a region-based method rather than a voxel-based method and it avoids handling large matrices. The sGTM method was validated using two three-dimensional (3D) digital phantoms and one physical phantom. A 3D digital sphere phantom with sphere diameters ranging from 5 to 30 mm and a sphere-to-background uptake ratio of 3-to-1 was used. A 3D digital brain phantom was used with four different anatomical regions and a background region with different activities assigned to each region. A physical sphere phantom with the same geometry and uptake as the digital sphere phantom was manufactured and PET-CT images were acquired. Using these three phantoms, the performance of the sGTM method was assessed against that of the GTM method in terms of accuracy, precision, noise propagation and robustness. The robustness was assessed by applying mis-registration errors and errors in estimates of PET point spread function (PSF). In all three phantoms, the results showed that the sGTM method has accuracy similar to that of the GTM method and within 5%. However, the sGTM method showed better precision and noise propagation than the GTM method, especially for spheres smaller than 13 mm. Moreover, the sGTM method was more robust than the GTM method when mis-registration errors or

  5. Co-Encapsulating the Fusogenic Peptide INF7 and Molecular Imaging Probes in Liposomes Increases Intracellular Signal and Probe Retention

    PubMed Central

    Martin, Erik W.; Li, Changqing; Lu, Wuyuan; Kao, Joseph P. Y.

    2015-01-01

    Liposomes are promising vehicles to deliver diagnostic and therapeutic agents to cells in vivo. After uptake into cells by endocytosis, liposomes are degraded in the endolysosomal system. Consequently, the encapsulated cargo molecules frequently remain sequestered in endosomal compartments; this limits their usefulness in many applications (e.g. gene delivery). To overcome this, various fusogenic peptides have been developed to facilitate delivery of liposomally-encapsulated molecules into the cytosol. One such peptide is the pH-sensitive influenza-derived peptide INF7. Liposomal delivery of imaging agents is an attractive approach for enabling cell imaging and cell tracking in vivo, but can be hampered by inadequate intracellular accumulation and retention of probes caused by exocytosis (and possible degradation) of endosome-entrapped probes. Such signal loss could be minimized by facilitating escape of probe molecules from endolysosomal compartments into the cytosol. We investigated the ability of co-encapsulated INF7 to release liposomally-delivered rhodamine fluorophores into the cytosol after endosomal acidification/maturation. We co-encapsulated INF7 and fluorescent rhodamine derivatives having vastly different transport properties to show that after endocytosis by CV1 cells, the INF7 peptide is activated by acidic endosomal pH and facilitates efficient release of the fluorescent tracers into the cytosol. Furthermore, we show that INF7-facilitated escape from endosomes markedly enhanced retention of tracers that cannot be actively extruded from the cytosol. Minimizing loss of intracellular probes improves cellular imaging by increasing the signal-to-noise ratio of images and lengthening the time window that imaging can be performed. In particular, this will enhance in vivo electron paramagnetic resonance imaging, an emergent magnetic resonance imaging modality requires exogenous paramagnetic imaging agents and is highly promising for cellular and molecular

  6. Precise geometric correction for NOAA and GMS images considering elevation effects using GCP template matching and affine transform

    NASA Astrophysics Data System (ADS)

    Takagi, Mikio

    2004-02-01

    This paper describes a precise geometric correction method considering elevation effects for NOAA/AVHRR of GMS images, which is mandatory for long-term global environmental monitoring studies. First, using the so-called systematic geometric correction, the correspondences of sub-sampled image pixels to their map coordinates are calculated. And, the correspondences of sub-sampled map locations, which are the corner points of blocks, to image pixels are calculated to speed up the inverse transform to find for a pixel on the map coordinates to the corresponding pixel in the image coordinates using the bilinear interpolation of the four corner points of a block. For precise geometric correction, the residual errors of the systematic correction are measured using many GCP templates. GCP templates in the map coordinates are provide using DCW. Templates in the image coordinates are generated using the bilinear Interpolation. Also, the templates of high elevation areas are modified to include the elevation effects, using the height from GTOPO30 and satellite sensor geometry. Then, the residual errors are acquired by template matching and affine transform coefficients are calculated to remove the residual errors. And if the difference between the average error and each GCP is more than one pixel, these GCP"s are removed and new affine transform coefficients are recalculated iteratively until all errors reach within one pixel. Then, mapping of each pixel is done using the correspondence of four corner block points and image coordinates modified by affine transform, but for high elevation areas blocks are divided into pixels according to their elevation. The accuracy of within one pixel; i.e. 0.01 degree for NOAA/AVHRR and GMS/VIS and 0.04 degrees for GMS/IR is obtained for NOAA images received at Tokyo and the stitched ones received at Tokyo and Bangkok and also GMS full disk images.

  7. An intracellularly activatable, fluorogenic probe for cancer imaging.

    PubMed

    Tian, Ruisong; Li, Mingjie; Wang, Jin; Yu, Min; Kong, Xiuqi; Feng, Yupeng; Chen, Zeming; Li, Yuxi; Huang, Weiqiang; Wu, Wenjie; Hong, Zhangyong

    2014-08-07

    A newly designed, dual-functional probe based on intracellular activation has been successfully developed for the detection of cancer cells. The probe is nearly non-fluorescent in buffer due to its highly efficient FRET quenching, but it can be specifically activated with dramatic fluorescence enhancement upon intracellular cathepsin B cleavage in target cancer cells after selective internalization via folate receptor-dependent endocytosis. Therefore, this probe enables "turn-on" visualization of cancer cells with desirable specificity and contrast enhancement. This targeted, intracellularly activatable probe exhibits low fluorescence-quenched background when compared with "always-on" probes and avoids non-specific activation by non-specifically expressed enzymes in normal tissue, which normally occurs when using common "turn on" probe design strategies. Therefore, this probe can be potentially applied in intraoperative inspection during clinical cancer surgery with higher contrast and sensitivity.

  8. Dedicated mobile high resolution prostate PET imager with an insertable transrectal probe

    DOEpatents

    Majewski, Stanislaw; Proffitt, James

    2010-12-28

    A dedicated mobile PET imaging system to image the prostate and surrounding organs. The imaging system includes an outside high resolution PET imager placed close to the patient's torso and an insertable and compact transrectal probe that is placed in close proximity to the prostate and operates in conjunction with the outside imager. The two detector systems are spatially co-registered to each other. The outside imager is mounted on an open rotating gantry to provide torso-wide 3D images of the prostate and surrounding tissue and organs. The insertable probe provides closer imaging, high sensitivity, and very high resolution predominately 2D view of the prostate and immediate surroundings. The probe is operated in conjunction with the outside imager and a fast data acquisition system to provide very high resolution reconstruction of the prostate and surrounding tissue and organs.

  9. High speed 3D endoscopic optical frequency domain imaging probe for lung cancer diagnosis

    NASA Astrophysics Data System (ADS)

    Li, Jianan; Feroldi, Fabio; Mo, Jianhua; Helderman, Frank; de Groot, Mattijs; de Boer, Johannes F.

    2013-06-01

    We present a miniature motorized endoscopic probe for Optical Frequency Domain Imaging with an outer diameter of 1.65 mm and a rotation speed of 3,000 - 12,500 rpm. The probe has a motorized distal end which provides a significant advantage over proximally driven probes since it does not require a drive shaft to transfer the rotational torque to the distal end of the probe and functions without a fiber rotary junction. The probe has a focal Full Width at Half Maximum of 9.6 μm and a working distance of 0.47 mm. We analyzed the non-uniform rotation distortion and found a location fluctuation of only 1.87° in repeated measurements of the same object. The probe was integrated in a high-speed Optical Frequency Domain Imaging setup at 1310 nm. We demonstrated its performance with imaging ex vivo pig bronchial and in vivo goat lung.

  10. Esophagogastric junction distensibility assessed using the functional lumen imaging probe

    PubMed Central

    Chen, Joan W; Rubenstein, Joel H

    2017-01-01

    AIM To assess reference values in the literature for esophageal distensibility and cross-sectional area in healthy and diseased subjects measured by the functional lumen imaging probe (FLIP). METHODS Systematic search and review of articles in Medline and Embase pertaining to the use of FLIP in the esophagus was conducted in accordance with the PRISMA guidelines. Cross-sectional area and distensibility at the esophagogastric junction (EGJ) were abstracted for normal subjects, achalasia, and gastroesophageal reflux disease (GERD) patients, stratified by balloon length and volume of inflation. RESULTS Six achalasia studies (n = 154), 3 GERD (n = 52), and 5 studies including healthy controls (n = 98) were included in the systematic review. Normative data varied widely amongst studies of healthy volunteers. In contrast, studies in achalasia patients uniformly demonstrated low point estimates in distensibility ≤ 1.6 mm2/mmHg prior to treatment that increased to ≥ 3.4 mm2/mmHg following treatment at 40mL bag volume. In GERD patients, distensibility fell to the range of untreated achalasia (≤ 2.85 mm2/mmHg) following fundoplication. CONCLUSION FLIP may be a useful tool in assessment of treatment efficacy in achalasia. The drastic drop in EGJ distensibility after fundoplication suggests that FLIP measurements need to be interpreted in the context of esophageal body motility and highlights the importance of pre-operative screening for dysmotility. Future studies using standardized FLIP protocol and balloon size are needed. PMID:28275309

  11. Probing Field-Induced Tissue Polarization Using Transillumination Fluorescent Imaging

    PubMed Central

    Caldwell, Bryan J.; Wellner, Marcel; Mitrea, Bogdan G.; Pertsov, Arkady M.; Zemlin, Christian W.

    2010-01-01

    Despite major successes of biophysical theories in predicting the effects of electrical shocks within the heart, recent optical mapping studies have revealed two major discrepancies between theory and experiment: 1), the presence of negative bulk polarization recorded during strong shocks; and 2), the unexpectedly small surface polarization under shock electrodes. There is little consensus as to whether these differences result from deficiencies of experimental techniques, artifacts of tissue damage, or deficiencies of existing theories. Here, we take advantage of recently developed near-infrared voltage-sensitive dyes and transillumination optical imaging to perform, for the first time that we know of, noninvasive probing of field effects deep inside the intact ventricular wall. This technique removes some of the limitations encountered in previous experimental studies. We explicitly demonstrate that deep inside intact myocardial tissue preparations, strong electrical shocks do produce considerable negative bulk polarization previously inferred from surface recordings. We also demonstrate that near-threshold diastolic field stimulation produces activation of deep myocardial layers 2–6 mm away from the cathodal surface, contrary to theory. Using bidomain simulations we explore factors that may improve the agreement between theory and experiment. We show that the inclusion of negative asymmetric current can qualitatively explain negative bulk polarization in a discontinuous bidomain model. PMID:20923639

  12. Advanced Magnetic Resonance Imaging techniques to probe muscle structure and function

    NASA Astrophysics Data System (ADS)

    Malis, Vadim

    Structural and functional Magnetic Resonance Imaging (MRI) studies of skeletal muscle allow the elucidation of muscle physiology under normal and pathological conditions. Continuing on the efforts of the Muscle Imaging and Modeling laboratory, the focus of the thesis is to (i) extend and refine two challenging imaging modalities: structural imaging using Diffusion Tensor Imaging (DTI) and functional imaging based on Velocity Encoded Phase Contrast Imaging (VE-PC) and (ii) apply these methods to explore age related structure and functional differences of the gastrocnemius muscle. Diffusion Tensor Imaging allows the study of tissue microstructure as well as muscle fiber architecture. The images, based on an ultrafast single shot Echo Planar Imaging (EPI) sequence, suffer from geometric distortions and low signal to noise ratio. A processing pipeline was developed to correct for distortions and to improve image Signal to Noise Ratio (SNR). DTI acquired on a senior and young cohort of subjects were processed through the pipeline and differences in DTI derived indices and fiber architecture between the two cohorts were explored. The DTI indices indicated that at the microstructural level, fiber atrophy was accompanied with a reduction in fiber volume fraction. At the fiber architecture level, fiber length and pennation angles decreased with age that potentially contribute to the loss of muscle force with age. Velocity Encoded Phase Contrast imaging provides tissue (e.g. muscle) velocity at each voxel which allows the study of strain and Strain Rate (SR) under dynamic conditions. The focus of the thesis was to extract 2D strain rate tensor maps from the velocity images and apply the method to study age related differences. The tensor mapping can potentially provide unique information on the extracellular matrix and lateral transmission the role of these two elements has recently emerged as important determinants of force loss with age. In the cross sectional study on

  13. Optical imaging of reporter gene expression using a positron-emission-tomography probe

    NASA Astrophysics Data System (ADS)

    Liu, Hongguang; Ren, Gang; Liu, Shuanglong; Zhang, Xiaofen; Chen, Luxi; Han, Peizhen; Cheng, Zhen

    2010-11-01

    Reporter gene/reporter probe technology is one of the most important techniques in molecular imaging. Lately, many reporter gene/reporter probe systems have been coupled to different imaging modalities such as positron emission tomography (PET) and optical imaging (OI). It has been recently found that OI techniques could be used to monitor radioactive tracers in vitro and in living subjects. In this study, we further demonstrate that a reporter gene/nuclear reporter probe system [herpes simplex virus type-1 thymidine kinase (HSV1-tk) and 9-(4-18F-fluoro-3-[hydroxymethyl] butyl) guanine ([18F]FHBG)] could be successfully imaged by OI in vitro and in vivo. OI with radioactive reporter probes will facilitate and broaden the applications of reporter gene/reporter probe techniques in medical research.

  14. Geometric registration of images by similarity transformation using two reference points

    NASA Technical Reports Server (NTRS)

    Kang, Yong Q. (Inventor); Jo, Young-Heon (Inventor); Yan, Xiao-Hai (Inventor)

    2011-01-01

    A method for registering a first image to a second image using a similarity transformation. The each image includes a plurality of pixels. The first image pixels are mapped to a set of first image coordinates and the second image pixels are mapped to a set of second image coordinates. The first image coordinates of two reference points in the first image are determined. The second image coordinates of these reference points in the second image are determined. A Cartesian translation of the set of second image coordinates is performed such that the second image coordinates of the first reference point match its first image coordinates. A similarity transformation of the translated set of second image coordinates is performed. This transformation scales and rotates the second image coordinates about the first reference point such that the second image coordinates of the second reference point match its first image coordinates.

  15. A probabilistic approach to segmentation and classification of neoplasia in uterine cervix images using color and geometric features

    NASA Astrophysics Data System (ADS)

    Srinivasan, Yeshwanth; Hernes, Dana; Tulpule, Bhakti; Yang, Shuyu; Guo, Jiangling; Mitra, Sunanda; Yagneswaran, Sriraja; Nutter, Brian; Jeronimo, Jose; Phillips, Benny; Long, Rodney; Ferris, Daron

    2005-04-01

    Automated segmentation and classification of diagnostic markers in medical imagery are challenging tasks. Numerous algorithms for segmentation and classification based on statistical approaches of varying complexity are found in the literature. However, the design of an efficient and automated algorithm for precise classification of desired diagnostic markers is extremely image-specific. The National Library of Medicine (NLM), in collaboration with the National Cancer Institute (NCI), is creating an archive of 60,000 digitized color images of the uterine cervix. NLM is developing tools for the analysis and dissemination of these images over the Web for the study of visual features correlated with precancerous neoplasia and cancer. To enable indexing of images of the cervix, it is essential to develop algorithms for the segmentation of regions of interest, such as acetowhitened regions, and automatic identification and classification of regions exhibiting mosaicism and punctation. Success of such algorithms depends, primarily, on the selection of relevant features representing the region of interest. We present color and geometric features based statistical classification and segmentation algorithms yielding excellent identification of the regions of interest. The distinct classification of the mosaic regions from the non-mosaic ones has been obtained by clustering multiple geometric and color features of the segmented sections using various morphological and statistical approaches. Such automated classification methodologies will facilitate content-based image retrieval from the digital archive of uterine cervix and have the potential of developing an image based screening tool for cervical cancer.

  16. The necessity of exterior orientation parameters for the rigorous geometric correction of MEIS-II airborne digital images

    SciTech Connect

    Bannari, A.; Morin, D.; Gibson, J.R.

    1996-11-01

    The Canada Land Use Monitoring Program is attempting to replace aerial photographs by remote sensing imagery (satellite or airborne). The Canada Center for Remote Sensing (CCRS) is implementing an airborne multi-detector electro-optical imaging system (MEIS-II). The acceptance of airborne scanners has been slow principally due to poor spatial resolution and distortions induced by aircraft motion. To address this geometric problem, CCRS has developed a rigorous correction method based on fundamental photogrammetric principles (collinearity and coplanarity) and auxiliary navigation data (attitude, altitude and aircraft speed) measured in relation to time by an inertial navigation system (INS). The method can process images in monoscopy or stereoscopy. It uses primarily a low-order polynomial function for correcting auxiliary data based on the method of least squares and a few control points. The results are then used in the geometric correction procedure. In this study, we discuss the effect of geometric distortions caused by aircraft motion and we test two geometric correction methods. The first method is the one developed by CCRS mentioned above. The second method is based on a second order polynomial function. The effect of control point precision on the reliability of the geometric correction using geodetic points and other points derived from the 1/20 000 topographical map is examined. The results show a noticeable difference between the two approaches tested. The photogrammetric method, based on the condition of collinearity and coplanarity, and related to navigation data, results in precision in the order of one pixel with geodetic control points. The use of geodetic control points permits the elimination of the planimetric error characteristic of the topographical map. The polynomial method provides precision which is in the order of five pixels whatever the type and precision of the control points. 18 refs., 6 figs., 2 tabs.

  17. All-optical photoacoustic imaging system using fiber ultrasound probe and hollow optical fiber bundle.

    PubMed

    Miida, Yusuke; Matsuura, Yuji

    2013-09-23

    An all-optical 3D photoacoustic imaging probe that consists of an optical fiber probe for ultrasound detection and a bundle of hollow optical fibers for excitation of photoacoustic waves was developed. The fiber probe for ultrasound is based on a single-mode optical fiber with a thin polymer film attached to the output end surface that works as a Fabry Perot etalon. The input end of the hollow fiber bundle is aligned so that each fiber in the bundle is sequentially excited. A thin and flexible probe can be obtained because the probe system does not have a scanning mechanism at the distal end.

  18. Sparse sampling and reconstruction for electron and scanning probe microscope imaging

    DOEpatents

    Anderson, Hyrum; Helms, Jovana; Wheeler, Jason W.; Larson, Kurt W.; Rohrer, Brandon R.

    2015-07-28

    Systems and methods for conducting electron or scanning probe microscopy are provided herein. In a general embodiment, the systems and methods for conducting electron or scanning probe microscopy with an undersampled data set include: driving an electron beam or probe to scan across a sample and visit a subset of pixel locations of the sample that are randomly or pseudo-randomly designated; determining actual pixel locations on the sample that are visited by the electron beam or probe; and processing data collected by detectors from the visits of the electron beam or probe at the actual pixel locations and recovering a reconstructed image of the sample.

  19. Portable LED-induced autofluorescence imager with a probe of L shape for oral cancer diagnosis

    NASA Astrophysics Data System (ADS)

    Huang, Ting-Wei; Lee, Yu-Cheng; Cheng, Nai-Lun; Yan, Yung-Jhe; Chiang, Hou-Chi; Chiou, Jin-Chern; Mang, Ou-Yang

    2015-08-01

    The difference of spectral distribution between lesions of epithelial cells and normal cells after excited fluorescence is one of methods for the cancer diagnosis. In our previous work, we developed a portable LED Induced autofluorescence (LIAF) imager contained the multiple wavelength of LED excitation light and multiple filters to capture ex-vivo oral tissue autofluorescence images. Our portable system for detection of oral cancer has a probe in front of the lens for fixing the object distance. The shape of the probe is cone, and it is not convenient for doctor to capture the oral image under an appropriate view angle in front of the probe. Therefore, a probe of L shape containing a mirror is proposed for doctors to capture the images with the right angles, and the subjects do not need to open their mouse constrainedly. Besides, a glass plate is placed in probe to prevent the liquid entering in the body, but the light reflected from the glass plate directly causes the light spots inside the images. We set the glass plate in front of LED to avoiding the light spots. When the distance between the glasses plate and the LED model plane is less than the critical value, then we can prevent the light spots caused from the glasses plate. The experiments show that the image captured with the new probe that the glasses plate placed in the back-end of the probe has no light spots inside the image.

  20. Optic probe for multiple angle image capture and optional stereo imaging

    DOEpatents

    Malone, Robert M.; Kaufman, Morris I.

    2016-11-29

    A probe including a multiple lens array is disclosed to measure velocity distribution of a moving surface along many lines of sight. Laser light, directed to the moving surface is reflected back from the surface and is Doppler shifted, collected into the array, and then directed to detection equipment through optic fibers. The received light is mixed with reference laser light and using photonic Doppler velocimetry, a continuous time record of the surface movement is obtained. An array of single-mode optical fibers provides an optic signal to the multiple lens array. Numerous fibers in a fiber array project numerous rays to establish many measurement points at numerous different locations. One or more lens groups may be replaced with imaging lenses so a stereo image of the moving surface can be recorded. Imaging a portion of the surface during initial travel can determine whether the surface is breaking up.

  1. Paired-angle-rotation scanning optical coherence tomography forward-imaging probe

    NASA Astrophysics Data System (ADS)

    Wu, Jigang; Conry, Michael; Gu, Chunhui; Wang, Fei; Yaqoob, Zahid; Yang, Changhuei

    2006-05-01

    We report a novel forward-imaging optical coherence tomography (OCT), needle-probe paired-angle-rotation scanning OCT (PARS-OCT) probe. The probe uses two rotating angled gradient-index lenses to scan the output OCT probe beam over a wide angular arc (˜19° half-angle) of the region forward of the probe. Among other advantages, this probe design is readily amenable to miniaturization and is capable of a variety of scan modes, including volumetric scans. To demonstrate the advantages of the probe design, we have constructed a prototype probe with an outer diameter of 1.65 mm and employed it to acquire four OCT images, with a 45° angle between adjacent images, of the gill structure of a Xenopus laevis tadpole. The system sensitivity was measured to be 93 dB by using the prototype probe with an illumination power of 450 μW on the sample. Moreover, the axial and the lateral resolutions of the probe are 9.3 and 10.3-12.5 μm, respectively.

  2. Transillumination and reflectance probes for in vivo near-IR imaging of dental caries

    NASA Astrophysics Data System (ADS)

    Simon, Jacob C.; Lucas, Seth A.; Staninec, Michal; Tom, Henry; Chan, Kenneth H.; Darling, Cynthia L.; Fried, Daniel

    2014-02-01

    Previous studies have demonstrated the utility of near infrared (NIR) imaging for caries detection employing transillumination and reflectance imaging geometries. Three intra-oral NIR imaging probes were fabricated for the acquisition of in vivo, real time videos using a high definition InGaAs SWIR camera and near-IR broadband light sources. Two transillumination probes provide occlusal and interproximal images using 1300-nm light where water absorption is low and enamel manifests the highest transparency. A third reflectance probe utilizes cross polarization and operates at >1500-nm, where water absorption is higher which reduces the reflectivity of sound tissues, significantly increasing lesion contrast. These probes are being used in an ongoing clinical study to assess the diagnostic performance of NIR imaging for the detection of caries lesions in teeth scheduled for extraction for orthodontic reasons.

  3. Variation in the human ribs geometrical properties and mechanical response based on X-ray computed tomography images resolution.

    PubMed

    Perz, Rafał; Toczyski, Jacek; Subit, Damien

    2015-01-01

    Computational models of the human body are commonly used for injury prediction in automobile safety research. To create these models, the geometry of the human body is typically obtained from segmentation of medical images such as computed tomography (CT) images that have a resolution between 0.2 and 1mm/pixel. While the accuracy of the geometrical and structural information obtained from these images depend greatly on their resolution, the effect of image resolution on the estimation of the ribs geometrical properties has yet to be established. To do so, each of the thirty-four sections of ribs obtained from a Post Mortem Human Surrogate (PMHS) was imaged using three different CT modalities: standard clinical CT (clinCT), high resolution clinical CT (HRclinCT), and microCT. The images were processed to estimate the rib cross-section geometry and mechanical properties, and the results were compared to those obtained from the microCT images by computing the 'deviation factor', a metric that quantifies the relative difference between results obtained from clinCT and HRclinCT to those obtained from microCT. Overall, clinCT images gave a deviation greater than 100%, and were therefore deemed inadequate for the purpose of this study. HRclinCT overestimated the rib cross-sectional area by 7.6%, the moments of inertia by about 50%, and the cortical shell area by 40.2%, while underestimating the trabecular area by 14.7%. Next, a parametric analysis was performed to quantify how the variations in the estimate of the geometrical properties affected the rib predicted mechanical response under antero-posterior loading. A variation of up to 45% for the predicted peak force and up to 50% for the predicted stiffness was observed. These results provide a quantitative estimate of the sensitivity of the response of the FE model to the resolution of the images used to generate it. They also suggest that a correction factor could be derived from the comparison between microCT and

  4. Affine Legendre moment invariants for image watermarking robust to geometric distortions

    PubMed Central

    Zhang, Hui; Shu, Huazhong; Coatrieux, Gouenou; Zhu, Jie; Wu, Jonathan Q. M.; Zhang, Yue; Zhu, Hongqing; Luo, Limin

    2011-01-01

    Geometric distortions are generally simple and effective attacks for many watermarking methods. They can make detection and extraction of the embedded watermark difficult or even impossible by destroying the synchronization between the watermark reader and the embedded watermark. In this paper, we propose a new watermarking approach which allows watermark detection and extraction under affine transformation attacks. The novelty of our approach stands on a set of affine invariants we derived from Legendre moments. Watermark embedding and detection are directly performed on this set of invariants. We also show how these moments can be exploited for estimating the geometric distortion parameters in order to permit watermark extraction. Experimental results show that the proposed watermarking scheme is robust to a wide range of attacks: geometric distortion, filtering, compression, and additive noise. PMID:21342852

  5. High-throughput fiber-array transvaginal ultrasound/photoacoustic probe for ovarian cancer imaging

    NASA Astrophysics Data System (ADS)

    Salehi, Hassan S.; Kumavor, Patrick D.; Alqasemi, Umar; Li, Hai; Wang, Tianheng; Zhu, Quing

    2014-03-01

    A high-throughput ultrasound/photoacoustic probe for delivering high contrast and signal-to-noise ratio images was designed, constructed, and tested. The probe consists of a transvaginal ultrasound array integrated with four 1mm-core optical fibers and a sheath. The sheath encases transducer and is lined with highly reflecting aluminum for high intensity light output and uniformity while at the same time remaining below the maximum permissible exposure (MPE) recommended by the American National Standards Institute (ANSI). The probe design was optimized by simulating the light fluence distribution in Zemax. The performance of the probe was evaluated by experimental measurements of the fluence and real-time imaging of polyethylene-tubing filled with blood. These results suggest that our probe has great potential for in vivo imaging and characterization of ovarian cancer.

  6. Geometric and Reflectance Signature Characterization of Complex Canopies Using Hyperspectral Stereoscopic Images from Uav and Terrestrial Platforms

    NASA Astrophysics Data System (ADS)

    Honkavaara, E.; Hakala, T.; Nevalainen, O.; Viljanen, N.; Rosnell, T.; Khoramshahi, E.; Näsi, R.; Oliveira, R.; Tommaselli, A.

    2016-06-01

    Light-weight hyperspectral frame cameras represent novel developments in remote sensing technology. With frame camera technology, when capturing images with stereoscopic overlaps, it is possible to derive 3D hyperspectral reflectance information and 3D geometric data of targets of interest, which enables detailed geometric and radiometric characterization of the object. These technologies are expected to provide efficient tools in various environmental remote sensing applications, such as canopy classification, canopy stress analysis, precision agriculture, and urban material classification. Furthermore, these data sets enable advanced quantitative, physical based retrieval of biophysical and biochemical parameters by model inversion technologies. Objective of this investigation was to study the aspects of capturing hyperspectral reflectance data from unmanned airborne vehicle (UAV) and terrestrial platform with novel hyperspectral frame cameras in complex, forested environment.

  7. A fluorescent probe for imaging p53-MDM2 protein-protein interaction.

    PubMed

    Liu, Zhenzhen; Miao, Zhenyuan; Li, Jin; Fang, Kun; Zhuang, Chunlin; Du, Lupei; Sheng, Chunquan; Li, Minyong

    2015-04-01

    In this article, we describe a no-wash small-molecule fluorescent probe for detecting and imaging p53-MDM2 protein-protein interaction based on an environment-sensitive fluorescent turn-on mechanism. After extensive biological examination, this probe L1 exhibited practical activity and selectivity in vitro and in cellulo.

  8. Hoechst tagging: a modular strategy to design synthetic fluorescent probes for live-cell nucleus imaging.

    PubMed

    Nakamura, Akinobu; Takigawa, Kazumasa; Kurishita, Yasutaka; Kuwata, Keiko; Ishida, Manabu; Shimoda, Yasushi; Hamachi, Itaru; Tsukiji, Shinya

    2014-06-11

    We report a general strategy to create small-molecule fluorescent probes for the nucleus in living cells. Our strategy is based on the attachment of the DNA-binding Hoechst compound to a fluorophore of interest. Using this approach, simple fluorescein, BODIPY, and rhodamine dyes were readily converted to novel turn-on fluorescent nucleus-imaging probes.

  9. Imaging of oxygenation in 3D tissue models with multi-modal phosphorescent probes

    NASA Astrophysics Data System (ADS)

    Papkovsky, Dmitri B.; Dmitriev, Ruslan I.; Borisov, Sergei

    2015-03-01

    Cell-penetrating phosphorescence based probes allow real-time, high-resolution imaging of O2 concentration in respiring cells and 3D tissue models. We have developed a panel of such probes, small molecule and nanoparticle structures, which have different spectral characteristics, cell penetrating and tissue staining behavior. The probes are compatible with conventional live cell imaging platforms and can be used in different detection modalities, including ratiometric intensity and PLIM (Phosphorescence Lifetime IMaging) under one- or two-photon excitation. Analytical performance of these probes and utility of the O2 imaging method have been demonstrated with different types of samples: 2D cell cultures, multi-cellular spheroids from cancer cell lines and primary neurons, excised slices from mouse brain, colon and bladder tissue, and live animals. They are particularly useful for hypoxia research, ex-vivo studies of tissue physiology, cell metabolism, cancer, inflammation, and multiplexing with many conventional fluorophors and markers of cellular function.

  10. Synthesis and characterization of novel fluorescent nitrogen-containing bisphosphonate imaging probes for bone active drugs

    PubMed Central

    Sun, Shuting; Błażewska, Katarzyna M.; Kashemirov, Boris A.; Roelofs, Anke J.; Coxon, Fraser P.; Rogers, Michael J.; Ebetino, Frank H.; McKenna, Michael J.; McKenna, Charles E.

    2011-01-01

    Progress in the synthesis of novel fluorescent conjugates of N-heterocyclic bisphosphonate drugs and related analogues, together with some recent applications of these compounds as imaging probes, are briefly discussed. PMID:21894242

  11. A targeted illumination optical fiber probe for high resolution fluorescence imaging and optical switching

    PubMed Central

    Shinde, Anant; Perinchery, Sandeep Menon; Murukeshan, Vadakke Matham

    2017-01-01

    An optical imaging probe with targeted multispectral and spatiotemporal illumination features has applications in many diagnostic biomedical studies. However, these systems are mostly adapted in conventional microscopes, limiting their use for in vitro applications. We present a variable resolution imaging probe using a digital micromirror device (DMD) with an achievable maximum lateral resolution of 2.7 μm and an axial resolution of 5.5 μm, along with precise shape selective targeted illumination ability. We have demonstrated switching of different wavelengths to image multiple regions in the field of view. Moreover, the targeted illumination feature allows enhanced image contrast by time averaged imaging of selected regions with different optical exposure. The region specific multidirectional scanning feature of this probe has facilitated high speed targeted confocal imaging. PMID:28368033

  12. Construction of specific magnetic resonance imaging/optical dual-modality molecular probe used for imaging angiogenesis of gastric cancer.

    PubMed

    Yan, Xuejie; Song, Xiaoyan; Wang, Zhenbo

    2017-05-01

    The purpose of the study was to construct specific magnetic resonance imaging (MRI)/optical dual-modality molecular probe. Tumor-bearing animal models were established. MRI/optical dual-modality molecular probe was construed by coupling polyethylene glycol (PEG)-modified nano-Fe3O4 with specific targeted cyclopeptide GX1 and near-infrared fluorescent dyes Cy5.5. MRI/optical imaging effects of the probe were observed and the feasibility of in vivo double-modality imaging was discussed. It was found that, the double-modality probe was of high stability; tumor signal of the experimental group tended to be weak after injection of the probe, but rose to a level which was close to the previous level after 18 h (p > 0.05). We successively completed the construction of an ideal MRI/optical dual-modality molecular probe. MRI/optical dual-modality molecular probe which can selectively gather in gastric cancer is expected to be a novel probe used for diagnosing gastric cancer in the early stage.

  13. Evaluation of IsoCal geometric calibration system for Varian linacs equipped with on-board imager and electronic portal imaging device imaging systems.

    PubMed

    Gao, Song; Du, Weiliang; Balter, Peter; Munro, Peter; Jeung, Andrew

    2014-05-08

    The purpose of this study is to evaluate the accuracy and reproducibility of the IsoCal geometric calibration system for kilovoltage (kV) and megavoltage (MV) imagers on Varian C-series linear accelerators (linacs). IsoCal calibration starts by imaging a phantom and collimator plate using MV images with different collimator angles, as well as MV and kV images at different gantry angles. The software then identifies objects on the collimator plate and in the phantom to determine the location of the treatment isocenter and its relation to the MV and kV imager centers. It calculates offsets between the positions of the imaging panels and the treatment isocenter as a function of gantry angle and writes a correction file that can be applied to MV and kV systems to correct for those offsets in the position of the panels. We performed IsoCal calibration three times on each of five Varian C-series linacs, each time with an independent setup. We then compared the IsoCal calibrations with a simplified Winston-Lutz (WL)-based system and with a Varian cubic phantom (VC)-based system. The maximum IsoCal corrections ranged from 0.7 mm to 1.5 mm for MV and 0.9 mm to 1.8 mm for kV imagers across the five linacs. The variations in the three calibrations for each linac were less than 0.2 mm. Without IsoCal correction, the WL results showed discrepancies between the treatment isocenter and the imager center of 0.9 mm to 1.6 mm (for the MV imager) and 0.5 mm to 1.1 mm (for the kV imager); with IsoCal corrections applied, the differences were reduced to 0.2 mm to 0.6 mm (MV) and 0.3 mm to 0.6 mm (kV) across the five linacs. The VC system was not as precise as the WL system, but showed similar results, with discrepancies of less than 1.0 mm when the IsoCal corrections were applied. We conclude that IsoCal is an accurate and consistent method for calibration and periodic quality assurance of MV and kV imaging systems.

  14. X-ray phase computed tomography for nanoparticulated imaging probes and therapeutics: preliminary feasibility study

    NASA Astrophysics Data System (ADS)

    Tang, Xiangyang; Yang, Yi; Tang, Shaojie

    2011-03-01

    With the scientific progress in cancer biology, pharmacology and biomedical engineering, the nano-biotechnology based imaging probes and therapeutical agents (namely probes/agents) - a form of theranostics - are among the strategic solutions bearing the hope for the cure of cancer. The key feature distinguishing the nanoparticulated probes/agents from their conventional counterparts is their targeting capability. A large surface-to-volume ratio in nanoparticulated probes/agents enables the accommodation of multiple targeting, imaging and therapeutic components to cope with the intra- and inter-tumor heterogeneity. Most nanoparticulated probes/agents are synthesized with low atomic number materials and thus their x-ray attenuation are very similar to biological tissues. However, their microscopic structures are very different, which may result in significant differences in their refractive properties. Recently, the investigation in the x-ray grating-based differential phase contrast (DPC) CT has demonstrated its advantages in differentiating low-atomic materials over the conventional attenuation-based CT. We believe that a synergy of x-ray grating-based DPC CT and nanoparticulated imaging probes and therapeutic agents may play a significant role in extensive preclinical and clinical applications, or even become a modality for molecular imaging. Hence, we propose to image the refractive property of nanoparticulated imaging probes and therapeutical agents using x-ray grating-based DPC CT. In this work, we conduct a preliminary feasibility study with a focus to characterize the contrast-to-noise ratio (CNR) and contrast-detail behavior of the x-ray grating-based DPC CT. The obtained data may be instructive to the architecture design and performance optimization of the x-ray grating-based DPC CT for imaging biomarker-targeted imaging probes and therapeutic agents, and even informative to the translation of preclinical research in theranostics into clinical applications.

  15. A novel technique to evaluate the geometrical accuracy of CT-MR image fusion in Gamma Knife radiosurgery procedures

    NASA Astrophysics Data System (ADS)

    Thomas, Sajeev; Sampath, S.; Indiradevi, B.; Bhanumathy, G.; Supe, Sanjay S.; Musthafa, M. M.

    2010-01-01

    In order to optimize the accuracy of imaging in Gamma Knife radiosurgery using the image fusion options available in the Leksell gamma plan. Phantom images from 1.5 Tesla MRI Scan (Magnetom vision - Siemens) and Computed Tomography images from Philips Brilliance 16 CT scanner were used for image fusion in Gammaplan treatment planning system. The images were fused using co-registration technique using multiview and imagemerge modules. Stereotactic coordinates were then calculated for known targets. Vector distances from the centre of the Leksell coordinate system to five known targets were measured in CT, MR and CT-MR fused images and compared with geometrical measurements. The mean values of maximum absolute errors were 0.34 mm, 0.41 mm.0.38 mm (along x-axis), 0.43 mm, 1.53 mm, 0.62 mm (along y-axis) and 0.75 mm 2.02 mm, 0.93 mm (along z-axis) for CT, MR and CT-MR fused image data respectively. The mean error in calculating the vector distances from the center of the Leksell coordinate system (100, 100, 100) to the known target volumes are 0.22 mm, 0.8 mm and 0.43 mm for CT, MR and CT-MR fused images, respectively. Image fusion functions available in gamma plan are useful for combining the features of CT and MR imaging modalities. These methods are highly useful in clinical situations where the error associated with Magnetic Resonance Imaging is beyond acceptable levels.

  16. Evaluation of the geometric accuracy of surrogate-based gated VMAT using intrafraction kilovoltage x-ray images

    SciTech Connect

    Li Ruijiang; Mok, Edward; Han, Bin; Koong, Albert; Xing Lei

    2012-05-15

    Purpose: To evaluate the geometric accuracy of beam targeting in external surrogate-based gated volumetric modulated arc therapy (VMAT) using kilovoltage (kV) x-ray images acquired during dose delivery. Methods: Gated VMAT treatments were delivered using a Varian TrueBeam STx Linac for both physical phantoms and patients. Multiple gold fiducial markers were implanted near the target. The reference position was created for each implanted marker, representing its correct position at the gating threshold. The gating signal was generated from the RPM system. During the treatment, kV images were acquired immediately before MV beam-on at every breathing cycle, using the on-board imaging system. All implanted markers were detected and their 3D positions were estimated using in-house developed software. The positioning error of a marker is defined as the distance of the marker from its reference position for each frame of the images. The overall error of the system is defined as the average over all markers. For the phantom study, both sinusoidal motion (1D and 3D) and real human respiratory motion was simulated for the target and surrogate. In the baseline case, the two motions were synchronized for the first treatment fraction. To assess the effects of surrogate-target correlation on the geometric accuracy, a phase shift of 5% and 10% between the two motions was introduced. For the patient study, intrafraction kV images of five stereotactic body radiotherapy (SBRT) patients were acquired for one or two fractions. Results: For the phantom study, a high geometric accuracy was achieved in the baseline case (average error: 0.8 mm in the superior-inferior or SI direction). However, the treatment delivery is prone to geometric errors if changes in the target-surrogate relation occur during the treatment: the average error was increased to 2.3 and 4.7 mm for the phase shift of 5% and 10%, respectively. Results obtained with real human respiratory curves show a similar trend

  17. Fluoromodule-based reporter/probes designed for in vivo fluorescence imaging

    PubMed Central

    Zhang, Ming; Chakraborty, Subhasish K.; Sampath, Padma; Rojas, Juan J.; Hou, Weizhou; Saurabh, Saumya; Thorne, Steve H.; Bruchez, Marcel P.; Waggoner, Alan S.

    2015-01-01

    Optical imaging of whole, living animals has proven to be a powerful tool in multiple areas of preclinical research and has allowed noninvasive monitoring of immune responses, tumor and pathogen growth, and treatment responses in longitudinal studies. However, fluorescence-based studies in animals are challenging because tissue absorbs and autofluoresces strongly in the visible light spectrum. These optical properties drive development and use of fluorescent labels that absorb and emit at longer wavelengths. Here, we present a far-red absorbing fluoromodule–based reporter/probe system and show that this system can be used for imaging in living mice. The probe we developed is a fluorogenic dye called SC1 that is dark in solution but highly fluorescent when bound to its cognate reporter, Mars1. The reporter/probe complex, or fluoromodule, produced peak emission near 730 nm. Mars1 was able to bind a variety of structurally similar probes that differ in color and membrane permeability. We demonstrated that a tool kit of multiple probes can be used to label extracellular and intracellular reporter–tagged receptor pools with 2 colors. Imaging studies may benefit from this far-red excited reporter/probe system, which features tight coupling between probe fluorescence and reporter binding and offers the option of using an expandable family of fluorogenic probes with a single reporter gene. PMID:26348895

  18. A resonant scanning dipole-antenna probe for enhanced nanoscale imaging.

    PubMed

    Neumann, Lars; van 't Oever, Jorick; van Hulst, Niek F

    2013-11-13

    We present a scanning antenna probe that provides 35 nm optical hotspots with a 16-fold excitation enhancement. A resonant optical antenna, tuned to operation in the visible, is carved into the aluminum-coated scanning probe. The antenna resonances, field localization, excitation, and polarization response are probed in the near-field by scanning over single fluorescent nanobeads. At the same time, the distance-dependent coupling of the emission to the antenna mode is mapped. Good agreement with theory is obtained. The presented scanning antenna approach is useful for both nanoscale plasmonic mode imaging and (bio)imaging.

  19. Chemical-contrast imaging with pulse-shaping based pump-probe spectroscopy

    NASA Astrophysics Data System (ADS)

    Flynn, Daniel C.; Bhagwat, Amar R.; Ogilvie, Jennifer P.

    2013-02-01

    Ultrafast pump-probe spectroscopy and pulse-shaping techniques are providing new modes of contrast for the field of multiphoton microscopy. Endogenous species such as heme proteins show rich nonlinear spectroscopic signatures of excited state absorption, stimulated emission and ground-state bleaching. Commercially available octave-spanning Ti:sapphire oscillators offer new opportunities for imaging based on pump-probe contrast. Spatial light modulators take advantage of this large bandwidth, shaping pulses of light to selectively excite molecular structures with similar spectral properties. We present two-color pump-probe imaging of heme proteins solutions and red blood cells.

  20. Retrospective correction of B0-field-induced geometric distortions in multislice echo planar images: a 3D solution

    NASA Astrophysics Data System (ADS)

    McColl, Roderick W.; Coburn, Edward A.

    2000-04-01

    A method has been developed to utilize a 3D B0 fieldmap, with a multi-volume-of-interest segmentation map, to quantify and correct geometric distortions in echo-planar images. The purpose is to provide accurate co-registration of anatomical MRI to functional MRI time course sequences. A data structure capable of extracting and reporting the necessary information forms a central part of the solution. Images were obtained from a 1.5 Tesla scanner with an experimental y-gradient insert coil. Two 3D-gradient echo sequences supply the data needed to calculate the B0 map across the volume. Segmentation of the volume into brain/background produces the data needed for the phase unwrapping and volume(s) of interest generation, from which the global B0 variation map is obtained. Subsequent EPI acquisition yields the fMRI time- course information. Tests were carried out on a phantom and a human volunteer engaged in a motor task (finger-tapping). Strong distortions were measured, and subsequently corrected, particularly near the petrous bone/mastoid air cells and in the frontal and maxillary sinuses. Additionally, a strong eddy current resulting from the unshielded y-gradient was detected. The method facilitates geometric distortion correction through an imaging volume, containing multiple regions of interest within a slice, starting from a single starting point.

  1. Application of Riesz transforms to the isotropic AM-PM decomposition of geometrical-optical illusion images.

    PubMed

    Sierra-Vázquez, Vicente; Serrano-Pedraza, Ignacio

    2010-04-01

    The existence of a special second-order mechanism in the human visual system, able to demodulate the envelope of visual stimuli, suggests that spatial information contained in the image envelope may be perceptually relevant. The Riesz transform, a natural isotropic extension of the Hilbert transform to multidimensional signals, was used here to demodulate band-pass filtered images of well-known visual illusions of length, size, direction, and shape. We show that the local amplitude of the monogenic signal or envelope of each illusion image conveys second-order information related to image holistic spatial structure, whereas the local phase component conveys information about the spatial features. Further low-pass filtering of the illusion image envelopes creates physical distortions that correspond to the subjective distortions perceived in the illusory images. Therefore the envelope seems to be the image component that physically carries the spatial information about these illusions. This result contradicts the popular belief that the relevant spatial information to perceive geometrical-optical illusions is conveyed only by the lower spatial frequencies present in their Fourier spectrum.

  2. Magnetic resonance image reconstruction using trained geometric directions in 2D redundant wavelets domain and non-convex optimization.

    PubMed

    Ning, Bende; Qu, Xiaobo; Guo, Di; Hu, Changwei; Chen, Zhong

    2013-11-01

    Reducing scanning time is significantly important for MRI. Compressed sensing has shown promising results by undersampling the k-space data to speed up imaging. Sparsity of an image plays an important role in compressed sensing MRI to reduce the image artifacts. Recently, the method of patch-based directional wavelets (PBDW) which trains geometric directions from undersampled data has been proposed. It has better performance in preserving image edges than conventional sparsifying transforms. However, obvious artifacts are presented in the smooth region when the data are highly undersampled. In addition, the original PBDW-based method does not hold obvious improvement for radial and fully 2D random sampling patterns. In this paper, the PBDW-based MRI reconstruction is improved from two aspects: 1) An efficient non-convex minimization algorithm is modified to enhance image quality; 2) PBDW are extended into shift-invariant discrete wavelet domain to enhance the ability of transform on sparsifying piecewise smooth image features. Numerical simulation results on vivo magnetic resonance images demonstrate that the proposed method outperforms the original PBDW in terms of removing artifacts and preserving edges.

  3. Local collective motion analysis for multi-probe dynamic imaging and microrheology

    NASA Astrophysics Data System (ADS)

    Khan, Manas; Mason, Thomas G.

    2016-08-01

    Dynamical artifacts, such as mechanical drift, advection, and hydrodynamic flow, can adversely affect multi-probe dynamic imaging and passive particle-tracking microrheology experiments. Alternatively, active driving by molecular motors can cause interesting non-Brownian motion of probes in local regions. Existing drift-correction techniques, which require large ensembles of probes or fast temporal sampling, are inadequate for handling complex spatio-temporal drifts and non-Brownian motion of localized domains containing relatively few probes. Here, we report an analytical method based on local collective motion (LCM) analysis of as few as two probes for detecting the presence of non-Brownian motion and for accurately eliminating it to reveal the underlying Brownian motion. By calculating an ensemble-average, time-dependent, LCM mean square displacement (MSD) of two or more localized probes and comparing this MSD to constituent single-probe MSDs, we can identify temporal regimes during which either thermal or athermal motion dominates. Single-probe motion, when referenced relative to the moving frame attached to the multi-probe LCM trajectory, provides a true Brownian MSD after scaling by an appropriate correction factor that depends on the number of probes used in LCM analysis. We show that LCM analysis can be used to correct many different dynamical artifacts, including spatially varying drifts, gradient flows, cell motion, time-dependent drift, and temporally varying oscillatory advection, thereby offering a significant improvement over existing approaches.

  4. Enhanced Fluorescence Imaging of Live Cells by Effective Cytosolic Delivery of Probes

    PubMed Central

    Massignani, Marzia; Canton, Irene; Sun, Tao; Hearnden, Vanessa; MacNeil, Sheila; Blanazs, Adam; Armes, Steven P.; Lewis, Andrew; Battaglia, Giuseppe

    2010-01-01

    Background Microscopic techniques enable real-space imaging of complex biological events and processes. They have become an essential tool to confirm and complement hypotheses made by biomedical scientists and also allow the re-examination of existing models, hence influencing future investigations. Particularly imaging live cells is crucial for an improved understanding of dynamic biological processes, however hitherto live cell imaging has been limited by the necessity to introduce probes within a cell without altering its physiological and structural integrity. We demonstrate herein that this hurdle can be overcome by effective cytosolic delivery. Principal Findings We show the delivery within several types of mammalian cells using nanometre-sized biomimetic polymer vesicles (a.k.a. polymersomes) that offer both highly efficient cellular uptake and endolysomal escape capability without any effect on the cellular metabolic activity. Such biocompatible polymersomes can encapsulate various types of probes including cell membrane probes and nucleic acid probes as well as labelled nucleic acids, antibodies and quantum dots. Significance We show the delivery of sufficient quantities of probes to the cytosol, allowing sustained functional imaging of live cells over time periods of days to weeks. Finally the combination of such effective staining with three-dimensional imaging by confocal laser scanning microscopy allows cell imaging in complex three-dimensional environments under both mono-culture and co-culture conditions. Thus cell migration and proliferation can be studied in models that are much closer to the in vivo situation. PMID:20454666

  5. Methods for providing probe position and temperature information on MR images during interventional procedures.

    PubMed

    Patel, K C; Duerk, J L; Zhang, Q; Chung, Y C; Williams, M; Kaczynski, K; Wendt, M; Lewin, J S

    1998-10-01

    Interventional magnetic resonance imaging (MRI) can be defined as the use of MR images for guiding and monitoring interventional procedures (e.g., biopsy, drainage) or minimally invasive therapy (e.g., thermal ablation). This work describes the development of a prototype graphical user interface and the appropriate software methods to accurately overlay a representation of a rigid interventional device [e.g., biopsy needle, radio-frequency (RF) probe] onto an MR image given only the probe's spatial position and orientation as determined from a three-dimensional (3-D) localizer used for interactive scan plane definition. This permits 1) "virtual tip tracking," where the probe tip location is displayed on the image without the use of separate receiver coils or a "road map" image data set, and, 2) "extending" the probe to predict its path if it were directly moved forward toward the target tissue. Further, this paper describes the design and implementation of a method to facilitate the monitoring of thermal ablation procedures by displaying and overlaying temperature maps from temperature sensitive MR acquisitions. These methods provide rapid graphical updates of probe position and temperature changes to aid the physician during the actual interventional MRI procedures without altering the usual operation of the MR imager.

  6. Near-infrared fluorescent probes in cancer imaging and therapy: an emerging field.

    PubMed

    Yi, Xiaomin; Wang, Fuli; Qin, Weijun; Yang, Xiaojian; Yuan, Jianlin

    2014-01-01

    Near-infrared fluorescence (NIRF) imaging is an attractive modality for early cancer detection with high sensitivity and multi-detection capability. Due to convenient modification by conjugating with moieties of interests, NIRF probes are ideal candidates for cancer targeted imaging. Additionally, the combinatory application of NIRF imaging and other imaging modalities that can delineate anatomical structures extends fluorometric determination of biomedical information. Moreover, nanoparticles loaded with NIRF dyes and anticancer agents contribute to the synergistic management of cancer, which integrates the advantage of imaging and therapeutic functions to achieve the ultimate goal of simultaneous diagnosis and treatment. Appropriate probe design with targeting moieties can retain the original properties of NIRF and pharmacokinetics. In recent years, great efforts have been made to develop new NIRF probes with better photostability and strong fluorescence emission, leading to the discovery of numerous novel NIRF probes with fine photophysical properties. Some of these probes exhibit tumoricidal activities upon light radiation, which holds great promise in photothermal therapy, photodynamic therapy, and photoimmunotherapy. This review aims to provide a timely and concise update on emerging NIRF dyes and multifunctional agents. Their potential uses as agents for cancer specific imaging, lymph node mapping, and therapeutics are included. Recent advances of NIRF dyes in clinical use are also summarized.

  7. Near-infrared fluorescent probes in cancer imaging and therapy: an emerging field

    PubMed Central

    Yi, Xiaomin; Wang, Fuli; Qin, Weijun; Yang, Xiaojian; Yuan, Jianlin

    2014-01-01

    Near-infrared fluorescence (NIRF) imaging is an attractive modality for early cancer detection with high sensitivity and multi-detection capability. Due to convenient modification by conjugating with moieties of interests, NIRF probes are ideal candidates for cancer targeted imaging. Additionally, the combinatory application of NIRF imaging and other imaging modalities that can delineate anatomical structures extends fluorometric determination of biomedical information. Moreover, nanoparticles loaded with NIRF dyes and anticancer agents contribute to the synergistic management of cancer, which integrates the advantage of imaging and therapeutic functions to achieve the ultimate goal of simultaneous diagnosis and treatment. Appropriate probe design with targeting moieties can retain the original properties of NIRF and pharmacokinetics. In recent years, great efforts have been made to develop new NIRF probes with better photostability and strong fluorescence emission, leading to the discovery of numerous novel NIRF probes with fine photophysical properties. Some of these probes exhibit tumoricidal activities upon light radiation, which holds great promise in photothermal therapy, photodynamic therapy, and photoimmunotherapy. This review aims to provide a timely and concise update on emerging NIRF dyes and multifunctional agents. Their potential uses as agents for cancer specific imaging, lymph node mapping, and therapeutics are included. Recent advances of NIRF dyes in clinical use are also summarized. PMID:24648733

  8. Portable oral cancer detection using a miniature confocal imaging probe with a large field of view

    NASA Astrophysics Data System (ADS)

    Wang, Youmin; Raj, Milan; McGuff, H. Stan; Bhave, Gauri; Yang, Bin; Shen, Ting; Zhang, Xiaojing

    2012-06-01

    We demonstrate a MEMS micromirror enabled handheld confocal imaging probe for portable oral cancer detection, where a comparatively large field of view (FOV) was generated through the programmable Lissajous scanning pattern of the MEMS micromirror. Miniaturized handheld MEMS confocal imaging probe was developed, and further compared with the desktop confocal prototype under clinical setting. For the handheld confocal imaging system, optical design simulations using CODE VR® shows the lateral and axial resolution to be 0.98 µm and 4.2 µm, where experimental values were determined to be 3 µm and 5.8 µm, respectively, with a FOV of 280 µm×300 µm. Fast Lissajous imaging speed up to 2 fps was realized with improved Labview and Java based real-time imaging software. Properties such as 3D imaging through autofocusing and mosaic imaging for extended lateral view (6 mm × 8 mm) were examined for carcinoma real-time pathology. Neoplastic lesion tissues of giant cell fibroma and peripheral ossifying fibroma, the fibroma inside the paraffin box and ex vivo gross tissues were imaged by the bench-top and handheld imaging modalities, and further compared with commercial microscope imaging results. The MEMS scanner-based handheld confocal imaging probe shows great promise as a potential clinical tool for oral cancer diagnosis and treatment.

  9. High speed miniature motorized endoscopic probe for 3D optical frequency domain imaging

    NASA Astrophysics Data System (ADS)

    Li, Jianan; Feroldi, Fabio; Mo, Jianhua; Helderman, Frank; de Groot, Mattijs; de Boer, Johannes F.

    2013-03-01

    We present a miniature motorized endoscopic probe for Optical Frequency Domain Imaging with an outer diameter of 1.65 mm and a rotation speed of 3,000 - 12,500 rpm. This is the smallest motorized high speed OCT probe to our knowledge. The probe has a motorized distal end which provides a significant advantage over proximally driven probes since it does not require a drive shaft to transfer the rotational torque to the distal end of the probe and functions without a fiber rotary junction. The probe has a focal Full Width at Half Maximum of 9.6 μm and a working distance of 0.47 mm. We analyzed the non-uniform rotation distortion and found a location fluctuation of only 1.87° in repeated measurements of the same object. The probe was integrated in a high-speed Optical Frequency Domain Imaging setup at 1310 nm We demonstrated its performance with imaging ex vivo pig bronchial and in vivo goat lung.

  10. Multicolor probe-based confocal laser endomicroscopy: a new world for in vivo and real-time cellular imaging

    NASA Astrophysics Data System (ADS)

    Vercauteren, Tom; Doussoux, François; Cazaux, Matthieu; Schmid, Guillaume; Linard, Nicolas; Durin, Marie-Amélie; Gharbi, Hédi; Lacombe, François

    2013-03-01

    Since its inception in the field of in vivo imaging, endomicroscopy through optical fiber bundles, or probe-based Confocal Laser Endomicroscopy (pCLE), has extensively proven the benefit of in situ and real-time examination of living tissues at the microscopic scale. By continuously increasing image quality, reducing invasiveness and improving system ergonomics, Mauna Kea Technologies has turned pCLE not only into an irreplaceable research instrument for small animal imaging, but also into an accurate clinical decision making tool with applications as diverse as gastrointestinal endoscopy, pulmonology and urology. The current implementation of pCLE relies on a single fluorescence spectral band making different sources of in vivo information challenging to distinguish. Extending the pCLE approach to multi-color endomicroscopy therefore appears as a natural plan. Coupling simultaneous multi-laser excitation with minimally invasive, microscopic resolution, thin and flexible optics, allows the fusion of complementary and valuable biological information, thus paving the way to a combination of morphological and functional imaging. This paper will detail the architecture of a new system, Cellvizio Dual Band, capable of video rate in vivo and in situ multi-spectral fluorescence imaging with a microscopic resolution. In its standard configuration, the system simultaneously operates at 488 and 660 nm, where it automatically performs the necessary spectral, photometric and geometric calibrations to provide unambiguously co-registered images in real-time. The main hardware and software features, including calibration procedures and sub-micron registration algorithms, will be presented as well as a panorama of its current applications, illustrated with recent results in the field of pre-clinical imaging.

  11. High-fidelity hydrophilic probe for two-photon fluorescence lysosomal imaging.

    PubMed

    Wang, Xuhua; Nguyen, Dao M; Yanez, Ciceron O; Rodriguez, Luis; Ahn, Hyo-Yang; Bondar, Mykhailo V; Belfield, Kevin D

    2010-09-08

    The synthesis and characterization of a novel two-photon-absorbing fluorene derivative, LT1, selective for the lysosomes of HCT 116 cancer cells, is reported. Linear and nonlinear photophysical and photochemical properties of the probe were investigated to evaluate the potential of the probe for two-photon fluorescence microscopy (2PFM) lysosomal imaging. The cytotoxicity of the probe was investigated to evaluate the potential of using this probe for live two-photon fluorescence biological imaging applications. Colocalization studies of the probe with commercial Lysotracker Red in HCT 116 cells demonstrated the specific localization of the probe in the lysosomes with an extremely high colocalization coefficient (0.96). A figure of merit was introduced to allow comparison between probes. LT1 has a number of properties that far exceed those of commercial lysotracker probes, including higher two-photon absorption cross sections, good fluorescence quantum yield, and, importantly, high photostability, all resulting in a superior figure of merit. 2PFM was used to demonstrate lysosomal tracking with LT1.

  12. Wavelength-Dependent Differential Interference Contrast Microscopy: Selectively Imaging Nanoparticle Probes in Live Cells

    SciTech Connect

    Sun, Wei; Wang, Gufeng; Fang, Ning; and Yeung, Edward S.

    2009-11-15

    Gold and silver nanoparticles display extraordinarily large apparent refractive indices near their plasmon resonance (PR) wavelengths. These nanoparticles show good contrast in a narrow spectral band but are poorly resolved at other wavelengths in differential interference contrast (DIC) microscopy. The wavelength dependence of DIC contrast of gold/silver nanoparticles is interpreted in terms of Mie's theory and DIC working principles. We further exploit this wavelength dependence by modifying a DIC microscope to enable simultaneous imaging at two wavelengths. We demonstrate that gold/silver nanoparticles immobilized on the same glass slides through hybridization can be differentiated and imaged separately. High-contrast, video-rate images of living cells can be recorded both with and without illuminating the gold nanoparticle probes, providing definitive probe identification. Dual-wavelength DIC microscopy thus presents a new approach to the simultaneous detection of multiple probes of interest for high-speed live-cell imaging.

  13. Convergent synthesis and evaluation of (18)F-labeled azulenic COX2 probes for cancer imaging.

    PubMed

    Nolting, Donald D; Nickels, Michael; Tantawy, Mohammed N; Yu, James Y H; Xie, Jingping; Peterson, Todd E; Crews, Brenda C; Marnett, Larry; Gore, John C; Pham, Wellington

    2012-01-01

    The overall objectives of this research are to (i) develop azulene-based positron emission tomography (PET) probes and (ii) image COX2 as a potential biomarker of breast cancer. Several lines of research have demonstrated that COX2 is overexpressed in breast cancer and that its presence correlates with poor prognoses. While other studies have reported that COX2 inhibition can be modulated and used beneficially as a chemopreventive strategy in cancer, no viable mechanism for achieving that approach has yet been developed. This shortfall could be circumvented through in vivo imaging of COX2 activity, particularly using sensitive imaging techniques such as PET. Toward that goal, our laboratory focuses on the development of novel (18)F-labled COX2 probes. We began the synthesis of the probes by transforming tropolone into a lactone, which was subjected to an [8 + 2] cycloaddition reaction to yield 2-methylazulene as the core ring of the probe. After exploring numerous synthetic routes, the final target molecule and precursor PET compounds were prepared successfully using convergent synthesis. Conventional (18)F labeling methods caused precursor decomposition, which prompted us to hypothesize that the acidic protons of the methylene moiety between the azulene and thiazole rings were readily abstracted by a strong base such as potassium carbonate. Ultimately, this caused the precursors to disintegrate. This observation was supported after successfully using an (18)F labeling strategy that employed a much milder phosphate buffer. The (18)F-labeled COX2 probe was tested in a breast cancer xenograft mouse model. The data obtained via successive whole-body PET/CT scans indicated probe accumulation and retention in the tumor. Overall, the probe was stable in vivo and no defluorination was observed. A biodistribution study and Western blot analysis corroborate with the imaging data. In conclusion, this novel COX2 PET probe was shown to be a promising agent for cancer imaging

  14. Convergent synthesis and evaluation of 18F-labeled azulenic COX2 probes for cancer imaging

    PubMed Central

    Nolting, Donald D.; Nickels, Michael; Tantawy, Mohammed N.; Yu, James Y. H.; Xie, Jingping; Peterson, Todd E.; Crews, Brenda C.; Marnett, Larry; Gore, John C.; Pham, Wellington

    2013-01-01

    The overall objectives of this research are to (i) develop azulene-based positron emission tomography (PET) probes and (ii) image COX2 as a potential biomarker of breast cancer. Several lines of research have demonstrated that COX2 is overexpressed in breast cancer and that its presence correlates with poor prognoses. While other studies have reported that COX2 inhibition can be modulated and used beneficially as a chemopreventive strategy in cancer, no viable mechanism for achieving that approach has yet been developed. This shortfall could be circumvented through in vivo imaging of COX2 activity, particularly using sensitive imaging techniques such as PET. Toward that goal, our laboratory focuses on the development of novel 18F-labled COX2 probes. We began the synthesis of the probes by transforming tropolone into a lactone, which was subjected to an [8 + 2] cycloaddition reaction to yield 2-methylazulene as the core ring of the probe. After exploring numerous synthetic routes, the final target molecule and precursor PET compounds were prepared successfully using convergent synthesis. Conventional 18F labeling methods caused precursor decomposition, which prompted us to hypothesize that the acidic protons of the methylene moiety between the azulene and thiazole rings were readily abstracted by a strong base such as potassium carbonate. Ultimately, this caused the precursors to disintegrate. This observation was supported after successfully using an 18F labeling strategy that employed a much milder phosphate buffer. The 18F-labeled COX2 probe was tested in a breast cancer xenograft mouse model. The data obtained via successive whole-body PET/CT scans indicated probe accumulation and retention in the tumor. Overall, the probe was stable in vivo and no defluorination was observed. A biodistribution study and Western blot analysis corroborate with the imaging data. In conclusion, this novel COX2 PET probe was shown to be a promising agent for cancer imaging and

  15. Probing the improbable: imaging carbon atoms in alumina

    SciTech Connect

    Marquis, E A; Yahia, Noor; Larson, David J.; Miller, Michael K; Todd, Richard

    2010-01-01

    Atom-probe tomography has proven very powerful to analyze the detailed structure and chemistry of metallic alloys and semiconductor structures while ceramic materials have remained outside its standard purview. In the current work, we demonstrate that bulk alumina can be quantitatively analyzed and microstructural features observed. The analysis of grain boundary carbon segregation - barely achievable by electron microscopy - opens the possibility of understanding the mechanistic effects of dopants on mechanical properties, fracture and wear properties of bulk oxides.

  16. Two-photon fluorescent probe derived from naphthalimide for cysteine detection and imaging in living cells

    NASA Astrophysics Data System (ADS)

    Liu, Yanbin; Liu, Yuwen; Liu, Wei; Liang, Shucai

    2015-02-01

    A maleimide coupling naphthalimide was reported as new two-photon fluorescent (TPF) probe for cysteine (Cys). The probe was weakly fluorescent itself due to the donor-excited photoinduced electron transfer (d-PET). After reaction with Cys, d-PET process was blocked and fluorescence enhancement of the probe was observed at 470 nm. The d-PET principle was rationalized by theoretical calculations with density functional theory and time-dependent density functional theory. Thiol-maleimide addition between the probe and Cys was confirmed by 1H NMR and mass spectrum measurements. TPF analysis demonstrated a 24.7-fold emission increase of the probe induced by Cys upon excitation at 760 nm. The two-photon action cross-section of probe-Cys adduct at 760 nm reached 42 GM compared to 1.7 GM for free probe. The probe showed high sensitivity and selectivity to Cys over other potential interferences; especially it had the capability to discriminate Cys from glutathione and homocysteine. Through TPF imaging, the probe was successfully applied in the detection of Cys in living cells.

  17. A Novel Method for Imaging Apoptosis Using a Caspase-1 Near-Infrared Fluorescent Probe1

    PubMed Central

    Messerli, Shanta M; Prabhakar, Shilpa; Tang, Yi; Shah, Khalid; Cortes, Maria L; Murthy, Vidya; Weissleder, Ralph; Breakefield, Xandra O; Tung, Ching-Hsuan

    2004-01-01

    Abstract Here we describe a novel method for imaging apoptosis in cells using a near-infrared fluorescent (NIRF) probe selective for caspase-1 (interleukin 1β-converting enzyme, ICE). This biocompatible, optically quenched ICE-NIRF probe incorporates a peptide substrate, which can be selectively cleaved by caspase-1, resulting in the release of fluorescence signal. The specificity of this probe for caspase-1 is supported by various lines of evidence: 1) activation by purified caspase-1, but not another caspase in vitro; 2) activation of the probe by infection of cells with a herpes simplex virus amplicon vector (HGC-ICE-lacZ) expressing a catalytically active caspase-1-lacZ fusion protein; 3) inhibition of HGC-ICE-lacZ vector-induced activation of the probe by coincubation with the caspase-1 inhibitor YVAD-cmk, but not with a caspase-3 inhibitor; and 4) activation of the probe following standard methods of inducing apoptosis with staurosporine, ganciclovir, or ionizing radiation in culture. These results indicate that this novel ICE-NIRF probe can be used in monitoring endogenous and vector-expressed caspase-1 activity in cells. Furthermore, tumor implant experiments indicate that this ICE-NIRF probe can be used to detect caspase-1 activity in living animals. This novel ICE-NIRF probe should prove useful in monitoring endogenous and vector-expressed caspase-1 activity, and potentially apoptosis in cell culture and in vivo. PMID:15140398

  18. Water-soluble BODIPY-based fluorescent probe for mitochondrial imaging (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sui, Binglin; Tang, Simon; Woodward, Adam W.; Kim, Bosung; Belfield, Kevin D.

    2016-03-01

    A new mitochondrial targeting fluorescent probe is designed, synthesized, characterized, and investigated. The probe is composed of three moieties, a BODIPY platform working as the fluorophore, two triphenylphosphonium (TPP) groups serving as mitochondrial targeting moiety, and two long highly hydrophilic polyethylene glycol (PEG) chains to increase its water solubility and reduce its cytotoxicity. As a mitochondria-selective fluorescent probe, the probe exhibits a series of desirable advantages compared with other reported fluorescent mitochondrial probes. It is readily soluble in aqueous media and emits very strong fluorescence. Photophysical determination experiments show that the photophysical properties of the probe are independent of solvent polarity and it has high quantum yield in various solvents examined. The probe also has good photostability and pH insensitivity over a broad pH range. Results obtained from cell viability tests indicate that the cytotoxicity of the probe is very low. Confocal fluorescence microscopy colocalization experiments reveal that this probe possesses excellent mitochondrial targeting ability and it is suitable for imaging mitochondria in living cells.

  19. Geometrical Analysis of AMIE/Smart-1 Images and Applications to Photometric Studies of the Lunar Surface

    NASA Astrophysics Data System (ADS)

    Despan, Daniela; Erard, S.; Barucci, M. A.; Josset, J. L.; Beauvivre, S.; Chevrel, S.; Pinet, P.; Koschny, D.; Almeida, M.; Foing, B. H.; AMIE Team

    2007-10-01

    AMIE, the Advanced Moon micro-Imager Experiment on board the ESA lunar mission SMART-1, is an imaging system to survey the terrain in visible and near-infrared light. AMIE provides high resolution images obtained using a tele-objective with 5.3° x 5.3° field of view and a sensor of 1024 x 1024 pixels. The output images have resolution 45m/pixel at 500km, and are encoded with 10 bits/pixel. From the 300 Km pericenter altitude, the same field of view corresponds to a spatial resolution about 30 m/pixel. The FOV is shared by various filters, allowing to reconstruct mosaics of the surface in 3 colors, depending on pointing mode. Spot-pointing observations provide photometric sequences that allow to study the surface properties in restricted areas. One of the scientific objectives of the mission is to get high resolution imaging of the Moon surface, e.g. high latitude regions in the southern hemisphere. In order to map the lunar surface with AMIE, systematic analysis and processing is being carried on using the whole data set. Geometrical analysis of AMIE images relies on the SPICE system: image coordinates are computed to get precise projection at the surface, and illumination angles are computed to analyze the photometric sequences. High resolution mosaics were constructed then compared to lower resolution Clementine UV-Vis and NIR images. Spot-pointing sequences are used to constrain the photometric and physical properties of surface materials in areas of interest, based on Hapke's modeling. Optical alignment parameters in the Spice kernels have been refined and provide absolute coordinates in the IAU lunar frame (ULCN). They provide discrepancies with the Clementine basemap, ranging up to some 0.1° in the equatorial regions, as expected (e.g., Cook et al DPS 2002; Arcinal et al. EPSC 2006). A progress report will be presented at the conference.

  20. Electromechanical imaging of biomaterials by scanning probe microscopy.

    PubMed

    Rodriguez, B J; Kalinin, S V; Shin, J; Jesse, S; Grichko, V; Thundat, T; Baddorf, A P; Gruverman, A

    2006-02-01

    The majority of calcified and connective tissues possess complex hierarchical structure spanning the length scales from nanometers to millimeters. Understanding the biological functionality of these materials requires reliable methods for structural imaging on the nanoscale. Here, we demonstrate an approach for electromechanical imaging of the structure of biological samples on the length scales from tens of microns to nanometers using piezoresponse force microscopy (PFM), which utilizes the intrinsic piezoelectricity of biopolymers such as proteins and polysaccharides as the basis for high-resolution imaging. Nanostructural imaging of a variety of protein-based materials, including tooth, antler, and cartilage, is demonstrated. Visualization of protein fibrils with sub-10nm spatial resolution in a human tooth is achieved. Given the near-ubiquitous presence of piezoelectricity in biological systems, PFM is suggested as a versatile tool for micro- and nanostructural imaging in both connective and calcified tissues.

  1. Electromechanical Imaging of Biomaterials by Scanning Probe Microscopy

    SciTech Connect

    Rodriguez, Brian J; Kalinin, Sergei V; Shin, Junsoo; Jesse, Stephen; Grichko, V.; Thundat, Thomas George; Baddorf, Arthur P; Gruverman, A.

    2006-01-01

    The majority of calcified and connective tissues possess complex hierarchical structure spanning the length scales from nanometers to millimeters. Understanding the biological functionality of these materials requires reliable methods for structural imaging on the nanoscale. Here, we demonstrate an approach for electromechanical imaging of the structure of biological samples on the length scales from tens of microns to nanometers using piezoresponse force microscopy (PFM), which utilizes the intrinsic piezoelectricity of biopolymers such as proteins and polysaccharides as the basis for high-resolution imaging. Nanostructural imaging of a variety of protein-based materials, including tooth, antler, and cartilage, is demonstrated. Visualization of protein fibrils with sub-10 nm spatial resolution in a human tooth is achieved. Given the near-ubiquitous presence of piezoelectricity in biological systems, PFM is suggested as a versatile tool for micro- and nanostructural imaging in both connective and calcified tissues.

  2. Influence of probe-sample temperature difference on thermal mapping contrast in scanning thermal microscopy imaging

    NASA Astrophysics Data System (ADS)

    Kaźmierczak-Bałata, Anna; Juszczyk, Justyna; Trefon-Radziejewska, Dominika; Bodzenta, Jerzy

    2017-03-01

    The purpose of this work is to investigate the influence of a temperature difference through a probe-sample contact on thermal contrast in Scanning Thermal Microscopy imaging. A variety of combinations of temperature differences in the probe-sample system were first analyzed based on an electro-thermal finite element model. The numerical analysis included cooling the sample, as well as heating the sample and the probe. Due to the simplicity in the implementation, experimental verification involved modifying the standard imaging technique by heating the sample. Experiments were carried out in the temperature range between 298 K and 328 K. Contrast in thermal mapping was improved for a low probe current with a heated sample.

  3. Study on the SPR responses of various DNA probe concentrations by parallel scan spectral SPR imaging

    NASA Astrophysics Data System (ADS)

    Ma, Suihua; Liu, Le; Lu, Weiping; Zhang, Yaou; He, Yonghong; Guo, Jihua

    2008-12-01

    SPR sensors have become a high sensitive and label free method for characterizing and quantifying chemical and biochemical interactions. However, the relations between the SPR refractive index response and the property (such as concentrations) of biochemical probes are still lacking. In this paper, an experimental study on the SPR responses of varies concentrations of Legionella pneumophila mip DNA probes is presented. We developed a novel two-dimensional SPR sensing technique-parallel scan spectral SPR imaging-to detect an array of mip gene probes. This technique offers quantitative refractive index information with a high sensing throughput. By detecting mip DNA probes with different concentrations, we obtained the relations between the SPR refractive index response and the concentrations of mip DNA probes. These results are valuable for design and developing SPR based mip gene biochips.

  4. Integrated flexible handheld probe for imaging and evaluation of iridocorneal angle

    NASA Astrophysics Data System (ADS)

    Shinoj, Vengalathunadakal K.; Murukeshan, Vadakke Matham; Baskaran, Mani; Aung, Tin

    2015-01-01

    An imaging probe is designed and developed by integrating a miniaturized charge-coupled diode camera and light-emitting diode light source, which enables evaluation of the iridocorneal region inside the eye. The efficiency of the prototype probe instrument is illustrated initially by using not only eye models, but also samples such as pig eye. The proposed methodology and developed scheme are expected to find potential application in iridocorneal angle documentation, glaucoma diagnosis, and follow-up management procedures.

  5. Asteroid (4179) Toutatis size determination via optical images observed by the Chang'e-2 probe

    NASA Astrophysics Data System (ADS)

    Liu, P.; Huang, J.; Zhao, W.; Wang, X.; Meng, L.; Tang, X.

    2014-07-01

    This work is a physical and statistical study of the asteroid (4179) Toutatis using the optical images obtained by a solar panel monitor of the Chang'e-2 probe on Dec. 13, 2012 [1]. In the imaging strategy, the camera is focused at infinity. This is specially designed for the probe with its solar panels monitor's principle axis pointing to the relative velocity direction of the probe and Toutatis. The imaging strategy provides a dedicated way to resolve the size by multi-frame optical images. The inherent features of the data are: (1) almost no rotation was recorded because of the 5.41-7.35 Earth-day rotation period and the small amount of elapsed imaging time, only minutes, make the object stay in the images in a fixed position and orientation; (2) the sharpness of the upper left boundary and the vagueness of lower right boundary resulting from the direction of SAP (Sun-Asteroid-Probe angle) cause a varying accuracy in locating points at different parts of Toutatis. A common view is that direct, accurate measurements of asteroid shapes, sizes, and pole positions are now possible for larger asteroids that can be spatially resolved using the Hubble Space Telescope or large ground-based telescopes equipped with adaptive optics. For a quite complex planetary/asteroid probe study, these measurements certainly need continuous validation via a variety of ways [2]. Based on engineering parameters of the probe during the fly-by, the target spatial resolving and measuring procedures are described in the paper. Results estimated are optical perceptible size on the flyby epoch under the solar phase angles during the imaging. It is found that the perceptible size measured using the optical observations and the size derived from the radar observations by Ostro et al.~in 1995 [3], are close to one another.

  6. Dual-illumination mode, wide-field probe imaging scheme for imaging irido-corneal angle region inside eye

    NASA Astrophysics Data System (ADS)

    Shinoj, V. K.; Murukeshan, V. M.; Hong, Jesmond; Baskaran, M.; Aung, Tin

    2015-07-01

    Noninvasive medical imaging techniques have generated great interest and high potential in the research and development of ocular imaging and follow up procedures. It is well known that angle closure glaucoma is one of the major ocular diseases/ conditions that causes blindness. The identification and treatment of this disease are related primarily to angle assessment techniques. In this paper, we illustrate a probe-based imaging approach to obtain the images of the angle region in eye. The proposed probe consists of a micro CCD camera and LED/NIR laser light sources and they are configured at the distal end to enable imaging of iridocorneal region inside eye. With this proposed dualmodal probe, imaging is performed in light (white visible LED ON) and dark (NIR laser light source alone) conditions and the angle region is noticeable in both cases. The imaging using NIR sources have major significance in anterior chamber imaging since it evades pupil constriction due to the bright light and thereby the artificial altering of anterior chamber angle. The proposed methodology and developed scheme are expected to find potential application in glaucoma disease detection and diagnosis.

  7. An iminocoumarin benzothiazole-based fluorescent probe for imaging hydrogen sulfide in living cells.

    PubMed

    Zhang, Huatang; Xie, Yusheng; Wang, Ping; Chen, Ganchao; Liu, Ruochuan; Lam, Yun-Wah; Hu, Yi; Zhu, Qing; Sun, Hongyan

    2015-04-01

    Hydrogen sulfide (H2S) has recently been identified as the third gaseous signaling molecule that is involved in regulating many important cellular processes. We report herein a novel fluorescent probe for detecting H2S based on iminocoumarin benzothiazole scaffold. The probe displayed high sensitivity and around 80-fold increment in fluorescence signal after reacting with H2S under physiological condition. The fluorescent intensity of the probe was linearly related to H2S concentration in the range of 0-100 μM with a detection limit of 0.15 μM (3σ/slope). The probe also showed excellent selectivity towards H2S over other biologically relevant species, including ROS, RSS and RNS. Its selectivity for H2S is 32 folds higher than other reactive sulfur species. Furthermore, the probe has been applied for imaging H2S in living cells. Cell imaging experiments demonstrated that the probe is cell-permeable and can be used to monitor the alteration of H2S concentrations in living cells. We envisage that this probe can provide useful tools to further elucidate the biological roles of H2S.

  8. Enhanced Feature Based Mosaicing Technique for Visually and Geometrically Degraded Airborne Synthetic Aperture Radar Images

    NASA Astrophysics Data System (ADS)

    Manikandan, S.; Vardhini, J. P.

    2015-11-01

    In airborne synthetic aperture radar (SAR), there was a major problem encountered in the area of image mosaic in the absence of platform information and sensor information (geocoding), when SAR is applied in large-scale scene and the platform faces large changes. In order to enhance real-time performance and robustness of image mosaic, enhancement based Speeded-Up Robust Features (SURF) mosaic method for airborne SAR is proposed in this paper. SURF is a novel scale-invariant and rotation-invariant feature. It is perfect in its high computation, speed and robustness. In this paper, When the SAR image is acquired, initially the image is enhanced by using local statistic techniques and SURF is applied for SAR image matching accord to its characteristic, and then acquires its invariant feature for matching. In the process of image matching, the nearest neighbor rule for initial matching is used, and the wrong points of the matches are removed through RANSAC fitting algorithm. The proposed algorithm is implemented in different SAR images with difference in scale change, rotation change and noise. The proposed algorithm is compared with other existing algorithms and the quantitative and qualitative measures are calculated and tabulated. The proposed algorithm is robust to changes and the threshold is varied accordingly to increase the matching rate more than 95 %.

  9. a Semi-Rigorous Sensor Model for Precision Geometric Processing of Mini-Rf Bistatic Radar Images of the Moon

    NASA Astrophysics Data System (ADS)

    Kirk, R. L.; Barrett, J. M.; Wahl, D. E.; Erteza, I.; Jackowatz, C. V.; Yocky, D. A.; Turner, S.; Bussey, D. B. J.; Paterson, G. W.

    2016-06-01

    The spaceborne synthetic aperture radar (SAR) instruments known as Mini-RF were designed to image shadowed areas of the lunar poles and assay the presence of ice deposits by quantitative polarimetry. We have developed radargrammetric processing techniques to enhance the value of these observations by removing spacecraft ephemeris errors and distortions caused by topographic parallax so the polarimetry can be compared with other data sets. Here we report on the extension of this capability from monostatic imaging (signal transmitted and received on the same spacecraft) to bistatic (transmission from Earth and reception on the spacecraft) which provides a unique opportunity to measure radar scattering at nonzero phase angles. In either case our radargrammetric sensor models first reconstruct the observed range and Doppler frequency from recorded image coordinates, then determine the ground location with a corrected trajectory on a more detailed topographic surface. The essential difference for bistatic radar is that range and Doppler shift depend on the transmitter as well as receiver trajectory. Incidental differences include the preparation of the images in a different (map projected) coordinate system and use of "squint" (i.e., imaging at nonzero rather than zero Doppler shift) to achieve the desired phase angle. Our approach to the problem is to reconstruct the time-of-observation, range, and Doppler shift of the image pixel by pixel in terms of rigorous geometric optics, then fit these functions with low-order polynomials accurate to a small fraction of a pixel. Range and Doppler estimated by using these polynomials can then be georeferenced rigorously on a new surface with an updated trajectory. This "semi-rigorous" approach (based on rigorous physics but involving fitting functions) speeds the calculation and avoids the need to manage both the original and adjusted trajectory data. We demonstrate the improvement in registration of the bistatic images for

  10. Second harmonic generation at the probe tip for background-free near-field optical imaging.

    PubMed

    Dong, Zhaogang; Soh, Yeng Chai

    2012-08-13

    Second harmonic generation (SHG) has been applied to reduce background signals in near-field optical imaging, but this technique is usually limited to samples with strong second-order nonlinear susceptibilities. To overcome this limitation, in this paper, we present a versatile background-free SHG configuration, where it utilizes the second-order nonlinear susceptibility of the probe which essentially functions as a near-field polarizer capable of filtering out the background signal component. In the theoretical analysis, we first model the probe-sample optical interactions at both the fundamental frequency and the second harmonic frequency by using the coupled dipole method. The theoretical model reveals that the proposed versatile background-free SHG configuration requires two conditions. The first condition is that the incident optical field must be s-polarized. The second condition is that the probe must be made of crystals from symmetry class 222, symmetry class 622, symmetry class 422, symmetry class 42m, symmetry class 43m or symmetry class 23. To demonstrate the effectiveness of the proposed versatile background-free SHG configuration, a probe made of deuterated potassium dideuterium phosphate (DKDP) crystal from symmetry class 42m is analyzed numerically. It is shown that when imaging samples with negligible second-order nonlinear susceptibilities, the proposed background-free SHG configuration improves the imaging contrast by more than one-order of magnitude as compared to all other imaging configurations. Moreover, we also investigate the dependence of its performance on other parameters, such as the probe-sample distance, the relative size between probe and sample, and the tilt angle of probe crystal. It is believed that the proposed configuration could be widely used to achieve high contrast near-field optical imaging.

  11. Ratiometric and near-infrared molecular probes for the detection and imaging of zinc ions.

    PubMed

    Carol, Priya; Sreejith, Sivaramapanicker; Ajayaghosh, Ayyappanpillai

    2007-03-05

    The detection and imaging of Zn2+ in biological samples are of paramount interest owing to the role of this cation in physiological functions. This is possible only with molecular probes that specifically bind to Zn2+ and result in changes in emission properties. A "turn-on" emission or shift in the emission color upon binding to Zn2+ should be ideal for in vivo imaging. In this context, ratiometric and near-IR probes are of particular interest. Therefore, in the area of chemosensors or molecular probes, the design of fluorophores that allow ratiometric sensing or imaging in the near-IR region is attracting the attention of chemists. The purpose of this Focus Review is to highlight recent developments in this area and stress the importance of further research for future applications.

  12. Amyloid-β Positron Emission Tomography Imaging Probes: A Critical Review

    PubMed Central

    Kepe, Vladimir; Moghbel, Mateen C.; Långström, Bengt; Zaidi, Habib; Vinters, Harry V.; Huang, Sung-Cheng; Satyamurthy, Nagichettiar; Doudet, Doris; Mishani, Eyal; Cohen, Robert M.; Høilund-Carlsen, Poul F.; Alavi, Abass; Barrio, Jorge R.

    2013-01-01

    The rapidly rising prevalence and cost of Alzheimer’s disease (AD) in recent decades has made the imaging of amyloid-β (Aβ) deposits the focus of intense research. Several amyloid imaging probes with purported specificity for Aβ plaques are currently at various stages of FDA approval. However, a number of factors appear to preclude these probes from clinical utilization. As the available “amyloid specific” PET imaging probes have failed to demonstrate diagnostic value and have shown limited utility for monitoring therapeutic interventions in humans, a debate on their significance has emerged. The aim of this review is to identify and discuss critically the scientific issues contributing to the extensive inconsistencies reported in the literature on their purported in vivo amyloid specificity and potential utilization in patients. PMID:23648516

  13. Ultrafast nanoscale imaging of surface charges by scanning resistive probe microscopy.

    SciTech Connect

    Ko, H.; Ryu, K.; Park, H.; Park, C.; Jeon, D.; Kim, Y. K.; Jung, J.; Min, D-K.; Kim, Y.; Lee, H. N.; Park, Y.; Shin, H.; Hong, S.

    2011-01-01

    Nanoscale manipulation of surface charges and their imaging are essential for understanding local electronic behaviors of polar materials and advanced electronic devices. Electrostatic force microscopy and Kelvin probe force microscopy have been extensively used to probe and image local surface charges responsible for electrodynamics and transport phenomena. However, they rely on the weak electric force modulation of cantilever that limits both spatial and temporal resolutions. Here we present a field effect transistor embedded probe that can directly image surface charges on a length scale of 25 nm and a time scale of less than 125 {mu}s. On the basis of the calculation of net surface charges in a 25 nm diameter ferroelectric domain, we could estimate the charge density resolution to be as low as 0.08 {mu}C/cm{sup 2}, which is equivalent to 1/20 electron per nanometer square at room temperature.

  14. Automated segmentation and geometrical modeling of the tricuspid aortic valve in 3D echocardiographic images.

    PubMed

    Pouch, Alison M; Wang, Hongzhi; Takabe, Manabu; Jackson, Benjamin M; Sehgal, Chandra M; Gorman, Joseph H; Gorman, Robert C; Yushkevich, Paul A

    2013-01-01

    The aortic valve has been described with variable anatomical definitions, and the consistency of 2D manual measurement of valve dimensions in medical image data has been questionable. Given the importance of image-based morphological assessment in the diagnosis and surgical treatment of aortic valve disease, there is considerable need to develop a standardized framework for 3D valve segmentation and shape representation. Towards this goal, this work integrates template-based medial modeling and multi-atlas label fusion techniques to automatically delineate and quantitatively describe aortic leaflet geometry in 3D echocardiographic (3DE) images, a challenging task that has been explored only to a limited extent. The method makes use of expert knowledge of aortic leaflet image appearance, generates segmentations with consistent topology, and establishes a shape-based coordinate system on the aortic leaflets that enables standardized automated measurements. In this study, the algorithm is evaluated on 11 3DE images of normal human aortic leaflets acquired at mid systole. The clinical relevance of the method is its ability to capture leaflet geometry in 3DE image data with minimal user interaction while producing consistent measurements of 3D aortic leaflet geometry.

  15. Development of novel nanocarrier-based near-infrared optical probes for in vivo tumor imaging.

    PubMed

    Shimizu, Yoichi; Temma, Takashi; Hara, Isao; Yamahara, Ryo; Ozeki, Ei-ichi; Ono, Masahiro; Saji, Hideo

    2012-03-01

    Optical imaging with near-infrared (NIR) fluorescent probes is a useful diagnostic technology for in vivo tumor detection. Our plan was to develop novel NIR fluorophore-micelle complex probes. IC7-1 and IC7-2 were synthesized as novel lipophilic NIR fluorophores, which were encapsulated in an amphiphilic polydepsipeptide micelle "lactosome". The fluorophore-micelle complexes IC7-1 lactosome and IC7-2 lactosome were evaluated as NIR fluorescent probes for in vivo tumor imaging. IC7-1 and IC7-2 were synthesized and then encapsulated in lactosomes. The optical properties of IC7-1, IC7-2, IC7-1 lactosome and IC7-2 lactosome were measured. IC7-1 lactosome and IC7-2 lactosome were administered to tumor-bearing mice, and fluorescence images were acquired for 48 h. IC7-1 and IC7-2 were successfully synthesized in 12% and 6.3% overall yield, and maximum emission wavelengths in chloroform were observed at 858 nm and 897 nm, respectively. Aqueous buffered solutions of IC7-1 lactosome and IC7-2 lactosome showed similar fluorescence spectra in chloroform and higher or comparable quantum yields and higher photostability compared with ICG. Both lactosome probes specifically visualized tumor tissue 6 h post-administration. IC7-1 lactosome and IC7-2 lactosome could be promising NIR probes for in vivo tumor imaging.

  16. NIR imaging the delivery of cathespin B probe to breast tumors

    NASA Astrophysics Data System (ADS)

    Zhou, Lanlan; Blessington, Dana M.; Zhang, Zhihong; Lindenmayer, Aristid E.; Tung, Ching H.; Weissleder, Ralph; Chance, Britton

    2003-07-01

    Proteases are involved in the invasion and metastasis of tumor cells. Cathepsin B overexpression has been shown in some neoplastic tissues. This study assesses the expression of Cathepsin B in the human fibrosarcoma (HT1080) in the mouse model by near-infrared (NIR) imaging. The nude mice were intravenously injected "a stealth probe" - an activable Cathepsin B sensing near-infrared fluorescence (NIRF) probe (24 hours before sacrifice) and the dye Cy5.5 (30 seconds before sacrifice). The animals were freeze-trapped and NIR images were obtained by the low temperature NIR scanner at the following excitation-emission wavelength pairs: 366, 450nm (NADH), 436, 520nm (FAD), and 670, 695nm (Cathepsin B probe). After imaging, the samples were submitted for histopathological evaluation. The tumor redox ratio NADH/(NADH+FAD) increased significantly because of the hypoxic state of tumor tissue with respect to normal tissue. The Cathepsin B probe was uniformly distributed throughout the tumor. This study indicated the efficient usage of the Cathepsin B probe in the molecular imaging for the detection of the early stage tumors.

  17. Image-Guided Radiotherapy for Left-Sided Breast Cancer Patients: Geometrical Uncertainty of the Heart

    SciTech Connect

    Topolnjak, Rajko; Borst, Gerben R.; Nijkamp, Jasper

    2012-03-15

    Purpose: To quantify the geometrical uncertainties for the heart during radiotherapy treatment of left-sided breast cancer patients and to determine and validate planning organ at risk volume (PRV) margins. Methods and Materials: Twenty-two patients treated in supine position in 28 fractions with regularly acquired cone-beam computed tomography (CBCT) scans for offline setup correction were included. Retrospectively, the CBCT scans were reconstructed into 10-phase respiration correlated four-dimensional scans. The heart was registered in each breathing phase to the planning CT scan to establish the respiratory heart motion during the CBCT scan ({sigma}{sub resp}). The average of the respiratory motion was calculated as the heart displacement error for a fraction. Subsequently, the systematic ({Sigma}), random ({sigma}), and total random ({sigma}{sub tot}={radical}({sigma}{sup 2}+{sigma}{sub resp}{sup 2})) errors of the heart position were calculated. Based on the errors a PRV margin for the heart was calculated to ensure that the maximum heart dose (D{sub max}) is not underestimated in at least 90% of the cases (M{sub heart} = 1.3{Sigma}-0.5{sigma}{sub tot}). All analysis were performed in left-right (LR), craniocaudal (CC), and anteroposterior (AP) directions with respect to both online and offline bony anatomy setup corrections. The PRV margin was validated by accumulating the dose to the heart based on the heart registrations and comparing the planned PRV D{sub max} to the accumulated heart D{sub max}. Results: For online setup correction, the cardiac geometrical uncertainties and PRV margins were N-Ary-Summation = 2.2/3.2/2.1 mm, {sigma} = 2.1/2.9/1.4 mm, and M{sub heart} = 1.6/2.3/1.3 mm for LR/CC/AP, respectively. For offline setup correction these were N-Ary-Summation = 2.4/3.7/2.2 mm, {sigma} = 2.9/4.1/2.7 mm, and M{sub heart} = 1.6/2.1/1.4 mm. Cardiac motion induced by breathing was {sigma}{sub resp} = 1.4/2.9/1.4 mm for LR/CC/AP. The PRV D{sub max

  18. Probing the inner gap of a newly imaged debris disk

    NASA Astrophysics Data System (ADS)

    Janson, Markus; Brandt, Tim; Thalmann, Christian; Bonnefoy, Mickael; Carson, Joe; McElwain, Michael; Wisniewski, John; Moro-Martin, Amaya; Buenzli, Esther; Currie, Thayne; Usuda, Tomonori; Tamura, Motohide

    2013-02-01

    HIP 79977 is a young ( 5-10 Myr) star in Upper Scorpius with an infrared excess implying the existence of a debris disk with an inner gap at 40 AU. We recently imaged this disk for the first time with Subaru/HiCIAO, using angular differential imaging (ADI). The images show hints of an inner gap, but a larger field rotation is required for accurately mapping this region of the disk with ADI, which requires a telescope in the Southern hemisphere due to the declination of the target. Here, we propose to use NICI for this purpose. The observations would give a better sense of the disk morphology and may reveal planetary companions in the system, if the gap is dynamically cleared.

  19. Real-Time Lane Region Detection Using a Combination of Geometrical and Image Features

    PubMed Central

    Cáceres Hernández, Danilo; Kurnianggoro, Laksono; Filonenko, Alexander; Jo, Kang Hyun

    2016-01-01

    Over the past few decades, pavement markings have played a key role in intelligent vehicle applications such as guidance, navigation, and control. However, there are still serious issues facing the problem of lane marking detection. For example, problems include excessive processing time and false detection due to similarities in color and edges between traffic signs (channeling lines, stop lines, crosswalk, arrows, etc.). This paper proposes a strategy to extract the lane marking information taking into consideration its features such as color, edge, and width, as well as the vehicle speed. Firstly, defining the region of interest is a critical task to achieve real-time performance. In this sense, the region of interest is dependent on vehicle speed. Secondly, the lane markings are detected by using a hybrid color-edge feature method along with a probabilistic method, based on distance-color dependence and a hierarchical fitting model. Thirdly, the following lane marking information is extracted: the number of lane markings to both sides of the vehicle, the respective fitting model, and the centroid information of the lane. Using these parameters, the region is computed by using a road geometric model. To evaluate the proposed method, a set of consecutive frames was used in order to validate the performance. PMID:27869657

  20. In vivo inflammation imaging using a CB2R-targeted near infrared fluorescent probe.

    PubMed

    Zhang, Shaojuan; Shao, Pin; Ling, Xiaoxi; Yang, Ling; Hou, Weizhou; Thorne, Steve H; Beaino, Wissam; Anderson, Carolyn J; Ding, Ying; Bai, Mingfeng

    2015-01-01

    Chronic inflammation is considered as a critical cause of a host of disorders, such as cancer, rheumatoid arthritis, atherosclerosis, and neurodegenerative diseases, although the exact mechanism is yet to be explored. Imaging tools that can specifically target inflammation are therefore important to help reveal the role of inflammation in disease progression, and allows for developing new therapeutic strategies to ultimately improve patient care. The purpose of this study was to develop a new in vivo inflammation imaging approach by targeting the cannabinoid receptor type 2 (CB2R), an emerging inflammation biomarker, using a unique near infrared (NIR) fluorescent probe. Herein, we report the first in vivo CB2R-targeted NIR inflammation imaging study using a synthetic fluorescent probe developed in our laboratory, NIR760-mbc94. In vitro binding assay and fluorescence microscopy study indicate NIR760-mbc94 specifically binds towards CB2R in mouse RAW264.7 macrophage cells. Furthermore, in vivo imaging was performed using a Complete Freund's Adjuvant (CFA)-induced inflammation mouse model. NIR760-mbc94 successfully identified inflamed tissues and the probe uptake was blocked by a CB2R ligand, SR144528. Additionally, immunofluorescence staining in cryosectioned tissues validated the NIR760-mbc94 uptake in inflamed tissues. In conclusion, this study reports the first in vivo CB2R-targeted inflammation imaging using an NIR fluorescent probe. Specific targeting of NIR760-mbc94 has been demonstrated in macrophage cells, as well as a CFA-induced inflammation mouse model. The combined evidence indicates that NIR760-mbc94 is a promising inflammation imaging probe. Moreover, in vivo CB2R-targeted fluorescence imaging may have potential in the study of inflammation-related diseases.

  1. New region-scalable discriminant and fitting energy functional for driving geometric active contours in medical image segmentation.

    PubMed

    Wang, Xuchu; Niu, Yanmin; Tan, Liwen; Zhang, Shao-Xiang

    2014-01-01

    We propose a novel region-based geometric active contour model that uses region-scalable discriminant and fitting energy functional for handling the intensity inhomogeneity and weak boundary problems in medical image segmentation. The region-scalable discriminant and fitting energy functional is defined to capture the image intensity characteristics in local and global regions for driving the evolution of active contour. The discriminant term in the model aims at separating background and foreground in scalable regions while the fitting term tends to fit the intensity in these regions. This model is then transformed into a variational level set formulation with a level set regularization term for accurate computation. The new model utilizes intensity information in the local and global regions as much as possible; so it not only handles better intensity inhomogeneity, but also allows more robustness to noise and more flexible initialization in comparison to the original global region and regional-scalable based models. Experimental results for synthetic and real medical image segmentation show the advantages of the proposed method in terms of accuracy and robustness.

  2. The development and evaluation of head probes for optical imaging of the infant head

    NASA Astrophysics Data System (ADS)

    Branco, Gilberto

    The objective of this thesis was to develop and evaluate optical imaging probes for mapping oxygenation and haemodynamic changes in the newborn infant brain. Two imaging approaches are being developed at University College London (UCL): optical topography (surface mapping of the cortex) and optical tomography (volume imaging). Both have the potential to provide information about the function of the normal brain and about a variety of neurophysiologies! abnormalities. Both techniques require an array of optical fibres/fibre bundles to be held in contact with the head, for periods of time from tens of seconds to an hour or more. The design of suitable probes must ensure the comfort and safety of the subject, and provide measurements minimally sensitive to external sources of light and patient motion. A series of prototype adaptable helmets were developed for optical tomography of the premature infant brain using the UCL 32-channel time-resolved system. They were required to attach 32 optical fibre bundles over the infant scalp, and were designed to accommodate infants with a variety of head shapes and sizes, aged between 24-weeks gestational age and term. Continual improvements to the helmet design were introduced following the evaluation of each prototype on infants in the hospital. Data were acquired to generate images revealing the concentration and oxygenation of blood in the brain, and the response of the brain to sensory stimulation. This part of the project also involved designing and testing new methods of acquiring calibration data using reference phantoms. The second focus of the project was the development of probes for use with the UCL frequency-multiplexed near-infrared topography system. This is being used to image functional activation in the infant cortex. A series of probes were developed and experiments were conducted to evaluate their sensitivity to patient motion and to compression of the probe. The probes have been used for a variety of

  3. Geometrical Reasoning in Wave Situations: The Case of Light Diffraction and Coherent Illumination Optical Imaging

    ERIC Educational Resources Information Center

    Maurines, Laurence

    2010-01-01

    This particular study is part of a research programme on the difficulties encountered by students when learning about wave phenomena in a three-dimensional medium in the absence or presence of obstacles. It focuses on how students reason in situations in which wave optics need to be used: diffraction of light by an aperture, imaging in the…

  4. Investigation of a MMP-2 Activity-Dependent Anchoring Probe for Nuclear Imaging of Cancer

    PubMed Central

    Temma, Takashi; Hanaoka, Hirofumi; Yonezawa, Aki; Kondo, Naoya; Sano, Kohei; Sakamoto, Takeharu; Seiki, Motoharu; Ono, Masahiro; Saji, Hideo

    2014-01-01

    Purpose Since matrix metalloproteinase-2 (MMP-2) is an important marker of tumor malignancy, we developed an original drug design strategy, MMP-2 activity dependent anchoring probes (MDAP), for use in MMP-2 activity imaging, and evaluated the usefulness of this probe in in vitro and in vivo experiments. Methods We designed and synthesized MDAP1000, MDAP3000, and MDAP5000, which consist of 4 independent moieties: RI unit (111In hydrophilic chelate), MMP-2 substrate unit (short peptide), anchoring unit (alkyl chain), and anchoring inhibition unit (polyethylene glycol (PEGn; where n represents the approximate molecular weight, n = 1000, 3000, and 5000). Probe cleavage was evaluated by chromatography after MMP-2 treatment. Cellular uptake of the probes was then measured. Radioactivity accumulation in tumor xenografts was evaluated after intravenous injection of the probes, and probe cleavage was evaluated in tumor homogenates. Results MDAP1000, MDAP3000, and MDAP5000 were cleaved by MMP-2 in a concentration-dependent manner. MDAP3000 pretreated with MMP-2 showed higher accumulation in tumor cells, and was completely blocked by additional treatment with an MMP inhibitor. MDAP3000 exhibited rapid blood clearance and a high tumor accumulation after intravenous injection in a rodent model. Furthermore, pharmacokinetic analysis revealed that MDAP3000 exhibited a considerably slow washout rate from tumors to blood. A certain fraction of cleaved MDAP3000 existed in tumor xenografts in vivo. Conclusions The results indicate the possible usefulness of our MDAP strategy for tumor imaging. PMID:25010662

  5. Highly Selective Two-Photon Fluorescent Probe for Ratiometric Sensing and Imaging Cysteine in Mitochondria.

    PubMed

    Niu, Weifen; Guo, Lei; Li, Yinhui; Shuang, Shaomin; Dong, Chuan; Wong, Man Shing

    2016-02-02

    A novel ratiometric mitochondrial cysteine (Cys)-selective two-photon fluorescence probe has been developed on the basis of a merocyanine as the fluorophore and an acrylate moiety as the biothiol reaction site. The biocompatible and photostable acrylate-functionalized merocyanine probe shows not only a mitochondria-targeting property but also highly selective detection and monitoring of Cys over other biothiols such as homocysteine (Hcy) and glutathione (GSH) and hydrogen sulfide (H2S) in live cells. In addition, this probe exhibits ratiometric fluorescence emission characteristics (F518/F452), which are linearly proportional to Cys concentrations in the range of 0.5-40 μM. More importantly, the probe and its released fluorophore, merocyanine, exhibit strong two-photon excited fluorescence (TPEF) with two-photon action cross-section (Φσmax) of 65.2 GM at 740 nm and 72.6 GM at 760 nm in aqueous medium, respectively, which is highly desirable for high contrast and brightness ratiometric two-photon fluorescence imaging of the living samples. The probe has been successfully applied to ratiometrically image and detect mitochondrial Cys in live cells and intact tissues down to a depth of 150 μm by two-photon fluorescence microscopy. Thus, this ratiometric two-photon fluorescent probe is practically useful for an investigation of Cys in living biological systems.

  6. Design and Synthesis of Near-infrared Fluorescent Probes for Imaging of Biological Nitroxyl

    PubMed Central

    Tan, Yi; Liu, Ruochuan; Zhang, Huatang; Peltier, Raoul; Lam, Yun-Wah; Zhu, Qing; Hu, Yi; Sun, Hongyan

    2015-01-01

    Nitroxyl (HNO), the reduced and protonated form of nitric oxide (NO), has recently been identified as an interesting and important signaling molecule in biological systems. However, research on its biosynthesis and bioactivities are hampered by the lack of versatile HNO detection methods applicable to living cells. In this report, two new near-infrared (NIR) probes were designed and synthesized for HNO imaging in living cells. One of the probes was found to display high sensitivity towards HNO, with up to 67-fold of fluorescence increment after reaction with HNO. The detection limit was determined to be as low as 0.043 μM. The probe displayed high selectivity towards HNO over other biologically related species including metal ions, reactive oxygen species, reactive nitrogen species and reactive sulfur species. Furthermore, the probe was shown to be suitable for imaging of exogenous and endogenous HNO in living cells. Interestingly, the probe was found to be mainly localized in lysosomes. We envision that the new NIR probe described here will serve as a useful tool for further elucidation of the intricate roles of HNO in living cells. PMID:26584764

  7. Multimodal nonlinear endo-microscopy probe design for high resolution, label-free intraoperative imaging

    PubMed Central

    Chen, Xu; Xu, Xiaoyun; McCormick, Daniel T.; Wong, Kelvin; Wong, Stephen T.C.

    2015-01-01

    We present a portable, multimodal, nonlinear endo-microscopy probe designed for intraoperative oncological imaging. Application of a four-wave mixing noise suppression scheme using dual wavelength wave plates (DWW) and a polarization-maintaining fiber improves tissue signal collection efficiency, allowing for miniaturization. The probe, with a small 14 mm transversal diameter, includes a customized miniaturized two-axis MEMS (micro-electromechanical system) raster scanning mirror and micro-optics with an illumination laser delivered by a polarization-maintaining fiber. The probe can potentially be integrated into the arms of a surgical robot, such as da Vinci robotic surgery system, due to its minimal cross sectional area. It has the ability to incorporate multiple imaging modalities including CARS (coherent anti-Stokes Raman scattering), SHG (second harmonic generation), and TPEF (two-photon excited fluorescence) in order to allow the surgeon to locate tumor cells within the context of normal stromal tissue. The resolution of the endo-microscope is experimentally determined to be 0.78 µm, a high level of accuracy for such a compact probe setup. The expected resolution of the as-built multimodal, nonlinear, endo-microscopy probe is 1 µm based on the calculation tolerance allocation using Monte-Carlo simulation. The reported probe is intended for use in laparoscopic or radical prostatectomy, including detection of tumor margins and avoidance of nerve impairment during surgery. PMID:26203361

  8. A fluorogenic probe for imaging protein S-nitrosylation in live cells.

    PubMed

    Shao, Shiyi; Chen, Bo; Cheng, Juan; Wang, Chengkun; Zhang, Yanli; Shao, Lingxiao; Hu, Yongzhou; Han, Yifeng; Han, Feng; Li, Xin

    2017-03-01

    S-nitrosylation is a posttranslational modification of protein cysteine residues leading to the formation of S-nitrosothiols and its detection is crucial to understanding of redox regulation and NO-based signaling. Prototypical detection methods for S-nitrosylation are always carried out ex situ. However, the reversible nature and the tendency of transnitrosylation highlight the necessity of its probing in intact live biological contexts. Herein we provide a fluorogenic chemical probe for the detection of S-nitrosylation in live endothelial cells. The probe is weakly emissive alone and becomes highly fluorescent only after undergoing a reaction with S-nitrosothiols in live cellular environments. This probe features high degrees of specificity and desirable sensitivity. Furthermore, it has been successfully applied to image the dynamic change of protein S-nitrosylation in live endothelial cells. The applicability of the probe in complex biological systems has been additionally verified by imaging a known target of S-nitrosylation, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), in live cells. Due to the versatility exemplified, this probe holds great promise for exploring the role of protein S-nitrosylation in the pathophysiological process of a variety of vascular diseases.

  9. An excited-state intramolecular photon transfer fluorescence probe for localizable live cell imaging of cysteine

    NASA Astrophysics Data System (ADS)

    Liu, Wei; Chen, Wen; Liu, Si-Jia; Jiang, Jian-Hui

    2017-03-01

    Small molecule probes suitable for selective and specific fluorescence imaging of some important but low-concentration intracellular reactive sulfur species such as cysteine (Cys) pose a challenge in chemical biology. We present a readily available, fast-response fluorescence probe CHCQ-Ac, with 2-(5‧-chloro-2-hydroxyl-phenyl)-6-chloro-4(3 H)-quinazolinone (CHCQ) as the fluorophore and acrylate group as the functional moiety, that enables high-selectivity and high-sensitivity for detecting Cys in both solution and biological system. After specifically reacted with Cys, the probe undergoes a seven-membered intramolecular cyclization and released the fluorophore CHCQ with excited-state intramolecular photon transfer effect. A highly fluorescent, insoluble aggregate was then formed to facilitate high-sensitivity and high-resolution imaging. The results showed that probe CHCQ-Ac affords a remarkably large Stokes shift and can detect Cys under physiological pH condition with no interference from other analytes. Moreover, this probe was proved to have excellent chemical stability, low cytotoxicity and good cell permeability. Our design of this probe provides a novel potential tool to visualize and localize cysteine in bioimaging of live cells that would greatly help to explore various Cys-related physiological and pathological cellular processes in cell biology and diagnostics.

  10. Benzothiadiazole Derivatives as Fluorescence Imaging Probes: Beyond Classical Scaffolds.

    PubMed

    Neto, Brenno A D; Carvalho, Pedro H P R; Correa, Jose R

    2015-06-16

    This Account describes the origins, features, importance, and trends of the use of fluorescent small-molecule 2,1,3-benzothiadiazole (BTD) derivatives as a new class of bioprobes applied to bioimaging analyses of several (live and fixed) cell types. BTDs have been successfully used as probes for a plethora of biological analyses for only a few years, and the impressive responses obtained by using this important class of heterocycle are fostering the development of new fluorescent BTDs and expanding the biological applications of such derivatives. The first use of a fluorescent small-molecule BTD derivative as a selective cellular probe dates back to 2010, and since then impressive advances have been described by us and others. The well-known limitations of classical scaffolds urged the development of new classes of bioprobes. Although great developments have been achieved by using classical scaffolds such as coumarins, BODIPYs, fluoresceins, rhodamines, cyanines, and phenoxazines, there is still much to be done, and BTDs aim to succeed where these dyes have shown their limitations. Important organelles and cell components such as nuclear DNA, mitochondria, lipid droplets, and others have already been successfully labeled by fluorescent small-molecule BTD derivatives. New technological systems that use BTDs as the fluorophores for bioimaging experiments have been described in recent scientific literature. The successful application of BTDs as selective bioprobes has led some groups to explore their potential for use in studying membrane pores or tumor cells under hypoxic conditions. Finally, BTDs have also been used as fluorescent tags to investigate the action mechanism of some antitumor compounds. The attractive photophysical data typically observed for π-extended BTD derivatives is fostering interest in the use of this new class of bioprobes. Large Stokes shifts, large molar extinction coefficients, high quantum yields, high stability when stored in solution or

  11. Imaging via complete cantilever dynamic detection: general dynamic mode imaging and spectroscopy in scanning probe microscopy

    NASA Astrophysics Data System (ADS)

    Somnath, Suhas; Collins, Liam; Matheson, Michael A.; Sukumar, Sreenivas R.; Kalinin, Sergei V.; Jesse, Stephen

    2016-10-01

    We develop and implement a multifrequency spectroscopy and spectroscopic imaging mode, referred to as general dynamic mode (GDM), that captures the complete spatially- and stimulus dependent information on nonlinear cantilever dynamics in scanning probe microscopy (SPM). GDM acquires the cantilever response including harmonics and mode mixing products across the entire broadband cantilever spectrum as a function of excitation frequency. GDM spectra substitute the classical measurements in SPM, e.g. amplitude and phase in lock-in detection. Here, GDM is used to investigate the response of a purely capacitively driven cantilever. We use information theory techniques to mine the data and verify the findings with governing equations and classical lock-in based approaches. We explore the dependence of the cantilever dynamics on the tip–sample distance, AC and DC driving bias. This approach can be applied to investigate the dynamic behavior of other systems within and beyond dynamic SPM. GDM is expected to be useful for separating the contribution of different physical phenomena in the cantilever response and understanding the role of cantilever dynamics in dynamic AFM techniques.

  12. Imaging via complete cantilever dynamic detection: General dynamic mode imaging and spectroscopy in scanning probe microscopy

    SciTech Connect

    Somnath, Suhas; Collins, Liam; Matheson, Michael A.; Sukumar, Sreenivas R.; Kalinin, Sergei V.; Jesse, Stephen

    2016-09-08

    We develop and implement a multifrequency spectroscopy and spectroscopic imaging mode, referred to as general dynamic mode (GDM), that captures the complete spatially- and stimulus dependent information on nonlinear cantilever dynamics in scanning probe microscopy (SPM). GDM acquires the cantilever response including harmonics and mode mixing products across the entire broadband cantilever spectrum as a function of excitation frequency. GDM spectra substitute the classical measurements in SPM, e.g. amplitude and phase in lock-in detection. Here, GDM is used to investigate the response of a purely capacitively driven cantilever. We use information theory techniques to mine the data and verify the findings with governing equations and classical lock-in based approaches. We explore the dependence of the cantilever dynamics on the tip–sample distance, AC and DC driving bias. This approach can be applied to investigate the dynamic behavior of other systems within and beyond dynamic SPM. In conclusion, GDM is expected to be useful for separating the contribution of different physical phenomena in the cantilever response and understanding the role of cantilever dynamics in dynamic AFM techniques.

  13. Imaging via complete cantilever dynamic detection: General dynamic mode imaging and spectroscopy in scanning probe microscopy

    DOE PAGES

    Somnath, Suhas; Collins, Liam; Matheson, Michael A.; ...

    2016-09-08

    We develop and implement a multifrequency spectroscopy and spectroscopic imaging mode, referred to as general dynamic mode (GDM), that captures the complete spatially- and stimulus dependent information on nonlinear cantilever dynamics in scanning probe microscopy (SPM). GDM acquires the cantilever response including harmonics and mode mixing products across the entire broadband cantilever spectrum as a function of excitation frequency. GDM spectra substitute the classical measurements in SPM, e.g. amplitude and phase in lock-in detection. Here, GDM is used to investigate the response of a purely capacitively driven cantilever. We use information theory techniques to mine the data and verify themore » findings with governing equations and classical lock-in based approaches. We explore the dependence of the cantilever dynamics on the tip–sample distance, AC and DC driving bias. This approach can be applied to investigate the dynamic behavior of other systems within and beyond dynamic SPM. In conclusion, GDM is expected to be useful for separating the contribution of different physical phenomena in the cantilever response and understanding the role of cantilever dynamics in dynamic AFM techniques.« less

  14. Long-term evaluation and cross-checking of two geometric calibrations of kV and MV imaging systems for Linacs.

    PubMed

    Chiu, Tsuicheng D; Yan, Yulong; Foster, Ryan; Mao, Weihua

    2015-07-08

    Geometric or mechanical accuracy of kV and MV imaging systems of two Varian TrueBeam linacs have been monitored by two geomertirc calibration systems, Varian IsoCal geometric calibration system and home-developed gQA system. Results of both systems are cross-checked and the long-term geometric stabilities of linacs are evaluated. Two geometric calibration methodologies have been used to assess kV and MV imaging systems and their coincidence periodically on two TrueBeam linacs for about one year. Both systems analyze kV or MV projection images of special designed phantoms to retrieve geometric parameters of the imaging systems. The isocenters — laser isocenter and centers of rotations of kV imager and EPID — are then calculated, based on results of multiple projections from different angles. Long-term calibration results from both systems are compared for cross-checking. There are 24 sessions of side-by-side calibrations performed by both systems on two TrueBeam linacs. All the disagreements of isocenters between two calibrations systems are less than 1 mm with ± 0.1 mm SD. Most of the large disagreements occurred in vertical direction (AP direction), with an averaged disagreement of 0.45 mm. The average disagreements of isocenters are 0.09 mm in other directions. Additional to long-term calibration monitoring, for the accuracy test, special tests were performed by misaligning QA phantoms on purpose (5 mm away from setup isocenter in AP, SI, and lateral directions) to test the liability performance of both systems with the known deviations. The errors are within 0.5 mm. Both geometric calibration systems, IsoCal and gQA, are capable of detecting geometric deviations of kV and MV imaging systems of linacs. The long-term evaluation also shows that the deviations of geometric parameters and the geometric accuracies of both linacs are small and very consistent during the one-year study period.

  15. Long-term evaluation and cross-checking of two geometric calibrations of kV and MV imaging systems for Linacs.

    PubMed

    Chiu, Tsuicheng D; Yan, Yulong; Foster, Ryan; Mao, Weihua

    2015-07-01

    Geometric or mechanical accuracy of kV and MV imaging systems of two Varian TrueBeam linacs have been monitored by two geomertirc calibration systems, Varian IsoCal geometric calibration system and home-developed gQA system. Results of both systems are cross-checked and the long-term geometric stabilities of linacs are evaluated. Two geometric calibration methodologies have been used to assess kV and MV imaging systems and their coincidence periodically on two TrueBeam linacs for about one year. Both systems analyze kV or MV projection images of special designed phantoms to retrieve geometric parameters of the imaging systems. The isocenters - laser isocenter and centers of rotations of kV imager and EPID - are then calculated, based on results of multiple projections from different angles. Long-term calibration results from both systems are compared for cross-checking. There are 24 sessions of side-by-side calibrations performed by both systems on two TrueBeam linacs. All the disagreements of isocenters between two calibrations systems are less than 1 mm with ± 0.1 mm SD. Most of the large disagreements occurred in vertical direction (AP direction), with an averaged disagreement of 0.45 mm. The average disagreements of isocenters are 0.09 mm in other directions. Additional to long-term calibration monitoring, for the accuracy test, special tests were performed by misaligning QA phantoms on purpose (5 mm away from setup isocenter in AP, SI, and lateral directions) to test the liability performance of both systems with the known deviations. The errors are within 0.5 mm. Both geometric calibration systems, IsoCal and gQA, are capable of detecting geometric deviations of kV and MV imaging systems of linacs. The long-term evaluation also shows that the deviations of geometric parameters and the geometric accuracies of both linacs are small and very consistent during the one-year study period. PACS number: 87.56.Fc.

  16. A Two-Photon Ratiometric Fluorescent Probe for Imaging Carboxylesterase 2 in Living Cells and Tissues.

    PubMed

    Jin, Qiang; Feng, Lei; Wang, Dan-Dan; Dai, Zi-Ru; Wang, Ping; Zou, Li-Wei; Liu, Zhi-Hong; Wang, Jia-Yue; Yu, Yang; Ge, Guang-Bo; Cui, Jing-Nan; Yang, Ling

    2015-12-30

    In this study, a two-photon ratiometric fluorescent probe NCEN has been designed and developed for highly selective and sensitive sensing of human carboxylesterase 2 (hCE2) based on the catalytic properties and substrate preference of hCE2. Upon addition of hCE2, the probe could be readily hydrolyzed to release 4-amino-1,8-naphthalimide (NAH), which brings remarkable red-shift in fluorescence (90 nm) spectrum. The newly developed probe exhibits good specificity, ultrahigh sensitivity, and has been successfully applied to determine the real activities of hCE2 in complex biological samples such as cell and tissue preparations. NCEN has also been used for two-photon imaging of intracellular hCE2 in living cells as well as in deep-tissues for the first time, and the results showed that the probe exhibited high ratiometric imaging resolution and deep-tissue imaging depth. All these findings suggested that this probe holds great promise for applications in bioimaging of endogenous hCE2 in living cells and in exploring the biological functions of hCE2 in complex biological systems.

  17. Multifunctional Concentric FRET-Quantum Dot Probes for Tracking and Imaging of Proteolytic Activity.

    PubMed

    Massey, Melissa; Li, Jia Jun; Algar, W Russ

    2017-01-01

    Proteolysis has many important roles in physiological regulation. It is involved in numerous cell signaling processes and the pathogenesis of many diseases, including cancers. Methods of visualizing and assaying proteolytic activity are therefore in demand. Förster resonance energy transfer (FRET) probes offer several advantages in this respect. FRET supports end-point or real-time measurements, does not require washing or separation steps, and can be implemented in various assay or imaging formats. In this chapter, we describe methodology for preparing self-assembled concentric FRET (cFRET) probes for multiplexed tracking and imaging of proteolytic activity. The cFRET probe comprises a green-emitting semiconductor quantum dot (QD) conjugated with multiple copies of two different peptide substrates for two target proteases. The peptide substrates are labeled with different fluorescent dyes, Alexa Fluor 555 and Alexa Fluor 647, and FRET occurs between the QD and both dyes, as well as between the two dyes. This design enables a single QD probe to track the activity of two proteases simultaneously. Fundamental cFRET theory is presented, and procedures for using the cFRET probe for quantitative measurement of the activity of two model proteases are given, including calibration, fluorescence plate reader or microscope imaging assays, and data analysis. Sufficient detail is provided for other researchers to adapt this method to their specific requirements and proteolytic systems of interest.

  18. Optimization of a gamma imaging probe for axillary sentinel lymph mapping

    NASA Astrophysics Data System (ADS)

    Georgiou, M.; Loudos, G.; Stratos, D.; Papadimitroulas, P.; Liakou, P.; Georgoulias, P.

    2012-09-01

    Sentinel lymph node (SLN) mapping is a technique for assessing whether early-stage invasive breast cancer has metastasized, thus determining prognosis and treatment options. SLN identification is achieved using the blue-dye and radioactive colloids techniques, which are sometimes combined with lymphoscintigraphy. Furthermore, intra-operative gamma acoustic probes, as well as gamma imaging probes are used during surgery. The purpose of this study is the construction of a gamma probe for sentinel lymph node imaging and its optimization in terms of sensitivity with respect to spatial resolution. The reference probe has small field of view (2.5 × 2.5 cm2) and is based on a position sensitive photomultiplier tube (PSPMT) coupled to a pixellated CsI(Tl) scintillator. Following experimental validation, we simulated the system using the GATE Monte Carlo toolkit (GATE v6.1) and modeled various collimator geometries, in order to evaluate their performance and propose the optimal configuration. The constraints of the proposed gamma imaging probe are i) sensitivity close to 2 cps/kBq and ii) spatial resolution equal to 6 mm at 2 cm source-to-collimator distance and ~ 10 mm at 5 cm. An integrated structure that achieves those requirements is a tungsten collimator with 2 × 2 mm2square holes, 16 mm thickness, 0.15 mm septa, where each CsI(Tl) 2 × 2 × 5 mm3 crystal pixel is placed inside the collimator.

  19. Continuously zoom imaging probe for the multi-resolution foveated laparoscope

    PubMed Central

    Qin, Yi; Hua, Hong

    2016-01-01

    In modern minimally invasive surgeries (MIS), standard laparoscopes suffer from the tradeoff between the spatial resolution and field of view (FOV). The inability of simultaneously acquiring high-resolution images for accurate operation and wide-angle overviews for situational awareness limits the efficiency and outcome of the MIS. A dual view multi-resolution foveated laparoscope (MRFL) which can simultaneously provide the surgeon with a high-resolution view as well as a wide-angle overview was proposed and demonstrated to have great potential for improving the MIS. Although experiment results demonstrated the high-magnification probe has an adequate magnification for viewing surgical details, the dual-view MRFL is limited to two fixed levels of magnifications. A fine adjustment of the magnification is highly desired for obtaining high resolution images with desired field coverage. In this paper, a high magnification probe with continuous zooming capability without any mechanical moving parts is demonstrated. By taking the advantages of two electrically tunable lenses, one for optical zoom and the other for image focus compensation, the optical magnification of the high-magnification probe varies from 2 × to 3 × compared with that of the wide-angle probe, while the focused object position stays the same as the wide-angle probe. The optical design and the tunable lens analysis are presented, followed by prototype demonstration. PMID:27446645

  20. Continuously zoom imaging probe for the multi-resolution foveated laparoscope.

    PubMed

    Qin, Yi; Hua, Hong

    2016-04-01

    In modern minimally invasive surgeries (MIS), standard laparoscopes suffer from the tradeoff between the spatial resolution and field of view (FOV). The inability of simultaneously acquiring high-resolution images for accurate operation and wide-angle overviews for situational awareness limits the efficiency and outcome of the MIS. A dual view multi-resolution foveated laparoscope (MRFL) which can simultaneously provide the surgeon with a high-resolution view as well as a wide-angle overview was proposed and demonstrated to have great potential for improving the MIS. Although experiment results demonstrated the high-magnification probe has an adequate magnification for viewing surgical details, the dual-view MRFL is limited to two fixed levels of magnifications. A fine adjustment of the magnification is highly desired for obtaining high resolution images with desired field coverage. In this paper, a high magnification probe with continuous zooming capability without any mechanical moving parts is demonstrated. By taking the advantages of two electrically tunable lenses, one for optical zoom and the other for image focus compensation, the optical magnification of the high-magnification probe varies from 2 × to 3 × compared with that of the wide-angle probe, while the focused object position stays the same as the wide-angle probe. The optical design and the tunable lens analysis are presented, followed by prototype demonstration.

  1. Note: Seesaw actuation of atomic force microscope probes for improved imaging bandwidth and displacement range

    SciTech Connect

    Torun, H.; Torello, D.; Degertekin, F. L.

    2011-08-15

    The authors describe a method of actuation for atomic force microscope (AFM) probes to improve imaging speed and displacement range simultaneously. Unlike conventional piezoelectric tube actuation, the proposed method involves a lever and fulcrum ''seesaw'' like actuation mechanism that uses a small, fast piezoelectric transducer. The lever arm of the seesaw mechanism increases the apparent displacement range by an adjustable gain factor, overcoming the standard tradeoff between imaging speed and displacement range. Experimental characterization of a cantilever holder implementing the method is provided together with comparative line scans obtained with contact mode imaging. An imaging bandwidth of 30 kHz in air with the current setup was demonstrated.

  2. Defect images by planar ECT probe of meander-mesh coils

    SciTech Connect

    Yamada, Sotoshi; Katou, Masaki; Iwahara, Masayoshi; Dawson, F.P.

    1996-09-01

    This paper presents results pertaining to image data obtained from a planar meander-mesh coupled coil type ECT probe. The image data makes it possible to detect not only the existence of a defect but also to extract detailed information regarding the nature of the defect, such as its position, shape, length, and direction. In order to recognize a defect distinctly, the authors have fabricated the high sensitive planar coil which can be used to image a 2-D representation of the ECT signal. The relationships between the image pattern and defect shape are discussed.

  3. Superresolution Imaging of Amyloid Fibrils with Binding-Activated Probes

    PubMed Central

    2013-01-01

    Protein misfolding into amyloid-like aggregates underlies many neurodegenerative diseases. Thus, insights into the structure and function of these amyloids will provide valuable information on the pathological mechanisms involved and aid in the design of improved drugs for treating amyloid-based disorders. However, determining the structure of endogenous amyloids at high resolution has been difficult. Here we employ binding-activated localization microscopy (BALM) to acquire superresolution images of α-synuclein amyloid fibrils with unprecedented optical resolution. We propose that BALM imaging can be extended to study the structure of other amyloids, for differential diagnosis of amyloid-related diseases and for discovery of drugs that perturb amyloid structure for therapy. PMID:23594172

  4. Cross-talk artefacts in Kelvin probe force microscopy imaging: A comprehensive study

    NASA Astrophysics Data System (ADS)

    Barbet, S.; Popoff, M.; Diesinger, H.; Deresmes, D.; Théron, D.; Mélin, T.

    2014-04-01

    We provide in this article a comprehensive study of the role of ac cross-talk effects in Kelvin Probe Force Microscopy (KPFM), and their consequences onto KPFM imaging. The dependence of KPFM signals upon internal parameters such as the cantilever excitation frequency and the projection angle of the KPFM feedback loop is reviewed, and compared with an analytical model. We show that ac cross-talks affect the measured KPFM signals as a function of the tip-substrate distance, and thus hamper the measurement of three-dimensional KPFM signals. The influence of ac cross-talks is also demonstrated onto KPFM images, in the form of topography footprints onto KPFM images, especially in the constant distance (lift) imaging mode. Our analysis is applied to unambiguously probe charging effects in tobacco mosaic viruses (TMVs) in ambient air. TMVs are demonstrated to be electrically neutral when deposited on silicon dioxide surfaces, but inhomogeneously negatively charged when deposited on a gold surface.

  5. Near-infrared fluorescent probes for imaging of amyloid plaques in Alzheimer׳s disease.

    PubMed

    Tong, Hongjuan; Lou, Kaiyan; Wang, Wei

    2015-01-01

    One of the early pathological hallmarks of Alzheimer׳s disease (AD) is the deposition of amyloid-β (Aβ) plaques in the brain. There has been a tremendous interest in the development of Aβ plaques imaging probes for early diagnosis of AD in the past decades. Optical imaging, particularly near-infrared fluorescence (NIRF) imaging, has emerged as a safe, low cost, real-time, and widely available technique, providing an attractive approach for in vivo detection of Aβ plaques among many different imaging techniques. In this review, we provide a brief overview of the state-of-the-art development of NIRF Aβ probes and their in vitro and in vivo applications with special focus on design strategies and optical, binding, and brain-kinetic properties.

  6. Cyanine-based probe\\tag-peptide pair fluorescence protein imaging and fluorescence protein imaging methods

    DOEpatents

    Mayer-Cumblidge, M. Uljana; Cao, Haishi

    2013-01-15

    A molecular probe comprises two arsenic atoms and at least one cyanine based moiety. A method of producing a molecular probe includes providing a molecule having a first formula, treating the molecule with HgOAc, and subsequently transmetallizing with AsCl.sub.3. The As is liganded to ethanedithiol to produce a probe having a second formula. A method of labeling a peptide includes providing a peptide comprising a tag sequence and contacting the peptide with a biarsenical molecular probe. A complex is formed comprising the tag sequence and the molecular probe. A method of studying a peptide includes providing a mixture containing a peptide comprising a peptide tag sequence, adding a biarsenical probe to the mixture, and monitoring the fluorescence of the mixture.

  7. All-optical pulse-echo ultrasound probe for intravascular imaging (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Colchester, Richard J.; Noimark, Sacha; Mosse, Charles A.; Zhang, Edward Z.; Beard, Paul C.; Parkin, Ivan P.; Papakonstantinou, Ioannis; Desjardins, Adrien E.

    2016-02-01

    High frequency ultrasound probes such as intravascular ultrasound (IVUS) and intracardiac echocardiography (ICE) catheters can be invaluable for guiding minimally invasive medical procedures in cardiology such as coronary stent placement and ablation. With current-generation ultrasound probes, ultrasound is generated and received electrically. The complexities involved with fabricating these electrical probes can result in high costs that limit their clinical applicability. Additionally, it can be challenging to achieve wide transmission bandwidths and adequate wideband reception sensitivity with small piezoelectric elements. Optical methods for transmitting and receiving ultrasound are emerging as alternatives to their electrical counterparts. They offer several distinguishing advantages, including the potential to generate and detect the broadband ultrasound fields (tens of MHz) required for high resolution imaging. In this study, we developed a miniature, side-looking, pulse-echo ultrasound probe for intravascular imaging, with fibre-optic transmission and reception. The axial resolution was better than 70 microns, and the imaging depth in tissue was greater than 1 cm. Ultrasound transmission was performed by photoacoustic excitation of a carbon nanotube/polydimethylsiloxane composite material; ultrasound reception, with a fibre-optic Fabry-Perot cavity. Ex vivo tissue studies, which included healthy swine tissue and diseased human tissue, demonstrated the strong potential of this technique. To our knowledge, this is the first study to achieve an all-optical pulse-echo ultrasound probe for intravascular imaging. The potential for performing all-optical B-mode imaging (2D and 3D) with virtual arrays of transmit/receive elements, and hybrid imaging with pulse-echo ultrasound and photoacoustic sensing are discussed.

  8. Broadband miniature optical ultrasound probe for high resolution vascular tissue imaging

    PubMed Central

    Colchester, Richard J.; Zhang, Edward Z.; Mosse, Charles A.; Beard, Paul C.; Papakonstantinou, Ioannis; Desjardins, Adrien E.

    2015-01-01

    An all-optical ultrasound probe for vascular tissue imaging was developed. Ultrasound was generated by pulsed laser illumination of a functionalized carbon nanotube composite coating on the end face of an optical fiber. Ultrasound was detected with a Fabry-Pérot (FP) cavity on the end face of an adjacent optical fiber. The probe diameter was < 0.84 mm and had an ultrasound bandwidth of ~20 MHz. The probe was translated across the tissue sample to create a virtual linear array of ultrasound transmit/receive elements. At a depth of 3.5 mm, the axial resolution was 64 µm and the lateral resolution was 88 µm, as measured with a carbon fiber target. Vascular tissues from swine were imaged ex vivo and good correspondence to histology was observed. PMID:25909031

  9. Reversible Fluorescent Probe for Selective Detection and Cell Imaging of Oxidative Stress Indicator Bisulfite.

    PubMed

    Zhang, Yajiao; Guan, Lingmei; Yu, Huan; Yan, Yehan; Du, Libo; Liu, Yang; Sun, Mingtai; Huang, Dejian; Wang, Suhua

    2016-04-19

    In this paper, we report a benzothiazole-functionalized cyanine fluorescence probe and demonstrate that it is selectively reactive to bisulfite, an intermediate indicator for oxidative stress. The selective reaction can be monitored by distinct ratiometric fluorescence variation favorable for cell imaging and visualization. The original probe can be regenerated in high yield through the elimination of bisulfite from the product by peroxides such as hydrogen peroxide, accompanied by fluorescence turning on at 590 nm, showing a potential application for the detection of peroxides. We successfully applied this probe for fluorescence imaging of bisulfite in cancer cells (MCF-7) treated with bisulfite and hydrogen peroxide as well as a selective detection limit of 0.34 μM bisulfite in aqueous solution.

  10. Fluorescence microscopy studies of a peripheral-benzodiazepine-receptor-targeted molecular probe for brain tumor imaging

    NASA Astrophysics Data System (ADS)

    Marcu, Laura; Vernier, P. Thomas; Manning, H. Charles; Salemi, Sarah; Li, Aimin; Craft, Cheryl M.; Gundersen, Martin A.; Bornhop, Darryl J.

    2003-10-01

    This study investigates the potential of a new multi-modal lanthanide chelate complex for specifically targeting brain tumor cells. We report here results from ongoing studies of up-take, sub-cellular localization and binding specificity of this new molecular imaging probe. Fluorescence microscopy investigations in living rat C6 glioma tumor cells demonstrate that the new imaging agent has affinity for glioma cells and binds to mitochondria.

  11. Hand-held probe based optical imaging system towards breast cancer diagnosis

    NASA Astrophysics Data System (ADS)

    Ge, Jiajia; Jayachandran, Bhavani; Regalado, Steven; Zhu, Banghe; Godavarty, Anuradha

    2007-02-01

    Near-infrared (NIR) optical imaging is an emerging noninvasive modality for breast cancer diagnosis. However, the currently available optical imaging systems towards tomography studies are limited either by instrument portability, patient comfort, or flexibility to image any given tissue volume. Herein, a hand-held based optical imaging system is developed such that it can possibly overcome some of the above limitations. The unique features of the hand-held optical probe are: (i) to perform simultaneous multiple point illumination and detection, thus decreasing the total imaging time and improving the overall signal strength; (ii) to adapt to the contour of tissue surface, thus decreasing the leakage of excitation and emission signal at contact surface; and (iii) to obtain trans-illumination measurements apart from reflectance measurements, thus improving the depth information. The increased detected signal strength as well as total interrogated tissue volume is demonstrated by simulation studies (i.e. forward model) over a 5×10×10 cc slab phantom. The appropriate number and layout of the source and detection points on the probe head is determined and the hand-held optical probe is developed. A frequency-domain ICCD (intensified charge coupled device) detection system, which allows simultaneous multiple points detection, is developed and coupled to the hand-held probe in order to perform fluorescence-enhanced optical imaging of tissue phantoms. In the future, imaging of homogenous liquid phantoms will be used for the assessment of this hand-held system, followed by extensive imaging studies on different phantoms types under various experimental conditions.

  12. A new paramagnetically shifted imaging probe for MRI

    PubMed Central

    Senanayake, P. Kanthi; Rogers, Nicola J.; Finney, Katie‐Louise N.A.; Harvey, Peter; Funk, Alexander M.; Wilson, J. Ian; O'Hogain, Dara; Maxwell, Ross; Parker, David

    2016-01-01

    Purpose To develop and characterize a new paramagnetic contrast agent for molecular imaging by MRI. Methods A contrast agent was developed for direct MRI detection through the paramagnetically shifted proton magnetic resonances of two chemically equivalent tert‐butyl reporter groups within a dysprosium(III) complex. The complex was characterized in phantoms and imaged in physiologically intact mice at 7 Tesla (T) using three‐dimensional (3D) gradient echo and spectroscopic imaging (MRSI) sequences to measure spatial distribution and signal frequency. Results The reporter protons reside ∼6.5 Å from the paramagnetic center, resulting in fast T 1 relaxation (T 1 = 8 ms) and a large paramagnetic frequency shift exceeding 60 ppm. Fast relaxation allowed short scan repetition times with high excitation flip angle, resulting in high sensitivity. The large dipolar shift allowed direct frequency selective excitation and acquisition of the dysprosium(III) complex, independent of the tissue water signal. The biokinetics of the complex were followed in vivo with a temporal resolution of 62 s following a single, low‐dose intravenous injection. The lower concentration limit for detection was ∼23 μM. Through MRSI, the temperature dependence of the paramagnetic shift (0.28 ppm.K−1) was exploited to examine tissue temperature variation. Conclusions These data demonstrate a new MRI agent with the potential for physiological monitoring by MRI. Magn Reson Med 77:1307–1317, 2017. © 2016 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. PMID:26922918

  13. A Plasmonic Gold Nanostar Theranostic Probe for In Vivo Tumor Imaging and Photothermal Therapy

    PubMed Central

    Liu, Yang; Ashton, Jeffrey R.; Moding, Everett J.; Yuan, Hsiangkuo; Register, Janna K.; Fales, Andrew M.; Choi, Jaeyeon; Whitley, Melodi J.; Zhao, Xiaoguang; Qi, Yi; Ma, Yan; Vaidyanathan, Ganesan; Zalutsky, Michael R.; Kirsch, David G.; Badea, Cristian T.; Vo-Dinh, Tuan

    2015-01-01

    Nanomedicine has attracted increasing attention in recent years, because it offers great promise to provide personalized diagnostics and therapy with improved treatment efficacy and specificity. In this study, we developed a gold nanostar (GNS) probe for multi-modality theranostics including surface-enhanced Raman scattering (SERS) detection, x-ray computed tomography (CT), two-photon luminescence (TPL) imaging, and photothermal therapy (PTT). We performed radiolabeling, as well as CT and optical imaging, to investigate the GNS probe's biodistribution and intratumoral uptake at both macroscopic and microscopic scales. We also characterized the performance of the GNS nanoprobe for in vitro photothermal heating and in vivo photothermal ablation of primary sarcomas in mice. The results showed that 30-nm GNS have higher tumor uptake, as well as deeper penetration into tumor interstitial space compared to 60-nm GNS. In addition, we found that a higher injection dose of GNS can increase the percentage of tumor uptake. We also demonstrated the GNS probe's superior photothermal conversion efficiency with a highly concentrated heating effect due to a tip-enhanced plasmonic effect. In vivo photothermal therapy with a near-infrared (NIR) laser under the maximum permissible exposure (MPE) led to ablation of aggressive tumors containing GNS, but had no effect in the absence of GNS. This multifunctional GNS probe has the potential to be used for in vivo biosensing, preoperative CT imaging, intraoperative detection with optical methods (SERS and TPL), as well as image-guided photothermal therapy. PMID:26155311

  14. Temperature imaging by 1H NMR and suppression of convection in NMR probes

    PubMed

    Hedin; Furo

    1998-03-01

    A simple arrangement for suppressing convection in NMR probes is tested experimentally. Diffusion experiments are used to determine the onset of convection and 1H temperature imaging helps to rationalize the somewhat surprising results. A convenient new 1H NMR thermometer, CH2Br2 dissolved in a nematic thermotropic liquid crystal, is presented. Copyright 1998 Academic Press.

  15. A Plasmonic Gold Nanostar Theranostic Probe for In Vivo Tumor Imaging and Photothermal Therapy.

    PubMed

    Liu, Yang; Ashton, Jeffrey R; Moding, Everett J; Yuan, Hsiangkuo; Register, Janna K; Fales, Andrew M; Choi, Jaeyeon; Whitley, Melodi J; Zhao, Xiaoguang; Qi, Yi; Ma, Yan; Vaidyanathan, Ganesan; Zalutsky, Michael R; Kirsch, David G; Badea, Cristian T; Vo-Dinh, Tuan

    2015-01-01

    Nanomedicine has attracted increasing attention in recent years, because it offers great promise to provide personalized diagnostics and therapy with improved treatment efficacy and specificity. In this study, we developed a gold nanostar (GNS) probe for multi-modality theranostics including surface-enhanced Raman scattering (SERS) detection, x-ray computed tomography (CT), two-photon luminescence (TPL) imaging, and photothermal therapy (PTT). We performed radiolabeling, as well as CT and optical imaging, to investigate the GNS probe's biodistribution and intratumoral uptake at both macroscopic and microscopic scales. We also characterized the performance of the GNS nanoprobe for in vitro photothermal heating and in vivo photothermal ablation of primary sarcomas in mice. The results showed that 30-nm GNS have higher tumor uptake, as well as deeper penetration into tumor interstitial space compared to 60-nm GNS. In addition, we found that a higher injection dose of GNS can increase the percentage of tumor uptake. We also demonstrated the GNS probe's superior photothermal conversion efficiency with a highly concentrated heating effect due to a tip-enhanced plasmonic effect. In vivo photothermal therapy with a near-infrared (NIR) laser under the maximum permissible exposure (MPE) led to ablation of aggressive tumors containing GNS, but had no effect in the absence of GNS. This multifunctional GNS probe has the potential to be used for in vivo biosensing, preoperative CT imaging, intraoperative detection with optical methods (SERS and TPL), as well as image-guided photothermal therapy.

  16. Non-invasive Imaging of Idiopathic Pulmonary Fibrosis Using Cathepsin Protease Probes.

    PubMed

    Withana, Nimali P; Ma, Xiaowei; McGuire, Helen M; Verdoes, Martijn; van der Linden, Wouter A; Ofori, Leslie O; Zhang, Ruiping; Li, Hao; Sanman, Laura E; Wei, Ke; Yao, Shaobo; Wu, Peilin; Li, Fang; Huang, Hui; Xu, Zuojun; Wolters, Paul J; Rosen, Glenn D; Collard, Harold R; Zhu, Zhaohui; Cheng, Zhen; Bogyo, Matthew

    2016-01-22

    Idiopathic pulmonary fibrosis (IPF) is a lethal, chronic, progressive disease characterized by formation of scar tissue within the lungs. Because it is a disease of unknown etiology, it is difficult to diagnose, to predict disease course and to devise treatment strategies. Recent evidence suggests that activated macrophages play key roles in the pathology of IPF. Therefore, imaging probes that specifically recognize these pools of activated immune cells could provide valuable information about how these cells contribute to the pathobiology of the disease. Here we demonstrate that cysteine cathepsin-targeted imaging probes can be used to monitor the contribution of macrophages to fibrotic disease progression in the bleomycin-induced murine model of pulmonary fibrosis. Furthermore, we show that the probes highlight regions of macrophage involvement in fibrosis in human biopsy tissues from IPF patients. Finally, we present first-in-human results demonstrating non-invasive imaging of active cathepsins in fibrotic lesions of patients with IPF. Together, our findings validate small molecule cysteine cathepsin probes for clinical PET imaging and suggest that they have the potential to be used to generate mechanistically-informative molecular information regarding cellular drivers of IPF disease severity and progression.

  17. Exoplanet Direct Imaging: Coronagraph Probe Mission Study EXO-C

    NASA Technical Reports Server (NTRS)

    Stapelfeldt, Karl R.

    2013-01-01

    Flagship mission for spectroscopy of ExoEarths is a long-term priority for space astrophysics (Astro2010). Requires 10(exp 10) contrast at 3 lambda/D separation, ( (is) greater than 10,000 times beyond HST performance) and large telescope (is) greater than 4m aperture. Big step. Mission for spectroscopy of giant planets and imaging of disks requires 10(exp 9) contrast at 3 lambda/D (already demonstrated in lab) and (is) approximately 1.5m telescope. Should be much more affordable, good intermediate step.Various PIs have proposed many versions of the latter mission 17 times since 1999; no unified approach.

  18. Probing peroxisome dynamics and biogenesis by fluorescence imaging.

    PubMed

    Jauregui, Miluska; Kim, Peter K

    2014-03-03

    Peroxisomes are the most recently discovered classical organelles, and only lately have their diverse functions been truly recognized. Peroxisomes are highly dynamic structures, changing both morphologically and in number in response to both extracellular and intracellular signals. This metabolic organelle came to prominence due to the many genetic disorders caused by defects in its biogenesis or enzymatic functions. There is now growing evidence that suggests peroxisomes are involved in lipid biosynthesis, innate immunity, redox homeostasis, and metabolite scavenging, among other functions. Therefore, it is important to have available suitable methods and techniques to visualize and quantify peroxisomes in response to various cellular signals. This unit includes a number of protocols that will enable researchers to image, qualify, and quantify peroxisome numbers and morphology-with both steady-state and time-lapse imaging using mammalian cells. The use of photoactivatable fluorescent proteins to detect and measure peroxisome biogenesis is also described. Altogether, the protocols described here will facilitate understanding of the dynamic changes that peroxisomes undergo in response to various cellular signals.

  19. Geometric Methods for ATR: Shape Spaces, Metrics, Object/Image Relations, and Shapelets

    DTIC Science & Technology

    2007-09-30

    and only if Kr - 4 C L r - 3 C H r - l C r This fact and the incidence relations given in Theorem I, §5, Chapter VII of Hodge and Pedoe [4] give us our...Springer-Verlag, 1992. 4. W.V.D. Hodge and D. Pedoe , Methods of Algebraic Geometry, nos. 1, 2, and 3, in Mathematical Library Series, Cambridge...and Pedoe [5] give us our object-image relations. Theorem 2.4. Let Pi = (xi, yi, zi), 1 < i < r be an object configuration with corresponding matrix M

  20. Dosimetric and geometric evaluation of a hybrid strategy of offline adaptive planning and online image guidance for prostate cancer radiotherapy.

    PubMed

    Liu, Han; Wu, Qiuwen

    2011-08-07

    For prostate cancer patients, online image-guided (IG) radiotherapy has been widely used in clinic to correct the translational inter-fractional motion at each treatment fraction. For uncertainties that cannot be corrected online, such as rotation and deformation of the target volume, margins are still required to be added to the clinical target volume (CTV) for the treatment planning. Offline adaptive radiotherapy has been implemented to optimize the treatment for each individual patient based on the measurements at early stages of treatment process. It has been shown that offline adaptive radiotherapy can effectively reduce the required margin. Recently a hybrid strategy of offline adaptive replanning and online IG was proposed and the geometric evaluation was performed. It was found that the planning margins can further be reduced by 1-2 mm compared to online IG only strategy. The purpose of this study was to investigate the dosimetric benefits of such a hybrid strategy on the target and organs at risk. A total of 420 repeated helical computed tomography scans from 28 patients were included in the study. Both low-risk patients (LRP, CTV = prostate) and intermediate-risk patients (IRP, CTV = prostate + seminal vesicles, SV) were included in the simulation. Two registration methods, based on center-of-mass shift of prostate only and prostate plus SV, were performed for IRP. The intensity-modulated radiotherapy was used in the simulation. Criteria on both cumulative and fractional doses were evaluated. Furthermore, the geometric evaluation was extended to investigate the optimal number of fractions necessary to construct the internal target volume (ITV) for the hybrid strategy. The dosimetric margin improvement was smaller than its geometric counterpart and was in the range of 0-1 mm. The optimal number of fractions necessary for the ITV construction is 2 for LRPs and 3-4 for IRPs in a hypofractionation protocol. A new cumulative index of target volume was proposed

  1. Dosimetric and geometric evaluation of a hybrid strategy of offline adaptive planning and online image guidance for prostate cancer radiotherapy

    NASA Astrophysics Data System (ADS)

    Liu, Han; Wu, Qiuwen

    2011-08-01

    For prostate cancer patients, online image-guided (IG) radiotherapy has been widely used in clinic to correct the translational inter-fractional motion at each treatment fraction. For uncertainties that cannot be corrected online, such as rotation and deformation of the target volume, margins are still required to be added to the clinical target volume (CTV) for the treatment planning. Offline adaptive radiotherapy has been implemented to optimize the treatment for each individual patient based on the measurements at early stages of treatment process. It has been shown that offline adaptive radiotherapy can effectively reduce the required margin. Recently a hybrid strategy of offline adaptive replanning and online IG was proposed and the geometric evaluation was performed. It was found that the planning margins can further be reduced by 1-2 mm compared to online IG only strategy. The purpose of this study was to investigate the dosimetric benefits of such a hybrid strategy on the target and organs at risk. A total of 420 repeated helical computed tomography scans from 28 patients were included in the study. Both low-risk patients (LRP, CTV = prostate) and intermediate-risk patients (IRP, CTV = prostate + seminal vesicles, SV) were included in the simulation. Two registration methods, based on center-of-mass shift of prostate only and prostate plus SV, were performed for IRP. The intensity-modulated radiotherapy was used in the simulation. Criteria on both cumulative and fractional doses were evaluated. Furthermore, the geometric evaluation was extended to investigate the optimal number of fractions necessary to construct the internal target volume (ITV) for the hybrid strategy. The dosimetric margin improvement was smaller than its geometric counterpart and was in the range of 0-1 mm. The optimal number of fractions necessary for the ITV construction is 2 for LRPs and 3-4 for IRPs in a hypofractionation protocol. A new cumulative index of target volume was proposed

  2. A new near-infrared absorption and fluorescent probe based on bombesin for molecular imaging

    NASA Astrophysics Data System (ADS)

    Kujala, Naresh; Zhai, Huifang; Smith, Charles; Prasanphanich, Adam; Sieckman, Gary; Hoffman, Timothy; Volkert, Wynn; Ma, Lixin; Yu, Ping

    2009-02-01

    We have developed a series of new dye bombesin conjugates for site-specific absorption and fluorescence imaging of human prostate and breast cancers. Bombesin (BBN), an amphibian analog to the endogenous ligand, binds to the gastrin releasing peptide (GRP) receptors with high specificity and affinity. Previously, we developed an Alexa Fluor 680-GGG-BBN peptide conjugate which demonstrated high binding affinity and specificity for breast cancer cells in the in vitro and in vivo tests (Ref: Ma et al., Molecular Imaging, vol. 6, no. 3, 2007: 171-180). This probe can not be used as an absorption probe in near-infrared imaging because its absorption peak is in the visible wavelength range. In addition, site specific longer wavelength fluorescent probe is desired for in vivo molecular imaging because long wavelength photons penetrate deeper into tissue. The new absorption and fluorescent probe we developed is based on the last eight-residues of BBN, -Q-W-A-V-G-H-L-M-(NH2), and labeled with AlexaFluor750 through a chemical linker, beta-alanine. The new probe, Alexa Fluor 750-BetaAla-BBN(7-14)NH2, exhibits optimal pharmacokinetics for specific targeting and optical imaging of the GRP receptor over-expressing cancer cells. Absorption spectrum has been measured and showed absorption peaks at 690nm, 720nm and 735nm. Fluorescent band is located at 755nm. In vitro and in vivo investigations have demonstrated the effectiveness of the new conjugates to specifically target human cancer cells overexpressing GRP receptors and tumor xenografts in severely compromised immunodeficient mouse model.

  3. LANDSAT-D thematic mapper image dimensionality reduction and geometric correction accuracy

    NASA Technical Reports Server (NTRS)

    Ford, G. E. (Principal Investigator)

    1983-01-01

    When principal component analysis of a subscene of a section of the Sacramento River showed lower correlation among the TM spectral components that were observed for the MSS spectral components, principal component analysis was applied to a LANDSAT 2 MSS subscene of the same area for comparison purposes. Correlation coefficient matrices indicate the pairwise similarity and correlation of the data for the spectral components. The principal components transformation matrix, indicates the weights applied to the original components to generate the transformed components. The first two TM components can be described as visible and near infrared. For the MSS data, the first transformed component is roughly the average of the four original components. The second transformed component is roughly the difference between the visible and infrared components. Tables show that 97.0% of the variance in an MSS image is contained in only two transformed components.

  4. Imaging of homeostatic, neoplastic, and injured tissues by HA-based probes.

    PubMed

    Veiseh, Mandana; Breadner, Daniel; Ma, Jenny; Akentieva, Natalia; Savani, Rashmin C; Harrison, Rene; Mikilus, David; Collis, Lisa; Gustafson, Stefan; Lee, Ting-Yim; Koropatnick, James; Luyt, Leonard G; Bissell, Mina J; Turley, Eva A

    2012-01-09

    An increase in hyaluronan (HA) synthesis, cellular uptake, and metabolism occurs during the remodeling of tissue microenvironments following injury and during disease processes such as cancer. We hypothesized that multimodality HA-based probes selectively target and detectably accumulate at sites of high HA metabolism, thus providing a flexible imaging strategy for monitoring disease and repair processes. Kinetic analyses confirmed favorable available serum levels of the probe following intravenous (i.v.) or subcutaneous (s.c.) injection. Nuclear (technetium-HA, (99m)Tc-HA, and iodine-HA, (125)I-HA), optical (fluorescent Texas Red-HA, TR-HA), and magnetic resonance (gadolinium-HA, Gd-HA) probes imaged liver ((99m)Tc-HA), breast cancer cells/xenografts (TR-HA, Gd-HA), and vascular injury ((125)I-HA, TR-HA). Targeting of HA probes to these sites appeared to result from selective HA receptor-dependent localization. Our results suggest that HA-based probes, which do not require polysaccharide backbone modification to achieve favorable half-life and distribution, can detect elevated HA metabolism in homeostatic, injured, and diseased tissues.

  5. Background-free in-vivo Imaging of Vitamin C using Time-gateable Responsive Probe

    PubMed Central

    Song, Bo; Ye, Zhiqing; Yang, Yajie; Ma, Hua; Zheng, Xianlin; Jin, Dayong; Yuan, Jingli

    2015-01-01

    Sensitive optical imaging of active biomolecules in the living organism requires both a molecular probe specifically responsive to the target and a high-contrast approach to remove the background interference from autofluorescence and light scatterings. Here, a responsive probe for ascorbic acid (vitamin C) has been developed by conjugating two nitroxide radicals with a long-lived luminescent europium complex. The nitroxide radical withholds the probe on its “off” state (barely luminescent), until the presence of vitamin C will switch on the probe by forming its hydroxylamine derivative. The probe showed a linear response to vitamin C concentration with a detection limit of 9.1 nM, two orders of magnitude lower than that achieved using electrochemical methods. Time-gated luminescence microscopy (TGLM) method has further enabled real-time, specific and background-free monitoring of cellular uptake or endogenous production of vitamin C, and mapping of vitamin C in living Daphnia magna. This work suggests a rational design of lanthanide complexes for background-free small animal imaging of biologically functional molecules. PMID:26373894

  6. Design optimization and performances of an intraoperative positron imaging probe for radioguided cancer surgery

    NASA Astrophysics Data System (ADS)

    Spadola, S.; Verdier, M.-A.; Pinot, L.; Esnault, C.; Dinu, N.; Charon, Y.; Duval, M.-A.; Ménard, L.

    2016-12-01

    Extent and accuracy of surgical resection is a crucial step in operable tumor therapy. Emergence of promising specific tumor-seeking agents labeled with positron emitters is giving rise to a renewed interest for radioguided surgery using beta probes. Beta detection, due to the particle short range, allows a more sensitive and accurate tumor localization compared to gamma radiotracers. In that context, we are currently developing an intraoperative positron imaging probe using SiPM photosensors to perform tumor localization and post-operative control of the surgical cavity. Because compactness is a key feature when trying to detect positron emitters with high sensitivity in small surgical cavities, we chose to study the simplest detector design based on the use of a very thin organic scintillator coupled to the photosensor. Different designs of the positron imaging probe, including scintillator material and thickness, light spreading window and optical reflector, were investigated with Monte-Carlo simulations and measurements. Their impact on the probe performances were optimized in terms of positron sensitivity, gamma rays background noise contamination, spatial resolution and bias and uniformity. The ability of the probes to detect small radiolabeled tumors was also investigated by simulating different phantom uptake configurations.

  7. Imaging of Homeostatic, Neoplastic, and Injured Tissues by HA-Based Probes

    PubMed Central

    Veiseh, Mandana; Breadner, Daniel; Ma, Jenny; Akentieva, Natalia; Savani, Rashmin C; Harrison, Rene; Mikilus, David; Collis, Lisa; Gustafson, Stefan; Lee, Ting-Yim; Koropatnick, James; Luyt, Leonard G.; Bissell, Mina J.; Turley, Eva A.

    2013-01-01

    An increase in hyaluronan (HA) synthesis, cellular uptake, and metabolism occurs during the remodeling of tissue microenvironments following injury and during disease processes such as cancer. We hypothesized that multimodality HA-based probes selectively target and detectably accumulate at sites of high HA metabolism, thus providing a flexible imaging strategy for monitoring disease and repair processes. Kinetic analyses confirmed favorable available serum levels of the probe following intravenous (i.v.) or subcutaneous (s.c.) injection. Nuclear (technetium-HA, 99mTc-HA, and iodine-HA, 125I-HA), optical (fluorescent Texas Red-HA, TR-HA), and magnetic resonance (gadolinium-HA, Gd-HA) probes imaged liver (99mTc-HA), breast cancer cells/xenografts (TR-HA, Gd-HA), and vascular injury (125I-HA, TR-HA). Targeting of HA probes to these sites appeared to result from selective HA receptor-dependent localization. Our results suggest that HA-based probes, which do not require polysaccharide backbone modification to achieve favorable half-life and distribution, can detect elevated HA metabolism in homeostatic, injured, and diseased tissues. PMID:22066590

  8. Frequency Domain Fluorescent Molecular Tomography and Molecular Probes for Small Animal Imaging

    NASA Astrophysics Data System (ADS)

    Kujala, Naresh Gandhi

    Fluorescent molecular tomography (FMT) is a noninvasive biomedical optical imaging that enables 3-dimensional quantitative determination of fluorochromes distributed in biological tissues. There are three methods for imaging large volume tissues based on different light sources: (a) using a light source of constant intensity, through a continuous or constant wave, (b) using a light source that is intensity modulated with a radio frequency (RF), and (c) using ultrafast pulses in the femtosecond range. In this study, we have developed a frequency domain fluorescent molecular tomographic system based on the heterodyne technique, using a single source and detector pair that can be used for small animal imaging. In our system, the intensity of the laser source is modulated with a RF frequency to produce a diffuse photon density wave in the tissue. The phase of the diffuse photon density wave is measured by comparing the reference signal with the signal from the tissue using a phasemeter. The data acquisition was performed by using a Labview program. The results suggest that we can measure the phase change from the heterogeneous inside tissue. Combined with fiber optics and filter sets, the system can be used to sensitively image the targeted fluorescent molecular probes, allowing the detection of cancer at an early stage. We used the system to detect the tumor-targeting molecular probe Alexa Fluor 680 and Alexa Fluor 750 bombesin peptide conjugates in phantoms as well as mouse tissues. We also developed and evaluated fluorescent Bombesin (BBN) probes to target gastrin-releasing peptide (GRP) receptors for optical molecular imaging. GRP receptors are over-expressed in several types of human cancer cells, including breast, prostate, small cell lung, and pancreatic cancers. BBN is a 14 amino acid peptide that is an analogue to human gastrin-releasing peptide that binds specifically to GRPr receptors. BBN conjugates are significant in cancer detection and therapy. The

  9. Development of background-free tame fluorescent probes for intracellular live cell imaging

    PubMed Central

    Alamudi, Samira Husen; Satapathy, Rudrakanta; Kim, Jihyo; Su, Dongdong; Ren, Haiyan; Das, Rajkumar; Hu, Lingna; Alvarado-Martínez, Enrique; Lee, Jung Yeol; Hoppmann, Christian; Peña-Cabrera, Eduardo; Ha, Hyung-Ho; Park, Hee-Sung; Wang, Lei; Chang, Young-Tae

    2016-01-01

    Fluorescence labelling of an intracellular biomolecule in native living cells is a powerful strategy to achieve in-depth understanding of the biomolecule's roles and functions. Besides being nontoxic and specific, desirable labelling probes should be highly cell permeable without nonspecific interactions with other cellular components to warrant high signal-to-noise ratio. While it is critical, rational design for such probes is tricky. Here we report the first predictive model for cell permeable background-free probe development through optimized lipophilicity, water solubility and charged van der Waals surface area. The model was developed by utilizing high-throughput screening in combination with cheminformatics. We demonstrate its reliability by developing CO-1 and AzG-1, a cyclooctyne- and azide-containing BODIPY probe, respectively, which specifically label intracellular target organelles and engineered proteins with minimum background. The results provide an efficient strategy for development of background-free probes, referred to as ‘tame' probes, and novel tools for live cell intracellular imaging. PMID:27321135

  10. Development of background-free tame fluorescent probes for intracellular live cell imaging.

    PubMed

    Alamudi, Samira Husen; Satapathy, Rudrakanta; Kim, Jihyo; Su, Dongdong; Ren, Haiyan; Das, Rajkumar; Hu, Lingna; Alvarado-Martínez, Enrique; Lee, Jung Yeol; Hoppmann, Christian; Peña-Cabrera, Eduardo; Ha, Hyung-Ho; Park, Hee-Sung; Wang, Lei; Chang, Young-Tae

    2016-06-20

    Fluorescence labelling of an intracellular biomolecule in native living cells is a powerful strategy to achieve in-depth understanding of the biomolecule's roles and functions. Besides being nontoxic and specific, desirable labelling probes should be highly cell permeable without nonspecific interactions with other cellular components to warrant high signal-to-noise ratio. While it is critical, rational design for such probes is tricky. Here we report the first predictive model for cell permeable background-free probe development through optimized lipophilicity, water solubility and charged van der Waals surface area. The model was developed by utilizing high-throughput screening in combination with cheminformatics. We demonstrate its reliability by developing CO-1 and AzG-1, a cyclooctyne- and azide-containing BODIPY probe, respectively, which specifically label intracellular target organelles and engineered proteins with minimum background. The results provide an efficient strategy for development of background-free probes, referred to as 'tame' probes, and novel tools for live cell intracellular imaging.

  11. High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe

    PubMed Central

    Aguirre, Aaron D.; Sawinski, Juergen; Huang, Shu-Wei; Zhou, Chao; Denk, Winfried; Fujimoto, James G.

    2010-01-01

    Optical coherence microscopy (OCM) is a promising technique for high resolution cellular imaging in human tissues. An OCM system for high-speed en face cellular resolution imaging was developed at 1060 nm wavelength at frame rates up to 5 Hz with resolutions of < 4 µm axial and < 2 µm transverse. The system utilized a novel polarization compensation method to combat wavelength dependent source polarization and achieve broadband electro-optic phase modulation compatible with ultrahigh axial resolution. In addition, the system incorporated an auto-focusing feature that enables precise, near real-time alignment of the confocal and coherence gates in tissue, allowing user-friendly optimization of image quality during the imaging procedure. Ex vivo cellular images of human esophagus, colon, and cervix as well as in vivo results from human skin are presented. Finally, the system design is demonstrated with a miniaturized piezoelectric fiber-scanning probe which can be adapted for laparoscopic and endoscopic imaging applications. PMID:20389435

  12. Multi-Functionalized Carbon Nano-onions as Imaging Probes for Cancer Cells.

    PubMed

    Frasconi, Marco; Marotta, Roberto; Markey, Lyn; Flavin, Kevin; Spampinato, Valentina; Ceccone, Giacomo; Echegoyen, Luis; Scanlan, Eoin M; Giordani, Silvia

    2015-12-21

    Carbon-based nanomaterials have attracted much interest during the last decade for biomedical applications. Multimodal imaging probes based on carbon nano-onions (CNOs) have emerged as a platform for bioimaging because of their cell-penetration properties and minimal systemic toxicity. Here, we describe the covalent functionalization of CNOs with fluorescein and folic acid moieties for both imaging and targeting cancer cells. The modified CNOs display high brightness and photostability in aqueous solutions and their selective and rapid uptake in two different cancer cell lines without significant cytotoxicity was demonstrated. The localization of the functionalized CNOs in late-endosomes cell compartments was revealed by a correlative approach with confocal and transmission electron microscopy. Understanding the biological response of functionalized CNOs with the capability to target cancer cells and localize the nanoparticles in the cellular environment, will pave the way for the development of a new generation of imaging probes for future biomedical studies.

  13. Photoacoustic pump-probe tomography of fluorophores in vivo using interleaved image acquisition for motion suppression

    NASA Astrophysics Data System (ADS)

    Märk, Julia; Wagener, Asja; Zhang, Edward; Laufer, Jan

    2017-01-01

    In fluorophores, the excited state lifetime can be modulated using pump-probe excitation. By generating photoacoustic (PA) signals using simultaneous and time-delayed pump and probe excitation pulses at fluences below the maximum permissible exposure, a modulation of the signal amplitude is observed in fluorophores but not in endogenous chromophores. This provides a highly specific contrast mechanism that can be used to recover the location of the fluorophore using difference imaging. The practical challenges in applying this method to in vivo PA tomography include the typically low concentrations of fluorescent contrast agents, and tissue motion. The former results in smaller PA signal amplitudes compared to those measured in blood, while the latter gives rise to difference image artefacts that compromise the unambiguous and potentially noise-limited detection of fluorescent contrast agents. To address this limitation, a method based on interleaved pump-probe image acquisition was developed. It relies on fast switching between simultaneous and time-delayed pump-probe excitation to acquire PA difference signals in quick succession, and to minimise the effects of tissue motion. The feasibility of this method is demonstrated in tissue phantoms and in initial experiments in vivo.

  14. Photoacoustic pump-probe tomography of fluorophores in vivo using interleaved image acquisition for motion suppression

    PubMed Central

    Märk, Julia; Wagener, Asja; Zhang, Edward; Laufer, Jan

    2017-01-01

    In fluorophores, the excited state lifetime can be modulated using pump-probe excitation. By generating photoacoustic (PA) signals using simultaneous and time-delayed pump and probe excitation pulses at fluences below the maximum permissible exposure, a modulation of the signal amplitude is observed in fluorophores but not in endogenous chromophores. This provides a highly specific contrast mechanism that can be used to recover the location of the fluorophore using difference imaging. The practical challenges in applying this method to in vivo PA tomography include the typically low concentrations of fluorescent contrast agents, and tissue motion. The former results in smaller PA signal amplitudes compared to those measured in blood, while the latter gives rise to difference image artefacts that compromise the unambiguous and potentially noise-limited detection of fluorescent contrast agents. To address this limitation, a method based on interleaved pump-probe image acquisition was developed. It relies on fast switching between simultaneous and time-delayed pump-probe excitation to acquire PA difference signals in quick succession, and to minimise the effects of tissue motion. The feasibility of this method is demonstrated in tissue phantoms and in initial experiments in vivo. PMID:28091571

  15. Dual-Modality Activity-Based Probes as Molecular Imaging Agents for Vascular Inflammation.

    PubMed

    Withana, Nimali P; Saito, Toshinobu; Ma, Xiaowei; Garland, Megan; Liu, Changhao; Kosuge, Hisanori; Amsallem, Myriam; Verdoes, Martijn; Ofori, Leslie O; Fischbein, Michael; Arakawa, Mamoru; Cheng, Zhen; McConnell, Michael V; Bogyo, Matthew

    2016-10-01

    Macrophages are cellular mediators of vascular inflammation and are involved in the formation of atherosclerotic plaques. These immune cells secrete proteases such as matrix metalloproteinases and cathepsins that contribute to disease formation and progression. Here, we demonstrate that activity-based probes (ABPs) targeting cysteine cathepsins can be used in murine models of atherosclerosis to noninvasively image activated macrophage populations using both optical and PET/CT methods. The probes can also be used to topically label human carotid plaques demonstrating similar specific labeling of activated macrophage populations.

  16. Novel Strategy for Preparing Dual-Modality Optical/PET Imaging Probes via Photo-Click Chemistry.

    PubMed

    Sun, Lingyi; Ding, Jiule; Xing, Wei; Gai, Yongkang; Sheng, Jing; Zeng, Dexing

    2016-05-18

    Preparation of small molecule based dual-modality probes remains a challenging task due to the complicated synthetic procedure. In this study, a novel concise and generic strategy for preparing dual-modality optical/PET imaging probes via photo-click chemistry was developed, in which the diazole photo-click linker functioned not only as a bridge between the targeting-ligand and the PET imaging moiety, but also as the fluorophore for optical imaging. A dual-modality AE105 peptidic probe was successfully generated via this strategy and subsequently applied in the fluorescent staining of U87MG cells and the (68)Ga based PET imaging of mice bearing U87MG xenograft. In addition, dual-modality monoclonal antibody cetuximab has also been generated via this strategy and labeled with (64)Cu for PET imaging studies, broadening the application of this strategy to include the preparation of macromolecule based imaging probes.

  17. Semiconducting polymer nanoparticles as photoacoustic molecular imaging probes in living mice.

    PubMed

    Pu, Kanyi; Shuhendler, Adam J; Jokerst, Jesse V; Mei, Jianguo; Gambhir, Sanjiv S; Bao, Zhenan; Rao, Jianghong

    2014-03-01

    Photoacoustic imaging holds great promise for the visualization of physiology and pathology at the molecular level with deep tissue penetration and fine spatial resolution. To fully utilize this potential, photoacoustic molecular imaging probes have to be developed. Here, we introduce near-infrared light absorbing semiconducting polymer nanoparticles as a new class of contrast agents for photoacoustic molecular imaging. These nanoparticles can produce a stronger signal than the commonly used single-walled carbon nanotubes and gold nanorods on a per mass basis, permitting whole-body lymph-node photoacoustic mapping in living mice at a low systemic injection mass. Furthermore, the semiconducting polymer nanoparticles possess high structural flexibility, narrow photoacoustic spectral profiles and strong resistance to photodegradation and oxidation, enabling the development of the first near-infrared ratiometric photoacoustic probe for in vivo real-time imaging of reactive oxygen species--vital chemical mediators of many diseases. These results demonstrate semiconducting polymer nanoparticles to be an ideal nanoplatform for developing photoacoustic molecular probes.

  18. Whole-body kinetic image of a redox probe in mice using Overhauser-enhanced MRI.

    PubMed

    Kosem, Nuttavut; Naganuma, Tatsuya; Ichikawa, Kazuhiro; Phumala Morales, Noppawan; Yasukawa, Keiji; Hyodo, Fuminori; Yamada, Ken-Ichi; Utsumi, Hideo

    2012-07-15

    Overhauser-enhanced MRI (OMRI) enables visualization of free radicals in animals based on dynamic nuclear polarization. Real-time data of tissue redox status gathered from kinetic images of redox-sensitive nitroxyl radical probes using OMRI provided both anatomic and physiological information. Phantom experiments demonstrated the linear correlation between the enhancement factor and the concentration of a membrane-impermeable probe, carboxy-PROXYL (3-carboxy-2,2,5,5-tetramethyl- pyrrolidine-1-oxyl). Whole-body OMRI images illustrated the in vivo kinetics of carboxy-PROXYL for 25 min. Initial distribution was observed in lung, heart, liver, and kidney, but not brain, corresponding to its minimal lipophilicity. Based on these images (pixel size, 1.33 × 1.33 mm; slice thickness, 50mm), a time-concentration curve with low coefficient of variance (<0.21) was created to assess pharmacokinetic behaviors. A biexponential curve showed a distribution phase from 1 to 10 min and an elimination phase from 15 to 25 min. The α rate constant was greater than the β rate constant in ROIs, confirming that its pharmacokinetics obeyed a two-compartment model. As a noninvasive technique, combining OMRI imaging with redox probes to monitor tissue redox status may be useful in acquiring valuable information regarding organ function for preclinical and clinical studies of oxidative diseases.

  19. Semiconducting polymer nanoparticles as photoacoustic molecular imaging probes in living mice

    NASA Astrophysics Data System (ADS)

    Pu, Kanyi; Shuhendler, Adam J.; Jokerst, Jesse V.; Mei, Jianguo; Gambhir, Sanjiv S.; Bao, Zhenan; Rao, Jianghong

    2014-03-01

    Photoacoustic imaging holds great promise for the visualization of physiology and pathology at the molecular level with deep tissue penetration and fine spatial resolution. To fully utilize this potential, photoacoustic molecular imaging probes have to be developed. Here, we introduce near-infrared light absorbing semiconducting polymer nanoparticles as a new class of contrast agents for photoacoustic molecular imaging. These nanoparticles can produce a stronger signal than the commonly used single-walled carbon nanotubes and gold nanorods on a per mass basis, permitting whole-body lymph-node photoacoustic mapping in living mice at a low systemic injection mass. Furthermore, the semiconducting polymer nanoparticles possess high structural flexibility, narrow photoacoustic spectral profiles and strong resistance to photodegradation and oxidation, enabling the development of the first near-infrared ratiometric photoacoustic probe for in vivo real-time imaging of reactive oxygen species--vital chemical mediators of many diseases. These results demonstrate semiconducting polymer nanoparticles to be an ideal nanoplatform for developing photoacoustic molecular probes.

  20. A sensitive and specific Raman probe based on bisarylbutadiyne for live cell imaging of mitochondria.

    PubMed

    Yamakoshi, Hiroyuki; Palonpon, Almar; Dodo, Kosuke; Ando, Jun; Kawata, Satoshi; Fujita, Katsumasa; Sodeoka, Mikiko

    2015-02-01

    We previously showed that bisarylbutadiyne (BADY), which has a conjugated diyne structure, exhibits an intense peak in the cellular Raman-silent region. Here, we synthesized a mitochondria-selective Raman probe by linking bisphenylbutadiyne with triphenylphosphonium, a well-known mitochondrial targeting moiety. This probe, named MitoBADY, has a Raman peak 27 times more intense than that of 5-ethynyl-2'-deoxyuridine. Raman microscopy using submicromolar extracellular probe concentrations successfully visualized mitochondria in living cells. A full Raman spectrum is acquired at each pixel of the scanned sample, and we showed that simultaneous Raman imaging of MitoBADY and endogenous cellular biomolecules can be achieved in a single scan. MitoBADY should be useful for the study of mitochondrial dynamics.

  1. Multi-scale Imaging of Cellular and Sub-cellular Structures using Scanning Probe Recognition Microscopy.

    NASA Astrophysics Data System (ADS)

    Chen, Q.; Rice, A. F.

    2005-03-01

    Scanning Probe Recognition Microscopy is a new scanning probe capability under development within our group to reliably return to and directly interact with a specific nanobiological feature of interest. In previous work, we have successfully recognized and classified tubular versus globular biological objects from experimental atomic force microscope images using a method based on normalized central moments [ref. 1]. In this paper we extend this work to include recognition schemes appropriate for cellular and sub-cellular structures. Globular cells containing tubular actin filaments are under investigation. Thus there are differences in external/internal shapes and scales. Continuous Wavelet Transform with a differential Gaussian mother wavelet is employed for multi- scale analysis. [ref. 1] Q. Chen, V. Ayres and L. Udpa, ``Biological Investigation Using Scanning Probe Recognition Microscopy,'' Proceedings 3rd IEEE Conference on Nanotechnology, vol. 2, p 863-865 (2003).

  2. Design of a rectal probe for diffuse optical spectroscopy imaging for chemotherapy and radiotherapy monitoring

    NASA Astrophysics Data System (ADS)

    van de Giessen, Martijn; Santoro, Ylenia; Mirzaei Zarandi, Soroush; Pigazzi, Alessio; Cerussi, Albert E.; Tromberg, Bruce J.

    2014-03-01

    Diffuse optical spectroscopy imaging (DOSI) has shown great potential for the early detection of non-responding tumors during neoadjuvant chemotherapy in breast cancer, already one day after therapy starts. Patients with rectal cancer receive similar chemotherapy treatment. The rectum geometry and tissue properties of healthy and tumor tissue in the rectum and the requirement of surface contact impose constraints on the probe design. In this work we present the design of a DOSI probe with the aim of early chemotherapy/radiotherapy effectiveness detection in rectal tumors. We show using Monte Carlo simulations and phantom measurements that the colon tissue can be characterized reliably using a source-detector separation in the order of 10 mm. We present a design and rapid prototype of a probe for DOSI measurements that can be mounted on a standard laparoscope and that fits through a standard rectoscope. Using predominantly clinically approved components we aim at fast clinical translation.

  3. In vivo cellular-resolution retinal imaging in infants and children using an ultracompact handheld probe

    NASA Astrophysics Data System (ADS)

    Larocca, Francesco; Nankivil, Derek; Dubose, Theodore; Toth, Cynthia A.; Farsiu, Sina; Izatt, Joseph A.

    2016-09-01

    Enabled by adaptive optics, retinal photoreceptor cell imaging is changing our understanding of retinal structure and function, as well as the pathogenesis of numerous ocular diseases. To date, use of this technology has been limited to cooperative adult subjects due to the size, weight and inconvenience of the equipment, thus excluding study of retinal maturation during human development. Here, we report the design and operation of a handheld probe that can perform both scanning laser ophthalmoscopy and optical coherence tomography of the parafoveal photoreceptor structure in infants and children without the need for adaptive optics. The probe, featuring a compact optical design weighing only 94 g, was able to quantify packing densities of parafoveal cone photoreceptors and visualize cross-sectional photoreceptor substructure in children with ages ranging from 14 months to 12 years. The probe will benefit paediatric research by improving the understanding of retinal development, maldevelopment and early onset of disease during human growth.

  4. An Activatable Near Infrared Fluorescent Probe for In Vivo Imaging of Fibroblast Activation Protein-alpha

    PubMed Central

    Li, Jinbo; Chen, Kai; Liu, Hongguang; Cheng, Kai; Yang, Meng; Zhang, Jiping; Cheng, Jonathan D.; Zhang, Yan; Cheng, Zhen

    2012-01-01

    Fibroblast activation protein-alpha (FAPα) is a cell surface glycoprotein which is selectively expressed by tumor-associated fibroblasts in malignant tumors but rarely on normal tissues. FAPα has also been reported to promote tumor growth and invasion and therefore has been of increasing interest as a promising target for designing tumor-targeted drugs and imaging agents. Although medicinal study on FAPα inhibitors has led to the discovery of many FAPα-targeting inhibitors including a drug candidate in a phase II clinical trial, the development of imaging probes to monitor the expression and activity of FAPα in vivo has largely lagged behind. Herein we report an activatable near infrared (NIR) fluorescent probe (ANPFAP) for in vivo optical imaging of FAPα. The ANPFAP consists of a NIR dye (Cy5.5) and a quencher dye (QSY21) which are linked together by a short peptide sequence (KGPGPNQC) specific for FAPα cleavage. Because of the efficient fluorescence resonance energy transfer (FRET) between Cy5.5 and QSY21 in ANPFAP, high contrast on the NIR fluorescence signal can be achieved after the cleavage of the peptide sequence by FAPα both in vitro and in vivo. In vitro assay on ANPFAP indicated the specificity of the probe to FAPα. The in vivo optical imaging using ANPFAP showed fast tumor uptake as well as high tumor to background contrast on U87MG tumor models with FAPα expression, while much lower signal and tumor contrast were observed in the C6 tumor without FAPα expression, demonstrating the in vivo targeting specificity of the ANPFAP. Ex vivo imaging also demonstrated ANPFAP had high tumor uptake at 4 h post injection. Collectively, these results indicated that ANPFAP could serve as a useful NIR optical probe for early detection of FAPα expressing tumors. PMID:22812530

  5. A highly selective fluorescent probe based on coumarin for the imaging of N2H4 in living cells

    NASA Astrophysics Data System (ADS)

    Chen, Song; Hou, Peng; Wang, Jing; Liu, Lei; Zhang, Qi

    2017-02-01

    A turn-on fluorescence probe for highly sensitive and selective detection of N2H4 was developed based on hydrazine-triggered a substitution- cyclization-elimination cascade. Upon the treatment with N2H4, probe 1, 4-methyl-coumarin-7-yl bromobutanoate, displayed a remarkable fluorescence enhancement (25-fold) with a maximum at 450 nm. This probe can quantitatively detect N2H4 with a extremely low detection limit as 7 × 10- 8 M. Moreover, cell imaging experiments have indicated that probe 1 has potential ability to detect and image N2H4 in biological systems.

  6. Interventional multispectral photoacoustic imaging with a clinical linear array ultrasound probe for guiding nerve blocks

    NASA Astrophysics Data System (ADS)

    Xia, Wenfeng; West, Simeon J.; Nikitichev, Daniil I.; Ourselin, Sebastien; Beard, Paul C.; Desjardins, Adrien E.

    2016-03-01

    Accurate identification of tissue structures such as nerves and blood vessels is critically important for interventional procedures such as nerve blocks. Ultrasound imaging is widely used as a guidance modality to visualize anatomical structures in real-time. However, identification of nerves and small blood vessels can be very challenging, and accidental intra-neural or intra-vascular injections can result in significant complications. Multi-spectral photoacoustic imaging can provide high sensitivity and specificity for discriminating hemoglobin- and lipid-rich tissues. However, conventional surface-illumination-based photoacoustic systems suffer from limited sensitivity at large depths. In this study, for the first time, an interventional multispectral photoacoustic imaging (IMPA) system was used to image nerves in a swine model in vivo. Pulsed excitation light with wavelengths in the ranges of 750 - 900 nm and 1150 - 1300 nm was delivered inside the body through an optical fiber positioned within the cannula of an injection needle. Ultrasound waves were received at the tissue surface using a clinical linear array imaging probe. Co-registered B-mode ultrasound images were acquired using the same imaging probe. Nerve identification was performed using a combination of B-mode ultrasound imaging and electrical stimulation. Using a linear model, spectral-unmixing of the photoacoustic data was performed to provide image contrast for oxygenated and de-oxygenated hemoglobin, water and lipids. Good correspondence between a known nerve location and a lipid-rich region in the photoacoustic images was observed. The results indicate that IMPA is a promising modality for guiding nerve blocks and other interventional procedures. Challenges involved with clinical translation are discussed.

  7. Development of an endoscopic fluorescence image-guided OCT probe for oral cancer detection

    NASA Astrophysics Data System (ADS)

    McNichols, Roger J.; Gowda, Ashok; Bell, Brent A.; Johnigan, Richard M.; Calhoun, Karen H.; Motamedi, Massoud

    2001-06-01

    Oral squamous cell carcinoma is a disease which progresses through a number of well-defined morphological and biochemical changes. Optical coherence tomography (OCT) is a rapidly-evolving, non-invasive imaging modality which allows detailed probing of subsurface tissue structures with resolution on the order of microns. While this technique offers tremendous potential as a diagnostic tool for detection and characterization of oral cancer, OCT imaging is presently associated with a field of view on the order of millimeters, and acquisition time on the order of seconds. Thus, OCT's utility as a rapid cancer screening technique is presently limited. On the other hand, imaging of tissue autofluorescence provides a very rapid, high-throughput method for cancer screening. However, while autofluorescence measures may be sensitive to cancer, they are often non- specific and lead to a large number of false positives. In the present work, we have developed a fluorescence image guided optical coherence tomographic (FIG-OCT) probe in which tissue autofluorescence images are simultaneously used to guide OCT image acquisition of suspicious regions in real time. We have begun pre-clinical pilot studies with this instrument in a DMBA-induced model of oral cancer in the hamster cheek pouch. Initial results indicate that the FIG- OCT approach shows promise as a rapid and effective tool for screening of oral cancer.

  8. Silica micro/nanospheres for theranostics: from bimodal MRI and fluorescent imaging probes to cancer therapy

    PubMed Central

    Walia, Shanka

    2015-01-01

    Summary Nano-theranostics offer remarkable potential for future biomedical technology with simultaneous applications for diagnosis and therapy of disease sites. Through smart and careful chemical modifications of the nanoparticle surface, these can be converted to multifunctional tiny objects which in turn can be used as vehicle for delivering multimodal imaging agents and therapeutic material to specific target sites in vivo. In this sense, bimodal imaging probes that simultaneously enable magnetic resonance imaging and fluorescence imaging have gained tremendous attention because disease sites can be characterized quick and precisely through synergistic multimodal imaging. But such hybrid nanocomposite materials have limitations such as low chemical stability (magnetic component) and harsh cytotoxic effects (fluorescent component) and, hence, require a biocompatible protecting agent. Silica micro/nanospheres have shown promise as protecting agent due to the high stability and low toxicity. This review will cover a full description of MRI-active and fluorescent multifunctional silica micro/nanospheres including the design of the probe, different characterization methods and their application in imaging and treatment in cancer. PMID:25821696

  9. Pixelation effect removal from fiber bundle probe based optical coherence tomography imaging.

    PubMed

    Han, Jae-Ho; Lee, Junghoon; Kang, Jin U

    2010-03-29

    A method of eliminating pixelization effect from en face optical coherence tomography (OCT) image when a fiber bundle is used as an OCT imaging probe is presented. We have demonstrated that applying a histogram equalization process before performing a weighted-averaged Gaussian smoothing filter to the original lower gray level intensity based image not only removes the structural artifact of the bundle but also enhances the image quality with minimum blurring of object's image features. The measured contrast-to-noise ratio (CNR) for an image of the US Air Force test target was 14.7dB (4.9dB), after (before) image processing. In addition, by performing the spatial frequency analysis based on two-dimensional discrete Fourier transform (2-D DFT), we were able to observe that the periodic intensity peaks induced by the regularly arrayed structure of the fiber bundle can be efficiently suppressed by 41.0dB for the first nearby side lobe as well as to obtain the precise physical spacing information of the fiber grid. The proposed combined method can also be used as a straight forward image processing tool for any imaging system utilizing fiber bundle as a high-resolution imager.

  10. Two photon fluorescence imaging of lipid membrane domains and potentials using advanced fluorescent probes

    NASA Astrophysics Data System (ADS)

    Kilin, Vasyl; Darwich, Zeinab; Richert, Ludovic; Didier, Pascal; Klymchenko, Andrey; Mély, Yves

    2013-02-01

    Biomembranes are ordered and dynamic nanoscale structures critical for cell functions. The biological functions of the membranes strongly depend on their physicochemical properties, such as electrostatics, phase state, viscosity, polarity and hydration. These properties are essential for the membrane structure and the proper folding and function of membrane proteins. To monitor these properties, fluorescence techniques and notably, two-photon microscopy appear highly suited due to their exquisite sensitivity and their capability to operate in complex biological systems, such as living cells and tissues. In this context, we have developed multiparametric environment-sensitive fluorescent probes tailored for precise location in the membrane bilayer. We notably developed probes of the 3-hydroxychromone family, characterized by an excited state intramolecular proton transfer reaction, which generates two tautomeric emissive species with well-separated emission bands. As a consequence, the response of these probes to changes in their environment could be monitored through changes in the ratios of the two bands, as well as through changes in the fluorescence lifetimes. Using two-photon ratiometric imaging and FLIM, these probes were used to monitor the surface membrane potential, and were applied to detect apoptotic cells and image membrane domains.

  11. Immobilization of human papillomavirus DNA probe for surface plasmon resonance imaging

    NASA Astrophysics Data System (ADS)

    Chong, Xinyuan; Ji, Yanhong; Ma, Suihua; Liu, Le; Liu, Zhiyi; Li, Yao; He, Yonghong; Guo, Jihua

    2009-08-01

    Human papillomavirus (HPV) is a kind of double-stranded DNA virus whose subspecies have diversity. Near 40 kinds of subspecies can invade reproductive organ and cause some high risk disease, such as cervical carcinoma. In order to detect the type of the subspecies of the HPV DNA, we used the parallel scan spectral surface plasmon resonance (SPR) imaging technique, which is a novel type of two- dimensional bio-sensing method based on surface plasmon resonance and is proposed in our previous work, to study the immobilization of the HPV DNA probes on the gold film. In the experiment, four kinds of the subspecies of the HPV DNA (HPV16, HPV18, HPV31, HPV58) probes are fixed on one gold film, and incubate in the constant temperature condition to get a HPV DNA probe microarray. We use the parallel scan spectral SPR imaging system to detect the reflective indices of the HPV DNA subspecies probes. The benefits of this new approach are high sensitive, label-free, strong specificity and high through-put.

  12. VCAM-1-targeting gold nanoshell probe for photoacoustic imaging of atherosclerotic plaque in mice.

    PubMed

    Rouleau, Leonie; Berti, Romain; Ng, Vanessa W K; Matteau-Pelletier, Carl; Lam, Tina; Saboural, Pierre; Kakkar, Ashok K; Lesage, Frédéric; Rhéaume, Eric; Tardif, Jean-Claude

    2013-01-01

    The development of molecular probes and novel imaging modalities, allowing better resolution and specificity, is associated with an increased potential for molecular imaging of atherosclerotic plaques especially in basic and pre-clinical research applications. In that context, a photoacoustic molecular probe based on gold nanoshells targeting VCAM-1 in mice (immunonanoshells) was designed. The molecular probe was validated in vitro and in vivo, showing no noticeable acute toxic effects. We performed the conjugation of gold nanoshells displaying near-infrared absorption properties with VCAM-1 antibody molecules and PEG to increase their biocompatibility. The resulting immunonanoshells obtained under different conditions of conjugation were then assessed for specificity and sensitivity. Photoacoustic tomography was performed to determine the ability to distinguish gold nanoshells from blood both in phantoms and in vivo. Ex vivo optical projection tomography of hearts and aortas from atherosclerotic and control mice confirmed the selective accumulation of the immunonanoshells in atherosclerotic-prone regions in mice, thus validating the utility of the probe in vivo in small animals for pre-clinical research. These immunonanoshells represent an adequate mean to target atherosclerotic plaques in small animals, leading to new tools to follow the effect of therapies on the progression or regression of the disease.

  13. Application of a Scanning Thermal Nano-Probe for Thermal Imaging of High Frequency Active devices

    NASA Astrophysics Data System (ADS)

    Joodaki, Mojtaba; Janus, Pawel; Gotszalk, Teodor; Kompa, Günter; Edinger, Klaus; Rangelow, Ivo W.

    2005-09-01

    The first application of a new thermal nano-probe based on the changes of electrical resistivity of a nanometer-sized filament with temperature has been presented for the thermal imaging of microwave power active devices. The integration of the filament the fabrication process of the novel thermal probe with a spatial resolution better than 80 nm and a thermal resolution of the order of 10-3 K have already been presented in reference [J. Microelectron. Eng. \\textbf{57--58} (2001) 737]. To demonstrate the capability of the novel thermal nano-probe the measurements have been successfully performed on a 30 fingers GaAs metal--semiconductor field-effect transistor (GaAs-MESFET) with a maximum power dissipation of 2.5 W. The bias circuit has been designed to suppress the undesired microwave oscillations in the transistor. In this case the power dissipation is equal to the dc power input. The near-field measurements using the nano-probe are compared with infrared measurement and three-dimensional finite element static thermal simulations. The good agreement between simulations and measurements confirms the high capability of the nono-probe for these applications.

  14. An analysis and optimization of elliptical RF probes used in magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Forbes, Lawrence K.; Crozier, Stuart; Doddrell, David M.

    1996-09-01

    In magnetic resonance imaging of the entire body, it is often desirable to use an elliptical RF probe, rather than a circular one. As an ellipse more closely conforms to the anatomical cross section of the human thorax and head, better filling factors and therefore improved signal-to-noise ratios may be achieved by the use of elliptical RF coils. The probe is usually of bird-cage type, but the rungs are of finite width due to the high-frequency signals involved. This paper presents a method for computing the magnetic fields produced inside elliptical probes, and the current distributions on the rungs. A slotted shield is assumed to surround the probe, and its influence on field homogeneity is studied. In particular, the currents in a 16-runged unshielded elliptical coil of practical interest were determined optimally in one case, using simulated annealing to optimize the homogeneity of the magnetic field within the probe. The effects of a segmented shield of both elliptical and circular cross section on this coil are discussed, and the results are confirmed by experiment.

  15. A Nature-Inspired Betalainic Probe for Live-Cell Imaging of Plasmodium-Infected Erythrocytes

    PubMed Central

    Gonçalves, Letícia Christina Pires; Tonelli, Renata Rosito; Bagnaresi, Piero; Mortara, Renato Arruda; Ferreira, Antonio Gilberto; Bastos, Erick Leite

    2013-01-01

    A model betalainic dye was semisynthesized from betanin, the magenta pigment of the red beet, and was effective for live-cell imaging of Plasmodium-infected red blood cells. This water-soluble fluorescent probe is photostable, excitable in the visible region and cell membrane-permeable, and its photophysical properties are not notably pH-sensitive. Fluorescence imaging microscopy of erythrocytes infected with Plasmodium falciparum, a causative agent of malaria in humans, showed that only the parasite was stained. Z-stacking analysis suggested that the probe accumulates proximal to the nucleus of the parasite. Indicaxanthin, one of the natural fluorescent betalains found in the petals of certain flowers, did not stain the parasite or the red blood cell. PMID:23342028

  16. Vectorial modeling of near-field imaging with uncoated fiber probes: transfer function and resolving power.

    PubMed

    Gregersen, Niels; Tromborg, Bjarne; Bozhevolnyi, Sergey I

    2006-12-01

    Using exact 3D vectorial simulations of radiation coupling into uncoated dielectric fiber probes, we calculate amplitude transfer functions for conical single-mode fiber tips at the light wavelength of 633 nm. The coupling efficiency of glass fiber tips is determined in a wide range of spatial frequencies of the incident radiation for opening angles varying from 30 degrees to 120 degrees . The resolution in near-field imaging with these tips is considered for field distributions limited in both direct and spatial-frequency space. The characteristics of the transfer functions describing the relation between probed optical fields and near-field images are analyzed in detail. The importance of utilizing a perfectly sharp tip is also examined.

  17. New fluorescence imaging probe with high spatial resolution for in vivo applications.

    PubMed

    Bonnans, V; Gharbi, T; Pieralli, C; Wacogne, B; Humbert, Ph

    2004-01-01

    A new fiberized fluorescence imaging probe is presented. This device can potentially be used for a wide range of biological or medical applications. By exploiting the chromatic aberrations of gradient index lenses, the excitation blue or near-UV excitation light is focused on the sample surface, while the red fluorescence signal is efficiently launched back to collecting fibers. The excitation fiber is single mode at the working wavelength so that a resolution of 5 microm is obtained over a scanning area of several square millimeters. Experimental fluorescence images are presented. They concern either self-fabricated fluorescent microsamples or views of leaves that constitute an example of biological tissues analysis. The probe can also be adapted for spectroscopic investigations.

  18. Imaging individual proteins and nanodomains on intact cell membranes with a probe-based optical antenna.

    PubMed

    van Zanten, Thomas S; Lopez-Bosque, Maria J; Garcia-Parajo, Maria F

    2010-01-01

    Optical antennas that confine and enhance electromagnetic fields in a nanometric region hold great potential for nanobioimaging and biosensing. Probe-based monopole optical antennas are fabricated to enhance fields localized to <30 nm near the antenna apex in aqueous conditions. These probes are used under appropriate excitation antenna conditions to image individual antibodies with an unprecedented resolution of 26 +/- 4 nm and virtually no surrounding background. On intact cell membranes in physiological conditions, the obtained resolution is 30 +/- 6 nm. Importantly, the method allows individual proteins to be distinguished from nanodomains and the degree of clustering to be quantified by directly measuring physical size and intensity of individual fluorescent spots. Improved antenna geometries should lead to true live cell imaging below 10-nm resolution with position accuracy in the subnanometric range.

  19. First Results in the Development of a Compton Probe Prototype for Prostate Imaging

    NASA Astrophysics Data System (ADS)

    Llosá, G.

    2004-07-01

    Compton imaging offers the possibility to improve significantly prostate imaging. Current radiotracer techniques, such as PET, SPECT or planar scintigraphy, suffer from photon attenuation in the tissue, poor resolution or low efficiency. The development of a Compton probe employing silicon as scatter detector makes possible to obtain a considerable benefit over present instrumentation. Electronic collimation overcomes the resolution-efficiency tradeoff imposed by mechanical collimators, and due to its near field operation, both high resolution and high counting efficiency can be achieved. Silicon pad sensors and low noise electronics are being optimized for this application. A Compton probe prototype has been developed, proving its viability and enabling further steps towards the construction of a clinical prototype.

  20. Broadband pump-probe imaging spectroscopy applicable to ultrafast single-shot events

    NASA Astrophysics Data System (ADS)

    Minami, Yasuo; Yamaki, Hiromoto; Katayama, Ikufumi; Takeda, Jun

    2014-02-01

    We propose a scheme for frequency-resolved single-shot spectroscopy with an echelon mirror. The echelon mirror is employed to generate spatially encoded time delays for the white-light continuum probe beam; it produces a temporal step of 66 fs and an overall time delay of 33 ps. We demonstrate broadband pump-probe imaging spectroscopy and present time-frequency two-dimensional images of the transient absorption of β-carotene between 420 and 630 nm with single-shot detection. The results show that this technique is a powerful tool for observing the ultrafast, broadband transient dynamics of materials that exhibit irreversible reactions or deterioration by laser pulse irradiation.

  1. Investigation of SP94 Peptide as a Specific Probe for Hepatocellular Carcinoma Imaging and Therapy

    PubMed Central

    Li, Yanli; Hu, Yan; Xiao, Jie; Liu, Guobing; Li, Xiao; Zhao, Yanzhao; Tan, Hui; Shi, Hongcheng; Cheng, Dengfeng

    2016-01-01

    SP94 (SFSIIHTPILPL), a novel peptide, has shown specific binding to hepatocellular carcinoma (HCC) cells. We aimed to investigate the capability of SP94 as a targeting probe for HCC imaging and therapy following labeling with technetium-99m (99mTc) and rhenium-188 (188Re). HYNIC-SP94 was prepared by solid phase synthesis and then labeled with 99mTc. Cell competitive binding, internalization assay, in vitro and in vivo stability, biodistribution and micro-single photon emission computed tomography /computed tomography (SPECT/CT) imaging studies were performed to investigate the capability of 99mTc tricine-EDDA/HYNIC-SP94 as a specific HCC imaging probe. Initial promising targeting results inspired evaluation of its therapeutic effect when labeled by 188Re. HYNIC-SP94 was then labeled again with 188Re to perform cell apoptosis, microSPECT/CT imaging evaluation and immunohistochemistry. Huh-7 cells exhibited typical apoptotic changes after 188Re irradiation. According to 99mTc tricine-EDDA/HYNIC-SP94 microSPECT/CT imaging, tumor uptake was significantly decreased compared with that of pre-treatment with 188Re-HYNIC-SP94. The immunohistochemistry also displayed obvious necrosis and apoptosis as well as inhibition of proliferation in the 188Re-HYNIC-SP94 treatment group. The results supported that 99mTc tricine-EDDA/HYNIC-SP94 is able to target HCC cells and 188Re-HYNIC- SP94 holds potential as a therapeutic agent for HCC, making 99mTc/188Re-HYNIC-SP94 a promising targeting probe for HCC imaging and therapy. PMID:27649935

  2. Multiparameter spatio-thermochemical probing of flame–wall interactions advanced with coherent Raman imaging

    DOE PAGES

    Bohlin, Gustav Alexis; Jainski, Christopher; Patterson, Brian D.; ...

    2016-08-10

    Ultrabroadband coherent anti-Stokes Ra man spectroscopy (CARS) has been developed for one -dimensional imaging of temperature and major species distributions simultaneously in the near-wall region of a methane/air flame supported on a side-wall-quenching (SWQ) burner. Automatic temporal and spatial overlap of the ~7 femtosecond pump and Stokes pulses is achieved utilizing a two-beam CARS phase-matching scheme, and the crossed ~75 picosecond probe beam provide s excellent spatial sectioning of the probed location. Concurrent detection of N2, O2, H2, CO, CO2, and CH4 is demonstrated while high-fidelity flame thermometry is assessed from the N2 pure rotational S-branch in a one-dimensional -CARSmore » imaging configuration. A methane/air premixed flame at lean, stoichiometric, and rich conditions ( Φ = 0.83, 1.0 , and 1.2) and Reynolds number = 5,000 is probed as it quenches against a cooled steel side- wall parallel to the flow providing a persistent flame-wall interaction. Here, an imaging resolution of better than 40 μm is achieved across the field -of-view, thus allowing thermochemical states (temperature and major species) of the thermal boundary layer to be resolved to within ~30 μm of the interface.« less

  3. Dark quenched matrix metalloproteinase fluorogenic probe for imaging osteoarthritis development in vivo.

    PubMed

    Lee, Seulki; Park, Kyeongsoon; Lee, Seung-Young; Ryu, Ju Hee; Park, Jong Woong; Ahn, Hyung Jun; Kwon, Ick Chan; Youn, In-Chan; Kim, Kwangmeyung; Choi, Kuiwon

    2008-09-01

    The early detection of osteoarthritis (OA) is currently a key challenge in the field of rheumatology. Biochemical studies of OA have indicated that matrix metalloproteinase-13 (MMP-13) plays a central role in cartilage degradation. In this study, we describe the potential use of a dark-quenched fluorogenic MMP-13 probe to image MMP-13 in both in vitro and rat models. The imaging technique involved using a MMP-13 peptide substrate, near-infrared (NIR) dye, and a NIR dark quencher. The results from this study demonstrate that the use of a dark-quenched fluorogenic probe allows for the visual detection of MMP-13 in vitro and in OA-induced rat models. In particular, by targeting this OA biomarker, the symptoms of the early and late stages of OA can be readily monitored, imaged, and analyzed in a rapid and efficient fashion. We anticipate that this simple and highly efficient fluorogenic probe will assist in the clinical management of patients with OA, not only for early diagnosis but also to assess individual patient responses to new drug treatments.

  4. Multiparameter spatio-thermochemical probing of flame–wall interactions advanced with coherent Raman imaging

    SciTech Connect

    Bohlin, Gustav Alexis; Jainski, Christopher; Patterson, Brian D.; Dreizler, Andreas; Kliewer, Christopher Jesse

    2016-08-10

    Ultrabroadband coherent anti-Stokes Ra man spectroscopy (CARS) has been developed for one -dimensional imaging of temperature and major species distributions simultaneously in the near-wall region of a methane/air flame supported on a side-wall-quenching (SWQ) burner. Automatic temporal and spatial overlap of the ~7 femtosecond pump and Stokes pulses is achieved utilizing a two-beam CARS phase-matching scheme, and the crossed ~75 picosecond probe beam provide s excellent spatial sectioning of the probed location. Concurrent detection of N2, O2, H2, CO, CO2, and CH4 is demonstrated while high-fidelity flame thermometry is assessed from the N2 pure rotational S-branch in a one-dimensional -CARS imaging configuration. A methane/air premixed flame at lean, stoichiometric, and rich conditions ( Φ = 0.83, 1.0 , and 1.2) and Reynolds number = 5,000 is probed as it quenches against a cooled steel side- wall parallel to the flow providing a persistent flame-wall interaction. Here, an imaging resolution of better than 40 μm is achieved across the field -of-view, thus allowing thermochemical states (temperature and major species) of the thermal boundary layer to be resolved to within ~30 μm of the interface.

  5. Scanning probe microscopy of atoms and molecules on insulating films: from imaging to molecular manipulation.

    PubMed

    Meyer, Gerhard; Gross, Leo; Mohn, Fabian; Repp, Jascha

    2012-01-01

    Scanning tunneling microscopy (STM) and atomic force microscopy (AFM) of single atoms and molecules on ultrathin insulating films have led to a wealth of novel observations and insights. Based on the reduced electronic coupling to the metallic substrate, these techniques allow the charge state of individual atoms to be controlled, orbitals of individual molecules to be imaged and metal-molecule complexes to be built up. Near-contact AFM adds the unique capabilities of imaging and probing the chemical structure of single molecules with atomic resolution. With the help of atomic/molecular manipulation techniques, chemical binding processes and molecular switches can be studied in detail.

  6. Dual Frequency Band Annular Probe for Volumetric Pulse-echo Optoacoustic Imaging

    NASA Astrophysics Data System (ADS)

    Kalkhoran, Mohammad Azizian; Varray, François; Vray, Didier

    Optoacoustic (OA) pulse echo (PE) imaging is a hybridized modality that is capable of providing physiological information on the basis of anatomical structure. In this work, we propose a dual frequency band annular probe for backward mode volumetric PE/OA imaging. The performance of this design is evaluated based on the spatio-temporal impulse response, three dimensional steerability of the transducer and point spread function. Optimum settings for number of elements in each ring and maximum steering are suggested. The transducer design and synthetic array beamforming simulation are presented. The resolution performance and reconstruction capabilities are shown with the in-silico measurements.

  7. Automated Registration of Freehand B-Mode Ultrasound and Magnetic Resonance Imaging of the Carotid Arteries Based on Geometric Features.

    PubMed

    Carvalho, Diego D B; Arias Lorza, Andres Mauricio; Niessen, Wiro J; de Bruijne, Marleen; Klein, Stefan

    2017-01-01

    An automated method for registering B-mode ultrasound (US) and magnetic resonance imaging (MRI) of the carotid arteries is proposed. The registration uses geometric features, namely, lumen centerlines and lumen segmentations, which are extracted fully automatically from the images after manual annotation of three seed points in US and MRI. The registration procedure starts with alignment of the lumen centerlines using a point-based registration algorithm. The resulting rigid transformation is used to initialize a rigid and subsequent non-rigid registration procedure that jointly aligns centerlines and segmentations by minimizing a weighted sum of the Euclidean distance between centerlines and the dissimilarity between segmentations. The method was evaluated in 28 carotid arteries from eight patients and six healthy volunteers. First, the automated US lumen segmentation method was validated and optimized in a cross-validation experiment. Next, the effect of the weighting parameter of the proposed registration dissimilarity metric and the control point spacing in the non-rigid registration was evaluated. Finally, the proposed registration method was evaluated in comparison to an existing intensity-and-point-based method, a registration using only the centerlines and a registration using manual US lumen segmentations. Registration accuracy was measured in terms of the mean surface distance between manual US segmentations and the registered MRI segmentations. The average mean surface distance was 0.78 ± 0.34 mm for all subjects, 0.65 ± 0.09 mm for healthy volunteers and 0.87 ± 0.42 mm for patients. The results for the complete set were significantly better (Wilcoxon test, p < 0.01) than the results for the intensity-and-point-based method and the centerline-based registration method. We conclude that the proposed method can robustly and accurately register US and MR images of the carotid artery, allowing multimodal analysis of the carotid plaque to improve

  8. Polyelectrolyte carbon quantum-dots: new player as a noninvasive imaging probe in Drosophila.

    PubMed

    Parvin, Nragish; Mandal, Tapas K; Roy, Partha

    2013-10-01

    It is since long that X-ray or magnetic resonance imaging is being used for biomedical diagnosis. But till date noninvasive soft tissue imaging is not very well established. Towards this end the dietary uptake of polyelectrolyte carbon quantum dots (PECQDs) and their uses as a fluorescent probe is a new approach for imaging live specimens. In the present study we demonstrate that polyelectrolyte carbon quantum dots, which are nontoxic and have fluorescence properties can be used for in vivo imaging of internal organs. Carbon quantum dots surface were abound in polymer of free carboxyl groups making it water soluble. Our used PECQDs are less than equal to 50 nm sized and are capable to emit multi colour fluorescence. It is synthesized from waste plant materials like shaded leaves, unused shrubs, herbs etc. An exposure of 1 ppm level of soluble carbon quantum dots for 12 hours in drosophila permitted the fluorescence microscopy imaging of the different stages of their development and their non invasive internal organs without any remarkable toxic effects. Finally the fluorescent material was found to be excreted out of the animals. The current data suggests that visualization of internal organs with a fluorescent probe in live cells could help in determining the efficacy of therapeutic treatments directly without the need of any invasive procedures.

  9. Ultrathin forward-imaging short multimode fiber probe for full-field optical coherence microscopy

    NASA Astrophysics Data System (ADS)

    Sato, Manabu; Saito, Daisuke; Shouji, Kou; Kurotani, Reiko; Abe, Hiroyuki; Nishidate, Izumi

    2016-12-01

    To extend the applications of optical coherence tomography (OCT) to the fields of physiology and clinical medicine, less invasive, robust, and reliable optical probes are required. Thus, we demonstrate an ultrathin forward-imaging short multimode fiber (SMMF) optical coherence microscopy (OCM) probe with a 50 μm core diameter, 125 μm total diameter, and 5.12 mm length. Imaging conditions and magnification were analyzed, and they correspond closely to the measured results. The dispersion of the SMMF was investigated, and the modal dispersion coefficient was found to be 2.3% of the material dispersion coefficient. The axial resolution was minimized at 2.15 μm using a 0.885-mm-thick dispersion compensator. The lateral resolution was evaluated to be 4.38 μm using a test pattern. The contrast of the OCM images was 5.7 times higher than that of the signal images owing to the coherence gate. The depth of focus and diameter of the field of view were measured to be 60 μm and 40-50 μm, respectively. OCM images of the dried fins of small fish (Medaka) were measured and internal structures could be recognized.

  10. Hyperspectral nanoscale imaging on dielectric substrates with coaxial optical antenna scan probes.

    PubMed

    Weber-Bargioni, Alexander; Schwartzberg, Adam; Cornaglia, Matteo; Ismach, Ariel; Urban, Jeffrey J; Pang, Yuanjie; Gordon, Reuven; Bokor, Jeffrey; Salmeron, Miquel B; Ogletree, D Frank; Ashby, Paul; Cabrini, Stefano; Schuck, P James

    2011-03-09

    We have demonstrated hyperspectral tip-enhanced Raman imaging on dielectric substrates using linearly polarized light and nanofabricated coaxial antenna tips. A full Raman spectrum was acquired at each pixel of a 256 by 256 pixel contact-mode atomic force microscope image of carbon nanotubes grown on a fused silica microscope coverslip, allowing D and G mode intensity and D-mode peak shifts to be measured with ∼20 nm spatial resolution. Tip enhancement was sufficient to acquire useful Raman spectra in 50-100 ms. Coaxial scan probes combine the efficiency and enhanced, ultralocalized optical fields of plasmonically coupled antennae with the superior topographical imaging properties of sharp metal tips. The yield of the coaxial tip fabrication process is close to 100%, and the tips are sufficiently durable to support hours of contact-mode force microscope imaging. Our coaxial probes avoid the limitations associated with the "gap-mode" imaging geometry used in most tip-enhanced Raman studies to date, where a sharp metal tip is held ∼1 nm above a metallic substrate with the sample located in the gap.

  11. Ultra-sound imaging for precision implantation of a multi sensor temperature probe in skeletal muscle tissue.

    PubMed

    Kenny, Glen P; Reardon, Frank D; Ducharme, Michel B; Reardon, Mark L; Zaleski, Wytek

    2002-10-01

    A technique for implanting multi sensor temperature probes in muscle tissue was developed to optimize the accuracy of the tissue temperature measurements and the internal localization of the probe. Real time ultra-sound imaging was used to (a) determine the best perpendicular insertion tract, (b) guide the insertion of the probe in order to avoid major blood vessels, and (c) verify the insertion point relative to discernable anatomic reference structures such as arteries and bone.

  12. Effects of geometric variables on the performance of a probe for direct measurement of free-steam stagnation pressure in supersonic flow

    NASA Technical Reports Server (NTRS)

    Couch, L. M.

    1975-01-01

    An investigation was conducted at Mach numbers of 1.41, 1.83, and 2.20 to determine the effects of parametric variations in the height of the pitot-tube center line from the probe surface and in the radius of the surface curvature on the pressure recovery of a probe designed to measure the free-stream stagnation pressure. The probe consists of a pitot tube mounted on the surface of a curved cylinder of circular cross section. The pitot tube senses the pressure of the stream tube which has been slowed by isentropic compression along the curved surface. Pressure recovery, greater than or equal to 99.8 percent of the free-stream stagnation pressure, was obtained for a wide range both of angle of attack and of yaw for probes satisfying the predetermined optimum design criteria.

  13. Imaging on a Shoestring: Cost-Effective Technologies for Probing Vadose Zone Transport Processes

    NASA Astrophysics Data System (ADS)

    Corkhill, C.; Bridge, J. W.; Barns, G.; Fraser, R.; Romero-Gonzalez, M.; Wilson, R.; Banwart, S.

    2010-12-01

    Key barriers to the widespread uptake of imaging technology for high spatial resolution monitoring of porous media systems are cost and accessibility. X-ray tomography, magnetic resonance imaging (MRI), gamma and neutron radiography require highly specialised equipment, controlled laboratory environments and/or access to large synchrotron facilities. Here we present results from visible light, fluorescence and autoradiographic imaging techniques developed at low cost and applied in standard analytical laboratories, adapted where necessary at minimal capital expense. UV-visible time lapse fluorescence imaging (UV-vis TLFI) in a transparent thin bed chamber enabled microspheres labelled with fluorescent dye and a conservative fluorophore solute (disodium fluorescein) to be measured simultaneously in saturated, partially-saturated and actively draining quartz sand to elucidate empirical values for colloid transport and deposition parameters distributed throughout the flow field, independently of theoretical approximations. Key results include the first experimental quantification of the effects of ionic strength and air-water interfacial area on colloid deposition above a capillary fringe, and the first direct observations of particle mobilisation and redeposition by moving saturation gradients during drainage. UV-vis imaging was also used to study biodegradation and reactive transport in a variety of saturated conditions, applying fluorescence as a probe for oxygen and nitrate concentration gradients, pH, solute transport parameters, reduction of uranium, and mapping of two-dimensional flow fields around a model dipole flow borehole system to validate numerical models. Costs are low: LED excitation sources (< US 50), flow chambers (US 200) and detectors (although a complete scientific-grade CCD set-up costs around US$ 8000, robust datasets can be obtained using a commercial digital SLR camera) mean that set-ups can be flexible to meet changing experimental

  14. Quad-barrel multifunctional electrochemical and ion conductance probe for voltammetric analysis and imaging.

    PubMed

    Nadappuram, Binoy Paulose; McKelvey, Kim; Byers, Joshua C; Güell, Aleix G; Colburn, Alex W; Lazenby, Robert A; Unwin, Patrick R

    2015-04-07

    The fabrication and use of a multifunctional electrochemical probe incorporating two independent carbon working electrodes and two electrolyte-filled barrels, equipped with quasi-reference counter electrodes (QRCEs), in the end of a tapered micrometer-scale pipet is described. This "quad-probe" (4-channel probe) was fabricated by depositing carbon pyrolytically into two diagonally opposite barrels of a laser-pulled quartz quadruple-barrelled pipet. After filling the open channels with electrolyte solution, a meniscus forms at the end of the probe and covers the two working electrodes. The two carbon electrodes can be used to drive local electrochemical reactions within the meniscus while a bias between the QRCEs in the electrolyte channels provides an ion conductance signal that is used to control and position the meniscus on a surface of interest. When brought into contact with a surface, localized high resolution amperometric imaging can be achieved with the two carbon working electrodes with a spatial resolution defined by the meniscus contact area. The substrate can be an insulating material or (semi)conductor, but herein, we focus mainly on conducting substrates that can be connected as a third working electrode. Studies using both aqueous and ionic liquid electrolytes in the probe, together with gold and individual single walled carbon nanotube samples, demonstrate the utility of the technique. Substrate generation-dual tip collection measurements are shown to be characterized by high collection efficiencies (approaching 100%). This hybrid configuration of scanning electrochemical microscopy (SECM) and scanning electrochemical cell microscopy (SECCM) should be powerful for future applications in electrode mapping, as well as in studies of insulating materials as demonstrated by transient spot redox-titration measurements at an electrostatically charged Teflon surface and at a pristine calcite surface, where a functionalized probe is used to follow the

  15. Nanoscale probing of image-dipole interactions in a metallic nanostructure

    PubMed Central

    Ropp, Chad; Cummins, Zachary; Nah, Sanghee; Fourkas, John T.; Shapiro, Benjamin; Waks, Edo

    2015-01-01

    An emitter near a surface induces an image dipole that can modify the observed emission intensity and radiation pattern. These image-dipole effects are generally not taken into account in single-emitter tracking and super-resolved imaging applications. Here we show that the interference between an emitter and its image dipole induces a strong polarization anisotropy and a large spatial displacement of the observed emission pattern. We demonstrate these effects by tracking the emission of a single quantum dot along two orthogonal polarizations as it is deterministically positioned near a silver nanowire. The two orthogonally polarized diffraction spots can be displaced by up to 50 nm, which arises from a Young’s interference effect between the quantum dot and its induced image dipole. We show that the observed spatially varying interference fringe provides a useful measure for correcting image-dipole-induced distortions. These results provide a pathway towards probing and correcting image-dipole effects in near-field imaging applications. PMID:25790228

  16. Mapping the electrostatic force field of single molecules from high-resolution scanning probe images

    PubMed Central

    Hapala, Prokop; Švec, Martin; Stetsovych, Oleksandr; van der Heijden, Nadine J.; Ondráček, Martin; van der Lit, Joost; Mutombo, Pingo; Swart, Ingmar; Jelínek, Pavel

    2016-01-01

    How electronic charge is distributed over a molecule determines to a large extent its chemical properties. Here, we demonstrate how the electrostatic force field, originating from the inhomogeneous charge distribution in a molecule, can be measured with submolecular resolution. We exploit the fact that distortions typically observed in high-resolution atomic force microscopy images are for a significant part caused by the electrostatic force acting between charges of the tip and the molecule of interest. By finding a geometrical transformation between two high-resolution AFM images acquired with two different tips, the electrostatic force field or potential over individual molecules and self-assemblies thereof can be reconstructed with submolecular resolution. PMID:27230940

  17. Micro-CT molecular imaging of tumor angiogenesis using a magnetite nano-cluster probe.

    PubMed

    Liu, Ping; Li, Jing; Zhang, Chunfu; Xu, Lisa X

    2013-06-01

    Due to its high resolution, micro-CT is desirable for molecular imaging of tumor angiogenesis. However, the sensitivity of micro-CT to contrast agents is relatively low. Therefore, the purpose of this study is to develop high micro-CT sensitive molecular imaging probes for direct visualization and dynamic monitoring of tumor angiogenesis. To this end, Arg-Gly-Asp (RGD) peptides conjugated magnetite nano clusters (RGD-MNCs) were developed by assembling individual magnetite nano particles into clusters with amphiphilic (maleimide) methoxypoly(ethylene glycol)-b-poly(lactic acid) ((Mal)mPEG-PLA) copolymer and subsequently encoding RGD peptides onto the clusters for specific targeting alpha(v)beta3 integrin. The hydrodynamic size of RGD-MNCs was about 85 nm. To test its specificity, alpha(v)beta3 positive cells (H1299) were incubated with magnetite nano clusters (MNCs), RGD-MNCs or RGD-MNCs competition with free RGD peptides. Prussian Blue staining and inductively coupled plasma optical emission spectrometer (ICP-OES) measurements indicated that the cell uptake of RGD-MNCs was significantly more than that of MNCs, which could be inhibited by free RGD peptides. For detection of tumor angiogenesis, mice bearing H1299 tumors were injected intravenously with RGD-MNCs at the dose of 400 micro mol Fe/kg. Tumor angiogenic hot spots as well as individual angiogenic vessels could be clearly manifested by micro-CT imaging 12 h post injection, which was dynamically monitored with the extension of probe circulation time. Subsequent histological studies of tumor tissues verified that RGD-MNCs registered tumor angiogenic vessels. Our study demonstrated that RGD-MNC probes fabricated in this study could be used to effectively target alpha(v)beta3 integrin. Using high resolution micro-CT in combination with the probes, tumor angiogenesis could be studied dynamically.

  18. Molecular engineering of a TBET-based two-photon fluorescent probe for ratiometric imaging of living cells and tissues.

    PubMed

    Zhou, Liyi; Zhang, Xiaobing; Wang, Qianqian; Lv, Yifan; Mao, Guojiang; Luo, Aili; Wu, Yongxiang; Wu, Yuan; Zhang, Jing; Tan, Weihong

    2014-07-16

    In contrast to one-photon microscopy, two-photon probe-based fluorescent imaging can provide improved three-dimensional spatial localization and increased imaging depth. Consequently, it has become one of the most attractive techniques for studying biological events in living cells and tissues. However, the quantitation of these probes is primarily based on single-emission intensity change, which tends to be affected by a variety of environmental factors. Ratiometric probes, on the other hand, can eliminate these interferences by the built-in correction of the dual emission bands, resulting in a more favorable system for imaging living cells and tissues. Herein, for the first time, we adopted a through-bond energy transfer (TBET) strategy to design and synthesize a small molecular ratiometric two-photon fluorescent probe for imaging living cells and tissues in real time. Specifically, a two-photon fluorophore (D-π-A-structured naphthalene derivative) and a rhodamine B fluorophore are directly connected by electronically conjugated bond to form a TBET probe, or Np-Rh, which shows a target-modulated ratiometric two-photon fluorescence response with highly efficient energy transfer (93.7%) and two well-resolved emission peaks separated by 100 nm. This novel probe was then applied for two-photon imaging of living cells and tissues and showed high ratiometric imaging resolution and deep-tissue imaging depth of 180 μm, thus demonstrating its practical application in biological systems.

  19. Dual-Modal Magnetic Resonance/Fluorescent Zinc Probes for Pancreatic β-Cell Mass Imaging

    PubMed Central

    Stasiuk, Graeme J; Minuzzi, Florencia; Sae-Heng, Myra; Rivas, Charlotte; Juretschke, Hans-Paul; Piemonti, Lorenzo; Allegrini, Peter R; Laurent, Didier; Duckworth, Andrew R; Beeby, Andrew; Rutter, Guy A; Long, Nicholas J

    2015-01-01

    Despite the contribution of changes in pancreatic β-cell mass to the development of all forms of diabetes mellitus, few robust approaches currently exist to monitor these changes prospectively in vivo. Although magnetic-resonance imaging (MRI) provides a potentially useful technique, targeting MRI-active probes to the β cell has proved challenging. Zinc ions are highly concentrated in the secretory granule, but they are relatively less abundant in the exocrine pancreas and in other tissues. We have therefore developed functional dual-modal probes based on transition-metal chelates capable of binding zinc. The first of these, Gd⋅1, binds ZnII directly by means of an amidoquinoline moiety (AQA), thus causing a large ratiometric Stokes shift in the fluorescence from λem=410 to 500 nm with an increase in relaxivity from r1=4.2 up to 4.9 mM−1 s−1. The probe is efficiently accumulated into secretory granules in β-cell-derived lines and isolated islets, but more poorly by non-endocrine cells, and leads to a reduction in T1 in human islets. In vivo murine studies of Gd⋅1 have shown accumulation of the probe in the pancreas with increased signal intensity over 140 minutes. PMID:25736590

  20. Clinical translation of an ultrasmall inorganic optical-PET imaging nanoparticle probe

    PubMed Central

    Phillips, Evan; Penate-Medina, Oula; Zanzonico, Pat B.; Carvajal, Richard D.; Mohan, Pauliah; Ye, Yunpeng; Humm, John; Gönen, Mithat; Kalaigian, Hovanes; Schöder, Heiko; Strauss, H. William; Larson, Steven M.; Wiesner, Ulrich; Bradbury, Michelle S.

    2015-01-01

    A first-in-human clinical trial of ultrasmall inorganic hybrid nanoparticles, “C dots” (Cornell dots), in patients with metastatic melanoma is described for the imaging of cancer. These renally excreted silica particles were labeled with 124I for positron emission tomography (PET) imaging and modified with cRGDY peptides for molecular targeting. 124I-cRGDY–PEG–C dot particles are inherently fluorescent, containing the dye, Cy5, so they may be used as hybrid PET-optical imaging agents for lesion detection, cancer staging, and treatment management in humans. However, the clinical translation of nanoparticle probes, including quantum dots, has not kept pace with the accelerated growth in minimally invasive surgical tools that rely on optical imaging agents. The safety, pharmacokinetics, clearance properties, and radiation dosimetry of 124I-cRGDY–PEG–C dots were assessed by serial PET and computerized tomography after intravenous administration in patients. Metabolic profiles and laboratory tests of blood and urine specimens, obtained before and after particle injection, were monitored over a 2-week interval. Findings are consistent with a well-tolerated inorganic particle tracer exhibiting in vivo stability and distinct, reproducible pharmacokinetic signatures defined by renal excretion. No toxic or adverse events attributable to the particles were observed. Coupled with preferential uptake and localization of the probe at sites of disease, these first-in-human results suggest safe use of these particles in human cancer diagnostics. PMID:25355699

  1. Photoacoustic Imaging with a Commercial Ultrasound System and a Custom Probe

    PubMed Central

    Wang, Xueding; Fowlkes, J. Brian; Cannata, Jonathan M.; Hu, Changhong; Carson, Paul L.

    2010-01-01

    Building photoacoustic imaging (PAI) systems by using stand-alone ultrasound (US) units makes it convenient to take advantage of the state-of-the-art ultrasonic technologies. However, the sometimes limited receiving sensitivity and the comparatively narrow bandwidth of commercial US probes may not be sufficient to acquire high quality photoacoustic images. In this work, a high-speed PAI system has been developed using a commercial US unit and a custom built 128-element piezoelectric-polymer array (PPA) probe using a P(VDF-TrFE) film and flexible circuit to define the elements. Since the US unit supports simultaneous signal acquisition from 64 parallel receive channels, PAI data for synthetic image formation from a 64 or 128 element array aperture can be acquired after a single or dual laser firing, respectively. Therefore, 2D B-scan imaging can be achieved with a maximum frame rate up to 10 Hz, limited only by the laser repetition rate. The uniquely properties of P(VDF-TrFE) facilitated a wide -6 dB receiving bandwidth of over 120 % for the array. A specially designed 128-channel preamplifier board made the connection between the array and the system cable which not only enabled element electrical impedance matching but also further elevated the signal-to-noise ratio (SNR) to further enhance the detection of weak photoacoustic signals. Through the experiments on phantoms and rabbit ears, the good performance of this PAI system was demonstrated. PMID:21276653

  2. Spectrally encoded fiber-based structured lighting probe for intraoperative 3D imaging

    PubMed Central

    Clancy, Neil T.; Stoyanov, Danail; Maier-Hein, Lena; Groch, Anja; Yang, Guang-Zhong; Elson, Daniel S.

    2011-01-01

    Three dimensional quantification of organ shape and structure during minimally invasive surgery (MIS) could enhance precision by allowing the registration of multi-modal or pre-operative image data (US/MRI/CT) with the live optical image. Structured illumination is one technique to obtain 3D information through the projection of a known pattern onto the tissue, although currently these systems tend to be used only for macroscopic imaging or open procedures rather than in endoscopy. To account for occlusions, where a projected feature may be hidden from view and/or confused with a neighboring point, a flexible multispectral structured illumination probe has been developed that labels each projected point with a specific wavelength using a supercontinuum laser. When imaged by a standard endoscope camera they can then be segmented using their RGB values, and their 3D coordinates calculated after camera calibration. The probe itself is sufficiently small (1.7 mm diameter) to allow it to be used in the biopsy channel of commonly used medical endoscopes. Surgical robots could therefore also employ this technology to solve navigation and visualization problems in MIS, and help to develop advanced surgical procedures such as natural orifice translumenal endoscopic surgery. PMID:22076272

  3. GLP-1 receptor antagonist as a potential probe for pancreatic {beta}-cell imaging

    SciTech Connect

    Mukai, Eri; Toyoda, Kentaro; Kimura, Hiroyuki; Kawashima, Hidekazu; Fujimoto, Hiroyuki; Ueda, Masashi; Temma, Takashi; Hirao, Konomu; Nagakawa, Kenji; Saji, Hideo; Inagaki, Nobuya

    2009-11-20

    We examined exendin(9-39), an antagonist of glucagon-like peptide-1 (GLP-1) receptor (GLP-1R), as a potential probe for imaging of pancreatic {beta}-cells. To evaluate in vitro receptor specificity, binding assay was performed using dispersed mouse islet cells. Binding assay showed competitive inhibition of [{sup 125}I]BH-exendin(9-39) binding by non-radioactive exendin(9-39). To assess in vivo selectivity, the biodistribution was evaluated by intravenous administration of [{sup 125}I]BH-exendin(9-39) to mice. Radioactivity of harvested pancreas reached highest levels at 60 and 120 min among organs examined except lung. Pre-administration of excess non-radioactive exendin(9-39) remarkably and specifically blocked the radioactivity of pancreas. After [{sup 125}I]BH-exendin(9-39) injection into transgenic mice with pancreatic {beta}-cells expressing GFP, fluorescent and radioactive signals of sections of pancreas were evaluated with an image analyzer. Imaging analysis showed that the fluorescent GFP signals and the radioactive signals were correspondingly located. Thus, the GLP-1R antagonist exendin(9-39) may serve as a useful probe for pancreatic {beta}-cell imaging.

  4. Volumetric synthetic aperture imaging with a piezoelectric 2D row-column probe

    NASA Astrophysics Data System (ADS)

    Bouzari, Hamed; Engholm, Mathias; Christiansen, Thomas Lehrmann; Beers, Christopher; Lei, Anders; Stuart, Matthias Bo; Nikolov, Svetoslav Ivanov; Thomsen, Erik Vilain; Jensen, Jørgen Arendt

    2016-04-01

    The synthetic aperture (SA) technique can be used for achieving real-time volumetric ultrasound imaging using 2-D row-column addressed transducers. This paper investigates SA volumetric imaging performance of an in-house prototyped 3 MHz λ/2-pitch 62+62 element piezoelectric 2-D row-column addressed transducer array. Utilizing single element transmit events, a volume rate of 90 Hz down to 14 cm deep is achieved. Data are obtained using the experimental ultrasound scanner SARUS with a 70 MHz sampling frequency and beamformed using a delay-and-sum (DAS) approach. A signal-to-noise ratio of up to 32 dB is measured on the beamformed images of a tissue mimicking phantom with attenuation of 0.5 dB cm-1 MHz-1, from the surface of the probe to the penetration depth of 300λ. Measured lateral resolution as Full-Width-at-Half-Maximum (FWHM) is between 4λ and 10λ for 18% to 65% of the penetration depth from the surface of the probe. The averaged contrast is 13 dB for the same range. The imaging performance assessment results may represent a reference guide for possible applications of such an array in different medical fields.

  5. Dual PET and Near-Infrared Fluorescence Imaging Probes as Tools for Imaging in Oncology

    PubMed Central

    An, Fei-Fei; Chan, Mark; Kommidi, Harikrishna; Ting, Richard

    2016-01-01

    OBJECTIVE The purpose of this article is to summarize advances in PET fluorescence resolution, agent design, and preclinical imaging that make a growing case for clinical PET fluorescence imaging. CONCLUSION Existing SPECT, PET, fluorescence, and MRI contrast imaging techniques are already deeply integrated into the management of cancer, from initial diagnosis to the observation and management of metastases. Combined positron-emitting fluorescent contrast agents can convey new or substantial benefits that improve on these proven clinical contrast agents. PMID:27223168

  6. Kelvin probe force microscopy: imaging open-circuit voltage in optoelectronic devices

    NASA Astrophysics Data System (ADS)

    Tennyson, Elizabeth; Garrett, Joseph; Frantz, Jesse; Myers, Jason; Bekele, Robel; Sanghera, Jasbinder; Munday, Jeremy; Leite, Marina

    2015-03-01

    Scanning probe microscopy has been successfully implemented to probe the electrical characteristics of optoelectronic devices. Currently, a method that directly correlates measured signals to device performance is missing. We implement illuminated Kelvin probe force microscopy (KPFM) to spatially resolve the open-circuit voltage of optoelectronics with nanoscale resolution, 5 orders of magnitude better than previous methods. In illuminated-KPFM, the surface photovoltage, is the difference between the contact potential difference under illumination and in the dark, and proportional to the Fermi level splitting. We apply our imaging method to a variety of solar cells and find that the open-circuit voltage in some materials varies locally by >0.2 V, suggesting the spatial variation of non-radiative recombination strongly affects performance. A detailed examination of possible topography pick-up was excluded by measuring samples with modified surface morphology and considering the tip-sample separation dependence of the signal. This novel metrology enables new insights into the loss mechanisms that hinder solar cells and provides a new platform to image device performance with nanoscale resolution.

  7. Characterization of TCP-1 probes for molecular imaging of colon cancer.

    PubMed

    Liu, Zhonglin; Gray, Brian D; Barber, Christy; Bernas, Michael; Cai, Minying; Furenlid, Lars R; Rouse, Andrew; Patel, Charmi; Banerjee, Bhaskar; Liang, Rongguang; Gmitro, Arthur F; Witte, Marlys H; Pak, Koon Y; Woolfenden, James M

    2016-10-10

    Molecular probes capable of detecting colorectal cancer (CRC) are needed for early CRC diagnosis. The objective of this study was to characterize c[CTPSPFSHC]OH (TCP-1), a small peptide derived from phage display selection, for targeting human CRC xenografts using technetium-99m ((99m)Tc)-labeled TCP-1 and fluorescent cyanine-7 (Cy7)-labeled form of the peptide (Cy7-TCP-1). (99m)Tc-TCP-1 was generated by modifying TCP-1 with succinimidyl-6-hydrazino-nicotinamide (S-HYNIC) followed by radiolabeling. In vitro saturation binding experiments were performed for (99m)Tc-TCP-1 in human HCT116 colon cancer cells. SCID mice with human HCT116 cancer xenografts were imaged with (99m)Tc-TCP-1 or control peptide using a small-animal SPECT imager: Group I (n=5) received no blockade; Group II (n=5) received a blocking dose of non-radiolabeled TCP-1. Group III (n=5) were imaged with (99m)Tc-labeled control peptide (inactive peptide). SCID mice with human PC3 prostate cancer xenografts (Group IV, n=5) were also imaged with (99m)Tc-TCP-1. Eight additional SCID mice bearing HCT116 xenografts in dorsal skinfold window chambers (DSWC) were imaged by direct positron imaging of (18)F-fluorodeoxyglucose ((18)F-FDG) and fluorescence microscopy of Cy7-TCP-1. In vitro(99m)Tc-HYNIC-TCP-1 binding assays on HCT 116 cells indicated a mean Kd of 3.04±0.52nM. In cancer xenografts, (99m)Tc-TCP-1 radioactivity (%ID/g) was 1.01±0.15 in the absence of blockade and was reduced to 0.26±0.04 (P<0.01) with blockade. No radioactive uptake was observed in the PC3 tumors with (99m)Tc-TCP-1 or HCT116 tumors with inactive peptide. Cy7-TCP-1 activity localized not only in metabolically active tumors, as defined by (18)F-FDG imaging, but also in peritumoral microvasculature. In conclusion, TCP-1 probes may have a distinct targeting mechanism with high selectivity for CRC and tumor-associated vasculature. Molecular imaging with TCP-1 probes appears promising to detect malignant colorectal lesions.

  8. Scanned probe imaging of nanoscale magnetism at cryogenic temperatures with a single-spin quantum sensor

    NASA Astrophysics Data System (ADS)

    Pelliccione, Matthew; Jenkins, Alec; Ovartchaiyapong, Preeti; Reetz, Christopher; Emmanuelidu, Eve; Ni, Ni; Bleszynski Jayich, Ania

    The nitrogen vacancy (NV) defect in diamond has emerged as a promising candidate for high resolution magnetic imaging based on its atomic size and quantum-limited sensing capabilities afforded by long spin coherence times. Although the NV center has been successfully implemented as a nanoscale scanning magnetic probe at room temperature, it has remained an outstanding challenge to extend this capability to cryogenic temperatures, where many solid-state systems exhibit non-trivial magnetic order. In this talk, we present NV magnetic imaging at T = 6 K, first benchmarking the technique with a magnetic hard disk sample, then utilizing the technique to image vortices in the iron pnictide superconductor BaFe2(As0.7P0.3)2 with Tc = 30 K. In addition, we discuss other candidate solid-state systems that can benefit from the high spatial resolution and field sensitivity of the scanning NV magnetometer.

  9. Synthesis and Bioconjugation of Gold Nanoparticles as Potential Molecular Probes for Light-Based Imaging Techniques

    PubMed Central

    Rayavarapu, Raja Gopal; Petersen, Wilma; Ungureanu, Constantin; Post, Janine N.; van Leeuwen, Ton G.; Manohar, Srirang

    2007-01-01

    We have synthesized and characterized gold nanoparticles (spheres and rods) with optical extinction bands within the “optical imaging window.” The intense plasmon resonant driven absorption and scattering peaks of these nanoparticles make them suitable as contrast agents for optical imaging techniques. Further, we have conjugated these gold nanoparticles to a mouse monoclonal antibody specific to HER2 overexpressing SKBR3 breast carcinoma cells. The bioconjugation protocol uses noncovalent modes of binding based on a combination of electrostatic and hydrophobic interactions of the antibody and the gold surface. We discuss various aspects of the synthesis and bioconjugation protocols and the characterization results of the functionalized nanoparticles. Some proposed applications of these potential molecular probes in the field of biomedical imaging are also discussed. PMID:18354723

  10. The fine magnetic image of a high TC SQUID probe microscope

    NASA Astrophysics Data System (ADS)

    Hayashi, Tadayuki; Itozaki, Hideo

    2005-01-01

    We have developed a high TC SQUID probe microscope. A high permeability probe was used as a flux guide to improve its spatial resolution. The SQUID head with the flux guide makes it possible to measure samples with high spatial resolution in air at room temperature. The end of the flux guide and the SQUID were in vacuum with a 0.1 mm separation. The tip of the flux guide was in air. The rod diameter and length of the flux guide were 0.6 and 7 mm, respectively. The sharp tip of the flux guide required for high spatial resolution was prepared by microelectropolishing. Its tip radius was less than 1 µm. The static magnetic field pattern of magnetized toner particles was detected by this system and we obtained a high-resolution magnetic image with a spatial resolution of several microns.

  11. Highly selective "Off-On" fluorescent probe for histidine and its imaging in living cells.

    PubMed

    Chen, Tiantian; Yin, Liyan; Huang, Chusen; Qin, Yiqiao; Zhu, Weiping; Xu, Yufang; Qian, Xuhong

    2015-04-15

    A naphthalimide-based fluorescent probe CP has been synthesized with simple steps. It can selectively and sensitively recognize copper ions (Cu(2+)) in HEPES buffer (50mM, pH 7.2). The fluorescence intensity of CP is linearly proportional to the concentration of Cu(2+) ranging from 0-8.3μM (correlation coefficient R(2)=0.9808). The resulted complex CP@Cu can serve as a turn-on fluorescent probe for the detection of histidine and histidine rich proteins in broad pH application range. Upon the addition of histidine, the fluorescence intensity of CP@Cu exhibits a linear correlation with the concentration of histidine ranging from 0-200μM (correlation coefficient R(2)=0.9912). Moreover, CP@Cu has potential for imaging histidine in vitro experiments and has promise in real sample applications with great validity.

  12. Linear-array-based photoacoustic imaging of human microcirculation with a range of high frequency transducer probes

    NASA Astrophysics Data System (ADS)

    Zafar, Haroon; Breathnach, Aedán; Subhash, Hrebesh M.; Leahy, Martin J.

    2015-05-01

    Photoacoustic imaging (PAI) with a linear-array-based probe can provide a convenient means of imaging the human microcirculation within its native structural context and adds functional information. PAI using a multielement linear transducer array combined with multichannel collecting system was used for in vivo volumetric imaging of the blood microcirculation, the total concentration of hemoglobin (HbT), and the hemoglobin oxygen saturation (sO2) within human tissue. Three-dimensional (3-D) PA and ultrasound (US) volumetric scans were acquired from the forearm skin by linearly translating the transducer with a stepper motor over a region of interest, while capturing two-dimensional images using 15, 21, and 40 MHz frequency transducer probes. For the microvasculature imaging, PA images were acquired at 800- and 1064-nm wavelengths. For the HbT and sO2 estimates, PA images were collected at 750- and 850-nm wavelengths. 3-D microcirculation, HbT, and sO2 maps of the forearm skin were obtained from normal subjects. The linear-array-based PAI has been found promising in terms of resolution, imaging depth, and imaging speed for in vivo microcirculation imaging within human skin. We believe that a reflection type probe, similar to existing clinical US probes, is most likely to succeed in real clinical applications. Its advantages include ease of use, speed, and familiarity for radiographers and clinicians.

  13. Applications of the Single-probe: Mass Spectrometry Imaging and Single Cell Analysis under Ambient Conditions

    PubMed Central

    Rao, Wei; Pan, Ning; Yang, Zhibo

    2016-01-01

    Mass spectrometry imaging (MSI) and in-situ single cell mass spectrometry (SCMS) analysis under ambient conditions are two emerging fields with great potential for the detailed mass spectrometry (MS) analysis of biomolecules from biological samples. The single-probe, a miniaturized device with integrated sampling and ionization capabilities, is capable of performing both ambient MSI and in-situ SCMS analysis. For ambient MSI, the single-probe uses surface micro-extraction to continually conduct MS analysis of the sample, and this technique allows the creation of MS images with high spatial resolution (8.5 µm) from biological samples such as mouse brain and kidney sections. Ambient MSI has the advantage that little to no sample preparation is needed before the analysis, which reduces the amount of potential artifacts present in data acquisition and allows a more representative analysis of the sample to be acquired. For in-situ SCMS, the single-probe tip can be directly inserted into live eukaryotic cells such as HeLa cells, due to the small sampling tip size (< 10 µm), and this technique is capable of detecting a wide range of metabolites inside individual cells at near real-time. SCMS enables a greater sensitivity and accuracy of chemical information to be acquired at the single cell level, which could improve our understanding of biological processes at a more fundamental level than previously possible. The single-probe device can be potentially coupled with a variety of mass spectrometers for broad ranges of MSI and SCMS studies. PMID:27341402

  14. Articulated dual modality photoacoustic and optical coherence tomography probe for preclinical and clinical imaging (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Liu, Mengyang; Zabihian, Behrooz; Weingast, Jessika; Hermann, Boris; Chen, Zhe; Zhang, Edward Z.; Beard, Paul C.; Pehamberger, Hubert; Drexler, Wolfgang

    2016-03-01

    The combination of photoacoustic tomography (PAT) with optical coherence tomography (OCT) has seen steady progress over the past few years. With the benchtop and semi-benchtop configurations, preclinical and clinical results have been demonstrated, paving the way for wider applications using dual modality PAT/OCT systems. However, as for the most updated semi-benchtop PAT/OCT system which employs a Fabry-Perot polymer film sensor, it is restricted to only human palm imaging due to the limited flexibility of the probe. The passband limit of the polymer film sensor further restricts the OCT source selection and reduces the sensitivity of the combined OCT system. To tackle these issues, we developed an articulated PAT/OCT probe for both preclinical and clinical applications. In the probe design, the sample arm of OCT sub-system and the interrogation part of the PAT sub-system are integrated into one compact unit. The polymer film sensor has a quick release function so that before each OCT scan, the sensor can be taken off to avoid the sensitivity drop and artefacts in OCT. The holding mechanism of the sensor is also more compact compared to previous designs, permitting access to uneven surfaces of the subjects. With the help of the articulated probe and a patient chair, we are able to perform co-registered imaging on human subjects on both upper and lower extremities while they are at rest positions. An increase in performance characteristics is also achieved. Patients with skin diseases are currently being recruited to test its clinical feasibility.

  15. Water-soluble colorimetric and ratiometric fluorescent probe for selective imaging of palladium species in living cells.

    PubMed

    Liu, Wei; Jiang, Jie; Chen, Chunyang; Tang, Xiaoliang; Shi, Jinmin; Zhang, Peng; Zhang, Kaiming; Li, Zhiqi; Dou, Wei; Yang, Lizi; Liu, Weisheng

    2014-12-01

    A novel water-soluble colorimetric and ratiometric fluorescent probe was synthesized and applied to imaging palladium species under physiological conditions in phosphate buffered saline (PBS) containing less than 1% organic cosolvent without adding any additional reagents. Based on palladium triggered terminal propargyl ethers cleavage reaction, the probe exhibited a high selectivity and sensitivity for palladium species of all the typical oxidation states (0, +2, +4), with a low detection limit (25 nM, 2.7 μg/L) and an obvious color change. Furthermore, the probe was successfully used for ratiometric fluorescence imaging of palladium in living cells.

  16. Programmable oligonucleotide probes design and applications for in situ and in vivo RNA imaging in cells

    NASA Astrophysics Data System (ADS)

    Cheglakov, Zoya

    Unequal spreading of mRNA is a frequent experience observed in varied cell lines. The study of cellular processes dynamics and precise localization of mRNAs offers a vital toolbox to target specific proteins in precise cytoplasmic areas and provides a convenient instrument to uncover their mechanisms and functions. Latest methodological innovations have allowed imaging of a single mRNA molecule in situ and in vivo. Today, Fluorescent In Situ Hybridization (FISH) methods allow the studying of mRNA expression and offer a vital toolbox for accurate biological models. Studies enable analysis of the dynamics of an individual mRNA, have uncovered the multiplex RNA transport systems. With all current approaches, a single mRNA tracking in the mammalian cells is still challenging. This thesis describes mRNA detection methods based on programmable fluorophore-labeled DNA structures complimentary to native targets providing an accurate mRNA imaging in mammalian cells. First method represents beta-actin (ACTB) transcripts in situ detection in human cells, the technique strategy is based on programmable DNA probes, amplified by rolling circle amplification (RCA). The method reports precise localization of molecule of interest with an accuracy of a single-cell. Visualization and localization of specific endogenous mRNA molecules in real-time in vivo has the promising to innovate cellular biology studies, medical analysis and to provide a vital toolbox in drugs invention area. Second method described in this thesis represents miR-21 miRNA detection within a single live-cell resolution. The method using fluorophore-labeled short synthetic DNAs probes forming a stem-loop shape and generating Fluorescent Resonance Energy Transfer (FRET) as a result of target-probes hybridization. Catalytic nucleic acid (DNAzymes) probes are cooperative tool for precise detection of different mRNA targets. With assistance of a complementary fluorophore-quencher labeled substrate, the DNAzymes provide

  17. Targeted imaging of cancer by fluorocoxib C, a near-infrared cyclooxygenase-2 probe

    NASA Astrophysics Data System (ADS)

    Uddin, Md. Jashim; Crews, Brenda C.; Ghebreselasie, Kebreab; Daniel, Cristina K.; Kingsley, Philip J.; Xu, Shu; Marnett, Lawrence J.

    2015-05-01

    Cyclooxygenase-2 (COX-2) is a promising target for the imaging of cancer in a range of diagnostic and therapeutic settings. We report a near-infrared COX-2-targeted probe, fluorocoxib C (FC), for visualization of solid tumors by optical imaging. FC exhibits selective and potent COX-2 inhibition in both purified protein and human cancer cell lines. In vivo optical imaging shows selective accumulation of FC in COX-2-overexpressing human tumor xenografts [1483 head and neck squamous cell carcinoma (HNSCC)] implanted in nude mice, while minimal uptake is detectable in COX-2-negative tumor xenografts (HCT116) or 1483 HNSCC xenografts preblocked with the COX-2-selective inhibitor celecoxib. Time course imaging studies conducted from 3 h to 7-day post-FC injection revealed a marked reduction in nonspecific fluorescent signals with retention of fluorescence in 1483 HNSCC tumors. Thus, use of FC in a delayed imaging protocol offers an approach to improve imaging signal-to-noise that should improve cancer detection in multiple preclinical and clinical settings.

  18. Forward-viewing photoacoustic imaging probe with bundled ultra-thin hollow optical fibers

    NASA Astrophysics Data System (ADS)

    Seki, A.; Iwai, K.; Katagiri, T.; Matsuura, Y.

    2016-07-01

    A photoacoustic imaging system composed of a flexible bundle of thin hollow-optical fibers is proposed for endoscopic diagnosis. In this system, a bundle of 127 hollow-optical fibers with an inner diameter of 100 μm was fabricated. The total diameter of the bundle was 2.1 mm, and the minimum bending radius was around 10 mm. Owing to the small numerical aperture of hollow optical fibers, a high resolution image was obtained without using a lens array at the distal end. In the imaging system, the hollow fibers in the bundle were aligned at the input end, so the hollow fibers were sequentially excited by linearly scanning the laser beam at the input end. Photoacoustic imaging systems consisting of the bundled fibers for excitation of acoustic wave and piezoelectric probes for detection of photoacoustic signals were built. By using the systems, photoacoustic images of blood vessels in the ovarian membrane of fish were taken to test the feasibility of the system. As a result, photoacoustic images of the vessel were successfully obtained with a laser fluence of around 6.6 mJ cm-2.

  19. In vivo three-dimensional photoacoustic imaging based on a clinical matrix array ultrasound probe

    NASA Astrophysics Data System (ADS)

    Wang, Yu; Erpelding, Todd N.; Jankovic, Ladislav; Guo, Zijian; Robert, Jean-Luc; David, Guillaume; Wang, Lihong V.

    2012-06-01

    We present an integrated photoacoustic and ultrasonic three-dimensional (3-D) volumetric imaging system based on a two-dimensional (2-D) matrix array ultrasound probe. A wavelength-tunable dye laser pumped by a Q-switched Nd:YAG laser serves as the light source and a modified commercial ultrasound imaging system (iU22, Philips Healthcare) with a 2-D array transducer (X7-2, Philips Healthcare) detects both the pulse-echo ultrasound and photoacoustic signals. A multichannel data acquisition system acquires the RF channel data. The imaging system enables rendering of co-registered 3-D ultrasound and photoacoustic images without mechanical scanning. The resolution along the azimuth, elevation, and axial direction are measured to be 0.69, 0.90 and 0.84 mm for photoacoustic imaging. In vivo 3-D photoacoustic mapping of the sentinel lymph node was demonstrated in a rat model using methylene blue dye. These results highlight the clinical potential of 3-D PA imaging for identification of sentinel lymph nodes for cancer staging in humans.

  20. Reconstruction of Kelvin probe force microscopy image with experimentally calibrated point spread function

    NASA Astrophysics Data System (ADS)

    Lan, Fei; Jiang, Minlin; Tao, Quan; Wei, Fanan; Li, Guangyong

    2017-03-01

    A Kelvin probe force microscopy (KPFM) image is sometimes difficult to interpret because it is a blurred representation of the true surface potential (SP) distribution of the materials under test. The reason for the blurring is that KPFM relies on the detection of electrostatic force, which is a long-range force compared to other surface forces. Usually, KPFM imaging model is described as the convolution of the true SP distribution of the sample with an intrinsic point spread function (PSF) of the measurement system. To restore the true SP signals from the blurred ones, the intrinsic PSF of the system is needed. In this work, we present a way to experimentally calibrate the PSF of the KPFM system. Taking the actual probe shape and experimental parameters into consideration, this calibration method leads to a more accurate PSF than the ones obtained from simulations. Moreover, a nonlinear reconstruction algorithm based on total variation (TV) regularization is applied to KPFM measurement to reverse the blurring caused by PSF during KPFM imaging process; as a result, noises are reduced and the fidelity of SP signals is improved.

  1. Imaging ac losses in superconducting films via scanning Hall probe microscopy

    NASA Astrophysics Data System (ADS)

    Dinner, Rafael B.; Moler, Kathryn A.; Feldmann, D. Matthew; Beasley, M. R.

    2007-04-01

    Various local probes have been applied to understanding current flow through superconducting films, which are often surprisingly inhomogeneous. Here, we show that magnetic imaging allows quantitative reconstruction of both current density J and electric field E resolved in time and space in a film carrying subcritical ac current. Current reconstruction entails inversion of the Biot-Savart law, while electric fields are reconstructed using Faraday’s law. We describe the corresponding numerical procedures, largely adapting existing work to the case of a strip carrying ac current, but including other methods of obtaining the complete electric field from the inductive portion determined by Faraday’s law. We also delineate the physical requirements behind the mathematical transformations. We then apply the procedures to images of a strip of YBa2Cu3O7-δ carrying an ac current at 400Hz . Our scanning Hall probe microscope produces a time series of magnetic images of the strip with 1μm spatial resolution and 25μs time resolution. Combining the reconstructed J and E , we obtain a complete characterization including local critical current density, E-J curves, and power losses. This analysis has a range of applications from fundamental studies of vortex dynamics to practical coated conductor development.

  2. Evaluation of Potential PET Imaging Probes for the Orexin 2 Receptors

    PubMed Central

    Wang, Changning; Wilson, Colin M.; Moseley, Christian K.; Carlin, Stephen M.; Hsu, Shirley; Arabasz, Grae; Schroeder, Frederick A.; Sander, Christin Y.; Hooker, Jacob M.

    2013-01-01

    A wide range of central nervous system (CNS) disorders, particularly those related to sleep, are associated with the abnormal function of orexin (OX) receptors. Several orexin receptor antagonists have been reported in recent years, but currently there are no imaging tools to probe the density and function of orexin receptors in vivo. To date there are no published data on the pharmacokinetics (PK) and accumulation of some lead orexin receptor antagonists. Evaluation of CNS pharmacokinetics in the pursuit of positron emission tomography (PET) radiotracer development could be used to elucidate the association of orexin receptors with diseases and to facilitate the drug discovery and development. To this end, we designed and evaluated carbon-11 labeled compounds based on diazepane orexin receptor antagonists previously described. One of the synthesized compounds, [11C]CW4 showed high brain uptake in rats and further evaluated in non-human primate (NHP) using PET-MR imaging. PET scans performed in a baboon showed appropriate early brain uptake for consideration as a radiotracer. However, [11C]CW4 exhibited fast kinetics and high nonspecific binding, as determined after co-administration of [11C]CW4 and unlabeled CW4. These properties indicate that [11C]CW4 has excellent brain penetrance and could be used as a lead compound for developing new CNS-penetrant PET imaging probes of orexin receptors. PMID:23953751

  3. [Development of near-infrared fluorescent probes for in-vivo imaging].

    PubMed

    Kojima, Hirotatsu

    2008-11-01

    The number of reports on new techniques in molecular imaging has been recently increasing because of their usefulness in biological, medical, and clinical research. Fluorescence imaging methods are generally superior in terms of sensitivity, selectivity and ease of use. Cyanine dyes have been employed as fluorescent labels in fluorescence imaging studies of biological mechanisms. In particular, tricarbocyanines have the advantage that light at their emission and absorption maxima in the near-infrared (NIR) region around 650-900 nm is relatively poorly absorbed by biomolecules, and so can penetrate deeply into tissues. There is also less autofluorescence in this region. In addition to cyanine dyes for straightforward fluorescence labeling, we successfully developed cyanine dyes whose fluorescence intensity changes upon specific reaction with nitric oxide, which is an important signaling molecule involved in the regulation of a wide range of physiological and pathophysiological mechanisms, and many disorders. Then, we synthesized dipicolylcyanine (DIPCY), consisting of tricarbocyanine as a fluorophore and dipicolylethylenediamine as a heavy metal chelator, and investigated its response to various heavy metal ions. Upon addition of zinc ion, a red shift of the absorbance maximum was observed. Namely, DIPCY can work as a ratiometric fluorescent sensor for zinc ion in the NIR region. Moreover, we have recently developed several pH probes based on the amine-substituted tricarbocyanine fluorophore. We could measure pH with these fluorescent probes by a ratiometric monitoring method.

  4. Noninvasive imaging of multiple myeloma using near infrared fluorescent molecular probe

    NASA Astrophysics Data System (ADS)

    Hathi, Deep; Zhou, Haiying; Bollerman-Nowlis, Alex; Shokeen, Monica; Akers, Walter J.

    2016-03-01

    Multiple myeloma is a plasma cell malignancy characterized by monoclonal gammopathy and osteolytic bone lesions. Multiple myeloma is most commonly diagnosed in late disease stages, presenting with pathologic fracture. Early diagnosis and monitoring of disease status may improve quality of life and long-term survival for multiple myeloma patients from what is now a devastating and fatal disease. We have developed a near-infrared targeted fluorescent molecular probe with high affinity to the α4β1 integrin receptor (VLA-4)overexpressed by a majority of multiple myeloma cells as a non-radioactive analog to PET/CT tracer currently being developed for human diagnostics. A near-infrared dye that emits about 700 nm was conjugated to a high affinity peptidomimmetic. Binding affinity and specificity for multiple myeloma cells was investigated in vitro by tissue staining and flow cytometry. After demonstration of sensitivity and specificity, preclinical optical imaging studies were performed to evaluate tumor specificity in murine subcutaneous and metastatic multiple myeloma models. The VLA-4-targeted molecular probe showed high affinity for subcutaneous MM tumor xenografts. Importantly, tumor cells specific accumulation in the bone marrow of metastatic multiple myeloma correlated with GFP signal from transfected cells. Ex vivo flow cytometry of tumor tissue and bone marrow further corroborated in vivo imaging data, demonstrating the specificity of the novel agent and potential for quantitative imaging of multiple myeloma burden in these models.

  5. Synthetic aperture microwave imaging with active probing for fusion plasma diagnostics

    SciTech Connect

    Shevchenko, Vladimir F.; Freethy, Simon J.; Huang, Billy K.

    2014-08-21

    A Synthetic Aperture Microwave Imaging (SAMI) system has been designed and built to obtain 2-D images at several frequencies from fusion plasmas. SAMI uses a phased array of linearly polarised antennas. The array configuration has been optimised to achieve maximum synthetic aperture beam efficiency. The signals received by antennas are down-converted to the intermediate frequency range and then recorded in a full vector form. Full vector signals allow beam focusing and image reconstruction in both real time and a post-processing mode. SAMI can scan over 16 pre-programmed frequencies in the range of 10-35GHz with a switching time of 300ns. The system operates in 2 different modes simultaneously: both a 'passive' imaging of plasma emission and also an 'active' imaging of the back-scattered signal of the radiation launched by one of the antennas from the same array. This second mode is similar to so-called Doppler backscattering (DBS) reflectometry with 2-D resolution of the propagation velocity of turbulent structures. Both modes of operation show good performance in fusion plasma experiments on Mega Amp Spherical Tokamak (MAST). We have obtained the first ever 2-D images of BXO mode conversion windows. With active probing, first ever turbulence velocity maps have been obtained. We present an overview of the diagnostic and discuss recent results. In contrast to quasi-optical microwave imaging systems SAMI requires neither big aperture viewing ports nor large 2-D detector arrays to achieve the desired imaging resolution. The number of effective 'pixels' of the synthesized image is proportional to the number of receiving antennas squared. Thus only a small number of optimised antennas is sufficient for the majority of applications. Possible implementation of SAMI on ITERand DEMO is discussed.

  6. Fluorescence encoded super resolution imaging based on a location estimation algorithm for high-density fluorescence probes

    NASA Astrophysics Data System (ADS)

    Nishimura, Takahiro; Kimura, Hitoshi; Ogura, Yusuke; Tanida, Jun

    2016-11-01

    In this paper, we propose a fluorescence encoded super resolution technique based on an estimation algorithm to determine locations of high-density fluorescence emitters. In our method, several types of fluorescence coded probes are employed to reduce densities of target molecules labeled with individual codes. By applying an estimation algorithm to each coded image, the locations of the high density probes can be determined. Due to multiplexed fluorescence imaging, this approach will provide fast super resolution microscopy. In experiments, we evaluated the performance of the method using probes with different fluorescence wavelengths. Numerical simulation results show that the locations of probes with the density of 200 μ m^{-2} , which is a typical membrane-receptor expression level, are determined with acquisition of 16 different coded images.

  7. Introduction: feature issue on optical molecular probes, imaging, and drug delivery.

    PubMed

    Campagnola, Paul; French, Paul M W; Georgakoudi, Irene; Mycek, Mary-Ann

    2014-02-01

    The editors introduce the Biomedical Optics Express feature issue "Optical Molecular Probes, Imaging, and Drug Delivery," which is associated with a Topical Meeting of the same name held at the 2013 Optical Society of America (OSA) Optics in the Life Sciences Congress in Waikoloa Beach, Hawaii, April 14-18, 2013. The international meeting focused on the convergence of optical physics, photonics technology, nanoscience, and photochemistry with drug discovery and clinical medicine. Papers in this feature issue are representative of meeting topics, including advances in microscopy, nanotechnology, and optics in cancer research.

  8. Geometric Mechanics

    NASA Astrophysics Data System (ADS)

    Talman, Richard

    1999-10-01

    Mechanics for the nonmathematician-a modern approach For physicists, mechanics is quite obviously geometric, yet the classical approach typically emphasizes abstract, mathematical formalism. Setting out to make mechanics both accessible and interesting for nonmathematicians, Richard Talman uses geometric methods to reveal qualitative aspects of the theory. He introduces concepts from differential geometry, differential forms, and tensor analysis, then applies them to areas of classical mechanics as well as other areas of physics, including optics, crystal diffraction, electromagnetism, relativity, and quantum mechanics. For easy reference, Dr. Talman treats separately Lagrangian, Hamiltonian, and Newtonian mechanics-exploring their geometric structure through vector fields, symplectic geometry, and gauge invariance respectively. Practical perturbative methods of approximation are also developed. Geometric Mechanics features illustrative examples and assumes only basic knowledge of Lagrangian mechanics. Of related interest . . . APPLIED DYNAMICS With Applications to Multibody and Mechatronic Systems Francis C. Moon A contemporary look at dynamics at an intermediate level, including nonlinear and chaotic dynamics. 1998 (0-471-13828-2) 504 pp. MATHEMATICAL PHYSICS Applied Mathematics for Scientists and Engineers Bruce Kusse and Erik Westwig A comprehensive treatment of the mathematical methods used to solve practical problems in physics and engineering. 1998 (0-471-15431-8) 680 pp.

  9. Library Synthesis, Screening, and Discovery of Modified Zinc(II)-Bis(dipicolylamine) Probe for Enhanced Molecular Imaging of Cell Death

    PubMed Central

    2015-01-01

    Zinc(II)-bis(dipicolylamine) (Zn-BDPA) coordination complexes selectively target the surfaces of dead and dying mammalian cells, and they have promise as molecular probes for imaging cell death. A necessary step toward eventual clinical imaging applications is the development of next-generation Zn-BDPA complexes with enhanced affinity for the cell death membrane biomarker, phosphatidylserine (PS). This study employed an iterative cycle of library synthesis and screening, using a novel rapid equilibrium dialysis assay, to discover a modified Zn-BDPA structure with high and selective affinity for vesicles containing PS. The lead structure was converted into a deep-red fluorescent probe and its targeting and imaging performance was compared with an unmodified control Zn-BDPA probe. The evaluation process included a series of FRET-based vesicle titration studies, cell microscopy experiments, and rat tumor biodistribution measurements. In all cases, the modified probe exhibited comparatively higher affinity and selectivity for the target membranes of dead and dying cells. The results show that this next-generation deep-red fluorescent Zn-BDPA probe is well suited for preclinical molecular imaging of cell death in cell cultures and animal models. Furthermore, it should be possible to substitute the deep-red fluorophore with alternative reporter groups that enable clinically useful, deep-tissue imaging modalities, such as MRI and nuclear imaging. PMID:24575875

  10. Mn-doped near-infrared quantum dots as multimodal targeted probes for pancreatic cancer imaging

    NASA Astrophysics Data System (ADS)

    Yong, Ken-Tye

    2009-01-01

    This work presents a novel approach to producing manganese (Mn)-doped quantum dots (Mnd-QDs) emitting in the near-infrared (NIR). Surface functionalization of Mnd-QDs with lysine makes them stably disperse in aqueous media and able to conjugate with targeting molecules. The nanoparticles were structurally and compositionally characterized and maintained a high photoluminescence quantum yield and displayed paramagnetism in water. The receptor-mediated delivery of bioconjugated Mnd-QDs into pancreatic cancer cells was demonstrated using the confocal microscopy technique. Cytotoxicity of Mnd-QDs on live cells has been evaluated. The NIR-emitting characteristic of the QDs has been exploited to acquire whole animal body imaging with high contrast signals. In addition, histological and blood analysis of mice have revealed that no long-term toxic effects arise from MnD-QDs. These studies suggest multimodal Mnd-QDs have the potentials as probes for early pancreatic cancer imaging and detection.

  11. Cysteine cathepsins: their role in tumor progression and recent trends in the development of imaging probes

    NASA Astrophysics Data System (ADS)

    Löser, Reik; Pietzsch, Jens

    2015-06-01

    Papain-like cysteine proteases bear an enormous potential as drug discovery targets for both infectious and systemic human diseases. The considerable progress in this field over the last two decades has also raised interest in the visualization of these enzymes in their native context, especially with regard to tumor imaging. After a short introduction to structure and general functions of human cysteine cathepsins, we highlight their importance for drug discovery and development and provide a critical update on the current state of knowledge towards their involvement in tumor progression, with a special emphasis on their role in therapy response. In accordance with a radiopharmaceutical point of view, the main focus of this review article will be the discussion of recently developed fluorescence and radiotracer-based imaging agents together with related molecular probes.

  12. MRT letter: An extended scanning probe microscopy system for macroscopic topography imaging.

    PubMed

    Fu, Ji; Li, Faxin

    2014-10-01

    Enlightened by the principle of scanning probe microscopy or atomic force microscope (AFM), we proposed a novel surface topography imaging system based on the scanning of a piezoelectric unimorph cantilever. The height of sample surface can be obtained by recording the cantilever's strain using an ultra-sensitive strain gauge and the Z-axis movement is realized by electric bending of the cantilever. This system can be operated in the way similar to the contact mode in AFM, with the practical height detection resolution better than 100 nm. Imaging of the inner surface of a steel tube and on a transparent wing of a honey bee were conducted and the obtained results showed that this proposed system is a very promising solution for in situ topography mapping.

  13. Cysteine cathepsins: their role in tumor progression and recent trends in the development of imaging probes

    PubMed Central

    Löser, Reik; Pietzsch, Jens

    2015-01-01

    Papain-like cysteine proteases bear an enormous potential as drug discovery targets for both infectious and systemic human diseases. The considerable progress in this field over the last two decades has also raised interest in the visualization of these enzymes in their native context, especially with regard to tumor imaging. After a short introduction to structure and general functions of human cysteine cathepsins, we highlight their importance for drug discovery and development and provide a critical update on the current state of knowledge toward their involvement in tumor progression, with a special emphasis on their role in therapy response. In accordance with a radiopharmaceutical point of view, the main focus of this review article will be the discussion of recently developed fluorescence and radiotracer-based imaging agents together with related molecular probes. PMID:26157794

  14. In vitro angioplasty of atherosclerotic human femoral arteries: analysis of the geometrical changes in the individual tissues using MRI and image processing.

    PubMed

    Auer, Martin; Stollberger, Rudolf; Regitnig, Peter; Ebner, Franz; Holzapfel, Gerhard A

    2010-04-01

    Existing atherosclerotic plaque imaging techniques such as intravascular ultrasound, multidetector computed tomography, optical coherence tomography, and high-resolution magnetic resonance imaging (hrMRI) require computerized methods to separate and analyze the plaque morphology. In this work, we perform in vitro balloon angioplasty experiments with 10 human femoral arteries using hrMRI and image processing. The vessel segments contain low-grade to high-grade lesions with very different plaque compositions. The experiments are designed to mimic the in vivo situation. We use a semi-automatic image processing tool to extract the three-dimensional (3D) geometries of the tissue components at four characteristic stages of the angioplasty procedure. The obtained geometries are then used to determine geometrical and mechanical indices in order to characterize, classify, and analyze the atherosclerotic plaques by their specific geometrical changes. During inflation, three vessels ruptured via helical crack propagation. The adventitia, media, and intima did not preserve their area/volume during inflation; the area changes of the lipid pool during inflation were significant. The characterization of changes in individual 3D tissue geometries, together with tissue-specific mechanical properties, may serve as a basis for refined finite element (FE) modeling, which is key to better understand stress evolution in various atherosclerotic plaque configurations.

  15. Reaction-Based Probes for Imaging Mobile Zinc in Live Cells and Tissues

    PubMed Central

    2015-01-01

    Chelatable, or mobile, forms of zinc play critical signaling roles in numerous biological processes. Elucidating the action of mobile Zn(II) in complex biological environments requires sensitive tools for visualizing, tracking, and manipulating Zn(II) ions. A large toolbox of synthetic photoinduced electron transfer (PET)-based fluorescent Zn(II) sensors are available, but the applicability of many of these probes is limited by poor zinc sensitivity and low dynamic ranges owing to proton interference. We present here a general approach for acetylating PET-based probes containing a variety of fluorophores and zinc-binding units. The new sensors provide substantially improved zinc sensitivity and allow for incubation of live cells and tissue slices with nM probe concentrations, a significant improvement compared to the μM concentrations that are typically required for a measurable fluorescence signal. Acetylation effectively reduces or completely quenches background fluorescence in the metal-free sensor. Binding of Zn(II) selectively and quickly mediates hydrolytic cleavage of the acetyl groups, providing a large fluorescence response. An acetylated blue coumarin-based sensor was used to carry out detailed analyses of metal binding and metal-promoted acetyl hydrolysis. Acetylated benzoresorufin-based red-emitting probes with different zinc-binding sites are effective for sensing Zn(II) ions in live cells when applied at low concentrations (∼50–100 nM). We used green diacetylated Zinpyr1 (DA-ZP1) to image endogenous mobile Zn(II) in the molecular layer of mouse dorsal cochlear nucleus (DCN), confirming that acetylation is a suitable approach for preparing sensors that are highly specific and sensitive to mobile zinc in biological systems. PMID:26878065

  16. [18F]CFA as a clinically translatable probe for PET imaging of deoxycytidine kinase activity

    PubMed Central

    Kim, Woosuk; Le, Thuc M.; Wei, Liu; Poddar, Soumya; Bazzy, Jimmy; Wang, Xuemeng; Uong, Nhu T.; Abt, Evan R.; Capri, Joseph R.; Austin, Wayne R.; Van Valkenburgh, Juno S.; Steele, Dalton; Gipson, Raymond M.; Slavik, Roger; Cabebe, Anthony E.; Taechariyakul, Thotsophon; Yaghoubi, Shahriar S.; Lee, Jason T.; Sadeghi, Saman; Lavie, Arnon; Faull, Kym F.; Witte, Owen N.; Donahue, Timothy R.; Phelps, Michael E.; Herschman, Harvey R.; Herrmann, Ken; Czernin, Johannes; Radu, Caius G.

    2016-01-01

    Deoxycytidine kinase (dCK), a rate-limiting enzyme in the cytosolic deoxyribonucleoside (dN) salvage pathway, is an important therapeutic and positron emission tomography (PET) imaging target in cancer. PET probes for dCK have been developed and are effective in mice but have suboptimal specificity and sensitivity in humans. To identify a more suitable probe for clinical dCK PET imaging, we compared the selectivity of two candidate compounds—[18F]Clofarabine; 2-chloro-2′-deoxy-2′-[18F]fluoro-9-β-d-arabinofuranosyl-adenine ([18F]CFA) and 2′-deoxy-2′-[18F]fluoro-9-β-d-arabinofuranosyl-guanine ([18F]F-AraG)—for dCK and deoxyguanosine kinase (dGK), a dCK-related mitochondrial enzyme. We demonstrate that, in the tracer concentration range used for PET imaging, [18F]CFA is primarily a substrate for dCK, with minimal cross-reactivity. In contrast, [18F]F-AraG is a better substrate for dGK than for dCK. [18F]CFA accumulation in leukemia cells correlated with dCK expression and was abrogated by treatment with a dCK inhibitor. Although [18F]CFA uptake was reduced by deoxycytidine (dC) competition, this inhibition required high dC concentrations present in murine, but not human, plasma. Expression of cytidine deaminase, a dC-catabolizing enzyme, in leukemia cells both in cell culture and in mice reduced the competition between dC and [18F]CFA, leading to increased dCK-dependent probe accumulation. First-in-human, to our knowledge, [18F]CFA PET/CT studies showed probe accumulation in tissues with high dCK expression: e.g., hematopoietic bone marrow and secondary lymphoid organs. The selectivity of [18F]CFA for dCK and its favorable biodistribution in humans justify further studies to validate [18F]CFA PET as a new cancer biomarker for treatment stratification and monitoring. PMID:27035974

  17. [18F]CFA as a clinically translatable probe for PET imaging of deoxycytidine kinase activity.

    PubMed

    Kim, Woosuk; Le, Thuc M; Wei, Liu; Poddar, Soumya; Bazzy, Jimmy; Wang, Xuemeng; Uong, Nhu T; Abt, Evan R; Capri, Joseph R; Austin, Wayne R; Van Valkenburgh, Juno S; Steele, Dalton; Gipson, Raymond M; Slavik, Roger; Cabebe, Anthony E; Taechariyakul, Thotsophon; Yaghoubi, Shahriar S; Lee, Jason T; Sadeghi, Saman; Lavie, Arnon; Faull, Kym F; Witte, Owen N; Donahue, Timothy R; Phelps, Michael E; Herschman, Harvey R; Herrmann, Ken; Czernin, Johannes; Radu, Caius G

    2016-04-12

    Deoxycytidine kinase (dCK), a rate-limiting enzyme in the cytosolic deoxyribonucleoside (dN) salvage pathway, is an important therapeutic and positron emission tomography (PET) imaging target in cancer. PET probes for dCK have been developed and are effective in mice but have suboptimal specificity and sensitivity in humans. To identify a more suitable probe for clinical dCK PET imaging, we compared the selectivity of two candidate compounds-[(18)F]Clofarabine; 2-chloro-2'-deoxy-2'-[(18)F]fluoro-9-β-d-arabinofuranosyl-adenine ([(18)F]CFA) and 2'-deoxy-2'-[(18)F]fluoro-9-β-d-arabinofuranosyl-guanine ([(18)F]F-AraG)-for dCK and deoxyguanosine kinase (dGK), a dCK-related mitochondrial enzyme. We demonstrate that, in the tracer concentration range used for PET imaging, [(18)F]CFA is primarily a substrate for dCK, with minimal cross-reactivity. In contrast, [(18)F]F-AraG is a better substrate for dGK than for dCK. [(18)F]CFA accumulation in leukemia cells correlated with dCK expression and was abrogated by treatment with a dCK inhibitor. Although [(18)F]CFA uptake was reduced by deoxycytidine (dC) competition, this inhibition required high dC concentrations present in murine, but not human, plasma. Expression of cytidine deaminase, a dC-catabolizing enzyme, in leukemia cells both in cell culture and in mice reduced the competition between dC and [(18)F]CFA, leading to increased dCK-dependent probe accumulation. First-in-human, to our knowledge, [(18)F]CFA PET/CT studies showed probe accumulation in tissues with high dCK expression: e.g., hematopoietic bone marrow and secondary lymphoid organs. The selectivity of [(18)F]CFA for dCK and its favorable biodistribution in humans justify further studies to validate [(18)F]CFA PET as a new cancer biomarker for treatment stratification and monitoring.

  18. Probing for Exoplanets Hiding in Dusty Debris Disks: Inner (<10 AU) Disk Imaging, Characterization, and Exploration

    NASA Astrophysics Data System (ADS)

    Schneider, Glenn; HST GO 12228 Team

    2011-01-01

    We are obtaining HST/STIS observations of a well-selected sample of eleven circumstellar (CS) debris disks, all with HST pedigree, using PSF-subtracted multi-roll coronagraphic imaging. Our observations are probing the interior CS regions of these debris systems (inner working distances < approximately 8 AU for half the sample), corresponding to the giant planet and Kuiper belt regions within our own solar system. These images will enable us to: (a) directly inter-compare the architectures of these exoplanetary debris systems in the context of our own Solar System, (b) characterize the material in these regions at high spatial resolution and, (c) look for sub-structures within the disks that are sign posts of planetary formation and evolution; in particular, asymmetries and non-uniform debris structures signaling the presence of co-orbiting perturbing planets. All of our objects were previously observed at longer wavelengths (with lower spatial resolution and imaging efficacy) with NICMOS, but with an inner working angle comparable to STIS multi-roll coronagraphy. The combination of new optical and existing near-IR imaging will strongly constrain the dust properties enabling an assessment of grain processing and planetesimal populations. These results will directly inform upon the posited planet formation mechanisms that occur after the approximately 10 My epoch of gas depletion (a time in our solar system when giant planets were migrating and the terrestrial planets were forming) and directly test theoretical models of these processes. The outer reaches (only) of most of these systems were previously observed with a much larger ( 6x on average), spatially limiting, effective inner working angle of the ACS coronagraph and do not reveal the inner structures of these CS disks. Our investigation will uniquely probe into the interior regions of these systems for the first time with spatial resolution comparable to ACS and with augmenting NICMOS near-IR disk photometry

  19. Ultrahigh relaxivity and safe probes of manganese oxide nanoparticles for in vivo imaging

    PubMed Central

    Xiao, J.; Tian, X. M.; Yang, C.; Liu, P.; Luo, N. Q.; Liang, Y.; Li, H. B.; Chen, D. H.; Wang, C. X.; Li, L.; Yang, G. W.

    2013-01-01

    Mn-based nanoparticles (NPs) have emerged as new class of probes for magnetic resonance imaging due to the impressive contrast ability. However, the reported Mn-based NPs possess low relaxivity and there are no immunotoxicity data regarding Mn-based NPs as contrast agents. Here, we demonstrate the ultrahigh relaxivity of water protons of 8.26 mM−1s−1 from the Mn3O4 NPs synthesized by a simple and green technique, which is twice higher than that of commercial gadolinium (Gd)-based contrast agents (4.11 mM−1s−1) and the highest value reported to date for Mn-based NPs. We for the first time demonstrate these Mn3O4 NPs biocompatibilities both in vitro and in vivo are satisfactory based on systematical studies of the intrinsic toxicity including cell viability of human nasopharyngeal carcinoma cells, normal nasopharyngeal epithelium, apoptosis in cells and in vivo immunotoxicity. These findings pave the way for the practical clinical diagnosis of Mn based NPs as safe probes for in vivo imaging. PMID:24305731

  20. Proton-Electron Double-Resonance Imaging of pH using phosphonated trityl probe

    PubMed Central

    Takahashi, Wataru; Bobko, Andrey A.; Dhimitruka, Ilirian; Hirata, Hiroshi; Zweier, Jay L.; Samouilov, Alexandre

    2014-01-01

    Variable Radio Frequency Proton-Electron Double-Resonance Imaging (VRF PEDRI) enables extracting a functional map from a limited number of images acquired at pre-selected EPR frequencies using specifically designed paramagnetic probes with high quality spatial resolution and short acquisition times. In this work we explored potential of VRF PEDRI for pH mapping of aqueous samples using recently synthesized pH-sensitive phosphonated trityl radical, pTR. The ratio of Overhauser enhancements measured at each pixel at two different excitation frequencies corresponding to the resonances of protonated and deprotonated forms of pTR probe allows for a pH map extraction. Long relaxation times of pTR allow for pH mapping at EPR irradiation power as low as 1.25 W during 130 s acquisition time with spatial resolution of about 1 mm. This is particularly important for in vivo applications enabling one to avoid sample overheating by reducing RF power deposition. PMID:25530673

  1. Electronic dynamics in helium nanodroplets studied via femtosecond XUV pump / UV probe photoelectron imaging

    NASA Astrophysics Data System (ADS)

    Ziemkiewicz, Michael; Bacellar, Camila; Leone, Stephen; Neumark, Daniel; Gessner, Oliver

    2014-05-01

    Superfluid helium nanodroplets consisting of ~ 2 × 106 atoms are examined using femtosecond time-resolved photoelectron imaging. The droplets are excited by a 23.6(2) eV extreme ultraviolet (XUV) pulse in resonance with an electronically excited band associated largely with the 1s3p Rydberg level of free He atoms. Relaxation dynamics are monitored by ionizing transient states with a 3.2 eV probe pulse and measuring the time-dependent photoelectron kinetic energy distributions using velocity map imaging (VMI). A broad, intense signal associated with the initially excited 1s3p band (Ekin ~ 2.5 eV) appears within the experimental time resolution and decays within 190(70) fs. Concomitantly, a second photoelectron feature with kinetic energies ranging from 0 to 0.5 eV appears on a time scale of ~ 200 fs. The new feature is identified as originating from the 1s2p droplet Rydberg band, indicating the direct observation of a previously suggested interband relaxation within the droplet. This feature also decays within ~ 200 fs, likely due to intraband relaxation within the 1s2p/1s2s manifold to states which are too deeply bound to be ionized by the 3.2 eV probe pulse.

  2. Photophysics of Fluorescent Probes for Single-Molecule Biophysics and Super-Resolution Imaging

    NASA Astrophysics Data System (ADS)

    Ha, Taekjip; Tinnefeld, Philip

    2012-05-01

    Single-molecule fluorescence spectroscopy and super-resolution microscopy are important elements of the ongoing technical revolution to reveal biochemical and cellular processes in unprecedented clarity and precision. Demands placed on the photophysical properties of the fluorophores are stringent and drive the choice of appropriate probes. Such fluorophores are not simple light bulbs of a certain color and brightness but instead have their own “personalities” regarding spectroscopic parameters, redox properties, size, water solubility, photostability, and several other factors. Here, we review the photophysics of fluorescent probes, both organic fluorophores and fluorescent proteins, used in applications such as particle tracking, single-molecule FRET, stoichiometry determination, and super-resolution imaging. Of particular interest is the thiol-induced blinking of Cy5, a curse for single-molecule biophysical studies that was later overcome using Trolox through a reducing/oxidizing system but a boon for super-resolution imaging owing to the controllable photoswitching. Understanding photophysics is critical in the design and interpretation of single-molecule experiments.

  3. Photophysics of Fluorescence Probes for Single Molecule Biophysics and Super-Resolution Imaging

    PubMed Central

    Ha, Taekjip; Tinnefeld, Philip

    2013-01-01

    Single-molecule fluorescence spectroscopy and super-resolution microscopy are important elements of the ongoing technical revolution to reveal biochemical and cellular processes in unprecedented clarity and precision. Demands placed on the photophysical properties of the fluorophores are stringent and drive the choice of appropriate probes. Such fluorophores are not simple light bulbs of certain color and brightness but instead have their own ‘personalities’ regarding spectroscopic parameters, redox properties, size and water solubility, photostability and several more. Here, we review the photophysics of fluorescent probes, both organic fluorophores and fluorescent proteins, used in applications such as particle tracking, single molecule FRET, stoichiometry determination, and super-resolution imaging. Of particular interest is the thiol-induced blinking of Cy5, a curse for single molecule biophysical studies which was later overcome using Trolox through reducing/oxidizing system, but a boon for super-resolution imaging due to the controllable photoswitching. Understanding photophysics is critical in design and interpreting single molecule experiments. PMID:22404588

  4. Flexible micro-OCT endobronchial probe for imaging of mucociliary transport (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Cui, Dongyao; Chu, Kengyeh K.; Unglert, Carolin I.; Ford, Tim N.; Carruth, Robert W.; Hyun, Daryl; Singh, Kanwarpal; Birket, Susan E.; Solomon, George M.; Rowe, Steve M.; Tearney, Guillermo J.

    2016-03-01

    Mucociliary clearance (MCC) plays a significant role in maintaining the health of human respiratory system by eliminating foreign particles trapped within mucus. Failure of this mechanism in diseases such as cystic fibrosis and chronic obstructive pulmonary disease (COPD) leads to airway blockage and lung infection, causing morbidity and mortality. The volume of airway mucus and the periciliary liquid encapsulating the cilia, in addition to ciliary beat frequency and velocity of mucociliary transport, are vital parameters of airway health. However, the diagnosis of disease pathogenesis and advances of novel therapeutics are hindered by the lack of tools for visualization of ciliary function in vivo. Our laboratory has previously developed a 1-µm resolution optical coherence tomography method, termed Micro-OCT, which is capable of visualizing mucociliary transport and quantitatively capturing epithelial functional metrics. We have also miniaturized Micro-OCT optics in a first-generation rigid 4mm Micro-OCT endoscope utilizing a common-path design and an apodizing prism configuration to produce an annular profile sample beam, and reported the first in vivo visualization of mucociliary transport in swine. We now demonstrate a flexible 2.5 mm Micro-OCT probe that can be inserted through the instrument channel of standard flexible bronchoscopes, allowing bronchoscopic navigation to smaller airways and greatly improving clinical utility. Longitudinal scanning over a field of view of more than 400 µm at a frame rate of 40 Hz was accomplished with a driveshaft transduced by a piezo-electric stack motor. We present characterization and imaging results from the flexible micro-OCT probe and progress towards clinical translation. The ability of the bronchoscope-compatible micro-OCT probe to image mucus clearance and epithelial function will enable studies of cystic fibrosis pathogenesis in small airways, provide diagnosis of mucociliary clearance disorders, and allow

  5. Optimized multimodal functional magnetic resonance imaging/near-infrared spectroscopy probe for ultrahigh-resolution mapping

    PubMed Central

    Hocke, Lia Maria; Cayetano, Kenroy; Tong, Yunjie; Frederick, Blaise

    2015-01-01

    Abstract. Functional near-infrared spectroscopy (fNIRS) is an increasingly important noninvasive method in neuroscience due to its high temporal resolution and ability to independently measure oxy- and deoxy-hemoglobin. However, the relatively low spatial resolution of fNIRS makes it difficult to relate this signal to underlying anatomy. Simultaneous functional magnetic resonance imaging (fMRI) can complement fNIRS with superior spatial resolution and the ability to image the entire brain, providing additional information to improve fNIRS localization. However, current simultaneous fMRI/fNIRS acquisition methods are not optimal, due to the poor physical compatibility of existing MR coils and fNIRS optodes. Here, we present a technique to manufacture a true multimodal fMRI/fNIRS probe in which both modalities can be used with maximal sensitivity. To achieve this, we designed custom MR coils with integral fNIRS optodes using three-dimensional printing. This multimodal probe can be used to optimize spatial (1.2×1.2×1.8  mm) and temporal resolution (2.5 Hz) of fMRI, and it provides maximal MRI sensitivity, while allowing for high flexibility in the location and density of fNIRS optodes within the area of interest. Phantom and human data are shown to confirm the improvement in sensitivity in both modalities. This probe shows promise for addressing fundamental questions of the relation of fNIRS to physiology. PMID:26668816

  6. The Scanning Mass Spectrometry Probe: A Scanning Probe Electrospray Ion Source for Imaging Mass Spectrometry of Submerged Interfaces and Transient Events in Solution

    PubMed Central

    Kottke, Peter A.; Degertekin, F. Levent; Fedorov, Andrei G.

    2009-01-01

    The scanning mass spectrometry (SMS) probe is new electrospray ion source. Motivated by the need for untargeted chemical imaging of dynamic events in solution, we have exploited an approach to electrospray ionization (ESI) that allows continuous sampling from a highly localized volume (~picoliters) in a liquid environment, softly ionizes molecules in the sample to render them amenable for mass spectrometric analysis, and sends the ions to the mass spectrometer. The key underlying concepts for our approach are1)Treating the electrospray capillary inlet as a chemical scanning probe, and2)Locating the electrospray point as close as possible to the sampling point, thus providing the shortest response time possible. This approach enables chemical monitoring or imaging of submerged interfaces, providing access to details of spatial heterogeneity and temporal changes within liquid samples. It also permits direct access to liquid/ liquid interfaces for ESI-MS analysis. In this Letter we report the first demonstrations of these capabilities of the SMS probe, and describe some of the probe's basic characteristics. PMID:19904914

  7. SU-E-J-205: Monte Carlo Modeling of Ultrasound Probes for Real-Time Ultrasound Image-Guided Radiotherapy

    SciTech Connect

    Hristov, D; Schlosser, J; Bazalova, M; Chen, J

    2014-06-01

    Purpose: To quantify the effect of ultrasound (US) probe beam attenuation for radiation therapy delivered under real-time US image guidance by means of Monte Carlo (MC) simulations. Methods: MC models of two Philips US probes, an X6-1 matrix-array transducer and a C5-2 curved-array transducer, were built based on their CT images in the EGSnrc BEAMnrc and DOSXYZnrc codes. Due to the metal parts, the probes were scanned in a Tomotherapy machine with a 3.5 MV beam. Mass densities in the probes were assigned based on an electron density calibration phantom consisting of cylinders with mass densities between 0.2–8.0 g/cm{sup 3}. Beam attenuation due to the probes was measured in a solid water phantom for a 6 MV and 15 MV 15x15 cm{sup 2} beam delivered on a Varian Trilogy linear accelerator. The dose was measured with the PTW-729 ionization chamber array at two depths and compared to MC simulations. The extreme case beam attenuation expected in robotic US image guided radiotherapy for probes in upright position was quantified by means of MC simulations. Results: The 3.5 MV CT number to mass density calibration curve was found to be linear with R{sup 2} > 0.99. The maximum mass densities were 4.6 and 4.2 g/cm{sup 3} in the C5-2 and X6-1 probe, respectively. Gamma analysis of the simulated and measured doses revealed that over 98% of measurement points passed the 3%/3mm criteria for both probes and measurement depths. The extreme attenuation for probes in upright position was found to be 25% and 31% for the C5-2 and X6-1 probe, respectively, for both 6 and 15 MV beams at 10 cm depth. Conclusion: MC models of two US probes used for real-time image guidance during radiotherapy have been built. As a Result, radiotherapy treatment planning with the imaging probes in place can now be performed. J Schlosser is an employee of SoniTrack Systems, Inc. D Hristov has financial interest in SoniTrack Systems, Inc.

  8. Long-circulating iodinated albumin-gadolinium nanoparticles as enhanced magnetic resonance and computed tomography imaging probes for osteosarcoma visualization.

    PubMed

    Wang, Qianliang; Lv, Ling; Ling, Zhuoyan; Wang, Yangyun; Liu, Yujing; Li, Liubing; Liu, Guodong; Shen, Liqin; Yan, Jun; Wang, Yong

    2015-04-21

    Multimodal imaging probes represent an extraordinary tool for accurate diagnosis of diseases due to the complementary advantages of multiple imaging modalities. The purpose of the work was to fabricate a simple dual-modality MR/CT probe for osteosarcoma visualization in vivo. Protein-directed synthesis methods offer a suitable alternative to MR/CT probe produced by synthetic chemistry. Bovine serum albumin (BSA) bound to gadolinium nanoparticles (GdNPs) was first prepared via a biomimetic synthesis method and was subsequently iodinated by chloramine-T method. The final iodinated BSA-GdNPs (I-BSA-GdNPs) showed excellent chemical stability and biocompatibility, intense X-ray attenuation coefficient, and good MR imaging ability. However, an iodinated protein nanoparticles synthesis for MR/CT imaging, as well as its useful application, has not been reported yet. Intravenous injection of I-BSA-GdNPs into orthotopic osteosarcoma-bearing rats led to its accumulation and retention by the tumor, allowing for a noninvasive tumor dual-modality imaging through the intact thigh. The long-circulating dual-model I-BSA-GdNPs probes possess potential application for image-guided drug delivery and image-guided surgery. Our study is therefore highlighting the properties of albumin in this field combined with its useful use in dual-model MR/CT osteosarcoma visualization, underlining its potential use as a drug carrier for a future therapy on cancer.

  9. Flexible, high-resolution micro-optical coherence tomography endobronchial probe toward in vivo imaging of cilia.

    PubMed

    Cui, Dongyao; Chu, Kengyeh K; Yin, Biwei; Ford, Timothy N; Hyun, Chulho; Leung, Hui Min; Gardecki, Joseph A; Solomon, George M; Birket, Susan E; Liu, Linbo; Rowe, Steven M; Tearney, Guillermo J

    2017-02-15

    We report the design and fabrication of a flexible, longitudinally scanning high-resolution micro-optical coherence tomography (μOCT) endobronchial probe, optimized for micro-anatomical imaging in airways. The 2.4 mm diameter and flexibility of the probe allows it to be inserted into the instrument channel of a standard bronchoscope, enabling real-time video guidance of probe placement. To generate a depth-of-focus enhancing annular beam, we utilized a new fabrication method, whereby a hollow glass ferrule was angle-polished and gold-coated to produce an elongated annular reflector. We present validation data that verifies the preservation of linear scanning, despite the use of flexible materials. When utilized on excised, cultured mouse trachea, the probe acquired images of comparable quality to those obtained by a benchtop μOCT system.

  10. Hand-held optoacoustic probe for three-dimensional imaging of human morphology and function

    NASA Astrophysics Data System (ADS)

    Deán-Ben, X. Luís.; Razansky, Daniel

    2014-03-01

    We report on a hand-held imaging probe for real-time optoacoustic visualization of deep tissues in three dimensions. The proposed solution incorporates a two-dimensional array of ultrasonic sensors densely distributed on a spherical surface, whereas illumination is performed coaxially through a cylindrical cavity in the array. Visualization of three-dimensional tomographic data at a frame rate of 10 images per second is enabled by parallel recording of 256 time-resolved signals for each individual laser pulse along with a highly efficient GPUbased real-time reconstruction. A liquid coupling medium (water), enclosed in a transparent membrane, is used to guarantee transmission of the optoacoustically generated waves to the ultrasonic detectors. Excitation at multiple wavelengths further allows imaging spectrally distinctive tissue chromophores such as oxygenated and deoxygenated haemoglobin. The performance is showcased by video-rate tracking of deep tissue vasculature and three-dimensional measurements of blood oxygenenation in a healthy human volunteer. The flexibility provided by the hand-held hardware design, combined with the real-time operation, makes the developed platform highly usable for both small animal research and clinical imaging in multiple indications, including cancer, inflammation, skin and cardiovascular diseases, diagnostics of lymphatic system and breast

  11. Scanned probe imaging of nanoscale magnetism at cryogenic temperatures with a single-spin quantum sensor.

    PubMed

    Pelliccione, Matthew; Jenkins, Alec; Ovartchaiyapong, Preeti; Reetz, Christopher; Emmanouilidou, Eve; Ni, Ni; Bleszynski Jayich, Ania C

    2016-08-01

    High-spatial-resolution magnetic imaging has driven important developments in fields ranging from materials science to biology. However, to uncover finer details approaching the nanoscale with greater sensitivity requires the development of a radically new sensor technology. The nitrogen-vacancy (NV) defect in diamond has emerged as a promising candidate for such a sensor on the basis of its atomic size and quantum-limited sensing capabilities. It has remained an outstanding challenge to implement the NV centre as a nanoscale scanning magnetic probe at cryogenic temperatures, however, where many solid-state systems exhibit non-trivial magnetic order. Here, we present NV magnetic imaging down to 6 K with 3 μT Hz(-1/2) field sensitivity, and use the technique to image vortices in the iron pnictide superconductor BaFe2(As0.7P0.3)2 with critical temperature Tc = 30 K. The expansion of NV-based magnetic imaging to cryogenic temperatures will enable future studies of previously inaccessible nanoscale magnetism in condensed-matter systems.

  12. Stability limits and defect dynamics in Ag nanoparticles probed by Bragg coherent diffractive imaging

    DOE PAGES

    Liu, Y.; Lopes, P. P.; Cha, W.; ...

    2017-02-10

    Dissolution is critical to nanomaterial stability, especially for partially dealloyed nanoparticle catalysts. Unfortunately, highly active catalysts are often not stable in their reactive environments, preventing widespread application. Thus, focusing on the structure–stability relationship at the nanoscale is crucial and will likely play an important role in meeting grand challenges. Recent advances in imaging capability have come from electron, X-ray, and other techniques but tend to be limited to specific sample environments and/or two-dimensional images. Here, we report investigations into the defect-stability relationship of silver nanoparticles to voltage-induced electrochemical dissolution imaged in situ in three dimensional detail by Bragg coherent diffractivemore » imaging. We first determine the average dissolution kinetics by stationary probe rotating disk electrode in combination with inductively coupled plasma mass spectrometry, which allows in situ measurement of Ag+ ion formation. We then observe the dissolution and redeposition processes in single nanocrystals, providing unique insight about the role of surface strain, defects, and their coupling to the dissolution chemistry. Finally, the methods developed and the knowledge gained go well beyond a “simple” silver electrochemistry and are applicable to all electrocatalytic reactions where functional links between activity and stability are controlled by structure and defect dynamics.« less

  13. First Results from the Descent Imager/Spectral Radiometer (DISR) Experiment on the Huygens Entry Probe of Titan

    NASA Technical Reports Server (NTRS)

    Tomasko, M. G.; Doose, L. R.; Rizk, B.; Smith, P.; See, C.; Bushroe, M.; McFarlane, L.; Engel, S.; Eibl, A.; Karkoschka, E.

    2005-01-01

    The Cassini-Huygens mission was launched on October 15, 1997, and arrived in Orbit around Saturn in July, 2004. The Huygens Probe was released from the Cassini Orbiter on December 24, 2004 and entered Titan s atmosphere on January 14, 2005. Here we give the first results from the Descent Imager/Spectral Radiometer (DISR) instrument aboard the Huygens Probe during its descent into the atmosphere of Titan. Measurements were made by several different optical systems and sensors.

  14. Probing for Exoplanets Hiding in Dusty Debris Disks: Inner {<10 AU} Disk Imaging, Characterization, and Exploration

    NASA Astrophysics Data System (ADS)

    Schneider, Glenn

    2010-09-01

    We propose new visible-light observations of a well-selected sample of circumstellar {CS} debris disks, all with HST pedigree, using STIS PSF-subtracted multi-roll coronagraphic imaging. Our new observations will probe the interior CS regions of these debris systems {with inner working distances of < approximately 8 AU for half the stars in this sample}, corresponding to the giant planet and Kuiper belt regions within our own solar system. These new images will enable us to directly inter-compare the architectures of these exoplanetary debris systems in the context of our own Solar System. These observations will also permit us, for the first time, to characterize the material in these regions at high spatial resolution and to look for sub-structures within the disks that are the sign posts of planetary formation and evolution; in particular, asymmetries and non-uniform debris structures signal the presence of co-orbiting perturbing planets. Additionally, all of our objects have been observed previously at longer wavelengths {but much lower spatial resolution and imaging efficacy} with NICMOS, but with an inner working angle comparable to STIS multi-roll coronagraphy. The combination of new optical and existing near-IR imaging will strongly constrain the dust properties, thus enabling an assessment of grain processing and planetesimal populations. These results will directly inform upon the posited planet formation mechanisms that occur after the 10 My epoch of gas depletion, at a time in our solar system when giant planets were migrating and the terrestrial planets were forming, and directly test theoretical models of these processes. The outer reaches {only} of most of these systems were previously observed with a much larger { 6x on average}, spatially limiting, effective inner working angle of the ACS coronagraph. The previous ACS images are therefore completely inadequate to address our science goals of imaging the inner structures of these CS disks. Our

  15. Superior sensitivity of novel molecular imaging probe: simultaneously targeting two types of endothelial injury markers

    PubMed Central

    Sun, Dawei; Nakao, Shintaro; Xie, Fang; Zandi, Souska; Schering, Alexander; Hafezi-Moghadam, Ali

    2010-01-01

    The need remains great for early diagnosis of diseases. The special structure of the eye provides a unique opportunity for noninvasive light-based imaging of fundus vasculature. To detect endothelial injury at the early and reversible stage of adhesion molecule up-regulation, we generated novel imaging agents that target two distinct types of endothelial molecules, a mediator of rolling, P-selectin, and one that mediates firm adhesion, ICAM-1. Interactions of these double-conjugated fluorescent microspheres (MSs) in retinal or choroidal microvasculature were visualized in live animals by scanning laser ophthalmoscopy. The new imaging agents showed significantly higher sensitivity for detection of endothelial injury than singly conjugated MSs (rPSGL-1- or α-ICAM-1-conjugated), both in terms of rolling (P<0.01) and firm adhesion (P<0.01). The rolling flux of α-ICAM-1-conjugated MSs did not differ in EIU animals, whereas double-conjugated MSs showed significantly higher rolling flux (P<0.01), revealing that ICAM-1 in vivo supports rolling, once MS interaction with the endothelium is initiated. Double-conjugated MSs specifically detected firmly adhering leukocytes (P<0.01), allowing in vivo quantification of immune response. Antiinflammatory treatment with dexamethasone led to reduced leukocyte accumulation (P<0.01) as well as MS interaction (P<0.01), which suggests that treatment success and resolution of inflammation is quantitatively reflected with this molecular imaging approach. This work introduces novel imaging agents for noninvasive detection of endothelial injury in vivo. Our approach may be developed further to diagnose human disease at a much earlier stage than currently possible.—Sun, D., Nakao, S., Xie, F., Zandi, S., Schering, A., Hafezi-Moghadam, A. Superior sensitivity of novel molecular imaging probe: simultaneously targeting two types of endothelial injury markers. PMID:20103715

  16. Transoral carotid ultrasonography using a micro convex probe with B-flow imaging for extracranial internal carotid artery dissection.

    PubMed

    Sakima, Hirokuni; Isa, Katsunori; Anegawa, Takahiro; Kokuba, Kazuhito; Nakachi, Koh; Goya, Yoshino; Tokashiki, Takashi; Ishiuchi, Shogo; Ohya, Yusuke

    2012-11-01

    We report on transoral carotid ultrasonography using a micro convex probe with B-flow imaging for determining spontaneous extracranial internal carotid artery dissection just below the petrous portion. A 49-year-old man suffered cortical and subcortical infarction in the region of the right middle cerebral artery. Magnetic resonance angiography on the third day of admission revealed spontaneous recanalization of the right internal carotid artery associated with an intimal flap-like structure at the petrous portion. Transoral carotid ultrasonography using a micro convex probe revealed right extracranial internal carotid artery dissection, showing an increased diameter of the right extracranial internal carotid artery with double lumen formation, stenosis of the true lumen, and a mobile intimal flap in B-flow imaging. Transoral carotid ultrasonography using a micro convex probe was helpful to attempt a self-expanding stent for recanalizing right extracranial internal carotid artery dissection. The patient recovered and was discharged ambulatory. The size of the micro convex probe was optimum for transoral carotid ultrasonography in our patient. Micro convex probe is more commonly used than the standard transoral carotid ultrasonography probe, which lacks versatility. We consider that transoral carotid ultrasonography using a micro convex probe could be routinely used for ultrasonographic evaluation of extracranial internal carotid artery dissection.

  17. An optical biopsy system with miniaturized Raman and spectral imaging probes; in vivo animal and ex vivo clinical application studies

    NASA Astrophysics Data System (ADS)

    Sato, Hidetoshi; Suzuki, Toshiaki; Andriana, Bibin B.; Morita, Shin'ichi; Maruyama, Atsushi; Shinzawa, Hideyuki; Komachi, Yuichi; Kanai, Gen'ichi; Ura, Nobuo; Masutani, Koji; Matsuura, Yuji; Toi, Masakazu; Shimosegawa, Toru; Ozaki, Yukihiro

    2009-02-01

    An optical biopsy system which equips miniaturized Raman probes, a miniaturized endoscope and a fluorescent image probe has been developed for in vivo studies of live experimental animals. The present report describes basic optical properties of the system and its application studies for in vivo cancer model animals and ex vivo human cancer tissues. It was developed two types of miniaturized Raman probes, micro Raman probe (MRP) made of optical fibers and ball lens hollow optical fiber Raman probe (BHRP) made of single hollow optical fiber (HOF) with a ball lens. The former has rather large working distance (WD), up to one millimeter. The latter has small WD (~300μm) which depends on the focal length of the ball lens. Use of multiple probes with different WD allows one to obtain detailed information of subsurface tissues in the totally noninvasive manner. The probe is enough narrow to be inserted into a biopsy needle (~19G), for observations of the lesion at deeper inside bodies. The miniaturized endoscope has been applied to observe progression of a stomach cancer in the same rat lesion. It was succeeded to visualize structure of non-stained cancer tissue in live model animals by the fluorescent image technique. The system was also applied to ex vivo studies of human breast and stomach cancers.

  18. Piezoelectric tuning fork probe for atomic force microscopy imaging and specific recognition force spectroscopy of an enzyme and its ligand.

    PubMed

    Makky, Ali; Viel, Pascal; Chen, Shu-wen Wendy; Berthelot, Thomas; Pellequer, Jean-Luc; Polesel-Maris, Jérôme

    2013-11-01

    Piezoelectric quartz tuning fork has drawn the attention of many researchers for the development of new atomic force microscopy (AFM) self-sensing probes. However, only few works have been done for soft biological materials imaging in air or aqueous conditions. The aim of this work was to demonstrate the efficiency of the AFM tuning fork probe to perform high-resolution imaging of proteins and to study the specific interaction between a ligand and its receptor in aqueous media. Thus, a new kind of self-sensing AFM sensor was introduced to realize imaging and biochemical specific recognition spectroscopy of glucose oxidase enzyme using a new chemical functionalization procedure of the metallic tips based on the electrochemical reduction of diazonium salt. This scanning probe as well as the functionalization strategy proved to be efficient respectively for the topography and force spectroscopy of soft biological materials in buffer conditions.

  19. Multi-Wavelength Observations On The Gamma-Ray Blazar PG1553+113 As A Probe For Geometrical Periodical Modulation

    NASA Astrophysics Data System (ADS)

    Stamerra, Antonio; Prandini, E.; Paiano, S.; Da Vela, P.; Gareth, H.; Covino, S.; Cutini, S.; Sandrinelli, A.; Sobacchi, E.; Sormani, M. C.

    2016-10-01

    New claims of periodic variability from gamma-ray blazars have been reported, possibly pointing at milli-pc SMBH binary systems. A modulation of 2 year on 3.5 cycles was recently discovered with Fermi/LAT on the blazar PG1553+113 - for the first time in gamma-rays with high significance - and confirmed by optical lightcurves. Other possible gamma-ray periodic variations have been claimed on PKS 2155-304 and PKS 0537 by Sandrinelli et al. (2015, 2016). The interpretation of such periodicity, when confirmed with continuous observations in following years, is not straightforward. Emission from blazars is dominated by non-thermal emission from the jet; different processes in the jet or at its base, may lead to quasi-periodic emission. We used multi-wavelength (MWL) observations on PG1553+113 to investigate if the observed modulation can be explained with geometrical variations in the jet, possibly pointing to jet precession or to an helical pattern. The ongoing MWL monitoring campaign from radio to very-high energy gamma-ray bands, led by the MAGIC collaboration, will follow the maximum expected at the beginning of 2017, and will allow to set tighter constrains on underlying periodic processes.

  20. A mouse-human phase 1 co-clinical trial of a protease-activated fluorescent probe for imaging cancer

    PubMed Central

    Whitley, Melodi Javid; Cardona, Diana M.; Lazarides, Alexander L.; Spasojevic, Ivan; Ferrer, Jorge M.; Cahill, Joan; Lee, Chang-Lung; Snuderl, Matija; Blazer, Dan G.; Hwang, E. Shelley; Greenup, Rachel A.; Mosca, Paul J.; Mito, Jeffrey K.; Cuneo, Kyle C.; Larrier, Nicole A.; O’Reilly, Erin K.; Riedel, Richard F.; Eward, William C.; Strasfeld, David B.; Fukumura, Dai; Jain, Rakesh K.; Lee, W. David; Griffith, Linda G.; Bawendi, Moungi G.; Kirsch, David G.; Brigman, Brian E.

    2016-01-01

    Local recurrence is a common cause of treatment failure for patients with solid tumors. Intraoperative detection of microscopic residual cancer in the tumor bed could be used to decrease the risk of a positive surgical margin, reduce rates of reexcision, and tailor adjuvant therapy. We used a protease-activated fluorescent imaging probe, LUM015, to detect cancer in vivo in a mouse model of soft tissue sarcoma (STS) and ex vivo in a first-in-human phase 1 clinical trial. In mice, intravenous injection of LUM015 labeled tumor cells, and residual fluorescence within the tumor bed predicted local recurrence. In 15 patients with STS or breast cancer, intravenous injection of LUM015 before surgery was well tolerated. Imaging of resected human tissues showed that fluorescence from tumor was significantly higher than fluorescence from normal tissues. LUM015 biodistribution, pharmacokinetic profiles, and metabolism were similar in mouse and human subjects. Tissue concentrations of LUM015 and its metabolites, including fluorescently labeled lysine, demonstrated that LUM015 is selectively distributed to tumors where it is activated by proteases. Experiments in mice with a constitutively active PEGylated fluorescent imaging probe support a model where tumor-selective probe distribution is a determinant of increased fluorescence in cancer. These co-clinical studies suggest that the tumor specificity of protease-activated imaging probes, such as LUM015, is dependent on both biodistribution and enzyme activity. Our first-in-human data support future clinical trials of LUM015 and other protease-sensitive probes. PMID:26738797

  1. A mouse-human phase 1 co-clinical trial of a protease-activated fluorescent probe for imaging cancer.

    PubMed

    Whitley, Melodi Javid; Cardona, Diana M; Lazarides, Alexander L; Spasojevic, Ivan; Ferrer, Jorge M; Cahill, Joan; Lee, Chang-Lung; Snuderl, Matija; Blazer, Dan G; Hwang, E Shelley; Greenup, Rachel A; Mosca, Paul J; Mito, Jeffrey K; Cuneo, Kyle C; Larrier, Nicole A; O'Reilly, Erin K; Riedel, Richard F; Eward, William C; Strasfeld, David B; Fukumura, Dai; Jain, Rakesh K; Lee, W David; Griffith, Linda G; Bawendi, Moungi G; Kirsch, David G; Brigman, Brian E

    2016-01-06

    Local recurrence is a common cause of treatment failure for patients with solid tumors. Intraoperative detection of microscopic residual cancer in the tumor bed could be used to decrease the risk of a positive surgical margin, reduce rates of reexcision, and tailor adjuvant therapy. We used a protease-activated fluorescent imaging probe, LUM015, to detect cancer in vivo in a mouse model of soft tissue sarcoma (STS) and ex vivo in a first-in-human phase 1 clinical trial. In mice, intravenous injection of LUM015 labeled tumor cells, and residual fluorescence within the tumor bed predicted local recurrence. In 15 patients with STS or breast cancer, intravenous injection of LUM015 before surgery was well tolerated. Imaging of resected human tissues showed that fluorescence from tumor was significantly higher than fluorescence from normal tissues. LUM015 biodistribution, pharmacokinetic profiles, and metabolism were similar in mouse and human subjects. Tissue concentrations of LUM015 and its metabolites, including fluorescently labeled lysine, demonstrated that LUM015 is selectively distributed to tumors where it is activated by proteases. Experiments in mice with a constitutively active PEGylated fluorescent imaging probe support a model where tumor-selective probe distribution is a determinant of increased fluorescence in cancer. These co-clinical studies suggest that the tumor specificity of protease-activated imaging probes, such as LUM015, is dependent on both biodistribution and enzyme activity. Our first-in-human data support future clinical trials of LUM015 and other protease-sensitive probes.

  2. High Precision Imaging of Microscopic Spread of Glioblastoma with a Targeted Ultrasensitive SERRS Molecular Imaging Probe

    PubMed Central

    Huang, Ruimin; Harmsen, Stefan; Samii, Jason M.; Karabeber, Hazem; Pitter, Kenneth L.; Holland, Eric C.; Kircher, Moritz F.

    2016-01-01

    The dismal prognosis of patients with malignant brain tumors such as glioblastoma multiforme (GBM) is attributed mostly to their diffuse growth pattern and early microscopic tumor spread to distant regions of the brain. Because the microscopic tumor foci cannot be visualized with current imaging modalities, it remains impossible to direct treatments optimally. Here we explored the ability of integrin-targeted surface-enhanced resonance Raman spectroscopy (SERRS) nanoparticles to depict the true tumor extent in a GBM mouse model that closely mimics the pathology in humans. The recently developed SERRS-nanoparticles have a sensitivity of detection in the femtomolar range. An RGD-peptide-conjugated version for integrin-targeting (RGD-SERRS) was compared directly to its non-targeted RAD-SERRS control in the same mice via Raman multiplexing. Pre-blocking with RGD peptide before injection of RGD-SERRS nanoparticles was used to verify the specificity of integrin-targeting. In contrast to the current belief that the enhanced permeability and retention (EPR) effect results in a baseline uptake of nanoparticles regardless of their surface chemistry, integrin-targeting was shown to be highly specific, with markedly lower accumulation after pre-blocking. While the non-targeted SERRS particles enabled delineation of the main tumor, the RGD-SERRS nanoparticles afforded a major improvement in visualization of the true extent and the diffuse margins of the main tumor. This included the detection of unexpected tumor areas distant to the main tumor, tracks of migrating cells of 2-3 cells in diameter, and even isolated distant tumor cell clusters of less than 5 cells. This Raman spectroscopy-based nanoparticle-imaging technology holds promise to allow high precision visualization of the true extent of malignant brain tumors. PMID:27279902

  3. A rapid and automated relocation method of an AFM probe for high-resolution imaging.

    PubMed

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-30

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation-relative angular rotation and positional offset between the AFM probe and nano target-it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area.

  4. Photoacoustic Imaging: Semiconducting Oligomer Nanoparticles as an Activatable Photoacoustic Probe with Amplified Brightness for In Vivo Imaging of pH (Adv. Mater. 19/2016).

    PubMed

    Miao, Qingqing; Lyu, Yan; Ding, Dan; Pu, Kanyi

    2016-05-01

    Despite the great potential of photoacoustic imaging in the life sciences, the development of smart activatable photoacoustic probes remains elusive. On page 3662, K. Pu and co-workers report a facile nanoengineering approach based on semiconducting oligomer nano-particles to develop ratiometric photoacoustic probes with amplified brightness and enhanced sensing capability for accurate photoacoustic mapping of pH in the tumors of living mice.

  5. Thermal ion imagers and Langmuir probes in the Swarm electric field instruments

    NASA Astrophysics Data System (ADS)

    Knudsen, D. J.; Burchill, J. K.; Buchert, S. C.; Eriksson, A. I.; Gill, R.; Wahlund, J.-E.; Åhlen, L.; Smith, M.; Moffat, B.

    2017-02-01

    The European Space Agency's three Swarm satellites were launched on 22 November 2013 into nearly polar, circular orbits, eventually reaching altitudes of 460 km (Swarm A and C) and 510 km (Swarm B). Swarm's multiyear mission is to make precision, multipoint measurements of low-frequency magnetic and electric fields in Earth's ionosphere for the purpose of characterizing magnetic fields generated both inside and external to the Earth, along with the electric fields and other plasma parameters associated with electric current systems in the ionosphere and magnetosphere. Electric fields perpendicular to the magnetic field B→ are determined through ion drift velocity v→i and magnetic field measurements via the relation E→⊥=-v→i×B→. Ion drift is derived from two-dimensional images of low-energy ion distribution functions provided by two Thermal Ion Imager (TII) sensors viewing in the horizontal and vertical planes; v→i is corrected for spacecraft potential as determined by two Langmuir probes (LPs) which also measure plasma density ne and electron temperature Te. The TII sensors use a microchannel-plate-intensified phosphor screen imaged by a charge-coupled device to generate high-resolution distribution images (66 × 40 pixels) at a rate of 16 s-1. Images are partially processed on board and further on the ground to generate calibrated data products at a rate of 2 s-1; these include v→i, E→⊥, and ion temperature Ti in addition to electron temperature Te and plasma density ne from the LPs.

  6. Multimodal imaging probes based on Gd-DOTA conjugated quantum dot nanomicelles.

    PubMed

    Liu, Liwei; Law, Wing-Cheung; Yong, Ken-Tye; Roy, Indrajit; Ding, Hong; Erogbogbo, Folarin; Zhang, Xihe; Prasad, Paras N

    2011-05-07

    Recently, multimodal nanoparticles integrating dual- or tri-imaging modalities into a single hybrid nanosystem have attracted plenty of attention in biomedical research. Here, we report the fabrication of two types of multimodal micelle-encapsulated nanoparticles, which were systematically characterized and thoroughly evaluated in terms of their imaging potential and biocompatibility. Optical and magnetic resonance (MR) imaging probes were integrated by conjugating DOTA-gadolinium (Gd) derivative to quantum dot based nanomicelles. Two amphiphilic block copolymer micelles, amine-terminated mPEG-phospholipid and amine-modified Pluronic F127, were chosen as the capping agents because of their excellent biocompatibility and ability to prevent opsonization and prolong circulation time in vivo. Owing to their different hydrophobic-hydrophilic structure, the micellar aggregates exhibited different sizes and protection of core QDs. This work revealed the differences between these nanomicelles in terms of the stability over a wide range of pH, along with their cytotoxicity and the capacity for chelating gadolinium, thus providing a useful guideline for tailor-making multimodal nanoparticles for specific biomedical applications.

  7. Biomarkers and Molecular Probes for Cell Death Imaging and Targeted Therapeutics

    PubMed Central

    Smith, Bryan A.; Smith, Bradley D.

    2012-01-01

    Cell death is a critically important biological process. Disruption of homeostasis, either by excessive or deficient cell death, is a hallmark of many pathological conditions. Recent research advances have greatly increased our molecular understanding of cell death and its role in a range of diseases and therapeutic treatments. Central to these ongoing research and clinical efforts is the need for imaging technologies that can locate and identify cell death in a wide array of in vitro and in vivo biomedical samples with varied spatiotemporal requirements. This review article summarizes community efforts over the past five years to identify useful biomarkers for dead and dying cells, and to develop molecular probes that target these biomarkers for optical, radionuclear, or magnetic resonance imaging. Apoptosis biomarkers are classified as either intracellular (caspase enzymes, mitochondrial membrane potential, cytosolic proteins) or extracellular (plasma membrane phospholipids, membrane potential, surface exposed histones). Necrosis, autophagy, and senescence biomarkers are described, as well as unexplored cell death biomarkers. The article discusses possible chemotherapeutic and theranostic strategies, and concludes with a summary of current challenges and expected eventual rewards of clinical cell death imaging. PMID:22989049

  8. Near-field terahertz probes with room-temperature nanodetectors for subwavelength resolution imaging

    PubMed Central

    Mitrofanov, Oleg; Viti, Leonardo; Dardanis, Enrico; Giordano, Maria Caterina; Ercolani, Daniele; Politano, Antonio; Sorba, Lucia; Vitiello, Miriam S.

    2017-01-01

    Near-field imaging with terahertz (THz) waves is emerging as a powerful technique for fundamental research in photonics and across physical and life sciences. Spatial resolution beyond the diffraction limit can be achieved by collecting THz waves from an object through a small aperture placed in the near-field. However, light transmission through a sub-wavelength size aperture is fundamentally limited by the wave nature of light. Here, we conceive a novel architecture that exploits inherently strong evanescent THz field arising within the aperture to mitigate the problem of vanishing transmission. The sub-wavelength aperture is originally coupled to asymmetric electrodes, which activate the thermo-electric THz detection mechanism in a transistor channel made of flakes of black-phosphorus or InAs nanowires. The proposed novel THz near-field probes enable room-temperature sub-wavelength resolution coherent imaging with a 3.4 THz quantum cascade laser, paving the way to compact and versatile THz imaging systems and promising to bridge the gap in spatial resolution from the nanoscale to the diffraction limit. PMID:28287123

  9. Cathepsin Activity-Based Probes and Inhibitor for Preclinical Atherosclerosis Imaging and Macrophage Depletion

    PubMed Central

    Abd-Elrahman, Ihab; Kosuge, Hisanori; Wises Sadan, Tommy; Ben-Nun, Yael; Meir, Karen; Rubinstein, Chen; Bogyo, Matthew; McConnell, Michael V.

    2016-01-01

    Background and Purpose Cardiovascular disease is the leading cause of death worldwide, mainly due to an increasing prevalence of atherosclerosis characterized by inflammatory plaques. Plaques with high levels of macrophage infiltration are considered “vulnerable” while those that do not have significant inflammation are considered stable; cathepsin protease activity is highly elevated in macrophages of vulnerable plaques and contributes to plaque instability. Establishing novel tools for non-invasive molecular imaging of macrophages in plaques could aid in preclinical studies and evaluation of therapeutics. Furthermore, compounds that reduce the macrophage content within plaques should ultimately impact care for this disease. Methods We have applied quenched fluorescent cathepsin activity-based probes (ABPs) to a murine atherosclerosis model and evaluated their use for in vivo imaging using fluorescent molecular tomography (FMT), as well as ex vivo fluorescence imaging and fluorescent microscopy. Additionally, freshly dissected human carotid plaques were treated with our potent cathepsin inhibitor and macrophage apoptosis was evaluated by fluorescent microscopy. Results We demonstrate that our ABPs accurately detect murine atherosclerotic plaques non-invasively, identifying cathepsin activity within plaque macrophages. In addition, our cathepsin inhibitor selectively induced cell apoptosis of 55%±10% of the macrophage within excised human atherosclerotic plaques. Conclusions Cathepsin ABPs present a rapid diagnostic tool for macrophage detection in atherosclerotic plaque. Our inhibitor confirms cathepsin-targeting as a promising approach to treat atherosclerotic plaque inflammation. PMID:27532109

  10. Near-field terahertz probes with room-temperature nanodetectors for subwavelength resolution imaging

    NASA Astrophysics Data System (ADS)

    Mitrofanov, Oleg; Viti, Leonardo; Dardanis, Enrico; Giordano, Maria Caterina; Ercolani, Daniele; Politano, Antonio; Sorba, Lucia; Vitiello, Miriam S.

    2017-03-01

    Near-field imaging with terahertz (THz) waves is emerging as a powerful technique for fundamental research in photonics and across physical and life sciences. Spatial resolution beyond the diffraction limit can be achieved by collecting THz waves from an object through a small aperture placed in the near-field. However, light transmission through a sub-wavelength size aperture is fundamentally limited by the wave nature of light. Here, we conceive a novel architecture that exploits inherently strong evanescent THz field arising within the aperture to mitigate the problem of vanishing transmission. The sub-wavelength aperture is originally coupled to asymmetric electrodes, which activate the thermo-electric THz detection mechanism in a transistor channel made of flakes of black-phosphorus or InAs nanowires. The proposed novel THz near-field probes enable room-temperature sub-wavelength resolution coherent imaging with a 3.4 THz quantum cascade laser, paving the way to compact and versatile THz imaging systems and promising to bridge the gap in spatial resolution from the nanoscale to the diffraction limit.

  11. Probing the resonant states of Cl2 using velocity slice imaging

    NASA Astrophysics Data System (ADS)

    Gope, Krishnendu; Prabhudesai, Vaibhav S.; Mason, Nigel J.; Krishnakumar, E.

    2016-01-01

    The negative ion resonances in molecular chlorine are probed using velocity slice imaging of the Cl- fragment produced in dissociative electron attachment (DEA). The capability of the velocity slice imaging to cover the entire 360° allows us to obtain clear evidence for the presence of the {}{{2}}{{Σ }}{{u}}+ resonance in the 2.5 eV DEA peak along with the presence of {}{{2}}{{\\Pi }}{{g}}. The {}{{2}}{{Σ }}{{u}}+ resonance is expected to be the contributor only to the 0 eV DEA peak. Its presence in the 2.5 eV DEA peak calls for a relook at the theoretical calculations which have not identified any {} {} {{Σ }} resonance in the 2.5 eV peak. We also identify the presence of the {}{{2}}{{\\Pi }}{{g}} and {}{{2}}{{Σ }}{{g}}+ resonances in the 5.6 eV peak. The momentum images indicate no signature of a resonant contribution in the dipolar dissociation region up to 80 eV.

  12. Maltodextrin-based imaging probes detect bacteria in vivo with high sensitivity and specificity

    NASA Astrophysics Data System (ADS)

    Ning, Xinghai; Lee, Seungjun; Wang, Zhirui; Kim, Dongin; Stubblefield, Bryan; Gilbert, Eric; Murthy, Niren

    2011-08-01

    The diagnosis of bacterial infections remains a major challenge in medicine. Although numerous contrast agents have been developed to image bacteria, their clinical impact has been minimal because they are unable to detect small numbers of bacteria in vivo, and cannot distinguish infections from other pathologies such as cancer and inflammation. Here, we present a family of contrast agents, termed maltodextrin-based imaging probes (MDPs), which can detect bacteria in vivo with a sensitivity two orders of magnitude higher than previously reported, and can detect bacteria using a bacteria-specific mechanism that is independent of host response and secondary pathologies. MDPs are composed of a fluorescent dye conjugated to maltohexaose, and are rapidly internalized through the bacteria-specific maltodextrin transport pathway, endowing the MDPs with a unique combination of high sensitivity and specificity for bacteria. Here, we show that MDPs selectively accumulate within bacteria at millimolar concentrations, and are a thousand-fold more specific for bacteria than mammalian cells. Furthermore, we demonstrate that MDPs can image as few as 105 colony-forming units in vivo and can discriminate between active bacteria and inflammation induced by either lipopolysaccharides or metabolically inactive bacteria.

  13. Molecular Platform for Design and Synthesis of Targeted Dual-Modality Imaging Probes

    PubMed Central

    2015-01-01

    We report a versatile dendritic structure based platform for construction of targeted dual-modality imaging probes. The platform contains multiple copies of 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) branching out from a 1,4,7-triazacyclononane-N,N′,N″-triacetic acid (NOTA) core. The specific coordination chemistries of the NOTA and DOTA moieties offer specific loading of 68/67Ga3+ and Gd3+, respectively, into a common molecular scaffold. The platform also contains three amino groups which can potentiate targeted dual-modality imaging of PET/MRI or SPECT/MRI (PET: positron emission tomography; SPECT: single photon emission computed tomography; MRI: magnetic resonance imaging) when further functionalized by targeting vectors of interest. To validate this design concept, a bimetallic complex was synthesized with six peripheral Gd-DOTA units and one Ga-NOTA core at the center, whose ion T1 relaxivity per gadolinium atom was measured to be 15.99 mM–1 s–1 at 20 MHz. Further, the bimetallic agent demonstrated its anticipated in vivo stability, tissue distribution, and pharmacokinetic profile when labeled with 67Ga. When conjugated with a model targeting peptide sequence, the trivalent construct was able to visualize tumors in a mouse xenograft model by both PET and MRI via a single dose injection. PMID:25615011

  14. Low Dose High Energy X-ray In-Line Phase Sensitive Imaging Prototype: Investigation of Optimal Geometric Conditions and Design Parameters

    PubMed Central

    Ghani, Muhammad. U.; Yan, Aimin; Wong, Molly. D.; Li, Yuhua; Ren, Liqiang; Wu, Xizeng; Liu, Hong

    2016-01-01

    The objective of this study was to investigate the optimization of a high energy in-line phase sensitive x-ray imaging prototype under different geometric and operating conditions for mammography application. A phase retrieval algorithm based on phase attenuation duality (PAD) was applied to the phase contrast images acquired by the prototype. Imaging performance was investigated at four magnification values of 1.67, 2, 2.5 and 3 using an acrylic edge, an American College of Radiology (ACR) mammography phantom and contrast detail (CD) phantom with tube potentials of 100, 120 and 140 kVp. The ACR and CD images were acquired at the same mean glandular dose (MGD) of 1.29 mGy with a computed radiography (CR) detector of 43.75 µm pixel pitch at a fixed source to image distance (SID) of 170 cm. The x-ray tube focal spot size was kept constant as 7 µm while a 2.5 mm thick aluminum (Al) filter was used for beam hardening. The performance of phase contrast and phase retrieved images were compared with computer simulations based on the relative phase contrast factor (RPF) at high x-ray energies. The imaging results showed that the x-ray tube operated at 100 kVp under the magnification of 2.5 exhibits superior imaging performance which is in accordance to the computer simulations. As compared to the phase contrast images, the phase retrieved images of the ACR and CD phantoms demonstrated improved imaging contrast and target discrimination. We compared the CD phantom images acquired in conventional contact mode with and without the anti-scatter grid using the same prototype at 1.295 mGy and 2.59 mGy using 40 kVp, a 25 µm rhodium (Rh) filter. At the same radiation dose, the phase sensitive images provided improved detection capabilities for both the large and small discs, while compared to the double dose image acquired in conventional mode, the observer study also indicated that the phase sensitive images provided improved detection capabilities for the large discs. This

  15. Low dose high energy x-ray in-line phase sensitive imaging prototype: Investigation of optimal geometric conditions and design parameters.

    PubMed

    Ghani, Muhammad U; Yan, Aimin; Wong, Molly D; Li, Yuhua; Ren, Liqiang; Wu, Xizeng; Liu, Hong

    2015-01-01

    The objective of this study was to investigate the optimization of a high energy in-line phase sensitive x-ray imaging prototype under different geometric and operating conditions for mammography application. A phase retrieval algorithm based on phase attenuation duality (PAD) was applied to the phase contrast images acquired by the prototype. Imaging performance was investigated at four magnification values of 1.67, 2, 2.5 and 3 using an acrylic edge, an American College of Radiology (ACR) mammography phantom and contrast detail (CD) phantom with tube potentials of 100, 120 and 140 kVp. The ACR and CD images were acquired at the same mean glandular dose (MGD) of 1.29 mGy with a computed radiography (CR) detector of 43.75 μm pixel pitch at a fixed source to image distance (SID) of 170 cm. The x-ray tube focal spot size was kept constant as 7 μm while a 2.5 mm thick aluminum (Al) filter was used for beam hardening. The performance of phase contrast and phase retrieved images were compared with computer simulations based on the relative phase contrast factor (RPF) at high x-ray energies. The imaging results showed that the x-ray tube operated at 100 kVp under the magnification of 2.5 exhibits superior imaging performance which is in accordance to the computer simulations. As compared to the phase contrast images, the phase retrieved images of the ACR and CD phantoms demonstrated improved imaging contrast and target discrimination. We compared the CD phantom images acquired in conventional contact mode with and without the anti-scatter grid using the same prototype at 1.295 mGy and 2.59 mGy using 40 kVp, a 25 μm rhodium (Rh) filter. At the same radiation dose, the phase sensitive images provided improved detection capabilities for both the large and small discs, while compared to the double dose image acquired in conventional mode, the observer study also indicated that the phase sensitive images provided improved detection capabilities for the large discs. This

  16. Dual-Color Fluorescence Imaging of Magnetic Nanoparticles in Live Cancer Cells Using Conjugated Polymer Probes

    PubMed Central

    Sun, Minjie; Sun, Bin; Liu, Yun; Shen, Qun-Dong; Jiang, Shaojun

    2016-01-01

    Rapid growth in biological applications of nanomaterials brings about pressing needs for exploring nanomaterial-cell interactions. Cationic blue-emissive and anionic green-emissive conjugated polymers are applied as dual-color fluorescence probes to the surface of negatively charged magnetic nanoparticles through sequentially electrostatic adsorption. These conjugated polymers have large extinction coefficients and high fluorescence quantum yield (82% for PFN and 62% for ThPFS). Thereby, one can visualize trace amount (2.7 μg/mL) of fluorescence-labeled nanoparticles within cancer cells by confocal laser scanning microscopy. Fluorescence labeling by the conjugated polymers is also validated for quantitative determination of the internalized nanoparticles in each individual cell by flow cytometry analysis. Extensive overlap of blue and green fluorescence signals in the cytoplasm indicates that both conjugated polymer probes tightly bind to the surface of the nanoparticles during cellular internalization. The highly charged and fluorescence-labeled nanoparticles non-specifically bind to the cell membranes, followed by cellular uptake through endocytosis. The nanoparticles form aggregates inside endosomes, which yields a punctuated staining pattern. Cellular internalization of the nanoparticles is dependent on the dosage and time. Uptake efficiency can be enhanced three-fold by application of an external magnetic field. The nanoparticles are low cytotoxicity and suitable for simultaneously noninvasive fluorescence and magnetic resonance imaging application. PMID:26931282

  17. Dual-Color Fluorescence Imaging of Magnetic Nanoparticles in Live Cancer Cells Using Conjugated Polymer Probes.

    PubMed

    Sun, Minjie; Sun, Bin; Liu, Yun; Shen, Qun-Dong; Jiang, Shaojun

    2016-03-02

    Rapid growth in biological applications of nanomaterials brings about pressing needs for exploring nanomaterial-cell interactions. Cationic blue-emissive and anionic green-emissive conjugated polymers are applied as dual-color fluorescence probes to the surface of negatively charged magnetic nanoparticles through sequentially electrostatic adsorption. These conjugated polymers have large extinction coefficients and high fluorescence quantum yield (82% for PFN and 62% for ThPFS). Thereby, one can visualize trace amount (2.7 μg/mL) of fluorescence-labeled nanoparticles within cancer cells by confocal laser scanning microscopy. Fluorescence labeling by the conjugated polymers is also validated for quantitative determination of the internalized nanoparticles in each individual cell by flow cytometry analysis. Extensive overlap of blue and green fluorescence signals in the cytoplasm indicates that both conjugated polymer probes tightly bind to the surface of the nanoparticles during cellular internalization. The highly charged and fluorescence-labeled nanoparticles non-specifically bind to the cell membranes, followed by cellular uptake through endocytosis. The nanoparticles form aggregates inside endosomes, which yields a punctuated staining pattern. Cellular internalization of the nanoparticles is dependent on the dosage and time. Uptake efficiency can be enhanced three-fold by application of an external magnetic field. The nanoparticles are low cytotoxicity and suitable for simultaneously noninvasive fluorescence and magnetic resonance imaging application.

  18. Nanomechanical and topographical imaging of living cells by atomic force microscopy with colloidal probes

    SciTech Connect

    Puricelli, Luca; Galluzzi, Massimiliano; Schulte, Carsten; Podestà, Alessandro Milani, Paolo

    2015-03-15

    Atomic Force Microscopy (AFM) has a great potential as a tool to characterize mechanical and morphological properties of living cells; these properties have been shown to correlate with cells’ fate and patho-physiological state in view of the development of novel early-diagnostic strategies. Although several reports have described experimental and technical approaches for the characterization of cellular elasticity by means of AFM, a robust and commonly accepted methodology is still lacking. Here, we show that micrometric spherical probes (also known as colloidal probes) are well suited for performing a combined topographic and mechanical analysis of living cells, with spatial resolution suitable for a complete and accurate mapping of cell morphological and elastic properties, and superior reliability and accuracy in the mechanical measurements with respect to conventional and widely used sharp AFM tips. We address a number of issues concerning the nanomechanical analysis, including the applicability of contact mechanical models and the impact of a constrained contact geometry on the measured Young’s modulus (the finite-thickness effect). We have tested our protocol by imaging living PC12 and MDA-MB-231 cells, in order to demonstrate the importance of the correction of the finite-thickness effect and the change in Young’s modulus induced by the action of a cytoskeleton-targeting drug.

  19. Advanced slow-magic angle spinning probe for magnetic resonance imaging and spectroscopy

    DOEpatents

    Wind, Robert A.; Hu, Jian Zhi; Minard, Kevin R.; Rommereim, Donald N.

    2006-01-24

    The present invention relates to a probe and processes useful for magnetic resonance imaging and spectroscopy instruments. More particularly, the invention relates to a MR probe and processes for obtaining resolution enhancements of fluid objects, including live specimens, using an ultra-slow (magic angle) spinning (MAS) of the specimen combined with a modified phase-corrected magic angle turning (PHORMAT) pulse sequence. Proton NMR spectra were measured of the torso and the top part of the belly of a female BALBc mouse in a 2T field, while spinning the animal at a speed of 1.5 Hz. Results show that even in this relatively low field with PHORMAT, an isotropic spectrum is obtained with line widths that are a factor 4.6 smaller than those obtained in a stationary mouse. Resolution of 1H NMR metabolite spectra are thus significantly enhanced. Results indicate that PHORMAT has the potential to significantly increase the utility of 1H NMR spectroscopy for in vivo biochemical, biomedical and/or medical applications involving large-sized biological objects such as mice, rats and even humans within a hospital setting. For small-sized objects, including biological objects, such as excised tissues, organs, live bacterial cells, and biofilms, use of PASS at a spinning rate of 30 Hz and above is preferred.

  20. Quantum dots-based probes conjugated to Annexin V for photostable apoptosis detection and imaging

    NASA Astrophysics Data System (ADS)

    Le Gac, Séverine; Vermes, Istvan; van den Berg, Albert

    2008-02-01

    Quantum dots (Qdots) are nanoparticles exhibiting fluorescent properties that are widely applied for cell staining. We present here the development of quantum dots for specific targeting of apoptotic cells, for both apoptosis detection and staining of apoptotic "living" cells. These Qdots are functionalized with Annexin V, a 35-kDa protein that specifically interacts with the membrane of apoptotic cells: Annexin V recognizes and binds to phosphatidylserine (PS) moieties which are present on the outer membrane of apoptotic cells and not on this of healthy or necrotic cells. By using Annexin V, our Qdots probes are made specific for apoptotic cells. For that purpose, Qdots Streptavidin Conjugates are coupled to biotinylated Annexin V. Staining of apoptotic cells was checked using fluorescence and confocal microscopy techniques on nonfixed cells. It is shown here that Qdots are insensitive to bleaching after prolonged and frequent exposure as opposed to organic dyes and this makes them excellent candidates for time-lapse imaging purposes. We illustrate the application of our Qdots-based probes to continuously follow fast changes occurring on the membrane of apoptotic cells.

  1. SU-E-I-81: Targeting of HER2-Expressing Tumors with Dual PET-MR Imaging Probes

    SciTech Connect

    Xu, P; Peng, Y; Sun, M; Yang, X

    2015-06-15

    Purpose: The detection of human epidermal growth factor receptor type 2 (HER2) expression in malignant tumors provides important information influencing patient management. Radionuclide in vivo imaging of HER2 may permit the detection of HER2 in both primary tumors and metastases by a single noninvasive procedure. Trastuzumab, effective in about 15 % of women with breast cancer, downregulates signalling through the Akt/PI3K and MAPK pathways.These pathways modulate metabolism which can be monitored by positron emission tomography (PET) and magnetic resonance imaging (MRI). Methods: The relationship between response of HER2 overexpressing tumours and changes in imaging PET or SPECT and MRI will be examined by a integrated bimodal imaging probe.Small (7 kDa) high-affinity anti-HER2 Affibody molecules and KCCYSL targeting peptide may be suitable tracers for visualization of HER2-expressing tumors. Peptide-conjugated iron oxide nanoparticles (Fe3O4 NPs) as MRI imaging and CB-TE2A as PET imaging are integrated into a single synthetic molecule in the HER2 positive cancer. Results: One of targeted contrast bimodal imaging probe agents was synthesized and evaluated to target HER2-expressing tumors in a HER2 positive rat model. We will report the newest results regarding the development of bimodal imaging probes. Conclusion: The preliminary results of the bimodal imaging probe presents high correlation of MRI signal and PET imaging intensity in vivo. This unique feature can hardly be obtained by single model contrast agents. It is envisioned that this bimodal agents can hold great potential for accurate detection of HER2-expressing tumors which are critical for clinical management of the disease.

  2. Reduced Sampling Size with Nanopipette for Tapping-Mode Scanning Probe Electrospray Ionization Mass Spectrometry Imaging

    PubMed Central

    Kohigashi, Tsuyoshi; Otsuka, Yoichi; Shimazu, Ryo; Matsumoto, Takuya; Iwata, Futoshi; Kawasaki, Hideya; Arakawa, Ryuichi

    2016-01-01

    Mass spectrometry imaging (MSI) with ambient sampling and ionization can rapidly and easily capture the distribution of chemical components in a solid sample. Because the spatial resolution of MSI is limited by the size of the sampling area, reducing sampling size is an important goal for high resolution MSI. Here, we report the first use of a nanopipette for sampling and ionization by tapping-mode scanning probe electrospray ionization (t-SPESI). The spot size of the sampling area of a dye molecular film on a glass substrate was decreased to 6 μm on average by using a nanopipette. On the other hand, ionization efficiency increased with decreasing solvent flow rate. Our results indicate the compatibility between a reduced sampling area and the ionization efficiency using a nanopipette. MSI of micropatterns of ink on a glass and a polymer substrate were also demonstrated. PMID:28101441

  3. Synthesis of [{sup 125}I]iodoDPA-713: A new probe for imaging inflammation

    SciTech Connect

    Wang, Haofan; Pullambhatla, Mrudula; Guilarte, Tomas R.; Mease, Ronnie C.; Pomper, Martin G.

    2009-11-06

    [{sup 125}I]IodoDPA-713 [{sup 125}I]1, which targets the translocator protein (TSPO, 18 kDa), was synthesized in seven steps from methyl-4-methoxybenzoate as a tool for quantification of inflammation in preclinical models. Preliminary in vitro autoradiography and in vivo small animal imaging were performed using [{sup 125}I]1 in a neurotoxicant-treated rat and in a murine model of lung inflammation, respectively. The radiochemical yield of [{sup 125}I]1 was 44 {+-} 6% with a specific radioactivity of 51.8 GBq/{mu}mol (1400 mCi/{mu}mol) and >99% radiochemical purity. Preliminary studies showed that [{sup 125}I]1 demonstrated increased specific binding to TSPO in a neurotoxicant-treated rat and increased radiopharmaceutical uptake in the lungs of an experimental inflammation model of lung inflammation. Compound [{sup 125}I]1 is a new, convenient probe for preclinical studies of TSPO activity.

  4. Noncompetitive affinity assays of glucagon and amylin using mirror-image aptamers as affinity probes.

    PubMed

    Yi, Lian; Wang, Xue; Bethge, Lucas; Klussmann, Sven; Roper, Michael G

    2016-03-21

    The ability to detect picomolar concentrations of glucagon and amylin using fluorescently labeled mirror-image aptamers, so-called Spiegelmers, is demonstrated. Spiegelmers rival the specificity of antibodies and overcome the problem of biostability of natural aptamers in a biological matrix. Using Spiegelmers as affinity probes, noncompetitive capillary electrophoresis affinity assays of glucagon and murine amylin were developed and optimized. The detection limit for glucagon was 6 pM and for amylin was 40 pM. Glucagon-like peptide-1 and -2 did not interfere with the glucagon assay, while the amylin assay showed cross-reactivity to calcitonin gene related peptide. The developed assays were combined with a competitive immunoassay for insulin to measure glucagon, amylin, and insulin secretion from batches of islets after incubation with different glucose concentrations. The development of these assays is an important step towards incorporation into an online measurement system for monitoring dynamic secretion from single islets.

  5. Fourier transform infrared imaging and infrared fiber optic probe spectroscopy identify collagen type in connective tissues.

    PubMed

    Hanifi, Arash; McCarthy, Helen; Roberts, Sally; Pleshko, Nancy

    2013-01-01

    Hyaline cartilage and mechanically inferior fibrocartilage consisting of mixed collagen types are frequently found together in repairing articular cartilage. The present study seeks to develop methodology to identify collagen type and other tissue components using Fourier transform infrared (FTIR) spectral evaluation of matrix composition in combination with multivariate analyses. FTIR spectra of the primary molecular components of repair cartilage, types I and II collagen, and aggrecan, were used to develop multivariate spectral models for discrimination of the matrix components of the tissues of interest. Infrared imaging data were collected from bovine bone, tendon, normal cartilage, meniscus and human repair cartilage tissues, and composition predicted using partial least squares analyses. Histology and immunohistochemistry results were used as standards for validation. Infrared fiber optic probe spectral data were also obtained from meniscus (a tissue with mixed collagen types) to evaluate the potential of this method for identification of collagen type in a minimally-invasive clinical application. Concentration profiles of the tissue components obtained from multivariate analysis were in excellent agreement with histology and immunohistochemistry results. Bone and tendon showed a uniform distribution of predominantly type I collagen through the tissue. Normal cartilage showed a distribution of type II collagen and proteoglycan similar to the known composition, while in repair cartilage, the spectral distribution of both types I and II collagen were similar to that observed via immunohistochemistry. Using the probe, the outer and inner regions of the meniscus were shown to be primarily composed of type I and II collagen, respectively, in accordance with immunohistochemistry data. In summary, multivariate analysis of infrared spectra can indeed be used to differentiate collagen type I and type II, even in the presence of proteoglycan, in connective tissues

  6. Impact of geometric mean imaging in the accurate determination of partial function in MAG3 renal scanning in a patient with retroperitoneal mass.

    PubMed

    Takesh, Mustafa; Zechmann, Christian M; Haufe, Sabine; Giesel, Frederik L; Kratochwil, Clemens

    2011-01-01

    Liposarcoma frequently occurs in the retroperitoneum and lower extremities, accounting for 20% of all mesenchymal malignancies. Liposarcomas vary by histology and can be classified into four types. Those four types are well differentiated, myxoid/round cell, pleomorphic and dedifferentiated. Due to retroperitoneal location of this tumor, it is expected to affect the kidney position. Renography has provided a unique tool for noninvasive evaluation of various functional parameters e.g. relative renal function. Most renography studies are carried out using the posterior view, under the assumption that the depths of both kidneys are similar so that the radiotracer counts in the region of interest will be attenuated to the same extent. Errors in estimation of the relative renal function may arise if the kidneys are at different depths e.g. secondary to a pushing tumor. Geometric mean imaging from combined anterior and posterior views helps to overcome this issue. This case shows the impact of geometric mean imaging in the truthful determination of partial function in patients with retroperitoneal liposarcoma.

  7. Efficient Two-Photon Fluorescent Probe for Nitroreductase Detection and Hypoxia Imaging in Tumor Cells and Tissues.

    PubMed

    Zhang, Jing; Liu, Hong-Wen; Hu, Xiao-Xiao; Li, Jin; Liang, Li-Hui; Zhang, Xiao-Bing; Tan, Weihong

    2015-12-01

    Hypoxia plays an important role in tumor progression, and the development of efficient methods for monitoring hypoxic degree in living systems is of great biomedical importance. In the solid tumors, the nitroreductase level is directly corresponded with the hypoxic status. Many one-photon excited fluorescent probes have been developed for hypoxia imaging in tumor cells via the detection of nitroreductase level. However, two-photon excited probes are more suitable for bioimaging. In this work, a two-photon probe 1 for nitroreductase detection and hypoxic status monitoring in living tumor cells and tissues was reported for the first time. The detection is based on the fact that the nitro-group of probe 1 could be selectively reduced to an amino-group by nitroreductase in the presence of reduced NADH, following by a 1,6-rearrangement-elimination to release the fluorophore, resulting in the enhancement of fluorescence. The probe exhibited both one-photon and two-photon excited remarkable fluorescence enhancement (∼70-fold) for nitroreductase, which afforded a high sensitivity for nitroreductase, with a detection limit of 20 ng/mL observed. Moreover, the applications of the probe for fluorescent bioimaging of hypoxia in living cells and two-photon bioimaging in tissues were carried out, with tissue-imaging depths of 70-160 μm observed, which demonstrates its practical application in complex biosystems.

  8. Sapphire ball lensed fiber probe for common-path optical coherence tomography in ocular imaging and sensing.

    PubMed

    Zhao, Mingtao; Huang, Yong; Kang, Jin U

    2013-03-26

    We describe a novel common-path optical coherence tomography (CP-OCT) fiber probe design using a sapphire ball lens for cross-sectional imaging and sensing in retina vitrectomy surgery. Single mode Gaussian beam (TEM(00)) simulation was used to optimize lateral resolution and working distance (WD) of the common-path probe. A theoretical sensitivity model for CP-OCT was prosed to assess its optimal performance based an unbalanced photodetector configuration. Two probe designs with working distances (WD) 415μm and 1221μm and lateral resolution 11μm and 18μm, respectively were implemented with sensitivity up to 88dB. The designs are also fully compatible with conventional Michelson interferometer based OCT configurations. The reference plane of the probe, located at the distal beam exit interface of the single mode fiber (SMF), was encased within a 25-gauge hypodermic needle by the sapphire ball lens facilitates its applications in bloody and harsh environments. The performances of the fiber probe with 11μm of lateral resolution and 19μm of axial resolution were demonstrated by cross-sectional imaging of a cow cornea and retina in vitro with a 1310nm swept source OCT system. This probe was also attached to a piezoelectric motor for active compensation of physiological tremor for handheld retinal surgical tools.

  9. Sapphire ball lensed fiber probe for common-path optical coherence tomography in ocular imaging and sensing

    NASA Astrophysics Data System (ADS)

    Zhao, Mingtao; Huang, Yong; Kang, Jin U.

    2013-03-01

    We describe a novel common-path optical coherence tomography (CP-OCT) fiber probe design using a sapphire ball lens for cross-sectional imaging and sensing in retina vitrectomy surgery. Single mode Gaussian beam (TEM00) simulation was used to optimize lateral resolution and working distance (WD) of the common-path probe. A theoretical sensitivity model for CP-OCT was prosed to assess its optimal performance based an unbalanced photodetector configuration. Two probe designs with working distances (WD) 415μm and 1221μm and lateral resolution 11μm and 18μm, respectively were implemented with sensitivity up to 88dB. The designs are also fully compatible with conventional Michelson interferometer based OCT configurations. The reference plane of the probe, located at the distal beam exit interface of the single mode fiber (SMF), was encased within a 25-gauge hypodermic needle by the sapphire ball lens facilitates its applications in bloody and harsh environments. The performances of the fiber probe with 11μm of lateral resolution and 19μm of axial resolution were demonstrated by cross-sectional imaging of a cow cornea and retina in vitro with a 1310nm swept source OCT system. This probe was also attached to a piezoelectric motor for active compensation of physiological tremor for handheld retinal surgical tools.

  10. Direct Imaging of the Onset of Electrical Conduction in Silver Nanowire Networks by Infrared Thermography: Evidence of Geometrical Quantized Percolation.

    PubMed

    Sannicolo, Thomas; Muñoz-Rojas, David; Nguyen, Ngoc Duy; Moreau, Stéphane; Celle, Caroline; Simonato, Jean-Pierre; Bréchet, Yves; Bellet, Daniel

    2016-11-09

    Advancement in the science and technology of random metallic nanowire (MNW) networks is crucial for their appropriate integration in many applications including transparent electrodes for optoelectronics and transparent film heaters. We have recently highlighted the discontinuous activation of efficient percolating pathways (EPPs) for networks having densities slightly above the percolation threshold. Such networks exhibit abrupt drops of electrical resistance when thermal or electrical annealing is performed, which gives rise to a "geometrically quantized percolation". In this Letter, lock-in thermography (LiT) is used to provide visual evidence of geometrical quantized percolation: when low voltage is applied to the network, individual "illuminated pathways" can be detected, and new branches get highlighted as the voltage is incrementally increased. This experimental approach has allowed us to validate our original model and map the electrical and thermal distributions in silver nanowire (AgNW) networks. We also study the effects of electrode morphology and wire dimensions on quantized percolation. Furthermore, we demonstrate that the network failure at high temperature can also be governed by a quantized increase of the electrical resistance, which corresponds to the discontinuous destruction of individual pathways (antipercolation). More generally, we demonstrate that LiT is a promising tool for the detection of conductive subclusters as well as hot spots in AgNW networks.

  11. In vivo intra-operative breast tumor margin detection using a portable OCT system with a handheld surgical imaging probe

    NASA Astrophysics Data System (ADS)

    Erickson-Bhatt, Sarah J.; Nolan, Ryan; Shemonski, Nathan D.; Adie, Steven G.; Putney, Jeffrey; Darga, Donald; McCormick, Daniel T.; Cittadine, Andrew; Marjanovic, Marina;