Sample records for important downstream consequences
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Sediment conditions in the San Antonio River Basin downstream from San Antonio, Texas, 2000-13
Ockerman, Darwin J.; Banta, J. Ryan; Crow, Cassi L.; Opsahl, Stephen P.
2015-01-01
Sediment plays an important role in the ecological health of rivers and estuaries and consequently is an important issue for water-resource managers. To better understand sediment characteristics in the San Antonio River Basin, the U.S. Geological Survey, in cooperation with the San Antonio River Authority, completed a two-part study in the San Antonio River Basin downstream from San Antonio, Texas, to (1) collect and analyze sediment data to characterize sediment conditions and (2) develop and calibrate a watershed model to simulate hydrologic conditions and suspended-sediment loads during 2000–12.
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Parsons, Michael T.; Whiley, Phillip J.; Beesley, Jonathan; Drost, Mark; de Wind, Niels; Thompson, Bryony A.; Marquart, Louise; Hopper, John L.; Jenkins, Mark A.; Brown, Melissa A.; Tucker, Kathy; Warwick, Linda; Buchanan, Daniel D.; Spurdle, Amanda B.
2014-01-01
Variants that disrupt the translation initiation sequences in cancer predisposition genes are generally assumed to be deleterious. However few studies have validated these assumptions with functional and clinical data. Two cancer syndrome gene variants likely to affect native translation initiation were identified by clinical genetic testing: MLH1:c.1A>G p.(Met1?) and BRCA2:c.67+3A>G. In vitro GFP-reporter assays were conducted to assess the consequences of translation initiation disruption on alternative downstream initiation codon usage. Analysis of MLH1:c.1A>G p.(Met1?) showed that translation was mostly initiated at an in-frame position 103 nucleotides downstream, but also at two ATG sequences downstream. The protein product encoded by the in-frame transcript initiating from position c.103 showed loss of in vitro mismatch repair activity comparable to known pathogenic mutations. BRCA2:c.67+3A>G was shown by mRNA analysis to result in an aberrantly spliced transcript deleting exon 2 and the consensus ATG site. In the absence of exon 2, translation initiated mostly at an out-of-frame ATG 323 nucleotides downstream, and to a lesser extent at an in-frame ATG 370 nucleotides downstream. Initiation from any of the downstream alternative sites tested in both genes would lead to loss of protein function, but further clinical data is required to confirm if these variants are associated with a high cancer risk. Importantly, our results highlight the need for caution in interpreting the functional and clinical consequences of variation that leads to disruption of the initiation codon, since translation may not necessarily occur from the first downstream alternative start site, or from a single alternative start site. PMID:24302565
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Snover, Melissa; Adams, Michael J.; Ashton, Donald T.; Bettaso, Jamie B.; Welsh, Hartwell H.
2015-01-01
Given the importance of size and age at reproductive maturity to population dynamics, this information on counter-gradient growth will improve our ability to understand and predict the consequences of dam operations for downstream turtle populations.
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Juracek, Kyle E.
2015-01-01
Reservoirs are important for various purposes including flood control, water supply, power generation, and recreation. The aging of America's reservoirs and progressive loss of water storage capacity resulting from ongoing sedimentation, coupled with increasing societal needs, will cause the social, economic, environmental, and political importance of reservoirs to continually increase. The short- and medium-term (<50 years) environmental consequences of reservoir construction and operation are well known and include an altered flow regime, lost connectivity (longitudinal, floodplain), an altered sediment regime, substrate compositional change, and downstream channel degradation. In general, reservoir-related changes have had adverse consequences for the natural ecosystem. Longer term (>50 years) environmental changes as reservoirs enter “old” age are less understood. Additional research is needed to help guide the future management of aging reservoir systems and support the difficult decisions that will have to be made. Important research directions include assessment of climate change effects on aging and determination of ecosystem response to ongoing aging and various management actions that may be taken with the intent of minimizing or reversing the physical effects of aging.
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Keebaugh, Alaine C.; Thomas, James W.
2010-01-01
Gene loss has been proposed to play a major role in adaptive evolution, and recent studies are beginning to reveal its importance in human evolution. However, the potential consequence of a single gene-loss event upon the fates of functionally interrelated genes is poorly understood. Here, we use the purine metabolic pathway as a model system in which to explore this important question. The loss of urate oxidase (UOX) activity, a necessary step in this pathway, has occurred independently in the hominoid and bird/reptile lineages. Because the loss of UOX would have removed the functional constraint upon downstream genes in this pathway, these downstream genes are generally assumed to have subsequently deteriorated. In this study, we used a comparative genomics approach to empirically determine the fate of UOX itself and the downstream genes in five hominoids, two birds, and a reptile. Although we found that the loss of UOX likely triggered the genetic deterioration of the immediate downstream genes in the hominoids, surprisingly in the birds and reptiles, the UOX locus itself and some of the downstream genes were present in the genome and predicted to encode proteins. To account for the variable pattern of gene retention and loss after the inactivation of UOX, we hypothesize that although gene loss is a common fate for genes that have been rendered obsolete due to the upstream loss of an enzyme a metabolic pathway, it is also possible that same lack of constraint will foster the evolution of new functions or allow the optimization of preexisting alternative functions in the downstream genes, thereby resulting in gene retention. Thus, adaptive single-gene losses have the potential to influence the long-term evolutionary fate of functionally interrelated genes. PMID:20106906
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Keebaugh, Alaine C; Thomas, James W
2010-06-01
Gene loss has been proposed to play a major role in adaptive evolution, and recent studies are beginning to reveal its importance in human evolution. However, the potential consequence of a single gene-loss event upon the fates of functionally interrelated genes is poorly understood. Here, we use the purine metabolic pathway as a model system in which to explore this important question. The loss of urate oxidase (UOX) activity, a necessary step in this pathway, has occurred independently in the hominoid and bird/reptile lineages. Because the loss of UOX would have removed the functional constraint upon downstream genes in this pathway, these downstream genes are generally assumed to have subsequently deteriorated. In this study, we used a comparative genomics approach to empirically determine the fate of UOX itself and the downstream genes in five hominoids, two birds, and a reptile. Although we found that the loss of UOX likely triggered the genetic deterioration of the immediate downstream genes in the hominoids, surprisingly in the birds and reptiles, the UOX locus itself and some of the downstream genes were present in the genome and predicted to encode proteins. To account for the variable pattern of gene retention and loss after the inactivation of UOX, we hypothesize that although gene loss is a common fate for genes that have been rendered obsolete due to the upstream loss of an enzyme a metabolic pathway, it is also possible that same lack of constraint will foster the evolution of new functions or allow the optimization of preexisting alternative functions in the downstream genes, thereby resulting in gene retention. Thus, adaptive single-gene losses have the potential to influence the long-term evolutionary fate of functionally interrelated genes.
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Msx genes are important apoptosis effectors downstream of the Shh/Gli3 pathway in the limb.
Lallemand, Yvan; Bensoussan, Vardina; Cloment, Cécile Saint; Robert, Benoît
2009-07-15
In tetrapods, the anteroposterior (AP) patterning of the limb is under the control of the antagonistic activities of the secreted factor Sonic hedgehog (Shh) and Gli3R, the truncated repressor form of the transcription factor Gli3. In this report, we show that Msx1 and Msx2 are targets and downstream effectors of Gli3R. Consequently, in Shh null mutants, Msx genes are overexpressed and, furthermore, partially responsible for the limb phenotype. This is exemplified by the fact that reducing Msx activity in Shh mutants partially restores a normal limb development. Finally, we show that the main action of the Msx genes, in both normal and Shh(-/-) limb development, is to control cell death in the mesenchyme. We propose that, in the limb, Msx genes act downstream of the Shh/Gli3 pathway by transducing BMP signaling and that, in the absence of Shh signaling, their deregulation contributes to the extensive apoptosis that impairs limb development.
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Yang, Kai; Jackson, Michael F.; MacDonald, John F.
2014-01-01
G Protein Coupled Receptors (GPCRs) are the largest family of receptors whose ligands constitute nearly a third of prescription drugs in the market. They are widely involved in diverse physiological functions including learning and memory. NMDA receptors (NMDARs), which belong to the ionotropic glutamate receptor family, are likewise ubiquitously expressed in the central nervous system (CNS) and play a pivotal role in learning and memory. Despite its critical contribution to physiological and pathophysiological processes, few pharmacological interventions aimed directly at regulating NMDAR function have been developed to date. However, it is well established that NMDAR function is precisely regulated by cellular signalling cascades recruited downstream of G protein coupled receptor (GPCR) stimulation. Accordingly, the downstream regulation of NMDARs likely represents an important determinant of outcome following treatment with neuropsychiatric agents that target selected GPCRs. Importantly, the functional consequence of such regulation on NMDAR function varies, based not only on the identity of the GPCR, but also on the cell type in which relevant receptors are expressed. Indeed, the mechanisms responsible for regulating NMDARs by GPCRs involve numerous intracellular signalling molecules and regulatory proteins that vary from one cell type to another. In the present article, we highlight recent findings from studies that have uncovered novel mechanisms by which selected GPCRs regulate NMDAR function and consequently NMDAR-dependent plasticity. PMID:24562329
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NASA Astrophysics Data System (ADS)
Skalak, K. J.; Pizzuto, J. E.; Jenkins, P.
2003-12-01
The potential downstream effects of dam removal were assessed on fifteen sites of varying dam size and characteristics in Pennsylvania and Maryland. The dams ranged in size from a 30 cm high fish weir to a water supply dam 57 m high. Stream order ranged from 1 to 4. The dams are located in watersheds with varying degrees of human disturbance and urbanization. The dams are also operated differently, with significant consequences for hydraulic residence time and downstream flow variability. Most streams were alluvial, but 6 of the reaches were clearly bedrock channels. We hypothesize that the channel upstream, which is unaffected by the dam, will provide an accurate model for the channel downstream of the dam long after dam removal. Therefore, reaches upstream and downstream of the dam were compared to determine the effects of the dam as well as the condition of the stream that will ultimately develop decades after dam removal. Surprisingly, the dams had no consistent influence on channel morphology. However, the percentage of sand is significantly lower downstream than upstream: the mean % sand downstream is 11.47%, while the mean % sand upstream is 21.39%. The coarser fractions of the bed, as represented by the 84th percentile grain diameter, are unaffected by the presence of the dam. These results imply that decades after dam removal, the percentage of sand on the bed will increase, but the coarse fraction of the bed will remain relatively unchanged.
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Stites, Mallory C.; Federmeier, Kara D.
2015-01-01
We used eye-tracking to investigate the downstream processing consequences of encountering noun/verb (NV) homographs (i.e., park) in semantically neutral but syntactically constraining contexts. Target words were followed by a prepositional phrase containing a noun that was plausible for only one meaning of the homograph. Replicating previous work, we found increased first fixation durations on NV homographs compared to unambiguous words, which persisted into the next sentence region. At the downstream noun, we found plausibility effects following ambiguous words that were correlated with the size of a reader's first fixation effect, suggesting that this effect reflects the recruitment of processing resources necessary to suppress the homograph's context-inappropriate meaning. Using these same stimuli, Lee and Federmeier (2012) found a sustained frontal negativity to the NV homographs, and, on the downstream noun, found a plausibility effect that was also positively correlated with the size of a reader's ambiguity effect. Together, these findings suggest that when only syntactic constraints are available, meaning selection recruits inhibitory mechanisms that can be measured in both first fixation slowdown and ERP ambiguity effects. PMID:25961358
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Banta, J. Ryan; Ockerman, Darwin J.; Crow, Cassi; Opsahl, Stephen P.
2015-01-01
This extended abstract is based on the U.S. Geological Survey Scientific Investigations Reports by Crow et al. (2013) and Banta and Ockerman (2014). Suspended sediment in rivers and streams can play an important role in ecological health of rivers and estuaries and consequently is an important issue for water-resource managers. The quantity and type of suspended sediment can affect the biological communities (Wood and Armitage, 1997), the concentration and movement of natural constituents and anthropogenic contaminants (Moran and others, 2012), and the amount of sediment deposition in coastal environments (Milliman and Meade, 1983). To better understand suspended-sediment characteristics in the San Antonio River Basin, the U.S. Geological Survey (USGS), in cooperation with the San Antonio River Authority and Texas Water Development Board, conducted a two-phase study to (1) collect and analyze sediment data to characterize sediment conditions in the San Antonio River downstream of San Antonio, Texas, and (2) develop and calibrate a watershed model to simulate hydrologic conditions and suspended-sediment loads for four watersheds in the San Antonio River Basin, downstream from San Antonio, Texas.
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Biota connect aquatic habitats throughout freshwater ecosystem mosaics
Schofield, Kate A.; Alexander, Laurie C.; Ridley, Caroline E.; Vanderhoof, Melanie; Fritz, Ken M.; Autrey, Bradley; DeMeester, Julie; Kepner, William G.; Lane, Charles R.; Leibowitz, Scott; Pollard, Amina I.
2018-01-01
Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.
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Hydrodynamic cavitation in microsystems. II. Simulations and optical observations
NASA Astrophysics Data System (ADS)
Medrano, M.; Pellone, C.; Zermatten, P. J.; Ayela, F.
2012-04-01
Numerical calculations in the single liquid phase and optical observations in the two-phase cavitating flow regime have been performed on microdiaphragms and microventuris fed with deionized water. Simulations have confirmed the influence of the shape of the shrinkage upon the contraction of the jet, and so on the localisation of possible cavitating area downstream. Observations of cavitating flow patterns through hybrid silicon-pyrex microdevices have been performed either via a laser excitation with a pulse duration of 6 ns, or with the help of a high-speed camera. Recorded snapshots and movies are presented. Concerning microdiaphragms, it is confirmed that very high shear rates downstream the diaphragms are the cause of bubbly flows. Concerning microventuris, a gaseous cavity forms on a boundary downstream the throat. As a consequence of a microsystem instability, the cavity displays a high frequency pulsation. Low values Strouhal numbers are associated to such a sheet cavitation. Moreover, when the intensity of the cavitating flow is reduced, there is a mismatch between the frequency of the pulsation of the cavity and the frequency of shedded clouds downstream the channel. That may be the consequence of viscous effects limiting the impingement of a re-entrant liquid jet on the attached cavity.
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Horstmann, Jan T.; Henningsson, Per; Thomas, Adrian L. R.; Bomphrey, Richard J.
2014-01-01
Recent experiments on flapping flight in animals have shown that a variety of unrelated species shed a wake behind left and right wings consisting of both tip and root vortices. Here we present an investigation using Particle Image Velocimetry (PIV) of the behaviour and interaction of trailing vortices shed by paired, fixed wings that simplify and mimic the wake of a flying animal with a non-lifting body. We measured flow velocities at five positions downstream of two adjacent NACA 0012 aerofoils and systematically varied aspect ratio, the gap between the wings (corresponding to the width of a non-lifting body), angle of attack, and the Reynolds number. The range of aspect ratios and Reynolds number where chosen to be relevant to natural fliers and swimmers, and insect flight in particular. We show that the wake behind the paired wings deformed as a consequence of the induced flow distribution such that the wingtip vortices convected downwards while the root vortices twist around each other. Vortex interaction and wake deformation became more pronounced further downstream of the wing, so the positioning of PIV measurement planes in experiments on flying animals has an important effect on subsequent force estimates due to rotating induced flow vectors. Wake deformation was most severe behind wings with lower aspect ratios and when the distance between the wings was small, suggesting that animals that match this description constitute high-risk groups in terms of measurement error. Our results, therefore, have significant implications for experimental design where wake measurements are used to estimate forces generated in animal flight. In particular, the downstream distance of the measurement plane should be minimised, notwithstanding the animal welfare constraints when measuring the wake behind flying animals. PMID:24632825
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Spinazzola, Janelle M.; Kunkel, Louis M.
2016-01-01
Introduction Since the identification of the dystrophin gene in 1986, a cure for Duchenne muscular dystrophy (DMD) has yet to be discovered. Presently, there are a number of genetic-based therapies in development aimed at restoration and/or repair of the primary defect. However, growing understanding of the pathophysiological consequences of dystrophin absence has revealed several promising downstream targets for the development of therapeutics. Areas covered In this review, we discuss various strategies for DMD therapy targeting downstream consequences of dystrophin absence including loss of muscle mass, inflammation, fibrosis, calcium overload, oxidative stress, and ischemia. The rationale of each approach and the efficacy of drugs in preclinical and clinical studies are discussed. Expert opinion For the last 30 years, effective DMD drug therapy has been limited to corticosteroids, which are associated with a number of negative side effects. Our knowledge of the consequences of dystrophin absence that contribute to DMD pathology has revealed several potential therapeutic targets. Some of these approaches may have potential to improve or slow disease progression independently or in combination with genetic-based approaches. The applicability of these pharmacological therapies to DMD patients irrespective of their genetic mutation, as well as the potential benefits even for advanced stage patients warrants their continued investigation. PMID:28670506
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NASA Astrophysics Data System (ADS)
Mclaughlin, D. L.; Jones, C. N.; Evenson, G. R.; Golden, H. E.; Lane, C.; Alexander, L. C.; Lang, M.
2017-12-01
Combined geospatial and modeling approaches are required to fully enumerate wetland hydrologic connectivity and downstream effects. Here, we utilized both geospatial analysis and hydrologic modeling to explore drivers and consequences of modified surface water connectivity in the Delmarva Peninsula, with particular focus on increased connectivity via pervasive wetland ditching. Our geospatial analysis quantified both historical and contemporary wetland storage capacity across the region, and suggests that over 70% of historical storage capacity has been lost due to this ditching. Building upon this analysis, we applied a catchment-scale model to simulate implications of reduced storage capacity on catchment-scale hydrology. In short, increased connectivity (and concomitantly reduced wetland water storage capacity) decreases catchment inundation extent and spatial heterogeneity, shortens cumulative residence times, and increases downstream flow variation with evident effects on peak and baseflow dynamics. As such, alterations in connectivity have implications for hydrologically mediated functions in catchments (e.g., nutrient removal) and downstream systems (e.g., maintenance of flow for aquatic habitat). Our work elucidates such consequences in Delmarva Peninsula while also providing new tools for broad application to target wetland restoration and conservation. Views expressed are those of the authors and do not necessarily reflect policies of the US EPA or US FWS.
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NASA Astrophysics Data System (ADS)
Peng, M.; Zhang, L. M.
2013-02-01
Tangjiashan landslide dam, which was triggered by the Ms = 8.0 Wenchuan earthquake in 2008 in China, threatened 1.2 million people downstream of the dam. All people in Beichuan Town 3.5 km downstream of the dam and 197 thousand people in Mianyang City 85 km downstream of the dam were evacuated 10 days before the breaching of the dam. Making such an important decision under uncertainty was difficult. This paper applied a dynamic decision-making framework for dam-break emergency management (DYDEM) to help rational decision in the emergency management of the Tangjiashan landslide dam. Three stages are identified with different levels of hydrological, geological and social-economic information along the timeline of the landslide dam failure event. The probability of dam failure is taken as a time series. The dam breaching parameters are predicted with a set of empirical models in stage 1 when no soil property information is known, and a physical model in stages 2 and 3 when knowledge of soil properties has been obtained. The flood routing downstream of the dam in these three stages is analyzed to evaluate the population at risk (PAR). The flood consequences, including evacuation costs, flood damage and monetized loss of life, are evaluated as functions of warning time using a human risk analysis model based on Bayesian networks. Finally, dynamic decision analysis is conducted to find the optimal time to evacuate the population at risk with minimum total loss in each of these three stages.
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[Avoidance of injuries to migrating fish by hydropower and water intake plants].
Adam, B
2004-03-01
Every year numerous downstream migrating fish are lethally injured by hydro power plants and inlet works. Especially the katadromous Eel (Anguilla anguilla) and anadromous species like Atlantic Salmon (Salmo salar), which have to migrate downstream into the ocean for closing their life cycle, are highly endangered. Due to their specific migratory behavioral pattern, size and morphology conventional protection techniques, like screens do not properly keep them out from getting into the power plant intakes. Despite of the relevance of this problem for ecology and fishing, there are no protection and downstream migration facilities in Europe available, which can efficiently avoid the damage of all species and sizes of downstream migrating fish. Nevertheless according to protect the fish populations it's necessary to use consequently fish protection and downstream migration facilities, i.e. mechanical barrieres or alternative techniques like early warning systems as a prerequisit for a fish-friendly operational management of hydro power plants.
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Effects of commercial harvest on shovelnose sturgeon populations in the Upper Mississippi River
Koch, Jeff D.; Quist, Michael C.; Pierce, Clay L.; Hansen, Kirk A.; Steuck, Michael J.
2009-01-01
Shovelnose sturgeon Scaphirhynchus platorynchus have become an increasingly important commercial species in the upper Mississippi River (UMR) because of the collapse of foreign sturgeon (family Acipenseridae) populations and bans on imported caviar. In response to concerns about the sustainability of the commercial shovelnose sturgeon fishery in the UMR, we undertook this study to describe the demographics of the shovelnose sturgeon population and evaluate the influence of commercial harvest on shovelnose sturgeon populations in the UMR. A total of 1,682 shovelnose sturgeon were collected from eight study pools in 2006 and 2007 (Pools 4, 7, 9, 11, 13, 14, 16, and 18). Shovelnose sturgeon from upstream pools generally had greater lengths, weights, and ages than those from downstream pools. Additionally, mortality estimates were lower in upstream pools (Pools 4, 7, 9, and 11) than in downstream pools (Pools 13, 14, 16, and 18). Linear regression suggested that the slower growth of shovelnose sturgeon is a consequence of commercial harvest in the UMR. Modeling of potential management scenarios suggested that a 685-mm minimum length limit is necessary to prevent growth and recruitment overfishing of shovelnose sturgeon in the UMR.
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NASA Astrophysics Data System (ADS)
Franca, M. J.; Battisacco, E.; Schleiss, A. J.
2014-12-01
The transport of sediments by water throughout the river basins, from the steep slopes of the upstream regions to the sea level, is recognizable important to keep the natural conditions of rivers with a role on their ecology processes. Over the last decades, a reduction on the supply of sand and gravel has been observed downstream dams existing in several alpine rivers. Many studies highlight that the presence of a dam strongly modifies the river behavior in the downstream reach, in terms of morphology and hydrodynamics, with consequences on local ecology. Sediment deficit, bed armoring, river incision and bank instability are the main effects which affect negatively the aquatic habitats and the water quality. One of the proposed techniques to solve the problem of sediment deficit downstream dams, already adopted in few Japanese and German rivers although on an unsatisfactory fashion, is the artificial replenishment of these. Generally, it was verified that the erosion of the replenishments was not satisfactory and the transport rate was not enough to move the sediments to sufficient downstream distances. In order to improve and to provide an engineering answer to make this technique more applicable, a series of laboratory tests are ran as preparatory study to understand the hydrodynamics of the river flow when the replenishment technique is applied. Erodible volumes, with different lengths and submergence conditions, reproducing sediment replenishments volumes, are positioned along a channel bank. Different geometrical combinations of erodible sediment volumes are tested as well on the experimental flume. The first results of the experimental research, concerning erosion time evolution, the influence of discharge and the distance travelled by the eroded sediments, will be presented and discussed.
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40 CFR 80.210 - What sulfur standards apply to gasoline downstream from refineries and importers?
Code of Federal Regulations, 2012 CFR
2012-07-01
... gasoline downstream from refineries and importers? 80.210 Section 80.210 Protection of Environment... Gasoline Sulfur Gasoline Sulfur Standards § 80.210 What sulfur standards apply to gasoline downstream from refineries and importers? The sulfur standard for gasoline at any point in the gasoline distribution system...
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40 CFR 80.210 - What sulfur standards apply to gasoline downstream from refineries and importers?
Code of Federal Regulations, 2014 CFR
2014-07-01
... gasoline downstream from refineries and importers? 80.210 Section 80.210 Protection of Environment... Gasoline Sulfur Gasoline Sulfur Standards § 80.210 What sulfur standards apply to gasoline downstream from refineries and importers? The sulfur standard for gasoline at any point in the gasoline distribution system...
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40 CFR 80.210 - What sulfur standards apply to gasoline downstream from refineries and importers?
Code of Federal Regulations, 2013 CFR
2013-07-01
... gasoline downstream from refineries and importers? 80.210 Section 80.210 Protection of Environment... Gasoline Sulfur Gasoline Sulfur Standards § 80.210 What sulfur standards apply to gasoline downstream from refineries and importers? The sulfur standard for gasoline at any point in the gasoline distribution system...
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40 CFR 80.210 - What sulfur standards apply to gasoline downstream from refineries and importers?
Code of Federal Regulations, 2011 CFR
2011-07-01
... gasoline downstream from refineries and importers? 80.210 Section 80.210 Protection of Environment... Gasoline Sulfur Gasoline Sulfur Standards § 80.210 What sulfur standards apply to gasoline downstream from refineries and importers? The sulfur standard for gasoline at any point in the gasoline distribution system...
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40 CFR 80.210 - What sulfur standards apply to gasoline downstream from refineries and importers?
Code of Federal Regulations, 2010 CFR
2010-07-01
... gasoline downstream from refineries and importers? 80.210 Section 80.210 Protection of Environment... Gasoline Sulfur Gasoline Sulfur Standards § 80.210 What sulfur standards apply to gasoline downstream from refineries and importers? The sulfur standard for gasoline at any point in the gasoline distribution system...
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Biobehavioral Influences on Cancer Progression
Costanzo, Erin S.; Sood, Anil K.; Lutgendorf, Susan K.
2010-01-01
Synopsis This review focuses on the contributions of stress-related behavioral factors to cancer growth and metastasis and the biobehavioral mechanisms underlying these relationships. We describe behavioral factors that are important in modulation of the stress response and the pivotal role of neuroendocrine regulation in the downstream alteration of physiological pathways relevant to cancer control, including the cellular immune response, inflammation, and tumor angiogenesis, invasion, and cell-signaling pathways. Consequences for cancer progression and metastasis, as well as quality of life, are delineated. Finally, behavioral and pharmacological interventions for cancer patients with the potential to alter these biobehavioral pathways are discussed. PMID:21094927
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NASA Astrophysics Data System (ADS)
Allen, Simon; Ballesteros, Juan Antonio; Huggel, Christian; Linsbauer, Andreas; Mal, Suraj; Singh Rana, Ranbir; Singh Randhawa, Surjeet; Ruiz-Villanueva, Virginia; Salzmann, Nadine; Singh Samant, Sher; Stoffel, Markus
2017-04-01
Mountain environments around the world are often considered to be amongst the most sensitive to the impacts of climate change. For people living in mountain communities, there are clear challenges to be faced as their livelihoods and subsistence are directly dependent on their surrounding natural environment. But what of the wider implications for societies and large urban settlements living downstream - why should they care about the climate-driven changes occurring potentially hundreds of kilometers away in the snow and ice capped mountains? In this contribution we address this question, drawing on studies and experiences gained within joint Indo-Swiss research collaborations focused on the Indian Himalayan states of Himachal Pradesh and Uttarakhand. With the Intergovernmental Panel on Climate Change currently embarking on the scoping of their 6th Assessment Cycle, which includes a planned Special Report on Oceans and the Cryosphere, this contribution provides a timely reminder of the importance of mountain regions, and potential far-reaching consequences of changes in the mountain cryosphere. Our studies highlight several key themes which link the mountain environment to the lowland populated areas, including the role of the mountain cryosphere as a water source, far-reaching hazards and disasters that can originate from mountain regions, the role of mountains in providing essential ecosystem services, the economic importance of tourism in mountain regions, and the importance of transportation routes which pass through mountain environments. These themes are intricately linked, as for example demonstrated during the 2013 Uttarakhand flood disaster where many of the approximately 6000 fatalities were tourists visiting high mountain pilgrimage sites. As a consequence of the disaster, tourists stayed away during subsequent seasons with significant economic impacts felt across the State. In Himachal Pradesh, a key national transportation corridor is the Rohtang pass and tunnel, linking Kullu with Lahual and Spiti districts in the north. Our studies have shown that this corridor is threatened by a range of climate related hazards, including debris flows, flash floods, and snow avalanches, highlighting the need to consider climate change scenarios to ensure the long-term sustainability of vital transportation networks in mountain regions. Often a transboundary perspective is required. For example, in 2000 a landslide dammed lake located in Tibet breached, causing the loss of at least 156 lives in the Indian district of Kinnaur located 100 km downstream, with infrastructural damage and loss of revenue estimated at up to US 222 million. Considering the wide-ranging ways in which downstream societies interact with and depend upon mountain environments, systematic monitoring and assessment of changes in the high mountain cryosphere is essential to ensure that adaptation decisions are evidence-based, and well supported by latest scientific understanding.
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Resilience scales of a dammed tropical river
NASA Astrophysics Data System (ADS)
Calamita, Elisa; Schmid, Martin; Wehrli, Bernhard
2017-04-01
Artificial river impoundments disrupt the seasonality and dynamics of thermal, chemical, morphological and ecological regimes in river systems. These alterations affect the aquatic ecosystems in space and time and specifically modify the seasonality and the longitudinal gradients of important biogeochemical processes. Resilience of river systems to anthropogenic stressors enables their recovery along the flow path; however little is known about the longitudinal distance that rivers need to partially restore their physical, chemical and biological integrity. In this study, the concept of a "resilience scale" will be explored for different water quality parameters downstream of Kariba dam, the largest artificial lake in the Zambezi basin (South-East Africa). The goal of this project is to develop a modelling framework to investigate and quantify the impact of large dams on downstream water quality in tropical context. In particular, we aim to assess the degree of reversibility of the main downstream alterations (temperature, oxygen, nutrients) and consequently the quantification of their longitudinal extent. Coupling in-situ measurements with hydraulic and hydrological parameters such as travel times, will allow us to define a physically-based parametrization of the different resilience scales for tropical rivers. The results will be used for improving future dam management at the local scale and assessing the ecological impact of planned dams at the catchment scale.
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Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad; Herzsprung, Peter; Schmitt-Kopplin, Philippe; Neu, Thomas R.; Graeber, Daniel; Osorio, Sebastian; Valenzuela, Jose; Carlos Reyes, Juan; Woelfl, Stefan; Hertkorn, Norbert
2017-01-01
Aquacultures are of great economic importance worldwide but pollute pristine headwater streams, lakes, and estuaries. However, there are no in-depth studies of the consequences of aquacultures on dissolved organic matter (DOM) composition and structure. We performed a detailed molecular level characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures. Aquacultures released large quantities of readily bioavailable metabolites (primarily carbohydrates and peptides/proteins, and lipids), causing the organic matter downstream of all the investigated aquacultures to deviate strongly from the highly processed, polydisperse and molecularly heterogeneous DOM found in pristine rivers. However, the upstream individual catchment DOM signatures remained distinguishable at the downstream sites. The benthic algal biovolume decreased and the bacterial biovolume and production increased downstream of the aquacultures, shifting stream ecosystems to a more heterotrophic state and thus impairing the ecosystem health. The bacterial DOM degradation rates explain the attenuation of aquaculture DOM within the subsequent stream reaches. This knowledge may aid the development of improved waste processing facilities and may help to define emission thresholds to protect sensitive stream ecosystems. PMID:28256613
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NASA Astrophysics Data System (ADS)
Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad; Herzsprung, Peter; Schmitt-Kopplin, Philippe; Neu, Thomas R.; Graeber, Daniel; Osorio, Sebastian; Valenzuela, Jose; Carlos Reyes, Juan; Woelfl, Stefan; Hertkorn, Norbert
2017-03-01
Aquacultures are of great economic importance worldwide but pollute pristine headwater streams, lakes, and estuaries. However, there are no in-depth studies of the consequences of aquacultures on dissolved organic matter (DOM) composition and structure. We performed a detailed molecular level characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures. Aquacultures released large quantities of readily bioavailable metabolites (primarily carbohydrates and peptides/proteins, and lipids), causing the organic matter downstream of all the investigated aquacultures to deviate strongly from the highly processed, polydisperse and molecularly heterogeneous DOM found in pristine rivers. However, the upstream individual catchment DOM signatures remained distinguishable at the downstream sites. The benthic algal biovolume decreased and the bacterial biovolume and production increased downstream of the aquacultures, shifting stream ecosystems to a more heterotrophic state and thus impairing the ecosystem health. The bacterial DOM degradation rates explain the attenuation of aquaculture DOM within the subsequent stream reaches. This knowledge may aid the development of improved waste processing facilities and may help to define emission thresholds to protect sensitive stream ecosystems.
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Collagen VI disorders: Insights on form and function in the extracellular matrix and beyond.
Lamandé, Shireen R; Bateman, John F
2017-12-22
Mutations in the three canonical collagen VI genes, COL6A1, COL6A2 and COL6A3, cause a spectrum of muscle disease from Bethlem myopathy at the mild end to the severe Ullrich congenital muscular dystrophy. Mutations can be either dominant or recessive and the resulting clinical severity is influenced by the way mutations impact the complex collagen VI assembly process. Most mutations are found towards the N-terminus of the triple helical collagenous domain and compromise extracellular microfibril assembly. Outside the triple helix collagen VI is highly polymorphic and discriminating mutations from rare benign changes remains a major diagnostic challenge. Collagen VI deficiency alters extracellular matrix structure and biomechanical properties and leads to increased apoptosis and oxidative stress, decreased autophagy, and impaired muscle regeneration. Therapies that target these downstream consequences have been tested in a collagen VI null mouse and also in small human trials where they show modest clinical efficacy. An important role for collagen VI in obesity, cancer and diabetes is emerging. A major barrier to developing effective therapies is the paucity of information about how collagen VI deficiency in the extracellular matrix signals the final downstream consequences - the receptors involved and the intracellular messengers await further characterization. Copyright © 2017 International Society of Matrix Biology. Published by Elsevier B.V. All rights reserved.
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Cross Talk between Two Antioxidant Systems, Thioredoxin and DJ-1: Consequences for Cancer
Raninga, Prahlad V.; Trapani, Giovanna Di; Tonissen, Kathryn F.
2014-01-01
Oxidative stress, which is associated with an increased concentration of reactive oxygen species (ROS), is involved in the pathogenesis of numerous diseases including cancer. In response to increased ROS levels, cellular antioxidant molecules such as thioredoxin, peroxiredoxins, glutaredoxins, DJ-1, and superoxide dismutases are upregulated to counteract the detrimental effect of ROS. However, cancer cells take advantage of upregulated antioxidant molecules for protection against ROS-induced cell damage. This review focuses on two antioxidant systems, Thioredoxin and DJ-1, which are upregulated in many human cancer types, correlating with tumour proliferation, survival, and chemo-resistance. Thus, both of these antioxidant molecules serve as potential molecular targets to treat cancer. However, targeting one of these antioxidants alone may not be an effective anti-cancer therapy. Both of these antioxidant molecules are interlinked and act on similar downstream targets such as NF-κβ, PTEN, and Nrf2 to exert cytoprotection. Inhibiting either thioredoxin or DJ-1 alone may allow the other antioxidant to activate downstream signalling cascades leading to tumour cell survival and proliferation. Targeting both thioredoxin and DJ-1 in conjunction may completely shut down the antioxidant defence system regulated by these molecules. This review focuses on the cross-talk between thioredoxin and DJ-1 and highlights the importance and consequences of targeting thioredoxin and DJ-1 together to develop an effective anti-cancer therapeutic strategy. PMID:25593990
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Coarse-scale movement patterns of a small-bodied fish inhabiting a desert stream
Dzul, M.C.; Quist, M.C.; Dinsmore, S.J.; Gaines, D.B.; Bower, M.R.
2013-01-01
Located on the floor of Death Valley (CA, USA), Salt Creek harbors a single fish species, the Salt Creek pupfish, Cyprinodon salinus salinus, which has adapted to this extremely harsh environment. Salt Creek is fed by an underground spring and is comprised of numerous pools, runs, and marshes that exhibit substantial variability in temperature, salinity, and dissolved oxygen concentrations. In addition, the wetted area of Salt Creek is reduced throughout the summer months due to high rates of evaporation, with some reaches drying completely. Therefore, it seems logical that short- and long-term movement patterns may play an important role in Salt Creek pupfish population dynamics. The objective of this study was to describe coarse-scale movements of Salt Creek pupfish in Salt Creek during their breeding season from March to May. Sex ratios and length–frequency distributions varied spatially within Salt Creek, suggesting population segregation during the breeding season. Long-distance movements were generally rare, although two fish moved more than 1.2 km. Movement in upstream reaches was rare or absent, in contrast to the greater movement observed in downstream reaches (29% of recaptures). Temporal trends and demographic patterns in movement were not observed. Because the two most downstream habitats dry up in the summer, our results indicate that coarse-scale movements that re-populate downstream reaches likely occur during other times of year. Consequently, the importance of small- and large-scale movements is influenced by season. Further assessment of Salt Creek movement patterns conducted during other times of year may better illuminate long-distance movement patterns and source-sink dynamics.
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Marschall, Elizabeth A.; Mather, Martha E.; Parrish, Donna; Allison, Gary W.; McMenemy, James R.
2011-01-01
Disruption to migration is a growing problem for conservation and restoration of animal populations. Anthropogenic barriers along migration paths can delay or prolong migrations, which may result in a mismatch with migration-timing adaptations. To understand the interaction of dams (as barriers along a migration path), seasonally changing environmental conditions, timing of Atlantic salmon (Salmo salar) downstream migration, and ultimate migration success, we used 10 years of river temperature and discharge data as a template upon which we simulated downstream movement of salmon. Atlantic salmon is a cool-water species whose downstream migrating smolts must complete migration before river temperatures become too warm. We found that dams had a local effect on survival as well as a survival effect that was spatially and temporally removed from the encounter with the dam. While smolts are delayed by dams, temperatures downstream can reach lethal or near-lethal temperatures; as a result, the match between completion of migration and the window of appropriate migration conditions can be disrupted. The strength of this spatially and temporally removed effect is at least comparable to the local effects of dams in determining smolt migration success in the presence of dams. We also considered smolts from different tributaries, varying in distance from the river mouth, to assess the potential importance of locally adapted migration timing on the effect of barriers. Migration-initiation temperature affected modeled smolt survival differentially across tributaries, with the success of smolts from upstream tributaries being much more variable across years than that of smolts with a shorter distance to travel. As a whole, these results point to the importance of broadening our spatial and temporal view when managing migrating populations. We must consider not only how many individuals never make it across migration barriers, but also the spatially and temporally removed consequences of delays at the barriers for those individuals that successfully navigate them.
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Marschall, E.A.; Mather, M. E.; Parrish, D.L.; Allison, G.W.; McMenemy, J.R.
2011-01-01
Disruption to migration is a growing problem for conservation and restoration of animal populations. Anthropogenic barriers along migration paths can delay or prolong migrations, which may result in a mismatch with migration-timing adaptations. To understand the interaction of dams (as barriers along a migration path), seasonally changing environmental conditions, timing of Atlantic salmon (Salmo salar) downstream migration, and ultimate migration success, we used 10 years of river temperature and discharge data as a template upon which we simulated downstream movement of salmon. Atlantic salmon is a cool-water species whose downstream migrating smolts must complete migration before river temperatures become too warm. We found that dams had a local effect on survival as well as a survival effect that was spatially and temporally removed from the encounter with the dam. While smolts are delayed by dams, temperatures downstream can reach lethal or near-lethal temperatures;as a result, the match between completion of migration and the window of appropriate migration conditions can be disrupted. The strength of this spatially and temporally removed effect is at least comparable to the local effects of dams in determining smolt migration success in the presence of dams. We also considered smolts from different tributaries, varying in distance from the river mouth, to assess the potential importance of locally adapted migration timing on the effect of barriers. Migration-initiation temperature affected modeled smolt survival differentially across tributaries, with the success of smolts from upstream tributaries being much more variable across years than that of smolts with a shorter distance to travel. As a whole, these results point to the importance of broadening our spatial and temporal view when managing migrating populations. We must consider not only how many individuals never make it across migration barriers, but also the spatially and temporally removed consequences of delays at the barriers for those individuals that successfully navigate them. ??2011 by the Ecological Society of America.
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Flipping the switch: power, social dominance, and expectancies of mental energy change.
Egan, Patrick M; Hirt, Edward R
2015-03-01
Research suggests that high levels of interpersonal power can promote enhanced executive functioning capabilities. The present work explored whether this effect is contingent upon expectancies concerning power's downstream cognitive consequences. Study 1 showed that social dominance orientation (SDO) predicted idiosyncratic expectancies of mental energy change toward interpersonal power. Study 2 showed that SDO moderated the executive functioning changes associated with interpersonal power and that this moderation effect was contingent upon changes in perceived mental depletion. Study 3 showed that directly manipulating expectancies of mental energy change concerning interpersonal power moderated the executive functioning consequences of power and that this moderation effect was contingent upon SDO and changes in perceived mental depletion. Together, the present findings underscore the importance of expectancies and individual differences in understanding the effects of interpersonal power. © 2014 by the Society for Personality and Social Psychology, Inc.
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Kreutzfeldt, Mario; Bergthaler, Andreas; Fernandez, Marylise; Brück, Wolfgang; Steinbach, Karin; Vorm, Mariann; Coras, Roland; Blümcke, Ingmar; Bonilla, Weldy V.; Fleige, Anne; Forman, Ruth; Müller, Werner; Becher, Burkhard; Misgeld, Thomas; Kerschensteiner, Martin; Pinschewer, Daniel D.
2013-01-01
Neurons are postmitotic and thus irreplaceable cells of the central nervous system (CNS). Accordingly, CNS inflammation with resulting neuronal damage can have devastating consequences. We investigated molecular mediators and structural consequences of CD8+ T lymphocyte (CTL) attack on neurons in vivo. In a viral encephalitis model in mice, disease depended on CTL-derived interferon-γ (IFN-γ) and neuronal IFN-γ signaling. Downstream STAT1 phosphorylation and nuclear translocation in neurons were associated with dendrite and synapse loss (deafferentation). Analogous molecular and structural alterations were also found in human Rasmussen encephalitis, a CTL-mediated human autoimmune disorder of the CNS. Importantly, therapeutic intervention by IFN-γ blocking antibody prevented neuronal deafferentation and clinical disease without reducing CTL responses or CNS infiltration. These findings identify neuronal IFN-γ signaling as a novel target for neuroprotective interventions in CTL-mediated CNS disease. PMID:23999498
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The antecedents and consequences of human behavioral mimicry.
Chartrand, Tanya L; Lakin, Jessica L
2013-01-01
Behavioral mimicry--the automatic imitation of gestures, postures, mannerisms, and other motor movements--is pervasive in human interactions. The current review focuses on two recent themes in the mimicry literature. First, an analysis of the moderators of mimicry uncovers the various motivational, social, emotional, and personality factors that lead to more or less mimicry of an interaction partner in a given situation. Second, a significant amount of recent research has identified important downstream consequences of mimicking or being mimicked by another person. These include not only increased prosociality between interactants, but also unexpected effects on the individual, such as cognitive processing style, attitudes, consumer preferences, self-regulatory ability, and academic performance. Behavioral mimicry is also placed in its broader context: a form of interpersonal coordination. It is compared to interactional synchrony and other social contagion effects, including verbal, goal, and emotional contagion and attitudinal convergence.
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Mountain roads and trails are proliferating throughout developing Southeast Asia with severe but largely unrecognized long-term consequences related to effects of landslides and surface erosion on communities and downstream resources.
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NASA Astrophysics Data System (ADS)
Leever, K. A.; Matenco, L.; Garcia-Castellanos, D.; Cloetingh, S. A. P. L.
2011-04-01
The Pannonian and Dacic Basins in SE Europe are presently connected by the Danube River across the South Carpathians, to which they are in a back-arc and foreland position respectively. Part of the Paratethys realm during the Neogene, open water communication between the basins was interrupted by the Late Miocene uplift of the Carpathians. Different mechanisms have been proposed for the formation of the Danube gateway: capture of the upstream lake or an upstream river or incision of an antecedent river. Estimates on its age range from Late Miocene to Quaternary. A related issue is the effect of the large Mediterranean sea level fall related to the Messinian Salinity Crisis on the Paratethys subbasins, specifically the "isolated" Pannonian Basin. In a synthetic numerical modelling study, using a pseudo-3D code integrating tectonics, surface processes and isostasy, we addressed the causes and effects of changes in connectivity between two large sedimentary basins separated by an elevated barrier. Specifically, we aimed to find the expression of connectivity events in the sedimentary record in general and the consequences for the evolution of the Pannonian-Dacic area in particular. We studied a range of parameters including the geometry and uplift rate of the barrier, downstream sea level change and lithosphere rigidity. We found that changes in connectivity are expressed in the sedimentary record through their effect on base level in the upstream basin and supply in the downstream basin. The most important factors controlling the response are the elevation difference between the basins and the upstream accommodation space at the time of reconnection. The most pronounced effect of reconnection through lake capture is predicted for a large elevation difference and limited upstream accommodation space. Downstream increase in sediment supply is dependent on the latter rather than the reconnection event itself. Of the parameters we tested, the rigidity of the lithosphere was found to be of major importance by its control on sediment loaded subsidence and generation of accommodation space. A downstream sea level change is unlikely to induce capture, but may affect the upstream lake level by enhancing incision in a pre-existing gateway. In the Pannonian-Dacic region, the mechanically weak, continuously subsiding Pannonian lithosphere allowed accommodation of significant volumes of continental sedimentation and as a consequence, transfer of excess sediment to the downstream Dacic Basin was only gradual. The Messinian sea level fall in the Dacic Basin could have been recorded in the Pannonian Basin only if a connection between the basins already existed. More detailed modelling of river incision taking into account lateral differences in erodibility in the South Carpathians will be required to give better time constraints on the formation of the Danube Gateway.
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Unlocking the sugar "steric gate" of DNA polymerases.
Brown, Jessica A; Suo, Zucai
2011-02-22
To maintain genomic stability, ribonucleotide incorporation during DNA synthesis is controlled predominantly at the DNA polymerase level. A steric clash between the 2'-hydroxyl of an incoming ribonucleotide and a bulky active site residue, known as the "steric gate", establishes an effective mechanism for most DNA polymerases to selectively insert deoxyribonucleotides. Recent kinetic, structural, and in vivo studies have illuminated novel features about ribonucleotide exclusion and the mechanistic consequences of ribonucleotide misincorporation on downstream events, such as the bypass of a ribonucleotide in a DNA template and the subsequent extension of the DNA lesion bypass product. These important findings are summarized in this review.
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Cultural relativism: maintenance of genomic imprints in pluripotent stem cell culture systems.
Greenberg, Maxim Vc; Bourc'his, Déborah
2015-04-01
Pluripotent stem cells (PSCs) in culture have become a widely used model for studying events occurring during mammalian development; they also present an exciting avenue for therapeutics. However, compared to their in vivo counterparts, cultured PSC derivatives have unique properties, and it is well established that their epigenome is sensitive to medium composition. Here we review the specific effects on genomic imprints in various PSC types and culture systems. Imprinted gene regulation is developmentally important, and imprinting defects have been associated with several human diseases. Therefore, imprint abnormalities in PSCs may have considerable consequences for downstream applications. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Unlocking the Sugar ‘Steric Gate’ of DNA Polymerases†
Brown, Jessica A.; Suo, Zucai
2011-01-01
To maintain genomic stability, ribonucleotide incorporation during DNA synthesis is controlled predominantly at the DNA polymerase level. A steric clash between the 2′-hydroxyl of an incoming ribonucleotide and a bulky active site residue, known as the ‘steric gate’, establishes an effective mechanism for most DNA polymerases to selectively insert deoxyribonucleotides. Recent kinetic, structural, and in vivo studies have illuminated novel features about ribonucleotide exclusion and the mechanistic consequences of ribonucleotide misincorporation on downstream events, such as the bypass of a ribonucleotide in a DNA template and the subsequent extension of the DNA lesion bypass product. These important findings are summarized in this review article. PMID:21226515
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Code of Federal Regulations, 2014 CFR
2014-07-01
... 40 Protection of Environment 17 2014-07-01 2014-07-01 false Gasoline sulfur standards and... ADDITIVES Gasoline Sulfur § 80.1604 Gasoline sulfur standards and requirements for parties downstream of refiners and importers. (a) The sulfur standard for gasoline at any downstream location shall be determined...
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Biolabile ferrous iron bearing nanoparticles in glacial sediments
NASA Astrophysics Data System (ADS)
Hawkings, Jon R.; Benning, Liane G.; Raiswell, Rob; Kaulich, Burkhard; Araki, Tohru; Abyaneh, Majid; Stockdale, Anthony; Koch-Müller, Monika; Wadham, Jemma L.; Tranter, Martyn
2018-07-01
Glaciers and ice sheets are a significant source of nanoparticulate Fe, which is potentially important in sustaining the high productivity observed in the near-coastal regions proximal to terrestrial ice cover. However, the bioavailability of particulate iron is poorly understood, despite its importance in the ocean Fe inventory. We combined high-resolution imaging and spectroscopy to investigate the abundance, morphology and valence state of particulate iron in glacial sediments. Our results document the widespread occurrence of amorphous and Fe(II)-rich and Fe(II)-bearing nanoparticles in Arctic glacial meltwaters and iceberg debris, compared to Fe(III)-rich dominated particulates in an aeolian dust sample. Fe(II) is thought to be highly biolabile in marine environments. Our work shows that glacially derived Fe is more labile than previously assumed, and consequently that glaciers and ice sheets are therefore able to export potentially bioavailable Fe(II)-containing nanoparticulate material to downstream ecosystems, including those in a marine setting. Our findings provide further evidence that Greenland Ice Sheet meltwaters may provide biolabile particulate Fe that may fuel the large summer phytoplankton bloom in the Labrador Sea, and that Fe(II)-rich particulates from a region of very high productivity downstream of a polar ice sheet may be glacial in origin.
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40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?
Code of Federal Regulations, 2014 CFR
2014-07-01
... blendstock or finished gasoline to produce gasoline. (2) Oxygenate added to PCG downstream of the refinery... downstream of the refinery or importer that produced or imported PCG adds oxygenate to such product, it shall... credit generation under this subpart. (3) Butane added to finished gasoline, RBOB, CBOB downstream of the...
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Using satellite images to monitor glacial-lake outburst floods: Lago Cachet Dos drainage, Chile
Friesen, Beverly A.; Cole, Christopher J.; Nimick, David A.; Wilson, Earl M.; Fahey, Mark J.; McGrath, Daniel J.; Leidich, Jonathan
2015-01-01
During 2008–2013, 14 GLOFs were released from Lago Cachet Dos and created environmental and safety concerns for downstream residents and to infrastructure. If GLOFs and the consequent headward erosion continue, the moraine that creates Lago Cachet Uno could be destabilized and breached, and the two lakes could merge. If the two lakes become connected, the volume of future GLOFs likely would be greater and thus cause longer and (or) more extensive flooding downstream. Additional GLOFs from Lago Cachet Dos are expected in the future, and continued environmental monitoring could provide an early warning system as well as scientific information that could increase our understanding of GLOFs and their consequences. GLOFs occur in glaciated areas around the world and remote sensing technologies can allow researchers to better understand—and potentially predict—future GLOF events.
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He, Daming; Wu, Ruidong; Feng, Yan; Li, Yungang; Ding, Chengzhi; Wang, Wenling; Yu, Douglas W
2014-10-01
China is Asia's most important upstream riparian country, sharing 110 rivers and lakes with 18 downstream countries. Consequently, China's management of transboundary water resources must consider both environmental and geopolitical risks.The major threats to and conflicts over international rivers in China revolve around biotic homogenisation due to the installation of transport links, water allocation, water pollution, alteration of natural flow patterns and disruption of fisheries due to the installation of hydropower dams, and droughts and floods exacerbated by climate change. Because these problems have an international component, they fall under China's Peaceful Rise strategy, mandating that transboundary conflicts be resolved amicably as part of the overarching goal of increasing regional economic growth with as little conflict as possible.Science-backed policy is more likely to result in long term, mutually agreeable solutions; the results of applied ecological research have already resulted in a number of mitigation measures, including setting operational thresholds to reduce the downstream impact of dams, designating protected areas along key river stretches where dams cannot be installed (one dam in a critical location has been cancelled), and the installation of terrestrial protected-area networks. Synthesis and applications . Applied ecology will continue to play an important role in the diagnosis and resolution of environmental threats to China's transboundary waters. More importantly, applied ecology can inform the development of a transboundary environmental compensation mechanism and regional consultative mechanisms that support informed, cooperative decision-making for China and its riparian neighbours.
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He, Daming; Wu, Ruidong; Feng, Yan; Li, Yungang; Ding, Chengzhi; Wang, Wenling; Yu, Douglas W
2014-01-01
China is Asia's most important upstream riparian country, sharing 110 rivers and lakes with 18 downstream countries. Consequently, China's management of transboundary water resources must consider both environmental and geopolitical risks. The major threats to and conflicts over international rivers in China revolve around biotic homogenisation due to the installation of transport links, water allocation, water pollution, alteration of natural flow patterns and disruption of fisheries due to the installation of hydropower dams, and droughts and floods exacerbated by climate change. Because these problems have an international component, they fall under China's Peaceful Rise strategy, mandating that transboundary conflicts be resolved amicably as part of the overarching goal of increasing regional economic growth with as little conflict as possible. Science-backed policy is more likely to result in long term, mutually agreeable solutions; the results of applied ecological research have already resulted in a number of mitigation measures, including setting operational thresholds to reduce the downstream impact of dams, designating protected areas along key river stretches where dams cannot be installed (one dam in a critical location has been cancelled), and the installation of terrestrial protected-area networks. Synthesis and applications. Applied ecology will continue to play an important role in the diagnosis and resolution of environmental threats to China's transboundary waters. More importantly, applied ecology can inform the development of a transboundary environmental compensation mechanism and regional consultative mechanisms that support informed, cooperative decision-making for China and its riparian neighbours. PMID:25558084
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Antibiotic and Anti-Inflammatory Therapies for Cystic Fibrosis
Chmiel, James F.; Konstan, Michael W.; Elborn, J. Stuart
2013-01-01
Cystic fibrosis (CF) lung disease is characterized by chronic bacterial infection and an unremitting inflammatory response, which are responsible for most of CF morbidity and mortality. The median expected survival has increased from <6 mo in 1940 to >38 yr now. This dramatic improvement, although not great enough, is due to the development of therapies directed at secondary disease pathologies, especially antibiotics. The importance of developing treatments directed against the vigorous inflammatory response was realized in the 1990s. New therapies directed toward the basic defect are now visible on the horizon. However, the impact of these drugs on downstream pathological consequences is unknown. It is likely that antibiotics and anti-inflammatory drugs will remain an important part of the maintenance regimen for CF in the foreseeable future. Current and future antibiotic and anti-inflammatory therapies for CF are reviewed. PMID:23880054
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Preparative Purification of Recombinant Proteins: Current Status and Future Trends
Saraswat, Mayank; Ravidá, Alessandra; Holthofer, Harry
2013-01-01
Advances in fermentation technologies have resulted in the production of increased yields of proteins of economic, biopharmaceutical, and medicinal importance. Consequently, there is an absolute requirement for the development of rapid, cost-effective methodologies which facilitate the purification of such products in the absence of contaminants, such as superfluous proteins and endotoxins. Here, we provide a comprehensive overview of a selection of key purification methodologies currently being applied in both academic and industrial settings and discuss how innovative and effective protocols such as aqueous two-phase partitioning, membrane chromatography, and high-performance tangential flow filtration may be applied independently of or in conjunction with more traditional protocols for downstream processing applications. PMID:24455685
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Natural resource theory of unitary taxation
DOE Office of Scientific and Technical Information (OSTI.GOV)
Johnston, J.L.; Reynolds, A.
1985-01-01
Empirical evidence supports the tentative hypothesis that unitary taxation encourages natural resource recovery in states well endowed with timber, fuels, and nonfuel minerals. Consequently, if combined apportionment is a stable institution in any state, it will remain so while extractive industries, with higher upstream than downstream profitability, continue to dominate the state's economy. Over time, however, nonproducing states will abandon unitary taxation to prevent integrated firms from disinvesting within their borders and expanding operations in states with a hospitable investment climate. Since states, like firms, must compete with one another, unitary taxation will become less important as state economies becomemore » less dependent on the recovery of natural resources. 43 references, 1 figure, 4 tables.« less
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NASA Astrophysics Data System (ADS)
Žic, E.; Arbanas, Ž.; Bićanić, N.; Ožanić, N.
2015-02-01
Mudflows regularly generate significant human and property losses. Analyzing mudflows is important to assess the risks and to delimit vulnerable areas where mitigation measures are required. The smoothed-particle hydrodynamics (SPH) model adopted here considers, in two phases, a granular skeleton with voids filled with either water or mud. The SPH depth-integrated numerical model (Pastor et al., 2009a) used for the present simulations is a 2-D model capable of predicting the runout distance, flow velocity, deposition pattern and the final volume of mudflows. It is based on mathematical and rheological models. In this study, the main characteristics of mudflow processes that have emerged in the past (1908) in the area downstream of the Grohovo landslide are examined, and the more relevant parameters and attributes describing the mudflow are presented. Principal equations that form the basis of the SPH depth-integrated model are reviewed and applied to analyze the Grohovo landslide and the propagation of the mudflow wave downstream of the landslide. Based on the SPH method, the runout distance, quantities of the deposited materials and the velocity of mudflow progression which occurred in the past at the observed area are analyzed and qualitatively compared to the recorded consequences of the actual event. Within the SPH simulation, the Newtonian rheological model in the turbulent flow regime and the Bingham rheological model were adopted and a comparison was made of the application of the Egashira and Hungr erosion law.
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NASA Astrophysics Data System (ADS)
Uchida, Taro; Sakurai, Wataru; Iuchi, Takuma; Izumiyama, Hiroaki; Borgatti, Lisa; Marcato, Gianluca; Pasuto, Alessandro
2018-04-01
Monitoring of sediment transport from hillslopes to channel networks as a consequence of floods with suspended and bedload transport, hyperconcentrated flows, debris and mud flows is essential not only for scientific issues, but also for prevention and mitigation of natural disasters, i.e. for hazard assessment, land use planning and design of torrent control interventions. In steep, potentially unstable terrains, ground-based continuous monitoring of hillslope and hydrological processes is still highly localized and expensive, especially in terms of manpower. In recent years, new seismic and acoustic methods have been developed for continuous bedload monitoring in mountain rivers. Since downstream bedload transport rate is controlled by upstream sediment supply from tributary channels and bed-external sources, continuous bedload monitoring might be an effective tool for detecting the sediments mobilized by debris flow processes in the upper catchment and thus represent an indirect method to monitor slope instability processes at the catchment scale. However, there is poor information about the effects of episodic sediment supply from upstream bed-external sources on downstream bedload transport rate at a single flood time scale. We have examined the effects of sediment supply due to upstream debris flow events on downstream bedload transport rate along the Yotagiri River, central Japan. To do this, we have conducted continuous bedload observations using a hydrophone (Japanese pipe microphone) located 6.4 km downstream the lower end of a tributary affected by debris flows. Two debris flows occurred during the two-years-long observation period. As expected, bedload transport rate for a given flow depth showed to be larger after storms triggering debris flows. That is, although the magnitude of sediment supply from debris flows is not large, their effect on bedload is propagating >6 km downstream at a single flood time scale. This indicates that continuous bedload observations could be effective for detecting sediment supply as a consequence of debris flow events.
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Ran, Xin-Li; Zhang, Min; Wang, Yuchuan; Adhikari, Benu
2017-09-18
Plant byproducts of food processing industry line are undervalued yet important resource. These byproducts contain large percentage of high value functional substances such as antioxidants, pectin, polyphenols and so on. Recently, many research studies concentrated on innovative technologies that promise to overcome such issues as time consuming, inefficiency, and low yield, among others, which exist in most conventional techniques. Consequently, to achieve the recovery of nutraceuticals from high added-value by-products, it is necessary to have more knowledge of these novel technologies and more importantly explore the possibility of application of these latest technologies to the recovery downstream processing. The present work will summarize state-of-the-art technological approaches concerning extraction, superfine and drying applied to plant food processing residues. Simultaneously, the application of the bioactive components originated from byproducts in food industry will also be reviewed.
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Effects of Buoyancy on the Flowfields of Lean Premixed Turbulent V-Flames
NASA Technical Reports Server (NTRS)
Cheng, R. K.; Greenberg, P.; Bedat, B.; Yegian, D. T.
1999-01-01
Open laboratory turbulent flames used for investigating fundament flame turbulence interactions are greatly affected by buoyancy. Though much of our current knowledge is based on observations made in these open flames, the effects of buoyancy are usually not included in data interpretation, numerical analysis or theories. This inconsistency remains an obstacle to merging experimental observations and theoretical predictions. To better understanding the effects of buoyancy, our research focuses on steady lean premixed flames propagating in fully developed turbulence. We hypothesize that the most significant role of buoyancy forces on these flames is to influence their flowfields through a coupling with mean and fluctuating pressure fields. Changes in flow pattern alter the mean aerodynamic stretch and in turn affect turbulence fluctuation intensities both upstream and downstream of the flame zone. Consequently, flame stabilization, reaction rates, and turbulent flame processes are all affected. This coupling relates to the elliptical problem that emphasizes the importance of the upstream, wall and downstream boundary conditions in determining all aspects of flame propagation. Therefore, buoyancy has the same significance as other parameters such as flow configuration, flame geometry, means of flame stabilization, flame shape, enclosure size, mixture conditions, and flow conditions.
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Parvez, Saba; Fu, Yuan; Li, Jiayang; Long, Marcus J C; Lin, Hong-Yu; Lee, Dustin K; Hu, Gene S; Aye, Yimon
2015-01-14
Lipid-derived electrophiles (LDEs) that can directly modify proteins have emerged as important small-molecule cues in cellular decision-making. However, because these diffusible LDEs can modify many targets [e.g., >700 cysteines are modified by the well-known LDE 4-hydroxynonenal (HNE)], establishing the functional consequences of LDE modification on individual targets remains devilishly difficult. Whether LDE modifications on a single protein are biologically sufficient to activate discrete redox signaling response downstream also remains untested. Herein, using T-REX (targetable reactive electrophiles and oxidants), an approach aimed at selectively flipping a single redox switch in cells at a precise time, we show that a modest level (∼34%) of HNEylation on a single target is sufficient to elicit the pharmaceutically important antioxidant response element (ARE) activation, and the resultant strength of ARE induction recapitulates that observed from whole-cell electrophilic perturbation. These data provide the first evidence that single-target LDE modifications are important individual events in mammalian physiology.
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Does a Culture of Happiness Increase Rumination Over Failure?
McGuirk, Lucy; Kuppens, Peter; Kingston, Rosemary; Bastian, Brock
2017-07-17
Promoting happiness within society is good for health, but could the overpromotion of happiness have a downside? Across 2 studies, we investigate 2 emotion norms associated with an emphasis on happiness-the importance of (a) seeking positive emotion, and (b) avoiding negative emotion-and whether these norms have implications for how people respond to, and seek to regulate, their negative emotional experiences. In Study 1, we used an experimental design to show that emphasizing the importance of happiness increased rumination in response to failure. In Study 2, we drew on cross-sectional evidence to investigate the other side of this equation, finding that emphasizing the importance of not experiencing negative emotional states (e.g., depression and anxiety) was also associated with increased rumination, and that this had downstream consequences for well-being. Together, the findings suggest that the overpromotion of happiness, and, in turn, the felt social pressure not to experience negative emotional states, has implications for maladaptive responses to negative emotional experiences. (PsycINFO Database Record (c) 2017 APA, all rights reserved).
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Internal flows and force matrices in axial flow inducers
NASA Astrophysics Data System (ADS)
Bhattacharyya, Abhijit
1994-01-01
Axial flow inducers such as those used in high speed rocket engine turbopumps are subject to complex internal flows and fluid-induced lateral and rotordynamic forces. An investigation of these internal flows was conducted using boundary layer flow visualization on the blades, hub and housing of unshrouded and shrouded inducers. Results showed that the blade boundary layer flows have strong radial components at off-design conditions and remain attached to the blade surface at all flow coefficients tested. The origin of upstream swirling backflow was found to be at the discharge plane of the inducer. In addition, flow reversal was observed at the suction side blade tip near the leading edge in a shrouded inducer. Re-entry of the hub boundary layer flow, a downstream backflow, into the blade passage area was observed at flow coefficients below design. For unshrouded inducers the radially outward flow near the blade tip mixed with the leakage flow to form the upstream backflow. The lateral and rotordynamic forces acting on an inducer due to an imposed whirl motion was also investigated at various flow coefficients. It was found that the rotordynamic force data at various whirl frequency ratios does not allow a normal quadratic fit; consequently the conventional inertial, stiffness and damping coefficients cannot be obtained and a definite whirl ratio describing the instability region does not result. Application of an actuator disk theory proved to be inaccurate in estimating the rotordynamic tangential force in a non-whirling inducer. The effect of upstream and downstream flow distortions on the rotordynamic and lateral forces on an inducer were studied. It was found that at flow coefficients below design, large lateral forces occurred in the presence of a downstream asymmetry. Results of inlet distortion experiments show that a strong inlet shear causes a significant increase in the lateral force. Cavitation was found to have important consequences for fluid-induced rotordynamic forces. These forces become destabilizing for both forward and reverse whirl. Decreasing cavitation numbers caused an increase in the magnitudes of the destabilizing forces.
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More Than Meets the Eye: Split-Second Social Perception
Freeman, Jonathan B.; Johnson, Kerri L.
2017-01-01
Recent research suggests that visual perception of social categories is shaped not only by facial features but also by higher-order social cognitive processes (e.g., stereotypes, attitudes, goals). Building on neural computational models of social perception, we outline a perspective of how multiple bottom-up visual cues are flexibly integrated with a range of top-down processes to form perceptions, and we identify a set of key brain regions involved. During this integration, ‘hidden’ social category activations are often triggered which temporarily impact perception without manifesting in explicit perceptual judgments. Importantly, these hidden impacts and other aspects of the perceptual process predict downstream social consequences – from politicians’ electoral success to several evaluative biases – independently of the outcomes of that process. PMID:27050834
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Kinzel, Paul J.; Nelson, Jonathan M.; Heckman, Ashley K.
2006-01-01
Riparian areas along a reach of Platte River passing through Nebraska Public Power District's Cottonwood Ranch Property were modified during 2002 to 2004 to enhance in-channel habitats for endangered and threatened avian species. A component of this alteration involved the removal of riparian vegetation from riverbanks and islands to provide roosting habitat for the endangered whooping crane and to provide nesting and foraging habitat for the endangered least tern and threatened piping plover. It was hypothesized that the removal of riparian vegetation could have the effect of stimulating channel widening in this reach by increasing the potential of these surfaces to erode under natural fluvial action. It also was hypothesized that as a direct or indirect consequence of the alterations, a local increase in sediment supply also might occur, potentially resulting in geomorphic change downstream and possibly initiating negative third-party effects. The cumulative effects of the management activities on the channel morphology and sediment transport in this reach were monitored during water years 2001-2004 by measuring transect elevation profiles and bed-sediment-size gradations upstream, within, and downstream from the managed area before and after the development activities. An analysis of variance (ANOVA) was performed to determine if the geomorphic variables measured before and after the development activities were significantly different. Although statistically significant differences were detected in some of the variables, increases in mean bed elevation did not occur in a greater percentage of the monitoring sections measured downstream compared to upstream from the management activities. This result suggests that the management activities did not have a substantial effect on the downstream river channel morphology and sediment transport. However, it is important to place these short-term and site-specific results in the context that river flows following the management activities were at historical low rates, and therefore the potential to affect and the opportunity to detect possible geomorphic change within and downstream from the managed reach were limited.
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Research to inform policy on headwater streams: ongoing and future directions
Headwater streams are the exterior links of stream networks and represent a substantial proportion of U.S. stream miles. Alteration and loss of headwater streams have occurred without an understanding of the potential consequences to larger downstream waterbodies. Recent court ca...
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Isbell, Linda M; Lair, Elicia C; Rovenpor, Daniel R
2016-04-01
Two studies tested the affect-as-cognitive-feedback model, in which positive and negative affective states are not uniquely associated with particular processing styles, but rather serve as feedback about currently accessible processing styles. The studies extend existing work by investigating (a) both incidental and integral affect, (b) out-group judgments, and (c) downstream consequences. We manipulated processing styles and either incidental (Study 1) or integral (Study 2) affect and measured perceptions of out-group homogeneity. Positive (relative to negative) affect increased out-group homogeneity judgments when global processing was primed, but under local priming, the effect reversed (Studies 1 and 2). A similar interactive effect emerged on attributions, which had downstream consequences for behavioral intentions (Study 2). These results demonstrate that both incidental and integral affect do not directly produce specific processing styles, but rather influence thinking by providing feedback about currently accessible processing styles. © 2016 by the Society for Personality and Social Psychology, Inc.
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Scoppettone, G. Gary; Rissler, Peter H.; Salgado, J. Antonio; Harry, Beverly
2013-01-01
We compared cui-ui (Chasmistes cujus) recruitment from two reaches of the Truckee River with histories of severe erosional downcutting caused by a decline in Pyramid Lake surface elevation. In 1975, Marble Bluff Dam (MBD) was constructed 5 kilometers upstream of the extant mouth of the Truckee River to stabilize the upstream reach of the river; the downstream reach of the river remained unstable and consequently unsuitable for cui-ui recruitment. By the early 2000s, there was a decrease in the Truckee River’s slope from MBD to Pyramid Lake after a series of wet years in the 1990s. This was followed by changes in river morphology and erosion abatement. These changes led to the question as to cui-ui recruitment potential in the Truckee River downstream of MBD. In 2012, more than 7,000 cui-ui spawners were passed upstream of MBD, although an indeterminate number of cui-ui spawned downstream of MBD. In this study, we compared cui-ui recruitment upstream and downstream of MBD during a Truckee River low-flow year (2012). Cui-ui larvae emigration to Pyramid Lake began earlier and ended later downstream of MBD. A greater number of cui-ui larvae was produced downstream of MBD than upstream. This also was true for native Tahoe sucker (Catostomus tahoensis) and Lahontan redside (Richardsonius egregius). The improved Truckee River stability downstream of MBD and concomitant cui-ui recruitment success is attributed to a rise in Pyramid Lake's surface elevation. A decline in lake elevation may lead to a shift in stream morphology and substrate composition to the detriment of cui-ui reproductive success as well as the reproductive success of other native fishes.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Baumgartner, Lee J.; Daniel Deng, Z.; Thorncraft, Garry
2014-01-01
Tropical rivers have high annual discharges optimal for hydropower and irrigation development. The Mekong River is one of the largest tropical river systems, supporting a unique mega-diverse fish community. Fish are an important commodity in the Mekong, contributing a large proportion of calcium, protein, and essential nutrients to the diet of the local people and providing a critical source of income for rural households. Many of these fish migrate not only upstream and downstream within main-channel habitats but also laterally into highly productive floodplain habitat to both feed and spawn. Most work to date has focused on providing for upstreammore » fish passage, but downstream movement is an equally important process to protect. Expansion of hydropower and irrigation weirs can disrupt downstream migrations and it is important to ensure that passage through regulators or mini hydro systems is not harmful or fatal. Many new infrastructure projects (<6 m head) are proposed for the thousands of tributary streams throughout the Lower Mekong Basin and it is important that designs incorporate the best available science to protect downstream migrants. Recent advances in technology have provided new techniques which could be applied to Mekong fish species to obtain design criteria that can facilitate safe downstream passage. Obtaining and applying this knowledge to new infrastructure projects is essential in order to produce outcomes that are more favorable to local ecosystems and fisheries.« less
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The effect of sex on the repeatability of evolution in different environments.
Lachapelle, Josianne; Colegrave, Nick
2017-04-01
The adaptive function of sex has been extensively studied, while less consideration has been given to the potential downstream consequences of sex on evolution. Here, we investigate one such potential consequence, the effect of sex on the repeatability of evolution. By affecting the repeatability of evolution, sex could have important implications for biodiversity, and for our ability to make predictions about the outcome of environmental change. We allowed asexual and sexual populations of Chlamydomonas reinhardtii to evolve in novel environments and monitored both their change in fitness and variance in fitness after evolution. Sex affected the repeatability of evolution by changing the importance of the effect of selection, chance, and ancestral constraints on the outcome of the evolutionary process. In particular, the effects of sex were highly dependent on the initial genetic composition of the population and on the environment. Given the lack of a consistent effect of sex on repeatability across the environments used here, further studies to dissect in more detail the underlying reasons for these differences as well as studies in additional environments are required if we are to have a general understanding of the effects of sex on the repeatability of evolution. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.
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Tanouchi, Yu; Covert, Markus W
2017-09-19
During its lysogenic life cycle, the phage genome is integrated into the host chromosome by site-specific recombination. In this report, we analyze lambda phage integration into noncanonical sites using next-generation sequencing and show that it generates significant genetic diversity by targeting over 300 unique sites in the host Escherichia coli genome. Moreover, these integration events can have important phenotypic consequences for the host, including changes in cell motility and increased antibiotic resistance. Importantly, the new technologies that we developed to enable this study-sequencing secondary sites using next-generation sequencing and then selecting relevant lysogens using clustered regularly interspaced short palindromic repeat (CRISPR)/Cas9-based selection-are broadly applicable to other phage-bacterium systems. IMPORTANCE Bacteriophages play an important role in bacterial evolution through lysogeny, where the phage genome is integrated into the host chromosome. While phage integration generally occurs at a specific site in the host chromosome, it is also known to occur at other, so-called secondary sites. In this study, we developed a new experimental technology to comprehensively study secondary integration sites and discovered that phage can integrate into over 300 unique sites in the host genome, resulting in significant genetic diversity in bacteria. We further developed an assay to examine the phenotypic consequence of such diverse integration events and found that phage integration can cause changes in evolutionarily relevant traits such as bacterial motility and increases in antibiotic resistance. Importantly, our method is readily applicable to other phage-bacterium systems. Copyright © 2017 Tanouchi and Covert.
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Diffusive Shock Acceleration and Reconnection Acceleration Processes
NASA Astrophysics Data System (ADS)
Zank, G. P.; Hunana, P.; Mostafavi, P.; Le Roux, J. A.; Li, Gang; Webb, G. M.; Khabarova, O.; Cummings, A.; Stone, E.; Decker, R.
2015-12-01
Shock waves, as shown by simulations and observations, can generate high levels of downstream vortical turbulence, including magnetic islands. We consider a combination of diffusive shock acceleration (DSA) and downstream magnetic-island-reconnection-related processes as an energization mechanism for charged particles. Observations of electron and ion distributions downstream of interplanetary shocks and the heliospheric termination shock (HTS) are frequently inconsistent with the predictions of classical DSA. We utilize a recently developed transport theory for charged particles propagating diffusively in a turbulent region filled with contracting and reconnecting plasmoids and small-scale current sheets. Particle energization associated with the anti-reconnection electric field, a consequence of magnetic island merging, and magnetic island contraction, are considered. For the former only, we find that (i) the spectrum is a hard power law in particle speed, and (ii) the downstream solution is constant. For downstream plasmoid contraction only, (i) the accelerated spectrum is a hard power law in particle speed; (ii) the particle intensity for a given energy peaks downstream of the shock, and the distance to the peak location increases with increasing particle energy, and (iii) the particle intensity amplification for a particular particle energy, f(x,c/{c}0)/f(0,c/{c}0), is not 1, as predicted by DSA, but increases with increasing particle energy. The general solution combines both the reconnection-induced electric field and plasmoid contraction. The observed energetic particle intensity profile observed by Voyager 2 downstream of the HTS appears to support a particle acceleration mechanism that combines both DSA and magnetic-island-reconnection-related processes.
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How river rocks round: resolving the shape-size paradox.
Domokos, Gabor; Jerolmack, Douglas J; Sipos, Andras Á; Török, Akos
2014-01-01
River-bed sediments display two universal downstream trends: fining, in which particle size decreases; and rounding, where pebble shapes evolve toward ellipsoids. Rounding is known to result from transport-induced abrasion; however many researchers argue that the contribution of abrasion to downstream fining is negligible. This presents a paradox: downstream shape change indicates substantial abrasion, while size change apparently rules it out. Here we use laboratory experiments and numerical modeling to show quantitatively that pebble abrasion is a curvature-driven flow problem. As a consequence, abrasion occurs in two well-separated phases: first, pebble edges rapidly round without any change in axis dimensions until the shape becomes entirely convex; and second, axis dimensions are then slowly reduced while the particle remains convex. Explicit study of pebble shape evolution helps resolve the shape-size paradox by reconciling discrepancies between laboratory and field studies, and enhances our ability to decipher the transport history of a river rock.
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How River Rocks Round: Resolving the Shape-Size Paradox
Domokos, Gabor; Jerolmack, Douglas J.; Sipos, Andras Á.; Török, Ákos
2014-01-01
River-bed sediments display two universal downstream trends: fining, in which particle size decreases; and rounding, where pebble shapes evolve toward ellipsoids. Rounding is known to result from transport-induced abrasion; however many researchers argue that the contribution of abrasion to downstream fining is negligible. This presents a paradox: downstream shape change indicates substantial abrasion, while size change apparently rules it out. Here we use laboratory experiments and numerical modeling to show quantitatively that pebble abrasion is a curvature-driven flow problem. As a consequence, abrasion occurs in two well-separated phases: first, pebble edges rapidly round without any change in axis dimensions until the shape becomes entirely convex; and second, axis dimensions are then slowly reduced while the particle remains convex. Explicit study of pebble shape evolution helps resolve the shape-size paradox by reconciling discrepancies between laboratory and field studies, and enhances our ability to decipher the transport history of a river rock. PMID:24533132
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NASA Astrophysics Data System (ADS)
Žic, E.; Arbanas, Ž.; Bićanić, N.; Ožanić, N.
2014-11-01
Mudflows regularly generate significant human and property losses. Analyzing mudflows is important to assess the risks and to delimit vulnerable areas where mitigation measures are required. In recent decades, modeling of the propagation stage has been largely performed within the framework of continuum mechanics, and a number of new and sophisticated computational models have been developed. Most of the available approaches treat the heterogeneous and multiphase moving mass as a single-phase continuum. The smoothed particle hydrodynamics model (SPH model) adopted here considers, in two phases, a granular skeleton with voids filled with either water or mud. The SPH depth integrated numerical model (Pastor et al., 2009a) used for the present simulations is a 2-D model capable of predicting the runout distance, flow velocity, deposition pattern and the final volume of mudflows. It is based on mathematical and rheological models. In this study, the main characteristics of mudflow processes that have emerged in the past in the area downstream of the Grohovo landslide are examined, and the more relevant parameters and attributes describing the mudflow are presented. Principal equations that form the basis of the SPH depth integrated model are reviewed and applied to analyze the Grohovo landslide and the propagation of the mudflow wave downstream of the landslide. Based on the SPH method, the runout distance, quantities of the deposited materials and the velocity of mudflow progression which occurred in the past at the observed area are analysed and qualitatively compared to the recorded consequences of the actual event.
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Tornés, E; Pérez, M C; Durán, C; Sabater, S
2014-03-15
Water hydrology, temperature and transparency, as well as nutrient retention downstream of the reservoirs alter the temporal and spatial distribution patterns of phytoplankton communities in regulated rivers. The seasonal dynamics of phytoplankton communities in the Ebro was analysed in contrasting water flow periods in sections upstream and downstream of three large reservoirs, as well as in an intermediate site. Phytoplankton communities changed in response to seasonal variations in the areas not influenced by the reservoirs, but the phytoplankton distribution downstream of the reservoirs was driven by their particular hydrodynamics. The change in environmental conditions promoted by reservoirs influenced the pattern of replacement between diatoms and green algae of the upstream section. Differences in the phytoplankton community structure, abundance and environmental variables between upstream and downstream sites were maximal during low flow periods. Chlorophytes and dinoflagellates were present during low flow periods upstream of the reservoirs and in the intermediate site. Cocconeis cf. placentula characterized the downstream section, associated to the presence of macrophytes in that section. The present study sheds light on the consequences of river regulation under potential scenarios of climate change, and results could be used to anticipate ecological problems in large regulated rivers under these circumstances. Copyright © 2013 Elsevier B.V. All rights reserved.
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NASA Astrophysics Data System (ADS)
Takase, Kazuki; Takahashi, Kazunori; Takao, Yoshinori
2018-02-01
The effects of neutral distribution and an external magnetic field on plasma distribution and thruster performance are numerically investigated using a particle-in-cell simulation with Monte Carlo collisions (PIC-MCC) and the direct simulation Monte Carlo (DSMC) method. The modeled thruster consists of a quartz tube 1 cm in diameter and 3 cm in length, where a double-turn rf loop antenna is wound at the center of the tube and a solenoid is placed between the loop antenna and the downstream tube exit. A xenon propellant is introduced from both the upstream and downstream sides of the thruster, and the flow rates are varied while maintaining the total gas flow rate of 30 μg/s. The PIC-MCC calculations have been conducted using the neutral distribution obtained from the DSMC calculations, which were applied with different strengths of the magnetic field. The numerical results show that both the downstream gas injection and the external magnetic field with a maximum strength near the thruster exit lead to a shift of the plasma density peak from the upstream to the downstream side. Consequently, a larger total thrust is obtained when increasing the downstream gas injection and the magnetic field strength, which qualitatively agrees with a previous experiment using a helicon plasma source.
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Nutrient cycling is a key process that ties all organisms together. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of...
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Dams and Rivers: A Primer on the Downstream Effects of Dams
Collier, Michael; Webb, Robert H.; Schmidt, John C.
1996-01-01
The U.S. Geological Survey is charged with monitoring the water and mineral resources of the United States. Beginning in 1889, the Survey established a network of water gaging stations across most of the country's rivers; some also measured sediment content of the water. Consequently, we now have valuable long-term data with which to track water supply, sediment transport, and the occurrence of floods. Many variables affect the flow of water from mountain brook to river delta. Some are short-term perturbations like summer thunderstorms. Others occur over a longer period of time, like the El Ninos that might be separated by a decade or more. We think of these variables as natural occurrences, but humans have exerted some of the most important changes -- water withdrawals for agriculture, inter-basin transfers, and especially the construction of an extensive system of dams. Dams have altered the flow of many of the Nation's rivers to meet societal needs. We expect floods to be contained. Irrigation is possible where deserts once existed. And water is released downstream not according to natural cycles but as dictated by a region's hour-by-hour needs for water or electricity. As a result, river channels below dams have changed dramatically. Depending on annual flow, flood peaks, and a river's sediment load, we might see changes such as sand building up in one channel, vegetation crowding into another, and extensive bank erosion in another. This Circular explores the emerging scientific arena of change in rivers below dams. This science tries first to understand and then anticipate changes to river beds and banks, and to riparian habitats and animal communities. To some degree, these downstream changes can be influenced by specific strategies of dam management. Scientists and resource managers have a duty to assemble this information and present it without bias to the rest of society. Society can then more intelligently choose a balance between the benefits and adverse downstream effects of dams.
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Movement of reservoir-stocked riverine fish between tailwaters and rivers
Spoelstra, J.A.; Stein, R.A.; Royle, J. Andrew; Marschall, E.A.
2008-01-01
The movement of fish from onstream impoundments into connected streams and rivers has traditionally been overlooked in fish stocking decisions but is critical to the ultimate impact of stocking riverine species into reservoirs. Hybrid saugeyes (female walleye Sander vitreus x male sauger S. canadensis) stocked into Deer Creek Reservoir, Ohio, readily move from the reservoir to the tailwater below. Downstream movement of these saugeyes from the tailwater may have consequences for native prey species and parental stocks downstream. We used fixed-station radiotelemetry to quantify the temporal movement patterns of 203 reservoir-stocked saugeyes from the tailwater of the reservoir, the stream flowing from the tailwater, and the river into which the stream flowed. From October 1998 through July 2000, most (75%) saugeyes never left the tailwater, and those that left returned 75% of the time. Overall, saugeyes spent 90% of their time in the tailwater, 7-8% of their time downstream in small streams, and 2-3% of their time farther downstream in the Scioto River (45 km downstream). No radio-tagged saugeyes moved to the Ohio River (155 km downstream). The probability of downstream movement generally increased with increasing flow and when dissolved oxygen dropped to lethal levels in summer. The probability of movement was highest in winter and spring, when it was probably related to spawning, and low in summer (except when dissolved oxygen was low) and fall. The patterns of movement seemed to reflect the relative suitability of tailwater over stream habitat. The predominant use of and return to tailwater habitat after downstream movement limited overall stream and river residence time. Although the daily movement probability for an individual was low, when we apply these rates to all of the stocked saugeyes in the Ohio River drainage, we cannot safely conclude that only small numbers move from reservoir tailwaters to downstream river systems. We recommend that managers refrain from stocking systems for which there are concerns about native species in connected drainages.
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Grammatical Difficulties in Children with Specific Language Impairment: Is Learning Deficient?
ERIC Educational Resources Information Center
Hsu, Hsinjen Julie; Bishop, Dorothy V. M.
2010-01-01
Theoretical accounts of grammatical limitations in specific language impairment (SLI) have been polarized between those that postulate problems with domain-specific grammatical knowledge, and those that regard grammatical deficits as downstream consequences of perceptual or memory limitations. Here we consider an alternative view that grammatical…
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NASA Astrophysics Data System (ADS)
Milzow, Christian; Bauer-Gottwein, Peter
2010-05-01
The competition between human water use and ecosystem water use is one of the major challenges for water resources management at the global scale. We analyse the situation for the Okavango River basin of southern Africa. The Okavango River is representative for many large rivers throughout the developing world in that it is ungauged and poorly studied. The Okavango basin - spanning over Angola, Namibia and Botswana - represents a multi-objective problem in an international setting. Economic benefits of agricultural development and conservation of ecosystem services call for opposed actions. A semi-distributed rainfall-runoff model of the Okavango catchment is set up using the Soil and Water Assessment Tool (SWAT). The model is sufficiently physically based to simulate the impact on runoff of extent of agricultural use, crop types and management practices. Precipitation and temperature inputs are taken from datasets covering large parts of the globe. The methodology can thus easily be applied for other ungauged catchments. For temperature we use the ERA-Interim reanalysis product of the European Centre for Medium-Range Weather Forecasts and for precipitation the Famine Early Warning Systems Network data (FEWS-Net). Tropical Rainfall Measurement Mission (TRMM) data resulted in poor model performance compared to the FEWS-Net data. Presently, the upstream catchment in Angola is largely pristine and agriculture is basically restricted to dry land subsistence farming. But economic growth in Angola is likely to result in agricultural development and consequent impacts on catchment runoff. Land use scenarios that are simulated include large scale irrigated agriculture with water extractions from the river and the shallow aquifer. Climate change impacts are also studied and compared to land use change impacts. The downstream part of the basin consists of the large Okavango Wetlands, which are a biodiversity hotspot of global importance and, through tourism, an important source of economic income for Botswana. A second hydrological model simulating flow through the wetlands is used to study the impact of catchment runoff changes on the hydrology and ecology of the wetlands. The final goal of the project is to demonstrate the relation between economic benefits of water abstractions in the upstream and downstream environmental impact. Furthermore the results will provide a basis for defining adequate compensations for upstream stakeholders who forego benefits of agricultural intensification to ensure the conservation of downstream ecosystem services.
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The significance of small streams
NASA Astrophysics Data System (ADS)
Wohl, Ellen
2017-09-01
Headwaters, defined here as first- and secondorder streams, make up 70%‒80% of the total channel length of river networks. These small streams exert a critical influence on downstream portions of the river network by: retaining or transmitting sediment and nutrients; providing habitat and refuge for diverse aquatic and riparian organisms; creating migration corridors; and governing connectivity at the watershed-scale. The upstream-most extent of the channel network and the longitudinal continuity and lateral extent of headwaters can be difficult to delineate, however, and people are less likely to recognize the importance of headwaters relative to other portions of a river network. Consequently, headwaters commonly lack the legal protections accorded to other portions of a river network and are more likely to be significantly altered or completely obliterated by land use.
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More Than Meets the Eye: Split-Second Social Perception.
Freeman, Jonathan B; Johnson, Kerri L
2016-05-01
Recent research suggests that visual perception of social categories is shaped not only by facial features but also by higher-order social cognitive processes (e.g., stereotypes, attitudes, goals). Building on neural computational models of social perception, we outline a perspective of how multiple bottom-up visual cues are flexibly integrated with a range of top-down processes to form perceptions, and we identify a set of key brain regions involved. During this integration, 'hidden' social category activations are often triggered which temporarily impact perception without manifesting in explicit perceptual judgments. Importantly, these hidden impacts and other aspects of the perceptual process predict downstream social consequences - from politicians' electoral success to several evaluative biases - independently of the outcomes of that process. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Benito-Sanz, Sara; del Blanco, Darya Gorbenko; Aza-Carmona, Miriam; Magano, Luis F; Lapunzina, Pablo; Argente, Jesús; Campos-Barros, Angel; Heath, Karen E
2006-10-01
Léri-Weill dyschondrosteosis (LWD) is a skeletal dysplasia characterized by disproportionate short stature and Madelung deformity. Mutations or deletions of the SHOX gene have been previously identified as the main cause of LWD. We recently identified the existence of a second class of pseudoautosomal region 1 (PAR1) deletions which do not include SHOX, implicated in the etiopathogenesis of LWD. The deletions map at least 30-250 kb downstream of SHOX, are variable in size and clearly cosegregate with the LWD phenotype. In order to determine the frequency of this new type of deletions in the Spanish population we analyzed the distribution of PAR1 defects, including the screening of SHOX deletions, mutations, and PAR1 deletions downstream of SHOX, in a total of 26 LWD probands by a combination of MLPA, microsatellite analysis, SNP genotyping, dHPLC, and DNA sequencing. A molecular defect was identified in 16/26 LWD patients (61.5%): 10 PAR1 deletions downstream of SHOX, four SHOX encompassing deletions, and two SHOX mutations. No apparent phenotypic differences were observed between patients with SHOX defects and those with PAR1 deletions downstream of SHOX. In the examined cohort of Spanish LWD probands, PAR1 deletions downstream of SHOX represent the highest proportion of identified mutations (38%) compared to SHOX deletions (15%) and mutations (8%). As a consequence of our findings, the screening of this region should be included in the routine genetic testing of LWD. Also, LWD patients who tested negative for SHOX defects should be re-evaluated for PAR1 deletions downstream of SHOX.
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Erosional Consequence of Saltcedar Control
NASA Astrophysics Data System (ADS)
Vincent, Kirk R.; Friedman, Jonathan M.; Griffin, Eleanor R.
2009-08-01
Removal of nonnative riparian trees is accelerating to conserve water and improve habitat for native species. Widespread control of dominant species, however, can lead to unintended erosion. Helicopter herbicide application in 2003 along a 12-km reach of the Rio Puerco, New Mexico, eliminated the target invasive species saltcedar ( Tamarix spp.), which dominated the floodplain, as well as the native species sandbar willow ( Salix exigua Nuttall), which occurred as a fringe along the channel. Herbicide application initiated a natural experiment testing the importance of riparian vegetation for bank stability along this data-rich river. A flood three years later eroded about 680,000 m3 of sediment, increasing mean channel width of the sprayed reach by 84%. Erosion upstream and downstream from the sprayed reach during this flood was inconsequential. Sand eroded from channel banks was transported an average of 5 km downstream and deposited on the floodplain and channel bed. Although vegetation was killed across the floodplain in the sprayed reach, erosion was almost entirely confined to the channel banks. The absence of dense, flexible woody stems on the banks reduced drag on the flow, leading to high shear stress at the toe of the banks, fluvial erosion, bank undercutting, and mass failure. The potential for increased erosion must be included in consideration of phreatophyte control projects.
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Erosional consequence of saltcedar control
Vincent, K.R.; Friedman, J.M.; Griffin, E.R.
2009-01-01
Removal of nonnative riparian trees is accelerating to conserve water and improve habitat for native species. Widespread control of dominant species, however, can lead to unintended erosion. Helicopter herbicide application in 2003 along a 12-km reach of the Rio Puerco, New Mexico, eliminated the target invasive species saltcedar (Tamarix spp.), which dominated the floodplain, as well as the native species sandbar willow (Salix exigua Nuttall), which occurred as a fringe along the channel. Herbicide application initiated a natural experiment testing the importance of riparian vegetation for bank stability along this data-rich river. A flood three years later eroded about 680,000 m3 of sediment, increasing mean channel width of the sprayed reach by 84%. Erosion upstream and downstream from the sprayed reach during this flood was inconsequential. Sand eroded from channel banks was transported an average of 5 km downstream and deposited on the floodplain and channel bed. Although vegetation was killed across the floodplain in the sprayed reach, erosion was almost entirely confined to the channel banks. The absence of dense, flexible woody stems on the banks reduced drag on the flow, leading to high shear stress at the toe of the banks, fluvial erosion, bank undercutting, and mass failure. The potential for increased erosion must be included in consideration of phreatophyte control projects. ?? 2009 U.S. Government.
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Walther, Cornelia; Kellner, Martin; Berkemeyer, Matthias; Brocard, Cécile; Dürauer, Astrid
2017-10-21
Escherichia coli stores large amounts of highly pure product within inclusion bodies (IBs). To take advantage of this beneficial feature, after cell disintegration, the first step to optimal product recovery is efficient IB preparation. This step is also important in evaluating upstream optimization and process development, due to the potential impact of bioprocessing conditions on product quality and on the nanoscale properties of IBs. Proper IB preparation is often neglected, due to laboratory-scale methods requiring large amounts of materials and labor. Miniaturization and parallelization can accelerate analyses of individual processing steps and provide a deeper understanding of up- and downstream processing interdependencies. Consequently, reproducible, predictive microscale methods are in demand. In the present study, we complemented a recently established high-throughput cell disruption method with a microscale method for preparing purified IBs. This preparation provided results comparable to laboratory-scale IB processing, regarding impurity depletion, and product loss. Furthermore, with this method, we performed a "design of experiments" study to demonstrate the influence of fermentation conditions on the performance of subsequent downstream steps and product quality. We showed that this approach provided a 300-fold reduction in material consumption for each fermentation condition and a 24-fold reduction in processing time for 24 samples.
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Selection of peptides interfering with protein-protein interaction.
Gaida, Annette; Hagemann, Urs B; Mattay, Dinah; Räuber, Christina; Müller, Kristian M; Arndt, Katja M
2009-01-01
Cell physiology depends on a fine-tuned network of protein-protein interactions, and misguided interactions are often associated with various diseases. Consequently, peptides, which are able to specifically interfere with such adventitious interactions, are of high interest for analytical as well as medical purposes. One of the most abundant protein interaction domains is the coiled-coil motif, and thus provides a premier target. Coiled coils, which consist of two or more alpha-helices wrapped around each other, have one of the simplest interaction interfaces, yet they are able to confer highly specific homo- and heterotypic interactions involved in virtually any cellular process. While there are several ways to generate interfering peptides, the combination of library design with a powerful selection system seems to be one of the most effective and promising approaches. This chapter guides through all steps of such a process, starting with library options and cloning, detailing suitable selection techniques and ending with purification for further down-stream characterization. Such generated peptides will function as versatile tools to interfere with the natural function of their targets thereby illuminating their down-stream signaling and, in general, promoting understanding of factors leading to specificity and stability in protein-protein interactions. Furthermore, peptides interfering with medically relevant proteins might become important diagnostics and therapeutics.
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Geomorphological and ecological effects of check dams in mountain torrents of Southern Italy
NASA Astrophysics Data System (ADS)
Zema, Demetrio Antonio; Bombino, Giuseppe; Denisi, Pietro; Tamburino, Vincenzo; Marcello Zimbone, Santo
2017-04-01
It is known that installation of check dams noticeably influences torrent morphology and ecology. However, the effects of check dams on channel section and riparian vegetation of torrents are not yet completely understood. This paper provides a further contribution to a better comprehension of the actions played by check dams on hydrological and geomorphological processes in headwaters and their effects on riparian ecosystem. Field surveys on channel morphology, bed material and riparian vegetation were carried out close to five check dams in each of four mountain reaches of Calabria (Southern Italy). For each check dam three transects (one upstream, one downstream and one far from the check dam, located in the undisturbed zone and adopted as control) were identified; at each transect, a set of geomorphological and ecological indicators were surveyed as follows. Channel section morphology was assessed by the width/depth ratio (w/d); the median particle size (D50) and the finer sediment fraction (%fines) were chosen to characterize channel bed material; the specific discharge (q, the discharge per channel unit width) was assumed as measure of the flow regime. Vegetation cover and structure were evaluated by Global Canopy Cover (GCC) and Weighted Canopy Height (WCH) respectively (Bombino et al., 2008); the index of alpha-diversity (H-alpha, Hill, 1973) and the ratio between the number of alien species and the number of native species (NSA/NSN) were chosen as indicators of species richness/abundance and degree of vegetation integrity, respectively. Compared to the control transects, the values of w/d were higher upstream of check dams and lower downstream; conversely, q was lower upstream and higher in downstream sites. Upstream of the check dams D50 of bed material was lower and %fines was higher compared to the control transects; vice versa, the downstream transects showed higher D50 and lower %fines. The differences in the riparian vegetation among transects were found as the torrent ecological response to the strong contrasts surveyed in hydrological (q) and geomorphological (w/d, D50 and %fines) characteristics. Compared to control transects, vegetation was more extensive (higher GCC) and developed (higher WCH) in the upstream zones; the reverse pattern was noticed in the downstream transects (lower GCC and WCH). The indexes H-alpha and NSA/NSN were higher upstream of check dams: the presence of the check dams induced higher species richness and evenness, with alien species prevailing over native ones in the sedimentation wedge. Conversely, downstream of check dams H-alpha and NSA/NSN were lower: here, riparian vegetation lost some herbaceous species and assumed a terrestrial character. Overall, this study confirms on a quantitative approach that check dams have far reaching effects on geomorphology and ecology of mountain torrent channels; as a consequence, important and complex changes occur not only in the extent and development of riparian vegetation, but also in the species diversity and distribution. REFERENCES - Bombino G., Gurnell A.M., Tamburino V., Zema D.A., Zimbone S.M. 2008. Sediment size variation in torrents with check-dams: effects on riparian vegetation. Ecological Engineering 32(2), 166-177. - Hill MO. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54: 427-431.
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NASA Astrophysics Data System (ADS)
Moellenkamp, S.
2007-06-01
The upstream-downstream relationship in international river basins is a traditional challenge in water management. Water use in upstream countries often has a negative impact on water use in downstream countries. This is most evident in the classical example of industrial pollution in upstream countries hindering drinking water production downstream. The European Water Framework Directive (WFD) gives new impetus to the river basin approach and to international co-operation in European catchments. It aims at transforming a mainly water quality oriented management into a more integrated approach of ecosystem management. After discussing the traditional upstream-downstream relationship, this article shows that the WFD has a balancing effect on upstream-downstream problems and that it enhances river basin solidarity in international basins. While it lifts the downstream countries to the same level as the upstream countries, it also leads to new duties for the downstream states. Following the ecosystem approach, measures taken by downstream countries become increasingly more important. For example, downstream countries need to take measures to allow for migrating fish species to reach upstream stretches of river systems. With the WFD, fish populations receive increased attention, as they are an important indicator for the ecological status. The European Commission acquires a new role of inspection and control in river basin management, which finally also leads to enhanced cooperation and solidarity among the states in a basin. In order to achieve better water quality and to mitigate upstream-downstream problems, also economic instruments can be applied and the WFD does not exclude the possibility of making use of financial compensations, if at the same time the polluter pays principle is taken into account. The results presented in this article originate from a broader study on integrated water resources management conducted at Bonn University and refer to the Rhine and Elbe basins (Moellenkamp, 2006).
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NASA Astrophysics Data System (ADS)
Anazadehsayed, A.; Barzegar Gerdroodbary, M.; Amini, Y.; Moradi, R.
2017-08-01
In this study, the influences of the micro air jet on the mixing of the sonic transverse hydrogen through micro-jets subjected to a supersonic crossflow are investigated. A three-dimensional numerical study has been performed to reveal the affects of micro air jet on mixing of the hydrogen jet in a Mach 4.0 crossflow with a global equivalence ratio of 0.5. Parametric studies were conducted on the various air jet conditions by using the Reynolds-averaged Navier-Stokes equations with Menter's Shear Stress Transport (SST) turbulence model. Complex jet interactions were found in the downstream region with a variety of flow features depending upon the angle of micro air jet. These flow features were found to have subtle effects on the mixing of hydrogen jets. Results indicate a different flow structure as air jet is presented in the downstream of the fuel jet. According to the results, without air, mixing occurs at a low rate. When the air jet is presented in the downstream of fuel jet, significant increase (up to 300%) occurs in the mixing performance of the hydrogen jet at downstream. In multi fuel jets, the mixing performance of the fuel jet is increased more than 200% when the micro air jet is injected. Consequently, an enhanced mixing zone occurs downstream of the injection slots which leads to flame-holding.
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Swerdlow, Russell H.
2012-01-01
Several sporadic neurodegenerative diseases display phenomena that directly or indirectly relate to mitochondrial function. Data suggesting altered mitochondrial function in these diseases could arise from mitochondrial DNA (mtDNA) are reviewed. Approaches for manipulating mitochondrial function and minimizing the downstream consequences of mitochondrial dysfunction are discussed. PMID:21902672
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Headwater streams represent the majority of U.S. stream miles. As a consequence of being abundant and widespread, the alteration and loss of headwater streams may have impacts on downstream waterbodies. These streams are frequently the subject of proposed dredge and fill projects...
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ERIC Educational Resources Information Center
Adelman, Robert Mark; Herrmann, Sarah D.; Bodford, Jessica E.; Barbour, Joseph E.; Graudejus, Oliver; Okun, Morris A.; Kwan, Virginia S. Y.
2017-01-01
This research examined the function of future self-continuity and its potential downstream consequences for academic performance through relations with other temporal psychological factors and self-control. We also addressed the influence of cultural factors by testing whether these relations differed by college generation status. Undergraduate…
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De Vleeschauwer, K; Weustenraad, J; Nolf, C; Wolfs, V; De Meulder, B; Shannon, K; Willems, P
2014-01-01
Urbanization and climate change trends put strong pressures on urban water systems. Temporal variations in rainfall, runoff and water availability increase, and need to be compensated for by innovative adaptation strategies. One of these is stormwater retention and infiltration in open and/or green spaces in the city (blue-green water integration). This study evaluated the efficiency of three adaptation strategies for the city of Turnhout in Belgium, namely source control as a result of blue-green water integration, retention basins located downstream of the stormwater sewers, and end-of-pipe solutions based on river flood control reservoirs. The efficiency of these options is quantified by the reduction in sewer and river flood frequencies and volumes, and sewer overflow volumes. This is done by means of long-term simulations (100-year rainfall simulations) using an integrated conceptual sewer-river model calibrated to full hydrodynamic sewer and river models. Results show that combining open, green zones in the city with stormwater retention and infiltration for only 1% of the total city runoff area would lead to a 30 to 50% reduction in sewer flood volumes for return periods in the range 10-100 years. This is due to the additional surface storage and infiltration and consequent reduction in urban runoff. However, the impact of this source control option on downstream river floods is limited. Stormwater retention downstream of the sewer system gives a strong reduction in peak discharges to the receiving river. However due to the difference in response time between the sewer and river systems, this does not lead to a strong reduction in river flood frequency. The paper shows the importance of improving the interface between urban design and water management, and between sewer and river flood management.
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Variability in response of lakes to climate change explained by surrounding watersheds
NASA Astrophysics Data System (ADS)
Råman Vinnå, Love; Wüest, Alfred; Bouffard, Damien
2017-04-01
The consequences of climate change for inland waters have been shown to vary extensively not only globally, but also on a sub-regional scale [O'Reilly et al., 2015, GRL]. Local factors affecting heating include morphology [Toffolon et al., 2014, LO], irradiance absorption [Williamson et al., 2015, SR], local weather conditions and onset of stratification [Zhong et al., 2016, LO] as well as ice conditions [Austin and Colman, 2007, GRL]. However, inland waters are often a complex web of rivers, streams, lakes and reservoirs. Thereby, to correctly assess and predict future changes in lakes/reservoirs due to climate change, it is important to consider the changes occurring in the surrounding watersheds and how they affect downstream waters. Here we evaluate the impact of climate change on rivers originating in the Swiss Alps (Aare and Rhône) and downstream located perialpine lakes (Lake Biel and Lake Geneva). We use regional predictions for air temperature increase and the subsequently expected shift in river discharge regime under the A1B emission scenario [Bey et al., 2011, CH2011; Federal Office for the Environment FOEN, 2012, CCHydro]. Focus is on predicting the changes in water temperature, particle content, stratification and deep water renewal rate using the 1D SIMSTRAT [Goudsmit et al., 2002, JGR] and Air2Stream [Toffolon and Piccolroaz, 2015, ERL] models. We show that the effect of tributaries on the reaction for downstream lakes to climate change are inversely proportional to the hydraulic residence time of the systems. We furthermore include known changes in anthropogenic thermal emissions, which in Lake Biel correspond to 2 decades of climate induced warming. Our results are put into context with future water utility plans in Lake Biel.
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NASA Astrophysics Data System (ADS)
Shim, Myungbo; Noh, Kwanyoung; Yoon, Woongsup
2018-06-01
In this study, the effects of gaseous methane/oxygen injection velocity ratio on the shear coaxial jet flame structure are analyzed using high-speed imaging along with OH* and CH* chemiluminescence. The images show that, as the velocity ratio is increased, the visual flame length increases and wrinkles of the flame front are developed further downstream. The region near the equivalence ratio 1 condition in the flame could be identified by the maximum OH* position, and this region is located further downstream as the velocity ratio is increased. The dominant CH* chemiluminescence is found in the near-injector region. As the velocity ratio is decreased, the signal intensity is higher at the same downstream distance in each flame. From the results, as the velocity ratio is decreased, there is increased entrainment of the external jet, the mixing of the two jets is enhanced, the region near the stoichiometric mixture condition is located further upstream, and consequently, the flame length decreases.
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Longitudinal distribution of Chironomidae (Diptera) downstream from a dam in a neotropical river.
Pinha, G D; Aviz, D; Lopes Filho, D R; Petsch, D K; Marchese, M R; Takeda, A M
2013-08-01
The damming of a river causes dangerous consequences on structure of the environment downstream of the dam, modifying the sediment composition, which impose major adjustments in longitudinal distribution of benthic community. The construction of Engenheiro Sérgio Motta Dam in the Upper Paraná River has caused impacts on the aquatic communities, which are not yet fully known. This work aimed to provide more information about the effects of this impoundment on the structure of Chironomidae larvae assemblage. The analysis of data of physical and chemical variables in relation to biological data of 8 longitudinal sections in the Upper Paraná River showed that composition of Chironomidae larvae of stations near Engenheiro Sérgio Motta Dam differed of the other stations (farther of the Dam). The predominance of coarse sediments at stations upstream and finer sediments further downstream affected the choice of habitat by different morphotypes of Chironomidae and it caused a change in the structure of this assemblage in the longitudinal stretch.
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On nonlinear Tollmien-Schlichting/vortex interaction in three-dimensional boundary layers
NASA Technical Reports Server (NTRS)
Davis, Dominic A. R.; Smith, Frank T.
1993-01-01
The instability of an incompressible three-dimensional boundary layer (that is, one with cross-flow) is considered theoretically and computationally in the context of vortex/wave interactions. Specifically the work centers on two low amplitude, lower-branch Tollmien-Schlichting waves which mutually interact to induce a weak longitudinal vortex flow; the vortex motion, in turn, gives rise to significant wave-modulation via wall-shear forcing. The characteristic Reynolds number is taken as a large parameter and, as a consequence, the waves' and the vortex motion are governed primarily by triple-deck theory. The nonlinear interaction is captured by a viscous partial-differential system for the vortex coupled with a pair of amplitude equations for each wave pressure. Three distinct possibilities were found to emerge for the nonlinear behavior of the flow solution downstream - an algebraic finite-distance singularity, far downstream saturation or far-downstream wave-decay (leaving pure vortex flow) - depending on the input conditions, the wave angles, and the size of the cross-flow.
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NASA Astrophysics Data System (ADS)
Walsh, Rory; Nainar, Anand; Nurhidayu, Siti; Higton, Sam; Annammala, Kogilavani; Wall, Katy; Bidin, Kawi; Blake, William; Darling, Isabella
2017-04-01
Oil palm land-use has expanded greatly in recent decades in SE Asia and other parts of the wet tropics, including to steepland areas, where bench-terraced landscaping is involved. Retaining (and sometimes restoring) riparian forest strips and rainforest fragments on the steepest slopes have been adopted as elements of strategies designed to reduce adverse effects on runoff generation, erosion, downstream sedimentation, flooding and pollutional problems - as well as biodiversity and emissions. Results of catchment monitoring, soil erosion and sediment fingerprinting research in oil palm and selectively logged steeplands of eastern Sabah and Peninsular Malaysia are presented. The evidence indicates the greater scale and temporal persistence of effects that oil palm land-use (compared with selective logging) has had on suspended sediment dynamics, soil erosion, downstream sedimentation, channel geometry and dynamics and river pollution. The importance of (1) high densities of roads and tracks and (2) relatively impermeable bench-terraced terrain in enhancing runoff, sediment and nutrient outputs in storm events is stressed. Influences of oil palm management practices including riparian forest strips in increasing or reducing these effects are critically reviewed and ways of increasing the effectiveness of riparian forest strips are proposed. The design and rationale of current projects exploring and testing consequences of existing and proposed improved land management practices are briefly described. The key importance of involvement of people from the oil palm industry (including multinational companies, smallholders and their organizations) and Government bodies that are responsible for land-use policies and land management practices is stressed.
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Chui, A; Murthi, P; Gunatillake, T; Brennecke, S P; Ignjatovic, V; Monagle, P T; Whitelock, J M; Said, J M
2014-08-01
Fetal growth restriction (FGR) is a key cause of adverse pregnancy outcome where maternal and fetal factors are identified as contributing to this condition. Idiopathic FGR is associated with altered vascular endothelial cell functions. Decorin (DCN) has important roles in the regulation of endothelial cell functions in vascular environments. DCN expression is reduced in FGR. The objectives were to determine the functional consequences of reduced DCN in a human microvascular endothelial cell line model (HMVEC), and to determine downstream targets of DCN and their expression in primary placental microvascular endothelial cells (PLECs) from control and FGR-affected placentae. Short-interference RNA was used to reduce DCN expression in HMVECs and the effect on proliferation, angiogenesis and thrombin generation was determined. A Growth Factor PCR Array was used to identify downstream targets of DCN. The expression of target genes in control and FGR PLECs was performed. DCN reduction decreased proliferation and angiogenesis but increased thrombin generation with no effect on apoptosis. The array identified three targets of DCN: FGF17, IL18 and MSTN. Validation of target genes confirmed decreased expression of VEGFA, MMP9, EGFR1, IGFR1 and PLGF in HMVECs and PLECs from control and FGR pregnancies. Reduction of DCN in vascular endothelial cells leads to disrupted cell functions. The targets of DCN include genes that play important roles in angiogenesis and cellular growth. Therefore, differential expression of these may contribute to the pathogenesis of FGR and disease states in other microvascular circulations. Copyright © 2014 Elsevier Ltd. All rights reserved.
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NASA Astrophysics Data System (ADS)
Cuellar, A. D.; McKinney, D. C.
2014-12-01
Climate change has accelerated glacial retreat in high altitude glaciated regions of Peru leading to the growth and formation of glacier lakes. Glacial lake outburst floods (GLOF) are sudden events triggered by an earthquake, avalanche into the lake or other shock that causes a sudden outflow of water. These floods are catastrophic because of their sudden onset, the difficulty predicting them, and enormous quantity of water and debris rapidly flooding downstream areas. Palcacocha Lake in the Peruvian Andes has experienced accelerated growth since it burst in 1941 and threatens the major city of Huaraz and surrounding communities. Since the 1941 flood stakeholders have advocated for projects to adapt to the increasing threat posed by Palcacocha Lake. Nonetheless, discussions surrounding projects for Palcacocha have not included a rigorous analysis of the potential consequences of a flood, probability of an event, or costs of mitigation projects. This work presents the first step to rationally analyze the risks posed by Palcacocha Lake and the various adaptation projects proposed. In this work the authors use decision analysis to asses proposed adaptation measures that would mitigate damage in downstream communities from a GLOF. We use an existing hydrodynamic model of the at-risk area to determine how adaptation projects will affect downstream flooding. Flood characteristics are used in the HEC-FIA software to estimate fatalities and injuries from an outburst flood, which we convert to monetary units using the value of a statistical life. We combine the monetary consequences of a GLOF with the cost of the proposed projects and a diffuse probability distribution for the likelihood of an event to estimate the expected cost of the adaptation plans. From this analysis we found that lowering the lake level by 15 meters has the least expected cost of any proposal despite uncertainty in the effect of lake lowering on flooding downstream.
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Hillslope erosion rates in the oak savannas of the southwestern borderlands region
Aaron T. Kauffman; Cody L. Stropki; Peter F. Ffolliott; Gerald J. Gottfried; Daniel G. Neary
2007-01-01
Hillslope soil erosion on watershed landscapes can lower the productivity of upland sites and adversely impact water quality and downstream (off-site) areas. It is not surprising, therefore, that excessive soil erosion and the consequent sedimentation can represent significant costs to the land and people that are affected. The first known estimates of hillslope soil...
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Particulate organic matter dynamics in ephemeral tributaries of a Central Appalachian stream
Headwater ephemeral tributaries are external interfaces between uplands and downstream waters. Terrestrial particulate organic matter (POM) is important in fueling aquatic ecosystems, however the extent to which ephemeral tributaries are functionally connected to downstream water...
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NASA Astrophysics Data System (ADS)
Anthony, Edward J.; Julian, Maurice
1999-12-01
Steep coastal margins are potentially subject to mass wasting processes involving notable landslide activity and sediment evacuation downstream by steep-gradient streams. Sediment transfer from short source-to-sink segments, coupled with mountain hydrological regimes, regulate patterns of river channel aggradation and coastal sediment supply in such geomorphic settings. On the steep French Riviera margin, sediment transfers from existing landslides or from various minor mass wasting processes to stream channels may result following bursts of heavy, concentrated rainfall. High-magnitude flooding and massive sediment transport downstream are generally related to unpredictable extreme rainfalls. Both mass movements and channel sediment storage pose serious hazards to downvalley settlements and infrastructure. A consideration of channel sediment storage patterns in the Var River catchment, the most important catchment in this area, highlights two important shortcomings relative to environmental engineering and hazard mitigation practices. In the first place, the appreciation of geomorphic processes is rather poor. This is illustrated by the undersized nature of engineering works constructed to mitigate hazards in the upstream bedload-dominated channels, and by the unforeseen effects that ten rock dams, constructed in the early 1970s, have had on downstream and coastal sediment storage and on sediment dispersal patterns and, consequently, valley flooding. Secondly, planners and environmental engineers have lacked foresight in valley and coastal management issues on this steep setting, notably as regards the reclaimed areas of the lower Var channel and delta liable to flooding. Urbanization and transport and environmental engineering works have progressively affected patterns of storage and transport of fine-grained sediments in the lower Var channel and delta. Meanwhile the problems raised by these changes have not been adequately addressed in terms of scientific research. A necessary future step in bettering the engineering solutions implemented to contain natural hazards or to harness water and sediment resources is that of fine-scale analysis of source-to-sink sediment transfer processes, of sediment budgets, of time-scales of storage in stream channels, and, finally, of high-magnitude hydrometeorological forcing events in this area. The way all these aspects have been modulated by engineering practices and socioeconomic development should also be an important part of such an analysis.
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Fossil clam shells reveal unintended carbon cycling consequences of Colorado River management
Auerbach, Daniel A.; Flessa, Karl W.; Flecker, Alexander S.; Dietl, Gregory P.
2016-01-01
Water management that alters riverine ecosystem processes has strongly influenced deltas and the people who depend on them, but a full accounting of the trade-offs is still emerging. Using palaeoecological data, we document a surprising biogeochemical consequence of water management in the Colorado River basin. Complete allocation and consumptive use of the river's flow has altered the downstream estuarine ecosystem, including the abundance and composition of the mollusc community, an important component in estuarine carbon cycling. In particular, population declines in the endemic Colorado delta clam, Mulinia coloradoensis, from 50--125 individuals m−2 in the pre-dam era to three individuals m−2 today, have likely resulted in a reduction, on the order of 5900–15 000 t C yr−1 (4.1–10.6 mol C m−2 yr−1), in the net carbon emissions associated with molluscs. Although this reduction is large within the estuarine system, it is small in comparison with annual global carbon emissions. Nonetheless, this finding highlights the need for further research into the effects of dams, diversions and reservoirs on the biogeochemistry of deltas and estuaries worldwide, underscoring a present need for integrated water and carbon planning. PMID:27703685
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Fossil clam shells reveal unintended carbon cycling consequences of Colorado River management
NASA Astrophysics Data System (ADS)
Smith, Jansen A.; Auerbach, Daniel A.; Flessa, Karl W.; Flecker, Alexander S.; Dietl, Gregory P.
2016-09-01
Water management that alters riverine ecosystem processes has strongly influenced deltas and the people who depend on them, but a full accounting of the trade-offs is still emerging. Using palaeoecological data, we document a surprising biogeochemical consequence of water management in the Colorado River basin. Complete allocation and consumptive use of the river's flow has altered the downstream estuarine ecosystem, including the abundance and composition of the mollusc community, an important component in estuarine carbon cycling. In particular, population declines in the endemic Colorado delta clam, Mulinia coloradoensis, from 50-125 individuals m-2 in the pre-dam era to three individuals m-2 today, have likely resulted in a reduction, on the order of 5900-15 000 t C yr-1 (4.1-10.6 mol C m-2 yr-1), in the net carbon emissions associated with molluscs. Although this reduction is large within the estuarine system, it is small in comparison with annual global carbon emissions. Nonetheless, this finding highlights the need for further research into the effects of dams, diversions and reservoirs on the biogeochemistry of deltas and estuaries worldwide, underscoring a present need for integrated water and carbon planning.
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[Targeting of membrane receptor tyrosine kinases: is there resistance in the HER?].
Monnier, Lucile; Milano, Gérard; Penault-Llorca, Frédérique; Merlin, Jean-Louis
2004-09-01
Human Epidermal growth factor Receptors (HER) play an important role in cellular proliferation, and differentiation. Their overexpression in tumor tissues is often associated with a poor prognosis. Consequently, HER receptors are interesting therapeutic targets for cancer treatment. Two strategies are proposed. First, monoclonal antibodies can be used to inhibit the binding of one ligand to its receptor. The second approach is based upon the designing of tyrosine kinase inhibitors capable to bind into the phosphorylation site of the receptor. Consequently, both approaches block the signal transduction downstream. Resistance to anti receptor tyrosine kinase therapy can lead to enhanced morbidity associated with high therapeutic cost. Different mechanisms can be implicated. Non specific mechanisms include alterations of the signal transduction pathways (PI3K/AKT), recruitment of alternative receptor tyrosine kinase pathways (IGFR, VEGFR) and proteasome degradation inhibition. Other mechanisms are specific to HER and rely on inhibition of the binding of monoclonal antibodies (sialomucin-MUC4), heterodimerisation of HER, truncated soluble receptors intervention and mutated variants, as demonstrated very recently with EGF receptors, or genetic polymorphism. This paper reviews these different resistance mechanisms that have been identified in preclinical and clinical situations.
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Güç, Esra; Briquez, Priscilla S; Foretay, Didier; Fankhauser, Manuel A; Hubbell, Jeffrey A; Kilarski, Witold W; Swartz, Melody A
2017-07-01
Lymphangiogenesis occurs in inflammation and wound healing, yet its functional roles in these processes are not fully understood. Consequently, clinically relevant strategies for therapeutic lymphangiogenesis remain underdeveloped, particularly using growth factors. To achieve controlled, local capillary lymphangiogenesis with protein engineering and determine its effects on fluid clearance, leukocyte trafficking, and wound healing, we developed a fibrin-binding variant of vascular endothelial growth factor C (FB-VEGF-C) that is slowly released upon demand from infiltrating cells. Using a novel wound healing model, we show that implanted fibrin containing FB-VEGF-C, but not free VEGF-C, could stimulate local lymphangiogenesis in a dose-dependent manner. Importantly, the effects of FB-VEGF-C were restricted to lymphatic capillaries, with no apparent changes to blood vessels and downstream collecting vessels. Leukocyte intravasation and trafficking to lymph nodes were increased in hyperplastic lymphatics, while fluid clearance was maintained at physiological levels. In diabetic wounds, FB-VEGF-C-induced lymphangiogenesis increased extracellular matrix deposition and granulation tissue thickening, indicators of improved wound healing. Together, these results indicate that FB-VEGF-C is a promising strategy for inducing lymphangiogenesis locally, and that such lymphangiogenesis can promote wound healing by enhancing leukocyte trafficking without affecting downstream lymphatic collecting vessels. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.
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INDIRECT UPSTREAM EFFECTS OF DAMS: CONSEQUENCES OF MIGRATORY CONSUMER EXTIRPATION IN PUERTO RICO
EFFIE A. GREATHOUSE; CATHERINE M. PRINGLE; WILLIAM H. MCDOWELL; JEFF G. HOLMQUIST
2006-01-01
Large dams degrade the integrity of a wide variety of ecosystems, yet direct downstream effects of dams have received the most attention from ecosystem managers and researchers. We investigated indirect upstream effects of dams resulting from decimation of migratory freshwater shrimp and fish populations in Puerto Rico, USA, in both high- and low-gradient streams. In...
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Tracking hippo in the cancer jungle.
Suh, Jung H; Saba, Julie D
2014-07-17
Signaling through the Hippo pathway controls major aspects of cell growth and proliferation. Focusing on the metabolic consequences of Hippo signaling, Mulvihill and colleagues in this issue of Chemistry & Biology employ a large scale, integrative approach and uncover downstream reorganization of cellular metabolism when the effector TAZ is upregulated, identifying new connections to lipid metabolism. Copyright © 2014 Elsevier Ltd. All rights reserved.
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Lee, Phyllis C; Bussière, Luc F; Webber, C Elizabeth; Poole, Joyce H; Moss, Cynthia J
2013-04-23
Growth from conception to reproductive onset in African elephants (Loxodonta africana) provides insights into phenotypic plasticity, individual adaptive plastic responses and facultative maternal investment. Using growth for 867 and life histories for 2652 elephants over 40 years, we demonstrate that maternal inexperience plus drought in early life result in reduced growth rates for sons and higher mortality for both sexes. Slow growth during early lactation was associated with smaller adult size, later age at first reproduction, reduced lifetime survival and consequently limited reproductive output. These enduring effects of trading slow early growth against immediate survival were apparent over the very long term; delayed downstream consequences were unexpected for a species with a maximum longevity of 70+ years and unpredictable environmental experiences.
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Taking two to tango: a role for ghrelin receptor heterodimerization in stress and reward.
Schellekens, Harriët; Dinan, Timothy G; Cryan, John F
2013-08-30
The gut hormone, ghrelin, is the only known peripherally derived orexigenic signal. It activates its centrally expressed receptor, the growth hormone secretagogue receptor (GHS-R1a), to stimulate food intake. The ghrelin signaling system has recently been suggested to play a key role at the interface of homeostatic control of appetite and the hedonic aspects of food intake, as a critical role for ghrelin in dopaminergic mesolimbic circuits involved in reward signaling has emerged. Moreover, enhanced plasma ghrelin levels are associated with conditions of physiological stress, which may underline the drive to eat calorie-dense "comfort-foods" and signifies a role for ghrelin in stress-induced food reward behaviors. These complex and diverse functionalities of the ghrelinergic system are not yet fully elucidated and likely involve crosstalk with additional signaling systems. Interestingly, accumulating data over the last few years has shown the GHS-R1a receptor to dimerize with several additional G-protein coupled receptors (GPCRs) involved in appetite signaling and reward, including the GHS-R1b receptor, the melanocortin 3 receptor (MC3), dopamine receptors (D1 and D2), and more recently, the serotonin 2C receptor (5-HT2C). GHS-R1a dimerization was shown to affect downstream signaling and receptor trafficking suggesting a potential novel mechanism for fine-tuning GHS-R1a receptor mediated activity. This review summarizes ghrelin's role in food reward and stress and outlines the GHS-R1a dimer pairs identified to date. In addition, the downstream signaling and potential functional consequences of dimerization of the GHS-R1a receptor in appetite and stress-induced food reward behavior are discussed. The existence of multiple GHS-R1a heterodimers has important consequences for future pharmacotherapies as it significantly increases the pharmacological diversity of the GHS-R1a receptor and has the potential to enhance specificity of novel ghrelin-targeted drugs.
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Taking two to tango: a role for ghrelin receptor heterodimerization in stress and reward
Schellekens, Harriët; Dinan, Timothy G.; Cryan, John F.
2013-01-01
The gut hormone, ghrelin, is the only known peripherally derived orexigenic signal. It activates its centrally expressed receptor, the growth hormone secretagogue receptor (GHS-R1a), to stimulate food intake. The ghrelin signaling system has recently been suggested to play a key role at the interface of homeostatic control of appetite and the hedonic aspects of food intake, as a critical role for ghrelin in dopaminergic mesolimbic circuits involved in reward signaling has emerged. Moreover, enhanced plasma ghrelin levels are associated with conditions of physiological stress, which may underline the drive to eat calorie-dense “comfort-foods” and signifies a role for ghrelin in stress-induced food reward behaviors. These complex and diverse functionalities of the ghrelinergic system are not yet fully elucidated and likely involve crosstalk with additional signaling systems. Interestingly, accumulating data over the last few years has shown the GHS-R1a receptor to dimerize with several additional G-protein coupled receptors (GPCRs) involved in appetite signaling and reward, including the GHS-R1b receptor, the melanocortin 3 receptor (MC3), dopamine receptors (D1 and D2), and more recently, the serotonin 2C receptor (5-HT2C). GHS-R1a dimerization was shown to affect downstream signaling and receptor trafficking suggesting a potential novel mechanism for fine-tuning GHS-R1a receptor mediated activity. This review summarizes ghrelin's role in food reward and stress and outlines the GHS-R1a dimer pairs identified to date. In addition, the downstream signaling and potential functional consequences of dimerization of the GHS-R1a receptor in appetite and stress-induced food reward behavior are discussed. The existence of multiple GHS-R1a heterodimers has important consequences for future pharmacotherapies as it significantly increases the pharmacological diversity of the GHS-R1a receptor and has the potential to enhance specificity of novel ghrelin-targeted drugs. PMID:24009547
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Spray characteristics of two combined jet atomizers
NASA Astrophysics Data System (ADS)
Tambour, Y.; Portnoy, D.
The downstream changes in droplet volume concentration of a vaporizing fuel spray produced by two jet atomizers which form an overlapping zone of influence is theoretically analyzed, employing experimental data of Yule et al. (1982) for a single jet atomizer as initial conditions. One of the atomizers is located below the other at a certain distance downstream. Such an injection geometry can be found in afterburners of modern jet engines. The influence of various vertical and horizontal distances between the two atomizers on the downstream spray characteristics is investigated for a vaporizing kerosene spray in a 'cold' (293 K) and a 'hot' (450 K) environment. The analysis shows how one can control the downstream spray characteristics via the geometry of injection. Such geometrical considerations may be of great importance in the design of afterburner wall geometry and in the reduction of wall thermal damage. The injection geometry may also affect the intensity of the spray distribution which determines the mode of droplet group combustion. The latter plays an important role in improving afterburner combustion efficiency.
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Oxidative stress and adipocyte biology: focus on the role of AGEs.
Boyer, Florence; Vidot, Jennifer Baraka; Dubourg, Alexis Guerin; Rondeau, Philippe; Essop, M Faadiel; Bourdon, Emmanuel
2015-01-01
Diabetes is a major health problem that is usually associated with obesity, together with hyperglycemia and increased advanced glycation endproducts (AGEs) formation. Elevated AGEs elicit severe downstream consequences via their binding to receptors of AGEs (RAGE). This includes oxidative stress and oxidative modifications of biological compounds together with heightened inflammation. For example, albumin (major circulating protein) undergoes increased glycoxidation with diabetes and may represent an important biomarker for monitoring diabetic pathophysiology. Despite the central role of adipose tissue in many physiologic/pathologic processes, recognition of the effects of greater AGEs formation in this tissue is quite recent within the obesity/diabetes context. This review provides a brief background of AGEs formation and adipose tissue biology and thereafter discusses the impact of AGEs-adipocyte interactions in pathology progression. Novel data are included showing how AGEs (especially glycated albumin) may be involved in hyperglycemia-induced oxidative damage in adipocytes and its potential links to diabetes progression.
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Role of YAP/TAZ in cell-matrix adhesion-mediated signalling and mechanotransduction
DOE Office of Scientific and Technical Information (OSTI.GOV)
Dupont, Sirio, E-mail: sirio.dupont@unipd.it
2016-04-10
Signalling from the extracellular matrix (ECM) is a fundamental cellular input that sustains proliferation, opposes cell death and regulates differentiation. Through integrins, cells perceive both the chemical composition and physical properties of the ECM. In particular, cell behaviour is profoundly influenced by the mechanical elasticity or stiffness of the ECM, which regulates the ability of cells to develop forces through their contractile actomyosin cytoskeleton and to mature focal adhesions. This mechanosensing ability affects fundamental cellular functions, such that alterations of ECM stiffness is nowadays considered not a simple consequence of pathology, but a causative input driving aberrant cell behaviours. Wemore » here discuss recent advances on how mechanical signals intersect nuclear transcription and in particular the activity of YAP/TAZ transcriptional coactivators, known downstream transducers of the Hippo pathway and important effectors of ECM mechanical cues.« less
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Adult chinook salmon passage at Little Goose Dam in relation to spill operations
Jepson, M.A.; Caudill , C.C.; Clabough, T.S.; Peery, C.A.; Beeman, J.W.; Fielding, S.
2009-01-01
Spill patterns at Little Goose Dam in 2007 were modified in anticipation of a spillway weir installation intended to improve downstream passage of juvenile salmonids. However, in spill pattern was associated with reduced daily counts of adult salmon passing the dam. Consequently, the behaviors and upstream passage times of radio-tagged adult spring–summer Chinook salmon were evaluated in response to three spillway discharge patterns at Little Goose Dam during 2008. Simultaneously, tailrace conditions were characterized by monitoring the downstream paths of GPS-equipped drogues. Two of the spill treatments (i.e., Bulk and Alternate) were variations of patterns thought to mimic those produced if a spillway weir was installed. The third treatment (Uniform) was characterized by spilling similar volumes of water through most spillbays.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Manela, A.
The acoustic signature of an acoustically compact tandem airfoil setup in uniform high-Reynolds number flow is investigated. The upstream airfoil is considered rigid and is actuated at its leading edge with small-amplitude harmonic pitching motion. The downstream airfoil is taken passive and elastic, with its motion forced by the vortex-street excitation of the upstream airfoil. The non-linear near-field description is obtained via potential thin-airfoil theory. It is then applied as a source term into the Powell-Howe acoustic analogy to yield the far-field dipole radiation of the system. To assess the effect of downstream-airfoil elasticity, results are compared with counterpart calculationsmore » for a non-elastic setup, where the downstream airfoil is rigid and stationary. Depending on the separation distance between airfoils, airfoil-motion and airfoil-wake dynamics shift between in-phase (synchronized) and counter-phase behaviors. Consequently, downstream airfoil elasticity may act to amplify or suppress sound through the direct contribution of elastic-airfoil motion to the total signal. Resonance-type motion of the elastic airfoil is found when the upstream airfoil is actuated at the least stable eigenfrequency of the downstream structure. This, again, results in system sound amplification or suppression, depending on the separation distance between airfoils. With increasing actuation frequency, the acoustic signal becomes dominated by the direct contribution of the upstream airfoil motion, whereas the relative contribution of the elastic airfoil to the total signature turns negligible.« less
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EPA has published a Direct Final Rule that addresses requirements for parties that handle pipeline interface as well as addresses downstream quality assurance requirements for refiners (EPA publication # EPA-420-F-06-039).
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Geographically isolated wetlands (GIW), defined as depressional wetlands completely surrounded by uplands, support an array of ecological processes. A solid scientific understanding of the hydrologic effects of GIWs upon downstream waterways is important for legal and policy-mak...
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Melanie Vanderhoof; Laurie Alexander
2016-01-01
The degree of hydrological connectivity between wetland systems and downstream receiving waters can be expected to influence the volume and variability of stream discharge. The Prairie Pothole Region contains a high density of depressional wetland features, a consequence of glacial retreat. Spatial variability in wetland density, drainage evolution, and precipitation...
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Paul, Gisela; Marchelletta, Ronald R; McCole, Declan F; Barrett, Kim E
2012-01-13
The epidermal growth factor receptor (EGFr) regulates many cellular functions, such as proliferation, apoptosis, and ion transport. Our aim was to investigate whether long term treatment with interferon-γ (IFN-γ) modulates EGF activation of downstream signaling pathways in intestinal epithelial cells and if this contributes to dysregulation of epithelial ion transport in inflammation. Polarized monolayers of T(84) and HT29/cl.19A colonocytes were preincubated with IFN-γ prior to stimulation with EGF. Basolateral potassium transport was studied in Ussing chambers. We also studied inflamed colonic mucosae from C57BL/6 mice treated with dextran sulfate sodium or mdr1a knock-out mice and controls. IFN-γ increased intestinal epithelial EGFr expression without increasing its phosphorylation. Conversely, IFN-γ caused a significant decrease in EGF-stimulated phosphorylation of specific EGFr tyrosine residues and activation of ERK but not Akt-1. In IFNγ-pretreated cells, the inhibitory effect of EGF on carbachol-stimulated K(+) channel activity was lost. In inflamed colonic tissues, EGFr expression was significantly increased, whereas ERK phosphorylation was reduced. Thus, although it up-regulates EGFr expression, IFN-γ causes defective EGFr activation in colonic epithelial cells via reduced phosphorylation of specific EGFr tyrosine residues. This probably accounts for altered downstream signaling consequences. These observations were corroborated in the setting of colitis. IFN-γ also abrogates the ability of EGF to inhibit carbachol-stimulated basolateral K(+) currents. Our data suggest that, in the setting of inflammation, the biological effect of EGF, including the inhibitory effect of EGF on Ca(2+)-dependent ion transport, is altered, perhaps contributing to diarrheal and other symptoms in vivo.
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NASA Astrophysics Data System (ADS)
Bravard, Jean-Paul; Goichot, Marc; Tronchère, Hervé
2014-02-01
The Lower Mekong River has been an important research topic for at least 15 years, notably in the fields of hydrology, fluvial geomorphology, and the impact of dams. Recent papers refer mostly to the impact of the Lancang chain of hydroelectric dams constructed on the Chinese section of the river. Among the pending scientific questions are (1) the upstream-downstream variations in the concentration and yield of suspended sediment and (2) the relative importance of sand in the total yield. The general consensus among the scientific community is that the relative importance of sand in suspended load is not the main scientific concern despite its extensive presence in the Mekong River channel, as noted by geomorphologists, and despite its extreme importance for the stability of the delta shoreline in Viet Nam. This paper contradicts the general consensus. Its objective is to present new information on the processes of sand transport in the Lower Mekong channel. Imagery, field observations, sampling on the river banks, and grain size analysis of sand deposits have been carried out between Chiang Sean (downstream of the Chinese border) and the delta. The C-M image technique served to discriminate between the various transport processes (bedload and different types of suspension). This technique helps in understanding the changing processes responsible for downstream sediment transfer in river channels. The results of this study are the following.
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Interactions of a co-rotating vortex pair at multiple offsets
NASA Astrophysics Data System (ADS)
Forster, Kyle J.; Barber, Tracie J.; Diasinos, Sammy; Doig, Graham
2017-05-01
Two NACA0012 vanes at various lateral offsets were investigated by wind tunnel testing to observe the interactions between the streamwise vortices. The vanes were separated by nine chord lengths in the streamwise direction to allow the upstream vortex to impact on the downstream geometry. These vanes were evaluated at an angle of incidence of 8° and a Reynolds number of 7 ×104 using particle image velocimetry. A helical motion of the vortices was observed, with rotational rate increasing as the offset was reduced to the point of vortex merging. Downstream meandering of the weaker vortex was found to increase in magnitude near the point of vortex merging. The merging process occurred more rapidly when the upstream vortex was passed on the pressure side of the vane, with the downstream vortex being produced with less circulation and consequently merging into the upstream vortex. The merging distance was found to be statistical rather than deterministic quantity, indicating that the meandering of the vortices affected their separations and energies. This resulted in a fluctuation of the merging location. A loss of circulation associated with the merging process was identified, with the process of achieving vortex circularity causing vorticity diffusion, however all merged cases maintained higher circulation than a single vortex condition. The presence of the upstream vortex was found to reduce the strength of the downstream vortex in all offsets evaluated.
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Carr, Joel; D'Odorico, Paul; McGlathery, Karen; Wiberg, Patricia L.
2016-01-01
In shallow coastal bays where nutrient loading and riverine inputs are low, turbidity, and the consequent light environment are controlled by resuspension of bed sediments due to wind-waves and tidal currents. High sediment resuspension and low light environments can limit benthic primary productivity; however, both currents and waves are affected by the presence of benthic plants such as seagrass. This feedback between the presence of benthic primary producers such as seagrass and the consequent light environment has been predicted to induce bistable dynamics locally. However, these vegetated areas influence a larger area than they footprint, including a barren adjacent downstream area which exhibits reduced shear stresses. Here we explore through modeling how the patchy structure of seagrass meadows on a landscape may affect sediment resuspension and the consequent light environment due to the presence of this sheltered region. Heterogeneous vegetation covers comprising a mosaic of randomly distributed patches were generated to investigate the effect of patch modified hydrodynamics. Actual cover of vegetation on the landscape was used to facilitate comparisons across landscape realizations. Hourly wave and current shear stresses on the landscape along with suspended sediment concentration and light attenuation characteristics were then calculated and spatially averaged to examine how actual cover and mean water depth affect the bulk sediment and light environment. The results indicate that an effective cover, which incorporates the sheltering area, has important controls on the distributions of shear stress, suspended sediment, light environment, and consequent seagrass habitat suitability. Interestingly, an optimal habitat occurs within a depth range where, if actual cover is reduced past some threshold, the bulk light environment would no longer favor seagrass growth.
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NASA Astrophysics Data System (ADS)
Pattison, Ian; Lane, Stuart; Hardy, Richard; Reaney, Sim
2010-05-01
The recent increase in flood frequency and magnitude has been hypothesised to have been caused by either climate change or land management. Field scale studies have found that changing land management practices does affect local runoff and streamflow, but upscaling these effects to the catchment scale continues to be problematic, both conceptually and more importantly methodologically. The impact on downstream flood risk is highly dependent upon where the changes are in the catchment, indicating that some areas of the catchment are more important in determining downstream flood risk than others. This is a major flaw in the traditional approach to studying the effect of land use on downstream flood risk: catchment scale hydrological models, which treat every cell in the model equally. We are proposing an alternative ideological approach for doing flood management research, which is underpinned by downscaling the downstream effect (problem i.e. flooding) to the upstream causes (contributing sub-catchments). It is hoped that this approach could have several benefits over the traditional upscaling approach. Firstly, it provides an efficient method to prioritise areas for land use management changes to be implemented to reduce downstream flood risk. Secondly, targets for sub-catchment hydrograph change can be determined which will deliver the required downstream effect. Thirdly, it may be possible to detect the effect of land use changes in upstream areas on downstream flood risk, by weighting the areas of most importance in hydrological models. Two methods for doing this downscaling are proposed; 1) data-based statistical analysis; and 2) hydraulic modelling-based downscaling. These will be outlined using the case study of the River Eden, Cumbria, NW England. The data-based methodology uses the timing and magnitude of floods for each sub-catchment. Principal components analysis (PCA) is used to simplify sub-catchment interactions and optimising stepwise regression is used to predict downstream flood magnitude from the significant principal components. Two particular sub-catchments, the Eamont and the Upper Eden were highlighted as explaining the highest proportion of downstream flood risk, with 21.0% and 19.6% respectively. This approach uses the concept of data mining, whereby commonly available discharge data is used in an innovative way to learn about catchment behaviour. An alternative downscaling approach is hydraulic modelling whereby the input hydrographs from each tributary are changed in turn, both in terms of the magnitudes and the timing of the flows. This basic scenario testing approach can be used to assess the sensitivity of downstream flood risk to upstream contributing tributaries. This approach also highlighted the Upper Eden and Eamont as the most sensitive sub-catchments. A 25% reduction in the flows from these sub-catchments resulted in a 33.1cm and 21.9cm stage reduction downstream respectively, while an 8 hour delay of the peak flow caused a 32.3cm and 27.4cm decrease in downstream stage respectively. This alternative flood management approach is not a replacement to traditional hydrological modelling (upscaling), but a pre-step which allows for more focussed and informed investigation of land management scenarios, in the area where they are most likely to have beneficial impacts on downstream flooding.
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Chemical characteristics of Delaware River water, Trenton, New Jersey, to Marcus Hook, Pennsylvania
Durfor, Charles N.; Keighton, Walter B.
1954-01-01
This progress report gives the results of an investigation of the quality of water in the Delaware River from Trenton, N. J. to Marcus Hook, Pa., for the period August 1949 to December 1952. The Delaware River is the principal source of water for the many industries and municipal water supplies along this reach of the river and both industries and municipalities use it for the disposal of their wastes. Consequently, a study of the quality of the water and variations in the quality caused by changes in streamflow, tidal effects, pollution and other factors is important to the many users. In both New Jersey and Pennsylvania steps are being taken to abate pollution, thus it is of more than passing interest to measure the effects of waste treatment on the quality of the Delaware River water. At average or higher rates of streamflow the mineral content of the water increases slightly from Trenton to Marcus Hook. There is little variation in the concentration of dissolved minerals from bank to bank or from top to bottom of the river. At times of protracted low rates of flow the effect of ocean water mixing with the river water may be noted as far upstream as Philadelphia. At such times the salinity is often greater near the bottom of the river than near the top. The increase in chloride concentration upstream from Philadelphia is small compared to the rapid increase downstream from Philadelphia. Temperatures of offshore water vary with the season, but on a given day are substantially uniform throughout the reach of the river from Trenton to Marcus Hook. The water contains less dissolved oxygen as it flows downstream indicating that oxygen is being consumed by oxidizable matter. From Philadelphia downstream there are periods, especially in late summer, when the dissolved oxygen is barely sufficient to meet the oxygen demands of the pollution load.
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Le, Huong T.; Ho, Cuong T.; Trinh, Quan H.; Trinh, Duc A.; Luu, Minh T. N.; Tran, Hai S.; Orange, Didier; Janeau, Jean L.; Merroune, Asmaa; Rochelle-Newall, Emma; Pommier, Thomas
2016-01-01
Organic fertilizer application is often touted as an economical and effective method to increase soil fertility. However, this amendment may increase dissolved organic carbon (DOC) runoff into downstream aquatic ecosystems and may consequently alter aquatic microbial community. We focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different organic fertilizers was incubated for 16 days in a series of 200 L mesocosms filled with water from a downstream reservoir. We applied 454 high throughput pyrosequencing for bacterial 16S rRNA genes to analyze microbial communities. After 16 days of incubation, the richness and evenness of the microbial communities present decreased in the mesocosms amended with any organic fertilizers, except for the evenness in the mesocosms amended with compost runoff. In contrast, they increased in the reservoir water control and soil-only amended mesocosms. Community structure was mainly affected by pH and DOC concentration. Compared to the autochthonous organic carbon produced during primary production, the addition of allochthonous DOC from these organic amendments seemed to exert a stronger effect on the communities over the period of incubation. While the Proteobacteria and Actinobacteria classes were positively associated with higher DOC concentration, the number of sequences representing key bacterial groups differed between mesocosms particularly between the biochar runoff addition and the compost or vermi-compost runoff additions. The genera of Propionibacterium spp. and Methylobacterium spp. were highly abundant in the compost runoff additions suggesting that they may represent sentinel species of complex organic carbon inputs. Overall, this work further underlines the importance of studying the off-site impacts of organic fertilizers as their impact on downstream aquatic systems is not negligible. PMID:27379034
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Le, Huong T; Ho, Cuong T; Trinh, Quan H; Trinh, Duc A; Luu, Minh T N; Tran, Hai S; Orange, Didier; Janeau, Jean L; Merroune, Asmaa; Rochelle-Newall, Emma; Pommier, Thomas
2016-01-01
Organic fertilizer application is often touted as an economical and effective method to increase soil fertility. However, this amendment may increase dissolved organic carbon (DOC) runoff into downstream aquatic ecosystems and may consequently alter aquatic microbial community. We focused on understanding the effects of DOC runoff from soils amended with compost, vermicompost, or biochar on the aquatic microbial community of a tropical reservoir. Runoff collected from a series of rainfall simulations on soils amended with different organic fertilizers was incubated for 16 days in a series of 200 L mesocosms filled with water from a downstream reservoir. We applied 454 high throughput pyrosequencing for bacterial 16S rRNA genes to analyze microbial communities. After 16 days of incubation, the richness and evenness of the microbial communities present decreased in the mesocosms amended with any organic fertilizers, except for the evenness in the mesocosms amended with compost runoff. In contrast, they increased in the reservoir water control and soil-only amended mesocosms. Community structure was mainly affected by pH and DOC concentration. Compared to the autochthonous organic carbon produced during primary production, the addition of allochthonous DOC from these organic amendments seemed to exert a stronger effect on the communities over the period of incubation. While the Proteobacteria and Actinobacteria classes were positively associated with higher DOC concentration, the number of sequences representing key bacterial groups differed between mesocosms particularly between the biochar runoff addition and the compost or vermi-compost runoff additions. The genera of Propionibacterium spp. and Methylobacterium spp. were highly abundant in the compost runoff additions suggesting that they may represent sentinel species of complex organic carbon inputs. Overall, this work further underlines the importance of studying the off-site impacts of organic fertilizers as their impact on downstream aquatic systems is not negligible.
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Development of Nested Socioeconomic Storylines for Climate Change IAV Applications (Invited)
NASA Astrophysics Data System (ADS)
Preston, B. L.; Absar, M.
2013-12-01
Socioeconomic scenarios are important for understanding future societal consequences of climate and weather. The global shared socioeconomic pathways (SSPs) represent a new opportunity for coordinated development and application of such scenarios to improve the representation of alternative societal development pathways within climate change consequence analysis. However, capitalizing on this opportunity necessitates bridging the scale disparity between the global SSPs and the regional/local context for which many impact, adaptation and vulnerability (IAV) studies are conducted. To this end, we adopted the Factor, Actor, and Sector methodology to develop a set of qualitative national and sub-national socioeconomic storylines for the United States and U.S. Southeast using the global SSPs as boundary conditions. In particular, our study sought to develop storylines to explore alternative socioeconomic futures for the U.S. Southeast and their implications for adaptive capacity of the region's energy, water, and agricultural sectors. These storylines subsequently serve as the foundation for a range of downstream IAV applications. These include qualitative vulnerability analysis to explore interactions between energy, water, and agriculture in a changing climate; as well as quantitative impact assessment where regional storylines are used to establish modeling parameters within a biophysical crop model. Such methods and applications illustrate potentially useful opportunities for routinizing the use of SSP-based storylines in IAV studies.
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Pagan, Marino
2014-01-01
Finding sought objects requires the brain to combine visual and target signals to determine when a target is in view. To investigate how the brain implements these computations, we recorded neural responses in inferotemporal cortex (IT) and perirhinal cortex (PRH) as macaque monkeys performed a delayed-match-to-sample target search task. Our data suggest that visual and target signals were combined within or before IT in the ventral visual pathway and then passed onto PRH, where they were reformatted into a more explicit target match signal over ∼10–15 ms. Accounting for these dynamics in PRH did not require proposing dynamic computations within PRH itself but, rather, could be attributed to instantaneous PRH computations performed upon an input representation from IT that changed with time. We found that the dynamics of the IT representation arose from two commonly observed features: individual IT neurons whose response preferences were not simply rescaled with time and variable response latencies across the population. Our results demonstrate that these types of time-varying responses have important consequences for downstream computation and suggest that dynamic representations can arise within a feedforward framework as a consequence of instantaneous computations performed upon time-varying inputs. PMID:25122904
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River corridor science: Hydrologic exchange and ecological consequences from bedforms to basins
Harvey, Judson; Gooseff, Michael
2015-01-01
Previously regarded as the passive drains of watersheds, over the past 50 years, rivers have progressively been recognized as being actively connected with off-channel environments. These connections prolong physical storage and enhance reactive processing to alter water chemistry and downstream transport of materials and energy. Here we propose river corridor science as a concept that integrates downstream transport with lateral and vertical exchange across interfaces. Thus, the river corridor, rather than the wetted river channel itself, is an increasingly common unit of study. Main channel exchange with recirculating marginal waters, hyporheic exchange, bank storage, and overbank flow onto floodplains are all included under a broad continuum of interactions known as “hydrologic exchange flows.” Hydrologists, geomorphologists, geochemists, and aquatic and terrestrial ecologists are cooperating in studies that reveal the dynamic interactions among hydrologic exchange flows and consequences for water quality improvement, modulation of river metabolism, habitat provision for vegetation, fish, and wildlife, and other valued ecosystem services. The need for better integration of science and management is keenly felt, from testing effectiveness of stream restoration and riparian buffers all the way to reevaluating the definition of the waters of the United States to clarify the regulatory authority under the Clean Water Act. A major challenge for scientists is linking the small-scale physical drivers with their larger-scale fluvial and geomorphic context and ecological consequences. Although the fine scales of field and laboratory studies are best suited to identifying the fundamental physical and biological processes, that understanding must be successfully linked to cumulative effects at watershed to regional and continental scales.
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River corridor science: Hydrologic exchange and ecological consequences from bedforms to basins
NASA Astrophysics Data System (ADS)
Harvey, Jud; Gooseff, Michael
2015-09-01
Previously regarded as the passive drains of watersheds, over the past 50 years, rivers have progressively been recognized as being actively connected with off-channel environments. These connections prolong physical storage and enhance reactive processing to alter water chemistry and downstream transport of materials and energy. Here we propose river corridor science as a concept that integrates downstream transport with lateral and vertical exchange across interfaces. Thus, the river corridor, rather than the wetted river channel itself, is an increasingly common unit of study. Main channel exchange with recirculating marginal waters, hyporheic exchange, bank storage, and overbank flow onto floodplains are all included under a broad continuum of interactions known as "hydrologic exchange flows." Hydrologists, geomorphologists, geochemists, and aquatic and terrestrial ecologists are cooperating in studies that reveal the dynamic interactions among hydrologic exchange flows and consequences for water quality improvement, modulation of river metabolism, habitat provision for vegetation, fish, and wildlife, and other valued ecosystem services. The need for better integration of science and management is keenly felt, from testing effectiveness of stream restoration and riparian buffers all the way to reevaluating the definition of the waters of the United States to clarify the regulatory authority under the Clean Water Act. A major challenge for scientists is linking the small-scale physical drivers with their larger-scale fluvial and geomorphic context and ecological consequences. Although the fine scales of field and laboratory studies are best suited to identifying the fundamental physical and biological processes, that understanding must be successfully linked to cumulative effects at watershed to regional and continental scales.
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Wilcox, Andrew C.; O'Connor, James E.; Major, Jon J.
2014-01-01
Condit Dam on the White Salmon River, Washington, a 38 m high dam impounding a large volume (1.8 million m3) of fine-grained sediment (60% sand, 35% silt and clay, and 5% gravel), was rapidly breached in October 2011. This unique dam decommissioning produced dramatic upstream and downstream geomorphic responses in the hours and weeks following breaching. Blasting a 5 m wide hole into the base of the dam resulted in rapid reservoir drawdown, abruptly releasing ~1.6 million m3 of reservoir water, exposing reservoir sediment to erosion, and triggering mass failures of the thickly accumulated reservoir sediment. Within 90 min of breaching, the reservoir's water and ~10% of its sediment had evacuated. At a gauging station 2.3 km downstream, flow increased briefly by 400 m3 s−1during passage of the initial pulse of released reservoir water, followed by a highly concentrated flow phase—up to 32% sediment by volume—as landslide-generated slurries from the reservoir moved downstream. This hyperconcentrated flow, analogous to those following volcanic eruptions or large landslides, draped the downstream river with predominantly fine sand. During the ensuing weeks, suspended-sediment concentration declined and sand and gravel bed load derived from continued reservoir erosion aggraded the channel by >1 m at the gauging station, after which the river incised back to near its initial elevation at this site. Within 15 weeks after breaching, over 1 million m3 of suspended load is estimated to have passed the gauging station, consistent with estimates that >60% of the reservoir's sediment had eroded. This dam removal highlights the influence of interactions among reservoir erosion processes, sediment composition, and style of decommissioning on rate of reservoir erosion and consequent downstream behavior of released sediment.
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Particle image and acoustic Doppler velocimetry analysis of a cross-flow turbine wake
NASA Astrophysics Data System (ADS)
Strom, Benjamin; Brunton, Steven; Polagye, Brian
2017-11-01
Cross-flow turbines have advantageous properties for converting kinetic energy in wind and water currents to rotational mechanical energy and subsequently electrical power. A thorough understanding of cross-flow turbine wakes aids understanding of rotor flow physics, assists geometric array design, and informs control strategies for individual turbines in arrays. In this work, the wake physics of a scale model cross-flow turbine are investigated experimentally. Three-component velocity measurements are taken downstream of a two-bladed turbine in a recirculating water channel. Time-resolved stereoscopic particle image and acoustic Doppler velocimetry are compared for planes normal to and distributed along the turbine rotational axis. Wake features are described using proper orthogonal decomposition, dynamic mode decomposition, and the finite-time Lyapunov exponent. Consequences for downstream turbine placement are discussed in conjunction with two-turbine array experiments.
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El-Armouche, Ali; Gocht, Fabian; Jaeckel, Elmar; Wittköpper, Katrin; Peeck, Micha; Eschenhagen, Thomas
2007-11-01
Desensitization of the beta-adrenoceptor/cAMP/PKA pathway is a hallmark of heart failure. Inhibitor-1 (I-1) acts as a conditional amplifier of beta-adrenergic signalling downstream of PKA by inhibiting type-1 phosphatases in the PKA-phosphorylated form. I-1 is downregulated in failing hearts and thus presumably contributes to beta-adrenergic desensitization. To test whether I-1 downregulation is a consequence of excessive adrenergic drive in heart failure, rats were treated via minipumps with isoprenaline 2.4 mg/kg/day (ISO) or 0.9% NaCl for 4 days. As expected, chronic ISO increased heart-to-body weight ratio by approximately 40% and abolished the inotropic response to acute ISO in papillary muscles by approximately 50%. In the ISO-treated hearts I-1 mRNA and protein levels were decreased by 30% and 54%, respectively. This was accompanied by decreased phospholamban phosphorylation (-40%), a downstream target of I-1, and a reduction in 45Ca2+ uptake (-54%) in membrane vesicles. Notably, phospholamban phosphorylation correlated significantly with I-1 protein levels indicating a causal relationship. We conclude that I-1 downregulation in heart failure is likely a consequence of the increased sympathetic adrenergic drive and participates in desensitization of the beta-adrenergic signalling cascade.
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Skill, N. J.; Theodorakis, N. G.; Wang, Y. N.; Wu, J. M.; Redmond, E. M.; Sitzmann, J. V.
2008-01-01
Portal hypertension (PHT) is a common complication of liver cirrhosis and significantly increases morbidity and mortality. Abrogation of PHT using NSAIDs has demonstrated that prostacyclin (PGI2), a direct downstream metabolic product of cyclooxygenase (COX) activity, is an important mediator in the development of experimental and clinical PHT. However, the role of COX isoforms in PGI2 biosynthesis and PHT is not fully understood. Prehepatic PHT was induced by portal vein ligation (PVL) in wild-type, COX-1−/−, and COX-2−/− mice treated with and without COX-2 (NS398) or COX-1 (SC560) inhibitors. Hemodynamic measurements and PGI2 biosynthesis were determined 1–7 days after PVL or sham surgery. Gene deletion or pharmacological inhibition of COX-1 or COX-2 attenuated but did not ameliorate PGI2 biosynthesis after PVL or prevent PHT. In contrast, treatment of COX-1−/− mice with NS398 or COX-2−/− mice with SC560 restricted PGI2 biosynthesis and abrogated the development of PHT following PVL. In conclusion, either COX-1 or COX-2 can mediate elevated PGI2 biosynthesis and the development of experimental prehepatic PHT. Consequently, PGI2 rather then COX-selective drugs are indicated in the treatment of PHT. Identification of additional target sites downstream of COX may benefit the >27,000 patients whom die annually from cirrhosis in the United States alone. PMID:18772366
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NASA Astrophysics Data System (ADS)
Fredrick, K. C.; Bader, J. A.
2016-12-01
The Rock River of south-central Wisconsin is an integral feature of the glacial legacy and modern drainage system of the region. It runs from the Horicon marsh, a federally protected wetland, through mostly rural areas of Wisconsin and northern Illinois to its outlet to the Mississippi River. Economically important to the adjacent farmers and communities, the Rock River has a colorful history of recreation, management, and especially change. But over the years, changes to the upper Rock River between the Horicon Marsh and Watertown, Wisconsin have induced flooding of unprecedented frequency and duration, especially when compared against hydrometeorological conditions. Anecdotal evidence suggests unusual flooding of large swaths of farmland and roadways, along with unwelcome consequences of those floodwaters have been especially pronounced since the late 1990's. Beginning in 2007, continuous weekly monitoring of the Rock River stage has been conducted in Lebanon Township below the Horicon Marsh. In that time, multiple damaging flood events have been recorded. In search of causes for these anomalous events, especially with regard to duration, upstream and downstream management practices have been evaluated. Dam manipulation downstream of the Lebanon and Ashippun Township sections is one likely cause. However, upon further review, a continued upward trend in stream stage (0.58 feet of increase over nine years) cannot be as easily explained by management practices, especially considering a general decrease in overall precipitation during those same years.
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Distinct modes of gene regulation by a cell-specific transcriptional activator.
Sengupta, Tanushri; Cohet, Nathalie; Morlé, François; Bieker, James J
2009-03-17
The architectural layout of a eukaryotic RNA polymerase II core promoter plays a role in general transcriptional activation. However, its role in tissue-specific expression is not known. For example, differing modes of its recognition by general transcription machinery can provide an additional layer of control within which a single tissue-restricted transcription factor may operate. Erythroid Kruppel-like factor (EKLF) is a hematopoietic-specific transcription factor that is critical for the activation of subset of erythroid genes. We find that EKLF interacts with TATA binding protein-associated factor 9 (TAF9), which leads to important consequences for expression of adult beta-globin. First, TAF9 functionally supports EKLF activity by enhancing its ability to activate the beta-globin gene. Second, TAF9 interacts with a conserved beta-globin downstream promoter element, and ablation of this interaction by beta-thalassemia-causing mutations decreases its promoter activity and disables superactivation. Third, depletion of EKLF prevents recruitment of TAF9 to the beta-globin promoter, whereas depletion of TAF9 drastically impairs beta-promoter activity. However, a TAF9-independent mode of EKLF transcriptional activation is exhibited by the alpha-hemoglobin-stabilizing protein (AHSP) gene, which does not contain a discernable downstream promoter element. In this case, TAF9 does not enhance EKLF activity and depletion of TAF9 has no effect on AHSP promoter activation. These studies demonstrate that EKLF directs different modes of tissue-specific transcriptional activation depending on the architecture of its target core promoter.
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Foxo transcription factors blunt cardiac hypertrophy by inhibiting calcineurin signaling.
Ni, Yan G; Berenji, Kambeez; Wang, Na; Oh, Misook; Sachan, Nita; Dey, Asim; Cheng, Jun; Lu, Guangrong; Morris, David J; Castrillon, Diego H; Gerard, Robert D; Rothermel, Beverly A; Hill, Joseph A
2006-09-12
Cellular hypertrophy requires coordinated regulation of progrowth and antigrowth mechanisms. In cultured neonatal cardiomyocytes, Foxo transcription factors trigger an atrophy-related gene program that counters hypertrophic growth. However, downstream molecular events are not yet well defined. Here, we report that expression of either Foxo1 or Foxo3 in cardiomyocytes attenuates calcineurin phosphatase activity and inhibits agonist-induced hypertrophic growth. Consistent with these results, Foxo proteins decrease calcineurin phosphatase activity and repress both basal and hypertrophic agonist-induced expression of MCIP1.4, a direct downstream target of the calcineurin/NFAT pathway. Furthermore, hearts from Foxo3-null mice exhibit increased MCIP1.4 abundance and a hypertrophic phenotype with normal systolic function at baseline. Together, these results suggest that Foxo proteins repress cardiac growth at least in part through inhibition of the calcineurin/NFAT pathway. Given that hypertrophic growth of the heart occurs in multiple contexts, our findings also suggest that certain hypertrophic signals are capable of overriding the antigrowth program induced by Foxo. Consistent with this, multiple hypertrophic agonists triggered inactivation of Foxo proteins in cardiomyocytes through a mechanism requiring the PI3K/Akt pathway. In addition, both Foxo1 and Foxo3 are phosphorylated and consequently inactivated in hearts undergoing hypertrophic growth induced by hemodynamic stress. This study suggests that inhibition of the calcineurin/NFAT signaling cascade by Foxo and release of this repressive action by the PI3K/Akt pathway are important mechanisms whereby Foxo factors govern cell growth in the heart.
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Braatne, Jeffrey H.; Goater, Lori A.; Blair, Charles L.
2007-01-01
River damming provides a dominant human impact on river environments worldwide, and while local impacts of reservoir flooding are immediate, subsequent ecological impacts downstream can be extensive. In this article, we assess seven research strategies for analyzing the impacts of dams and river flow regulation on riparian ecosystems. These include spatial comparisons of (1) upstream versus downstream reaches, (2) progressive downstream patterns, or (3) the dammed river versus an adjacent free-flowing or differently regulated river(s). Temporal comparisons consider (4) pre- versus post-dam, or (5) sequential post-dam conditions. However, spatial comparisons are complicated by the fact that dams are not randomly located, and temporal comparisons are commonly limited by sparse historic information. As a result, comparative approaches are often correlative and vulnerable to confounding factors. To complement these analyses, (6) flow or sediment modifications can be implemented to test causal associations. Finally, (7) process-based modeling represents a predictive approach incorporating hydrogeomorphic processes and their biological consequences. In a case study of Hells Canyon, the upstream versus downstream comparison is confounded by a dramatic geomorphic transition. Comparison of the multiple reaches below the dams should be useful, and the comparison of Snake River with the adjacent free-flowing Salmon River may provide the strongest spatial comparison. A pre- versus post-dam comparison would provide the most direct study approach, but pre-dam information is limited to historic reports and archival photographs. We conclude that multiple study approaches are essential to provide confident interpretations of ecological impacts downstream from dams, and propose a comprehensive study for Hells Canyon that integrates multiple research strategies. PMID:18043964
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Examining the freezing process of an intermediate bulk containing an industrially relevant protein
Reinsch, Holger; Spadiut, Oliver; Heidingsfelder, Johannes; Herwig, Christoph
2015-01-01
Numerous biopharmaceuticals are produced in recombinant microorganisms in the controlled environment of a bioreactor, a process known as Upstream Process. To minimize product loss due to physico-chemical and enzymatic degradation, the Upstream Process should be directly followed by product purification, known as Downstream Process. However, the Downstream Process can be technologically complex and time-consuming which is why Upstream and Downstream Process usually have to be decoupled temporally and spatially. Consequently, the product obtained after the Upstream Process, known as intermediate bulk, has to be stored. In those circumstances, a freezing procedure is often performed to prevent product loss. However, the freezing process itself is inseparably linked to physico-chemical changes of the intermediate bulk which may in turn damage the product. The present study analysed the behaviour of a Tris-buffered intermediate bulk containing a biopharmaceutically relevant protein during a bottle freezing process. Major damaging mechanisms, like the spatiotemporal redistribution of ion concentrations and pH, and their influence on product stability were investigated. Summarizing, we show the complex events which happen in an intermediate bulk during freezing and explain the different causes for product loss. PMID:25765305
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Quantifying the impact of the Three Gorges Dam on the thermal dynamics of the Yangtze River
NASA Astrophysics Data System (ADS)
Cai, Huayang; Piccolroaz, Sebastiano; Huang, Jingzheng; Liu, Zhiyong; Liu, Feng; Toffolon, Marco
2018-05-01
This study examines the impact of the world’s largest dam, the Three Gorges Dam (TGD), on the thermal dynamics of the Yangtze River (China). The analysis uses long-term observations of river water temperature (RWT) in four stations and reconstructs the RWT that would have occurred in absence of the TGD. Relative to pre-TGD conditions, RWT consistently warmed in the region due to air temperature (AT) increase. In addition, the analysis demonstrates that the TGD significantly affected RWT in the downstream reach. At the closest downstream station (Yichang) to the TGD, the annual cycle of RWT experienced a damped response to AT and a marked seasonal alteration: warming during all seasons except for spring and early summer which were characterized by cooling. Both effects were a direct consequence of the larger thermal inertia of the massive water volume stored in the TGD reservoir, causing the downstream reach to be more thermally resilient. The approach used here to quantify the separate contributions of climate and human interventions on RWT can be used to set scientific guidelines for river management and conservation planning strategies.
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NASA Astrophysics Data System (ADS)
Chavan, Rutuja; Venkataramana, B.; Acharya, Pratik; Kumar, Bimlesh
2018-06-01
The present study examines scour geometry and turbulent flow characteristics around circular and oblong piers in alluvial channel with downward seepage. Experiments were conducted in plane sand bed of non-uniform sand under no seepage, 10% seepage and 15% seepage conditions. Scour depth at oblong pier is significantly lesser than the scour depth at circular one. However, the scour depth at both piers reduces with downward seepage. The measurements show that the velocity and Reynolds stresses are negative near the bed at upstream of piers where the strong reversal occurs. At downstream of oblong pier near the free surface, velocity and Reynolds stresses are less positive; whereas, they are negative at downstream of circular pier. The streamline shape of oblong pier leads to reduce the strength of wake vortices and consequently reversal flow at downstream of pier. With application of downward seepage turbulent kinetic energy is decreasing. The results show that the wake vortices at oblong pier are weaker than the wake vortices at circular pier. The strength of wake vortices diminishes with downward seepage. The Strouhal number is lesser for oblong pier and decreases with downward seepage for both oblong and circular piers.
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Recent advances in next-generation sequencing technology have enabled the unprecedented characterization of a full spectrum of somatic alterations in cancer genomes. Given the large numbers of somatic mutations typically detected by this approach, a key challenge in the downstream analysis is to distinguish “drivers” that functionally contribute to tumorigenesis from “passengers” that occur as the consequence of genomic instability.
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Targeting the eIF4F translation initiation complex: a critical nexus for cancer development.
Pelletier, Jerry; Graff, Jeremy; Ruggero, Davide; Sonenberg, Nahum
2015-01-15
Elevated protein synthesis is an important feature of many cancer cells and often arises as a consequence of increased signaling flux channeled to eukaryotic initiation factor 4F (eIF4F), the key regulator of the mRNA-ribosome recruitment phase of translation initiation. In many cellular and preclinical models of cancer, eIF4F deregulation results in changes in translational efficiency of specific mRNA classes. Importantly, many of these mRNAs code for proteins that potently regulate critical cellular processes, such as cell growth and proliferation, enhanced cell survival and cell migration that ultimately impinge on several hallmarks of cancer, including increased angiogenesis, deregulated growth control, enhanced cellular survival, epithelial-to-mesenchymal transition, invasion, and metastasis. By being positioned as the molecular nexus downstream of key oncogenic signaling pathways (e.g., Ras, PI3K/AKT/TOR, and MYC), eIF4F serves as a direct link between important steps in cancer development and translation initiation. Identification of mRNAs particularly responsive to elevated eIF4F activity that typifies tumorigenesis underscores the critical role of eIF4F in cancer and raises the exciting possibility of developing new-in-class small molecules targeting translation initiation as antineoplastic agents. ©2014 American Association for Cancer Research.
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Code of Federal Regulations, 2011 CFR
2011-07-01
... to motor vehicle diesel fuel downstream of the refinery or importer? 80.524 Section 80.524 Protection... FUELS AND FUEL ADDITIVES Motor Vehicle Diesel Fuel; Nonroad, Locomotive, and Marine Diesel Fuel; and ECA Marine Fuel Motor Vehicle Diesel Fuel Standards and Requirements § 80.524 What sulfur content standard...
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Code of Federal Regulations, 2010 CFR
2010-07-01
... to motor vehicle diesel fuel downstream of the refinery or importer? 80.524 Section 80.524 Protection... FUELS AND FUEL ADDITIVES Motor Vehicle Diesel Fuel; Nonroad, Locomotive, and Marine Diesel Fuel; and ECA Marine Fuel Motor Vehicle Diesel Fuel Standards and Requirements § 80.524 What sulfur content standard...
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A novel virtual hub approach for multisource downstream service integration
NASA Astrophysics Data System (ADS)
Previtali, Mattia; Cuca, Branka; Barazzetti, Luigi
2016-08-01
A large development of downstream services is expected to be stimulated starting from earth observations (EO) datasets acquired by Copernicus satellites. An important challenge connected with the availability of downstream services is the possibility for their integration in order to create innovative applications with added values for users of different categories level. At the moment, the world of geo-information (GI) is extremely heterogeneous in terms of standards and formats used, thus preventing a facilitated access and integration of downstream services. Indeed, different users and data providers have also different requirements in terms of communication protocols and technology advancement. In recent years, many important programs and initiatives have tried to address this issue even on trans-regional and international level (e.g. INSPIRE Directive, GEOSS, Eye on Earth and SEIS). However, a lack of interoperability between systems and services still exists. In order to facilitate the interaction between different downstream services, a new architectural approach (developed within the European project ENERGIC OD) is proposed in this paper. The brokering-oriented architecture introduces a new mediation layer (the Virtual Hub) which works as an intermediary to bridge the gaps linked to interoperability issues. This intermediation layer de-couples the server and the client allowing a facilitated access to multiple downstream services and also Open Data provided by national and local SDIs. In particular, in this paper an application is presented integrating four services on the topic of agriculture: (i) the service given by Space4Agri (providing services based on MODIS and Landsat data); (ii) Gicarus Lab (providing sample services based on Landsat datasets) and (iii) FRESHMON (providing sample services for water quality) and services from a several regional SDIs.
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The HMDS Coating Flaw Removal Tool
DOE Office of Scientific and Technical Information (OSTI.GOV)
Monticelli, M V; Nostrand, M C; Mehta, N
2008-10-24
In many high energy laser systems, optics with HMDS sol gel antireflective coatings are placed in close proximity to each other making them particularly susceptible to certain types of strong optical interactions. During the coating process, halo shaped coating flaws develop around surface digs and particles. Depending on the shape and size of the flaw, the extent of laser light intensity modulation and consequent probability of damaging downstream optics may increase significantly. To prevent these defects from causing damage, a coating flaw removal tool was developed that deploys a spot of decane with a syringe and dissolves away the coatingmore » flaw. The residual liquid is evacuated leaving an uncoated circular spot approximately 1mm in diameter. The resulting uncoated region causes little light intensity modulation and thus has a low probability of causing damage in optics downstream from the mitigated flaw site.« less
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Adaptation disrupts motion integration in the primate dorsal stream
Patterson, Carlyn A.; Wissig, Stephanie C.; Kohn, Adam
2014-01-01
Summary Sensory systems adjust continuously to the environment. The effects of recent sensory experience—or adaptation—are typically assayed by recording in a relevant subcortical or cortical network. However, adaptation effects cannot be localized to a single, local network. Adjustments in one circuit or area will alter the input provided to others, with unclear consequences for computations implemented in the downstream circuit. Here we show that prolonged adaptation with drifting gratings, which alters responses in the early visual system, impedes the ability of area MT neurons to integrate motion signals in plaid stimuli. Perceptual experiments reveal a corresponding loss of plaid coherence. A simple computational model shows how the altered representation of motion signals in early cortex can derail integration in MT. Our results suggest that the effects of adaptation cascade through the visual system, derailing the downstream representation of distinct stimulus attributes. PMID:24507198
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Mortality of zebra mussel, Dreissena polymorpha, veligers during downstream transport
Horvath, T.G.; Lamberti, G.A.
1999-01-01
1. Streams flowing from lakes which contain zebra mussels, Dreissena polymorpha, provide apparently suitable habitats for mussel colonization and downstream range expansion, yet most such streams contain few adult mussels. We postulated that mussel veligers experience high mortality during dispersal via downstream transport. They tested this hypothesis in Christiana Creek, a lake-outlet stream in south-western Michigan, U.S.A., in which adult mussel density declined exponentially with distance downstream. 2. A staining technique using neutral red was developed and tested to distinguish quickly live and dead veligers. Live and dead veligers were distinguishable after an exposure of fresh samples to 13.3 mg L-1 of neutral red for 3 h. 3. Neutral red was used to determine the proportion of live veligers in samples taken longitudinally along Christiana Creek. The proportion of live veligers (mean ?? SE) declined from 90 ?? 3% at the lake outlet to 40 ?? 8% 18 km downstream. 4. Veligers appear to be highly susceptible to damage by physical forces (e.g. shear), and therefore, mortality in turbulent streams could be an important mechanism limiting zebra mussel dispersal to downstream reaches. Predictions of zebra mussel spread and population growth should consider lake-stream linkages and high mortality in running waters.
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Depression and Political Participation*
Ojeda, Christopher
2015-01-01
In this paper, I propose that depression is a political phenomenon insofar as it has political sources and consequences. I then investigate one aspect of this argument—whether depression reduces participation. I hypothesize that individuals with depression lack the motivation and physical capacity to vote and engage in other forms of political participation due to somatic problems and feelings of hopelessness and apathy. Moreover, I examine how depression in adolescence can have downstream consequences for participation in young adulthood. The analyses, using both cross-sectional and longitudinal data, show that voter turnout and other forms of participation decrease as the severity of depressed mood increases. These findings are discussed in light of disability rights and potential efforts to boost participation among this group. PMID:26924857
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NASA Astrophysics Data System (ADS)
Baxter, C.; Rowan, J. S.; McKenzie, B. M.; Neilson, R.
2013-04-01
Soil is a key asset of natural capital, providing a myriad of goods and ecosystem services that sustain life through regulating, supporting and provisioning roles, delivered by chemical, physical and biological processes. One of the greatest threats to soil is accelerated erosion, which raises a natural process to unsustainable levels, and has downstream consequences (e.g. economic, environmental and social). Global intensification of agroecosystems is a major cause of soil erosion which, in light of predicted population growth and increased demand for food security, will continue or increase. Elevated erosion and transport is common in agroecosystems and presents a multi-disciplinary problem with direct physical impacts (e.g. soil loss), other less tangible impacts (e.g. loss of ecosystem productivity), and indirect downstream effects that necessitate an integrated approach to effectively address the problem. Climate is also likely to increase susceptibility of soil to erosion. Beyond physical response, the consequences of erosion on soil biota have hitherto been ignored, yet biota play a fundamental role in ecosystem service provision. To our knowledge few studies have addressed the gap between erosion and consequent impacts on soil biota. Transport and redistribution of soil biota by erosion is poorly understood, as is the concomitant impact on biodiversity and ability of soil to deliver the necessary range of ecosystem services to maintain function. To investigate impacts of erosion on soil biota a two-fold research approach is suggested. Physical processes involved in redistribution should be characterised and rates of transport and redistribution quantified. Similarly, cumulative and long-term impacts of biota erosion should be considered. Understanding these fundamental aspects will provide a basis upon which mitigation strategies can be considered.
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Dalle, Stéphane; Ravier, Magalie A; Bertrand, Gyslaine
2011-03-01
Defective insulin secretion is a feature of type 2 diabetes that results from inadequate compensatory increase in β-cell mass, decreased β-cell survival and impaired glucose-dependent insulin release. Pancreatic β-cell proliferation, survival and secretion are thought to be regulated by signalling pathways linked to G-protein coupled receptors (GPCRs), such as the glucagon-like peptide-1 (GLP-1) and the pituitary adenylate cyclase-activating polypeptide (PACAP) receptors. β-arrestin-1 serves as a multifunctional adaptor protein that mediates receptor desensitization, receptor internalization, and links GPCRs to downstream pathways such as tyrosine kinase Src, ERK1/2 or Akt/PKB. Importantly, recent studies found that β-arrestin-1 mediates GLP-1 signalling to insulin secretion, GLP-1 antiapoptotic effect by phosphorylating the proapoptotic protein Bad through ERK1/2 activation, and PACAP potentiation of glucose-induced long-lasting ERK1/2 activation controlling IRS-2 expression. Together, these novel findings reveal an important functional role for β-arrestin-1 in the regulation of insulin secretion and β-cell survival by GPCRs. Copyright © 2010 Elsevier Inc. All rights reserved.
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Functional characterization of PhGR and PhGRL1 during flower senescence in the petunia.
Yang, Weiyuan; Liu, Juanxu; Tan, Yinyan; Zhong, Shan; Tang, Na; Chen, Guoju; Yu, Yixun
2015-09-01
Petunia PhGRL1 suppression accelerated flower senescence and increased the expression of the genes downstream of ethylene signaling, whereas PhGR suppression did not. Ethylene plays an important role in flowers senescence. Homologous proteins Green-Ripe and Reversion to Ethylene sensitivity1 are positive regulators of ethylene responses in tomato and Arabidopsis, respectively. The petunia flower has served as a model for the study of ethylene response during senescence. In this study, petunia PhGR and PhGRL1 expression was analyzed in different organs, throughout floral senescence, and after exogenous ethylene treatment; and the roles of PhGR and PhGRL1 during petunia flower senescence were investigated. PhGRL1 suppression mediated by virus-induced gene silencing accelerated flower senescence and increased ethylene production; however, the suppression of PhGR did not. Taken together, these data suggest that PhGRL1 is involved in negative regulation of flower senescence, possibly via ethylene production inhibition and consequently reduced ethylene signaling activation.
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Rothman, Naomi B; Magee, Joe C
2016-01-01
Our findings draw attention to the interpersonal communication function of a relatively unexplored dimension of emotions-the level of social engagement versus disengagement. In four experiments, regardless of valence and target group gender, observers infer greater relational well-being (more cohesiveness and less conflict) between group members from socially engaging (sadness and appreciation) versus disengaging (anger and pride) emotion expressions. Supporting our argument that social (dis)engagement is a critical dimension communicated by these emotions, we demonstrate (1) that inferences about group members' self-interest mediate the effect of socially engaging emotions on cohesiveness and (2) that the influence of socially disengaging emotion expressions on inferences of conflict is attenuated when groups have collectivistic norms (i.e., members value a high level of social engagement). Furthermore, we show an important downstream consequence of these inferences of relational well-being: Groups that seem less cohesive because of their members' proud (versus appreciative) expressions are also expected to have worse task performance.
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Stigma by Prejudice Transfer: Racism Threatens White Women and Sexism Threatens Men of Color.
Sanchez, Diana T; Chaney, Kimberly E; Manuel, Sara K; Wilton, Leigh S; Remedios, Jessica D
2017-04-01
In the current research, we posited the stigma-by-prejudice-transfer effect, which proposes that stigmatized group members (e.g., White women) are threatened by prejudice that is directed at other stigmatized group members (e.g., African Americans) because they believe that prejudice has monolithic qualities. While most stigma researchers assume that there is a direct correspondence between the attitude of prejudiced individuals and the targets (i.e., sexism affects women, racism affects racial minorities), the five studies reported here demonstrate that White women can be threatened by racism (Study 1, 3, 4, and 5) and men of color by sexism (Study 2). Robust to perceptions of liking and the order in which measures were administered, results showed that prejudice transfers between racism and sexism were driven by the presumed social dominance orientation of the prejudiced individual. In addition, important downstream consequences, such as the increased likelihood of anticipated stigma, expectations of unfair treatment, and the attribution of negative feedback to sexism, appeared for stigmatized individuals.
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Deszcz-Pan, Maria; Rodriguez, B.D.; Doucette, J.P.; Godbout, Michel; Williams, J.M.; Sawyer, D.A.; Stone, B.D.; Grauch, V.J.
2000-01-01
The Albuquerque-Santa Fe region is rapidly growing. The Santa Fe Group aquifer in the Middle Rio Grande Basin (MRGB) is the main source of municipal water for the greater Albuquerque metropolitan area and is more limited than previously thought (Thorn et al., 1993). The MRGB, as defined hydrologically and used here, is the area within the Rio Grande Valley extending from Cochiti Dam downstream to the community of San Acacia (Figure 1). Because approximately 600,000 people (40 percent of the population of New Mexico) live in the study area (Bartolino, 1999), water shortfalls could have serious consequences for the state. Future growth and land management in the region depends on accurate assessment and protection of the region’s groundwater resources. An important issue in understanding the ground water resources is a better understanding of the hydrogeology of the Santa Fe Group, the sedimentary deposits that fill the Rio Grande rift and contain the principal groundwater aquifers.
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Magnetotelluric data in the middle Rio Grande basin, Albuquerque volcanoes, New Mexico
Williams, Jackie M.; Rodriguez, Brian D.
2002-01-01
The population in the Albuquerque-Santa Fe region of New Mexico is rapidly growing. The Santa Fe Group aquifer in the Middle Rio Grande Basin is the main source of municipal water for the greater Albuquerque metropolitan area. The capacity of this aquifer is more limited than previously thought (Thorn et al., 1993). The Middle Rio Grande Basin, as defined hydrologically and used here, is the area within the Rio Grande Valley extending from Cochiti Dam downstream to the community of San Acacia (Figure 1). Because approximately 600,000 people (40 percent of the population of New Mexico) live in the study area (Bartolino, 1999), water shortfalls could have serious consequences. Future growth and land management in the region depends on accurate assessment and protection of the region’s groundwater resources. An important issue in defining the ground water resources is a better understanding of the hydrogeology of the Santa Fe Group and the other sedimentary deposits that fill the Rio Grande rift.
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Recent advances in next-generation sequencing technology have enabled the unprecedented characterization of a full spectrum of somatic alterations in cancer genomes. Given the large numbers of somatic mutations typically detected by this approach, a key challenge in the downstream analysis is to distinguish “drivers” that functionally contribute to tumorigenesis from “passengers” that occur as the consequence of genomic instability.
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Boone, Deborah R; Leek, Jeanna M; Falduto, Michael T; Torres, Karen E O; Sell, Stacy L; Parsley, Margaret A; Cowart, Jeremy C; Uchida, Tatsuo; Micci, Maria-Adelaide; DeWitt, Douglas S; Prough, Donald S; Hellmich, Helen L
2017-01-01
Virally mediated RNA interference (RNAi) to knock down injury-induced genes could improve functional outcome after traumatic brain injury (TBI); however, little is known about the consequences of gene knockdown on downstream cell signaling pathways and how RNAi influences neurodegeneration and behavior. Here, we assessed the effects of adeno-associated virus (AAV) siRNA vectors that target two genes with opposing roles in TBI pathogenesis: the allegedly detrimental neuronal nitric oxide synthase (nNOS) and the potentially protective glutathione peroxidase 1 (GPx-1). In rat hippocampal progenitor cells, three siRNAs that target different regions of each gene (nNOS, GPx-1) effectively knocked down gene expression. However, in vivo, in our rat model of fluid percussion brain injury, the consequences of AAV-siRNA were variable. One nNOS siRNA vector significantly reduced the number of degenerating hippocampal neurons and showed a tendency to improve working memory. GPx-1 siRNA treatment did not alter TBI-induced neurodegeneration or working memory deficits. Nevertheless, microarray analysis of laser captured, virus-infected neurons showed that knockdown of nNOS or GPx-1 was specific and had broad effects on downstream genes. Since nNOS knockdown only modestly ameliorated TBI-induced working memory deficits, despite widespread genomic changes, manipulating expression levels of single genes may not be sufficient to alter functional outcome after TBI.
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Adelman, Robert Mark; Herrmann, Sarah D; Bodford, Jessica E; Barbour, Joseph E; Graudejus, Oliver; Okun, Morris A; Kwan, Virginia S Y
2017-06-01
This research examined the function of future self-continuity and its potential downstream consequences for academic performance through relations with other temporal psychological factors and self-control. We also addressed the influence of cultural factors by testing whether these relations differed by college generation status. Undergraduate students enrolled at a large public university participated in two studies (Study 1: N = 119, M age = 20.55, 56.4% women; Study 2: N = 403, M age = 19.83, 58.3% women) in which they completed measures of temporal psychological factors and psychological resources. In Study 2, we also obtained academic records to link responses to academic performance. Future self-continuity predicted subsequent academic performance and was related positively to future focus, negatively to present focus, and positively to self-control. Additionally, the relation between future focus and self-control was stronger for continuing-generation college students than first-generation college students. Future self-continuity plays a pivotal role in academic contexts. Findings suggest that it may have positive downstream consequences on academic achievement by directing attention away from the present and toward the future, which promotes self-control. Further, the strategy of focusing on the future may be effective in promoting self-control only for certain cultural groups. © 2016 Wiley Periodicals, Inc.
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Effects of cytosine methylation on transcription factor binding sites
2014-01-01
Background DNA methylation in promoters is closely linked to downstream gene repression. However, whether DNA methylation is a cause or a consequence of gene repression remains an open question. If it is a cause, then DNA methylation may affect the affinity of transcription factors (TFs) for their binding sites (TFBSs). If it is a consequence, then gene repression caused by chromatin modification may be stabilized by DNA methylation. Until now, these two possibilities have been supported only by non-systematic evidence and they have not been tested on a wide range of TFs. An average promoter methylation is usually used in studies, whereas recent results suggested that methylation of individual cytosines can also be important. Results We found that the methylation profiles of 16.6% of cytosines and the expression profiles of neighboring transcriptional start sites (TSSs) were significantly negatively correlated. We called the CpGs corresponding to such cytosines “traffic lights”. We observed a strong selection against CpG “traffic lights” within TFBSs. The negative selection was stronger for transcriptional repressors as compared with transcriptional activators or multifunctional TFs as well as for core TFBS positions as compared with flanking TFBS positions. Conclusions Our results indicate that direct and selective methylation of certain TFBS that prevents TF binding is restricted to special cases and cannot be considered as a general regulatory mechanism of transcription. PMID:24669864
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Woller, Sarah A.; Huie, J. Russell; Hartman, John J.; Hook, Michelle A.; Miranda, Rajesh C.; Huang, Yung-Jen; Ferguson, Adam R.; Grau, James W.
2014-01-01
We previously showed that peripheral noxious input after spinal cord injury (SCI) inhibits beneficial spinal plasticity and impairs recovery of locomotor and bladder functions. These observations suggest that noxious input may similarly affect the development and maintenance of chronic neuropathic pain, an important consequence of SCI. In adult rats with a moderate contusion SCI, we investigated the effect of noxious tail stimulation, administered one day after SCI, on mechanical withdrawal responses to von Frey stimuli from 1 to 28 days, post-treatment. In addition, because the pro-inflammatory cytokine tumor necrosis factor α (TNFα) is implicated in numerous injury-induced processes including pain hypersensitivity, we assessed the temporal and spatial expression of TNFα, TNF receptors, and several downstream signaling targets after stimulation. Our results showed that unlike sham surgery or SCI only, nociceptive stimulation following SCI induced mechanical sensitivity by 24 hours. These behavioral changes were accompanied by increased expression of TNFα. Cellular assessments of downstream targets of TNFα revealed that nociceptive stimulation increased the expression of caspase 8 and the active subunit (12 kDa) of caspase 3 at a time point consistent with the onset of mechanical allodynia, indicative of active apoptosis. In addition, immunohistochemical analysis revealed distinct morphological signs of apoptosis in neurons and microglia at 24 hours post-stimulation. Interestingly, expression of the inflammatory mediator NFκB was unaltered by nociceptive stimulation. These results suggest that noxious input caudal to the level of SCI can increase the onset and expression of behavioral responses indicative of pain, potentially involving TNFα signaling. PMID:25180012
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Minireview: More Than Just a Hammer: Ligand “Bias” and Pharmaceutical Discovery
2014-01-01
Conventional orthosteric drug development programs targeting G protein-coupled receptors (GPCRs) have focused on the concepts of agonism and antagonism, in which receptor structure determines the nature of the downstream signal and ligand efficacy determines its intensity. Over the past decade, the emerging paradigms of “pluridimensional efficacy” and “functional selectivity” have revealed that GPCR signaling is not monolithic, and that ligand structure can “bias” signal output by stabilizing active receptor states in different proportions than the native ligand. Biased ligands are novel pharmacologic entities that possess the unique ability to qualitatively change GPCR signaling, in effect creating “new receptors” with distinct efficacy profiles driven by ligand structure. The promise of biased agonism lies in this ability to engender “mixed” effects not attainable using conventional agonists or antagonists, promoting therapeutically beneficial signals while antagonizing deleterious ones. Indeed, arrestin pathway-selective agonists for the type 1 parathyroid hormone and angiotensin AT1 receptors, and G protein pathway-selective agonists for the GPR109A nicotinic acid and μ-opioid receptors, have demonstrated unique, and potentially therapeutic, efficacy in cell-based assays and preclinical animal models. Conversely, activating GPCRs in “unnatural” ways may lead to downstream biological consequences that cannot be predicted from prior knowledge of the actions of the native ligand, especially in the case of ligands that selectively activate as-yet poorly characterized G protein-independent signaling networks mediated via arrestins. Although much needs to be done to realize the clinical potential of functional selectivity, biased GPCR ligands nonetheless appear to be important new additions to the pharmacologic toolbox. PMID:24433041
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Modeling of the Contaminated Sediment in the Erft River
NASA Astrophysics Data System (ADS)
Hu, Wei; Westrich, Bernhard; Rode, Michael
2010-05-01
Sediment transport processes play an important role in the surface water systems coupled with rainfall-runoff and contaminant transport. Pollutants like heavy metals adsorbed mainly by fine sediment particles can be deposited, eroded or transported further downstream. When the toxic pollutants deposited before and covered by cleaner sediment are remobilized by large flow events such as floods, they pose a hidden threat to the human health and environment. In the Erft River, due to mining activities in the past, the heavy metals release from the tributary Veybach on the downstream water and sediment quality is significant. Recent measurements prove the decreasing concentration trend of heavy metals in the river bed sediment from the Veybach. One-dimensional hydrodynamic model COSMOS is used to model the complicated water flow, sediment erosion, deposition and contaminant mixing and transport in the mainstream of the Erft River. It is based on a finite-difference formulation and consists of one-dimensional, unsteady sub-model of flow and transport, coupled with a sub-model of the layered sediment bed. The model accounts for the following governing physical-chemical processes: convective and dispersive transport, turbulent mixing deposited sediment surface, deposition, consolidation, aging and erosion of sediment, adsorption-desorption of pollutants to suspended particles and losses of pollutants due to decay or volatilization. The results reproduce the decreasing profile of the pollutant concentration in the river bed sediment nicely. Further modeling is to analysis the influence of the mixing process at the water-riverbed interface on the contaminant transport, hydrological scenarios impact on the remobilization of the sink of pollutant and its negative consequences on the river basin.
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Foxo Transcription Factors Blunt Cardiac Hypertrophy by Inhibiting Calcineurin Signaling
Ni, Yan G.; Berenji, Kambeez; Wang, Na; Oh, Misook; Sachan, Nita; Dey, Asim; Cheng, Jun; Lu, Guangrong; Morris, David J.; Castrillon, Diego H.; Gerard, Robert D.; Rothermel, Beverly A.; Hill, Joseph A.
2014-01-01
Background Cellular hypertrophy requires coordinated regulation of progrowth and antigrowth mechanisms. In cultured neonatal cardiomyocytes, Foxo transcription factors trigger an atrophy-related gene program that counters hypertrophic growth. However, downstream molecular events are not yet well defined. Methods and Results Here, we report that expression of either Foxo1 or Foxo3 in cardiomyocytes attenuates calcineurin phosphatase activity and inhibits agonist-induced hypertrophic growth. Consistent with these results, Foxo proteins decrease calcineurin phosphatase activity and repress both basal and hypertrophic agonist-induced expression of MCIP1.4, a direct downstream target of the calcineurin/NFAT pathway. Furthermore, hearts from Foxo3-null mice exhibit increased MCIP1.4 abundance and a hypertrophic phenotype with normal systolic function at baseline. Together, these results suggest that Foxo proteins repress cardiac growth at least in part through inhibition of the calcineurin/NFAT pathway. Given that hypertrophic growth of the heart occurs in multiple contexts, our findings also suggest that certain hypertrophic signals are capable of overriding the antigrowth program induced by Foxo. Consistent with this, multiple hypertrophic agonists triggered inactivation of Foxo proteins in cardiomyocytes through a mechanism requiring the PI3K/Akt pathway. In addition, both Foxo1 and Foxo3 are phosphorylated and consequently inactivated in hearts undergoing hypertrophic growth induced by hemodynamic stress. Conclusions This study suggests that inhibition of the calcineurin/NFAT signaling cascade by Foxo and release of this repressive action by the PI3K/Akt pathway are important mechanisms whereby Foxo factors govern cell growth in the heart. PMID:16952979
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NASA Astrophysics Data System (ADS)
Mount, N. J.; Sambrook Smith, G. H.; Stott, T. A.
2005-01-01
Upland afforestation in the UK was the largest rural land-use change last century. As a consequence, the bed load yields of upland catchments increased substantially. Circumstantial evidence suggests that, when this increased load reaches the lowland catchment, it is deposited, triggering flow diversion and channel instability. However, despite the widespread adoption of this theory, it remains to be properly tested. This paper uses aerial photograph analysis and contemporary channel digital terrain models (DTMs) to assess this concept on the Afon Trannon, mid-Wales, the upper catchment of which was afforested between 1948 and 1978. Construction of a sediment budget demonstrates that upland catchment bed load yields are only equivalent to localized inputs of gravel from bank erosion and are therefore unlikely to be totally responsible for producing the high rates of channel change observed in some lowland reaches. Channel instability appears to be more related to the nature of the local bank input as those reaches where gravel is not present in the bank material are stable. Additionally, flood magnitude and frequency are shown to have increased since 1988, a factor of at least equal importance to that of bed load yields from either upland catchments or local bank erosion. It is concluded that, in contrast to previous work, afforestation in the uplands has only a minor influence on downstream reaches of the Afon Trannon. Situations where upland afforestation may have a greater impact on downstream reaches are discussed and the implications for best management practice explored.
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Controls on the abruptness of gravel-sand transitions
NASA Astrophysics Data System (ADS)
Venditti, J. G.; Church, M. A.; Lamb, M. P.; Domarad, N.; Rennie, C. D.
2014-12-01
As gravel-bedded rivers fine downstream, they characteristically exhibit an abrupt transition from gravel- to sand-bed. This is the only abrupt transition in grain-size that occurs in the fluvial system and has attracted considerable attention. A number of competing theories have been proposed to account for the abruptness of the transition, including base-level control, attrition of ~10mm gravel to produce sand, and sediment sorting processes. The prevailing theory for the emergence of abrupt transitions is size selective sorting of bimodal sediment wherein gravel deposits due to downstream declining shear stress, fining the bedload until a sand-bed emerges. We explored this hypothesis by examining grain-size, shear stress, gravel mobility and sand suspension thresholds through the gravel-sand transition (GST) of the Fraser River, British Columbia. The Fraser GST is an arrested gravel wedge with patches of gravel downstream of the wedge forming a diffuse extension. There is an abrupt change in bed slope through the transition that leads to an abrupt change in shear stress. The GST, bed-slope change and backwater caused by the ocean are all coincident spatially, which enhances the sharpness of the GST. Interestingly, the bimodal reach of the river occurs downstream of the GST and exhibits no downstream gradients in shear stress, suspended sediment flux, gravel mobility or sand suspension thresholds. This calls into question the prevailing theory for the emergence of an abrupt GST by size selective sorting. We provide evidence, both empirical and theoretical, that suggests the emergence of an abrupt GST is caused by rapid deposition of sand when fine gravel deposits. We argue that the emergence of gravel-sand transitions is a consequence of gravel-bedded rivers adopting a steeper slope than sand-bedded rivers. The abruptness arises because the bed slope required to convey the gravel load fixes the distal location of a terminal gravel wedge, and once the river has lost the capacity to carry the gravel mixture, the river adopts the lower slope required to pass the sand load. Progressive downstream fining of a gravel-sand mixture is not a necessary condition for the emergence of a gravel-sand transition.
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NASA Astrophysics Data System (ADS)
Halloran, Siobhan; Ristenpart, William
2013-11-01
Virologists and other researchers who test pathogens for airborne disease transmissibility often place a test animal downstream from an inoculated animal and later determine whether the test animal became infected. Despite the crucial role of the airflow in pathogen transmission between the animals, to date the infectious disease community has paid little attention to the effect of airspeed or turbulent intensity on the probability of transmission. Here we present measurements of the turbulent dispersivity under conditions relevant to experimental tests of airborne disease transmissibility between laboratory animals. We used time lapse photography to visualize the downstream transport and turbulent dispersion of smoke particulates released from a point source downstream of an axial fan, thus mimicking the release and transport of expiratory aerosols exhaled by an inoculated animal. We show that for fan-generated turbulence the plume width is invariant with the mean airspeed and, close to the point source, increases linearly with downstream position. Importantly, the turbulent dispersivity is insensitive to the presence of meshes placed downstream from the point source, indicating that the fan length scale dictates the turbulent intensity and corresponding dispersivity.
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Castro-Santos, Theodore; Letcher, Benjamin H.
2010-01-01
We present a simulation model in which individual adult migrant American shad (Alosa sapidissima) ascend the Connecticut River and spawn, and survivors return to the marine environment. Our approach synthesizes bioenergetics, reproductive biology, and behavior to estimate the effects of migratory distance and delays incurred at dams on spawning success and survival. We quantified both the magnitude of effects and the consequences of uncertainty in the estimates of input variables. Behavior, physiology, and energetics strongly affected both the distribution of spawning effort and survival to the marine environment. Delays to both upstream and downstream movements had dramatic effects on spawning success, determining total fecundity and spatial extent of spawning. Delays, combined with cues for migratory reversal, also determined the likelihood of survival. Spawning was concentrated in the immediate vicinity of dams and increased with greater migratory distance and delays to downstream migration. More research is needed on reproductive biology, behavior, energetics, and barrier effects to adequately understand the interplay of the various components of this model; it does provide a framework, however, that suggests that provision of upstream passage at dams in the absence of expeditious downstream passage may increase spawning success — but at the expense of reduced iteroparity.
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Ecological risk assessment of cheese whey effluents along a medium-sized river in southwest Greece.
Karadima, Constantina; Theodoropoulos, Chris; Rouvalis, Angela; Iliopoulou-Georgudaki, Joan
2010-01-01
An ecological risk assessment of cheese whey effluents was applied in three critical sampling sites located in Vouraikos river (southwest Greece), while ecological classification using Water Framework Directive 2000/60/EU criteria allowed a direct comparison of toxicological and ecological data. Two invertebrates (Daphnia magna and Thamnocephalus platyurus) and the zebra fish Danio rerio were used for toxicological analyses, while the aquatic risk was calculated on the basis of the risk quotient (RQ = PEC/PNEC). Chemical classification of sites was carried out using the Nutrient Classification System, while benthic invertebrates were collected and analyzed for biological classification. Toxicological results revealed the heavy pollution load of the two sites, nearest to the point pollution source, as the PEC/PNEC ratio exceeded 1.0, while unexpectedly, no risk was detected for the most downstream site, due to the consequent interference of the riparian flora. These toxicological results were in agreement with the ecological analysis: the ecological quality of the two heavily impacted sites ranged from moderate to bad, whereas it was found good for the most downstream site. The results of the study indicate major ecological risk for almost 15 km downstream of the point pollution source and the potentiality of the water quality remediation by the riparian vegetation, proving the significance of its maintenance.
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NASA Astrophysics Data System (ADS)
Serran, J.; Creed, I. F.
2014-12-01
Geographically isolated wetlands (GIWs) from the prairie pothole region of North America are particularly vulnerable to loss and increasing urban, agricultural, and natural resource development pressures continue to place these wetlands at risk. Although small in area and low in surface hydrologic connectivity, GIWs provide important functions such as flood control and water purification and their loss has been recognized as a contributing factor to the eutrophication of Lake Winnipeg. Within Canada, GIW loss can be attributed to the lack of high-resolution wetland inventories and the lack of information about historic wetland loss rates. In this study, we tested an approach to estimate GIW loss by improving their detection and delineation. To initialize our work, a high-resolution wetland inventory was created using a novel approach that fuses LiDAR data (probability of wetland) with aerial photographs (to distinguish open water and wet meadow) for the Beaverhill watershed, a major tributary of the North Saskatchewan watershed. Our wetland mapping results validated our ability to detect wetlands on the landscape. Secondly, we applied a power law area-frequency function to an aerial photograph time series spanning the watershed's natural climate variation range (1960 to present) to estimate historic wetland loss, with historic wetland loss determined via a break in slope in the power law function. Our analysis revealed ongoing loss of small GIWs in the watershed, despite the implementation of wetland policy measures to mitigate this loss. This ongoing GIW loss is particularly detrimental as it is concomitant with a loss in the important associated ecosystem functions of these GIWs, which has serious repercussions for downstream waters. Overall, our findings support a shift in wetland policies from area to function assessments that provide governments with tools to manage the potential consequences of wetland loss in terms of increased flooding and pollution of downstream waters.
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Adeogun, Aina O; Chukwuka, Azubuike V; Okoli, Chukwunonso P; Arukwe, Augustine
2016-01-01
The distributions of polychlorinated biphenyl (PCB) congeners were determined in sediment and muscle of the African sharptooth catfish (Clarias gariepinus) from the Ogun and Ona rivers, southwest Nigeria. In addition, the effect of PCB congeners on condition factor (CF) and associated human health risk was assessed using muscle levels for a noncarcinogenic hazard quotient (HQ) calculation. Elevated concentrations of high-molecular-weight (HMW) PCB congeners were detected in sediment and fish downstream of discharge points of both rivers. A significant reduction in fish body weight and CF was observed to correlate with high PCB congener concentrations in the Ona River. A principal component (PC) biplot revealed significant site-related PCB congener distribution patterns for HMW PCB in samples from the Ogun River (71.3%), while the Ona River (42.6%) showed significant PCB congener patterns for low-molecular-weight (LMW) congeners. Biota-sediment accumulation factor (BSAF) was higher downstream for both rivers, presenting PCB congener-specific accumulation patterns in the Ona River. Significant decreases in fish body weight, length and CF were observed downstream compared to upstream in the Ona River. The non-carcinogenic HQ of dioxin-like congener 189 downstream in both rivers exceeded the HQ = 1 threshold for children and adults for both the Ogun and Ona rivers. Overall, our results suggest that industrial discharges contribute significantly to PCB inputs into these rivers, with potential for significant health implications for neighboring communities that utilize these rivers for fishing and other domestic purposes.
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Bravo, Andrea G; Loizeau, Jean-Luc; Dranguet, Perrine; Makri, Stamatina; Björn, Erik; Ungureanu, Viorel Gh; Slaveykova, Vera I; Cosio, Claudia
2016-06-01
Chlor-alkali plants using mercury (Hg) cell technology are acute point sources of Hg pollution in the aquatic environment. While there have been recent efforts to reduce the use of Hg cells, some of the emitted Hg can be transformed to neurotoxic methylmercury (MeHg). Here, we aimed (i) to study the dispersion of Hg in four reservoirs located downstream of a chlor-alkali plant along the Olt River (Romania) and (ii) to track the activity of bacterial functional genes involved in Hg methylation. Total Hg (THg) concentrations in water and sediments decreased successively from the initial reservoir to downstream reservoirs. Suspended fine size particles and seston appeared to be responsible for the transport of THg into downstream reservoirs, while macrophytes reflected the local bioavailability of Hg. The concentration and proportion of MeHg were correlated with THg, but were not correlated with bacterial activity in sediments, while the abundance of hgcA transcript correlated with organic matter and Cl(-) concentration, indicating the importance of Hg bioavailability in sediments for Hg methylation. Our data clearly highlights the importance of considering Hg contamination as a legacy pollutant since there is a high risk of continued Hg accumulation in food webs long after Hg-cell phase out.
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Extraction and purification methods in downstream processing of plant-based recombinant proteins.
Łojewska, Ewelina; Kowalczyk, Tomasz; Olejniczak, Szymon; Sakowicz, Tomasz
2016-04-01
During the last two decades, the production of recombinant proteins in plant systems has been receiving increased attention. Currently, proteins are considered as the most important biopharmaceuticals. However, high costs and problems with scaling up the purification and isolation processes make the production of plant-based recombinant proteins a challenging task. This paper presents a summary of the information regarding the downstream processing in plant systems and provides a comprehensible overview of its key steps, such as extraction and purification. To highlight the recent progress, mainly new developments in the downstream technology have been chosen. Furthermore, besides most popular techniques, alternative methods have been described. Copyright © 2015 Elsevier Inc. All rights reserved.
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NASA Astrophysics Data System (ADS)
Rosskopf, Carmen Maria; Scorpio, Vittoria; Calabrese, Valentina; Frate, Ludovico; Loy, Anna; Stanisci, Angela
2017-04-01
The Fortore River, as many other rivers in Italy, has experienced huge channel adjustments during the last 60 years that were mainly caused by anthropic interventions, especially in-channel mining and the closure of the Occhito dam in 1966. Such changes deeply modified extension and morphological characteristics of the river corridor and, consequently, also its ecological features. The present study aims to better understand the relationships between channel adjustments and river corridor vegetation changes and those between morphological features and environmental quality of the present-day river corridor. The study has been carried out by means of a multi-temporal GIS analysis of topographic maps and aerial photographs integrated with topographic, geomorphological and ecological field surveys. Results highlight that channel adjustments occurred through two distinct phases. Most of the channel changes occurred from the 1950s until the end of the 1990s (phase 1) and led to an overall channel narrowing (from 81 to 96%) and channel bed lowering (1-4 m). These changes were accompanied by pattern shifts from multithread to single-thread configurations. The reaches located downstream of the Occhito dam were affected by more intense modifications, especially channel narrowing, with respect to upstream reaches. From 2000 to 2016 (phase 2), a trend inversion occurred. Downstream reaches remained essentially stable, while upstream reaches were affected even by some channel widening and bed aggradation and slight increase of the extension of floodplain areas giving more space to the potential development of the riparian vegetation. The evolution and the present geomorphological conditions of the river corridor are also reflected by the state of the riparian vegetation. Upstream reaches are characterized by a higher richness in riparian vegetation types and vegetation cover with respect to downstream reaches. Best conditions occur especially in the upper Fortore valley. In the downstream reaches, riparian vegetation only consists of narrow bands of trees squeezed between the river channel and the cultivated areas. Consequently, the ecological functionality of the river corridor is highest in the upper valley and decreases gradually downstream. Anyway, along the Fortore River, several habitats and species of European interest (Habitats Directive 92/43/ECC) have been found, such as EC habitats 92A0, 3260, 3270, 3280 and the European otter. However, the conservation status of these habitats and species is critical particularly in the medium-lower valley where a buffer zone between the river channel and the cultivated land should be restored for enhancing the natural recovery of the channel system and allowing the local retreat of river banks during flood events. On overall, the present-day geomorphic-ecological characteristics of the Fortore River corridor show that the reaches located in the medium-upper valley, upstream of the dam, present a good morphological quality, a high richness in vegetation and elevated recovery potentials. Instead, the reaches located in the lower valley, downstream of the dam, are characterized by overall bad morphological and ecological conditions and scarce to nil recovery potentials.
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Causes and Consequences of Replication Stress
Zeman, Michelle K.; Cimprich, Karlene A.
2015-01-01
Replication stress is a complex phenomenon which has serious implications for genome stability, cell survival, and human disease. Generation of aberrant replication fork structures containing single-stranded DNA activates the replication stress response, primarily mediated by the kinase ATM- and Rad3-related (ATR). ATR and its downstream effectors stabilize and help to restart stalled replication forks, avoiding the generation of DNA damage and genome instability. Understanding these pathways may be key to diagnosis and treatment of human diseases caused by defective responses to replication stress. PMID:24366029
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Transforming the Activation of Clinical Trials.
Watters, Julie T; Pitzen, Jason H; Sanders, Linda J; Bruce, Virginia Nickie M; Cornell, Alissa R; Cseko, Gary C; Grace, Janice S; Kwon, Pamela S; Kukla, Andrea K; Lee, Michael S; Monosmith, Michelle D; Myren, John D; Kottschade, Rebecca S; Shaft, Marc N; Weis, Jennifer Jenny A; Welter, Jane C; Bharucha, Adil E
2018-01-01
The Institute of Medicine and US Food and Drug Administration (FDA) recognize that activating clinical trials in the United States is lengthy and inefficient. Downstream consequences include increased expense, suboptimal accrual, move of clinical trials overseas, and delayed availability of treatments for patients. An in-tandem processing initiative is here highlighted that transformed the activation of clinical trials (TACT), reduced the activation time by 70%, and offers a paradigm for enhanced translational readiness. © 2017 American Society for Clinical Pharmacology and Therapeutics.
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Hallerman, E M; Nave, A; Kashi, Y; Holzer, Z; Soller, M; Beckmann, J S
1987-01-01
Two bovine populations, a Holstein-Friesian dairy stock and a synthetic (Baladi X Hereford X Simmental X Charolais) beef stock, were screened for restriction fragment length polymorphisms (RFLPs) at the growth hormone and prolactin genes. Most RFLPs at the growth hormone gene are apparently the consequence of an insertion/deletion event which was localized to a region downstream of the structural gene. The restriction map for the genomic region including the growth hormone gene was extended. Two HindIII RFLPs at the growth hormone locus, as well as several RFLPs at the prolactin gene, seemed to be the consequence of a series of point mutations. The results are discussed in terms of the possibility that minor genomic variability underlies quantitative genetic variation.
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Seamone, Evan R.; McGuire, James; Clark, Sean; Smee, Daniel; Dow, Daniel
2014-01-01
The cultural divide between US military and civilian institutions amplifies the consequences of military discharge status on public health and criminal justice systems in a manner that is invisible to a larger society. Prompt removal of problematic wounded warriors through retributive justice is more expedient than lengthy mental health treatment. Administrative and punitive discharges usually preclude Department of Veterans Affairs eligibility, posing a heavy public health burden. Moving upstream—through military rehabilitative justice addressing military offenders’ mental health needs before discharge—will reduce the downstream consequences of civilian maladjustment and intergenerational transmission of mental illness. The public health community can play an illuminating role by gathering data about community effect and by advocating for policy change at Department of Veterans Affairs and community levels. PMID:25122020
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The Water-Use Implications of a Changing Power Sector
NASA Astrophysics Data System (ADS)
Peer, R.; Sanders, K.
2016-12-01
Changing policies, declining natural gas prices due to shale production and, growing pressure for cleaner energy sources are causing significant shifts in the fuels and technologies utilized for US electricity generation. These shifts have already impacted the volumes of water required for cooling thermal power plants, imposing consequences for watersheds that have yet to be quantified. This research investigates how these regulatory, economic, and socially-driven changes in the power sector have impacted cooling water usage across the US, which currently represents nearly half of US water withdrawals. This study uses plant-specific fuel consumption, generation, and cooling water data to assess water usage trends in the power sector from 2008 to 2014 across HUC-8 hydrologic units. Over this period, transitions from steam-cycle coal and nuclear units towards combined-cycle natural gas units and renewables, as well as transitions from once-through cooling towards wet recirculating tower and dry cooling systems resulted in large shifts in water usage. Trends towards non-traditional cooling water sources such as recycled water reduced freshwater consumption in some watersheds. Although US cooling water withdrawals and consumption increased from 2008 to 2014 largely due to electricity demand growth, the average water withdrawn and consumed per unit of electricity generated decreased and remained similar in magnitude, respectively. Changes at the watershed scale were not uniform, with some experiencing significant water use reductions and environmental benefits, especially due to coal-fired power plant retirements. Results highlight the importance of evaluating both water withdrawals and consumption at local spatial scales, as these shifts have varying consequences on water availability and quality for downstream users and ecosystems. This analysis underscores the importance of prioritizing local water security in global climate change adaptation and mitigation efforts.
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Entropy and information in flagellar axoneme cybernetics: a radial spokes integrative function.
Cibert, Christian
2003-04-01
Radial spokes and the consequences of their relationships with the central apparatus seem to play a very important role in the regulation of axonemal activity. We modeled their behavior and observed that it appears to differ in the cilium and the flagellum with respect to the development of bending as a function of time. Specifically, our calculation raises the question of the real function of the radial spokes in the regulation of the axoneme, because a given curvature of the flagellar axoneme may correspond to two opposite of their tilts. The stable nil/low amplitude shear points that we had characterized along the flagellum allowed us to describe their axoneme as a series of modules [Cibert, 2002: Cell Motil. Cytoskeleton 51:89-111]. We observed that a nil/low shearing point moves along each module during beating when a new bend is created at the base of the flagellum [Cibert, 2001: Cell Motil. Cytoskeleton 49:161-175]. We propose that the structural gradients of isoforms of tubulin could be basic verniers that act as structural references for the axonemal machinery during the beating. This allowed us to interpret the axonemal organization as a segmented structure, that could be analyzed according to the complexion(1) theory and Shannon's information theory, which associate entropy and probability in the creation of information. The important consequence of this interpretation is that regulation of the axonemal machinery appears to be due to the upstream and downstream cross-talk between the axonemal segments that do not involve any dedicated integrative structure but depend on the energy level of the entire length of each module. Copyright 2003 Wiley-Liss, Inc.(1)Complexion was defined by Boltzman in 1877 and used by Planck in 1900 to calculate the energy distribution of a normal spectrum [Morowitz, 1970].
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Inequality and visibility of wealth in experimental social networks.
Nishi, Akihiro; Shirado, Hirokazu; Rand, David G; Christakis, Nicholas A
2015-10-15
Humans prefer relatively equal distributions of resources, yet societies have varying degrees of economic inequality. To investigate some of the possible determinants and consequences of inequality, here we perform experiments involving a networked public goods game in which subjects interact and gain or lose wealth. Subjects (n = 1,462) were randomly assigned to have higher or lower initial endowments, and were embedded within social networks with three levels of economic inequality (Gini coefficient = 0.0, 0.2, and 0.4). In addition, we manipulated the visibility of the wealth of network neighbours. We show that wealth visibility facilitates the downstream consequences of initial inequality-in initially more unequal situations, wealth visibility leads to greater inequality than when wealth is invisible. This result reflects a heterogeneous response to visibility in richer versus poorer subjects. We also find that making wealth visible has adverse welfare consequences, yielding lower levels of overall cooperation, inter-connectedness, and wealth. High initial levels of economic inequality alone, however, have relatively few deleterious welfare effects.
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NASA Astrophysics Data System (ADS)
Moita, Rodrigo Menon Simoes
This dissertation is about the electricity industry and the problems that arise with the liberalization and de-regulation of the industry. Characteristics intrinsic to the electricity market create problems that can compromise an efficient functioning of this market. Each of the two chapters of this dissertation focus on a specific aspect of this industry. The first chapter analyzes entry in the hydroelectric generation industry. The operation of a generator upstream regularizes the river flow for generators located downstream on the same river, increasing the production capacity of the latter. This positive externality increases the attractiveness of the locations downstream whenever a generator decides to enter upstream. Therefore, the entry decision of a generator in a given location may affect all entry decisions in potential locations for plants located downstream. I first model the problem of generators located in cascade on the same river and show the positive effect of the externality. Second, I use a panel of data on investment decisions of hydro-generation firms to estimate an entry model that takes into account the effect of the externality generated by entry upriver. The results show a positive incentive to locate downstream from existing plants and from locations where entry is likely to occur. Location characteristics also play an important role on the entrants' decisions. The model provides estimates of the average expected market price across the different years covered by the sample and shows that it rose one year before the energy crisis of 2001, evidencing that the market anticipated the crisis. This result has important implications on the evaluation of the Brazilian market design. It shows that entry responded to a rise in expectations about excess demand in the future, contradicting the argument that the crisis was a consequence of mis-designed market institutions. The second chapter deals with the problem of the political cycle in regulated industries. It follows Paiva (1995) in combining elements of both the political cycle approach of Rogoff and Sibert and the political theory of regulation of Peltzman: the idea that policy decisions may change with the proximity of elections is borrowed from the political business cycle theory and added to enhance the traditional, static models of political regulation. More specifically, I combine the main ideas of Peltzman (1976) and Rogoff and Sibert (1988) to model the regulator's problem as a signaling game where politicians set the regulated price trying to maximize electoral support by signaling to voters a pro-consumer behavior. Political incentives and welfare constraints interact in the model yielding an equilibrium in which the real price in a regulated industry falls in periods immediately preceding an election. Besides presenting a new model of political price cycles in regulated industries, this paper empirically test this theory. Using quarterly data from 35 industrial and developing countries over the period 1978-2004, I find a negative but not statistically significant relationship between elections and electricity prices.
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Medical Student Bias and Care Recommendations for an Obese versus Non-Obese Virtual Patient
Persky, Susan; Eccleston, Collette P.
2010-01-01
Objective This study examined the independent effect of a patient's weight on medical students' attitudes, beliefs, and interpersonal behavior toward the patient, in addition to the clinical recommendations they make for her care. Design Seventy-six clinical-level medical students were randomly assigned to interact with a digital, virtual female patient who was visibly either obese or non-obese. Methods Interactions with the patient took place in an immersive virtual clinical environment (i.e., virtual reality) which allowed standardization of all patient behaviors and characteristics except for weight. Visual contact behavior was automatically recorded during the interaction. Afterward, participants filled out a battery of self-report questionnaires. Results Analyses revealed more negative stereotyping, less anticipated patient adherence, worse perceived health, more responsibility attributed for potentially weight-related presenting complaints, and less visual contact directed toward the obese version of a virtual patient than the non-obese version of the patient. In contrast, there was no clear evidence of bias in clinical recommendations made for the patient's care. Conclusion Biases in attitudes, beliefs, and interpersonal behavior have important implications because they can influence the tone of clinical encounters and rapport in the patient-provider relationship, which can have important downstream consequences. Gaining a clear understanding of the nature and source of weight bias in the clinical encounter is an important first step toward development of strategies to address it. PMID:20820169
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Cornick, Steve; Moreau, France; Gaisano, Herbert Y; Chadee, Kris
2017-10-03
Intestinal mucus secretion is critical in maintaining mucosal host defense against a myriad of pathogens by preventing direct association with the epithelium. Entamoeba histolytica specifically binds colonic MUC2 mucin and also induces potent hypersecretion from goblet cells; however, characterization of the nature of the mechanisms controlling mucus release remains elusive. In this report, we identify vesicle SNARE vesicle-associated membrane protein 8 (VAMP8) present on mucin granules as orchestrating regulated exocytosis in human goblet cells in response to the presence of E. histolytica VAMP8 was specifically activated during E. histolytica infection, and ablation of VAMP8 led to impaired mucin secretion. As a consequence, loss of VAMP8 increased E. histolytica adherence to epithelial cells associated with enhanced cell death through apoptosis characterized by caspase 3 and 9 cleavages and DNA fragmentation. With the mucosal barrier compromised in Vamp8 -/- animals, E. histolytica induced an aggressive proinflammatory response with elevated levels of interleukin-1 alpha (IL-1α), IL-1β, and tumor necrosis factor alpha (TNF-α) secretion. This report is the first to characterize regulated mucin exocytosis in intestinal goblet cells in response to a pathogen and the downstream consequences of improper mucin secretion in mucosal barrier defense. IMPORTANCE The intestinal tract is exposed to countless substances and pathogens, and yet homeostasis is maintained, in part by the mucus layer that houses the microbiota and spatially separates potential threats from the underlying single layer of epithelium. Despite the critical role of mucus in innate host defense, characterization of the mechanisms by which mucus is secreted from specialized goblet cells in the gut remains elusive. Here, we describe the machinery that regulates mucus secretion as well as the consequence during infection with the colonic pathogen Entamoeba histolytica Abolishment of the key machinery protein VAMP8 abrogated mucus release in cultured human colonic goblet cells and during E. histolytica infection in Vamp8 -/- mice, which showed enhanced amoeba contact and killing of epithelial cells, triggering a potent proinflammatory response. This report highlights the importance of the VAMP8 secretory machinery in facilitating mucus release from intestinal goblet cells and the dire consequences that occur during disease pathogenesis if these pathways are not functional. Copyright © 2017 Cornick et al.
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Guo, Yun-Yun; Lu, Yi; Zheng, Yuan; Chen, Xiao-Rong; Dong, Jun-Lu; Yuan, Rong-Rong; Huang, Shu-Hong; Yu, Hui; Wang, Yue; Chen, Zhe-Yu; Su, Bo
2017-06-21
Multiple studies have established that brain-derived neurotrophic factor (BDNF) plays a critical role in the regulation of synaptic plasticity via its receptor, TrkB. In addition to being phosphorylated, TrkB has also been demonstrated to be ubiquitinated. However, the mechanisms of TrkB ubiquitination and its biological functions remain poorly understood. In this study, we demonstrate that ubiquitin C-terminal hydrolase L1 (UCH-L1) promotes contextual fear conditioning learning and memory via the regulation of ubiquitination of TrkB. We provide evidence that UCH-L1 can deubiquitinate TrkB directly. K460 in the juxtamembane domain of TrkB is the primary ubiquitination site and is regulated by UCH-L1. By using a peptide that competitively inhibits the association between UCH-L1 and TrkB, we show that the blockade of UCH-L1-regulated TrkB deubiquitination leads to increased BDNF-induced TrkB internalization and consequently directs the internalized TrkB to the degradation pathway, resulting in increased degradation of surface TrkB and attenuation of TrkB activation and its downstream signaling pathways. Moreover, injection of the peptide into the DG region of mice impairs hippocampus-dependent memory. Together, our results suggest that the ubiquitination of TrkB is a mechanism that controls its downstream signaling pathways via the regulation of its endocytosis and postendocytic trafficking and that UCH-L1 mediates the deubiquitination of TrkB and could be a potential target for the modulation of hippocampus-dependent memory. SIGNIFICANCE STATEMENT Ubiquitin C-terminal hydrolase L1 (UCH-L1) has been demonstrated to play important roles in the regulation of synaptic plasticity and learning and memory. TrkB, the receptor for brain-derived neurotrophic factor, has also been shown to be a potent regulator of synaptic plasticity. In this study, we demonstrate that UCH-L1 functions as a deubiquitinase for TrkB. The blockage of UCH-L1-regulated deubiquitination of TrkB eventually results in the increased degradation of surface TrkB and decreased activation of TrkB and its downstream signaling pathways. In vivo , UCH-L1-regulated TrkB deubiquitination is necessary for hippocampus-dependent memory. Overall, our study provides novel insights into the mechanisms of UCH-L1-mediated neurobiological functions and suggests that ubiquitination is an important regulatory signal for TrkB functions. Copyright © 2017 the authors 0270-6474/17/375978-18$15.00/0.
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NASA Astrophysics Data System (ADS)
Arp, Hans Peter H.; Goss, Kai-Uwe
Due to the apparent environmental omnipresence of perfluorocarboxylic acids (PFAs), an increasing number of researchers are investigating their ambient particle- and gas-phase concentrations. Typically this is done using a high-volume air sampler equipped with Quartz Fiber Filters (QFFs) or Glass Fiber Filters (GFFs) to sample the particle-bound PFAs and downstream sorbents to sample the gas-phase PFAs. This study reports that at trace, ambient concentrations gas-phase PFAs sorb to QFFs and GFFs irreversibly and hardly pass through these filters to the downstream sorbents. As a consequence, it is not possible to distinguish between particle- and gas-phase concentrations, or to distinguish concentrations on different particle size fractions, unless precautions are taken. Failure to take such precautions could have already caused reported data to be misinterpreted. Here it is also reported that deactivating QFFs and GFFs with a silylating agent renders them suitable for sampling PFAs. Based on the presented study, a series of recommendations for air-sampling PFAs are provided.
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Modeling marine boundary-layer clouds with a two-layer model: A one-dimensional simulation
NASA Technical Reports Server (NTRS)
Wang, Shouping
1993-01-01
A two-layer model of the marine boundary layer is described. The model is used to simulate both stratocumulus and shallow cumulus clouds in downstream simulations. Over cold sea surfaces, the model predicts a relatively uniform structure in the boundary layer with 90%-100% cloud fraction. Over warm sea surfaces, the model predicts a relatively strong decoupled and conditionally unstable structure with a cloud fraction between 30% and 60%. A strong large-scale divergence considerably limits the height of the boundary layer and decreases relative humidity in the upper part of the cloud layer; thus, a low cloud fraction results. The efffects of drizzle on the boundary-layer structure and cloud fraction are also studied with downstream simulations. It is found that drizzle dries and stabilizes the cloud layer and tends to decouple the cloud from the subcloud layer. Consequently, solid stratocumulus clouds may break up and the cloud fraction may decrease because of drizzle.
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Molecular turnover, the H3.3 dilemma and organismal aging (hypothesis)
Saade, Evelyne; Pirozhkova, Iryna; Aimbetov, Rakhan; Lipinski, Marc; Ogryzko, Vasily
2015-01-01
The H3.3 histone variant has been a subject of increasing interest in the field of chromatin studies due to its two distinguishing features. First, its incorporation into chromatin is replication independent unlike the replication-coupled deposition of its canonical counterparts H3.1/2. Second, H3.3 has been consistently associated with an active state of chromatin. In accordance, this histone variant should be expected to be causally involved in the regulation of gene expression, or more generally, its incorporation should have downstream consequences for the structure and function of chromatin. This, however, leads to an apparent paradox: In cells that slowly replicate in the organism, H3.3 will accumulate with time, opening the way to aberrant effects on heterochromatin. Here, we review the indications that H3.3 is expected both to be incorporated in the heterochromatin of slowly replicating cells and to retain its functional downstream effects. Implications for organismal aging are discussed. PMID:25720734
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Conveying endogenous and exogenous signals: MAPK cascades in plant growth and defense.
Zhang, Mengmeng; Su, Jianbin; Zhang, Yan; Xu, Juan; Zhang, Shuqun
2018-05-09
Mitogen-activated protein kinase (MAPK) cascades are key signaling modules downstream of receptors/sensors that perceive endogenous and exogenous stimuli such as hormones, peptide ligands, and pathogen-derived patterns/effectors. In this review, we summarize recent advances in the establishment of MAPK cascades as unified signaling modules downstream of receptor-like kinases (RLKs) and receptor-like proteins (RLPs) in plant growth and defense, the identification of components connecting the RLK/RLP receptor complexes to the MAPK cascades, and the interactions between MAPK and hormone signaling pathways. We also propose a set of criteria for defining the physiological substrates of plant MAPKs. With only a limited number of MAPK components, multiple functional pathways often share the same MAPK cascade. As a result, understanding the signaling specificity, which requires detailed information about the spatiotemporal expression of the components involved, their complex formation, and the consequence of substrate phosphorylation, is central to our study of MAPK functions. Copyright © 2018 Elsevier Ltd. All rights reserved.
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Hydrogeomorphic effects of explosive volcanic eruptions on drainage basins
Pierson, Thomas C.; Major, Jon J.
2014-01-01
Explosive eruptions can severely disturb landscapes downwind or downstream of volcanoes by damaging vegetation and depositing large volumes of erodible fragmental material. As a result, fluxes of water and sediment in affected drainage basins can increase dramatically. System-disturbing processes associated with explosive eruptions include tephra fall, pyroclastic density currents, debris avalanches, and lahars—processes that have greater impacts on water and sediment discharges than lava-flow emplacement. Geo-morphic responses to such disturbances can extend far downstream, persist for decades, and be hazardous. The severity of disturbances to a drainage basin is a function of the specific volcanic process acting, as well as distance from the volcano and magnitude of the eruption. Postdisturbance unit-area sediment yields are among the world's highest; such yields commonly result in abundant redeposition of sand and gravel in distal river reaches, which causes severe channel aggradation and instability. Response to volcanic disturbance can result in socioeconomic consequences more damaging than the direct impacts of the eruption itself.
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Ge, Xuecai; Milenkovic, Ljiljana; Suyama, Kaye; Hartl, Tom; Purzner, Teresa; Winans, Amy; Meyer, Tobias; Scott, Matthew P
2015-09-15
Alterations in Hedgehog (Hh) signaling lead to birth defects and cancers including medulloblastoma, the most common pediatric brain tumor. Although inhibitors targeting the membrane protein Smoothened suppress Hh signaling, acquired drug resistance and tumor relapse call for additional therapeutic targets. Here we show that phosphodiesterase 4D (PDE4D) acts downstream of Neuropilins to control Hh transduction and medulloblastoma growth. PDE4D interacts directly with Neuropilins, positive regulators of Hh pathway. The Neuropilin ligand Semaphorin3 enhances this interaction, promoting PDE4D translocation to the plasma membrane and cAMP degradation. The consequent inhibition of protein kinase A (PKA) enhances Hh transduction. In the developing cerebellum, genetic removal of Neuropilins reduces Hh signaling activity and suppresses proliferation of granule neuron precursors. In mouse medulloblastoma allografts, PDE4D inhibitors suppress Hh transduction and inhibit tumor growth. Our findings reveal a new regulatory mechanism of Hh transduction, and highlight PDE4D as a promising target to treat Hh-related tumors.
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Bourseguin, Julie; Bonet, Caroline; Renaud, Emilie; Pandiani, Charlotte; Boncompagni, Marina; Giuliano, Sandy; Pawlikowska, Patrycja; Karmous-Benailly, Houda; Ballotti, Robert; Rosselli, Filippo; Bertolotto, Corine
2016-11-09
Proteins involved in genetic stability maintenance and safeguarding DNA replication act not only against cancer initiation but could also play a major role in sustaining cancer progression. Here, we report that the FANC pathway is highly expressed in metastatic melanoma harboring the oncogenic microphthalmia-associated transcription factor (MiTF). We show that MiTF downregulation in melanoma cells lowers the expression of several FANC genes and proteins. Moreover, we observe that, similarly to the consequence of MiTF downregulation, FANC pathway silencing alters proliferation, migration and senescence of human melanoma cells. We demonstrate that the FANC pathway acts downstream MiTF and establish the existence of an epistatic relationship between MiTF and the FANC pathway. Our findings point to a central role of the FANC pathway in cellular and chromosomal resistance to both DNA damage and targeted therapies in melanoma cells. Thus, the FANC pathway is a promising new therapeutic target in melanoma treatment.
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Bourseguin, Julie; Bonet, Caroline; Renaud, Emilie; Pandiani, Charlotte; Boncompagni, Marina; Giuliano, Sandy; Pawlikowska, Patrycja; Karmous-Benailly, Houda; Ballotti, Robert; Rosselli, Filippo; Bertolotto, Corine
2016-01-01
Proteins involved in genetic stability maintenance and safeguarding DNA replication act not only against cancer initiation but could also play a major role in sustaining cancer progression. Here, we report that the FANC pathway is highly expressed in metastatic melanoma harboring the oncogenic microphthalmia-associated transcription factor (MiTF). We show that MiTF downregulation in melanoma cells lowers the expression of several FANC genes and proteins. Moreover, we observe that, similarly to the consequence of MiTF downregulation, FANC pathway silencing alters proliferation, migration and senescence of human melanoma cells. We demonstrate that the FANC pathway acts downstream MiTF and establish the existence of an epistatic relationship between MiTF and the FANC pathway. Our findings point to a central role of the FANC pathway in cellular and chromosomal resistance to both DNA damage and targeted therapies in melanoma cells. Thus, the FANC pathway is a promising new therapeutic target in melanoma treatment. PMID:27827420
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Blattmann, Peter; Heusel, Moritz; Aebersold, Ruedi
2016-01-01
SWATH-MS is an acquisition and analysis technique of targeted proteomics that enables measuring several thousand proteins with high reproducibility and accuracy across many samples. OpenSWATH is popular open-source software for peptide identification and quantification from SWATH-MS data. For downstream statistical and quantitative analysis there exist different tools such as MSstats, mapDIA and aLFQ. However, the transfer of data from OpenSWATH to the downstream statistical tools is currently technically challenging. Here we introduce the R/Bioconductor package SWATH2stats, which allows convenient processing of the data into a format directly readable by the downstream analysis tools. In addition, SWATH2stats allows annotation, analyzing the variation and the reproducibility of the measurements, FDR estimation, and advanced filtering before submitting the processed data to downstream tools. These functionalities are important to quickly analyze the quality of the SWATH-MS data. Hence, SWATH2stats is a new open-source tool that summarizes several practical functionalities for analyzing, processing, and converting SWATH-MS data and thus facilitates the efficient analysis of large-scale SWATH/DIA datasets.
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Kinetic features and non-stationary electron trapping in paraxial magnetic nozzles
NASA Astrophysics Data System (ADS)
Sánchez-Arriaga, G.; Zhou, J.; Ahedo, E.; Martínez-Sánchez, M.; Ramos, J. J.
2018-03-01
The paraxial expansion of a collisionless plasma jet into vacuum, guided by a magnetic nozzle, is studied with an Eulerian and non-stationary Vlasov-Poisson solver. Parametric analyzes varying the magnetic field expansion rate, the size of the simulation box, and the electrostatic potential fall are presented. After choosing the potential fall leading to a zero net current beam, the steady states of the simulations exhibit a quasi-neutral region followed by a downstream sheath. The latter, an unavoidable consequence of the finite size of the computational domain, does not affect the quasi-neutral region if the box size is chosen appropriately. The steady state presents a strong decay of the perpendicular temperature of the electrons, whose profile versus the inverse of the magnetic field does not depend on the expansion rate within the quasi-neutral region. As a consequence, the electron distribution function is highly anisotropic downstream. The simulations revealed that the ions reach a higher velocity during the transient than in the steady state and their distribution functions are not far from mono-energetic. The density percentage of the population of electrons trapped during the transient, which is computed self-consistently by the code, is up to 25% of the total electron density in the quasi-neutral region. It is demonstrated that the exact amount depends on the history of the system and the steady state is not unique. Nevertheless, the amount of trapped electrons is smaller than the one assumed heuristically by kinetic stationary theories.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Du Yuzhe; Nomura, Yoshiko; Luo Ningguang
2009-01-15
Pyrethroid insecticides are classified as type I or type II based on their distinct symptomology and effects on sodium channel gating. Structurally, type II pyrethroids possess an {alpha}-cyano group at the phenylbenzyl alcohol position, which is lacking in type I pyrethroids. Both type I and type II pyrethroids inhibit deactivation consequently prolonging the opening of sodium channels. However, type II pyrethroids inhibit the deactivation of sodium channels to a greater extent than type I pyrethroids inducing much slower decaying of tail currents upon repolarization. The molecular basis of a type II-specific action, however, is not known. Here we report themore » identification of a residue G{sup 1111} and two positively charged lysines immediately downstream of G{sup 1111} in the intracellular linker connecting domains II and III of the cockroach sodium channel that are specifically involved in the action of type II pyrethroids, but not in the action of type I pyrethroids. Deletion of G{sup 1111}, a consequence of alternative splicing, reduced the sodium channel sensitivity to type II pyrethroids, but had no effect on channel sensitivity to type I pyrethroids. Interestingly, charge neutralization or charge reversal of two positively charged lysines (Ks) downstream of G{sup 1111} had a similar effect. These results provide the molecular insight into the type II-specific interaction of pyrethroids with the sodium channel at the molecular level.« less
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The Predictability of Extratropical Transition and of its Impact on the Downstream Flow
2008-03-28
is predicted to reach a continent as an extratropical storm . Arguably the larger impact on predictability, however, occurs due to the above mentioned...Office of Naval Research Project The Predictability of Extratropical Transition and of its Impact on the Downstream Flow Award Number: N00014-06-1...12 0 76128 Karlsruhe 0 March 28, 2008 1 * 4 -d 60-( CONTENTS 3 Contents 1 Objectives 5 2 Scientific Importance 6 3 Extratropical Transition in
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Lu, Ding; McDowell, Julia Z.; Davis, George M.; Spear, Robert C.; Remais, Justin V.
2012-01-01
Environmental models, often applied to questions on the fate and transport of chemical hazards, have recently become important in tracing certain environmental pathogens to their upstream sources of contamination. These tools, such as first order decay models applied to contaminants in surface waters, offer promise for quantifying the fate and transport of pathogens with multiple environmental stages and/or multiple hosts, in addition to those pathogens whose environmental stages are entirely waterborne. Here we consider the fate and transport capabilities of the human schistosome Schistosoma japonicum, which exhibits two waterborne stages and is carried by an amphibious intermediate snail host. We present experimentally-derived dispersal estimates for the intermediate snail host and fate and transport estimates for the passive downstream diffusion of cercariae, the waterborne, human-infective parasite stage. Using a one dimensional advective transport model exhibiting first-order decay, we simulate the added spatial reach and relative increase in cercarial concentrations that dispersing snail hosts contribute to downstream sites. Simulation results suggest that snail dispersal can substantially increase the concentrations of cercariae reaching downstream locations, relative to no snail dispersal, effectively putting otherwise isolated downstream sites at increased risk of exposure to cercariae from upstream sources. The models developed here can be applied to other infectious diseases with multiple life-stages and hosts, and have important implications for targeted ecological control of disease spread. PMID:23162675
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Conzelmann, L O; Doemland, M; Weigang, E; Frieß, T; Schotten, S; Düber, C; Vahl, C F
2013-04-01
The aim of the present study was to evaluate the outcome of endovascular treatment of true-lumen collapse (TLC) of the downstream aorta after open surgery for acute aortic dissection type A (AADA). Retrospective, observational study with follow-up of 16 ± 7.6 months. From April 2010 to January 2012, 89 AADA-patients underwent aortic surgery. Out of these, computed tomography revealed a TLC of the downstream aorta in 13 patients (14.6%). They all received additional thoracic endovascular aortic repair (TEVAR) in consequence of malperfusion syndromes. In all 13 TLC-patients, dissection after AADA-surgery extended from the aortic arch to the abdominal aorta and malperfusion syndromes occurred. Remodeling of the true-lumen was achieved by TEVAR with complemental stent disposal in abdominal and iliac arteries in all cases. One patient died on the third postoperative day due to intracerebral hemorrhage. Another patient, who presented under severe cardiogenic shock died despite AADA-surgery and TEVAR-treatment. Thirty-day mortality was 15.4% in TLC-patients (N = 2/13). In the follow-up period, 3 patients required additional aortic stents after the emergency TEVAR procedures. After 20 weeks, a third patient died secondary to malperfusion due to false-lumen recanalization. Therefore, late mortality was 23.1%. After proximal aortic repair for AADA, early postoperative computed tomography should be demanded in all patients to exclude a TLC of the descending aorta. Mortality is still substantial in these patients despite instant TEVAR application. Thus, in case of TLC and malperfusion syndrome of the downstream aorta, TEVAR should be performed early to alleviate or even prevent ischemic injury.
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NASA Astrophysics Data System (ADS)
Haritashya, U. K.; Strattman, K.; Kargel, J. S.
2017-12-01
A high altitude glacierized region in the central Himalaya hosts thousands of glaciers and originates major rivers like the Ganges and Yamuna. This region has seen significant changes in last few decades due to climate system coupling involving the westerlies and the monsoon, high seismic activities, complex topography, extensive glacier debris cover, and widespread mass movement. Consequently, we analyzed regional variability in hundreds of glacier surface processes and downstream river basins of varying geomorphology using a variety of satellite imagery from the early 1990s to 2017. Our results indicate a massive increase in supraglacial ponds in south facing glaciers. Several of these ponds are either seasonal and forms exactly at the same location every year or forms at the beginning of the melt season and drains out as the season progresses from April to July/August. We also observed evolution in size of these ponds in the last two decades to the point where some of them now seem to be stationary and might increase in size and develop large lake in the future. To understand our result and melting pattern in the region, we also analyzed ice velocity and surface temperature; both of which reveals a temporal shift in the pattern. Glacier surface temperatures, especially show a warming pattern in recent years and strong correlation with debris cover. Additionally, we also observed changes in the downstream region both around the river bed and steep slopes where massive erosion of Himalayan glaciers are depositing and transporting excessive amount of sediments. Overall, our results are discussed in the context of better landscape evolution modeling from the top of the glacier to the several km downstream from the glacier terminus.
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Anderson, Elizabeth P.; Freeman, Mary C.; Pringle, C.M.
2006-01-01
Small dams for hydropower have caused widespread alteration of Central American rivers, yet much of recent development has gone undocumented by scientists and conservationists. We examined the ecological effects of a small hydropower plant (Dona Julia Hydroelectric Center) on two low-order streams (the Puerto Viejo River and Quebradon stream) draining a mountainous area of Costa Rica. Operation of the Dona Julia plant has dewatered these streams, reducing discharge to ~ 10% of average annual flow. This study compared fish assemblage composition and aquatic habitat upstream and downstream of diversion dams on two streams and along a ~ 4 km dewatered reach of the Puerto Viejo River in an attempt to evaluate current instream flow recommendations for regulated Costa Rican streams. Our results indicated that fish assemblages directly upstream and downstream of the dam on the third order Puerto Viejo River were dissimilar, suggesting that the small dam (< 15 in high) hindered movement of fishes. Along the ~ 4 km dewatered reach of the Puerto Viejo River, species count increased with downstream distance from the dam. However, estimated species richness and overall fish abundance were not significantly correlated with downstream distance from the dam. Our results suggested that effects of stream dewatering may be most pronounced for a subset of species with more complex reproductive requirements, classified as equilibrium-type species based on their life-history. In the absence of changes to current operations, we expect that fish assemblages in the Puerto Viejo River will be increasingly dominated by opportunistic-type, colonizing fish species. Operations of many other small hydropower plants in Costa Rica and other parts of Central America mirror those of Doha Julia; the methods and results of this study may be applicable to some of those projects.
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NASA Astrophysics Data System (ADS)
Keith, M. K.; Wallick, R.; Taylor, G.; Mangano, J.; White, J.; Schenk, L.
2016-12-01
Drawdowns at Fall Creek Lake, Oregon—one of 13 U.S. Army Corp of Engineers reservoirs in the Willamette Valley Project—lower lake levels to facilitate downstream passage of juvenile spring Chinook salmon through the 55-m high dam. The annual (since 2011) winter drawdowns have improved fish passage, but temporarily lowering Fall Creek Lake nearly to streambed levels has increased downstream transport of predominantly fine (<2 mm) sediment to the lower gravel bed reaches of Fall Creek and the Middle Fork Willamette River. The annual release of reservoir sediments into these historically dynamic reaches has uncertain consequences for aquatic and riparian habitats. In this study, we 1) document reach-scale geomorphic responses to sediment released from Fall Creek Lake over 2011-15 and 2) evaluate linkages between reservoir operations, sediment releases, and resulting downstream responses. Results so far show aggradation of off-channel features such as side-channels, although deposition patterns have changed over 2011-15. Sites along Fall Creek that filled with sand during earlier drawdowns accumulated silt and clay during the 2015 drawdown. Further downstream on the Middle Fork Willamette River, some sites have aggraded almost 2 m with sand through 2015, although most off-channel aggradation has been less than 0.6 meters. During winter of 2015-16, we measured deposition at nine sites; most high bar and low floodplain deposition occurred during 2 weeks after the drawdown when flows were about 35-75% higher than those during the drawdown, suggesting post-drawdown dam operations potentially could be used to minimize associated sediment impacts.
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The dark side of light at night: physiological, epidemiological, and ecological consequences.
Navara, Kristen J; Nelson, Randy J
2007-10-01
Organisms must adapt to the temporal characteristics of their surroundings to successfully survive and reproduce. Variation in the daily light cycle, for example, acts through endocrine and neurobiological mechanisms to control several downstream physiological and behavioral processes. Interruptions in normal circadian light cycles and the resulting disruption of normal melatonin rhythms cause widespread disruptive effects involving multiple body systems, the results of which can have serious medical consequences for individuals, as well as large-scale ecological implications for populations. With the invention of electrical lights about a century ago, the temporal organization of the environment has been drastically altered for many species, including humans. In addition to the incidental exposure to light at night through light pollution, humans also engage in increasing amounts of shift-work, resulting in repeated and often long-term circadian disruption. The increasing prevalence of exposure to light at night has significant social, ecological, behavioral, and health consequences that are only now becoming apparent. This review addresses the complicated web of potential behavioral and physiological consequences resulting from exposure to light at night, as well as the large-scale medical and ecological implications that may result.
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NASA Astrophysics Data System (ADS)
Wang, Y.; Fang, D., VI; Xu, J.; Dong, Q.
2017-12-01
The Lancang-Mekong River is an important international river, cascaded hydropower stations development in which attracts the attention of downstream countries. In this paper, we proposed a coordination framework for water resources utilization on the interests of mutual compensation to relieve the conflict of upstream and downstream countries. Firstly, analyze the benefits and risks caused by the cascaded hydropower stations development and the evolution process of water resources use conflict between upstream and downstream countries. Secondly, evaluate the benefits and risks of flood control, water supply, navigation and power generation based on the energy theory of cascaded hydropower stations development in Lancang-Mekong River. Thirdly, multi-agent cooperation motivation and cooperation conditions between upstream and downstream countries in Lancang-Mekong River is given. Finally, the coordination framework for water resources utilization on the interests of mutual compensation in Lancang-Mekong River is presented. This coordination framework for water resources utilization can increase comprehensive benefits in Lancang-Mekong River.
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Scallan, Joshua P; Wolpers, John H; Davis, Michael J
2013-01-01
Collecting lymphatic vessels generate pressure to transport lymph downstream to the subclavian vein against a significant pressure head. To investigate their response to elevated downstream pressure, collecting lymphatic vessels containing one valve (incomplete lymphangion) or two valves (complete lymphangion) were isolated from the rat mesentery and tied to glass cannulae capable of independent pressure control. Downstream pressure was selectively raised to various levels, either stepwise or ramp-wise, while keeping upstream pressure constant. Diameter and valve positions were tracked under video microscopy, while intralymphangion pressure was measured concurrently with a servo-null micropipette. Surprisingly, a potent lymphatic constriction occurred in response to the downstream pressure gradient due to (1) a pressure-dependent myogenic constriction and (2) a frequency-dependent decrease in diastolic diameter. The myogenic index of the lymphatic constriction (−3.3 ± 0.6, in mmHg) was greater than that of arterioles or collecting lymphatic vessels exposed to uniform increases in pressure (i.e. upstream and downstream pressures raised together). Additionally, the constriction was transmitted to the upstream lymphatic vessel segment even though it was protected from changes in pressure by a closed intraluminal valve; the conducted constriction was blocked by loading only the pressurized half of the vessel with either ML-7 (0.5 mm) to block contraction, or cromakalim (3 μm) to hyperpolarize the downstream muscle layer. Finally, we provide evidence that the lymphatic constriction is important to maintain normal intraluminal valve closure during each contraction cycle in the face of an adverse pressure gradient, which probably protects the lymphatic capillaries from lymph backflow. PMID:23045335
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NASA Astrophysics Data System (ADS)
Nanson, G. C.; Young, R. W.
1981-07-01
Although most streams show a downstream increase in channel size corresponding to a downstream increase in flood discharges, those flowing off the Illawarra escarpment of New South Wales show a marked reduction of channel size, accompanied by a down-stream increase in flood frequency in their lower reaches. Within the confined and steeply sloping valleys of the escarpment foothills, bed and bank sediments are relatively coarse and uncohesive, and channels increase in size, corresponding to increasing discharge downstream. However, once these streams emerge into more open rural valleys at lower slopes and are accompanied by extensive floodplains formed of fine cohesive sediment, there is a dramatic reduction in channel size. This decrease in channel size apparently results from a sudden decline in channel slope and associated stream power, the cohesive nature of downstream alluvium, its retention on the channel banks by a dense cover of pasture grasses, and the availability of an extensive floodplain to carry displaced floodwater. Under these conditions floodwaters very frequently spill out over the floodplain and the downstream channel-flow becomes a relatively unimportant component of the total peak discharge. This emphasizes the importance of these floodplains as a part of the total channel system. In situations where urban development has increased peak runoff and reduced the available area of effective floodplain, stream channels formed in this fine alluvium rapidly entrench and increase in cross-sectional area by 2-3 times. Minor man-induced channel alteration and maintenance appears to trigger this enlargement.
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NASA Astrophysics Data System (ADS)
Pietroń, Jan; Jarsjö, Jerker
2013-04-01
The concentration of heavy metals in rivers is often greater in the sediment load than in the water solution. Overall, heavy metal conveyance with sediment transport is a significant contributor to the global transport of heavy metals. Heavy metals once released to a river system may remain in the deposits of the river from short to very long times, for instance depending on to which extent erosion and deposition can influence the sediment mass stored in the river bed. In general, the mobility of contaminated sediments to downstream water recipients may to large extent be governed by natural sediment transport dynamics during hydrological events, such as flow peaks following heavy rainfalls. The Tuul River (Northern Mongolia) belongs to a Tuul River-Orkhon River-Selenga River- transboundary river system that discharges into Lake Baikal. The river system is largely characterized by its natural hydrological regime with numerous rapid peak flow events of the spring-summer periods. However, recent studies indicate contamination of fine sediment with heavy metals coming from placer gold mining area (Zaamar Goldfield) located along the downstream Tuul River. In this work, the general idea is to create a one-dimensional sediment transport model of the downstream Tuul River, and use field-data supported modeling to investigate natural erosion-deposition rates and the role of peak flows in natural sediment transport at 14 km reach just downstream the gold mining area. The model results show that the sediment load of the finest investigated grain size has a great potential to be eroded from the bed of the studied reach, especially during the main peak flow events. However, the same events are associated with a significant deposition of the finest material. The model results also show different hysteresis behavior of the sediment load rating curves (clockwise and counter-clockwise) during the main peak flow events. These are interpreted as effects of changing in-channel sediment supplies due to sorting method applied in the model. More generally, the modelling may increase our knowledge about the sediment transport patterns of the reach downstream the mining area. This part of the river may be considered as a temporal sink of heavy metals which may accumulate and store sediments. The deposition in such sinks can considerably support attenuation of contaminated sediment loads. On the other hand, sediments that are accumulated in sinks can increase the concentration of contaminated sediment loads during peak flow events. Information about the rates of eroded and accumulated contaminated material in such sinks is important for future water protection planning, especially under changing climate conditions. This work may also provide scientific input to discussions on both adverse environmental consequences of placer mining, and suitable designs of sediment control measures in the Zaamar Goldfield and other continental river systems.
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Arkas: Rapid reproducible RNAseq analysis
Colombo, Anthony R.; J. Triche Jr, Timothy; Ramsingh, Giridharan
2017-01-01
The recently introduced Kallisto pseudoaligner has radically simplified the quantification of transcripts in RNA-sequencing experiments. We offer cloud-scale RNAseq pipelines Arkas-Quantification, and Arkas-Analysis available within Illumina’s BaseSpace cloud application platform which expedites Kallisto preparatory routines, reliably calculates differential expression, and performs gene-set enrichment of REACTOME pathways . Due to inherit inefficiencies of scale, Illumina's BaseSpace computing platform offers a massively parallel distributive environment improving data management services and data importing. Arkas-Quantification deploys Kallisto for parallel cloud computations and is conveniently integrated downstream from the BaseSpace Sequence Read Archive (SRA) import/conversion application titled SRA Import. Arkas-Analysis annotates the Kallisto results by extracting structured information directly from source FASTA files with per-contig metadata, calculates the differential expression and gene-set enrichment analysis on both coding genes and transcripts. The Arkas cloud pipeline supports ENSEMBL transcriptomes and can be used downstream from the SRA Import facilitating raw sequencing importing, SRA FASTQ conversion, RNA quantification and analysis steps. PMID:28868134
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Jautzy, Josué J; Ahad, Jason M E; Hall, Roland I; Wiklund, Johan A; Wolfe, Brent B; Gobeil, Charles; Savard, Martine M
2015-08-04
The downstream accumulation of polycyclic aromatic hydrocarbons (PAHs) in the Peace-Athabasca Delta (PAD), an ecologically important landscape, is a key issue of concern given the rapid development of the oil sands industry in Northern Alberta, Canada. In addition to PAHs derived from industrial activity (i.e., oil sands mining) within the Athabasca watershed, however, forest fires and erosion of fossil fuel deposits within both the Athabasca and Peace watersheds are two potentially important natural sources of PAHs delivered to the PAD. Consequently, evaluating the environmental impact of mining activities requires a quantitative understanding of natural, background PAHs. Here, we utilize molecular-level natural-abundance radiocarbon measurements on an amalgamated sediment record from a Peace River flood-susceptible oxbow lake in the northern Peace sector of the PAD to quantitatively discriminate sources of naturally occurring alkylated PAHs (fossil and modern biomass). A radiocarbon mass balance quantified a predominantly natural petrogenic source (93% petrogenic, 7% forest fire) for alkylated PAHs during the past ∼50 years. Additionally, a significant petrogenic component determined for retene, a compound usually considered a biomarker for softwood combustion, suggests that its use as a unique forest fire indicator may not be suitable in PAD sediments receiving Peace watershed-derived fluvial inputs.
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How we treat myelofibrosis after failure of JAK inhibitors.
Pardanani, Animesh; Tefferi, Ayalew
2018-06-04
The introduction of JAK inhibitors, leading to regulatory approval of ruxolitinib, represents a major therapeutic advance in myelofibrosis. Most patients experience reduction in splenomegaly and improved quality of life from symptom improvement. It is a paradox however that, despite inhibition of signaling downstream of disease-related driver mutations, JAK inhibitor treatment is not associated with consistent molecular or pathologic responses in myelofibrosis. Furthermore, there are important limitations to JAK inhibitor therapy including development of dose-limiting cytopenias and/or non-hematological toxicities such as neuropathy or opportunistic infections. Over half the patients discontinue treatment within three years of starting treatment. While data are sparse, clinical outcome after JAK inhibitor 'failure' is likely poor; consequently, it is important to understand patterns of failure to select appropriate salvage treatment(s). An algorithmic approach, particularly one that incorporates cytogenetics/molecular data, is most helpful in selecting stem cell transplant candidates. Treatment of transplant-ineligible patients relies on a problem-based approach that includes use of investigational drugs, or consideration of splenectomy or radiotherapy. Data from early-phase ruxolitinib combination studies, despite promising pre-clinical data, has not shown clear benefit over monotherapy thus far. Development of effective treatment strategies for myelofibrosis patients failing JAK inhibitors remains a major unmet need. Copyright © 2018 American Society of Hematology.
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Insomnia and sleep apnea in midlife women: prevalence and consequences to health and functioning
Kline, Christopher E.; Nowakowski, Sara
2015-01-01
Sleep disturbance is common during the menopausal transition, with numerous downstream consequences to health and functioning, including reduced quality of life, impaired mental health, and increased physical health morbidity. Insomnia affects approximately 50% of midlife women and is characterized by nocturnal symptoms of difficulties initiating or maintaining sleep (or both) and daytime symptoms that impair occupational, social, or other components of functioning. In addition, approximately 20% of midlife women develop sleep-disordered breathing during the menopausal transition. This commentary summarizes the prevalence, risk factors, and treatment options for each of these sleep disorders in midlife women, with specific focus on first-line treatments for insomnia (cognitive behavioral therapy for insomnia) and sleep-disordered breathing (continuous positive airway pressure) and unique considerations for treating sleep disorders in midlife women. Future directions are also discussed. PMID:26097736
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NASA Astrophysics Data System (ADS)
Yadav, Amita; Pandey, Jitendra
2018-06-01
The pattern of N/P/Si stoichiometry, although an important driver regulating river ecology, has received limited research attention for Ganga River. We investigated shifts in N/P/Si stoichiometry and ecological nutrient limitation as influenced by Varanasi urban core along a 37-km-long stretch of Ganga River. We also assessed the trophic status of the river in relation to shifting elemental stoichiometry. Together with point sources, atmospheric deposition coupled surface runoff appeared important factors leading to N/P/Si stoichiometric imbalances along the study stretch. The N/P and Si/P ratios declined downstream from 15.5 to 6.5 and 15.7 to 4.4, respectively, whereas N/Si increased from 1.01 to 1.6. Significant negative correlation of N/Si with biogenic silica to chlorophyll a (Chl a) ratios, and biogenic silica to phycocyanin ratios indicated increased growth of non-siliceous algae downstream signifying N and Si limitation with possible implications on food-web dynamics and feedback processes in the river in long run.
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Novel mechanism of conjoined gene formation in the human genome.
Kim, Ryong Nam; Kim, Aeri; Choi, Sang-Haeng; Kim, Dae-Soo; Nam, Seong-Hyeuk; Kim, Dae-Won; Kim, Dong-Wook; Kang, Aram; Kim, Min-Young; Park, Kun-Hyang; Yoon, Byoung-Ha; Lee, Kang Seon; Park, Hong-Seog
2012-03-01
Recently, conjoined genes (CGs) have emerged as important genetic factors necessary for understanding the human genome. However, their formation mechanism and precise structures have remained mysterious. Based on a detailed structural analysis of 57 human CG transcript variants (CGTVs, discovered in this study) and all (833) known CGs in the human genome, we discovered that the poly(A) signal site from the upstream parent gene region is completely removed via the skipping or truncation of the final exon; consequently, CG transcription is terminated at the poly(A) signal site of the downstream parent gene. This result led us to propose a novel mechanism of CG formation: the complete removal of the poly(A) signal site from the upstream parent gene is a prerequisite for the CG transcriptional machinery to continue transcribing uninterrupted into the intergenic region and downstream parent gene. The removal of the poly(A) signal sequence from the upstream gene region appears to be caused by a deletion or truncation mutation in the human genome rather than post-transcriptional trans-splicing events. With respect to the characteristics of CG sequence structures, we found that intergenic regions are hot spots for novel exon creation during CGTV formation and that exons farther from the intergenic regions are more highly conserved in the CGTVs. Interestingly, many novel exons newly created within the intergenic and intragenic regions originated from transposable element sequences. Additionally, the CGTVs showed tumor tissue-biased expression. In conclusion, our study provides novel insights into the CG formation mechanism and expands the present concepts of the genetic structural landscape, gene regulation, and gene formation mechanisms in the human genome.
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Schrag, Tobias A; Westhues, Matthias; Schipprack, Wolfgang; Seifert, Felix; Thiemann, Alexander; Scholten, Stefan; Melchinger, Albrecht E
2018-04-01
The ability to predict the agronomic performance of single-crosses with high precision is essential for selecting superior candidates for hybrid breeding. With recent technological advances, thousands of new parent lines, and, consequently, millions of new hybrid combinations are possible in each breeding cycle, yet only a few hundred can be produced and phenotyped in multi-environment yield trials. Well established prediction approaches such as best linear unbiased prediction (BLUP) using pedigree data and whole-genome prediction using genomic data are limited in capturing epistasis and interactions occurring within and among downstream biological strata such as transcriptome and metabolome. Because mRNA and small RNA (sRNA) sequences are involved in transcriptional, translational and post-translational processes, we expect them to provide information influencing several biological strata. However, using sRNA data of parent lines to predict hybrid performance has not yet been addressed. Here, we gathered genomic, transcriptomic (mRNA and sRNA) and metabolomic data of parent lines to evaluate the ability of the data to predict the performance of untested hybrids for important agronomic traits in grain maize. We found a considerable interaction for predictive ability between predictor and trait, with mRNA data being a superior predictor for grain yield and genomic data for grain dry matter content, while sRNA performed relatively poorly for both traits. Combining mRNA and genomic data as predictors resulted in high predictive abilities across both traits and combining other predictors improved prediction over that of the individual predictors alone. We conclude that downstream "omics" can complement genomics for hybrid prediction, and, thereby, contribute to more efficient selection of hybrid candidates. Copyright © 2018 by the Genetics Society of America.
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Sevelda, Florian; Mayr, Lisa; Kubista, Bernd; Lötsch, Daniela; van Schoonhoven, Sushilla; Windhager, Reinhard; Pirker, Christine; Micksche, Michael; Berger, Walter
2015-11-02
Enhanced signalling via the epidermal growth factor receptor (EGFR) is a hallmark of multiple human carcinomas. However, in recent years data have accumulated that EGFR might also be hyperactivated in human sarcomas. Aim of this study was to investigate the influence of EGFR inhibition on cell viability and its interaction with chemotherapy response in osteosarcoma cell lines. We have investigated a panel of human osteosarcoma cell lines regarding EGFR expression and downstream signalling. To test its potential applicability as therapeutic target, inhibition of EGFR by gefitinib was combined with osteosarcoma chemotherapeutics and cell viability, migration, and cell death assays were performed. Osteosarcoma cells expressed distinctly differing levels of functional EGFR reaching in some cases high amounts. Functionality of EGFR in osteosarcoma cells was proven by EGF-mediated activation of both MAPK and PI3K/AKT pathway (determined by phosphorylation of ERK1/2, AKT, S6, and GSK3β). The EGFR-specific inhibitor gefitinib blocked EGF-mediated downstream signal activation. At standard in vitro culture conditions, clinically achievable gefitinib doses demonstrated only limited cytotoxic activity, however, significantly reduced long-term colony formation and cell migration. In contrast, under serum-starvation conditions active gefitinib doses were distinctly reduced while EGF promoted starvation survival. Importantly, gefitinib significantly supported the anti-osteosarcoma activities of doxorubicin and methotrexate regarding cell survival and migratory potential. Our data suggest that EGFR is not a major driver for osteosarcoma cell growth but contributes to starvation- and chemotherapy-induced stress survival. Consequently, combination approaches including EGFR inhibitors should be evaluated for treatment of high-grade osteosarcoma patients.
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Pre- and post-fire pollutant loads in an urban fringe watershed in Southern California.
Burke, M P; Hogue, T S; Kinoshita, A M; Barco, J; Wessel, C; Stein, E D
2013-12-01
Post-fire runoff has the potential to be a large source of contaminants to downstream areas. However, the magnitude of this effect in urban fringe watersheds adjacent to large sources of airborne contaminants is not well documented. The current study investigates the impacts of wildfire on stormwater contaminant loading from the upper Arroyo Seco watershed, burned in 2009. This watershed is adjacent to the Greater Los Angeles, CA, USA area and has not burned in over 60 years. Consequently, it acts as a sink for regional urban pollutants and presents an opportunity to study the impacts of wildfire. Pre- and post-fire storm samples were collected and analyzed for basic cations, trace metals, and total suspended solids. The loss of vegetation and changes in soil properties from the fire greatly increased the magnitude of storm runoff, resulting in sediment-laden floods carrying high concentrations of particulate-bound constituents. Post-fire concentrations and loads were up to three orders of magnitude greater than pre-fire values for many trace metals, including lead and cadmium. A shift was also observed in the timing of chemical delivery, where maximum suspended sediment, trace metal, and cation concentrations coincided with, rather than preceded, peak discharge in the post-fire runoff, amplifying the fire's impacts on mass loading. The results emphasize the importance of sediment delivery as a primary mechanism for post-fire contaminant transport and suggest that traditional management practices that focus on treating only the early portion of storm runoff may be less effective following wildfire. We also advocate that watersheds impacted by regional urban pollutants have the potential to pose significant risk for downstream communities and ecosystems after fire.
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Downstream impacts of dams: shifts in benthic invertivorous fish assemblages
Granzotti, Rafaela Vendrametto; Miranda, Leandro E.; Agostinho, Angelo A.; Gomes, Luiz Carlos
2018-01-01
Impoundments alter connectivity, sediment transport and water discharge in rivers and floodplains, affecting recruitment, habitat and resource availability for fish including benthic invertivorous fish, which represent an important link between primary producers and higher trophic levels in tropical aquatic ecosystems. We investigated long-term changes to water regime, water quality, and invertivorous fish assemblages pre and post impoundment in three rivers downstream of Porto Primavera Reservoir in south Brazil: Paraná, Baía and Ivinhema rivers. Impacts were distinct in the Paraná River, which is fully obstructed by the dam, less evident in the Baía River which is partially obstructed by the dam, but absent in the unimpounded Ivinhema River. Changes in water regime were reflected mainly as changes in water-level fluctuation with little effect on timing. Water transparency increased in the Paraná River post impoundment but did not change in the Baía and Ivinhema rivers. Changes in fish assemblages included a decrease in benthic invertivorous fish in the Paraná River and a shift in invertivorous fish assemblage structure in the Baía and Paraná rivers but not in the unimpounded Ivinhema River. Changes in water regime and water transparency, caused by impoundment, directly or indirectly impacted invertivorous fish assemblages. Alterations of fish assemblages following environmental changes have consequences over the entire ecosystem, including a potential decrease in the diversity of mechanisms for energy flow. We suggest that keeping existing unimpounded tributaries free of dams, engineering artificial floods, and intensive management of fish habitat within the floodplain may preserve native fish assemblages and help maintain functionality and ecosystem services in highly impounded rivers.
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On the forest cover–water yield debate: from demand- to supply-side thinking
Ellison, David; N Futter, Martyn; Bishop, Kevin
2012-01-01
Several major articles from the past decade and beyond conclude the impact of reforestation or afforestation on water yield is negative: additional forest cover will reduce and removing forests will raise downstream water availability. A second group of authors argue the opposite: planting additional forests should raise downstream water availability and intensify the hydrologic cycle. Obtaining supporting evidence for this second group of authors has been more difficult due to the larger scales at which the positive effects of forests on the water cycle may be seen. We argue that forest cover is inextricably linked to precipitation. Forest-driven evapotranspiration removed from a particular catchment contributes to the availability of atmospheric moisture vapor and its cross-continental transport, raising the likelihood of precipitation events and increasing water yield, in particular in continental interiors more distant from oceans. Seasonal relationships heighten the importance of this phenomenon. We review the arguments from different scales and perspectives. This clarifies the generally beneficial relationship between forest cover and the intensity of the hydrologic cycle. While evidence supports both sides of the argument – trees can reduce runoff at the small catchment scale – at larger scales, trees are more clearly linked to increased precipitation and water availability. Progressive deforestation, land conversion from forest to agriculture and urbanization have potentially negative consequences for global precipitation, prompting us to think of forest ecosystems as global public goods. Policy-making attempts to measure product water footprints, estimate the value of ecosystem services, promote afforestation, develop drought mitigation strategies and otherwise manage land use must consider the linkage of forests to the supply of precipitation.
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Green Infrastructure, Groundwater and the Sustainable City
NASA Astrophysics Data System (ADS)
Band, L. E.
2014-12-01
The management of water is among the most important attributes of urbanization. Provision of sufficient quantities and quality of freshwater, treatment and disposal of wastewater and flood protection are critical for urban sustainability. Over the last century, two major shifts in water management paradigms have occurred, the first to improve public health with the provision of infrastructure for centralized sanitary effluent collection and treatment, and the rapid drainage and routing of stormwater. A current shift in paradigm is now occurring in response to the unintended consequences of sanitary and stormwater management, which have degraded downstream water bodies and shifted flood hazard downstream. Current infrastructure is being designed and implemented to retain, rather than rapidly drain, stormwater, with a focus on infiltration based methods. In urban areas, this amounts to a shift in hydrologic behavior to depression focused recharge. While stormwater is defined as surface flow resulting from developed areas, an integrated hydrologic systems approach to urban water management requires treatment of the full critical zone. In urban areas this extends from the top of the vegetation and building canopy, to a subsurface depth including natural soils, fill, saprolite and bedrock. In addition to matric and network flow in fracture systems, an urban "karst" includes multiple generations of current and past infrastructure, which has developed extensive subsurface pipe networks for supply and drainage, enhancing surface/groundwater flows and exchange. In this presentation, Band will discuss the need to focus on the urban critical zone, and the development and adaptation of new modeling and analytical approaches to understand and plan green infrastructure based on surface/groundwater/ecosystem interactions, and implications for the restoration and new design of cities.
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Vaughn, Caryn C; Atkinson, Carla L; Julian, Jason P
2015-01-01
Extreme hydro-meteorological events such as droughts are becoming more frequent, intense, and persistent. This is particularly true in the south central USA, where rapidly growing urban areas are running out of water and human-engineered water storage and management are leading to broad-scale changes in flow regimes. The Kiamichi River in southeastern Oklahoma, USA, has high fish and freshwater mussel biodiversity. However, water from this rural river is desired by multiple urban areas and other entities. Freshwater mussels are large, long-lived filter feeders that provide important ecosystem services. We ask how observed changes in mussel biomass and community composition resulting from drought-induced changes in flow regimes might lead to changes in river ecosystem services. We sampled mussel communities in this river over a 20-year period that included two severe droughts. We then used laboratory-derived physiological rates and river-wide estimates of species-specific mussel biomass to estimate three aggregate ecosystem services provided by mussels over this time period: biofiltration, nutrient recycling (nitrogen and phosphorus), and nutrient storage (nitrogen, phosphorus, and carbon). Mussel populations declined over 60%, and declines were directly linked to drought-induced changes in flow regimes. All ecosystem services declined over time and mirrored biomass losses. Mussel declines were exacerbated by human water management, which has increased the magnitude and frequency of hydrologic drought in downstream reaches of the river. Freshwater mussels are globally imperiled and declining around the world. Summed across multiple streams and rivers, mussel losses similar to those we document here could have considerable consequences for downstream water quality although lost biofiltration and nutrient retention. While we cannot control the frequency and severity of climatological droughts, water releases from reservoirs could be used to augment stream flows and prevent compounded anthropogenic stressors. PMID:25859334
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Simple Method for Markerless Gene Deletion in Multidrug-Resistant Acinetobacter baumannii
Oh, Man Hwan; Lee, Je Chul; Kim, Jungmin
2015-01-01
The traditional markerless gene deletion technique based on overlap extension PCR has been used for generating gene deletions in multidrug-resistant Acinetobacter baumannii. However, the method is time-consuming because it requires restriction digestion of the PCR products in DNA cloning and the construction of new vectors containing a suitable antibiotic resistance cassette for the selection of A. baumannii merodiploids. Moreover, the availability of restriction sites and the selection of recombinant bacteria harboring the desired chimeric plasmid are limited, making the construction of a chimeric plasmid more difficult. We describe a rapid and easy cloning method for markerless gene deletion in A. baumannii, which has no limitation in the availability of restriction sites and allows for easy selection of the clones carrying the desired chimeric plasmid. Notably, it is not necessary to construct new vectors in our method. This method utilizes direct cloning of blunt-end DNA fragments, in which upstream and downstream regions of the target gene are fused with an antibiotic resistance cassette via overlap extension PCR and are inserted into a blunt-end suicide vector developed for blunt-end cloning. Importantly, the antibiotic resistance cassette is placed outside the downstream region in order to enable easy selection of the recombinants carrying the desired plasmid, to eliminate the antibiotic resistance cassette via homologous recombination, and to avoid the necessity of constructing new vectors. This strategy was successfully applied to functional analysis of the genes associated with iron acquisition by A. baumannii ATCC 19606 and to ompA gene deletion in other A. baumannii strains. Consequently, the proposed method is invaluable for markerless gene deletion in multidrug-resistant A. baumannii. PMID:25746991
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Ferrinho, Paulo; Dramé, Mohammed; Tumusiime, Prosper
2013-01-01
Chad is one of the countries supported by the GAVI-Alliance that remains with unsatisfactory vaccination coverage. This paper tries to understand the main barriers to better coverage. These barriers were categorised as up or downstream against the health system building blocks as proposed by WHO and compared with barriers and activities identified by the country in its health system's strengthening grant proposal as approved by the GAVI Alliance in 2007. Data were collected using a modified Delphi system and by analysis of grant and annual report documents. Most of the activities anticipated under the GAVI health system's strengthening proposal are activities targeting downstream barriers (the neglect of upstream issues is of major importance in a decentralised state like Chad) and aligned with, not complementary to, immunization services strengthening activities. Further, both set of cash grants are blind to important recommendations such as the need to address barriers at the level of leadership and governance and at the level of the financing system and also about initiatives to promote community demand of vaccination services. IN CHAD SLOW VACCINATION PROGRESS IS AGGRAVATED BY SEVERAL CONTEXTUAL BARRIERS: the size of the country, the low population density, the nomadic nature of a significant part of its peoples, the recent civil war, associated with civil unrest and political instability and its geographical localization. In this situation it would be important to sustain downstream operations (the major focus of the ISS grant) while taking a long term view of the needs of the health system. The GAVI effectively supports downstream operations, but neglects the long term view.
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Mothes, Patricia A; Vallance, James W.
2015-01-01
Lahars are volcanic debris flows that are dubbed primary when triggered by eruptive activity or secondary when triggered by other factors such as heavy rainfall after eruptive activity has waned. Variation in time and space of the proportion of sediment to water within a lahar dictates lahar flow phase and the resultant sedimentary character of deposits. Characteristics of source material and of debris eroded and incorporated during flow downstream may strongly affect the grain-size composition of flowing lahars and their deposits. Lahars borne on the flanks of two steep-sided stratocones in Ecuador exemplify two important lahar types. Glacier-clad Cotopaxi volcano has been a producer of primary lahars that flow great distances downstream. Such primary lahars include those of both clast-rich and matrix-rich composition—some of which have flowed as far as 325 km to the Pacific Ocean. Cotopaxi's last important eruption in 1877 generated formidable syneruptive lahars comparable in size to those that buried Armero, Colombia, following the 1985 eruption of Nevado del Ruiz volcano. In contrast, ash-producing eruptive activity during the past 15 years at Tungurahua volcano has generated a continual supply of fresh volcaniclastic debris that is regularly remobilized by precipitation. Between 2000 and 2011, 886 rain-generated lahars were registered at Tungurahua. These two volcanoes pose dramatically different hazards to nearby populations. At Tungurahua, the frequency and small sizes of lahars have resulted in effective mitigation measures. At Cotopaxi 137 years have passed since the last important lahar-producing eruption, and there is now a high-risk situation for more than 100,000 people living in downstream valleys.
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Ferrinho, Paulo; Dramé, Mohammed; Tumusiime, Prosper
2013-01-01
Introduction Chad is one of the countries supported by the GAVI-Alliance that remains with unsatisfactory vaccination coverage. This paper tries to understand the main barriers to better coverage. Methods These barriers were categorised as up or downstream against the health system building blocks as proposed by WHO and compared with barriers and activities identified by the country in its health system's strengthening grant proposal as approved by the GAVI Alliance in 2007. Data were collected using a modified Delphi system and by analysis of grant and annual report documents. Results Most of the activities anticipated under the GAVI health system's strengthening proposal are activities targeting downstream barriers (the neglect of upstream issues is of major importance in a decentralised state like Chad) and aligned with, not complementary to, immunization services strengthening activities. Further, both set of cash grants are blind to important recommendations such as the need to address barriers at the level of leadership and governance and at the level of the financing system and also about initiatives to promote community demand of vaccination services. Conclusion In Chad slow vaccination progress is aggravated by several contextual barriers: the size of the country, the low population density, the nomadic nature of a significant part of its peoples, the recent civil war, associated with civil unrest and political instability and its geographical localization. In this situation it would be important to sustain downstream operations (the major focus of the ISS grant) while taking a long term view of the needs of the health system. The GAVI effectively supports downstream operations, but neglects the long term view. PMID:24106572
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Valente, Rita S.
2015-01-01
ABSTRACT Pectobacterium wasabiae (previously known as Erwinia carotovora) is an important plant pathogen that regulates the production of plant cell wall-degrading enzymes through an N-acyl homoserine lactone-based quorum sensing system and through the GacS/GacA two-component system (also known as ExpS/ExpA). At high cell density, activation of GacS/GacA induces the expression of RsmB, a noncoding RNA that is essential for the activation of virulence in this bacterium. A genetic screen to identify regulators of RsmB revealed that mutants defective in components of a putative Trk potassium transporter (trkH and trkA) had decreased rsmB expression. Further analysis of these mutants showed that changes in potassium concentration influenced rsmB expression and consequent tissue damage in potato tubers and that this regulation required an intact Trk system. Regulation of rsmB expression by potassium via the Trk system occurred even in the absence of the GacS/GacA system, demonstrating that these systems act independently and are both required for full activation of RsmB and for the downstream induction of virulence in potato infection assays. Overall, our results identified potassium as an essential environmental factor regulating the Rsm system, and the consequent induction of virulence, in the plant pathogen P. wasabiae. IMPORTANCE Crop losses from bacterial diseases caused by pectolytic bacteria are a major problem in agriculture. By studying the regulatory pathways involved in controlling the expression of plant cell wall-degrading enzymes in Pectobacterium wasabiae, we showed that the Trk potassium transport system plays an important role in the regulation of these pathways. The data presented further identify potassium as an important environmental factor in the regulation of virulence in this plant pathogen. We showed that a reduction in virulence can be achieved by increasing the extracellular concentration of potassium. Therefore, this work highlights how elucidation of the mechanisms involved in regulating virulence can lead to the identification of environmental factors that can influence the outcome of infection. PMID:26483524
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Lost at sea: genetic, oceanographic and meteorological evidence for storm-forced dispersal.
Monzón-Argüello, C; Dell'Amico, F; Morinière, P; Marco, A; López-Jurado, L F; Hays, Graeme C; Scott, Rebecca; Marsh, Robert; Lee, Patricia L M
2012-08-07
For many species, there is broad-scale dispersal of juvenile stages and/or long-distance migration of individuals and hence the processes that drive these various wide-ranging movements have important life-history consequences. Sea turtles are one of these paradigmatic long-distance travellers, with hatchlings thought to be dispersed by ocean currents and adults often shuttling between distant breeding and foraging grounds. Here, we use multi-disciplinary oceanographic, atmospheric and genetic mixed stock analyses to show that juvenile turtles are encountered 'downstream' at sites predicted by currents. However, in some cases, unusual occurrences of juveniles are more readily explained by storm events and we show that juvenile turtles may be displaced thousands of kilometres from their expected dispersal based on prevailing ocean currents. As such, storms may be a route by which unexpected areas are encountered by juveniles which may in turn shape adult migrations. Increased stormy weather predicted under climate change scenarios suggests an increasing role of storms in dispersal of sea turtles and other marine groups with life-stages near the ocean surface.
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TRPM7 controls mesenchymal features of breast cancer cells by tensional regulation of SOX4.
Kuipers, Arthur J; Middelbeek, Jeroen; Vrenken, Kirsten; Pérez-González, Carlos; Poelmans, Geert; Klarenbeek, Jeffrey; Jalink, Kees; Trepat, Xavier; van Leeuwen, Frank N
2018-07-01
Mechanically induced signaling pathways are important drivers of tumor progression. However, if and how mechanical signals affect metastasis or therapy response remains poorly understood. We previously found that the channel-kinase TRPM7, a regulator of cellular tension implicated in mechano-sensory processes, is required for breast cancer metastasis in vitro and in vivo. Here, we show that TRPM7 contributes to maintaining a mesenchymal phenotype in breast cancer cells by tensional regulation of the EMT transcription factor SOX4. The functional consequences of SOX4 knockdown closely mirror those produced by TRPM7 knockdown. By traction force measurements, we demonstrate that TRPM7 reduces cytoskeletal tension through inhibition of myosin II activity. Moreover, we show that SOX4 expression and downstream mesenchymal markers are inversely regulated by cytoskeletal tension and matrix rigidity. Overall, our results identify SOX4 as a transcription factor that is uniquely sensitive to cellular tension and indicate that TRPM7 may contribute to breast cancer progression by tensional regulation of SOX4. Copyright © 2018 The Author(s). Published by Elsevier B.V. All rights reserved.
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Alternative intronic promoters in development and disease.
Vacik, Tomas; Raska, Ivan
2017-05-01
Approximately 20,000 mammalian genes are estimated to encode between 250 thousand and 1 million different proteins. This enormous diversity of the mammalian proteome is caused by the ability of a single-gene locus to encode multiple protein isoforms. Protein isoforms encoded by one gene locus can be functionally distinct, and they can even have antagonistic functions. One of the mechanisms involved in creating this proteome complexity is alternative promoter usage. Alternative intronic promoters are located downstream from their canonical counterparts and drive the expression of alternative RNA isoforms that lack upstream exons. These upstream exons can encode some important functional domains, and proteins encoded by alternative mRNA isoforms can be thus functionally distinct from the full-length protein encoded by canonical mRNA isoforms. Since any misbalance of functionally distinct protein isoforms is likely to have detrimental consequences for the cell and the whole organism, their expression must be precisely regulated. Misregulation of alternative intronic promoters is frequently associated with various developmental defects and diseases including cancer, and it is becoming increasingly clear that this phenomenon deserves more attention.
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Adverse consequences of neonatal antibiotic exposure.
Cotten, Charles M
2016-04-01
Antibiotics have not only saved lives and improved outcomes, but they also influence the evolving microbiome. This review summarizes reports on neonatal infections and variation in antibiotic utilization, discusses the emergence of resistant organisms, and presents data from human neonates and animal models demonstrating the impact of antibiotics on the microbiome, and how microbiome alterations impact health. The importance of antibiotic stewardship is also discussed. Infections increase neonatal morbidity and mortality. Furthermore, the clinical presentation of infections can be subtle, prompting clinicians to empirically start antibiotics when infection is a possibility. Antibiotic-resistant infections are a growing problem. Cohort studies have identified extensive center variations in antibiotic usage and associations between antibiotic exposures and outcomes. Studies of antibiotic-induced microbiome alterations and downstream effects on the developing immune system have increased our understanding of the mechanisms underlying the associations between antibiotics and adverse outcomes. The emergence of resistant microorganisms and recent evidence linking antibiotic practice variations with health outcomes has led to the initiation of antibiotic stewardship programs. The review encourages practitioners to assess local antibiotic use with regard to local microbiology, and to adopt steps to reduce infections and use antibiotics wisely.
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Whittington, P N; George, N
1992-08-05
The optimization of microbial flocculation for subsequent biomass separation must relate the floc properties to separation process criteria. The effects of flocculant type, dose, and hydrodynamic conditions on floc formation in laminar tube flow were determined for an Escherichia coli system. Combined with an on-line aggregation sensor, this technique allows the flocculation process to be rapidly optimized. This is important, because interbatch variation in fermentation broth has consequences for flocculation control and subsequent downstream processing. Changing tube diameter and length while maintaining a constant flow rate allowed independent study of the effects of shear and time on the flocculation rate and floc characteristics. Tube flow at higher shear rates increased the rate and completeness of flocculation, but reduced the maximum floc size attained. The mechanism for this size limitation does not appear to be fracture or erosion of existing flocs. Rearrangement of particles within the flocs appears to be most likely. The Camp number predicted the extent of flocculation obtained in terms of the reduction in primary particle number, but not in terms of floc size.
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General introduction: recombinant protein production and purification of insoluble proteins.
Ferrer-Miralles, Neus; Saccardo, Paolo; Corchero, José Luis; Xu, Zhikun; García-Fruitós, Elena
2015-01-01
Proteins are synthesized in heterologous systems because of the impossibility to obtain satisfactory yields from natural sources. The production of soluble and functional recombinant proteins is among the main goals in the biotechnological field. In this context, it is important to point out that under stress conditions, protein folding machinery is saturated and this promotes protein misfolding and, consequently, protein aggregation. Thus, the selection of the optimal expression organism and the most appropriate growth conditions to minimize the formation of insoluble proteins should be done according to the protein characteristics and downstream requirements. Escherichia coli is the most popular recombinant protein expression system despite the great development achieved so far by eukaryotic expression systems. Besides, other prokaryotic expression systems, such as lactic acid bacteria and psychrophilic bacteria, are gaining interest in this field. However, it is worth mentioning that prokaryotic expression system poses, in many cases, severe restrictions for a successful heterologous protein production. Thus, eukaryotic systems such as mammalian cells, insect cells, yeast, filamentous fungus, and microalgae are an interesting alternative for the production of these difficult-to-express proteins.
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NASA Astrophysics Data System (ADS)
Finger, David
2015-04-01
Since the ninth century when the first settlers arrived in Iceland the island has undergone deforestation and subsequent vegetation degradation and soil erosion. Almost the entire birch forest and woodland, which originally covered ~ 25% of the nation, have been deforested through wood cutting and overgrazing. Consequently, soil erosion seriously affects over 40% of the country. During the last 50 years extensive drainage of wetlands has taken place. Furthermore, about 75% of Iceland electricity production comes from hydropower plants, constructed along the main rivers. Along with seismic and volcanic activities the above mentioned anthropogenic impacts continuously altered the hydro-geomorphic connectivity in many parts of the island. In the framework of ongoing efforts to restore ecosystems and their services in Iceland a thorough understanding of the hydro-geomorphic processes is essential. Field observations and numerical models are crucial tools to adopt appropriate management strategies and help decision makers establish sustainable governance strategies. Sediment transport models have been used in the past to investigate the impacts of hydropower dams on sediment transport in downstream rivers (Finger et al., 2006). Hydropower operations alter the turbidity dynamics in downstream freshwater systems, affecting visibility and light penetration into the water, leading to significant changes in primary production (Finger et al., 2007a). Overall, the interruption of connectivity by physical obstructions can affect the entire food chain, hampering the fishing yields in downstream waters (Finger et al., 2007b). In other locations hydraulic connectivity through retreating glaciers assures water transfer from upstream to downstream areas. The drastically retreat of glaciers can raise concerns of future water availability in remote mountain areas (Finger et al., 2013). Furthermore, the drastic reduction of glacier mass also jeopardizes the water availability for hydropower production (Finger et al., 2012). All these factors reveal the importance of a thorough understanding of hydro-geomorphic connectivity to adopt adequate water management strategies. The presentation will conclude by outlining how the above presented methods can be applied to Icelandic study sites to help water managers and policy makers to adopt resilient based policies regarding the challenges of future climate change impacts. References: Finger, D., M. Schmid, and A. Wuest (2006), Effects of upstream hydropower operation on riverine particle transport and turbidity in downstream lakes, Water Resour. Res., 42(8), doi: 10.1029/2005wr004751. Finger, D., P. Bossard, M. Schmid, L. Jaun, B. Müller, D. Steiner, E. Schaffer, M. Zeh, and A. Wüest (2007a), Effects of alpine hydropower operations on primary production in a downstream lake, Aquatic Sciences, 69(2), 240-256, doi: 10.1007/s00027-007-0873-6. Finger, D., M. Schmid, and A. Wüest (2007b), Comparing effects of oligotrophication and upstream hydropower dams on plankton and productivity in perialpine lakes, Water Resour. Res., 43(12), W12404, doi: 10.1029/2007WR005868. Finger, D., G. Heinrich, A. Gobiet, and A. Bauder (2012), Projections of future water resources and their uncertainty in a glacierized catchment in the Swiss Alps and the subsequent effects on hydropower production during the 21st century, Water Resour. Res., 48, doi: 10.1029/2011wr010733, W02521. Finger, D., A. Hugentobler, M. Huss, A. Voinesco, H. R. Wernli, D. Fischer, E. Weber, P.-Y. Jeannin, M. Kauzlaric, A. Wirz, T. Vennemann, F. Hüsler, B. Schädler, and R. Weingartner (2013), Identification of glacial melt water runoff in a karstic environment and its implication for present and future water availability, Hydrol. Earth Syst. Sci., 17, 3261-3277, doi: 10.5194/hess-17-3261-2013.
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The Effect of Forward-Facing Steps on Stationary Crossflow Instability Growth and Breakdown
NASA Technical Reports Server (NTRS)
Eppink, Jenna L.
2018-01-01
The e?ect of a forward-facing step on stationary cross?ow transition was studied using standard stereo particle image velocimetry (PIV) and time-resolved PIV. Step heights ranging from 53 to 71% of the boundary-layer thickness were studied in detail. The steps above a critical step height of approximately 60% of the boundary-layer thickness had a signi?cant impact on the stationary cross?ow growth downstream of the step. For the critical cases, the stationary cross?ow amplitude grew suddenly downstream of the step, decayed for a short region, then grew again. The adverse pressure gradient upstream of the step resulted in a region of cross?ow reversal. A secondary set of vortices, rotating in the opposite direction to the primary vortices, developed underneath the uplifted primary vortices. The wall-normal velocity disturbance (V' ) created by these secondary vortices impacted the step, and is believed to feed into the strong vortex that developed downstream of the step. A large but very short negative cross?ow region formed for a short region downstream of the step due to a sharp inboard curvature of the streamlines near the wall. For the larger step height cases, a cross?ow-reversal region formed just downstream of the strong negative cross?ow region. This cross?ow reversal region is believed to play an important role in the growth of the stationary cross?ow vortices downstream of the step, and may be a good indication of the critical forward-facing step height.
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Clinical, pathological and functional characterization of riboflavin-responsive neuropathy
Manole, Andreea; Jaunmuktane, Zane; Hargreaves, Iain; Ludtmann, Marthe H R; Salpietro, Vincenzo; Bello, Oscar D; Pope, Simon; Pandraud, Amelie; Horga, Alejandro; Scalco, Renata S; Li, Abi; Ashokkumar, Balasubramaniem; Lourenço, Charles M; Heales, Simon; Horvath, Rita; Chinnery, Patrick F; Toro, Camilo; Singleton, Andrew B; Jacques, Thomas S; Abramov, Andrey Y; Muntoni, Francesco; Hanna, Michael G; Reilly, Mary M; Revesz, Tamas; Kullmann, Dimitri M
2017-01-01
Abstract Brown-Vialetto-Van Laere syndrome represents a phenotypic spectrum of motor, sensory, and cranial nerve neuropathy, often with ataxia, optic atrophy and respiratory problems leading to ventilator-dependence. Loss-of-function mutations in two riboflavin transporter genes, SLC52A2 and SLC52A3, have recently been linked to Brown-Vialetto-Van Laere syndrome. However, the genetic frequency, neuropathology and downstream consequences of riboflavin transporter mutations are unclear. By screening a large cohort of 132 patients with early-onset severe sensory, motor and cranial nerve neuropathy we confirmed the strong genetic link between riboflavin transporter mutations and Brown-Vialetto-Van Laere syndrome, identifying 22 pathogenic mutations in SLC52A2 and SLC52A3, 14 of which were novel. Brain and spinal cord neuropathological examination of two cases with SLC52A3 mutations showed classical symmetrical brainstem lesions resembling pathology seen in mitochondrial disease, including severe neuronal loss in the lower cranial nerve nuclei, anterior horns and corresponding nerves, atrophy of the spinothalamic and spinocerebellar tracts and posterior column–medial lemniscus pathways. Mitochondrial dysfunction has previously been implicated in an array of neurodegenerative disorders. Since riboflavin metabolites are critical components of the mitochondrial electron transport chain, we hypothesized that reduced riboflavin transport would result in impaired mitochondrial activity, and confirmed this using in vitro and in vivo models. Electron transport chain complex I and complex II activity were decreased in SLC52A2 patient fibroblasts, while global knockdown of the single Drosophila melanogaster riboflavin transporter homologue revealed reduced levels of riboflavin, downstream metabolites, and electron transport chain complex I activity. This in turn led to abnormal mitochondrial membrane potential, respiratory chain activity and morphology. Riboflavin transporter knockdown in Drosophila also resulted in severely impaired locomotor activity and reduced lifespan, mirroring patient pathology, and these phenotypes could be partially rescued using a novel esterified derivative of riboflavin. Our findings expand the genetic, clinical and neuropathological features of Brown-Vialetto-Van Laere syndrome, implicate mitochondrial dysfunction as a downstream consequence of riboflavin transporter gene defects, and validate riboflavin esters as a potential therapeutic strategy. PMID:29053833
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Clinical, pathological and functional characterization of riboflavin-responsive neuropathy.
Manole, Andreea; Jaunmuktane, Zane; Hargreaves, Iain; Ludtmann, Marthe H R; Salpietro, Vincenzo; Bello, Oscar D; Pope, Simon; Pandraud, Amelie; Horga, Alejandro; Scalco, Renata S; Li, Abi; Ashokkumar, Balasubramaniem; Lourenço, Charles M; Heales, Simon; Horvath, Rita; Chinnery, Patrick F; Toro, Camilo; Singleton, Andrew B; Jacques, Thomas S; Abramov, Andrey Y; Muntoni, Francesco; Hanna, Michael G; Reilly, Mary M; Revesz, Tamas; Kullmann, Dimitri M; Jepson, James E C; Houlden, Henry
2017-11-01
Brown-Vialetto-Van Laere syndrome represents a phenotypic spectrum of motor, sensory, and cranial nerve neuropathy, often with ataxia, optic atrophy and respiratory problems leading to ventilator-dependence. Loss-of-function mutations in two riboflavin transporter genes, SLC52A2 and SLC52A3, have recently been linked to Brown-Vialetto-Van Laere syndrome. However, the genetic frequency, neuropathology and downstream consequences of riboflavin transporter mutations are unclear. By screening a large cohort of 132 patients with early-onset severe sensory, motor and cranial nerve neuropathy we confirmed the strong genetic link between riboflavin transporter mutations and Brown-Vialetto-Van Laere syndrome, identifying 22 pathogenic mutations in SLC52A2 and SLC52A3, 14 of which were novel. Brain and spinal cord neuropathological examination of two cases with SLC52A3 mutations showed classical symmetrical brainstem lesions resembling pathology seen in mitochondrial disease, including severe neuronal loss in the lower cranial nerve nuclei, anterior horns and corresponding nerves, atrophy of the spinothalamic and spinocerebellar tracts and posterior column-medial lemniscus pathways. Mitochondrial dysfunction has previously been implicated in an array of neurodegenerative disorders. Since riboflavin metabolites are critical components of the mitochondrial electron transport chain, we hypothesized that reduced riboflavin transport would result in impaired mitochondrial activity, and confirmed this using in vitro and in vivo models. Electron transport chain complex I and complex II activity were decreased in SLC52A2 patient fibroblasts, while global knockdown of the single Drosophila melanogaster riboflavin transporter homologue revealed reduced levels of riboflavin, downstream metabolites, and electron transport chain complex I activity. This in turn led to abnormal mitochondrial membrane potential, respiratory chain activity and morphology. Riboflavin transporter knockdown in Drosophila also resulted in severely impaired locomotor activity and reduced lifespan, mirroring patient pathology, and these phenotypes could be partially rescued using a novel esterified derivative of riboflavin. Our findings expand the genetic, clinical and neuropathological features of Brown-Vialetto-Van Laere syndrome, implicate mitochondrial dysfunction as a downstream consequence of riboflavin transporter gene defects, and validate riboflavin esters as a potential therapeutic strategy. © The Author (2017). Published by Oxford University Press on behalf of the Guarantors of Brain.
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Wipfli, M.S.; Richardson, J.S.; Naiman, R.J.
2007-01-01
Headwater streams make up a large proportion of the total length and watershed area of fluvial networks, and are partially characterized by the large volume of organic matter (large wood, detritus, and dissolved organic matter) and invertebrate inputs from the riparian forest, relative to stream size. Much of those inputs are exported to downstream reaches through time where they potentially subsidize river communities. The relative rates, timing, and conversion processes that carry inputs from small streams to downstream reaches are reasonably well quantified. For example, larger particles are converted to smaller particles, which are more easily exported. Also, dissolved organic matter and surface biofilms are converted to larger particles which can be more easily intercepted by consumers. However, the quality of these materials as it affects biological activity downstream is not well known, nor is the extent to which timing permits biological use of those particles. These ecological unknowns need to be resolved. Further, land uses may disrupt and diminish material transport to downstream reaches by removing sources (e.g., forest harvest), by affecting transport and decomposition processes (e.g., flow regulation, irrigation, changes in biotic communities), and by altering mechanisms of storage within headwaters (e.g., channelization). We present conceptual models of energy and nutrient fluxes that outline small stream processes and pathways important to downstream communities, and we identify informational gaps that, if filled, could significantly advance the understanding of linkages between headwater streams and larger rivers. The models, based on empirical evidence and best professional judgment, suggest that navigable waters are significantly influenced by headwater streams through hydrological and ecological connectivities, and land use can dramatically influence these natural connectivities, impacting downstream riverine ecosystems. ?? 2007 American Water Resources Association.
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Van Leeuwen, C H A; Dokk, T; Haugen, T O; Kiffney, P M; Museth, J
2017-06-01
Behaviour of early life stages of the salmonid European grayling Thymallus thymallus was investigated by assessing the timing of larval downstream movement from spawning areas, the depth at which larvae moved and the distribution of juvenile fish during summer in two large connected river systems in Norway. Trapping of larvae moving downstream and electrofishing surveys revealed that T. thymallus larvae emerging from the spawning gravel moved downstream predominantly during the night, despite light levels sufficient for orientation in the high-latitude study area. Larvae moved in the water mostly at the bottom layer close to the substratum, while drifting debris was caught in all layers of the water column. Few young-of-the-year still resided close to the spawning areas in autumn, suggesting large-scale movement (several km). Together, these observations show that there may be a deliberate, active component to downstream movement of T. thymallus during early life stages. This research signifies the importance of longitudinal connectivity for T. thymallus in Nordic large river systems. Human alterations of flow regimes and the construction of reservoirs for hydropower may not only affect the movement of adult fish, but may already interfere with active movement behaviour of fish during early life stages. © 2017 The Fisheries Society of the British Isles.
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Urke, H A; Arnekleiv, J V; Nilsen, T O; Nilssen, K J
2014-01-01
This study investigated the development of hypo-osmoregulatory capacity and timing of downstream migration in wild Atlantic salmon Salmo salar smolts from the River Stjørdalselva and stocked young-of-the-year (YOY), derived S. salar smolts from the tributary River Dalåa. Both wild and stocked S. salar smolts developed seawater (SW) tolerance in early May, persisting through June, measured as their ability to regulate plasma osmolality and chloride following 24 h SW (salinity = 35) exposure. Although the majority of downstream migration among the stocked S. salar smolts occurred later than observed in their wild counterparts, the development of SW tolerance occurred concurrently. The wild S. salar from Stjørdalselva and stocked YOY smolts from the River Dalåa started to migrate on the same cumulative day-degrees (D°). The study revealed no downstream migration before development of SW tolerance. This emphasizes the importance of incorporating physiological status when studying environmental triggers for downstream migration of S. salar smolts. Overall, these findings suggest that the onset of smolt migration in stocked S. salar smolts was within the smolt window from an osmoregulatory point of view. © 2014 The Fisheries Society of the British Isles.
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Lee, S; Yeo, I-Y; Lang, M W; Sadeghi, A M; McCarty, G W; Moglen, G E; Evenson, G R
2018-06-07
Despite recognizing the importance of wetlands in the Coastal Plain of the Chesapeake Bay Watershed (CBW) in terms of ecosystem services, our understanding of wetland functions has mostly been limited to individual wetlands and overall catchment-scale wetland functions have rarely been investigated. This study is aimed at assessing the cumulative impacts of wetlands on watershed hydrology for an agricultural watershed within the Coastal Plain of the CBW using the Soil and Water Assessment Tool (SWAT). We employed two improved wetland modules for enhanced representation of physical processes and spatial distribution of riparian wetlands (RWs) and geographically isolated wetlands (GIWs). This study focused on GIWs as their hydrological impacts on watershed hydrology are poorly understood and GIWs are poorly protected. Multiple wetland scenarios were prepared by removing all or portions of the baseline GIW condition indicated by the U.S. Fish and Wildlife Service National Wetlands Inventory geospatial dataset. We further compared the impacts of GIWs and RWs on downstream flow (i.e., streamflow at the watershed outlet). Our simulation results showed that GIWs strongly influenced downstream flow by altering water transport mechanisms in upstream areas. Loss of all GIWs reduced both water routed to GIWs and water infiltrated into the soil through the bottom of GIWs, leading to an increase in surface runoff of 9% and a decrease in groundwater flow of 7% in upstream areas. These changes resulted in increased variability of downstream flow in response to extreme flow conditions. GIW loss also induced an increase in month to month variability of downstream flow and a decrease in the baseflow contribution to streamflow. Loss of all GIWs was shown to cause a greater fluctuation of downstream flow than loss of all RWs for this study site, due to a greater total water storage capacity of GIWs. Our findings indicate that GIWs play a significant role in controlling hydrological processes in upstream areas and downstream flow and, therefore, protecting GIWs is important for enhanced hydrological resilience to extreme flow conditions in this region. Copyright © 2018 Elsevier Ltd. All rights reserved.
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Avery, Luke A.; Korman, Josh; Persons, William R.
2015-01-01
Negative interactions of Rainbow Trout Oncorhynchus mykiss with endangered Humpback Chub Gila cypha pose challenges to the operation of Glen Canyon Dam (GCD) to manage for both species in the Colorado River. Operations to enhance the Rainbow Trout tailwater fishery may lead to an increase in downstream movement of the trout to areas where they are likely to interact with Humpback Chub. We evaluated the effects of dam operations on age-0 Rainbow Trout in the tailwater fishery to inform managers about how GCD operations could benefit a tailwater fishery for Rainbow Trout; although this could affect a Humpback Chub population farther downstream. A near year-long increase in discharge at GCD in 2011 enabled us to evaluate whether high and stable flows led to increased spawning and production of age-0 Rainbow Trout compared with other years. Rainbow Trout spawning was monitored by fitting a model to observed redd counts to estimate the number of redds created over a spawning season. Data collected during electrofishing trips in July–September and November were used to acquire age-0 trout population and mortality rate estimates. We found that high and stable flows in 2011 resulted in 3,062 redds (1.7 times the mean of all survey years) and a population estimate of 686,000 age-0 Rainbow Trout (second highest on record). Despite high initial abundance, mortality remained low through the year (0.0043%/d) resulting in significant recruitment with a record high November population estimate of 214,000 age-0 Rainbow Trout. Recent monitoring indicates this recruitment event was followed by an increase in downstream migration, which may lead to increased interactions with downstream populations of Humpback Chub. Consequently, while our results indicate that manipulating flow at GCD can be used to manage Rainbow Trout spawning and recruitment, fisheries managers should use flow manipulation in moderation to minimize downstream migration in order to reduce negative interactions with other species in the Colorado River.
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Wang, Fushun; Wang, Baoli; Liu, Cong-Qiang; Liu, Xiaolong; Gao, Yang; Zhang, Jing; Li, Shuang
2014-06-01
Reservoirs created for hydropower production have become an important feature impacting a river. Understanding the effects of river impoundment on the downstream environment is critical to decision-making for water resource protection. The changes caused by impoundment are changes in water quality and the resulting effect on the phytoplankton community structure. The impacts caused by a series of reservoirs along a river are still not well understood. In this study, we conducted an investigation of five reservoirs along the Maotiao River, China. We found that a series of impoundments plays a role in decreasing the phytoplankton biomass in downstream reservoirs. Within the studied area, nitrogen is not a limiting factor for phytoplankton growth. The ratio of silicon to phosphorus (Si:P) can become a major factor in the regulation of phytoplankton community structure. The Si:P ratio increased from upstream to downstream reservoirs, causing a concurrent increase in the percentage of Bacillariophyta, particularly during the winter. In addition, our results indicate that the creation of dams eliminates Si limitation downstream.
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Headwater streams are the dominant land-water interface across much of the landscape and provide many important ecological services. Cycling and transport of various carbon fractions, which serve as important food sources for downstream aquatic ecosystems, are among the important...
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Irestig, Magnus; Timpka, Toomas
2010-02-01
We set out to examine design conflict resolution tactics used in development of large information systems for health services and to outline the design consequences for these tactics. Discourse analysis methods were applied to data collected from meetings conducted during the development of a web-based system in a public health context. We found that low risk tactics were characterized by design issues being managed within the formal mandate and competences of the design group. In comparison, high risk tactics were associated with irresponsible compromises, i.e. decisions being passed on to others or to later phases of the design process. The consequence of this collective disregard of issues such as responsibility and legitimacy is that the system design will be impossible to implement in factual health service contexts. The results imply that downstream responsibility issues have to be continuously dealt with in system development in health services.
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Headwater streams are the dominant land-water interface across much of the landscape and provide many important ecological services. Cycling and transport of various carbon fractions, which serve as important food sources for downstream aquatic ecosystems, are among the important...
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NASA Astrophysics Data System (ADS)
Tsunetaka, H.; Hotta, N.; Imaizumi, F.; Hayakawa, Y. S.
2015-12-01
Large sediment movements, such as deep-seated landslides, produce unstable sediment over the long term. Most of the unstable sediment in a mountain torrent is discharged via the development of debris flows through entrainment. Consequently, after a large sediment movement, debris flows have long-term effects on the watershed regime. However, the development of debris flows in mountain torrents is poorly understood, since the topography is more complicated than downstream. We compared temporal changes in topography to examine how topography affects the development of flows. The study site was the Ichino-sawa subwatershed in the Ohya-kuzure landslide, Japan. Unstable sediment has been produced continuously since the landslide occurred in 1707. Several topographic surveys using a terrestrial laser scanner (TLS) and aerial shoots by an unmanned aerial vehicle (UAV) were performed between November 2011 (TLS) or November 2014 (UAV) and August 2015. High-resolution digital elevation models were created from the TLS and UAV results to detect temporal topographic changes. Debris flow occurrences and rainfall were also monitored using interval cameras and rain gauges. Downstream, the deposit depth decreased after the debris flows. Upstream, more complex changes were detected due to surges in the debris flows, which not only induced entrainment, but were also deposited in the valley floor. Furthermore, sediment was supplied from the stream bank during the debris flows. Consequently, several debris flows of different magnitudes were observed, although the rainfall conditions did not differ significantly. The results imply that the magnitude of the debris flows was affected by successive sediment movement resulting from the changing of the topographic conditions.
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Long-term morphological evolution of a morphologically active man-made stream in the Netherlands
NASA Astrophysics Data System (ADS)
Eekhout, J.; Hoitink, T.
2010-12-01
Around 1770, a straight artificial canal (Gelderns-Nierskanaal) has been constructed between the River Niers and the River Meuse, crossing the border between Germany and the Netherlands, with the purpose of reducing flood risk in the downstream reaches of the River Niers. Whereas the German part of the canal is kept straight throughout time, the Dutch part was left unprotected and developed into a morphodynamically active stream featuring a meandering planform. The current planform and in-channel morphology are analyzed using airborne LiDAR data and historical topographic maps. Around the turn of the 18th century, the first attempts were made to make detailed topographic maps. From this time on, at least 16 topographic maps of the area around the stream were made. With the use of these historical topographic maps, a reconstruction is made of the planimetric shape of the stream over a period of 240 years. The LiDAR data show old meander belts at several places around the stream. Those belts compare well with the topographic maps. The sinuosity increases from upstream to downstream. This could be a consequence of the valley slope, where the upper part is flat and the slope increases in downstream direction. Besides, the LiDAR data show that erosion resulted in an incised valley, with dimensions to 50 m in width and 6 m in depth. Both the datasets are combined to make an estimate of the historical sediment budget of the stream.
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Steady finite-Reynolds-number flows in three-dimensional collapsible tubes
NASA Astrophysics Data System (ADS)
Hazel, Andrew L.; Heil, Matthias
2003-07-01
A fully coupled finite-element method is used to investigate the steady flow of a viscous fluid through a thin-walled elastic tube mounted between two rigid tubes. The steady three-dimensional Navier Stokes equations are solved simultaneously with the equations of geometrically nonlinear Kirchhoff Love shell theory. If the transmural (internal minus external) pressure acting on the tube is sufficiently negative then the tube buckles non-axisymmetrically and the subsequent large deformations lead to a strong interaction between the fluid and solid mechanics. The main effect of fluid inertia on the macroscopic behaviour of the system is due to the Bernoulli effect, which induces an additional local pressure drop when the tube buckles and its cross-sectional area is reduced. Thus, the tube collapses more strongly than it would in the absence of fluid inertia. Typical tube shapes and flow fields are presented. In strongly collapsed tubes, at finite values of the Reynolds number, two ’jets‘ develop downstream of the region of strongest collapse and persist for considerable axial distances. For sufficiently high values of the Reynolds number, these jets impact upon the sidewalls and spread azimuthally. The consequent azimuthal transport of momentum dramatically changes the axial velocity profiles, which become approximately uTheta-shaped when the flow enters the rigid downstream pipe. Further convection of momentum causes the development of a ring-shaped velocity profile before the ultimate return to a parabolic profile far downstream.
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Pesticides from wastewater treatment plant effluents affect invertebrate communities.
Münze, Ronald; Hannemann, Christin; Orlinskiy, Polina; Gunold, Roman; Paschke, Albrecht; Foit, Kaarina; Becker, Jeremias; Kaske, Oliver; Paulsson, Elin; Peterson, Märit; Jernstedt, Henrik; Kreuger, Jenny; Schüürmann, Gerrit; Liess, Matthias
2017-12-01
We quantified pesticide contamination and its ecological impact up- and downstream of seven wastewater treatment plants (WWTPs) in rural and suburban areas of central Germany. During two sampling campaigns, time-weighted average pesticide concentrations (c TWA ) were obtained using Chemcatcher® passive samplers; pesticide peak concentrations were quantified with event-driven samplers. At downstream sites, receiving waters were additionally grab sampled for five selected pharmaceuticals. Ecological effects on macroinvertebrate structure and ecosystem function were assessed using the biological indicator system SPEAR pesticides (SPEcies At Risk) and leaf litter breakdown rates, respectively. WWTP effluents substantially increased insecticide and fungicide concentrations in receiving waters; in many cases, treated wastewater was the exclusive source for the neonicotinoid insecticides acetamiprid and imidacloprid in the investigated streams. During the ten weeks of the investigation, five out of the seven WWTPs increased in-stream pesticide toxicity by a factor of three. As a consequence, at downstream sites, SPEAR values and leaf litter degradation rates were reduced by 40% and 53%, respectively. The reduced leaf litter breakdown was related to changes in the macroinvertebrate communities described by SPEAR pesticides and not to altered microbial activity. Neonicotinoids showed the highest ecological relevance for the composition of invertebrate communities, occasionally exceeding the Regulatory Acceptable Concentrations (RACs). In general, considerable ecological effects of insecticides were observed above and below regulatory thresholds. Fungicides, herbicides and pharmaceuticals contributed only marginally to acute toxicity. We conclude that pesticide retention of WWTPs needs to be improved. Copyright © 2017 Elsevier B.V. All rights reserved.
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Aeroacoustic catastrophes: upstream cusp beaming in Lilley's equation.
Stone, J T; Self, R H; Howls, C J
2017-05-01
The downstream propagation of high-frequency acoustic waves from a point source in a subsonic jet obeying Lilley's equation is well known to be organized around the so-called 'cone of silence', a fold catastrophe across which the amplitude may be modelled uniformly using Airy functions. Here we show that acoustic waves not only unexpectedly propagate upstream, but also are organized at constant distance from the point source around a cusp catastrophe with amplitude modelled locally by the Pearcey function. Furthermore, the cone of silence is revealed to be a cross-section of a swallowtail catastrophe. One consequence of these discoveries is that the peak acoustic field upstream is not only structurally stable but also at a similar level to the known downstream field. The fine structure of the upstream cusp is blurred out by distributions of symmetric acoustic sources, but peak upstream acoustic beaming persists when asymmetries are introduced, from either arrays of discrete point sources or perturbed continuum ring source distributions. These results may pose interesting questions for future novel jet-aircraft engine designs where asymmetric source distributions arise.
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Molecular turnover, the H3.3 dilemma and organismal aging (hypothesis).
Saade, Evelyne; Pirozhkova, Iryna; Aimbetov, Rakhan; Lipinski, Marc; Ogryzko, Vasily
2015-06-01
The H3.3 histone variant has been a subject of increasing interest in the field of chromatin studies due to its two distinguishing features. First, its incorporation into chromatin is replication independent unlike the replication-coupled deposition of its canonical counterparts H3.1/2. Second, H3.3 has been consistently associated with an active state of chromatin. In accordance, this histone variant should be expected to be causally involved in the regulation of gene expression, or more generally, its incorporation should have downstream consequences for the structure and function of chromatin. This, however, leads to an apparent paradox: In cells that slowly replicate in the organism, H3.3 will accumulate with time, opening the way to aberrant effects on heterochromatin. Here, we review the indications that H3.3 is expected both to be incorporated in the heterochromatin of slowly replicating cells and to retain its functional downstream effects. Implications for organismal aging are discussed. © 2015 The Authors. Aging Cell published by the Anatomical Society and John Wiley & Sons Ltd.
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Zhang, Shurong; Bai, Yijuan; Wen, Xin; Ding, Aizhong; Zhi, Jianhui
2018-04-22
Human activities impose important disturbances on both organic and inorganic chemistry in fluvial systems. In this study, we investigated the intra-annual and downstream variations of dissolved organic carbon (DOC), dissolved organic matter (DOM) excitation-emission matrix fluorescence (EEM) with parallel factor analysis (PARAFAC), major ions, and dissolved inorganic nitrogen (DIN) species in a mountainous tributary of the Yellow River, China. Both DOM quantity and quality, as represented by DOC and DOM fluorescence respectively, changed spatially and seasonally in the studied region. Fluorescence intensity of tryptophan-like components (C3) were found much higher at the populated downstream regions than in the undisturbed forested upstream regions. Seasonally, stronger fluorescence intensity of protein-like components (C3 and C4) was observed in the low-flow period (December) and in the medium-flow period (March) than in the high-flow period (May), particularly for the downstream reaches, reflecting the dominant impacts of wastewater pollution in the downstream regions. In contrast to the protein-like fluorescence, humic-like fluorescence components C1 and C2 exhibited distinctly higher intensity in the high-flow period with smaller spatial variation indicating strong flushing effect of increasing water discharge on terrestrial-sourced humic-like materials in the high-flow period. Pollution-affected dissolved inorganic ions, particularly Na + , Cl - , and NH 4 + -N, showed similar spatial and seasonal variations with protein-like fluorescence of DOM. The significant positive correlations between protein-like fluorescence of DOM and pollution-affected ions, particularly Na + , Cl - , and NH 4 + -N, suggested that there were similar pollution sources and transportation pathways of both inorganic and organic pollutants in the region. The combination of DOM fluorescence properties and inorganic ions could provide an important reference for the pollution source characterization and river basin management.
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Seasonal drought effects on the water quality of the Biobío River, Central Chile.
Yevenes, Mariela A; Figueroa, Ricardo; Parra, Oscar
2018-05-01
Quantifying the effect of droughts on ecosystem functions is essential to the development of coastal zone and river management under a changing climate. It is widely acknowledged that climate change is increasing the frequency and intensity of droughts, which can affect important ecosystem services, such as the regional supply of clean water. Very little is understood about how droughts affect the water quality of Chilean high flow rivers. This paper intends to investigate the effect of an, recently identified, unprecedented drought in Chile (2010-2015), on the Biobío River water quality, (36°45'-38°49' S and 71°00'-73°20' W), Central Chile. This river is one of the largest Chilean rivers and it provides abundant freshwater. Water quality (water temperature, pH, dissolved oxygen, electrical conductivity, biological oxygen demand, total suspended solids, chloride, sodium, nutrients, and trace metals), during the drought (2010-2015), was compared with a pre-drought period (2000-2009) over two reaches (upstream and downstream) of the river. Multivariate analysis and seasonal Mann-Kendall trend analyses and a Theil-Sen estimator were employed to analyze trends and slopes of the reaches. Results indicated a significant decreased trend in total suspended solids and a slightly increasing trend in water temperature and EC, major ions, and trace metals (chrome, lead, iron, and cobalt), mainly in summer and autumn during the drought. The reduced variability upstream suggested that nutrient and metal concentrations were more constant than downstream. The results evidenced, due to the close relationship between river discharge and water quality, a slightly decline of the water quality downstream of the Biobío River during drought period, which could be attenuated in a post-drought period. These results displayed that water quality is vulnerable to reductions in flow, through historical and emerging solutes/contaminants and induced pH mobilization. Consequently, seasonal changes and a progressive reduction of river flow affect the ecosystem functionality in this key Chilean river. The outcomes from this research can be used to improve how low flow conditions and the effects of a reduction in the river volume and discharge are assessed, which is the case under the scenario of more frequent drought periods.
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A simplified water temperature model for the Colorado River below Glen Canyon Dam
Wright, S.A.; Anderson, C.R.; Voichick, N.
2009-01-01
Glen Canyon Dam, located on the Colorado River in northern Arizona, has affected the physical, biological and cultural resources of the river downstream in Grand Canyon. One of the impacts to the downstream physical environment that has important implications for the aquatic ecosystem is the transformation of the thermal regime from highly variable seasonally to relatively constant year-round, owing to hypolimnetic releases from the upstream reservoir, Lake Powell. Because of the perceived impacts on the downstream aquatic ecosystem and native fish communities, the Glen Canyon Dam Adaptive Management Program has considered modifications to flow releases and release temperatures designed to increase downstream temperatures. Here, we present a new model of monthly average water temperatures below Glen Canyon Dam designed for first-order, relatively simple evaluation of various alternative dam operations. The model is based on a simplified heat-exchange equation, and model parameters are estimated empirically. The model predicts monthly average temperatures at locations up to 421 km downstream from the dam with average absolute errors less than 0.58C for the dataset considered. The modelling approach used here may also prove useful for other systems, particularly below large dams where release temperatures are substantially out of equilibrium with meteorological conditions. We also present some examples of how the model can be used to evaluate scenarios for the operation of Glen Canyon Dam.
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Chang, Ming Xian; Zhang, Jie
2017-07-15
Pre-mRNA splicing is the process by which introns are removed and the protein coding elements assembled into mature mRNAs. Alternative pre-mRNA splicing provides an important source of transcriptome and proteome complexity through selectively joining different coding elements to form mRNAs, which encode proteins with similar or distinct functions. In mammals, previous studies have shown the role of alternative splicing in regulating the function of the immune system, especially in the regulation of T-cell activation and function. As lower vertebrates, teleost fish mainly rely on a large family of pattern recognition receptors (PRRs) to recognize pathogen-associated molecular patterns (PAMPs) from various invading pathogens. In this review, we summarize recent advances in our understanding of alternative splicing of piscine PRRs including peptidoglycan recognition proteins (PGRPs), nucleotide binding and oligomerization domain (NOD)-like receptors (NLRs), retinoic acid-inducible gene-I (RIG-I)-like receptors (RLRs) and their downstream signaling molecules, compared to splicing in mammals. We also discuss what is known and unknown about the function of splicing isoforms in the innate immune responses against pathogens infection in mammals and teleost fish. Finally, we highlight the consequences of alternative splicing in the innate immune system and give our view of important directions for future studies.
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Living Rivers: Importance of Andes-Amazon Connectivity and Consequences of Hydropower Development
NASA Astrophysics Data System (ADS)
Anderson, E.
2016-12-01
The inherent dynamism of rivers along elevational and longitudinal gradients underpins freshwater biodiversity, ecosystem function, and ecosystem services in the Andean-Amazon. While this region covers only a small part of the entire Amazon Basin, its influences on downstream ecology, biogeochemistry, and human wellbeing are disproportionate with its relative small size. Seasonal flow pulses from Andean rivers maintain habitat, signal migratory fishes, and export sediment, nutrients, and organic matter to distant ecosystems—like lowland Amazonia and the Atlantic coast of Brazil. Rivers are key transportation routes, and freshwater fisheries are a primary protein source for the >30 million people that inhabit the Amazon Basin. Numerous cultural traditions depend on free-flowing Andean rivers; examples include Kukama beliefs in the underwater cities of the Marañon River, where people who have drowned in rivers whose bodies are not recovered go to live, or the pre-dawn bathing rituals of the Peruvian Shawi, who gain energy and connect with ancestors in cold, fast-flowing Andean waters. Transformations in the Andean-Amazon landscape—in particular from dams—threaten to compromise flows critical for human and ecosystem wellbeing. Presently, at least 250 hydropower dams are in operation, under construction, or proposed for Andean-Amazon rivers. This presentation will discuss regional trends in hydropower development, quantify effects of existing and proposed dams on Andean-Amazon connectivity, and examine the social and cultural importance of free-flowing Andean-Amazon rivers.
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Melis, Theodore S.; Grams, Paul E.; Kennedy, Theodore A.; Ralston, Barbara E.; Robinson, Christopher T.; Schmidt, John C.; Schmit, Lara M.; Valdez, Richard A.; Wright, Scott A.
2011-01-01
Three high-flow experiments (HFEs) were conducted by the U.S. Department of the Interior at Glen Canyon Dam, Arizona, in March 1996, November 2004, and March 2008. Also known as artificial or controlled floods, these scheduled releases of water above the dam's powerplant capacity were designed to mimic pre-dam seasonal flooding on the Colorado River. The goal of the HFEs was to determine whether high flows could be used to benefit important downstream resources in Glen Canyon National Recreation Area and Grand Canyon National Park that have been affected by the existence and operation of Glen Canyon Dam. These downstream resources include native fish, particularly endangered humpback chub (Gila cypha), terrestrial and aquatic sandbar habitats, cultural sites, and recreational resources. This Fact Sheet summarizes HFE-related studies published since 1996 and outlines a possible strategy for implementing future HFEs.
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Warren, Dana R.; Dunham, Jason B.; Hockman-Wert, David
2014-01-01
Understanding local and geographic factors influencing species distributions is a prerequisite for conservation planning. Our objective in this study was to model local and geographic variability in elevations occupied by native and nonnative trout in the northwestern Great Basin, USA. To this end, we analyzed a large existing data set of trout presence (5,156 observations) to evaluate two fundamental factors influencing occupied elevations: climate-related gradients in geography and local constraints imposed by topography. We applied quantile regression to model upstream and downstream distribution elevation limits for each trout species commonly found in the region (two native and two nonnative species). With these models in hand, we simulated an upstream shift in elevation limits of trout distributions to evaluate potential consequences of habitat loss. Downstream elevation limits were inversely associated with latitude, reflecting regional gradients in temperature. Upstream limits were positively related to maximum stream elevation as expected. Downstream elevation limits were constrained topographically by valley bottom elevations in northern streams but not in southern streams, where limits began well above valley bottoms. Elevation limits were similar among species. Upstream shifts in elevation limits for trout would lead to more habitat loss in the north than in the south, a result attributable to differences in topography. Because downstream distributions of trout in the north extend into valley bottoms with reduced topographic relief, trout in more northerly latitudes are more likely to experience habitat loss associated with an upstream shift in lower elevation limits. By applying quantile regression to relatively simple information (species presence, elevation, geography, topography), we were able to identify elevation limits for trout in the Great Basin and explore the effects of potential shifts in these limits that could occur in response to changing climate conditions that alter streams directly (e.g., through changes in temperature and precipitation) or indirectly (e.g., through changing water use).
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Freeman, Mary C.; Pringle, C.M.; Jackson, C.R.
2007-01-01
Cumulatively, headwater streams contribute to maintaining hydrologic connectivity and ecosystem integrity at regional scales. Hydrologic connectivity is the water-mediated transport of matter, energy and organisms within or between elements of the hydrologic cycle. Headwater streams compose over two-thirds of total stream length in a typical river drainage and directly connect the upland and riparian landscape to the rest of the stream ecosystem. Altering headwater streams, e.g., by channelization, diversion through pipes, impoundment and burial, modifies fluxes between uplands and downstream river segments and eliminates distinctive habitats. The large-scale ecological effects of altering headwaters are amplified by land uses that alter runoff and nutrient loads to streams, and by widespread dam construction on larger rivers (which frequently leaves free-flowing upstream portions of river systems essential to sustaining aquatic biodiversity). We discuss three examples of large-scale consequences of cumulative headwater alteration. Downstream eutrophication and coastal hypoxia result, in part, from agricultural practices that alter headwaters and wetlands while increasing nutrient runoff. Extensive headwater alteration is also expected to lower secondary productivity of river systems by reducing stream-system length and trophic subsidies to downstream river segments, affecting aquatic communities and terrestrial wildlife that utilize aquatic resources. Reduced viability of freshwater biota may occur with cumulative headwater alteration, including for species that occupy a range of stream sizes but for which headwater streams diversify the network of interconnected populations or enhance survival for particular life stages. Developing a more predictive understanding of ecological patterns that may emerge on regional scales as a result of headwater alterations will require studies focused on components and pathways that connect headwaters to river, coastal and terrestrial ecosystems. Linkages between headwaters and downstream ecosystems cannot be discounted when addressing large-scale issues such as hypoxia in the Gulf of Mexico and global losses of biodiversity.
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Estes, Lyndon; Chen, Peng; Debats, Stephanie; Evans, Tom; Ferreira, Stefanus; Kuemmerle, Tobias; Ragazzo, Gabrielle; Sheffield, Justin; Wolf, Adam; Wood, Eric; Caylor, Kelly
2018-01-01
Land cover maps increasingly underlie research into socioeconomic and environmental patterns and processes, including global change. It is known that map errors impact our understanding of these phenomena, but quantifying these impacts is difficult because many areas lack adequate reference data. We used a highly accurate, high-resolution map of South African cropland to assess (1) the magnitude of error in several current generation land cover maps, and (2) how these errors propagate in downstream studies. We first quantified pixel-wise errors in the cropland classes of four widely used land cover maps at resolutions ranging from 1 to 100 km, and then calculated errors in several representative "downstream" (map-based) analyses, including assessments of vegetative carbon stocks, evapotranspiration, crop production, and household food security. We also evaluated maps' spatial accuracy based on how precisely they could be used to locate specific landscape features. We found that cropland maps can have substantial biases and poor accuracy at all resolutions (e.g., at 1 km resolution, up to ∼45% underestimates of cropland (bias) and nearly 50% mean absolute error (MAE, describing accuracy); at 100 km, up to 15% underestimates and nearly 20% MAE). National-scale maps derived from higher-resolution imagery were most accurate, followed by multi-map fusion products. Constraining mapped values to match survey statistics may be effective at minimizing bias (provided the statistics are accurate). Errors in downstream analyses could be substantially amplified or muted, depending on the values ascribed to cropland-adjacent covers (e.g., with forest as adjacent cover, carbon map error was 200%-500% greater than in input cropland maps, but ∼40% less for sparse cover types). The average locational error was 6 km (600%). These findings provide deeper insight into the causes and potential consequences of land cover map error, and suggest several recommendations for land cover map users. © 2017 John Wiley & Sons Ltd.
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Spatio-Temporal Migration Patterns of Pacific Salmon Smolts in Rivers and Coastal Marine Waters
Melnychuk, Michael C.; Welch, David W.; Walters, Carl J.
2010-01-01
Background Migrations allow animals to find food resources, rearing habitats, or mates, but often impose considerable predation risk. Several behavioural strategies may reduce this risk, including faster travel speed and taking routes with shorter total distance. Descriptions of the natural range of variation in migration strategies among individuals and populations is necessary before the ecological consequences of such variation can be established. Methodology/Principal Findings Movements of tagged juvenile coho, steelhead, sockeye, and Chinook salmon were quantified using a large-scale acoustic tracking array in southern British Columbia, Canada. Smolts from 13 watersheds (49 watershed/species/year combinations) were tagged between 2004–2008 and combined into a mixed-effects model analysis of travel speed. During the downstream migration, steelhead were slower on average than other species, possibly related to freshwater residualization. During the migration through the Strait of Georgia, coho were slower than steelhead and sockeye, likely related to some degree of inshore summer residency. Hatchery-reared smolts were slower than wild smolts during the downstream migration, but after ocean entry, average speeds were similar. In small rivers, downstream travel speed increased with body length, but in the larger Fraser River and during the coastal migration, average speed was independent of body length. Smolts leaving rivers located towards the northern end of the Strait of Georgia ecosystem migrated strictly northwards after ocean entry, but those from rivers towards the southern end displayed split-route migration patterns within populations, with some moving southward. Conclusions/Significance Our results reveal a tremendous diversity of behavioural migration strategies used by juvenile salmon, across species, rearing histories, and habitats, as well as within individual populations. During the downstream migration, factors that had strong effects on travel speeds included species, wild or hatchery-rearing history, watershed size and, in smaller rivers, body length. During the coastal migration, travel speeds were only strongly affected by species differences. PMID:20886121
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Szulc-Dąbrowska, Lidia; Struzik, Justyna; Ostrowska, Agnieszka; Guzera, Maciej; Toka, Felix N; Bossowska-Nowicka, Magdalena; Gieryńska, Małgorzata M; Winnicka, Anna; Nowak, Zuzanna; Niemiałtowski, Marek G
2017-01-01
Ectromelia virus (ECTV) is an orthopoxvirus responsible for mousepox, a lethal disease of certain strains of mice that is similar to smallpox in humans, caused by variola virus (VARV). ECTV, similar to VARV, exhibits a narrow host range and has co-evolved with its natural host. Consequently, ECTV employs sophisticated and host-specific strategies to control the immune cells that are important for induction of antiviral immune response. In the present study we investigated the influence of ECTV infection on immune functions of murine GM-CSF-derived bone marrow cells (GM-BM), comprised of conventional dendritic cells (cDCs) and macrophages. Our results showed for the first time that ECTV is able to replicate productively in GM-BM and severely impaired their innate and adaptive immune functions. Infected GM-BM exhibited dramatic changes in morphology and increased apoptosis during the late stages of infection. Moreover, GM-BM cells were unable to uptake and process antigen, reach full maturity and mount a proinflammatory response. Inhibition of cytokine/chemokine response may result from the alteration of nuclear translocation of NF-κB, IRF3 and IRF7 transcription factors and down-regulation of many genes involved in TLR, RLR, NLR and type I IFN signaling pathways. Consequently, GM-BM show inability to stimulate proliferation of purified allogeneic CD4+ T cells in a primary mixed leukocyte reaction (MLR). Taken together, our data clearly indicate that ECTV induces immunosuppressive mechanisms in GM-BM leading to their functional paralysis, thus compromising their ability to initiate downstream T-cell activation events.
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SOURCES AND TRANSFORMATIONS OF NITROGEN, CARBON, AND PHOSPHORUS IN THE POTOMAC RIVER ESTUARY
NASA Astrophysics Data System (ADS)
Pennino, M. J.; Kaushal, S.
2009-12-01
Global transport of nitrogen (N), carbon (C), and phosphorus (P) in river ecosystems has been dramatically altered due to urbanization. We examined the capacity of a major tributary of the Chesapeake Bay, the Potomac River, to transform carbon, nitrogen, and phosphorus inputs from the world’s largest advanced wastewater treatment facility (Washington D.C. Water and Sewer Authority). Surface water and effluent samples were collected along longitudinal transects of the Potomac River seasonally and compared to long-term interannual records of carbon, nitrogen, and phosphorus. Water samples from seasonal longitudinal transects were analyzed for dissolved organic and inorganic nitrogen and phosphorus, total organic carbon, and particulate carbon, nitrogen, and phosphorus. The source and quality of organic matter was characterized using fluorescence spectroscopy, excitation emission matrices (EEMs), and PARAFAC modeling. Sources of nitrate were tracked using stable isotopes of nitrogen and oxygen. Along the river network stoichiometric ratios of C, N, and P were determined across sites and related to changes in flow conditions. Land use data and historical water chemistry data were also compared to assess the relative importance of non-point sources from land-use change versus point-sources of carbon, nitrogen, and phosphorus. Preliminary data from EEMs suggested that more humic-like organic matter was important above the wastewater treatment plant, but more protein-like organic matter was present below the treatment plant. Levels of nitrate and ammonia showed increases within the vicinity of the wastewater treatment outfall, but decreased rapidly downstream, potentially indicating nutrient uptake and/or denitrification. Phosphate levels decreased gradually along the river with a small increase near the wastewater treatment plant and a larger increase and decrease further downstream near the high salinity zone. Total organic carbon levels show a small decrease downstream. Ecological stoichiometric ratios along the river indicate increases in C/N ratios downstream, but no corresponding trend with C/P ratios. The N/P ratios increased directly below the treatment plant and then decreased gradually downstream. The C/N/P ratios remained level until the last two sampling stations within 20 miles of the Chesapeake Bay, where there is a large increase. Despite large inputs, there may be large variations in sources and ecological stoichiometry along rivers and estuaries, and knowledge of these transformations will be important in predicting changes in the amounts, forms, and stoichiometry of nutrient loads to coastal waters.
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Sediment size of surface floodplain sediments along a large lowland river
NASA Astrophysics Data System (ADS)
Swanson, K. M.; Day, G.; Dietrich, W. E.
2007-12-01
Data on size distribution of surface sediment across a floodplain should place important constraints of modeling of floodplain deposition. Diffusive or advective models would predict that, generally, grain size should decrease away from channel banks. Variations in grain size downstream along floodplains may depend on downstream fining of river bed material, exchange rate with river banks and net deposition onto the floodplain. Here we report detailed grain size analyses taken from 17 floodplain transects along 450 km (along channel distance) reach of the middle Fly River, Papua New Guinea. Field studies have documented a systematic change in floodplain characteristics downstream from forested, more topographically elevated and topography bounded by an actively shifting mainstem channel to a downstream swamp grass, low elevation topography along which the river meanders are currently stagnant. Frequency and duration of flooding increase downstream. Flooding occurs both by overbank flows and by injections of floodwaters up tributary and tie channels connected to the mainstem. Previous studies show that about 40% of the total discharge of water passes across the floodplain, and, correspondingly, about 40% of the total load is deposited on the plain - decreasing exponentially from channel bank. We find that floodplain sediment is most sandy at the channel bank. Grain size rapidly declines away from the bank, but surprisingly two trends were also observed. A relatively short distance from the bank the surface material is finest, but with further distance from the bank (out to greater than 1 km from the 250 m wide channel) clay content decreases and silt content increases. The changes are small but repeated at most of the transects. The second trend is that bank material fines downstream, corresponding to a downstream finding bed material, but once away from the bank, there is a weak tendency for a given distance away from the bank the floodplain surface deposits to slightly coarsen downstream. We also find that sand is present (about 4%) in these surface sediments out to 1 km from the channel bank. These trends are not consistent with simple lateral transport models, and other factors, including effects of flocculation, local flow patterns, and possibly dry season wind effects may matter.
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Scabies: important clinical consequences explained by new molecular studies.
Fischer, Katja; Holt, Deborah; Currie, Bart; Kemp, David
2012-01-01
In 2004, we reviewed the status of disease caused by the scabies mite Sarcoptes scabiei at the time and pointed out that very little basic research had ever been done. The reason for this was largely the lack of availability of mites for experimental purposes and, to a degree, a consequent lack of understanding of its importance, resulting in the trivial name 'itch mite'. Scabies is responsible for major morbidity in disadvantaged communities and immunocompromised patients worldwide. In addition to the physical discomfort caused by the disease, scabies infestations facilitate infection by bacterial pathogens such as Streptococcus pyogenes and Staphylococcus aureus via skin lesions, resulting in severe downstream disease such as in a high prevalence of rheumatic fever/heart disease in affected communities. We now have further evidence that in disadvantaged populations living in tropical climates, scabies rather than 'Strep throat' is an important source of S. pyogenes causing rheumatic fever and eventually rheumatic heart disease. In addition, our work has resulted in two fundamental research tools that facilitate much of the current biomedical research efforts on scabies, namely a public database containing ~45,000 scabies mite expressed sequence tags and a porcine in vivo model. Here we will discuss novel and unexpected proteins encountered in the database that appear crucial to mite survival with regard to digestion and evasion of host defence. The mode(s) of action of some of these have been at least partially revealed. Further, newly discovered molecules that may well have a similar role, such as a family of inactivated cysteine proteases, are yet to be investigated. Hence, there are now whole families of potential targets for chemical inhibitors of S. scabiei. These efforts put today's scabies research in a unique position to design and test small molecules that may specifically interfere with mite-derived molecules, such as digestive proteases and mite complement inhibitors. The porcine scabies model will be available to trial in vivo treatment with potential inhibitors. New therapies for scabies may be developed from these studies and may contribute to reduce the spread of scabies and the subsequent prevalence of bacterial skin infections and their devastating sequelae in the community. Copyright © 2012 Elsevier Ltd. All rights reserved.
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Valente, Rita S; Xavier, Karina B
2016-01-15
Pectobacterium wasabiae (previously known as Erwinia carotovora) is an important plant pathogen that regulates the production of plant cell wall-degrading enzymes through an N-acyl homoserine lactone-based quorum sensing system and through the GacS/GacA two-component system (also known as ExpS/ExpA). At high cell density, activation of GacS/GacA induces the expression of RsmB, a noncoding RNA that is essential for the activation of virulence in this bacterium. A genetic screen to identify regulators of RsmB revealed that mutants defective in components of a putative Trk potassium transporter (trkH and trkA) had decreased rsmB expression. Further analysis of these mutants showed that changes in potassium concentration influenced rsmB expression and consequent tissue damage in potato tubers and that this regulation required an intact Trk system. Regulation of rsmB expression by potassium via the Trk system occurred even in the absence of the GacS/GacA system, demonstrating that these systems act independently and are both required for full activation of RsmB and for the downstream induction of virulence in potato infection assays. Overall, our results identified potassium as an essential environmental factor regulating the Rsm system, and the consequent induction of virulence, in the plant pathogen P. wasabiae. Crop losses from bacterial diseases caused by pectolytic bacteria are a major problem in agriculture. By studying the regulatory pathways involved in controlling the expression of plant cell wall-degrading enzymes in Pectobacterium wasabiae, we showed that the Trk potassium transport system plays an important role in the regulation of these pathways. The data presented further identify potassium as an important environmental factor in the regulation of virulence in this plant pathogen. We showed that a reduction in virulence can be achieved by increasing the extracellular concentration of potassium. Therefore, this work highlights how elucidation of the mechanisms involved in regulating virulence can lead to the identification of environmental factors that can influence the outcome of infection. Copyright © 2015, American Society for Microbiology. All Rights Reserved.
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40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?
Code of Federal Regulations, 2010 CFR
2010-07-01
...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...
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40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?
Code of Federal Regulations, 2013 CFR
2013-07-01
...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...
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40 CFR 80.1235 - What gasoline is subject to the benzene requirements of this subpart?
Code of Federal Regulations, 2012 CFR
2012-07-01
...) Oxygenate added to finished gasoline, RBOB, or CBOB downstream of the refinery that produced the gasoline or import facility where the gasoline was imported. (3) Butane added to finished gasoline, RBOB, CBOB... boats that are used only in sanctioned racing events, provided that — (i) Product transfer documents...
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Miranda, Leandro E.; Bettoli, Phillip William
2010-01-01
Large impoundments, defined as those with surface area of 200 ha or greater, are relatively new aquatic ecosystems in the global landscape. They represent important economic and environmental resources that provide benefits such as flood control, hydropower generation, navigation, water supply, commercial and recreational fisheries, and various other recreational and esthetic values. Construction of large impoundments was initially driven by economic needs, and ecological consequences received little consideration. However, in recent decades environmental issues have come to the forefront. In the closing decades of the 20th century societal values began to shift, especially in the developed world. Society is no longer willing to accept environmental damage as an inevitable consequence of human development, and it is now recognized that continued environmental degradation is unsustainable. Consequently, construction of large reservoirs has virtually stopped in North America. Nevertheless, in other parts of the world construction of large reservoirs continues. The emergence of systematic reservoir management in the early 20th century was guided by concepts developed for natural lakes (Miranda 1996). However, we now recognize that reservoirs are different and that reservoirs are not independent aquatic systems inasmuch as they are connected to upstream rivers and streams, the downstream river, other reservoirs in the basin, and the watershed. Reservoir systems exhibit longitudinal patterns both within and among reservoirs. Reservoirs are typically arranged sequentially as elements of an interacting network, filter water collected throughout their watersheds, and form a mosaic of predictable patterns. Traditional approaches to fisheries management such as stocking, regulating harvest, and in-lake habitat management do not always produce desired effects in reservoirs. As a result, managers may expend resources with little benefit to either fish or fishing. Some locally expressed effects, such as turbidity and water quality, zooplankton density and size composition, or fish growth rates and assemblage composition, are the upshot of large-scale factors operating outside reservoirs and not under the direct control of reservoir managers. Realistically, abiotic and biotic conditions in reservoirs are shaped by factors working inside and outside reservoirs, with the relative importance of external factors differing among reservoirs. With this perspective, large reservoirs are viewed from a habitat standpoint within the framework of a conceptual model in which individual reservoir characteristics are influenced by both local- and landscape-scale factors (Figure 17.1). In the sections that follow, how each element of this hierarchical model influences habitat and fish assemblages in reservoirs is considered. Important in-reservoir habitat issues and reservoirs as part of larger systems, where reservoir management requires looking for real solutions outside individual reservoirs are described.
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NASA Astrophysics Data System (ADS)
Bai, Tao; Ma, Pan-pan; Kan, Yan-bin; Huang, Qiang
2017-12-01
Ecological risk assessment of river is an important content for protection and improvement of ecological environment. In this paper, taking Xiaolangdi reservoir for example, ecological risk assessments are studied based on the 1956-1997 and 2002-2008 dairy runoff data as the pre and post of construction of Xiaolangdi reservoir. Considering pre and post hydrological regime of construction of Xiaolangdi, ecological risk assessment index systems of downstream are established based on Index of Hydrologic Alteration-Range of Variability Approach method (IHA-RVA), which considering characters of flow, time, frequency, delay and change rate. Then ecological risk fuzzy comprehensive evaluation assessment model downstream is established based on risk index and RVA method. The results show that after the construction of Xiaolangdi reservoir, ecological risk occurred in the downstream of Yellow River for changed hydrological indexes, such as monthly average flow, frequency and duration of extreme annual flow and so on, which probably destroy the whole ecosystems of the river. For example, ecological risk downstream of Xiaolangdi reservoir upgrade to level two in 2008. Research results make reference values and scientific basis both in ecological risk assessment and management of reservoir after construction.
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Coexistence in streams: Do source-sink dynamics allow salamanders to persist with fish predators?
Sepulveda, A.J.; Lowe, W.H.
2011-01-01
Theory suggests that source-sink dynamics can allow coexistence of intraguild predators and prey, but empirical evidence for this coexistence mechanism is limited. We used capture-mark-recapture, genetic methods, and stable isotopes to test whether source-sink dynamics promote coexistence between stream fishes, the intraguild predator, and stream salamanders (Dicamptodon aterrimus), the intraguild prey. Salamander populations from upstream reaches without fish were predicted to maintain or supplement sink populations in downstream reaches with fish. We found instead that downstream reaches with fish were not sinks even though fish consumed salamander larvae-apparent survival, recruitment, and population growth rate did not differ between upstream and downstream reaches. There was also no difference between upstream and downstream reaches in net emigration. We did find that D. aterrimus moved frequently along streams, but believe that this is a response to seasonal habitat changes rather than intraguild predation. Our study provides empirical evidence that local-scale mechanisms are more important than dispersal dynamics to coexistence of streams salamanders and fish. More broadly, it shows the value of empirical data on dispersal and gene flow for distinguishing between local and spatial mechanisms of coexistence. ?? 2011 Springer-Verlag.
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Morphology analysis in middle-downstream area of Progo River due to the debris flow
NASA Astrophysics Data System (ADS)
Fitriadin, Ahmad Azmi; Ikhsan, Jaza'ul; Harsanto, Puji
2017-06-01
One of the problems that occur in Progo River is the formation of sediment in the downstream section. The sediment material in the upstream becomes the source of sediment at the downstream area. Excess sediment supply from the upstream causes morphological changes in a relatively short time. The morphological changes in riverbed will affect hydraulics conditions. Hydraulic has an important role in the process of aggradation and degradation in the riverbed. Furthermore, the process of erosion and sedimentation will affect the stability of the construction in the water. In Progo River, there are some buildings of infrastructure such as revetment, bridge, irrigation intake, groundsill, and weir. Based on the results of a numerical model of the hydraulic analysis system, there was approximately 87,000,000 m3 of sediment on Progo River in 2015. In fact, aggradation and degradation occurred very intensively in the middle-downstream area of Progo River. Sediment movement simulation also showed that the sediment supply of lava could prevent excessive bed degradation. Nevertheless, the absence of sediment supply will lead to bed degradation process. It indicates that the management of the sediment supply in the upstream area must be managed properly.
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Energy-saving scheme based on downstream packet scheduling in ethernet passive optical networks
NASA Astrophysics Data System (ADS)
Zhang, Lincong; Liu, Yejun; Guo, Lei; Gong, Xiaoxue
2013-03-01
With increasing network sizes, the energy consumption of Passive Optical Networks (PONs) has grown significantly. Therefore, it is important to design effective energy-saving schemes in PONs. Generally, energy-saving schemes have focused on sleeping the low-loaded Optical Network Units (ONUs), which tends to bring large packet delays. Further, the traditional ONU sleep modes are not capable of sleeping the transmitter and receiver independently, though they are not required to transmit or receive packets. Clearly, this approach contributes to wasted energy. Thus, in this paper, we propose an Energy-Saving scheme that is based on downstream Packet Scheduling (ESPS) in Ethernet PON (EPON). First, we design both an algorithm and a rule for downstream packet scheduling at the inter- and intra-ONU levels, respectively, to reduce the downstream packet delay. After that, we propose a hybrid sleep mode that contains not only ONU deep sleep mode but also independent sleep modes for the transmitter and the receiver. This ensures that the energy consumed by the ONUs is minimal. To realize the hybrid sleep mode, a modified GATE control message is designed that involves 10 time points for sleep processes. In ESPS, the 10 time points are calculated according to the allocated bandwidths in both the upstream and the downstream. The simulation results show that ESPS outperforms traditional Upstream Centric Scheduling (UCS) scheme in terms of energy consumption and the average delay for both real-time and non-real-time packets downstream. The simulation results also show that the average energy consumption of each ONU in larger-sized networks is less than that in smaller-sized networks; hence, our ESPS is better suited for larger-sized networks.
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NASA Astrophysics Data System (ADS)
Black, Kerry P.
1993-03-01
Reef-scale, eddy-resolving numerical models are applied to discriminate between local trapping of neutrally buoyant passive material coming from a natal reef versus trapping of this material on reefs downstream. A hydrodynamic model is coupled with a Lagrangian (nongridded) dispersal simulation to map the movement of material such as passive larvae within and between natural reefs. To simplify the interpretation, a number of schematic reef shapes, sizes and spacings were devised to represent the most common cases typifying Australia's Great Barrier Reef. Prior investigations have shown that coral reefs on the Great Barrier Reef may retain material for times equivalent to the pelagic dispersal period of many species. This paper explores whether larvae are more likely to settle on the natal reef, settle downstream or fail to settle at all. The modelling neglects active larval behaviour and treats the vertically well-mixed case of notionally weightless particles only. The crown-of-thorns starfish larvae with a pelagic dispersal period of at least 10 days are one example of this case. Larvae are most likely to be found near the natal reef rather than its downstream neighbour, mostly because the currents take the vertically well-mixed material around, rather than onto, the downstream reef. Of all the simulations, the highest numbers were found on natal reefs (e.g. 8% after 10 days) while downstream numbers mostly varied between 0 and 1% after 10 days. Particle numbers equalised only when spacing between the two reefs was less than the reef length (6 km), or when the downstream reef was in the direct path of the larval stream.
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Druffel, Leroy; Stiltner, Gloria J.; Keefer, Thomas N.
1979-01-01
Mackay Dam is an irrigation reservoir on the Big Lost River, Idaho, approximately 7.2 kilometers northwest of Mackay, Idaho. Consequences of possible rupture of the dam have long concerned the residents of the river valley. The presence of reactors and of a management complex for nuclear wastes on the reservation of the Idaho National Engineering Laboratory (INEL), near the river , give additional cause for concern over the consequences of a rupture of Mackay Dam. The objective of this report is to calculate and route the flood wave resulting from the hypothetical failure of Mackay Dam downstream to the INEL. Both a full and a 50 percent partial breach of this dam are investigated. Two techniques are used to develop the dam-break model. The method of characteristics is used to propagate the shock wave after the dam fails. The linear implicit finite-difference solution is used to route the flood wave after the shock wave has dissipated. The time of travel of the flood wave, duration of flooding, and magnitude of the flood are determined for eight selected sites from Mackay Dam, Idaho, through the INEL diversion. At 4.2 kilometers above the INEL diversion, peak discharges of 1,550.2 and 1,275 cubic meters per second and peak flood elevations of 1,550.3 and 1,550.2 meters were calculated for the full and partial breach, respectively. Flood discharges and flood peaks were not compared for the area downstream of the diversion because of the lack of detailed flood plain geometry. (Kosco-USGS)
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NASA Astrophysics Data System (ADS)
Ralph, Timothy; Wethered, Adam; Smith, Hugh; Heijnis, Henk
2014-05-01
Land clearance, soil tillage and grazing in agricultural catchments have liberated sediment and altered hydrological connectivity between hillslopes and channels, leading to increased sediment availability, mobilisation and delivery to rivers. The type and amount of sediment supplied to rivers is critical for fluvial geomorphology and aquatic ecosystem health. Contemporary sediment dynamics are routinely investigated using environmental radionuclides such as caesium-137 (Cs-137) and excess lead-210 (Pb-210ex), which can provide information regarding sediment source types and fluvial processes if sediment sources can be distinguished from one another and mixing models applied to representative samples. However, downstream transport, mixing and dilution of radionuclide-labelled sediment (especially from sources with low initial concentrations) can obliterate the tracer signal; sometimes before anything of geomorphological importance happens in the catchment. Can these findings be used as evidence of sediment source variations and fluvial processes when the limits of detection (of Cs-137 in particular) are being exceeded so rapidly downstream? Sediment sources and downstream sediment dynamics were investigated in Coolbaggie Creek, a major supplier of sediment to the Macquarie River in an agricultural catchment with temperate to semi-arid climate in Australia. Radionuclides were used to discriminate between the <63 micron fraction of sediment sources including forested topsoils (Cs-137 11.28 +/- 0.75 Bq/kg; Pb-210ex 181.87 +/- 20.00 Bq/kg), agricultural topsoils (Cs-137 3.21 +/- 0.26 Bq/kg; Pb-210ex 29.59 +/- 10.94 Bq/kg) and sub-soils from channel banks and gullies (Cs-137 1.45 +/- 0.47 Bq/kg; Pb-210ex 4.67 +/- 1.93 Bq/kg). Within the trunk stream, suspended sediment, organic matter and Cs-137 and Pb-210ex concentrations declined downstream. Results from a mixing model suggest that agricultural topsoils account for 95% of fine sediment entering the channel in the upper reach (<10 km long), while sub-soils account for 90 to 100% of sediment entering and being transported in the remaining ~50 km of the system. This shift in dominant sediment source material coincided with a large increase in channel cross sectional area (~20 to >200 m2) downstream, with channel expansion and gullies contributing fine sediment to the system. A lack of topsoil being supplied to the channel suggests minimal lateral connectivity between the catchment and the trunk stream in all areas apart from the upper catchment. The enlargement and entrenchment of the channel downstream has also resulted in lateral disconnection between the channel and floodplain. In this case, a rapid reduction in radionuclide concentrations downstream does coincide with hydrogeomorphic changes, supporting their use for studying short-term sediment dynamics. These findings highlight the importance of understanding hydrogeomorphic processes and connectivity when interpreting sediment source and tracer data.
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Jenks, M Harley; O'Rourke, Thomas W; Reines, Daniel
2008-06-01
The IMD2 gene in Saccharomyces cerevisiae is regulated by intracellular guanine nucleotides. Regulation is exerted through the choice of alternative transcription start sites that results in synthesis of either an unstable short transcript terminating upstream of the start codon or a full-length productive IMD2 mRNA. Start site selection is dictated by the intracellular guanine nucleotide levels. Here we have mapped the polyadenylation sites of the upstream, unstable short transcripts that form a heterogeneous family of RNAs of approximately 200 nucleotides. The switch from the upstream to downstream start sites required the Rpb9 subunit of RNA polymerase II. The enzyme's ability to locate the downstream initiation site decreased exponentially as the start was moved downstream from the TATA box. This suggests that RNA polymerase II's pincer grip is important as it slides on DNA in search of a start site. Exosome degradation of the upstream transcripts was highly dependent upon the distance between the terminator and promoter. Similarly, termination was dependent upon the Sen1 helicase when close to the promoter. These findings extend the emerging concept that distinct modes of termination by RNA polymerase II exist and that the distance of the terminator from the promoter, as well as its sequence, is important for the pathway chosen.
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E-selectin ligand-1 controls circulating prostate cancer cell rolling/adhesion and metastasis
Yasmin-Karim, Sayeda; King, Michael R.; Messing, Edward M.; Lee, Yi-Fen
2014-01-01
Circulating prostate cancer (PCa) cells preferentially roll and adhere on bone marrow vascular endothelial cells, where abundant E-selectin and stromal cell-derived factor 1 (SDF-1) are expressed, subsequently initiating a cascade of activation events that eventually lead to the development of metastases. To elucidate the roles of circulating PCa cells' rolling and adhesion behaviors in cancer metastases, we applied a dynamic cylindrical flow-based microchannel device that is coated with E-selectin and SDF-1, mimicking capillary endothelium. Using this device we captured a small fraction of rolling PCa cells. These rolling cells display higher static adhesion ability, more aggressive cancer phenotypes and stem-like properties. Importantly, mice received rolling PCa cells, but not floating PCa cells, developed cancer metastases. Genes coding for E-selectin ligands and genes associated with cancer stem cells and metastasis were elevated in rolling PCa cells. Knock down of E-selectin ligand 1(ESL-1), significantly impaired PCa cells' rolling capacity and reduced cancer aggressiveness. Moreover, ESL-1 activates RAS and MAP kinase signal cascade, consequently inducing the downstream targets. In summary, circulating PCa cells' rolling capacity contributes to PCa metastasis, and that is in part controlled by ESL-1. PMID:25301730
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Oliveira, João M.; Segurado, Pedro; Santos, José M.; Teixeira, Amílcar; Ferreira, Maria T.; Cortes, Rui V.
2012-01-01
Identifying the environmental gradients that control the functional structure of biological assemblages in reference conditions is fundamental to help river management and predict the consequences of anthropogenic stressors. Fish metrics (density of ecological guilds, and species richness) from 117 least disturbed stream reaches in several western Iberia river basins were modelled with generalized linear models in order to investigate the importance of regional- and local-scale abiotic gradients to variation in functional structure of fish assemblages. Functional patterns were primarily associated with regional features, such as catchment elevation and slope, rainfall, and drainage area. Spatial variations of fish guilds were thus associated with broad geographic gradients, showing (1) pronounced latitudinal patterns, affected mainly by climatic factors and topography, or (2) at the basin level, strong upstream-downstream patterns related to stream position in the longitudinal gradient. Maximum native species richness was observed in midsize streams in accordance with the river continuum concept. The findings of our study emphasized the need to use a multi-scale approach in order to fully assess the factors that govern the functional organization of biotic assemblages in ‘natural’ streams, as well as to improve biomonitoring and restoration of fluvial ecosystems. PMID:23029242
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Accounting for nitrogen fixation in simple models of lake nitrogen loading/export.
Ruan, Xiaodan; Schellenger, Frank; Hellweger, Ferdi L
2014-05-20
Coastal eutrophication, an important global environmental problem, is primarily caused by excess nitrogen and management efforts consequently focus on lowering watershed N export (e.g., by reducing fertilizer use). Simple quantitative models are needed to evaluate alternative scenarios at the watershed scale. Existing models generally assume that, for a specific lake/reservoir, a constant fraction of N loading is exported downstream. However, N fixation by cyanobacteria may increase when the N loading is reduced, which may change the (effective) fraction of N exported. Here we present a model that incorporates this process. The model (Fixation and Export of Nitrogen from Lakes, FENL) is based on a steady-state mass balance with loading, output, loss/retention, and N fixation, where the amount fixed is a function of the N/P ratio of the loading (i.e., when N/P is less than a threshold value, N is fixed). Three approaches are used to parametrize and evaluate the model, including microcosm lab experiments, lake field observations/budgets and lake ecosystem model applications. Our results suggest that N export will not be reduced proportionally with N loading, which needs to be considered when evaluating management scenarios.
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Modelling the effects of stranding on the Atlantic salmon population in the Dale River, Norway.
Sauterleute, Julian F; Hedger, Richard D; Hauer, Christoph; Pulg, Ulrich; Skoglund, Helge; Sundt-Hansen, Line E; Bakken, Tor Haakon; Ugedal, Ola
2016-12-15
Rapid dewatering in rivers as a consequence of hydropower operations may cause stranding of juvenile fish and have a negative impact on fish populations. We implemented stranding into an Atlantic salmon population model in order to evaluate long-term effects on the population in the Dale River, Western Norway. Furthermore, we assessed the sensitivity of the stranding model to dewatered area in comparison to biological parameters, and compared different methods for calculating wetted area, the main abiotic input parameter to the population model. Five scenarios were simulated dependent on fish life-stage, season and light level. Our simulation results showed largest negative effect on the population abundance for hydropeaking during winter daylight. Salmon smolt production had highest sensitivity to the stranding mortality of older juvenile fish, suggesting that stranding of fish at these life-stages is likely to have greater population impacts than that of earlier life-stages. Downstream retention effects on the ramping velocity were found to be negligible in the stranding model, but are suggested to be important in the context of mitigation measure design. Copyright © 2016 Elsevier B.V. All rights reserved.
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NASA Astrophysics Data System (ADS)
Tian, Linjie; Choi, Seung-Chul; Murakami, Yousuke; Allen, Joselyn; Morse, Herbert C., III; Qi, Chen-Feng; Krzewski, Konrad; Coligan, John E.
2014-01-01
Apoptotic cell (AC) clearance is essential for immune homeostasis. Here we show that mouse CD300f (CLM-1) recognizes outer membrane-exposed phosphatidylserine, and regulates the phagocytosis of ACs. CD300f accumulates in phagocytic cups at AC contact sites. Phosphorylation within CD300f cytoplasmic tail tyrosine-based motifs initiates signals that positively or negatively regulate AC phagocytosis. Y276 phosphorylation is necessary for enhanced CD300f-mediated phagocytosis through the recruitment of the p85α regulatory subunit of phosphatidylinositol-3-kinase (PI3K). CD300f-PI3K association leads to activation of downstream Rac/Cdc42 GTPase and mediates changes of F-actin that drive AC engulfment. Importantly, primary macrophages from CD300f-deficient mice have impaired phagocytosis of ACs. The biological consequence of CD300f deficiency is predisposition to autoimmune disease development, as FcγRIIB-deficient mice develop a systemic lupus erythematosus-like disease at a markedly accelerated rate if CD300f is absent. In this report we identify the mechanism and role of CD300f in AC phagocytosis and maintenance of immune homeostasis.
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Extracellular matrix components in breast cancer progression and metastasis.
Oskarsson, Thordur
2013-08-01
The extracellular matrix (ECM) is composed of highly variable and dynamic components that regulate cell behavior. The protein composition and physical properties of the ECM govern cell fate through biochemical and biomechanical mechanisms. This requires a carefully orchestrated and thorough regulation considering that a disturbed ECM can have serious consequences and lead to pathological conditions like cancer. In breast cancer, many ECM proteins are significantly deregulated and specific matrix components promote tumor progression and metastatic spread. Intriguingly, several ECM proteins that are associated with breast cancer development, overlap substantially with a group of ECM proteins induced during the state of tissue remodeling such as mammary gland involution. Fibrillar collagens, fibronectin, hyaluronan and matricellular proteins are matrix components that are common to both involution and cancer. Moreover, some of these proteins have in recent years been identified as important constituents of metastatic niches in breast cancer. In addition, specific ECM molecules, their receptors or enzymatic modifiers are significantly involved in resistance to therapeutic intervention. Further analysis of these ECM proteins and the downstream ECM mediated signaling pathways may provide a range of possibilities to identify druggable targets against advanced breast cancer. Copyright © 2013 Elsevier Ltd. All rights reserved.
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Ebel, J D; Leroux, S J; Robertson, M J; Dempson, J B
2016-11-01
Body-element content was measured for three life stages of wild Atlantic salmon Salmo salar from three distinct Newfoundland populations as individuals crossed between freshwater and marine ecosystems. Life stage explained most of the variation in observed body-element concentration whereas river of capture explained very little variation. Element composition of downstream migrating post-spawn adults (i.e. kelts) and juvenile smolts were similar and the composition of these two life stages strongly differed from adults migrating upstream to spawn. Low variation within life stages and across populations suggests that S. salar may exert rheostatic control of their body-element composition. Additionally, observed differences in trace element concentration between adults and other life stages were probably driven by the high carbon concentration in adults because abundant elements, such as carbon, can strongly influence the observed concentrations of less abundant elements. Thus, understanding variation among individuals in trace elements composition requires the measurement of more abundant elements. Changes in element concentration with ontogeny have important consequences the role of fishes in ecosystem nutrient cycling and should receive further attention. © 2016 The Fisheries Society of the British Isles.
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Chiral Antioxidant-based Gold Nanoclusters Reprogram DNA Epigenetic Patterns
Ma, Yue; Fu, Hualin; Zhang, Chunlei; Cheng, Shangli; Gao, Jie; Wang, Zhen; Jin, Weilin; Conde, João; Cui, Daxiang
2016-01-01
Epigenetic modifications sit ‘on top of’ the genome and influence DNA transcription, which can force a significant impact on cellular behavior and phenotype and, consequently human development and disease. Conventional methods for evaluating epigenetic modifications have inherent limitations and, hence, new methods based on nanoscale devices are needed. Here, we found that antioxidant (glutathione) chiral gold nanoclusters induce a decrease of 5-hydroxymethylcytosine (5hmC), which is an important epigenetic marker that associates with gene transcription regulation. This epigenetic change was triggered partially through ROS activation and oxidation generated by the treatment with glutathione chiral gold nanoclusters, which may inhibit the activity of TET proteins catalyzing the conversion of 5-methylcytosine (5mC) to 5hmC. In addition, these chiral gold nanoclusters can downregulate TET1 and TET2 mRNA expression. Alteration of TET-5hmC signaling will then affect several downstream targets and be involved in many aspects of cell behavior. We demonstrate for the first time that antioxidant-based chiral gold nanomaterials have a direct effect on epigenetic process of TET-5hmC pathways and reveal critical DNA demethylation patterns. PMID:27633378
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Kuo, Nae-Wen; Jien, Shih-Hao; Hong, Nien-Ming; Chen, Yao-Te; Lee, Tsung-Yu
2017-01-01
A previous study has demonstrated that Danshui River has almost the highest dissolved inorganic nitrogen (DIN) yield in the world and exports most of the DIN in the form of ammonium unlike the world's large rivers. However, the DIN sources are poorly constrained. In this study, the contributions of major sources in the Taipei metropolitan area to the DIN export in the Danshui River were investigated. It is observed that ammonium is the major DIN species in the downstream reaches, resulting from the ammonium-dominated inputs of the effluents of wastewater treatment plants (WWTP) and rain water pumping stations (RWPS). DIN concentrations in the downstream (urban) reaches are substantially elevated. The upstream tributaries annually discharge ∼2709 t DIN to the downstream reaches. However, the DIN discharge off the downstream reaches rises to ∼17,918 t, resulting from the contribution of RWPS-collected water, i.e., ∼14,632 t, and the effluents of two WWTP, i.e., ∼577 t. RWPS-collected water inherently contains the contribution of atmospheric deposition, ∼2937 t DIN. This finding implies that ∼11,695 t (∼66 % of the downstream output) DIN flux off the Danshui River is from urban runoff and can be attributed to human activities in the Taipei metropolitan area. To improve the water quality in the Danshui River, water quality controls in urban runoff are important.
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NASA Astrophysics Data System (ADS)
Bonnema, M.; Sikder, M. S.; Hossain, F.; Chen, X.; Miao, Y.; Lee, H.
2015-12-01
Growing population and increased demand for water in developing nations is causing an increase in dam construction in these regions. Entities and stakeholders downstream of dams experience drastically altered river flows. When rivers cross international boundaries, these downstream stakeholders often have little knowledge of upstream reservoir operation practices. Satellite remote sensing in the form of radar altimetry and multi-sensor precipitation products can be used as a way to provide downstream stakeholders with the upstream information needed to make important water management decisions. This study uses a mass balance between three hydraulic controls, precipitation induced inflow, evaporation, and reservoir storage change, to estimate reservoir outflow at a monthly time scale. Two reservoirs were examined in differing regions of the world, the Hungry Horse Reservoir in a mountainous region in northwest U.S. and the Kaptai Reservoir in a low-lying, forested region of Bangladesh. It was found that this mass balance method estimated the outflow of Kaptai Reservoir with reasonable skill when compared with observed flows. The estimation of outflow from Hungry Horse Reservoir was similarly skillful for outflows in winter and fall months, but summer and spring outflow estimates had high errors due to snowmelt effects. Furthermore, it was found that the important hydrologic controls for reservoir outflow estimation at the monthly time scale differs between the two reservoirs, with precipitation induced inflow being the most important control for the Kaptai Reservoir and storage change being the most important for Hungry Horse Reservoir. In both cases, a standard energy balance approach of evaporation estimation appeared to have little effect on the accuracy of outflow estimation.
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River pollution remediation monitored by optical and infrared high-resolution satellite images.
Trivero, Paolo; Borasi, Maria; Biamino, Walter; Cavagnero, Marco; Rinaudo, Caterina; Bonansea, Matias; Lanfri, Sofia
2013-09-01
The Bormida River Basin, located in the northwestern region of Italy, has been strongly contaminated by the ACNA chemical factory. This factory was in operation from 1892 to 1998, and contamination from the factory has had deleterious consequences on the water quality, agriculture, natural ecosystems and human health. Attempts have been made to remediate the site. The aims of this study were to use high-resolution satellite images combined with a classical remote sensing methodology to monitor vegetation conditions along the Bormida River, both upstream and downstream of the ACNA chemical factory site, and to compare the results obtained at different times before and after the remediation process. The trends of the Normalised Difference Vegetation Index (NDVI) and the Enhanced Vegetation Index (EVI) along the riverbanks are used to assess the effect of water pollution on vegetation. NDVI and EVI values show that the contamination produced by the ACNA factory had less severe effects in the year 2007, when most of the remediation activities were concluded, than in 2006 and 2003. In 2007, the contamination effects were noticeable up to 6 km downstream of the factory, whereas in 2003 and 2006 the influence range was up to about 12 km downstream of the factory. The results of this study show the effectiveness of remediation activities that have been taking place in this area. In addition, the comparison between NDVI and EVI shows that the EVI is more suitable to characterise the vegetation health and can be considered an additional tool to assess vegetation health and to monitor restoration activities.
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Zhang, Jun; Li, Jing; Craig, Theodore A; Kumar, Rajiv; Gross, Michael L
2017-07-18
Downstream regulatory element antagonist modulator (DREAM) is an EF-hand Ca 2+ -binding protein that also binds to a specific DNA sequence, downstream regulatory elements (DRE), and thereby regulates transcription in a calcium-dependent fashion. DREAM binds to DRE in the absence of Ca 2+ but detaches from DRE under Ca 2+ stimulation, allowing gene expression. The Ca 2+ binding properties of DREAM and the consequences of the binding on protein structure are key to understanding the function of DREAM. Here we describe the application of hydrogen-deuterium exchange mass spectrometry (HDX-MS) and site-directed mutagenesis to investigate the Ca 2+ binding properties and the subsequent conformational changes of full-length DREAM. We demonstrate that all EF-hands undergo large conformation changes upon calcium binding even though the EF-1 hand is not capable of binding to Ca 2+ . Moreover, EF-2 is a lower-affinity site compared to EF-3 and -4 hands. Comparison of HDX profiles between wild-type DREAM and two EF-1 mutated constructs illustrates that the conformational changes in the EF-1 hand are induced by long-range structural interactions. HDX analyses also reveal a conformational change in an N-terminal leucine-charged residue-rich domain (LCD) remote from Ca 2+ -binding EF-hands. This LCD domain is responsible for the direct interaction between DREAM and cAMP response element-binding protein (CREB) and regulates the recruitment of the co-activator, CREB-binding protein. These long-range interactions strongly suggest how conformational changes transmit the Ca 2+ signal to CREB-mediated gene transcription.
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NASA Astrophysics Data System (ADS)
Espa, Paolo; Castelli, Elena; Crosa, Giuseppe; Gentili, Gaetano
2013-07-01
Sediment flushing may be effective in mitigating loss of reservoir storage due to siltation, but flushing must be controlled to limit the impact on the downstream environment. A reliable prediction of the environmental effects of sediment flushing is hindered by the limited scientific information currently available. Consequently, there may be some controversy as regards to management decisions, planning the work, and monitoring strategies. This paper summarizes the main results of a monitoring campaign on the stream below a small alpine hydropower reservoir subjected to annual flushing between 2006 and 2009. The removed sediment was essentially silt, and the suspended solid concentration (SSC) of the discharged water was controlled to alleviate downstream impact. Control was achieved through hydraulic regulation and mechanical digging, alternating daytime sediment evacuation, and nocturnal clear water release. The four operations lasted about two weeks each and had an average SSC of about 4 g L-1. Maximum values of SSC were generally kept below 10 g L-1. Downstream impact was quantified through sampling of fish fauna (brown trout) and macroinvertebrate in the final reach of the effluent stream. The benthic community was severely impaired by the flushing operations, but recovered to pre-flushing values in a few months. As expected, the impact on brown trout was heavier on juveniles. While data biasing due to fish removal and re-stocking cannot be ruled out, the fish community seems to have reached a state of equilibrium characterized by a lower density than was measured before the flushing operations.
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Espa, Paolo; Castelli, Elena; Crosa, Giuseppe; Gentili, Gaetano
2013-07-01
Sediment flushing may be effective in mitigating loss of reservoir storage due to siltation, but flushing must be controlled to limit the impact on the downstream environment. A reliable prediction of the environmental effects of sediment flushing is hindered by the limited scientific information currently available. Consequently, there may be some controversy as regards to management decisions, planning the work, and monitoring strategies. This paper summarizes the main results of a monitoring campaign on the stream below a small alpine hydropower reservoir subjected to annual flushing between 2006 and 2009. The removed sediment was essentially silt, and the suspended solid concentration (SSC) of the discharged water was controlled to alleviate downstream impact. Control was achieved through hydraulic regulation and mechanical digging, alternating daytime sediment evacuation, and nocturnal clear water release. The four operations lasted about two weeks each and had an average SSC of about 4 g L(-1). Maximum values of SSC were generally kept below 10 g L(-1). Downstream impact was quantified through sampling of fish fauna (brown trout) and macroinvertebrate in the final reach of the effluent stream. The benthic community was severely impaired by the flushing operations, but recovered to pre-flushing values in a few months. As expected, the impact on brown trout was heavier on juveniles. While data biasing due to fish removal and re-stocking cannot be ruled out, the fish community seems to have reached a state of equilibrium characterized by a lower density than was measured before the flushing operations.
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Water balance in irrigation districts. Uncertainty in on-demand pressurized networks
NASA Astrophysics Data System (ADS)
Sánchez-Calvo, Raúl; Rodríguez-Sinobas, Leonor; Juana, Luis; Laguna, Francisco Vicente
2015-04-01
In on-demand pressurized irrigation distribution networks, applied water volume is usually controlled opening a valve during a calculated time interval, and assuming constant flow rate. In general, pressure regulating devices for controlling the discharged flow rate by irrigation units are needed due to the variability of pressure conditions. A pressure regulating valve PRV is the commonly used pressure regulating device in a hydrant, which, also, executes the open and close function. A hydrant feeds several irrigation units, requiring a wide range in flow rate. In addition, some flow meters are also available, one as a component of the hydrant and the rest are placed downstream. Every land owner has one flow meter for each group of field plots downstream the hydrant. Ideal PRV performance would maintain a constant downstream pressure. However, the true performance depends on both upstream pressure and the discharged flow rate. Theoretical flow rates values have been introduced into a PRV behavioral model, validated in laboratory, coupled with an on-demand irrigation district waterworks, composed by a distribution network and a multi-pump station. Variations on flow rate are simulated by taking into account the consequences of variations on climate conditions and also decisions in irrigation operation, such us duration and frequency application. The model comprises continuity, dynamic and energy equations of the components of both the PRV and the water distribution network. In this work the estimation of water balance terms during the irrigation events in an irrigation campaign has been simulated. The effect of demand concentration peaks has been estimated.
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NASA Astrophysics Data System (ADS)
Kondolf, G. M.; Oreilly, C.
2010-12-01
Water-supply reservoirs in the actively eroding California Coast Ranges are vulnerable to sediment filling, thus creating obsolete impounding dams (Minear & Kondolf 2009). Once full of sediment, there is more impetus to remove dams for public safety and fish passage, but managing accumulated sediments becomes a dominant issue in dam removal planning. We analyzed the planning process and sediment management analyses for five dams, all of which have important ecological resources but whose dam removal options are constrained by potential impacts to downstream urban populations. Ringe Dam on Malibu Ck, Matilija Dam on the Ventura River, Searsville Dam on San Francisquito Ck, and Upper York Creek Dam on York Ck cut off important habitat for anadromous steelhead trout (Oncorhynchus mykiss). San Clemente Dam on the Carmel River has a working fish ladder, but only some of the migratory steelhead use it. By virtue of having filled with sediment, all five dams are at greater risk of seismic failure. San Clemente Dam is at greater risk because its foundation is on alluvium (not bedrock), and the poor-quality concrete in Matilija Dam is deteriorating from an akali-aggregate reaction. Simply removing the dams and allowing accumulated sediments to be transported downstream is not an option because all these rivers have extremely expensive houses along downstream banks and floodplains, so that allowing the downstream channel to aggrade with dam-dervied sediments could expose agencies to liability for future flood losses. Analyses of potential sediment transport have been based mostly on application of tractive force models, and have supported management responses ranging from in-situ stabilization (San Clemente and Matilija) to removal of stored sediment (York) to annual dredging to maintain capacity and prevent sediment passing over the dam (proposed for Searsville).
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Desmet, N; Touchant, K; Seuntjens, P; Tang, T; Bronders, J
2016-12-15
Large river catchments with mixed land use capture pesticides from many sources, and degradable pesticides are converted during downstream transport. Unravelling the contribution of pesticide source and the effect of degradation processes is a challenge in such areas. However, insight and understanding of the sources is important for targeted management, especially when water is abstracted from the river for drinking water production. The river Meuse is such a case. A long-term monitoring data set was applied in a modelling approach for assessing the contribution of waste water treatment plants (WWTPs) and tributaries (sub-basins) to surface water contamination, and to evaluate the effect of decay on the downstream concentrations of glyphosate and AMPA at the point of drinking water abstraction. The results show that WWTPs are important contributors for glyphosate and AMPA in large river catchments with mixed land uses. In the studied area, the river Meuse in the Netherlands, the relative contribution of WWTP effluents is above 29% for glyphosate and around 12% for AMPA. Local industries are found to be potentially big contributors of AMPA. Glyphosate entering the river system is gradually converted to AMPA and other degradation productions, which results in downstream loads that are considerably lower than the sum of all influxes. In summer when the travel time is longer due to lower discharge, the first order decay of glyphosate in the river Meuse is estimated to result in about 50% reduction of the downstream glyphosate concentrations over a river stretch of 250km. The contribution of glyphosate decay to the observed AMPA concentrations ranges between 2% and 10%. Contributions are sensitive to seasonal variations in discharge that influence the concentrations through dilution and degradation. Copyright © 2016 Elsevier B.V. All rights reserved.
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Diet of first-feeding larval and young-of-the-year white sturgeon in the lower Columbia River
Muir, W.D.; McCabe, G.T.; Parsley, M.J.; Hinton, S.A.
2000-01-01
In some Snake and Columbia River reservoirs, adult white sturgeon (Acipenser transmontanus) are common but few juvenile fish are found, indicating a lack of spawning success or poor survival of larvae. In contrast, recruitment of young-of-the-year white sturgeon to juvenile and adult stages is successful in the unimpounded Columbia River downstream of Bonneville Dam. The availability and size of preferred prey during the period when white sturgeon larvae begin exogenous feeding could be an important determinant of year-class strength. To explore this issue, we examined the diet composition of 352 larval and young-of-the year white sturgeon collected from 1989 through 1991 in the lower Columbia River. Samples were collected downstream from Bonneville Dam and upstream from the dam in Bonneville and The Dalles Reservoirs. Fish that ranged in size from 15 to 290 mm in total length fed primarily on gammarid amphipods (Corophium spp.) during all months. This diet item became increasingly important to all sizes of white sturgeon examined as they grew. The length of Corophium spp. eaten by larval and young-of-the-year white sturgeon increased with increasing fish length (r2 = 45.6%, P < 0.0001). Copepods (Cyclopoida), Ceratopogonidae larvae, and Diptera pupae and larvae (primarily chironomids) were also consumed, especially at the onset of exogenous feeding. A small percentage of white sturgeon were found with empty stomachs during June (1.6% downstream from Bonneville Dam) and July (4.5% downstream and 2.6% in the reservoirs). Diets of larval and young-of-the year white sturgeon from both impounded and free-flowing sections of the Columbia River were similar and we found no evidence of larval starvation in the areas investigated, areas currently supporting healthy white sturgeon populations.
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NASA Astrophysics Data System (ADS)
Sullivan, P.; Sveinbjornsson, B.
2008-12-01
Treeline positions have important implications for surface energy budgets and carbon cycling in high latitude environments. Warming temperatures during the 20th century have been associated with both positive and negative growth trends in treeline white spruce. It has been suggested that negative growth trends may reflect the increasing importance of drought stress as a constraint on tree growth, although direct observations of water stress near the treeline are lacking. We set out to develop a more mechanistic understanding of environmental controls on gas exchange physiology and growth of white spruce near the Arctic treeline in Alaska. Our three-year study was carried out on a riverside terrace along the Agashashok River in Noatak National Preserve. The terrace is capped with a layer of sand/silt that grades from 10 cm depth at the upstream end to 45 cm depth at the downstream end. White spruce of similar size occur along the gradient at similar density, providing an opportunity to examine the role of parent material depth as a control on tree physiology and growth. Air temperatures during the 2006 growing season were near normal, there was no evidence of water stress and white spruce branch extension growth was near the long-term average. The 2007 growing season was exceptionally warm and dry. Stomatal closure was observed during mid-July throughout most of the diurnal cycle in trees growing on less than 30 cm of parent material. The warm, dry conditions and water-stress in the trees may have precipitated a major insect outbreak, which affected nearly all mature trees in the landscape. Branch extension growth in 2007 was reduced to 70 percent of that observed during the 2005 and 2006 growing seasons. Air temperatures during the 2008 growing season returned to near normal. There was no evidence of water stress, but the insect outbreak persisted and branch extension growth did not recover, remaining similar to that observed in 2007. Results of our study highlight the importance of extreme events in shaping the complexity of tree-insect-environment relations at the Arctic treeline and offer an important caution to studies that correlate tree growth with climate. Unfavorable climate conditions in one year may have consequences that persist beyond the return to favorable conditions.
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NASA Astrophysics Data System (ADS)
Donovan, Mitchell; Miller, Andrew; Baker, Matthew; Gellis, Allen
2015-04-01
The perceived role of streambank erosion as a contributor to watershed sediment yield is an important driver of policy decisions for managing downstream impacts in the United States. In the Piedmont physiographic province of the eastern U.S. and in other regions of the south and midwest, the issue of 'legacy' sediment stored in stream valleys has long been recognized as a consequence of rapid deforestation and erosive agricultural practices following European settlement. Remobilization of stored floodplain sediment by bank erosion is frequently cited as a dominant component of watershed sediment budgets, with legacy sediment comprising the largest portion of this source. However there are few published studies documenting spatially extensive measurements of channel change throughout the drainage network on time scales of more than a few years. In this study we document 1) rates of sediment remobilization from Baltimore County floodplains by channel migration and bank erosion, 2) proportions of streambank sediment derived from legacy deposits, and 3) potential contribution of net streambank erosion and legacy sediments to downstream sediment yield within the Mid-Atlantic Piedmont. We measured gross erosion and channel deposition rates over 45 years within the fluvial corridor along 40 valley segments from 18 watersheds with drainage areas between 0.18 and 155 km2 by comparing stream channel and floodplain morphology from LiDAR-based digital elevation data collected in 2005 with channel positions recorded on 1:2400-scale topographic maps from 1959-1961. Results were extrapolated to estimate contributions to watershed sediment yield from 1005 km2 of northern Baltimore County. Results indicate that legacy sediment is a dominant component (62%) of the sediment derived from bank erosion and that its relative importance is greater in larger valleys with broader valley floors and lower gradients. Although mass of sediment remobilized per unit channel length is greater in these downstream valleys, a majority of remobilized sediment (62%) is coming from first- and second-order tributaries because they represent the largest fraction of cumulative channel length in the drainage network. Floodplain segments are discontinuous along low-order tributaries but sediment contributions reported here are adjusted to account for the percent valley length bordered by floodplain sediments. Average annual lateral migration rates ranged from 0.04-0.19 m/y with higher rates along larger streams; however, when scaled by channel width, we find that on average streams are migrating 2.5% of channel width across all drainage areas. Direct measurements reported here account for in-channel deposition, but not floodplain deposition. Other studies in the region have demonstrated that redeposition on floodplains is an important component of the sediment budget and are necessary to avoid overestimating streambank erosion contributions to watershed sediment yield. We therefore adjust our measured sediment contributions by estimating the mass of sediment redeposited on floodplains within our study area. With this adjustment, extrapolated net stream bank sediment yields (72 Mg/km2/yr) are equivalent to 70% of the estimated average Piedmont watershed yield (104 Mg/km2/yr) cited by previous authors. Furthermore, our results demonstrate that measurements over adequate spatial and temporal scales- rather than short-term, localized observations- are required to accurately capture and measure patterns of streambank erosion across the drainage network. It is important to note that upland erosion rates- not measured here- have been reported with equivalent and greater magnitude for forested and cropland areas within the Maryland Piedmont and therefore should not be assumed to contribute only 30% of the total.
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Gao, Hongjuan; Wu, Xiaorong; Fossett, Nancy
2013-01-01
A fundamental question in stem cell biology concerns the regulatory strategies that control the choice between multipotency and differentiation. Drosophila blood progenitors or prohemocytes exhibit key stem cell characteristics, including multipotency, quiescence, and niche dependence. As a result, studies of Drosophila hematopoiesis have provided important insights into the molecular mechanisms that control these processes. Here, we show that E-cadherin is an important regulator of prohemocyte fate choice, maintaining prohemocyte multipotency and blocking differentiation. These functions are reminiscent of the role of E-cadherin in mammalian embryonic stem cells. We also show that mis-expression of E-cadherin in differentiating hemocytes disrupts the boundary between these cells and undifferentiated prohemocytes. Additionally, upregulation of E-cadherin in differentiating hemocytes increases the number of intermediate cell types expressing the prohemocyte marker, Patched. Furthermore, our studies indicate that the Drosophila GATA transcriptional co-factor, U-shaped, is required for E-cadherin expression. Consequently, E-cadherin is a downstream target of U-shaped in the maintenance of prohemocyte multipotency. In contrast, we showed that forced expression of the U-shaped GATA-binding partner, Serpent, repressed E-cadherin expression and promoted lamellocyte differentiation. Thus, U-shaped may maintain E-cadherin expression by blocking the inhibitory activity of Serpent. Collectively, these observations suggest that GATA:FOG complex formation regulates E-cadherin levels and, thereby, the choice between multipotency and differentiation. The work presented in this report further defines the molecular basis of prohemocyte cell fate choice, which will provide important insights into the mechanisms that govern stem cell biology. PMID:24040319
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NASA Astrophysics Data System (ADS)
Chícharo, M. Alexandra; Chícharo, Luis; Morais, Pedro
2006-10-01
The objective of this study was to evaluate how inter-annual changes in the volume of freshwater input and water parameters (salinity, temperature, major dissolved nutrients, seston and chlorophyll a) affect fish assemblages in the Guadiana estuary (South Portugal). During the sampling period (two distinct hydrological years), 56 fish species were identified. Anchovies ( Engraulis encrasicolus) and barbells ( Barbus species) dominated the abundances in the high inflow year (2001), but Pomatoschistus species were the most important taxa in the low inflow year (2002). Barbells and Portuguese toadfish ( Halobatrachus didactylus) dominated the biomass in both years under different inflow conditions, but a reduction in barbells' biomass occurred during the low inflow year. Multivariate analysis indicated a persistent spatial structuring of the estuarine community for both years and in different seasonal periods. Changes in salinity and seston, which were mainly due to changes in freshwater input, had an important influence on the structure of the fish assemblages. In 2002, the increased salinity in the upper estuary allowed colonization by marine species of an area that usually contains freshwater, decreasing even more the habitat for indigenous freshwater species in the downstream area of the Guadiana River. There was also a decrease in the abundances of planktivorous and omnivorous fishes and an increase in carnivorous fishes during the low inflow year. As fishes in these systems are important regulators of processes in the trophic web, changes in the dominant feeding groups can have consequences on water quality, particularly in relation to the occurrence of plankton blooms.
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He, Yuehui; Gan, Susheng
2004-01-01
Seed dormancy is an important developmental process that prevents pre-harvest sprouting in many grains and other seeds. Abscisic acid (ABA), a plant hormone, plays a crucial role in regulating dormancy but the underlying molecular regulatory mechanisms are not fully understood. An Arabidopsis zinc-finger gene, MEDIATOR OF ABA-REGULATED DORMANCY 1 ( MARD1 ) was identified and functionally analyzed. MARD1 expression is up-regulated by ABA. A T-DNA insertion in the promoter region downstream of two ABA-responsive elements (ABREs) renders MARD1 unable to respond to ABA. The mard1 seeds are less dormant and germinate in total darkness; their germination is resistant to external ABA at the stage of radicle protrusion. These results suggest that this novel zinc-finger protein with a proline-rich N-terminus is an important downstream component of the ABA signaling pathway that mediates ABA-regulated seed dormancy in Arabidopsis.
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Engel, Dominique; Seutin, Vincent
2015-11-15
The hyperpolarization-activated cation current Ih is expressed in dopamine neurons of the substantia nigra, but the subcellular distribution of the current and its role in synaptic integration remain unknown. We used cell-attached patch recordings to determine the localization profile of Ih along the somatodendritic axis of nigral dopamine neurons in slices from young rats. Ih density is higher in axon-bearing dendrites, in a membrane area close to the axon origin, than in the soma and axon-lacking dendrites. Dual current-clamp recordings revealed a similar contribution of Ih to the waveform of single excitatory postsynaptic potentials throughout the somatodendritic domain. The Ih blocker ZD 7288 increased the temporal summation in all dendrites with a comparable effect in axon- and non-axon dendrites. The strategic position of Ih in the proximity of the axon may influence importantly transitions between pacemaker and bursting activities and consequently the downstream release of dopamine. Dendrites of most neurons express voltage-gated ion channels in their membrane. In combination with passive properties, active currents confer to dendrites a high computational potential. The hyperpolarization-activated cation current Ih present in the dendrites of some pyramidal neurons affects their membrane and integration properties, synaptic plasticity and higher functions such as memory. A gradient of increasing h-channel density towards distal dendrites has been found to be responsible for the location independence of excitatory postsynaptic potential (EPSP) waveform and temporal summation in cortical and hippocampal pyramidal cells. However, reports on other cell types revealed that smoother gradients or even linear distributions of Ih can achieve homogeneous temporal summation. Although the existence of a robust, slowly activating Ih current has been repeatedly demonstrated in nigral dopamine neurons, its subcellular distribution and precise role in synaptic integration are unknown. Using cell-attached patch-clamp recordings, we find a higher Ih current density in the axon-bearing dendrite than in the soma or in dendrites without axon in nigral dopamine neurons. Ih is mainly concentrated in the dendritic membrane area surrounding the axon origin and decreases with increasing distances from this site. Single EPSPs and temporal summation are similarly affected by blockade of Ih in axon- and non-axon-bearing dendrites. The presence of Ih close to the axon is pivotal to control the integrative functions and the output signal of dopamine neurons and may consequently influence the downstream coding of movement. © 2015 The Authors. The Journal of Physiology © 2015 The Physiological Society.
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NASA Astrophysics Data System (ADS)
Al-Zaidi, B. M.; Moussa, A.; Viparelli, E.
2017-12-01
The construction of the High and Old Aswan Dams and of barrages significantly altered the flow and the sediment transport regimes in the Egyptian reach of the Nile River. The field data collected by the Nile Research Institute show that the post-High Aswan Dam Nile River hydrology is characterized by reductions of more than 70% in flow discharge and 98% in sediment load compared to pre-High Aswan Dam conditions. A significant portion of discharge released from the dams is diverted at the barrages for agricultural ( 80%) and municipal ( 15%) uses. Thus, virtually no water is reaching the Nile Delta and the Mediterranean Sea. Consequently, the sediment load delivered to the Mediterranean Sea is negligible compared to pre-dam conditions. Consequences of the flow regulation are delta wide wetland loss and shoreline retreat, widespread delta pollution, reduction soil quality, salination of cultivated land, wetland losses, and saltwater intrusion in the groundwater. Here we present the second part of a feasibility study for the restoration of the Nile River-Delta system characterized by controlled flow releases and sediment augmentations downstream of the High Aswan Dam. The controlled flow releases are obtained by regulating the current releases from the High Aswan Dam at the Old Aswan Dam, which is located 6.5 km downstream of the High Aswan Dam. Previous studies showed that 10 billion m3 of water can be saved annually by improving the Egyptian irrigation system. Here we propose to use the saved water to increase the water discharge to the Nile Delta, i.e., the total volume of water released from the dams does not change, what changes is the water used and the imposed hydrograph. We modulate the river flow by storing the saved water during the agriculture season upstream of the Old Aswan Dam and releasing it in the months coinciding with the natural river flood season. It is important to note that here we are considering the simplest possible scenario for water storage. In reality, additional storage volumes are available upstream of the major barrages, and these volumes can also be used during the proposed restoration project. The study consists in the implementation and validation of a laterally averaged delta growth model to quantify the impact of the proposed restoration project on the Nile Delta in terms of changes in shoreline position and channel-floodplain characteristics under the predicted rates of sea level rise.
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Ecoregion and land-use influence invertebrate and detritus transport from headwater streams
Binckley, Christopher A.; Wipfli, Mark S.; Medhurst, R. Bruce; Polivka, Karl; Hessburg, Paul F.; Salter, R. Brion; Kill, Joshua Y.
2010-01-01
4. Understanding the quantity and variation of headwater subsidies across climate and disturbance gradients is needed to appreciate the significance of ecological linkages between headwaters and associated downstream habitats. This will enable the accurate assessment of resource management impacts on stream ecosystems. Predicting the consequences of natural and anthropogenic disturbances on headwater stream transport rates will require knowledge of how both local and regional factors influence these potential subsidies. Our results suggest that resources transported from headwater streams reflect both the meso-scale land-use surrounding these areas and the constraints imposed by the ecoregion in which they are embedded.
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On the costs of self-interested economic behavior: how does stinginess get under the skin?
Dunn, Elizabeth W; Ashton-James, Claire E; Hanson, Margaret D; Aknin, Lara B
2010-05-01
The present study examined how financial decisions 'get under the skin'. Participants played an economic game in which they could donate some of their payment to another student. Affect was measured afterward and salivary cortisol was measured before and afterward. Participants who kept more money for themselves reported less positive affect, more negative affect, and more shame. Shame predicted higher levels of post-game cortisol, controlling for pre-game cortisol; stingy economic behavior therefore produced a significant indirect effect on cortisol via shame. Thus, shame and cortisol represent plausible emotional and biological pathways linking everyday decisions with downstream consequences for health.
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The Biogeohydroclimatology of Land Use
NASA Astrophysics Data System (ADS)
Jackson, R. B.
2008-05-01
When John Donne wrote his Meditation XVII, which includes the famous"No man is an island" passage, he was thinking about connections between people; no human being is isolated from another. Donne might just as well have been writing about the science of land use, however. What happens on one plot of land clearly affects what happens on another, whether downhill, downstream, or downwind. I will explore the consequences of land use for mass and energy fluxes, focusing on pasture, crop, and forest transitions in the Americas. I'll discuss my own work, some work of collaborators, and a few examples from the literature. No man is an island.
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Macleod, Kay F.
2010-01-01
Exposure to pro-oxidants and defects in the repair of oxidative base damage are associated with disease and ageing and also contribute to the development of anaemia, bone marrow failure and haematopoietic malignancies. This Review assesses emerging data indicative of a specific role for the RB tumour suppressor pathway in the response of the haematopoietic system to oxidative stress. This is mediated through signalling pathways that involve DNA damage sensors, forkhead box O (Foxo) transcription factors and p38 mitogen-activated protein kinases and has downstream consequences for cell cycle progression, antioxidant capacity, mitochondrial mass and cellular metabolism. PMID:18800074
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Towards a complete map of the human long non-coding RNA transcriptome.
Uszczynska-Ratajczak, Barbara; Lagarde, Julien; Frankish, Adam; Guigó, Roderic; Johnson, Rory
2018-05-23
Gene maps, or annotations, enable us to navigate the functional landscape of our genome. They are a resource upon which virtually all studies depend, from single-gene to genome-wide scales and from basic molecular biology to medical genetics. Yet present-day annotations suffer from trade-offs between quality and size, with serious but often unappreciated consequences for downstream studies. This is particularly true for long non-coding RNAs (lncRNAs), which are poorly characterized compared to protein-coding genes. Long-read sequencing technologies promise to improve current annotations, paving the way towards a complete annotation of lncRNAs expressed throughout a human lifetime.
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Seasonal and spatial patterns of growth of rainbow trout in the Colorado River in Grand Canyon, AZ
Yard, Micheal D.; Korman, Josh; Walters, Carl J.; Kennedy, T.A.
2016-01-01
Rainbow trout (Oncorhynchus mykiss) have been purposely introduced in many regulated rivers, with inadvertent consequences on native fishes. We describe how trout growth rates and condition could be influencing trout population dynamics in a 130 km section of the Colorado River below Glen Canyon Dam based on a large-scale mark–recapture program where ∼8000 rainbow trout were recaptured over a 3-year period (2012–2014). There were strong temporal and spatial variations in growth in both length and weight as predicted from von Bertalanffy and bioenergetic models, respectively. There was more evidence for seasonal variation in the growth coefficient and annual variation in the asymptotic length. Bioenergetic models showed more variability for growth in weight across seasons and years than across reaches. These patterns were consistent with strong seasonal variation in invertebrate drift and effects of turbidity on foraging efficiency. Highest growth rates and relative condition occurred in downstream reaches with lower trout densities. Results indicate that reduction in rainbow trout abundance in Glen Canyon will likely increase trout size in the tailwater fishery and may reduce downstream dispersal into Grand Canyon.
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Field Effects of Buoyancy on Lean Premixed Turbulent Flames
NASA Technical Reports Server (NTRS)
Cheng, R. K.; Dimalanta, R.; Wernet, M. P.; Greenberg, P. S.
2001-01-01
Buoyancy affects the entire flowfield of steady turbulent flames and this aspect of flame buoyancy coupling is largely unexplored by experiments or by theory. Open flames and flames within large confinements are free to expand and interact with the surrounding environment. In addition to fluid and combustion conditions, their aerodynamic flowfields are determined by the flame brush orientation and geometry, wake of the stabilizer, enclosure size, and of course, the gravitational field. Because the flowfield consists mainly of cold reactants (mostly in the nearfield) and hot products (mostly in the farfield), buoyancy effects are manifested in the farfield region. In upward pointing flames, an obvious effect is a favorable axial pressure gradient that accelerates the products thereby increasing the axial aerodynamic stretch rate. Intrinsic to turbulent flows, changes in mean aerodynamic stretch also couple to the fluctuating pressure field. Consequently, buoyancy can influence the turbulence intensities upstream and downstream of the flame. Flame wrinkling process, and heat release rate are also directly affected. This backward coupling mechanism is the so-called elliptic problem. To resolve the field effects of buoyancy would require the solution of three-dimensional non-linear Navier Stokes equations with full specification of the upstream, wall and downstream boundary conditions.
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Directional mass transport in an atmospheric pressure surface barrier discharge.
Dickenson, A; Morabit, Y; Hasan, M I; Walsh, J L
2017-10-25
In an atmospheric pressure surface barrier discharge the inherent physical separation between the plasma generation region and downstream point of application reduces the flux of reactive chemical species reaching the sample, potentially limiting application efficacy. This contribution explores the impact of manipulating the phase angle of the applied voltage to exert a level of control over the electrohydrodynamic forces generated by the plasma. As these forces produce a convective flow which is the primary mechanism of species transport, the technique facilitates the targeted delivery of reactive species to a downstream point without compromising the underpinning species generation mechanisms. Particle Imaging Velocimetry measurements are used to demonstrate that a phase shift between sinusoidal voltages applied to adjacent electrodes in a surface barrier discharge results in a significant deviation in the direction of the plasma induced gas flow. Using a two-dimensional numerical air plasma model, it is shown that the phase shift impacts the spatial distribution of the deposited charge on the dielectric surface between the adjacent electrodes. The modified surface charge distribution reduces the propagation length of the discharge ignited on the lagging electrode, causing an imbalance in the generated forces and consequently a variation in the direction of the resulting gas flow.
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Isolation and Purification of Biotechnological Products
NASA Astrophysics Data System (ADS)
Hubbuch, Jürgen; Kula, Maria-Regina
2007-05-01
The production of modern pharma proteins is one of the most rapid growing fields in biotechnology. The overall development and production is a complex task ranging from strain development and cultivation to the purification and formulation of the drug. Downstream processing, however, still accounts for the major part of production costs. This is mainly due to the high demands on purity and thus safety of the final product and results in processes with a sequence of typically more than 10 unit operations. Consequently, even if each process step would operate at near optimal yield, a very significant amount of product would be lost. The majority of unit operations applied in downstream processing have a long history in the field of chemical and process engineering; nevertheless, mathematical descriptions of the respective processes and the economical large-scale production of modern pharmaceutical products are hampered by the complexity of the biological feedstock, especially the high molecular weight and limited stability of proteins. In order to develop new operational steps as well as a successful overall process, it is thus a necessary prerequisite to develop a deeper understanding of the thermodynamics and physics behind the applied processes as well as the implications for the product.
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Application of a multistate model to estimate culvert effects on movement of small fishes
Norman, J.R.; Hagler, M.M.; Freeman, Mary C.; Freeman, B.J.
2009-01-01
While it is widely acknowledged that culverted road-stream crossings may impede fish passage, effects of culverts on movement of nongame and small-bodied fishes have not been extensively studied and studies generally have not accounted for spatial variation in capture probabilities. We estimated probabilities for upstream and downstream movement of small (30-120 mm standard length) benthic and water column fishes across stream reaches with and without culverts at four road-stream crossings over a 4-6-week period. Movement and reach-specific capture probabilities were estimated using multistate capture-recapture models. Although none of the culverts were complete barriers to passage, only a bottomless-box culvert appeared to permit unrestricted upstream and downstream movements by benthic fishes based on model estimates of movement probabilities. At two box culverts that were perched above the water surface at base flow, observed movements were limited to water column fishes and to intervals when runoff from storm events raised water levels above the perched level. Only a single fish was observed to move through a partially embedded pipe culvert. Estimates for probabilities of movement over distances equal to at least the length of one culvert were low (e.g., generally ???0.03, estimated for 1-2-week intervals) and had wide 95% confidence intervals as a consequence of few observed movements to nonadjacent reaches. Estimates of capture probabilities varied among reaches by a factor of 2 to over 10, illustrating the importance of accounting for spatially variable capture rates when estimating movement probabilities with capture-recapture data. Longer-term studies are needed to evaluate temporal variability in stream fish passage at culverts (e.g., in relation to streamflow variability) and to thereby better quantify the degree of population fragmentation caused by road-stream crossings with culverts. ?? American Fisheries Society 2009.
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Sampling methods for the study of pneumococcal carriage: a systematic review.
Gladstone, R A; Jefferies, J M; Faust, S N; Clarke, S C
2012-11-06
Streptococcus pneumoniae is an important pathogen worldwide. Accurate sampling of S. pneumoniae carriage is central to surveillance studies before and following conjugate vaccination programmes to combat pneumococcal disease. Any bias introduced during sampling will affect downstream recovery and typing. Many variables exist for the method of collection and initial processing, which can make inter-laboratory or international comparisons of data complex. In February 2003, a World Health Organisation working group published a standard method for the detection of pneumococcal carriage for vaccine trials to reduce or eliminate variability. We sought to describe the variables associated with the sampling of S. pneumoniae from collection to storage in the context of the methods recommended by the WHO and those used in pneumococcal carriage studies since its publication. A search of published literature in the online PubMed database was performed on the 1st June 2012, to identify published studies that collected pneumococcal carriage isolates, conducted after the publication of the WHO standard method. After undertaking a systematic analysis of the literature, we show that a number of differences in pneumococcal sampling protocol continue to exist between studies since the WHO publication. The majority of studies sample from the nasopharynx, but the choice of swab and swab transport media is more variable between studies. At present there is insufficient experimental data that supports the optimal sensitivity of any standard method. This may have contributed to incomplete adoption of the primary stages of the WHO detection protocol, alongside pragmatic or logistical issues associated with study design. Consequently studies may not provide a true estimate of pneumococcal carriage. Optimal sampling of carriage could lead to improvements in downstream analysis and the evaluation of pneumococcal vaccine impact and extrapolation to pneumococcal disease control therefore further in depth comparisons would be of value. Copyright © 2012 Elsevier Ltd. All rights reserved.
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Hitchman, Sean M.; Mather, Martha E.; Smith, Joseph M.; Fencl, Jane S.
2018-01-01
Conserving native biodiversity depends on restoring functional habitats in the face of human-induced disturbances. Low-head dams are a ubiquitous human impact that degrades aquatic ecosystems worldwide. To improve our understanding of how low-head dams impact habitat and associated biodiversity, our research examined complex interactions among three spheres of the total environment. i.e., how low-head dams (anthroposphere) affect aquatic habitat (hydrosphere), and native biodiversity (biosphere) in streams and rivers. Creation of lake-like habitats upstream of low-head dams is a well-documented major impact of dams. Alterations downstream of low head dams also have important consequences, but these downstream dam effects are more challenging to detect. In a multidisciplinary field study at five dammed and five undammed sites within the Neosho River basin, KS, we tested hypotheses about two types of habitat sampling (transect and mosaic) and two types of statistical analyses (analysis of covariance and path analysis). We used fish as our example of biodiversity alteration. Our research provided three insights that can aid environmental professionals who seek to conserve and restore fish biodiversity in aquatic ecosystems threatened by human modifications. First, a mosaic approach identified habitat alterations below low-head dams (e.g. increased proportion of riffles) that were not detected using the more commonly-used transect sampling approach. Second, the habitat mosaic approach illustrated how low-head dams reduced natural variation in stream habitat. Third, path analysis, a statistical approach that tests indirect effects, showed how dams, habitat, and fish biodiversity interact. Specifically, path analysis revealed that low-head dams increased the proportion of riffle habitat below dams, and, as a result, indirectly increased fish species richness. Furthermore, the pool habitat that was created above low-head dams dramatically decreased fish species richness. As we show here, mosaic habitat sampling and path analysis can help conservation practitioners improve science-based management plans for disturbed aquatic systems worldwide.
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NASA Astrophysics Data System (ADS)
Gilligan, J. M.; Corey, B.; Camp, J. V.; John, N. J.; Sengupta, P.
2015-12-01
The complex interactions between land use and natural hazards pose serious challenges in education, research, and public policy. Where complex nonlinear interactions produce unintuitive results, interactive computer simulations can be useful tools for education and decision support. Emotions play important roles in cognition and learning, especially where risks are concerned. Interactive simulations have the potential to harness emotional engagement to enhance learning and understanding of risks in coupled human-natural systems. We developed a participatory agent-based simulation of cities at risk of river flooding. Participants play the role of managers of neighboring cities along a flood-prone river and make choices about building flood walls to protect their inhabitants. Simulated agents participate in dynamic real estate markets in which demand for property, and thus values and decisions to build, respond to experience with flooding over time. By reducing high-frequency low-magnitude flooding, flood walls may stimulate development, thus increasing tax revenues but also increasing vulnerability to uncommon floods that overtop the walls. Flood waves are launched stochastically and propagate downstream. Flood walls that restrict overbank flow at one city can increase the amplitude of a flood wave at neighboring cities, both up and downstream. We conducted a pilot experiment with a group of three pre-service teachers. The subjects successfully learned key concepts of risk tradeoffs and unintended consequences that can accompany flood-control measures. We also observed strong emotional responses, including hope, fear, and sense of loss. This emotional engagement with a model of coupled human-natural systems was very different from previous experiments on participatory simulations of purely natural systems for physics pedagogy. We conducted a second session in which the participants were expert engineers. We will present the results of these experiments and the prospects for using such models for middle-school, high-school, and post-secondary environmental science pedagogy, for improving public understanding of flood risks, and as decision support tools for planners.
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Hitchman, Sean M; Mather, Martha E; Smith, Joseph M; Fencl, Jane S
2018-04-01
Conserving native biodiversity depends on restoring functional habitats in the face of human-induced disturbances. Low-head dams are a ubiquitous human impact that degrades aquatic ecosystems worldwide. To improve our understanding of how low-head dams impact habitat and associated biodiversity, our research examined complex interactions among three spheres of the total environment. i.e., how low-head dams (anthroposphere) affect aquatic habitat (hydrosphere), and native biodiversity (biosphere) in streams and rivers. Creation of lake-like habitats upstream of low-head dams is a well-documented major impact of dams. Alterations downstream of low head dams also have important consequences, but these downstream dam effects are more challenging to detect. In a multidisciplinary field study at five dammed and five undammed sites within the Neosho River basin, KS, we tested hypotheses about two types of habitat sampling (transect and mosaic) and two types of statistical analyses (analysis of covariance and path analysis). We used fish as our example of biodiversity alteration. Our research provided three insights that can aid environmental professionals who seek to conserve and restore fish biodiversity in aquatic ecosystems threatened by human modifications. First, a mosaic approach identified habitat alterations below low-head dams (e.g. increased proportion of riffles) that were not detected using the more commonly-used transect sampling approach. Second, the habitat mosaic approach illustrated how low-head dams reduced natural variation in stream habitat. Third, path analysis, a statistical approach that tests indirect effects, showed how dams, habitat, and fish biodiversity interact. Specifically, path analysis revealed that low-head dams increased the proportion of riffle habitat below dams, and, as a result, indirectly increased fish species richness. Furthermore, the pool habitat that was created above low-head dams dramatically decreased fish species richness. As we show here, mosaic habitat sampling and path analysis can help conservation practitioners improve science-based management plans for disturbed aquatic systems worldwide. Copyright © 2017 Elsevier B.V. All rights reserved.
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Sullivan, Annett B.; Rounds, Stewart A.; Deas, Michael L.; Asbill, Jessica R.; Wellman, Roy E.; Stewart, Marc A.; Johnston, Matthew W.; Sogutlugil, I. Ertugrul
2011-01-01
A hydrodynamic, water temperature, and water-quality model was constructed for a 20-mile reach of the Klamath River downstream of Upper Klamath Lake, from Link River to Keno Dam, for calendar years 2006-09. The two-dimensional, laterally averaged model CE-QUAL-W2 was used to simulate water velocity, ice cover, water temperature, specific conductance, dissolved and suspended solids, dissolved oxygen, total nitrogen, ammonia, nitrate, total phosphorus, orthophosphate, dissolved and particulate organic matter, and three algal groups. The Link-Keno model successfully simulated the most important spatial and temporal patterns in the measured data for this 4-year time period. The model calibration process provided critical insights into water-quality processes and the nature of those inputs and processes that drive water quality in this reach. The model was used not only to reproduce and better understand water-quality conditions that occurred in 2006-09, but also to test several load-reduction scenarios that have implications for future water-resources management in the river basin. The model construction and calibration process provided results concerning water quality and transport in the Link-Keno reach of the Klamath River, ranging from interesting circulation patterns in the Lake Ewauna area to the nature and importance of organic matter and algae. These insights and results include: * Modeled segment-average water velocities ranged from near 0.0 to 3.0 ft/s in 2006 through 2009. Travel time through the model reach was about 4 days at 2,000 ft3/s and 12 days at 700 ft3/s flow. Flow direction was aligned with the upstream-downstream channel axis for most of the Link-Keno reach, except for Lake Ewauna. Wind effects were pronounced at Lake Ewauna during low-flow conditions, often with circulation in the form of a gyre that rotated in a clockwise direction when winds were towards the southeast and in a counterclockwise direction when winds were towards the northwest. * Water temperatures ranged from near freezing in winter to near 30 degrees C at some locations and periods in summer; seasonal water temperature patterns were similar at the inflow and outflow. Although vertical temperature stratification was not present at most times and locations, weak stratification could persist for periods up to 1-2 weeks, especially in the downstream parts of the reach. Thermal stratification was important in controlling vertical variations in water quality. * The specific conductance, and thus density, of tributaries within the reach usually was higher than that of the river itself, so that inflows tended to sink below the river surface. This was especially notable for inflows from the Klamath Straits Drain, which tended to sink to the bottom of the Klamath River at its confluence and not mix vertically for several miles downstream. * The model was able to capture most of the seasonal changes in the algal population by modeling that population with three algal groups: blue-green algae, diatoms, and other algae. The blooms of blue-green algae, consisting mostly of Aphanizomenon flos aquae that entered from Upper Klamath Lake, were dominant, dwarfing the populations of the other two algae groups in summer. A large part of the blue-green algae population that entered this reach from upstream tended to settle out, die, and decompose, especially in the upper part of the Link-Keno reach. Diatoms reached a maximum in spring and other algae in midsummer. * Organic matter, occurring in both dissolved and particulate forms, was critical to the water quality of this reach of the Klamath River, and was strongly tied to nutrient and dissolved-oxygen dynamics. Dissolved and particulate organic matter were subdivided into labile (quickly decaying) and refractory (slowing decaying) groups for modeling purposes. The particulate matter in summer, consisting largely of dead blue-green algae, decayed quickly. Consequently, this particulate matt
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Migration and spawning of radio-tagged zulega Prochilodus argenteus in a dammed Brazilian river
Godinho, Alexandre L.; Kynard, B.
2006-01-01
It is difficult for agencies to evaluate the impacts of the many planned dams on Sa??o Francisco River, Brazil, migratory fishes because fish migrations are poorly known. We conducted a study on zulega Prochilodus argenteus, an important commercial and recreational fish in the Sa??o Francisco River, to identify migrations and spawning areas and to determine linear home range. During two spawning seasons (2001-2003), we radio-tagged fish in three main-stem reaches downstream of Tre??s Marias Dam (TMD), located at river kilometer (rkm) 2,109. We tagged 10 fish at Tre??s Marias (TM), which is 5 km downstream of TMD; 12 fish at Pontal, which is 28 km downstream of TMD and which includes the mouth of the Abaete?? River, and 10 fish at Cilga, which is 45 km downstream of TMD. Late-stage (ripe) adults tagged in each area during the spawning season remained at or near the tagging site, except for four Cilga fish that went to Pontal and probably spawned. The Pontal area at the Abaete?? River mouth was the most important spawning site we found. Prespawning fish moved back and forth between main-stem staging areas upstream of the Abaete?? River mouth and Pontal for short visits. These multiple visits were probably needed as ripe fish waited for spawning cues from a flooding Abaete?? River. Some fish homed to prespaw ning staging areas, spawning areas, and nonspawning areas. The migratory style of zulega was dualistic, with resident and migratory fish. Total linear home range was also dualistic, with small (<26-km) and large (53-127-km) ranges. The locations of spawning areas and home ranges suggest that the Pontal group (which includes Cilga fish) is one population that occupies about 110 km. The Pontal population overlaps a short distance with a population located downstream of Cilga. Movements of late-stage TM adults suggest that the TM group is a separate population, possibly with connections to populations upstream of TMD. ?? Copyright by the American Fisheries Society 2006.
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NASA Astrophysics Data System (ADS)
Gurer, M.; Sullivan, S.; Masteller, C.
2016-12-01
Bedload is a regime of sediment transport that occurs when particles roll, hop, or bounce downstream. This mode of transport represents an important portion of the sediment load in a gravel river. Despite numerous studies focused on bedload transport, it still remains difficult to predict accurately due to the complex arrangement of riverbed particles. The formation of gravel clusters, stones being imbricated, or streamlined, and other interlocked arrangements, as well as grains armoring the bed, all tend to stabilize gravel channels and decrease bed mobility. Typically, the development of bed structure usually occurs as sediment moves downstream. However, it is unclear that gravel bed structure can be developed during weaker flows that do not generate significant sediment transport. We examine how individual sediment grains reorient themselves during low flow conditions, in the absence of sediment transport, and during high flow conditions, as bedload transport occurs. We then perform flume experiments where we expose a gravel bed to varying durations of low flow and raise the water level, simulating a flood and transporting sediment. We also compare the long-axis orientations of grains before and after each low flow period and transport. We find that sediment grains reorient themselves differently during low and high flows. During low flow, grains appear to reorient themselves with the long-axes towards cross-stream direction, or perpendicular to the flow, with longer duration flows resulting in more pronounced cross-stream orientation. During high flow, grains orient themselves with their long-axes facing downstream or parallel to the flow, similar to imbricated grains observed in the sedimentary record. Further, when transport occurs, we find that median grain orientation is strongly correlated with bedload transport rates (R^2 = 0.98). We also observe that median grain orientations more perpendicular to downstream flow result in reduced transport rates. This new result suggests that the low flow reorientation of grains perpendicular to downstream flow drives observed differences in bedload transport during high flows. We conclude that low flow periods are important for the creation of bed structure and the stabilization of gravel river channels.
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Biodegradation of 17β-estradiol, estrone and testosterone in stream sediments
Bradley, Paul M.; Barber, Larry B.; Chapelle, Francis H.; Gray, James L.; Kolpin, Dana W.; McMahon, Peter B.
2009-01-01
Biodegradation of 17β-estradiol (E2), estrone (E1), and testosterone (T) was investigated in three wastewater treatment plant (WWTP) affected streams in the United States. Relative differences in the mineralization of [4-14C] substrates were assessed in oxic microcosms containing saturated sediment or water-only from locations upstream and downstream of the WWTP outfall in each system. Upstream sediment demonstrated significant mineralization of the “A” ring of E2, E1, and T, with biodegradation of T consistently greater than that of E2 and no systematic difference in E2 and E1 biodegradation. “A” ring mineralization also was observed in downstream sediment, with E1 and T mineralization being substantially depressed relative to upstream samples. In marked contrast, E2 mineralization in sediment immediately downstream from the WWTP outfalls was more than double that in upstream sediment. E2 mineralization was observed in water, albeit at insufficient rate to prevent substantial downstream transport. The results indicate that, in combination with sediment sorption processes which effectively scavenge hydrophobic contaminants from the water column and immobilize them in the vicinity of the WWTP outfall, aerobic biodegradation of reproductive hormones can be an environmentally important mechanism for nonconservative (destructive) attenuation of hormonal endocrine disruptors in effluent-affected streams.
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Chang, Victor W C; Hildemann, Lynn M; Chang, Cheng-hisn
2009-06-01
The particle and gaseous pollutants in vehicle exhaust emissions undergo rapid dilution with ambient air after exiting the tailpipe. The rate and extent of this dilution can greatly affect both the size evolution of primary exhaust particles and the potential for formation of ultrafine particles. Dilution ratios were measured inside of a wind tunnel in the region immediately downstream of the tailpipe using model vehicles (approximately one-fifth to one-seventh scale models) representing a light-duty truck, a passenger car, and a heavy-duty tractor head (without the trailer). A tracer gas (ethene) was released at a measured flow rate from the tailpipe, and 60 sampling probes placed downstream of the vehicle simultaneously sampled gas tracer concentrations in the near-wake (first few vehicle heights) and far-wake regions (beyond 10 vehicle heights). Tests using different tunnel wind speeds show the range of dilution ratios that can be expected as a function of vehicle type and downstream distance (i.e., time). The vehicle shape quite strongly influences dilution profiles in the near-wake region but is much less important in the far-wake region. The tractor generally produces higher dilution rates than the automobile and light-duty truck under comparable conditions.
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Functional analysis of the plant disease resistance gene Pto using DNA shuffling.
Bernal, Adriana J; Pan, Qilin; Pollack, Jeff; Rose, Laura; Kozik, Alexander; Willits, Neil; Luo, Yao; Guittet, Muriel; Kochetkova, Elena; Michelmore, Richard W
2005-06-17
Pto is a serine/threonine kinase that mediates resistance in tomato to strains of Pseudomonas syringae pv. tomato expressing the (a)virulence proteins AvrPto or AvrPtoB. DNA shuffling was used as a combinatorial in vitro genetic approach to dissect the functional regions of Pto. The Pto gene was shuffled with four of its paralogs from a resistant haplotype to create a library of recombinant products that was screened for interaction with AvrPto in yeast. All interacting clones and a representative sample of noninteracting clones were sequenced, and their ability to signal downstream was tested by the elicitation of a hypersensitive response in an AvrPto-dependent or -independent manner in planta. Eight candidate regions important for binding to AvrPto or for downstream signaling were identified by statistical correlations between individual amino acid positions and phenotype. A subset of the regions had previously been identified as important for recognition, confirming the validity of the shuffling approach. Three novel regions important for Pto function were validated by site-directed mutagenesis. Several chimeras and point mutants exhibited a differential interaction with (a)virulence proteins in the AvrPto and VirPphA family, demonstrating distinct binding requirements for different ligands. Additionally, the identification of chimeras that are both constitutively active as well as capable of binding AvrPto indicates that elicitation of downstream signaling does not involve a conformational change that precludes binding of AvrPto, as previously hypothesized. The correlations between phenotypes and variation generated by DNA shuffling paralleled natural variation observed between orthologs of Pto from Lycopersicon spp.
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Response of small glaciers to climate change: runoff from glaciers of the Wind River range, Wyoming
NASA Astrophysics Data System (ADS)
Bliss, A. K.; Stamper, B.
2017-12-01
Runoff from glaciers affects downstream ecosystems by influencing the quantity, seasonality, and chemistry of the water. We describe the present state of glaciers in the Wind River range, Wyoming and consider how these glaciers will change in the future. Wind River glaciers have been losing mass in recent decades, as seen with geodetic techniques and by examining glacier morphology. Interestingly, the 2016/7 winter featured one of the largest snowfalls on record. Our primary focus is the Dinwoody Glacier ( 3 km^2, 3300-4000 m above sea level). We present data collected in mid-August 2017 including glacier ablation rates, snow line elevations, and streamflow. We compare measured glacier mass loss to streamflow at the glacier terminus and at a USGS stream gauge farther downstream. Using a hydrological model, we explore the fate of glacial runoff as it moves into downstream ecosystems and through ranchlands important to local people. The techniques used here can be applied to similar small-glacier systems in other parts of the world.
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Modeling Total Dissolved Gas for Optimal Operation of Multireservoir Systems
Politano, Marcela; Castro, Alejandro; Hadjerioua, Boualem
2017-02-09
One important environmental issue of hydropower in the Columbia and Snake River Basins (Pacific Northwest region of United States) is elevated total dissolved gas (TDG) downstream of a dam, which has the potential to cause gas bubble disease in affected fish. Gas supersaturation in the Columbia River Basin primarily occurs due to dissolution of bubbles entrained during spill events. This paper presents a physically based TDG model that can be used to optimize spill operations in multireservoir hydropower systems. Independent variables of the model are forebay TDG, tailwater elevation, spillway and powerhouse discharges, project head, and environmental parameters such asmore » temperature and atmospheric pressure. The model contains seven physically meaningful experimental parameters, which were calibrated and validated against TDG data collected downstream of Rock Island Dam (Washington) from 2008 to 2012. In conclusion, a sensitivity analysis was performed to increase the understanding of the relationships between TDG downstream of the dam and processes such as air entrainment, lateral powerhouse flow, and dissolution.« less
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Chew, Randall T.
1955-01-01
Traverses along some streams of the Colorado Plateau in areas known to contain minable uranium deposits show that anomalous radiation in the stream gravels can be detected with a suitable counter downstream from the deposits. The amount of radiation is influenced by the size of the uranium deposit, the size of the drainage area of the stream, the grain size of the sediments, and the lithology of the rocks over which the stream flows. The spacing of the stations where readings are taken is controlled by the size of the stream, and special readings are also taken directly downstream from important tributaries. An anomaly is empirically defined as a 10 percent rise over background. Radioactive material from large uranium deposits has been detected as much as 1 mile downstream. Radioactive material from smaller deposits is detachable over shorter distances. The method is slow but appears to be a useful prospecting tool under restricted conditions.
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The Role of c-FLIP(L) in Regulating Apoptotic Pathways in Prostate Cancer
2006-12-01
which regulates gene expression 3. c-Fos has been shown to play an important role in development, inflammation and oncogenic processes. For example...important role in development, inflammation and oncogenic processes. For example, TNF-family induction of c-Fos plays an important role in proper bone c...identifying the down-stream targets of c-Fos has significant implications in understanding of normal development, inflammation and oncogenesis (10). In
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Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrolo...
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Murthi, Padma; Abumaree, Mohamed; Kalionis, Bill
2014-01-01
Homeobox genes are essential for both the development of the blood and lymphatic vascular systems, as well as for their maintenance in the adult. Homeobox genes comprise an important family of transcription factors, which are characterized by a well conserved DNA binding motif; the homeodomain. The specificity of the homeodomain allows the transcription factor to bind to the promoter regions of batteries of target genes and thereby regulates their expression. Target genes identified for homeodomain proteins have been shown to control fundamental cell processes such as proliferation, differentiation, and apoptosis. We and others have reported that homeobox genes are expressed in the placental vasculature, but our knowledge of their downstream target genes is limited. This review highlights the importance of studying the cellular and molecular mechanisms by which homeobox genes and their downstream targets may regulate important vascular cellular processes such as proliferation, migration, and endothelial tube formation, which are essential for placental vasculogenesis and angiogenesis. A better understanding of the molecular targets of homeobox genes may lead to new therapies for aberrant angiogenesis associated with clinically important pregnancy pathologies, including fetal growth restriction and preeclampsia. PMID:24926269
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NASA Astrophysics Data System (ADS)
Bergquist, B. A.; Adler Miserendino, R. A.; Guimarães, J. R.; Veiga, M.; Velasquez-López, P.; Lees, P. S.; Thibodeau, A. M.; Fernandez, L. E.
2013-12-01
In parts of the developing world, mercury (Hg) is used to extract gold by amalgamation during artisanal and small-scale gold mining (ASGM) and this can lead to contamination of downstream aquatic ecosystems. Differentiation between Hg from ASGM and from other sources of Hg, such as increased erosion from land cover and land use change (LCLUC), is challenging and has lead to heated debates over the dominant sources of elevated Hg in some ecosystems. Here, stable Hg isotopic analysis was applied in two aquatic ecosystems in South America: (1) the Amazonian aquatic ecosystem of Amapá, Brazil downstream of artisanal gold mining (AGM) and (2) the Puyango-Tumbes River ecosystem downstream of Portovelo-Zaruma, Ecuador, a large mining area where both AGM and small-scale gold mining (SGM) are in operation. The Hg isotopic analyses from Amapá, Brazil, do not support AGM as the source of elevated Hg in the downstream aquatic ecosystem. Instead, Hg isotopes are most consistent with the elevated Hg being from preferential migration of Hg from soil erosion, which is likely associated with land use change. Although soils are regarded as Hg sinks in the global Hg cycle, this work suggests that LCLUC can disrupt Hg stores with significant ecological consequences. In contrast in the Southwestern Andean region of Ecuador and Peru, analysis of Hg isotopes and other toxic metals (i.e., Pb, Zn, Cu), which are associated with the larger scale mining and cyanide used during SGM, demonstrate Hg used during gold mining is the predominant source of Hg downstream and can be traced far from the dominant mining area. Although it has been speculated that Hg from SGM in Ecuador was not that mobile or that Hg far downstream of SGM processing plants was from erosion due to LCLUC or from AGM taking place downstream, the isotopically heavy signature of Hg used during gold mining and elevated other metal concentrations were observed ~120 km downstream of Portovelo-Zaruma. Mercury isotopes appear able to differentiate mining Hg from the non-mining background, which includes runoff from soils and atmospheric deposition, but they cannot distinguish between Hg used during mining from different mining regions or Hg used during AGM versus SGM. Thus, other toxic metals were measured that are more likely to be associated with SGM as opposed to AGM. Together, these studies demonstrate that variations in stable Hg isotopes are a viable tool to differentiate between Hg sources. Although there are unconstrained or unknown aspects of the stable Hg isotope cycle, the isotopic differences between Hg used during ASGM and from background soil, sediment and atmospheric deposition are large enough not to be obscured by changes in isotopic distributions that may be induced as Hg is transported through the environment. This is likely because most of the Hg in the above aquatic ecosystems is bound to particles and colloids and transported such that most of the Hg does not undergo transformations that fractionate Hg isotopes. For example, in the Puyango-Tumbes River, greater than 95% of the Hg is transported in the particulate phase. Thus, in areas where Hg is transported primarily in the particulate or colloidal form, it can be traced if Hg sources are isotopically distinct. Additionally, the contrasting results in our two studies show that scale and processing differences between AGM and SGM influence the extent of Hg contamination.
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Qa'aty, Nour; Vincent, Matthew; Wang, Yanting; Wang, Andrew; Mitts, Thomas F; Hinek, Aleksander
2015-12-01
We have previously reported that a mixture of peptides obtained after chemical or enzymatic degradation of bovine elastin, induced new elastogenesis in human skin. Now, we investigated the elastogenic potential of synthetic peptides mimicking the elastin-derived, VGVAPG sequence, IGVAPG sequence that we found in the rice bran, and a similar peptide, VGVTAG that we identified in the IGF-1-binding protein-1 (IGFBP-1). We now demonstrate that treatment with each of these xGVxxG peptides (recognizable by the anti-elastin antibody), up-regulated the levels of elastin-encoding mRNA, tropoelastin protein, and the deposition of new elastic fibers in cultures of human dermal fibroblasts and in cultured explants of human skin. Importantly, we found that such induction of new elastogenesis may involve two parallel signaling pathways triggered after activation of IGF-1 receptor. In the first one, the xGVxxG peptides interact with the cell surface elastin receptor, thereby causing the downstream activation of the c-Src kinase and a consequent cross-activation of the adjacent IGF-1R, even in the absence of its principal ligand. In the second pathway their hydrophobic association with the N-terminal domain (VGVTAG) of the serum-derived IGFBP-1 induces conformational changes of this IGF-1 chaperone allowing for the release of its cargo and a consequent ligand-specific phosphorylation of IGF-1R. We present a novel, clinically relevant mechanism in which products of partial degradation of dermal elastin may stimulate production of new elastic fibers by dermal fibroblasts. Our findings particularly encourage the use of biologically safe synthetic xGVxxG peptides for regeneration of the injured or aged human skin. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.
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Smith, R E; Reyes, N J; Khandelwal, P; Schlereth, S L; Lee, H S; Masli, S; Saban, D R
2016-08-01
Allergic eye disease, as in most forms of atopy, ranges in severity among individuals from immediate hypersensitivity to a severe and debilitating chronic disease. Dendritic cells play a key role in stimulating pathogenic T cells in allergen re-exposure, or secondary responses. However, molecular cues by dendritic cells underpinning allergic T cell response levels and the impact that this control has on consequent severity of allergic disease are poorly understood. Here, we show that a deficiency in thrombospondin-1, a matricellular protein known to affect immune function, has subsequent effects on downstream T cell responses during allergy, as revealed in an established mouse model of allergic eye disease. More specifically, we demonstrate that a thrombospondin-1 deficiency specific to dendritic cells leads to heightened secondary T cell responses and consequent clinical disease. Interestingly, whereas thrombospondin-1-deficient dendritic cells augmented activity of allergen-primed T cells, this increase was not recapitulated with naïve T cells in vitro. The role of dendritic cell-derived thrombospondin-1 in regulating secondary allergic T cell responses was confirmed in vivo, as local transfer of thrombospondin-1-sufficient dendritic cells to the ocular mucosa of thrombospondin-1 null hosts prevented the development of augmented secondary T cell responses and heightened allergic eye disease clinical responses. Finally, we demonstrate that topical instillation of thrombospondin-1-derived peptide reduces T cell activity and clinical progression of allergic eye disease. Taken together, this study reveals an important modulatory role of dendritic cell-derived thrombospondin-1 on secondary allergic T cell responses and suggests the possible dysregulation of dendritic cell-derived thrombospondin-1 expression as a factor in allergic eye disease severity. © Society for Leukocyte Biology.
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Smith, R. E.; Reyes, N. J.; Khandelwal, P.; Schlereth, S. L.; Lee, H. S.; Masli, S.; Saban, D. R.
2016-01-01
Allergic eye disease, as in most forms of atopy, ranges in severity among individuals from immediate hypersensitivity to a severe and debilitating chronic disease. Dendritic cells play a key role in stimulating pathogenic T cells in allergen re-exposure, or secondary responses. However, molecular cues by dendritic cells underpinning allergic T cell response levels and the impact that this control has on consequent severity of allergic disease are poorly understood. Here, we show that a deficiency in thrombospondin-1, a matricellular protein known to affect immune function, has subsequent effects on downstream T cell responses during allergy, as revealed in an established mouse model of allergic eye disease. More specifically, we demonstrate that a thrombospondin-1 deficiency specific to dendritic cells leads to heightened secondary T cell responses and consequent clinical disease. Interestingly, whereas thrombospondin-1-deficient dendritic cells augmented activity of allergen-primed T cells, this increase was not recapitulated with naïve T cells in vitro. The role of dendritic cell-derived thrombospondin-1 in regulating secondary allergic T cell responses was confirmed in vivo, as local transfer of thrombospondin-1-sufficient dendritic cells to the ocular mucosa of thrombospondin-1 null hosts prevented the development of augmented secondary T cell responses and heightened allergic eye disease clinical responses. Finally, we demonstrate that topical instillation of thrombospondin-1-derived peptide reduces T cell activity and clinical progression of allergic eye disease. Taken together, this study reveals an important modulatory role of dendritic cell-derived thrombospondin-1 on secondary allergic T cell responses and suggests the possible dysregulation of dendritic cell-derived thrombospondin-1 expression as a factor in allergic eye disease severity. PMID:26856994
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Delgado-Goni, Teresa; Falck Miniotis, Maria; Wantuch, Slawomir; Parkes, Harold G.; Marais, Richard; Workman, Paul; Leach, Martin O.; Beloueche-Babari, Mounia
2016-01-01
Understanding the impact of BRAF signaling inhibition in human melanoma on key disease mechanisms is important for developing biomarkers of therapeutic response and combination strategies to improve long term disease control. This work investigates the downstream metabolic consequences of BRAF inhibition with vemurafenib, the molecular and biochemical processes that underpin them, their significance for antineoplastic activity and potential as non-invasive imaging response biomarkers.1H NMR spectroscopy showed that vemurafenib decreases the glycolytic activity of BRAF mutant (WM266.4 and SKMEL28) but not BRAFWT (CHL-1 and D04) human melanoma cells. In WM266.4 cells, this was associated with increased acetate, glycine and myo-inositol levels and decreased fatty acyl signals, while the bioenergetic status was maintained. 13C NMR metabolic flux analysis of treated WM266.4 cells revealed inhibition of de novo lactate synthesis and glucose utilization, associated with increased oxidative and anaplerotic pyruvate carboxylase mitochondrial metabolism and decreased lipid synthesis. This metabolic shift was associated with depletion of HKII, acyl-CoA dehydrogenase 9, 3-phosphoglycerate dehydrogenase and monocarboxylate transporter (MCT) 1 and 4 in BRAF mutant but not BRAFWT cells and, interestingly, decreased BRAF mutant cell dependency on glucose and glutamine for growth. Further, the reduction in MCT1 expression observed led to inhibition of hyperpolarized 13C-pyruvate-lactate exchange, a parameter that is translatable to in vivo imaging studies, in live WM266.4 cells. In conclusion, our data provide new insights into the molecular and metabolic consequences of BRAF inhibition in BRAF-driven human melanoma cells that may have potential for combinatorial therapeutic targeting as well as non-invasive imaging of response. PMID:27765851
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Mapping the Carbon Footprint of Nations.
Kanemoto, Keiichiro; Moran, Daniel; Hertwich, Edgar G
2016-10-04
Life cycle thinking asks companies and consumers to take responsibility for emissions along their entire supply chain. As the world economy becomes more complex it is increasingly difficult to connect consumers and other downstream users to the origins of their greenhouse gas (GHG) emissions. Given the important role of subnational entities-cities, states, and companies-in GHG abatement efforts, it would be advantageous to better link downstream users to facilities and regulators who control primary emissions. We present a new spatially explicit carbon footprint method for establishing such connections. We find that for most developed countries the carbon footprint has diluted and spread: for example, since 1970 the U.S. carbon footprint has grown 23% territorially, and 38% in consumption-based terms, but nearly 200% in spatial extent (i.e., the minimum area needed to contain 90% of emissions). The rapidly growing carbon footprints of China and India, however, do not show such a spatial expansion of their consumption footprints in spite of their increasing participation in the world economy. In their case, urbanization concentrates domestic pollution and this offsets the increasing importance of imports.
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Simulations of laminar boundary-layer flow encountering large-scale surface indentions
NASA Astrophysics Data System (ADS)
Beratlis, N.; Balaras, E.; Squires, K.; Vizard, A.
2016-03-01
The transition from laminar to turbulent flow over dimples and grooves has been investigated through a series of direct numerical simulations. Emphasis has been given to the mechanism of transition and the momentum transport in the post-dimple boundary layer. It has been found that the dimple geometry plays an important role in the evolution of the turbulent boundary layer downstream. The mechanism of transition in all cases is that of the reorientation of the spanwise vorticity into streamwise oriented structures resembling hairpin vortices commonly encountered in wall bounded turbulent flows. Although qualitatively the transition mechanism amongst the three different cases is similar, important quantitative differences exist. It was shown that two-dimensional geometries like a groove are more stable than three-dimensional geometries like a dimple. In addition, it was found that the cavity geometry controls the initial thickness of the boundary layer and practically results in a shift of the virtual origin of the turbulent boundary layer. Important differences in the momentum transport downstream of the dimples exist but in all cases the boundary layer grows in a self-similar manner.
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Cruz, Eric; Kumar, Sushil; Yuan, Li; Arikkath, Jyothi
2018-01-01
Alzheimer’s disease (AD) is a neurodegenerative syndrome classically depicted by the parenchymal accumulation of extracellular amyloid beta plaques. However, recent findings suggest intraneuronal amyloid beta (iAβ1–42) accumulation precedes extracellular deposition. Furthermore, the pathologic increase in iAβ1–42 has been implicated in dysregulation of cellular mechanisms critically important in axonal transport. Owing to neuronal cell polarity, retrograde and anterograde axonal transport are essential trafficking mechanism necessary to convey membrane bound neurotransmitters, neurotrophins, and endosomes between soma and synaptic interfaces. Although iAβ1–42 disruption of axonal transport has been implicated in dysregulation of neuronal synaptic transmission, the role of iAβ1–42 and its influence on signal transduction involving the mitogen-activated protein kinase (MAPK) and morphogenetic signaling axis are unknown. Our biochemical characterization of intracellular amyloid beta accumulation on MAPK and morphogenetic signaling have revealed increased iAβ1–42 expression leads to significant reduction in ERK 1/2 phosphorylation and increased bone morphogenetic protein 2 dependent Smad 1/5/8 phosphorylation. Furthermore, rescue of iAβ1–42 mediated attenuation of MAPK signaling can be accomplished with the small molecule PLX4032 as a downstream enhancer of the MAPK pathway. Consequently, our observations regarding the dysregulation of these gatekeepers of neuronal viability may have important implications in understanding the iAβ1–42 mediated effects observed in AD. PMID:29470488
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Chen, Tsan-Ju; Chen, Shun-Sheng; Wang, Dean-Chuan; Hung, Hui-Shan
2016-11-01
Cholinergic dysfunction in the brain is closely related to cognitive impairment including memory loss. In addition to the degeneration of basal forebrain cholinergic neurons, deficits in the cholinergic receptor signaling may also play an important role. In the present study, to examine the cholinergic signaling pathways responsible for the induction of a memory-related postsynaptic protein, a cholinergic agonist carbachol was used to induce the expression of activity-regulated cytoskeleton associated protein (Arc) in primary rat cortical neurons. After pretreating neurons with various antagonists or inhibitors, the levels of carbachol-induced Arc protein expression were detected by Western blot analysis. The results show that carbachol induces Arc protein expression mainly through activating M1 acetylcholine receptors and the downstream phospholipase C pathway, which may lead to the activation of the MAPK/ERK signaling pathway. Importantly, carbachol-mediated M2 receptor activation exerts negative effects on Arc protein expression and thus counteracts the enhanced effects of M1 activation. Furthermore, it is suggested for the first time that M1-mediated enhancement of N-methyl-D-aspartate receptor (NMDAR) responses, leading to Ca(2+) entry through NMDARs, contributes to carbachol-induced Arc protein expression. These findings reveal a more complete cholinergic signaling that is responsible for carbachol-induced Arc protein expression, and thus provide more information for developing treatments that can modulate cholinergic signaling and consequently alleviate cognitive impairment. J. Cell. Physiol. 231: 2428-2438, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.
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Cue-induced cigarette cravings and smoking cessation: the role of expectancies.
Erblich, Joel; Montgomery, Guy H
2012-07-01
Cue-induced cigarette cravings have been oft studied as potentially important predictors of smoking cessation outcomes. The literature on the relationship between cue-induced cravings and cessation, however, remains mixed. One possible explanation for the discrepant results in the literature may be the as-yet untested variability in expectancies of craving. Indeed, as with many interoceptive responses, cravings and their downstream consequences may be influenced by expectancies. To date, no study has examined the influence of expected cravings following smoking cue exposures on actual craving experiences and cessation outcomes. The objective of this study, therefore, was to test the possibility that smokers' expected craving levels in response to smoking cues would be related to actual cravings following cue exposure and that expected cravings would be related to cessation outcomes. Nicotine-dependent adult smokers (n = 153) were exposed to sets of neutral and smoking cues and completed questionnaires assessing (a) prior to the exposures, the cigarette craving levels they expected to experience following the cue exposures and (b) following the exposures, their actual craving levels. Participants also reported the duration of their most recent quit attempt and their perceived future quit difficulty. Findings indicated that expected cravings assessed prior to the cue exposures were significantly related to actual cravings following the exposures. In addition, both expected cravings and actual cravings were related to shorter previous quit duration and higher perceived quit difficulty. Study results highlight the importance of considering both expected and actual cravings in cue-induced craving paradigms.
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Gordon, Grant R J; Howarth, Clare; MacVicar, Brian A
2016-01-01
Altering cerebral blood flow through the control of cerebral vessel diameter is critical so that the delivery of molecules important for proper brain functioning is matched to the activity level of neurons. Although the close relationship of brain glia known as astrocytes with cerebral blood vessels has long been recognized, it is only recently that these cells have been demonstrated to translate information on the activity level and energy demands of neurons to the vasculature. In particular, astrocytes respond to elevations in extracellular glutamate as a consequence of synaptic transmission through the activation of group 1 metabotropic glutamate receptors. These Gq-protein coupled receptors elevate intracellular calcium via IP3 signaling. A close examination of astrocyte endfeet calcium signals has been shown to cause either vasoconstriction or vasodilation. Common to both vasomotor responses is the generation of arachidonic acid in astrocytes by calcium sensitive phospholipase A2. Vasoconstriction ensues from the conversion of arachidonic acid to 20-hydroxyeicosatetraenoic acid, while vasodilation ensues from the production of epoxyeicosatrienoic acids or prostaglandins. Factors that determine whether constrictor or dilatory pathways predominate include brain oxygen, lactate, adenosine as well as nitric oxide. Changing the oxygen level itself leads to many downstream changes that facilitate the switch from vasoconstriction at high oxygen to vasodilation at low oxygen. These findings highlight the importance of astrocytes as sensors of neural activity and metabolism to coordinate the delivery of essential nutrients via the blood to the working cells.
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Fazal, Fabeha; Minhajuddin, Mohd; Bijli, Kaiser M; McGrath, James L; Rahman, Arshad
2007-02-09
Activation of the transcription factor NF-kappaB involves its release from the inhibitory protein IkappaBalpha in the cytoplasm and subsequently, its translocation to the nucleus. Whereas the events responsible for its release have been elucidated, mechanisms regulating the nuclear transport of NF-kappaB remain elusive. We now provide evidence for actin cytoskeleton-dependent and -independent mechanisms of RelA/p65 nuclear transport using the proinflammatory mediators, thrombin and tumor necrosis factor alpha, respectively. We demonstrate that thrombin alters the actin cytoskeleton in endothelial cells and interfering with these alterations, whether by stabilizing or destabilizing the actin filaments, prevents thrombin-induced NF-kappaB activation and consequently, expression of its target gene, ICAM-1. The blockade of NF-kappaB activation occurs downstream of IkappaBalpha degradation and is associated with impaired RelA/p65 nuclear translocation. Importantly, thrombin induces association of RelA/p65 with actin and this interaction is sensitive to stabilization/destabilization of the actin filaments. In parallel studies, stabilizing or destabilizing the actin filaments fails to inhibit RelA/p65 nuclear accumulation and ICAM-1 expression by tumor necrosis factor alpha, consistent with its inability to induce actin filament formation comparable with thrombin. Thus, these studies reveal the existence of actin cytoskeleton-dependent and -independent pathways that may be engaged in a stimulus-specific manner to facilitate RelA/p65 nuclear import and thereby ICAM-1 expression in endothelial cells.
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Matamoros, Víctor; Rodríguez, Yolanda
2017-11-01
Treated wastewater from small communities is discharged into rivers or streams with a high biodiversity value. This is particularly important in Mediterranean countries, where most of the streams are dry almost all year round. This preliminary study assessed the occurrence and attenuation of 23 emerging contaminants (ECs) in 4 wastewater-dominated streams in which treated wastewater accounted for the entire stream flow. The concentration of ECs was monitored in the warm and cold seasons in the wastewater treatment plant (WWTP) effluent and at 6 downstream locations. The concentration of ECs in the WWTP effluents ranged from undetected to 12 μg L -1 . The attenuation of ECs 1 km downstream ranged from no removal to up to 80% (48% on average). The half-lives of ECs in the 4 streams ranged from 0.4 to 20 h (3.9 ± 3.5 h on average). Compounds such as benzodiazepine drugs and flame retardants were the most recalcitrant (half-lives >5 h). The highest attenuation of ECs and ammonia was observed in the stream completely covered by vegetation. The cumulative hazardous quotient 1 km downstream was reduced on average by more than 60%. Therefore, the results suggest that both seasonality and vegetation play an important role in in-stream attenuation of ECs. Copyright © 2017 Elsevier Ltd. All rights reserved.
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Buccola, Norman L.; Rounds, Stewart A.; Sullivan, Annett B.; Risley, John C.
2012-01-01
Detroit Dam was constructed in 1953 on the North Santiam River in western Oregon and resulted in the formation of Detroit Lake. With a full-pool storage volume of 455,100 acre-feet and a dam height of 463 feet, Detroit Lake is one of the largest and most important reservoirs in the Willamette River basin in terms of power generation, recreation, and water storage and releases. The U.S. Army Corps of Engineers operates Detroit Dam as part of a system of 13 reservoirs in the Willamette Project to meet multiple goals, which include flood-damage protection, power generation, downstream navigation, recreation, and irrigation. A distinct cycle in water temperature occurs in Detroit Lake as spring and summer heating through solar radiation creates a warm layer of water near the surface and isolates cold water below. Controlling the temperature of releases from Detroit Dam, therefore, is highly dependent on the location, characteristics, and usage of the dam's outlet structures. Prior to operational changes in 2007, Detroit Dam had a well-documented effect on downstream water temperature that was problematic for endangered salmonid fish species, releasing water that was too cold in midsummer and too warm in autumn. This unnatural seasonal temperature pattern caused problems in the timing of fish migration, spawning, and emergence. In this study, an existing calibrated 2-dimensional hydrodynamic water-quality model [CE-QUAL-W2] of Detroit Lake was used to determine how changes in dam operation or changes to the structural release points of Detroit Dam might affect downstream water temperatures under a range of historical hydrologic and meteorological conditions. The results from a subset of the Detroit Lake model scenarios then were used as forcing conditions for downstream CE-QUAL-W2 models of Big Cliff Reservoir (the small reregulating reservoir just downstream of Detroit Dam) and the North Santiam and Santiam Rivers. Many combinations of environmental, operational, and structural options were explored with the model scenarios. Multiple downstream temperature targets were used along with three sets of environmental forcing conditions representing cool/wet, normal, and hot/dry conditions. Five structural options at Detroit Dam were modeled, including the use of existing outlets, one hypothetical variable-elevation outlet such as a sliding gate, a hypothetical combination of a floating outlet and a fixed-elevation outlet, and a hypothetical combination of a floating outlet and a sliding gate. Finally, 14 sets of operational guidelines for Detroit Dam were explored to gain an understanding of the effects of imposing different downstream minimum streamflows, imposing minimum outflow rules to specific outlets, and managing the level of the lake with different timelines through the year. Selected subsets of these combinations of operational and structural scenarios were run through the downstream models of Big Cliff Reservoir and the North Santiam and Santiam Rivers to explore how hypothetical changes at Detroit Dam might provide improved temperatures for endangered salmonids downstream of the Detroit-Big Cliff Dam complex. Conclusions that can be drawn from these model scenarios include: *The water-temperature targets set by the U.S. Army Corps of Engineers for releases from Detroit Dam can be met through a combination of new dam outlets or a delayed drawdown of the lake in autumn. *Spring and summer dam operations greatly affect the available release temperatures and operational flexibility later in the autumn. Releasing warm water during midsummer tends to keep more cool water available for release in autumn. *The ability to meet downstream temperature targets during spring depends on the characteristics of the available outlets. Under existing conditions, although warm water sometimes is present at the lake surface in spring and early summer, such water may not be available for release if the lake level is either well below or well above the spillway crest. *Managing lake releases to meet downstream temperature targets depends on having outlet structures that can access both (warm) lake surface water and (cold) deeper lake water throughout the year. The existing outlets at Detroit Dam do not allow near-surface waters to be released during times when the lake surface level is below the spillway (spring and autumn). *Using the existing outlets at Detroit Dam, lake level management is important to the water temperature of releases because it controls the availability and depth of water at the spillway. When lake level is lowered below the spillway crest in late summer, the loss of access to warm water at the lake surface can result in abrupt changes to release temperatures. *Because the power-generation intakes (penstocks) are 166 feet below the full-pool lake level, imposing minimum power production requirements at Detroit Dam limits the amount of warm surface water that can be expelled from the lake in midsummer, thereby postponing and amplifying warm outflows from Detroit Lake into the autumn spawning season. *Likewise, imposing minimum power production requirements at Detroit Dam in autumn can limit the amount of cool hypolimnetic water that is released from the lake, thereby limiting cool outflows from Detroit Lake during the autumn spawning season. *Model simulations indicate that a delayed drawdown of Detroit Lake in autumn would result in better control over release temperatures in the immediate downstream vicinity of Big Cliff Dam, but the reduced outflows necessary to retain more water in the lake in late summer are more susceptible to rapid heating downstream. *Compared to the existing outlets at Detroit Dam, floating or sliding-gate outlet structures can provide greater control over release temperatures because they provide better access to warm water at the lake surface and cooler water at depth. These conclusions can be grouped into several common themes. First, optimal and flexible management and achievement of downstream temperature goals requires that releases of warm water near the surface of the lake and cold water below the thermocline are both possible with the available dam outlets during spring, summer, and autumn. This constraint can be met to some extent with existing outlets, but only if access to the spillway is extended into autumn by keeping the lake level higher than called for by the current rule curve (the typical target water-surface elevation throughout the year). If new outlets are considered, a variable-elevation outlet such as a sliding gate structure, or a floating outlet in combination with a fixed-elevation outlet at sufficient depth to access cold water, is likely to work well in terms of accessing a range of water temperatures and achieving downstream temperature targets. Furthermore, model results indicate that it is important to release warm water from near the lake surface during midsummer. If not released downstream, the warm water will build up at the top of the lake as a result of solar energy inputs and the thermocline will deepen, potentially causing warm water to reach the depth of deeper fixed-elevation outlets in autumn, particularly when the lake level is drawn down to make room for flood storage. Delaying the drawdown in autumn can help to keep the thermocline above such outlets and preserve access to cold water. Although it is important to generate hydropower at Detroit Dam, minimum power-production requirements limit the ability of dam operators to meet downstream temperature targets with existing outlet structures. The location of the power penstocks below the thermocline in spring and most of summer causes the release of more cool water during summer than is optimal. Reducing the power-production constraint allows the temperature target to be met more frequently, but at the cost of less power generation. Finally, running the Detroit Dam, Big Cliff Dam, and North Santiam and Santiam River models in series allows dam operators to evaluate how different operational strategies or combinations of new dam outlets might affect downstream temperatures for many miles of critical endangered salmonid habitat. Temperatures can change quickly in these downstream reaches as the river exchanges heat with its surroundings, and heating or cooling of 6 degrees Celsius is not unusual in the 40–50 miles downstream of Big Cliff Dam. The results published in this report supersede preliminary results published in U.S. Geological Survey Open-File Report 2011-1268 (Buccola and Rounds, 2011). Those preliminary results are still valid, but the results in this report are more current and comprehensive.
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Predicting and generalizing the refuge function of intermittent and ephemeral streams
Intermittent and ephemeral streams can provide important functions within stream networks. For fish, intermittent and ephemeral streams can contribute energy and materials to downstream perennial waters, serve as seasonal habitats, and/or provide refuge functions. Understanding t...
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Mountains, Climate Change and North American Water Security
NASA Astrophysics Data System (ADS)
Pomeroy, J. W.; Fang, X.; Whitfield, P. H.; Rasouli, K.; Harder, P.; Siemens, E.; Pradhananga, D.
2016-12-01
The juxtaposition of cold high precipitation catchments in mountains and low precipitation in downstream lowlands means that mountain water supplies support over half the world's population and sustain most irrigation agriculture. How secure is this mountain water in northern North America? Irrigation and other consumptive downstream uses have put immense pressure on water supplied from the Canadian Rockies. Excess water from these rivers also carries risk. Downstream communities are often located in the flood plains of mountain rivers, making them subject to the extreme hydrometeorology of the headwaters as was evident in the BC/Alberta/Saskatchewan floods of 2013 and droughts of 2015/2016. Climate change is disproportionately warming high mountain areas and the impacts of warming on water are magnified in high mountains because seasonal snowpacks, perennial snowfields and glaciers form important stores of water and control the timing of release of water and the seasonal and annual discharge of major mountain rivers. Changes in mountain snow and glacial regimes are rapidly occurring in Western Canada and this is already impacting downstream water security by changing flood risk, streamflow timing and volume. Hydrological process modelling is diagnosing the causes of intensification of hydrological cycling and coupled to climate models suggesting that the timing and quantity of mountain waters will shift under certain climate, glacier cover and forest cover scenarios and so impact the water security of downstream food production. So far, changes in precipitation are matched by evapotranspiration and sublimation providing some resilience to change in streamflow due to intensification of hydrological cycling. Faster glacier melt in drought periods has buffered low flows but this capacity id dwindling as glaciers ablate. The International Network for Alpine Research Catchment Hydrology (INARCH) project of GEWEX is quantifying water resiliency and risk in mountain headwaters so as to better assess the water security of downstream regions. INARCH results from Western Canada suggest current mountain river resiliency is at risk from increased climate variability as rainfall runoff replaces snowmelt and glacier melt runoff processes.
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Kremer, Kimberly N.; Clift, Ian C.; Miamen, Alexander G.; Bamidele, Adebowale O.; Qian, Nan-Xin; Humphreys, Troy D.; Hedin, Karen E.
2011-01-01
The CXCR4 chemokine receptor is a G protein-coupled receptor (GPCR) that signals in T lymphocytes by forming a heterodimer with the T cell antigen receptor (TCR). CXCR4 and TCR functions are consequently highly cross-regulated, affecting T cell immune activation, cytokine secretion, and T cell migration. The CXCR4-TCR heterodimer stimulates T cell migration and activation of the ERK MAP kinase and downstream AP-1-dependent cytokine transcription in response to SDF-1, the sole chemokine ligand of CXCR4. These responses require Gi-type G proteins as well as TCR ITAM domains and the ZAP-70 tyrosine kinase, thus indicating that the CXCR4-TCR heterodimer signals to integrate GPCR-associated and TCR-associated signaling molecules in response to SDF-1. Yet, the phospholipase C (PLC) isozymes responsible for coupling the CXCR4-TCR heterodimer to distinct downstream cellular responses are incompletely characterized. Here, we demonstrate that PLC activity is required for SDF-1 to induce ERK activation, migration, and CXCR4 endocytosis in human T cells. SDF-1 signaling via the CXCR4-TCR heterodimer uses PLC-β3 to activate the Ras-ERK pathway and increase intracellular Ca2+ concentrations, while PLC-γ1 is dispensable for these outcomes. In contrast, PLC-γ1, but not PLC-β3, is required for SDF-1-mediated migration, via a mechanism independent of LAT. These results increase understanding of the signaling mechanisms employed by the CXCR4-TCR heterodimer, characterize new roles for PLC-β3 and PLC-γ1 in T cells, and suggest that multiple PLCs may also be activated downstream of other chemokine receptors in order to distinctly regulate migration versus other signaling functions. PMID:21705626
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Haack, Sheridan K.; Duris, Joseph W.; Kolpin, Dana W.; Fogarty, Lisa R.; Johnson, Heather E.; Gibson, Kristen E.; Focazio, Michael J.; Schwab, Kellogg J.; Hubbard, Laura E.; Foreman, William T.
2015-01-01
Manure spills to streams are relatively frequent, but no studies have characterized stream contamination with zoonotic and veterinary pathogens, or fecal chemicals, following a spill. We tested stream water and sediment over 25 days and downstream for 7.6 km for: fecal indicator bacteria (FIB); the fecal indicator chemicals cholesterol and coprostanol; 20 genes for zoonotic and swine-specific bacterial pathogens by presence/absence polymerase chain reaction (PCR) for viable cells; one swine-specific Escherichia coli toxin gene (STII) by quantitative PCR (qPCR); and nine human and animal viruses by qPCR, or reverse-transcriptase qPCR. Twelve days post-spill, and 4.2 km downstream, water concentrations of FIB, cholesterol, and coprostanol were 1-2 orders of magnitude greater than those detected before, or above, the spill, and genes indicating viable zoonotic or swine-infectious Escherichia coli, were detected in water or sediment. STII increased from undetectable before, or above the spill, to 105 copies/100 mL water 12 days post-spill. Thirteen of 14 water (8/9 sediment) samples had viable STII-carrying cells post-spill. Eighteen days post-spill porcine adenovirus and teschovirus were detected 5.6 km downstream. Sediment FIB concentrations (per gram wet weight) were greater than in water, and sediment was a continuous reservoir of genes and chemicals post-spill. Constituent concentrations were much lower, and detections less frequent, in a runoff event (200 days post-spill) following manure application, although the swine-associated STII and stx2e genes were detected. Manure spills are an underappreciated pathway for livestock-derived contaminants to enter streams, with persistent environmental outcomes, and the potential for human and veterinary health consequences.
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Traveling waves in an optimal velocity model of freeway traffic.
Berg, P; Woods, A
2001-03-01
Car-following models provide both a tool to describe traffic flow and algorithms for autonomous cruise control systems. Recently developed optimal velocity models contain a relaxation term that assigns a desirable speed to each headway and a response time over which drivers adjust to optimal velocity conditions. These models predict traffic breakdown phenomena analogous to real traffic instabilities. In order to deepen our understanding of these models, in this paper, we examine the transition from a linear stable stream of cars of one headway into a linear stable stream of a second headway. Numerical results of the governing equations identify a range of transition phenomena, including monotonic and oscillating travelling waves and a time- dependent dispersive adjustment wave. However, for certain conditions, we find that the adjustment takes the form of a nonlinear traveling wave from the upstream headway to a third, intermediate headway, followed by either another traveling wave or a dispersive wave further downstream matching the downstream headway. This intermediate value of the headway is selected such that the nonlinear traveling wave is the fastest stable traveling wave which is observed to develop in the numerical calculations. The development of these nonlinear waves, connecting linear stable flows of two different headways, is somewhat reminiscent of stop-start waves in congested flow on freeways. The different types of adjustments are classified in a phase diagram depending on the upstream and downstream headway and the response time of the model. The results have profound consequences for autonomous cruise control systems. For an autocade of both identical and different vehicles, the control system itself may trigger formations of nonlinear, steep wave transitions. Further information is available [Y. Sugiyama, Traffic and Granular Flow (World Scientific, Singapore, 1995), p. 137].
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Domingos, Fabricio F T; Thomé, Ralph G; Arantes, Fabio P; Castro, Antonio Carlos S; Sato, Yoshimi; Bazzoli, Nilo; Rizzo, Elizete
2012-12-01
River damming and building of hydroelectric power plants interrupt the reproductive migration routes and change the major physicochemical parameters of water quality, with drastic consequences for populations of migratory fishes. The goal of this study was to evaluate proliferation and cell death during spermatogenesis and serum profiles of sex steroids in Prochilodus argenteus, from the São Francisco River, downstream from the Três Marias Dam. A total of 257 adult males were caught quarterly during a reproductive cycle in two sites: the first 34 km of the river after the dam (site 1) and the second 34-54 km after the dam (site 2), after the confluence with a tributary, the Abaeté River. Seasonal changes in the testicular activity associated with morphometric analyses of germ cells as well as proliferation and testicular apoptosis support a more active spermatogenesis in fish from site 2, where higher levels of sex steroids and gonadosomatic index (GSI) were also found. In site 1, fish presented low serum levels of testosterone, 17β-estradiol and 17α-hydroxyprogesterone and a low GSI during gonadal maturation. Spermatogonial proliferation (PCNA) and apoptosis (TUNEL) were more elevated in fish from site 1, but spermatocytes were mainly labelled in fish from site 2. Overall, these data demonstrate changes in testicular activity and plasma sex steroids in a neotropical teleost fish living downstream from a hydroelectric dam, supplying new data on fish reproduction in regulated rivers. Moreover, morphometric analyses associated with sex steroids profiles provide reliable tools to assess fish spermatogenesis under environmental stress conditions.
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Traveling waves in an optimal velocity model of freeway traffic
NASA Astrophysics Data System (ADS)
Berg, Peter; Woods, Andrew
2001-03-01
Car-following models provide both a tool to describe traffic flow and algorithms for autonomous cruise control systems. Recently developed optimal velocity models contain a relaxation term that assigns a desirable speed to each headway and a response time over which drivers adjust to optimal velocity conditions. These models predict traffic breakdown phenomena analogous to real traffic instabilities. In order to deepen our understanding of these models, in this paper, we examine the transition from a linear stable stream of cars of one headway into a linear stable stream of a second headway. Numerical results of the governing equations identify a range of transition phenomena, including monotonic and oscillating travelling waves and a time- dependent dispersive adjustment wave. However, for certain conditions, we find that the adjustment takes the form of a nonlinear traveling wave from the upstream headway to a third, intermediate headway, followed by either another traveling wave or a dispersive wave further downstream matching the downstream headway. This intermediate value of the headway is selected such that the nonlinear traveling wave is the fastest stable traveling wave which is observed to develop in the numerical calculations. The development of these nonlinear waves, connecting linear stable flows of two different headways, is somewhat reminiscent of stop-start waves in congested flow on freeways. The different types of adjustments are classified in a phase diagram depending on the upstream and downstream headway and the response time of the model. The results have profound consequences for autonomous cruise control systems. For an autocade of both identical and different vehicles, the control system itself may trigger formations of nonlinear, steep wave transitions. Further information is available [Y. Sugiyama, Traffic and Granular Flow (World Scientific, Singapore, 1995), p. 137].
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Walters, Jewell N.; Bickford, Justin S.; Beachy, Dawn E.; Newsom, Kimberly J.; Herlihy, John-David H.; Peck, Molly V.; Qiu, Xiaolei; Nick, Harry S.
2011-01-01
Cytosolic phospholipase A2α (cPLA2α) is the most widely studied member of the Group IV PLA2 family. The enzyme is Ca2+-dependent with specificity for phospholipid substrates containing arachidonic acid. As the pinnacle of the arachidonic acid pathway, cPLA2α has a primary role in the biosynthesis of a diverse family of eicosanoid metabolites, with potent physiological, inflammatory and pathological consequences. cPLA2α activity is regulated by pro-inflammatory stimuli through pathways involving increased intracellular Ca2+ levels, phosphorylation coupled to increased enzymatic activity and de novo gene transcription. This study addresses the signal transduction pathways for protein phosphorylation and gene induction following IL-1β stimulation in human fetal lung fibroblasts. Our results utilizing both inhibitors and kinase-deficient cells demonstrate that cPLA2α is phosphorylated within 10 min of IL-1β treatment, an event requiring p38 MAPK as well as the upstream kinase, MKK3/MKK6. Inhibition of p38 MAPK also blocks the phosphorylation of a downstream, nuclear kinase, MSK-1. Our results further demonstrate that the activities of both cPLA2α and a downstream lipoxygenase (15-LOX2) are required for IL-1β-dependent induction of cPLA2α mRNA expression. Overall, these data support an MKK3/MKK6→p38 MAPK→MSK-1→cPLA2α→15-LOX2-dependent, positive feedback loop where a protein’s enzymatic activity is required to regulate its own gene induction by a pro-inflammatory stimulus. PMID:21771656
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White sturgeon (Acipenser transmontanus) passage at the Dalles Dam, Columbia River, USA
Parsley, M.J.; Wright, C.D.; Van Der Leeuw, B. K.; Kofoot, E.E.; Peery, C.A.; Moser, M.L.
2007-01-01
White sturgeon (Acipenser transmontanus) ???95 cm TL were monitored using acoustic and radio telemetry at a large hydroelectric dam (the Dalles Dam) on the Columbia River, during March 2004 through November 2005 to determine timing and routes of passage and to characterize general movements. Transmitters were surgically implanted into 148 fish during the study; 90 were released into the tailrace and 58 into the forebay. We documented 26 passage events by 19 tagged fish: eight upstream via fish ladders and 18 downstream, mostly through open spill gates. During the study 17 fish entered the two ladders one or more times; 11 entered only the east ladder, three entered only the north ladder, and three entered both ladders at sometime. Residence time within the ladders by individual fish was variable, ranging from about 1 min to nearly 6 months (median = 7.7 h). Only six fish successfully ascended the east ladder, one fish twice. We could not unequivocally determine which fish ladder one fish used to pass upstream. Differences in construction between the north and east fish ladders may account for the greater success of the east fish ladder in passing sturgeon upstream. Changes to operations at hydroelectric dams to benefit migrating anadromous salmonids may influence upstream or downstream passage by white sturgeon. Altering patterns and timing of spill discharge, altering fish ladder entrance attraction flows, and the use of lights, sound, and partial barriers to direct other species of fish to preferred passage routes have unknown effects on sturgeon passage. A better understanding of the consequences to the metapopulation of increasing or precluding upstream or downstream passage is needed. ?? 2007 The Authors.
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Zonato, Valeria; Fedele, Giorgio; Kyriacou, Charalambos P
2016-01-01
couch potato (cpo) encodes an RNA binding protein that has been reported to be expressed in the peripheral and central nervous system of embryos, larvae and adults, including the major endocrine organ, the ring gland. A polymorphism in the D. melanogaster cpo gene coding region displays a latitudinal cline in frequency in North American populations, but as cpo lies within the inversion In(3R)Payne, which is at high frequencies and itself shows a strong cline on this continent, interpretation of the cpo cline is not straightforward. A second downstream SNP in strong linkage disequilibrium with the first has been claimed to be primarily responsible for the latitudinal cline in diapause incidence in USA populations.Here, we investigate the frequencies of these two cpo SNPs in populations of Drosophila throughout continental Europe. The advantage of studying cpo variation in Europe is the very low frequency of In(3R)Payne, which we reveal here, does not appear to be clinally distributed. We observe a very different geographical scenario for cpo variation from the one in North America, suggesting that the downstream SNP does not play a role in diapause. In an attempt to verify whether the SNPs influence diapause we subsequently generated lines with different combinations of the two cpo SNPs on known timeless (tim) genetic backgrounds, because polymorphism in the clock gene tim plays a significant role in diapause inducibility. Our results reveal that the downstream cpo SNP does not seem to play any role in diapause induction in European populations in contrast to the upstream coding cpo SNP. Consequently, all future diapause studies on strains of D. melanogaster should initially determine their tim and cpo status.
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Factors Affecting Source-Water Quality after Disturbance of Forests by Wildfire
NASA Astrophysics Data System (ADS)
Murphy, S. F.; Martin, D. A.; McCleskey, R. B.; Writer, J. H.
2015-12-01
Forests yield high-quality water supplies to communities throughout the world, in part because forest cover reduces flooding and the consequent transport of suspended and dissolved constituents to surface water. Disturbance by wildfire reduces or eliminates forest cover, leaving watersheds susceptible to increased surface runoff during storms and reduced ability to retain contaminants. We assessed water-quality response to hydrologic events for three years after a wildfire in the Fourmile Creek Watershed, near Boulder, Colorado, and found that hydrologic and geochemical responses downstream of a burned area were primarily driven by small, brief convective storms that had relatively high, but not unusual, rainfall intensity. Total suspended sediment, dissolved organic carbon, nitrate, and manganese concentrations were 10-156 times higher downstream of a burned area compared to upstream, and water quality was sufficiently impaired to pose water-treatment concerns. The response in both concentration and yield of water-quality constituents differed depending on source availability and dominant watershed processes controlling the constituent. For example, while all constituent concentrations were highest during storm events, annual sediment yields downstream of the burned area were controlled by storm events and subsequent mobilization, whereas dissolved organic carbon yields were more dependent on spring runoff from upstream areas. The watershed response was affected by a legacy of historical disturbance: the watershed had been recovering from extensive disturbance by mining, railroad and road development, logging, and fires in the late 19th and early 20th centuries, and we observed extensive erosion of mine waste in response to these summer storms. Therefore, both storm characteristics and historical disturbance in a burned watershed must be considered when evaluating the role of wildfire on water quality.
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Opsahl, Stephen P.; Lambert, Rebecca B.
2013-01-01
The distributional patterns of detections and concentrations of individual compounds and compound classes show the influence of wastewater-treatment plant (WWTP) outfalls on the quality of water in the San Antonio River Basin. In the Medina River Subbasin, the minimal influence of wastewater is evident as far downstream as the Macdona site. Downstream from the Macdona site, the Medina River receives treated municipal wastewater from both the Medio Creek Water Recycling Center site from an unnamed tributary at the plant and the Leon Creek Water Recycling Center site from Comanche Creek at the plant, and corresponding increases in both the number of detections and the total concentrations of all measured compounds at all downstream sampling sites were evident. Similarly, the San Antonio River receives treated municipal wastewater as far upstream as the SAR Witte site (San Antonio River at Witte Museum, San Antonio, Tex.) and additional WWTP outfalls along the Medina River upstream from the confluence of the Medina and San Antonio Rivers. Consequently, all samples collected along the main stem of the San Antonio River had higher concentrations of CECs in comparison to sites without upstream WWTPs. Sites in urbanized areas without upstream WWTPs include the Leon 35 site (Leon Creek at Interstate Highway 35, San Antonio, Tex.), the Alazan site (Alazan Creek at Tampico Street, San Antonio, Tex.), and the San Pedro site (San Pedro Creek at Probandt Street, at San Antonio, Tex.). The large number of detections at sites with no upstream wastewater source demonstrated that CECs can be detected in streams flowing through urbanized areas without a large upstream source of treated municipal wastewater. A general lack of detection of pharmaceuticals in streams without upstream outfalls of treated wastewater appears to be typical for streams throughout the San Antonio River Basin and may be a useful indicator of point-source versus nonpoint-source contributions of these compounds in urban streams. Observations of lower concentrations of compounds at the furthest downstream sampling sites in the basin indicate some natural attenuation of these compounds during transport; however, a more focused assessment is needed to make this determination.
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DOWNSTREAM MIGRATION OF SALMONID SMOLTS IN OREGON RIVERS AND ESTUARIES
Migratory fish passage is an important designated use for many Oregon estuaries. Acoustic transmitters were implanted in coho smolts in 2004 and 2006 to evaluate how estuarine habitat, and habitat loss, might affect population health. Acoustic receivers that identified individu...
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Assessing integrity of insect RNA
USDA-ARS?s Scientific Manuscript database
Assessing total RNA integrity is important for the success of downstream RNA applications. The 2100 Bioanalyzer system with the RNA Integrity Number (RIN) provides a quantitative measure of RNA degradation. Although RINs may not be ascertained for RNA from all organisms, namely those with unusual or...
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Downstream change of velocity in rivers
Leopold, Luna Bergere
1953-01-01
Because river slope generally decreases in a downstream direction, it is generally supposed that velocity of flow also decreases downstream. Analysis of some of the large number of velocity measurements made at stream-gaging stations demonstrates that mean velocity generally tends to increase downstream. Although there are many reaches in nearly all rivers where mean velocity decreases downstream, the general tendency for conservation or for downstream increase was found in all data studied.Computations of bed velocity indicate that this parameter also tends to increase downstream.Near the streambed, shear in the vertical profile of velocity (rate of decrease of velocity with depth) tends to decrease downstream. This down-valley decrease of shear implies decreasing competence downstream.
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NASA Astrophysics Data System (ADS)
Leibowitz, S. G.; Hill, R. A.; Weber, M.; Jones, C., Jr.; Rains, M. C.; Creed, I. F.; Christensen, J.
2017-12-01
Connectivity has become a major focus of hydrological and ecological studies. Connectivity enhances fluxes among landscape features, whereas isolation eliminates or reduces such flows. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrologic connectivity is particularly significant, since chemical and biological flows are often associated with water movement. Wetlands have many important functions, and the degree to which they are hydrologically connected influences the effect they have on downstream waters. Wetlands with high connectivity can serve as sources (e.g., net exporters of dissolved organic carbon), while those with low connectivity can function as sinks (e.g., net importers of suspended sediments). We developed a system to classify wetlands based on type, magnitude, and frequency of hydrologic connectivity with downstream waters. We determined type (riparian, non-riparian surface, and non-riparian subsurface) by considering soil and bedrock permeability. For magnitude, we developed indices to represent travel time based on Manning's kinematic and Darcy's equations. We used soil drainage class as an indicator of frequency. We also included an index that assesses relative level of anthropogenic impacts to connectivity (e.g., presence of canals and ditches and impervious surfaces). The classification system was designed to be applied at various spatial scales using available data. The system was applied to 4.7 million wetlands in the conterminous United States, using the National Land Cover Dataset and other nationally available geospatial data, and the resulting maps were assessed for patterns in wetland connectivity. While wetland connectivity was dominated by fast, frequent riparian connections nationally, distributions of connectivity were characteristic for each region. Consideration of these distributions of connectivity should promote better management of watershed functions such as flood control and water quality improvement.
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Pharmacogenetics of cystic fibrosis treatment.
Carter, Suzanne C; McKone, Edward F
2016-08-01
Cystic fibrosis (CF) is genetic autosomal recessive disease caused by reduced or absent function of CFTR protein. Treatments for patients with CF have primarily focused on the downstream end-organ consequences of defective CFTR. Since the discovery of the CFTR gene that causes CF in 1989 there have been tremendous advances in our understanding of the genetics and pathophysiology of CF. This has recently led to the development of new CFTR mutation-specific targeted therapies for select patients with CF. This review will discuss the characteristics of the CFTR gene, the CFTR mutations that cause CF and the new mutation specific pharmacological treatments including gene therapy that are contributing to the dawning of a new era in cystic fibrosis care.
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A rotating hot-wire technique for spatial sampling of disturbed and manipulated duct flows
NASA Technical Reports Server (NTRS)
Wark, C. E.; Nagib, H. M.; Jennings, M. J.
1990-01-01
A duct flow spatial sampling technique, in which an X-wire probe is rotated about the center of a cylindrical test section at a radius equal to one-half that of the test section in order to furnish nearly instantaneous multipoint measurements of the streamwise and azimuthal components, is presently evaluated in view of the control of flow disturbances downstream of various open inlet contractions. The effectiveness of a particular contraction in controlling ingested flow disturbances was ascertained by artificially introducing disturbances upstream of the contractions; control effectiveness if found to be strongly dependent on inlet contraction, with consequences for the reduction of passing-blade frequency noise during gas turbine engine ground testing.
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NASA Astrophysics Data System (ADS)
Ayela, Frédéric; Medrano-Muñoz, Manuel; Amans, David; Dujardin, Christophe; Brichart, Thomas; Martini, Matteo; Tillement, Olivier; Ledoux, Gilles
2013-10-01
Thermosensitive fluorescent nanoparticles seeded in deionized water combined with confocal microscopy enables thermal mapping over three dimensions of the liquid phase flowing through a microchannel interrupted by a microdiaphragm. This experiment reveals the presence of a strong thermal gradient up to ˜105 K/m only when hydrodynamic cavitation is present. Here hydrodynamic cavitation is the consequence of high shear rates downstream in the diaphragm. This temperature gradient is located in vortical structures associated with eddies in the shear layers. We attribute such overheating to the dissipation involved by the cavitating flow regime. Accordingly, we demonstrate that the microsizes of the device enhance the intensity of the thermal gap.
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The flow dynamics behind a flexible finite cylinder as a flexible agitator
NASA Astrophysics Data System (ADS)
Yong, T. H.; Chan, H. B.; Dol, S. S.; Wee, S. K.; Kumar, P.
2017-06-01
This paper investigates the flow dynamics behind a flexible finite cylinder in a single-phase flow using a water tunnel. The cylinder was individually submerged in water at ReD = 4000, 6000 and 8000. The cylinder investigated has a AR = 10 and 16 and is made of EVA in order to achieve the lower stiffness for flexibility. A same AR of its aluminium rigid cylinder was investigated to serve as a benchmark to the flow dynamics behind a flexible cylinder. The results the downwash that hinders the transportation of vortices to the downstream was diminished. As a direct consequence of this phenomenon, the turbulence production has seen significant improvement for flexible finite cylinder.
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Johnson, Ann Mary; Kartha, C C
2014-04-01
Insulin-like growth factor-1 (IGF-1) is known to promote proliferation in many cell types including c-kit(pos) cardiac stem cells (CSCs). Downstream signaling pathways of IGF-1 induced CSC proliferation have not been investigated. An important downstream target of IGF-1/Akt-1 signaling is FoxO3a, a key negative regulator of cell-cycle progression. We studied the effect of IGF-1 on proliferation of c-kit(pos) murine CSCs and found that IGF-1-mediated cell proliferation is associated with FoxO3a phosphorylation and inactivation of its transcriptional activity. PI3 inhibitors LY294002 and Wortmannin abolished the effect of IGF-1 on FoxO3a phosphorylation indicating that FoxO3a phosphorylation is mediated by PI3/Akt-1 pathway. In cells with FoxO3a translocation to the cytoplasm, there is decreased expression of cell-cycle inhibitors such as p27(kip1) and p57(kip2) and increased expression of CyclinD1. Our study provides evidence that IGF-1 induced CSC proliferation could be the result of FoxO3a inactivation and its downstream effect on cell-cycle regulators.
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The cysteine-rich domain regulates ADAM protease function in vivo.
Smith, Katherine M; Gaultier, Alban; Cousin, Helene; Alfandari, Dominique; White, Judith M; DeSimone, Douglas W
2002-12-09
ADAMs are membrane-anchored proteases that regulate cell behavior by proteolytically modifying the cell surface and ECM. Like other membrane-anchored proteases, ADAMs contain candidate "adhesive" domains downstream of their metalloprotease domains. The mechanism by which membrane-anchored cell surface proteases utilize these putative adhesive domains to regulate protease function in vivo is not well understood. We address this important question by analyzing the relative contributions of downstream extracellular domains (disintegrin, cysteine rich, and EGF-like repeat) of the ADAM13 metalloprotease during Xenopus laevis development. When expressed in embryos, ADAM13 induces hyperplasia of the cement gland, whereas ADAM10 does not. Using chimeric constructs, we find that the metalloprotease domain of ADAM10 can substitute for that of ADAM13, but that specificity for cement gland expansion requires a downstream extracellular domain of ADAM13. Analysis of finer resolution chimeras indicates an essential role for the cysteine-rich domain and a supporting role for the disintegrin domain. These and other results reveal that the cysteine-rich domain of ADAM13 cooperates intramolecularly with the ADAM13 metalloprotease domain to regulate its function in vivo. Our findings thus provide the first evidence that a downstream extracellular adhesive domain plays an active role in regulating ADAM protease function in vivo. These findings are likely relevant to other membrane-anchored cell surface proteases.
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Biological and microbiological assessment of the upper Chattahoochee River basin, Georgia
Lium, Bruce W.; Stamer, J.K.; Ehlke, T.A.; Faye, R.E.; Cherry, R.N.
1979-01-01
Biological and microbiological studies were conducted by the U.S. Geological Survey as a part of the Intensive River-Quality Assessment studies of the upper Chattahoochee River basin, Georgia. Phytoplankton concentrations in cells per milliliter (cells/mL) were generally higher downstream from Atlanta than upstream. The highest concentrations, mostly blue-green algae, occurred in West Point Lake with an average of 90,000 cells/mL for the sampling period. The lowest concentrations, 1,000 cells/mL, occurred upstream of Lake Sidney Lanier. Dissolved orthophosphate and nitrite plus nitrate concentrations were highest in the river reaches and upper reaches of the two lakes and were lowest at the dam pools of both lakes. The high nitrite plus nitrate concentrations downstream from Atlanta were primarily a result of nitrification by Nitrosomonas and Nitrobacter bacteria. Algal growth potential was highest downstream from Atlanta, 25 milligrams per liter (mg/L) at Whitesburg, and was the lowest in the headwaters and at the dam pools of Lake Sidney Lanier and West Point Lake. The rate of nitrification in the Atlanta to Franklin reach of the river was comparatively low, 0.02 mg/L per hour. Nitrification was an important cause of dissolved-oxygen consumption in a 45-mi reach of the river downstream from the Atlanta wastewater treatment facilities. Dissolved-oxygen consumption as a result of nitrification may be greatest during low flow. (Woodard-USGS)
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Flint, Annika; Sun, Yi-Qian; Stintzi, Alain
2012-01-01
Campylobacter jejuni, a microaerophilic bacterium, is the most frequent cause of human bacterial gastroenteritis. C. jejuni is exposed to harmful reactive oxygen species (ROS) produced during its own normal metabolic processes and during infection from the host immune system and from host intestinal microbiota. These ROS will damage DNA and proteins and cause peroxidation of lipids. Consequently, identifying ROS defense mechanisms is important for understanding how Campylobacter survives this environmental stress during infection. Construction of a ΔCj1386 isogenic deletion mutant and phenotypic assays led to its discovery as a novel oxidative stress defense gene. The ΔCj1386 mutant has an increased sensitivity toward hydrogen peroxide. The Cj1386 gene is located directly downstream from katA (catalase) in the C. jejuni genome. A ΔkatAΔ Cj1386 double deletion mutant was constructed and exhibited a sensitivity to hydrogen peroxide similar to that seen in the ΔCj1386 and ΔkatA single deletion mutants. This observation suggests that Cj1386 may be involved in the same detoxification pathway as catalase. Despite identical KatA abundances, catalase activity assays showed that the ΔCj1386 mutant had a reduced catalase activity relative to that of wild-type C. jejuni. Heme quantification of KatA protein from the ΔCj1386 mutant revealed a significant decrease in heme concentration. This indicates an important role for Cj1386 in heme trafficking to KatA within C. jejuni. Interestingly, the ΔCj1386 mutant had a reduced ability to colonize the ceca of chicks and was outcompeted by the wild-type strain for colonization of the gastrointestinal tract of neonate piglets. These results indicate an important role for Cj1386 in Campylobacter colonization and pathogenesis.
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Flint, Annika; Sun, Yi-Qian
2012-01-01
Campylobacter jejuni, a microaerophilic bacterium, is the most frequent cause of human bacterial gastroenteritis. C. jejuni is exposed to harmful reactive oxygen species (ROS) produced during its own normal metabolic processes and during infection from the host immune system and from host intestinal microbiota. These ROS will damage DNA and proteins and cause peroxidation of lipids. Consequently, identifying ROS defense mechanisms is important for understanding how Campylobacter survives this environmental stress during infection. Construction of a ΔCj1386 isogenic deletion mutant and phenotypic assays led to its discovery as a novel oxidative stress defense gene. The ΔCj1386 mutant has an increased sensitivity toward hydrogen peroxide. The Cj1386 gene is located directly downstream from katA (catalase) in the C. jejuni genome. A ΔkatAΔ Cj1386 double deletion mutant was constructed and exhibited a sensitivity to hydrogen peroxide similar to that seen in the ΔCj1386 and ΔkatA single deletion mutants. This observation suggests that Cj1386 may be involved in the same detoxification pathway as catalase. Despite identical KatA abundances, catalase activity assays showed that the ΔCj1386 mutant had a reduced catalase activity relative to that of wild-type C. jejuni. Heme quantification of KatA protein from the ΔCj1386 mutant revealed a significant decrease in heme concentration. This indicates an important role for Cj1386 in heme trafficking to KatA within C. jejuni. Interestingly, the ΔCj1386 mutant had a reduced ability to colonize the ceca of chicks and was outcompeted by the wild-type strain for colonization of the gastrointestinal tract of neonate piglets. These results indicate an important role for Cj1386 in Campylobacter colonization and pathogenesis. PMID:22081390
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Growing knowledge of the mTOR signaling network.
Huang, Kezhen; Fingar, Diane C
2014-12-01
The kinase mTOR (mechanistic target of rapamycin) integrates diverse environmental signals and translates these cues into appropriate cellular responses. mTOR forms the catalytic core of at least two functionally distinct signaling complexes, mTOR complex 1 (mTORC1) and mTOR complex 2 (mTORC2). mTORC1 promotes anabolic cellular metabolism in response to growth factors, nutrients, and energy and functions as a master controller of cell growth. While significantly less well understood than mTORC1, mTORC2 responds to growth factors and controls cell metabolism, cell survival, and the organization of the actin cytoskeleton. mTOR plays critical roles in cellular processes related to tumorigenesis, metabolism, immune function, and aging. Consequently, aberrant mTOR signaling contributes to myriad disease states, and physicians employ mTORC1 inhibitors (rapamycin and analogs) for several pathological conditions. The clinical utility of mTOR inhibition underscores the important role of mTOR in organismal physiology. Here we review our growing knowledge of cellular mTOR regulation by diverse upstream signals (e.g. growth factors; amino acids; energy) and how mTORC1 integrates these signals to effect appropriate downstream signaling, with a greater emphasis on mTORC1 over mTORC2. We highlight dynamic subcellular localization of mTORC1 and associated factors as an important mechanism for control of mTORC1 activity and function. We will cover major cellular functions controlled by mTORC1 broadly. While significant advances have been made in the last decade regarding the regulation and function of mTOR within complex cell signaling networks, many important findings remain to be discovered. Copyright © 2014 Elsevier Ltd. All rights reserved.
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A conceptual framework for hydropeaking mitigation.
Bruder, Andreas; Tonolla, Diego; Schweizer, Steffen P; Vollenweider, Stefan; Langhans, Simone D; Wüest, Alfred
2016-10-15
Hydropower plants are an important source of renewable energy. In the near future, high-head storage hydropower plants will gain further importance as a key element of large-scale electricity production systems. However, these power plants can cause hydropeaking which is characterized by intense unnatural discharge fluctuations in downstream river reaches. Consequences on environmental conditions in these sections are diverse and include changes to the hydrology, hydraulics and sediment regime on very short time scales. These altered conditions affect river ecosystems and biota, for instance due to drift and stranding of fishes and invertebrates. Several structural and operational measures exist to mitigate hydropeaking and the adverse effects on ecosystems, but estimating and predicting their ecological benefit remains challenging. We developed a conceptual framework to support the ecological evaluation of hydropeaking mitigation measures based on current mitigation projects in Switzerland and the scientific literature. We refined this framework with an international panel of hydropeaking experts. The framework is based on a set of indicators, which covers all hydrological phases of hydropeaking and the most important affected abiotic and biotic processes. Effects of mitigation measures on these indicators can be predicted quantitatively using prediction tools such as discharge scenarios and numerical habitat models. Our framework allows a comparison of hydropeaking effects among alternative mitigation measures, to the pre-mitigation situation, and to reference river sections. We further identified key issues that should be addressed to increase the efficiency of current and future projects. They include the spatial and temporal context of mitigation projects, the interactions of river morphology with hydropeaking effects, and the role of appropriate monitoring to evaluate the success of mitigation projects. Copyright © 2016 Elsevier B.V. All rights reserved.
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Biodegradation of 17β-Estradiol, Estrone and Testosterone in Stream Sediments
NASA Astrophysics Data System (ADS)
Bradley, P. M.; Chapelle, F. H.; Barber, L. B.; McMahon, P. B.; Gray, J. L.; Kolpin, D. W.
2009-12-01
The potentials for in situ biodegradation of 17β-estradiol (E2), estrone (E1), and testosterone (T) were investigated in three, hydrologically-distinct, WWTP-impacted streams in the United States. Relative differences in the mineralization of [4-14C] substrates were assessed in oxic microcosms containing sediment or water-only from locations upstream and downstream of the WWTP outfall in each system. Upstream samples provided insight into the biodegradative potential of sediment microbial communities that were not under the immediate impact of WWTP effluent. Upstream sediment from all three systems demonstrated significant mineralization of the “A” ring of E2, E1 and T, with the potential of T biodegradation consistently greater than of E2 and no systematic difference in the potentials of E2 and E1. Downstream samples provided insight into the impacts of effluent on reproductive hormone biodegradation. Significant “A” ring mineralization was also observed in downstream sediment, with the potentials for E1 and T mineralization being substantially depressed relative to upstream samples. In marked contrast, the potentials for E2 mineralization immediately downstream of the WWTP outfalls were more than double that of upstream samples. E2 mineralization was also observed in water, albeit at insufficient rate to prevent substantial downstream transport in the water column. The results of this study indicate that, in combination with sediment sorption processes which effectively scavenge hydrophobic contaminants from the water column and immobilize them in the vicinity of the WWTP outfall, aerobic biodegradation of reproductive hormones can be an environmentally important mechanism for non-conservative (destructive) attenuation of hormonal endocrine disruptors in effluent-impacted streams.
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Li, Fangwei; Shi, Wenhua; Wan, Yixin; Wang, Qingting; Feng, Wei; Yan, Xin; Wang, Jian; Chai, Limin; Zhang, Qianqian; Li, Manxiang
2017-12-01
The expression of microRNA (miR)-140-5p is known to be reduced in both pulmonary arterial hypertension (PAH) patients and monocrotaline-induced PAH models in rat. Identification of target genes for miR-140-5p with bioinformatics analysis may reveal new pathways and connections in PAH. This study aimed to explore downstream target genes and relevant signaling pathways regulated by miR-140-5p to provide theoretical evidences for further researches on role of miR-140-5p in PAH. Multiple downstream target genes and upstream transcription factors (TFs) of miR-140-5p were predicted in the analysis. Gene ontology (GO) enrichment analysis indicated that downstream target genes of miR-140-5p were enriched in many biological processes, such as biological regulation, signal transduction, response to chemical stimulus, stem cell proliferation, cell surface receptor signaling pathways. Kyoto Encyclopedia of Genes and Genome (KEGG) pathway analysis found that downstream target genes were mainly located in Notch, TGF-beta, PI3K/Akt, and Hippo signaling pathway. According to TF-miRNA-mRNA network, the important downstream target genes of miR-140-5p were PPI, TGF-betaR1, smad4, JAG1, ADAM10, FGF9, PDGFRA, VEGFA, LAMC1, TLR4, and CREB. After thoroughly reviewing published literature, we found that 23 target genes and seven signaling pathways were truly inhibited by miR-140-5p in various tissues or cells; most of these verified targets were in accordance with our present prediction. Other predicted targets still need further verification in vivo and in vitro .
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NASA Astrophysics Data System (ADS)
Wenger, Amelia S.; Atkinson, Scott; Santini, Talitha; Falinski, Kim; Hutley, Nicholas; Albert, Simon; Horning, Ned; Watson, James E. M.; Mumby, Peter J.; Jupiter, Stacy D.
2018-04-01
Increasing development in tropical regions provides new economic opportunities that can improve livelihoods, but it threatens the functional integrity and ecosystem services provided by terrestrial and aquatic ecosystems when conducted unsustainably. Given the small size of many islands, communities may have limited opportunities to replace loss and damage to the natural resources upon which they depend for ecosystem service provisioning, thus heightening the need for proactive, integrated management. This study quantifies the effectiveness of management strategies, stipulated in logging codes-of-practice, at minimizing soil erosion and sediment runoff as clearing extent increases, using Kolombangara Island, Solomon Islands as a case study. Further, we examine the ability of erosion reduction strategies to maintain sustainable soil erosion rates and reduce potential downstream impacts to drinking water and environmental water quality. We found that increasing land clearing—even with best management strategies in place—led to unsustainable levels of soil erosion and significant impacts to downstream water quality, compromising the integrity of the land for future agricultural uses, consistent access to clean drinking water, and important downstream ecosystems. Our results demonstrate that in order to facilitate sustainable development, logging codes of practice must explicitly link their soil erosion reduction strategies to soil erosion and downstream water quality thresholds, otherwise they will be ineffective at minimizing the impacts of logging activities. The approach taken here to explicitly examine soil erosion rates and downstream water quality in relation to best management practices and increasing land clearing should be applied more broadly across a range of ecosystems to inform decision-making about the socioeconomic and environmental trade-offs associated with logging, and other types of land use change.
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NASA Astrophysics Data System (ADS)
Leary, K. C. P.; Schmeeckle, M. W.
2017-12-01
Flow separation/reattachment on the lee side of alluvial bed forms is known to produce a complex turbulence field, but the spatiotemporal details of the associated patterns of bed load sediment transported remain largely unknown. Here we report turbulence-resolving, simultaneous measurements of bed load motion and near-bed fluid velocity downstream of a backward facing step in a laboratory flume. Two synchronized high-speed video cameras simultaneously observed bed load motion and the motion of neutrally buoyant particles in a laser light sheet 6 mm above the bed at 250 frames/s downstream of a 3.8 cm backward facing step. Particle Imaging Velocimetry (PIV) and Acoustic Doppler Velocimetry (ADV) were used to characterize fluid turbulent patterns, while manual particle tracking techniques were used to characterize bed load transport. Octant analysis, conducted using ADV data, coupled with Markovian sequence probability analysis highlights differences in the flow near reattachment versus farther downstream. Near reattachment, three distinct flow patterns are apparent. Farther downstream we see the development of a dominant flow sequence. Localized, intermittent, high-magnitude transport events are more apparent near flow reattachment. These events are composed of streamwise and cross-stream fluxes of comparable magnitudes. Transport pattern and fluid velocity data are consistent with the existence of permeable "splat events," wherein a volume of fluid moves toward and impinges on the bed (sweep) causing a radial movement of fluid in all directions around the point of impingement (outward interaction). This is congruent with flow patterns, identified with octant analysis, proximal to flow reattachment.
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Effects of Shrouded Stator Cavity Flows on Multistage Axial Compressor Aerodynamic Performance
NASA Technical Reports Server (NTRS)
Wellborn, Steven R.; Okiishi, Theodore H.
1996-01-01
Experiments were performed on a low-speed multistage axial-flow compressor to assess the effects of shrouded stator cavity flows on aerodynamic performance. Five configurations, which involved changes in seal-tooth leakage rates and/or elimination of the shrouded stator cavities, were tested. Data collected enabled differences in overall individual stage and the third stage blade element performance parameters to be compared. The results show conclusively that seal-tooth leakage ran have a large impact on compressor aerodynamic performance while the presence of the shrouded stator cavities alone seemed to have little influence. Overall performance data revealed that for every 1% increase in the seal-tooth clearance to blade-height ratio the pressure rise dropped up to 3% while efficiency was reduced by 1 to 1.5 points. These observed efficiency penalty slopes are comparable to those commonly reported for rotor and cantilevered stator tip clearance variations. Therefore, it appears that in order to correctly predict overall performance it is equally important to account for the effects of seal-tooth leakage as it is to include the influence of tip clearance flows. Third stage blade element performance data suggested that the performance degradation observed when leakage was increased was brought about in two distinct ways. First, increasing seal-tooth leakage directly spoiled the near hub performance of the stator row in which leakage occurred. Second, the altered stator exit now conditions caused by increased leakage impaired the performance of the next downstream stage by decreasing the work input of the downstream rotor and increasing total pressure loss of the downstream stator. These trends caused downstream stages to progressively perform worse. Other measurements were acquired to determine spatial and temporal flow field variations within the up-and-downstream shrouded stator cavities. Flow within the cavities involved low momentum fluid traveling primarily in the circumferential direction at about 40% of the hub wheel speed. Measurements indicated that the flow within both cavities was much more complex than first envisioned. A vortical flow structure in the meridional plane, similar to a driven cavity, existed within the upstream cavity Furthermore, other spatial and temporal variations in Row properties existed. the most prominent being caused by the upstream potential influence of the downstream blade. This influence caused the fluid within cavities near the leading edges of either stator blades in space or rotor blades in time to be driven radially inward relative to fluid near blade mid-pitch. This influence also produced large unsteady velocity fluctuations in the downstream cavity because of the passing of the downstream rotor blade.
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Intermittent and ephemeral (IE) streams can provide important functions within stream networks. Understanding the relative benefit provided to downstream waters is needed to better inform watershed management. Although the potential functions of IE streams are relatively well kn...
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Associating putative molecular initiating events (MIE) with downstream cell signaling pathways and modeling fetal exposure kinetics is an important challenge for integration in developmental systems toxicology. Here, we describe an integrative systems toxicology model for develop...
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Ashton, Gabrielle H.; Morton, Jennifer P.; Myant, Kevin; Phesse, Toby J.; Ridgway, Rachel A.; Marsh, Victoria; Wilkins, Julie A.; Athineos, Dimitris; Muncan, Vanesa; Kemp, Richard; Neufeld, Kristi; Clevers, Hans; Brunton, Valerie; Winton, Douglas J.; Wang, Xiaoyan; Sears, Rosalie C.; Clarke, Alan R.; Frame, Margaret C.; Sansom, Owen J.
2012-01-01
SUMMARY The intestinal epithelium has a remarkable capacity to regenerate after injury and DNA damage. Here, we show that the integrin effector protein Focal Adhesion Kinase (FAK) is dispensable for normal intestinal homeostasis and DNA damage signaling, but is essential for intestinal regeneration following DNA damage. Given Wnt/c-Myc signaling is activated following intestinal regeneration, we investigated the functional importance of FAK following deletion of the Apc tumor suppressor protein within the intestinal epithelium. Following Apc loss, FAK expression increased in a c-Myc-dependent manner. Codeletion of Apc and Fak strongly reduced proliferation normally induced following Apc loss, and this was associated with reduced levels of phospho-Akt and suppression of intestinal tumorigenesis in Apc heterozygous mice. Thus, FAK is required downstream of Wnt Signaling, for Akt/mTOR activation, intestinal regeneration, and tumorigenesis. Importantly, this work suggests that FAK inhibitors may suppress tumorigenesis in patients at high risk of developing colorectal cancer. PMID:20708588
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Guanosine triphosphatase activation occurs downstream of calcineurin in cardiac hypertrophy*.
Richardson, Kenneth E; Tannous, Paul; Berenji, Kambeez; Nolan, Bridgid; Bayless, Kayla J; Davis, George E; Rothermel, Beverly A; Hill, Joseph A
2005-12-01
There is great interest in deciphering mechanisms of maladaptive remodeling in cardiac hypertrophy in the hope of affording clinical benefit. Potential targets of therapeutic intervention include the cytoplasmic phosphatase calcineurin and small guanosine triphosphate-binding proteins, such as Rac1 and RhoA, all of which have been implicated in maladaptive hypertrophy. However, little is known about the interaction-if any-between these important signaling molecules in hypertrophic heart disease. In this study, we examined the molecular interplay among these molecules, finding that Rho family guanosine triphosphatase signaling occurs either downstream of calcineurin or as a required, parallel pathway. It has been shown that 3-hydroxy-3-methylglutaryl coenzyme A reductase inhibition blocks hypertrophy, and we report here that "statin" therapy effectively suppresses small G protein activation and blunts hypertrophic growth in vitro and in vivo. Importantly, despite significant suppression of hypertrophy, clinical and hemodynamic markers remained compensated, suggesting that the hypertrophic growth induced by this pathway is not required to maintain circulatory performance.
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Optimization Under Uncertainty for Wake Steering Strategies
DOE Office of Scientific and Technical Information (OSTI.GOV)
Quick, Julian; Annoni, Jennifer; King, Ryan N.
Here, wind turbines in a wind power plant experience significant power losses because of aerodynamic interactions between turbines. One control strategy to reduce these losses is known as 'wake steering,' in which upstream turbines are yawed to direct wakes away from downstream turbines. Previous wake steering research has assumed perfect information, however, there can be significant uncertainty in many aspects of the problem, including wind inflow and various turbine measurements. Uncertainty has significant implications for performance of wake steering strategies. Consequently, the authors formulate and solve an optimization under uncertainty (OUU) problem for finding optimal wake steering strategies in themore » presence of yaw angle uncertainty. The OUU wake steering strategy is demonstrated on a two-turbine test case and on the utility-scale, offshore Princess Amalia Wind Farm. When we accounted for yaw angle uncertainty in the Princess Amalia Wind Farm case, inflow-direction-specific OUU solutions produced between 0% and 1.4% more power than the deterministically optimized steering strategies, resulting in an overall annual average improvement of 0.2%. More importantly, the deterministic optimization is expected to perform worse and with more downside risk than the OUU result when realistic uncertainty is taken into account. Additionally, the OUU solution produces fewer extreme yaw situations than the deterministic solution.« less
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Optimization Under Uncertainty for Wake Steering Strategies: Preprint
DOE Office of Scientific and Technical Information (OSTI.GOV)
Quick, Julian; Annoni, Jennifer; King, Ryan N
Wind turbines in a wind power plant experience significant power losses because of aerodynamic interactions between turbines. One control strategy to reduce these losses is known as 'wake steering,' in which upstream turbines are yawed to direct wakes away from downstream turbines. Previous wake steering research has assumed perfect information, however, there can be significant uncertainty in many aspects of the problem, including wind inflow and various turbine measurements. Uncertainty has significant implications for performance of wake steering strategies. Consequently, the authors formulate and solve an optimization under uncertainty (OUU) problem for finding optimal wake steering strategies in the presencemore » of yaw angle uncertainty. The OUU wake steering strategy is demonstrated on a two-turbine test case and on the utility-scale, offshore Princess Amalia Wind Farm. When we accounted for yaw angle uncertainty in the Princess Amalia Wind Farm case, inflow-direction-specific OUU solutions produced between 0% and 1.4% more power than the deterministically optimized steering strategies, resulting in an overall annual average improvement of 0.2%. More importantly, the deterministic optimization is expected to perform worse and with more downside risk than the OUU result when realistic uncertainty is taken into account. Additionally, the OUU solution produces fewer extreme yaw situations than the deterministic solution.« less
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A dual promoter system regulating λ DNA replication initiation
Olszewski, Paweł; Szambowska, Anna; Barańska, Sylwia; Narajczyk, Magdalena; Węgrzyn, Grzegorz; Glinkowska, Monika
2014-01-01
Transcription and DNA replication are tightly regulated to ensure coordination of gene expression with growth conditions and faithful transmission of genetic material to progeny. A large body of evidence has accumulated, indicating that encounters between protein machineries carrying out DNA and RNA synthesis occur in vivo and may have important regulatory consequences. This feature may be exacerbated in the case of compact genomes, like the one of bacteriophage λ, used in our study. Transcription that starts at the rightward pR promoter and proceeds through the λ origin of replication and downstream of it was proven to stimulate the initiation of λ DNA replication. Here, we demonstrate that the activity of a convergently oriented pO promoter decreases the efficiency of transcription starting from pR. Our results show, however, that a lack of the functional pO promoter negatively influences λ phage and λ-derived plasmid replication. We present data, suggesting that this effect is evoked by the enhanced level of the pR-driven transcription, occurring in the presence of the defective pO, which may result in the impeded formation of the replication initiation complex. Our data suggest that the cross talk between the two promoters regulates λ DNA replication and coordinates transcription and replication processes. PMID:24500197
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Recapitulation of premature ageing with iPSCs from Hutchinson-Gilford progeria syndrome.
Liu, Guang-Hui; Barkho, Basam Z; Ruiz, Sergio; Diep, Dinh; Qu, Jing; Yang, Sheng-Lian; Panopoulos, Athanasia D; Suzuki, Keiichiro; Kurian, Leo; Walsh, Christopher; Thompson, James; Boue, Stephanie; Fung, Ho Lim; Sancho-Martinez, Ignacio; Zhang, Kun; Yates, John; Izpisua Belmonte, Juan Carlos
2011-04-14
Hutchinson-Gilford progeria syndrome (HGPS) is a rare and fatal human premature ageing disease, characterized by premature arteriosclerosis and degeneration of vascular smooth muscle cells (SMCs). HGPS is caused by a single point mutation in the lamin A (LMNA) gene, resulting in the generation of progerin, a truncated splicing mutant of lamin A. Accumulation of progerin leads to various ageing-associated nuclear defects including disorganization of nuclear lamina and loss of heterochromatin. Here we report the generation of induced pluripotent stem cells (iPSCs) from fibroblasts obtained from patients with HGPS. HGPS-iPSCs show absence of progerin, and more importantly, lack the nuclear envelope and epigenetic alterations normally associated with premature ageing. Upon differentiation of HGPS-iPSCs, progerin and its ageing-associated phenotypic consequences are restored. Specifically, directed differentiation of HGPS-iPSCs to SMCs leads to the appearance of premature senescence phenotypes associated with vascular ageing. Additionally, our studies identify DNA-dependent protein kinase catalytic subunit (DNAPKcs, also known as PRKDC) as a downstream target of progerin. The absence of nuclear DNAPK holoenzyme correlates with premature as well as physiological ageing. Because progerin also accumulates during physiological ageing, our results provide an in vitro iPSC-based model to study the pathogenesis of human premature and physiological vascular ageing.
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Alternative splicing at the intersection of biological timing, development, and stress responses.
Staiger, Dorothee; Brown, John W S
2013-10-01
High-throughput sequencing for transcript profiling in plants has revealed that alternative splicing (AS) affects a much higher proportion of the transcriptome than was previously assumed. AS is involved in most plant processes and is particularly prevalent in plants exposed to environmental stress. The identification of mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadian clock, plant defense, and tolerance/sensitivity to abiotic stress all point to a fundamental role of splicing/AS in plant growth, development, and responses to external cues. Splicing factors affect the AS of multiple downstream target genes, thereby transferring signals to alter gene expression via splicing factor/AS networks. The last two to three years have seen an ever-increasing number of examples of functional AS. At a time when the identification of AS in individual genes and at a global level is exploding, this review aims to bring together such examples to illustrate the extent and importance of AS, which are not always obvious from individual publications. It also aims to ensure that plant scientists are aware that AS is likely to occur in the genes that they study and that dynamic changes in AS and its consequences need to be considered routinely.
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FOXP2 gene deletion and infant feeding difficulties: a case report.
Zimmerman, Emily; Maron, Jill L
2016-01-01
Forkhead box protein P2 (FOXP2) is a well-studied gene known to play an essential role in normal speech development. Deletions in the gene have been shown to result in developmental speech disorders and regulatory disruption of downstream gene targets associated with common forms of language impairments. Despite similarities in motor planning and execution between speech development and oral feeding competence, there have been no reports to date linking deletions within the FOXP2 gene to oral feeding impairments in the newborn. The patient was a nondysmorphic, appropriately and symmetrically grown male infant born at 35-wk gestational age. He had a prolonged neonatal intensive care unit stay because of persistent oral feeding incoordination requiring gastrostomy tube placement. Cardiac and neurological imagings were within normal limits. A microarray analysis found an ∼9-kb loss within chromosome band 7q3.1 that contains exon 2 of FOXP2, demonstrating a single copy of this region instead of the normal two copies per diploid gene. This case study expands our current understanding of the role FOXP2 exerts on motor planning and coordination necessary for both oral feeding success and speech-language development. This case report has important consequences for future diagnosis and treatment for infants with FOXP2 deletions, mutations, and varying levels of gene expression.
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Standardization and quality management in next-generation sequencing.
Endrullat, Christoph; Glökler, Jörn; Franke, Philipp; Frohme, Marcus
2016-09-01
DNA sequencing continues to evolve quickly even after > 30 years. Many new platforms suddenly appeared and former established systems have vanished in almost the same manner. Since establishment of next-generation sequencing devices, this progress gains momentum due to the continually growing demand for higher throughput, lower costs and better quality of data. In consequence of this rapid development, standardized procedures and data formats as well as comprehensive quality management considerations are still scarce. Here, we listed and summarized current standardization efforts and quality management initiatives from companies, organizations and societies in form of published studies and ongoing projects. These comprise on the one hand quality documentation issues like technical notes, accreditation checklists and guidelines for validation of sequencing workflows. On the other hand, general standard proposals and quality metrics are developed and applied to the sequencing workflow steps with the main focus on upstream processes. Finally, certain standard developments for downstream pipeline data handling, processing and storage are discussed in brief. These standardization approaches represent a first basis for continuing work in order to prospectively implement next-generation sequencing in important areas such as clinical diagnostics, where reliable results and fast processing is crucial. Additionally, these efforts will exert a decisive influence on traceability and reproducibility of sequence data.
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NASA Astrophysics Data System (ADS)
Angulo, Oscar; Biévre Bert, De
2017-04-01
The vulnerability of water resources under climate change scenarios in Peru is generally regarded to be connected to a diminished availability of water due to retreating glaciers. However, the impact of glacier retreat goes much beyond a decline of glacial water reserves. This article argues that another important impact is the extreme erosion in areas where glaciers have recently melted, as well as the accumulation of erosion material in highland wetlands located downslope. As a direct consequence of these changes highland Andean communities which depend on these ecosystems are affected in socio-economic terms as they find themselves forced to alter ancestral dynamics and traditional practices of land and water use. This quickly leads to a vicious cycle of risks and threats. In such a context a possibility to adapt to glacial retreat should be to protect areas affected by glacial melt in order to enable a rapid development of protective vegetation cover. In the upper catchment of the Cachi River interesting experiences of protection and water harvesting exist that could be extended to other high vulnerability areas for the benefit of highland populations as well as downstream water users, such as the irrigation system of Cachi and the city of Ayacucho.
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A theoretical framework for understanding neuromuscular response to lower extremity joint injury.
Pietrosimone, Brian G; McLeod, Michelle M; Lepley, Adam S
2012-01-01
Neuromuscular alterations are common following lower extremity joint injury and often lead to decreased function and disability. These neuromuscular alterations manifest in inhibition or abnormal facilitation of the uninjured musculature surrounding an injured joint. Unfortunately, these neural alterations are poorly understood, which may affect clinical recognition and treatment of these injuries. Understanding how these neural alterations affect physical function may be important for proper clinical management of lower extremity joint injuries. Pertinent articles focusing on neuromuscular consequences and treatment of knee and ankle injuries were collected from peer-reviewed sources available on the Web of Science and Medline databases from 1975 through 2010. A theoretical model to illustrate potential relationships between neural alterations and clinical impairments was constructed from the current literature. Lower extremity joint injury affects upstream cortical and spinal reflexive excitability pathways as well as downstream muscle function and overall physical performance. Treatment targeting the central nervous system provides an alternate means of treating joint injury that may be effective for patients with neuromuscular alterations. Disability is common following joint injury. There is mounting evidence that alterations in the central nervous system may relate to clinical changes in biomechanics that may predispose patients to further injury, and novel clinical interventions that target neural alterations may improve therapeutic outcomes.
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A Theoretical Framework for Understanding Neuromuscular Response to Lower Extremity Joint Injury
Pietrosimone, Brian G.; McLeod, Michelle M.; Lepley, Adam S.
2012-01-01
Background: Neuromuscular alterations are common following lower extremity joint injury and often lead to decreased function and disability. These neuromuscular alterations manifest in inhibition or abnormal facilitation of the uninjured musculature surrounding an injured joint. Unfortunately, these neural alterations are poorly understood, which may affect clinical recognition and treatment of these injuries. Understanding how these neural alterations affect physical function may be important for proper clinical management of lower extremity joint injuries. Methods: Pertinent articles focusing on neuromuscular consequences and treatment of knee and ankle injuries were collected from peer-reviewed sources available on the Web of Science and Medline databases from 1975 through 2010. A theoretical model to illustrate potential relationships between neural alterations and clinical impairments was constructed from the current literature. Results: Lower extremity joint injury affects upstream cortical and spinal reflexive excitability pathways as well as downstream muscle function and overall physical performance. Treatment targeting the central nervous system provides an alternate means of treating joint injury that may be effective for patients with neuromuscular alterations. Conclusions: Disability is common following joint injury. There is mounting evidence that alterations in the central nervous system may relate to clinical changes in biomechanics that may predispose patients to further injury, and novel clinical interventions that target neural alterations may improve therapeutic outcomes. PMID:23016066
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Analysis of the clonal repertoire of gene-corrected cells in gene therapy.
Paruzynski, Anna; Glimm, Hanno; Schmidt, Manfred; Kalle, Christof von
2012-01-01
Gene therapy-based clinical phase I/II studies using integrating retroviral vectors could successfully treat different monogenetic inherited diseases. However, with increased efficiency of this therapy, severe side effects occurred in various gene therapy trials. In all cases, integration of the vector close to or within a proto-oncogene contributed substantially to the development of the malignancies. Thus, the in-depth analysis of integration site patterns is of high importance to uncover potential clonal outgrowth and to assess the safety of gene transfer vectors and gene therapy protocols. The standard and nonrestrictive linear amplification-mediated PCR (nrLAM-PCR) in combination with high-throughput sequencing exhibits technologies that allow to comprehensively analyze the clonal repertoire of gene-corrected cells and to assess the safety of the used vector system at an early stage on the molecular level. It enables clarifying the biological consequences of the vector system on the fate of the transduced cell. Furthermore, the downstream performance of real-time PCR allows a quantitative estimation of the clonality of individual cells and their clonal progeny. Here, we present a guideline that should allow researchers to perform comprehensive integration site analysis in preclinical and clinical studies. Copyright © 2012 Elsevier Inc. All rights reserved.
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Optimization Under Uncertainty for Wake Steering Strategies
NASA Astrophysics Data System (ADS)
Quick, Julian; Annoni, Jennifer; King, Ryan; Dykes, Katherine; Fleming, Paul; Ning, Andrew
2017-05-01
Wind turbines in a wind power plant experience significant power losses because of aerodynamic interactions between turbines. One control strategy to reduce these losses is known as “wake steering,” in which upstream turbines are yawed to direct wakes away from downstream turbines. Previous wake steering research has assumed perfect information, however, there can be significant uncertainty in many aspects of the problem, including wind inflow and various turbine measurements. Uncertainty has significant implications for performance of wake steering strategies. Consequently, the authors formulate and solve an optimization under uncertainty (OUU) problem for finding optimal wake steering strategies in the presence of yaw angle uncertainty. The OUU wake steering strategy is demonstrated on a two-turbine test case and on the utility-scale, offshore Princess Amalia Wind Farm. When we accounted for yaw angle uncertainty in the Princess Amalia Wind Farm case, inflow-direction-specific OUU solutions produced between 0% and 1.4% more power than the deterministically optimized steering strategies, resulting in an overall annual average improvement of 0.2%. More importantly, the deterministic optimization is expected to perform worse and with more downside risk than the OUU result when realistic uncertainty is taken into account. Additionally, the OUU solution produces fewer extreme yaw situations than the deterministic solution.
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Optimization Under Uncertainty for Wake Steering Strategies
Quick, Julian; Annoni, Jennifer; King, Ryan N.; ...
2017-06-13
Here, wind turbines in a wind power plant experience significant power losses because of aerodynamic interactions between turbines. One control strategy to reduce these losses is known as 'wake steering,' in which upstream turbines are yawed to direct wakes away from downstream turbines. Previous wake steering research has assumed perfect information, however, there can be significant uncertainty in many aspects of the problem, including wind inflow and various turbine measurements. Uncertainty has significant implications for performance of wake steering strategies. Consequently, the authors formulate and solve an optimization under uncertainty (OUU) problem for finding optimal wake steering strategies in themore » presence of yaw angle uncertainty. The OUU wake steering strategy is demonstrated on a two-turbine test case and on the utility-scale, offshore Princess Amalia Wind Farm. When we accounted for yaw angle uncertainty in the Princess Amalia Wind Farm case, inflow-direction-specific OUU solutions produced between 0% and 1.4% more power than the deterministically optimized steering strategies, resulting in an overall annual average improvement of 0.2%. More importantly, the deterministic optimization is expected to perform worse and with more downside risk than the OUU result when realistic uncertainty is taken into account. Additionally, the OUU solution produces fewer extreme yaw situations than the deterministic solution.« less
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NASA Astrophysics Data System (ADS)
Dafny, Elad; Tawfeeq, Kochar Jamal; Ghabraie, Kazem
2015-10-01
Dam sites provide an outstanding opportunity to explore dynamic changes in the groundwater flow regime because of the high hydraulic gradient rapidly induced in their surroundings. This paper investigates the temporal changes of the hydraulic conductivities of the rocks and engineered structures via a thorough analysis of hydrological data collected at the Dokam Dam, Iraq, and a numerical model that simulates the Darcian component of the seepage. Analysis of the data indicates increased seepage with time and suggests that the hydraulic conductivity of the rocks increased as the conductivity of the grout curtain decreased. Conductivity changes on the order of 10-8 m/s, in a 20-yr period were quantified using the numerical analysis. It is postulated that the changes in hydraulic properties in the vicinity of Dokan Dam are due to suspension of fine materials, interbedded in small fissures in the rocks, and re-settlement of these materials along the curtain. Consequently, the importance of the grout curtain to minimize the downstream seepage, not only as a result of the conductivity contrast with the rocks, but also as a barrier to suspended clay sediments, is demonstrated. The numerical analysis also helped us to estimate the proportion of the disconnected karstic conduit flow to the overall flow.
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Staiger, Dorothee; Brown, John W.S.
2013-01-01
High-throughput sequencing for transcript profiling in plants has revealed that alternative splicing (AS) affects a much higher proportion of the transcriptome than was previously assumed. AS is involved in most plant processes and is particularly prevalent in plants exposed to environmental stress. The identification of mutations in predicted splicing factors and spliceosomal proteins that affect cell fate, the circadian clock, plant defense, and tolerance/sensitivity to abiotic stress all point to a fundamental role of splicing/AS in plant growth, development, and responses to external cues. Splicing factors affect the AS of multiple downstream target genes, thereby transferring signals to alter gene expression via splicing factor/AS networks. The last two to three years have seen an ever-increasing number of examples of functional AS. At a time when the identification of AS in individual genes and at a global level is exploding, this review aims to bring together such examples to illustrate the extent and importance of AS, which are not always obvious from individual publications. It also aims to ensure that plant scientists are aware that AS is likely to occur in the genes that they study and that dynamic changes in AS and its consequences need to be considered routinely. PMID:24179132
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Ahuja, Suchit; Dogra, Deepika; Stainier, Didier Y R; Reischauer, Sven
2016-04-01
The atrioventricular canal (AVC) connects the atrial and ventricular chambers of the heart and its formation is critical for the development of the cardiac valves, chamber septation and formation of the cardiac conduction system. Consequently, problems in AVC formation can lead to congenital defects ranging from cardiac arrhythmia to incomplete cardiac septation. While our knowledge about early heart tube formation is relatively comprehensive, much remains to be investigated about the genes that regulate AVC formation. Here we identify a new role for the basic helix-loop-helix factor Id4 in zebrafish AVC valve development and function. id4 is first expressed in the AVC endocardium and later becomes more highly expressed in the atrial chamber. TALEN induced inactivation of id4 causes retrograde blood flow at the AV canal under heat induced stress conditions, indicating defects in AV valve function. At the molecular level, we found that id4 inactivation causes misexpression of several genes important for AVC and AV valve formation including bmp4 and spp1. We further show that id4 appears to control the number of endocardial cells that contribute to the AV valves by regulating Wnt signaling in the developing AVC endocardium. Copyright © 2016 Elsevier Inc. All rights reserved.
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Diabetes-Induced Reactive Oxygen Species: Mechanism of Their Generation and Role in Renal Injury
Fakhruddin, Selim; Alanazi, Wael
2017-01-01
Diabetes induces the onset and progression of renal injury through causing hemodynamic dysregulation along with abnormal morphological and functional nephron changes. The most important event that precedes renal injury is an increase in permeability of plasma proteins such as albumin through a damaged glomerular filtration barrier resulting in excessive urinary albumin excretion (UAE). Moreover, once enhanced UAE begins, it may advance renal injury from progression of abnormal renal hemodynamics, increased glomerular basement membrane (GBM) thickness, mesangial expansion, extracellular matrix accumulation, and glomerulosclerosis to eventual end-stage renal damage. Interestingly, all these pathological changes are predominantly driven by diabetes-induced reactive oxygen species (ROS) and abnormal downstream signaling molecules. In diabetic kidney, NADPH oxidase (enzymatic) and mitochondrial electron transport chain (nonenzymatic) are the prominent sources of ROS, which are believed to cause the onset of albuminuria followed by progression to renal damage through podocyte depletion. Chronic hyperglycemia and consequent ROS production can trigger abnormal signaling pathways involving diverse signaling mediators such as transcription factors, inflammatory cytokines, chemokines, and vasoactive substances. Persistently, increased expression and activation of these signaling molecules contribute to the irreversible functional and structural changes in the kidney resulting in critically decreased glomerular filtration rate leading to eventual renal failure. PMID:28164134
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NASA Astrophysics Data System (ADS)
Tétard, Stéphane; Feunteun, Eric; Bultel, Elise; Gadais, Romain; Bégout, Marie-Laure; Trancart, Thomas; Lasne, Emilien
2016-02-01
Connectivity in aquatic systems is often related to abundance and permeability of physical barriers, such as dams, which delay or impede movements of biota with important consequences for aquatic biodiversity. Water quality may, however, also control connectivity between essential habitats. In macrotidal estuaries, Estuarine Turbidity Maxima (ETM) have a strong impact on water quality because of the low oxygen concentration occurring as a response to the related high bacterial and low photosynthetic activities. In this study, we assess Allis shad estuarine spawning migration in 2011 and 2012 in the Loire River (France) where the ETM occurs at spring and summer. Using an acoustic telemetry array, we show that trans-estuarine migration is inhibited during hypoxic episodes in the middle part of the estuary. Shad tends to stay in downstream areas, and even at sea, where oxygen conditions are more suitable. Trans-estuarine migration occurs hastily during neap tide when the ETM decreases, both in terms of spatial extent and intensity, inducing a shift in a set of covariates including dissolved oxygen, which increases, and suspended matter, which decreases. In the context of climate warming, ETM are expected to increase with probable adverse implications for shad migration success and doubtless other diadromous populations.
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Runoff projection under climate change over Yarlung Zangbo River, Southwest China
NASA Astrophysics Data System (ADS)
Xuan, Weidong; Xu, Yue-Ping
2017-04-01
The Yarlung Zangbo River is located in southwest of China, one of the major source of "Asian water tower". The river has great hydropower potential and provides vital water resource for local and downstream agricultural production and livestock husbandry. Compared to its drainage area, gauge observation is sometimes not enough for good hydrological modeling in order to project future runoff. In this study, we employ a semi-distributed hydrologic model SWAT to simulate hydrological process of the river with rainfall observation and TRMM 3B4V7 respectively and the hydrological model performance is evaluated based on not only total runoff but snowmelt, precipitation and groundwater components. Firstly, calibration and validation of the hydrological model are executed to find behavioral parameter sets for both gauge observation and TRMM data respectively. Then, behavioral parameter sets with diverse efficiency coefficient (NS) values are selected and corresponding runoff components are analyzed. Robust parameter sets are further employed in SWAT coupled with CMIP5 GCMs to project future runoff. The final results show that precipitation is the dominating contributor nearly all year around, while snowmelt and groundwater are important in the summer and winter alternatively. Also sufficient robust parameter sets help reduce uncertainty in hydrological modeling. Finally, future possible runoff changes will have major consequences for water and flood security.
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Evaluation of helicity generation in the tropical storm Gonu
NASA Astrophysics Data System (ADS)
Farahani, Majid M.; Khansalari, Sakineh; Azadi, Majid
2017-06-01
Helicity is a valuable dynamical concept for the study of rotating flows. Consequently helicity flux, indicative of the source or sink of helicity, owns comparable importance. In this study, while reviewing the existing methods, a mathematical relation between helicity and helicity-flux is introduced, discussed and examined. The computed values of helicity and helicity fluxes in an actual case, using the classical and this proposed method are compared. The down-stream helicity flux including sources and sinks of helicity is considered for the tropical storm Gonu that occurred over the coasts of Oman and Iran on June 2-7, 2007. Results show that the buoyancy, through the upper troposphere down to a height within boundary layer, is the main source in producing helicity, and surface friction from earth surface up to a height within boundary layer, is the main dissipating element of helicity. The dominance of buoyancy forcing over the dissipative friction forcing results in generation of vortex or enhancement of it after bouncing the land. Furthermore, the increase (decrease) of helicity results in an increase (decrease) in the height of the level in which maximum helicity flux occurs. It is suggested that the maximum helicity flux occurs at the top of the turbulent boundary layer, so that the height of boundary layer could be obtained.
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Liu, Liping; Guan, Hongyu; Li, Yun; Ying, Zhe; Wu, Jueheng; Zhu, Xun; Song, Libing
2016-01-01
ABSTRACT Astrocyte elevated gene 1 (AEG-1) is an oncoprotein that strongly promotes the development and progression of cancers. However, the detailed underlying mechanisms through which AEG-1 enhances tumor development and progression remain to be determined. In this study, we identified c-Jun and p300 to be novel interacting partners of AEG-1 in gliomas. AEG-1 promoted c-Jun transcriptional activity by interacting with the c-Jun/p300 complex and inducing c-Jun acetylation. Furthermore, the AEG-1/c-Jun/p300 complex was found to bind the promoter of c-Jun downstream targeted genes, consequently establishing an acetylated chromatin state that favors transcriptional activation. Importantly, AEG-1/p300-mediated c-Jun acetylation resulted in the development of a more aggressive malignant phenotype in gliomas through a drastic increase in glioma cell proliferation and angiogenesis in vitro and in vivo. Consistently, the AEG-1 expression levels in clinical glioma specimens correlated with the status of c-Jun activation. Taken together, our results suggest that AEG-1 mediates a novel epigenetic mechanism that enhances c-Jun transcriptional activity to induce glioma progression and that AEG-1 might be a novel, potential target for the treatment of gliomas. PMID:27956703
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Schweiger, R; Heise, A-M; Persicke, M; Müller, C
2014-07-01
The phytohormones jasmonic acid (JA) and salicylic acid (SA) mediate induced plant defences and the corresponding pathways interact in a complex manner as has been shown on the transcript and proteine level. Downstream, metabolic changes are important for plant-herbivore interactions. This study investigated metabolic changes in leaf tissue and phloem exudates of Plantago lanceolata after single and combined JA and SA applications as well as consequences on chewing-biting (Heliothis virescens) and piercing-sucking (Myzus persicae) herbivores. Targeted metabolite profiling and untargeted metabolic fingerprinting uncovered different categories of plant metabolites, which were influenced in a specific manner, indicating points of divergence, convergence, positive crosstalk and pronounced mutual antagonism between the signaling pathways. Phytohormone-specific decreases of primary metabolite pool sizes in the phloem exudates may indicate shifts in sink-source relations, resource allocation, nutrient uptake or photosynthesis. Survival of both herbivore species was significantly reduced by JA and SA treatments. However, the combined application of JA and SA attenuated the negative effects at least against H. virescens suggesting that mutual antagonism between the JA and SA pathway may be responsible. Pathway interactions provide a great regulatory potential for the plant that allows triggering of appropriate defences when attacked by different antagonist species. © 2013 John Wiley & Sons Ltd.
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Choices of capture chromatography technology in antibody manufacturing processes.
DiLeo, Michael; Ley, Arthur; Nixon, Andrew E; Chen, Jie
2017-11-15
The capture process employed in monoclonal antibody downstream purification is not only the most critically impacted process by increased antibody titer resulting from optimized mammalian cell culture expression systems, but also the most important purification step in determining overall process throughput, product quality, and economics. Advances in separation technology for capturing antibodies from complex feedstocks have been one focus of downstream purification process innovation for past 10 years. In this study, we evaluated new generation chromatography resins used in the antibody capture process including Protein A, cation exchange, and mixed mode chromatography to address the benefits and unique challenges posed by each chromatography approach. Our results demonstrate the benefit of improved binding capacity of new generation Protein A resins, address the concern of high concentration surge caused aggregation when using new generation cation exchange resins with over 100mg/mL binding capacity, and highlight the potential of multimodal cation exchange resins for capture process design. The new landscape of capture chromatography technologies provides options to achieve overall downstream purification outcome with high product quality and process efficiency. Copyright © 2017 Elsevier B.V. All rights reserved.
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Monitoring strategies associated with the controlled drawdown of a hydropower reservoir
NASA Astrophysics Data System (ADS)
Hauer, Christoph; Haimann, Marlene; Habersack, Helmut; Haun, Stefan; Hammer, Andreas; Schletterer, Martin
2017-04-01
Reservoirs are important in context of an increased demand on renewable energy and water for irrigation and drinking water purposes. Thus reservoir management is an important task. Beside the technical and the economically feasibility ecological factors are important issues. Thus, an integrative monitoring concept was developed and applied during a controlled drawdown of the Gepatsch reservoir in the Austrian Alps.The controlled drawdown (December 2015 - March 2016) was done slowly, with the consequence of moderatesuspended sediment concentrations (SSCs) in the downstream Inn river. The water was released through the penstock towards the turbines and directly into the Inn River. However, to limit the erosional impact on turbines only one Twin-Pelton turbines was operated during the controlled drawdown. The monitoring program itself was subdivided into monitoring of the sediments in the penstock to determine the amount and the composition of sediments which were sluiced through the turbine, monitoring of the turbine itself to quantify the damages of the turbine and a monitoring related to SSCs in the downstream river reach. In order to detect possible changes, measured discharge and turbidity values were examined. In addition, the flow velocity was modelled (1D). The goal was to monitor the observed peaks concerning their temporal shift and to draw conclusions on the storage capacity of fine sediments in the river substrate. Moreover, detailed fine sediment depositions on gravel bars along the Inn river were monitored and the grain size distribution of the river bed was determined. The monitoring started already in April / November 2015 with the aim to survey and analyses the turbidity, suspended load and fine sediment deposits on gravel bars along the River Inn as well as its biota (macroinvertebrates and fish) for "undisturbed" conditions. The SSCs were measured in a pre-analysis and during the drawdown itself in the penstock and in the outlet channel with turbidity meters, a LISST-StreamSide and a Coriolis Flow Density Meter. In addition gravimetric samples were collected on a daily basis, where subsequently the SSC and the particle size distribution were quantified in the laboratory. The material erosion of the Pelton runner, which was used during the drawdown, was measured in equal intervals to obtain a relationship between the turbine damage and the suspended sediment emission on the turbine. Concerning the studies on fine sediment deposits on gravel bars only four gravel bars showed statistically significant changes comparing the surface deposits before and after the controlled drawdown. Therefore the assumption that an increase in deposited sediments is coupled with a high rate of turbidity did not appear. The changes in river bed composition by freeze-cores delivered additional information on the fine sediment dynamics. High turbidity values resulted in a higher share of fine particles in the vertical stratigraphy especially at the first sampling sites downstream of the power plant. The same effect was monitored concerning an increase of overlaying sediments on the gravel bars. The developed integrative monitoring concept for the controlled drawdown of the Gepatsch reservoir, including continuous and periodical measurements, was a novel reach-scale approach to integrate hydrology, erosional aspects of sediments on turbines, fine sediment transport dynamics and variability in the river, and determination of ecological impacts.
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Effects of floods on fish assemblages in an intermittent prairie stream
Franssen, N.R.; Gido, K.B.; Guy, C.S.; Tripe, J.A.; Shrank, S.J.; Strakosh, T.R.; Bertrand, K.N.; Franssen, C.M.; Pitts, K.L.; Paukert, C.P.
2006-01-01
1. Floods are major disturbances to stream ecosystems that can kill or displace organisms and modify habitats. Many studies have reported changes in fish assemblages after a single flood, but few studies have evaluated the importance of timing and intensity of floods on long-term fish assemblage dynamics. 2. We used a 10-year dataset to evaluate the effects of floods on fishes in Kings Creek, an intermittent prairie stream in north-eastern, Kansas, U.S.A. Samples were collected seasonally at two perennial headwater sites (1995-2005) and one perennial downstream flowing site (1997-2005) allowing us to evaluate the effects of floods at different locations within a watershed. In addition, four surveys during 2003 and 2004 sampled 3-5 km of stream between the long-term study sites to evaluate the use of intermittent reaches of this stream. 3. Because of higher discharge and bed scouring at the downstream site, we predicted that the fish assemblage would have lowered species richness and abundance following floods. In contrast, we expected increased species richness and abundance at headwater sites because floods increase stream connectivity and create the potential for colonisation from downstream reaches. 4. Akaike Information Criteria (AIC) was used to select among candidate regression models that predicted species richness and abundance based on Julian date, time since floods, season and physical habitat at each site. At the downstream site, AIC weightings suggested Julian date was the best predictor of fish assemblage structure, but no model explained >16% of the variation in species richness or community structure. Variation explained by Julian date was primarily attributed to a long-term pattern of declining abundance of common species. At the headwater sites, there was not a single candidate model selected to predict total species abundance and assemblage structure. AIC weightings suggested variation in assemblage structure was associated with either Julian date or local habitat characteristics. 5. Fishes rapidly colonised isolated or dry habitats following floods. This was evidenced by the occurrence of fishes in intermittent reaches and the positive association between maximum daily discharge and colonisation events at both headwater sites. 6. Our study suggests floods allow dispersal into intermittent habitats with little or no downstream displacement of fishes. Movement of fishes among habitats during flooding highlights the importance of maintaining connectivity of stream networks of low to medium order prairie streams. ?? 2006 The Authors.
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Beauchamp, Elspeth M.; Kosciuczuk, Ewa M.; Serrano, Ruth; Nanavati, Dhaval; Swindell, Elden P.; Viollet, Benoit; O'Halloran, Thomas V.; Altman, Jessica K.; Platanias, Leonidas C.
2014-01-01
Arsenic trioxide (As2O3) exhibits potent antineoplastic effects and is used extensively in clinical oncology for the treatment of a subset of patients with acute myeloid leukemia (AML). Although As2O3 is known to regulate activation of several signaling cascades, the key events, accounting for its anti-leukemic properties, remain to be defined. We provide evidence that arsenic can directly bind to cysteine 299 in AMPKα and inhibit its activity. This inhibition of AMPK by arsenic is required in part for its cytotoxic effects on primitive leukemic progenitors from patients with AML, while concomitant treatment with an AMPK activator antagonizes in vivo the arsenic-induced antileukemic effects in a xenograft AML mouse model. A consequence of AMPK inhibition is activation of the mTOR pathway as a negative regulatory feedback loop. However, when AMPK expression is lost, arsenic-dependent activation of the kinase RSK downstream of MAPK activity compensates the generation of regulatory feedback signals through phosphorylation of downstream mTOR targets. Thus, therapeutic regimens with arsenic trioxide will need to include inhibitors of both the mTOR and RSK pathways in combination to prevent engagement of negative feedback loops and maximize antineoplastic responses. PMID:25344585
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Development of the infant intestinal microbiome: A bird's eye view of a complex process.
Meropol, Sharon B; Edwards, Amy
2015-12-01
Infants undergo profound shifts in colonizing intestinal microorganisms during their first year, especially during and after birth and during weaning. Microbiota are passed to infants through the placenta, during the vaginal birth process, and from early diet and other environmental exposures. These microbiota play an active role in the development of healthy infant metabolic and immunologic systems; profound shifts in microbiotal populations can be persistent, are associated with immediate alterations in gene expression, metabolic, immunologic, and neurologic function, and with downstream metabolic and immunologic consequences such as obesity, allergies, asthma, autoimmune diseases, and potentially neurologic conditions. Many modern exposures, including Cesarean section, formula feeding, and antibiotics, have been associated with microbiome shifts, and also with downstream diseases; while many published studies considered exposures individually, a more comprehensive understanding of their interaction and impact will consider the entirety of the infant's environment. It is not possible, nor desirable, to return to a world without toilets, sewers, tap water, delivery room antisepsis, Cesarean sections, antibiotics, immunizations, and refrigerators; our other alternative is to better understand these complex changes in infant developmental and molecular physiology. Protecting and repairing the developmental processes of the healthy infant microbiome is the modern medical frontier. © 2015 Wiley Periodicals, Inc.
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NASA Astrophysics Data System (ADS)
Barakat, Mohammed; Lengsfeld, Corinne; Dvir, Danny; Azadani, Ali
2017-11-01
Transcatheter aortic valves provide superior systolic hemodynamic performance in terms of valvular pressure gradient and effective orifice area compared with equivalent size surgical bioprostheses. However, in depth investigation of the flow field structures is of interest to examine the flow field characteristics and provide experimental evidence necessary for validation of computational models. The goal of this study was to compare flow field characteristics of the three most commonly used transcatheter and surgical valves using phase-locked particle image velocimetry (PIV). 26mm SAPIEN 3, 26mm CoreValve, and 25mm PERIMOUNT Magna were examined in a pulse duplicator with input parameters matching ISO-5840. A 2D PIV system was used to obtain the velocity fields. Flow velocity and shear stress were obtained during the entire cardiac cycle. In-vitro testing showed that mean gradient was lowest for SAPIEN 3, followed by CoreValve and PERIMOUNT Magna. In all the valves, the peak jet velocity and maximum viscous shear stress were 2 m/s and 2 MPa, respectively. In conclusion, PIV was used to investigate flow field downstream of the three bioprostheses. Viscous shear stress was low and consequently shear-induced thrombotic trauma or shear-induced damage to red blood cells is unlikely.
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The potential for dams to impact lowland meandering river floodplain geomorphology.
Marren, Philip M; Grove, James R; Webb, J Angus; Stewardson, Michael J
2014-01-01
The majority of the world's floodplains are dammed. Although some implications of dams for riverine ecology and for river channel morphology are well understood, there is less research on the impacts of dams on floodplain geomorphology. We review studies from dammed and undammed rivers and include influences on vertical and lateral accretion, meander migration and cutoff formation, avulsion, and interactions with floodplain vegetation. The results are synthesized into a conceptual model of the effects of dams on the major geomorphic influences on floodplain development. This model is used to assess the likely consequences of eight dam and flow regulation scenarios for floodplain geomorphology. Sediment starvation downstream of dams has perhaps the greatest potential to impact on floodplain development. Such effects will persist further downstream where tributary sediment inputs are relatively low and there is minimal buffering by alluvial sediment stores. We can identify several ways in which floodplains might potentially be affected by dams, with varying degrees of confidence, including a distinction between passive impacts (floodplain disconnection) and active impacts (changes in geomorphological processes and functioning). These active processes are likely to have more serious implications for floodplain function and emphasize both the need for future research and the need for an "environmental sediment regime" to operate alongside environmental flows.
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The North Atlantic Waveguide and Downstream Impact Experiment (NAWDEX): First results
NASA Astrophysics Data System (ADS)
Craig, George; Schäfler, Andreas; Ament, Felix; Arbogast, Philippe; Crewell, Susanne; Doyle, James; Hirsch, Lutz; Mayer, Bernhard; McTaggart-Cowan, Ron; Methven, John; Rahm, Stephan; Rautenhaus, Marc; Reitebuch, Oliver; Rivière, Gwendal; Vaughan, Geraint; Wendisch, Manfred; Wernli, Heini; Wirth, Martin; Witschas, Benjamin
2017-04-01
First results will be presented from the NAWDEX experiment, an international field campaign with the overall goal of increasing the physical understanding and quantifying the effects of diabatic processes on disturbances to the jet stream over the North Atlantic, their influence on downstream propagation, and consequences for high-impact weather in Europe. The campaign took place from 19 September to 18 October 2016, and deployed a variety of remote-sensing and in-situ instruments that provided an extraordinarily detailed picture of the interacting dynamics and thermodynamics. Thirteen intensive observation periods took place over the course of the campaign, including moisture inflow and diabatic processes in warm conveyor belts, cloud and dynamical structure in outflow and ridge-building events, as well as other events This presentation will briefly review the weather events that were observed during NAWDEX and give a preliminary evaluation of how the observations contribute to new understanding of midlatitude weather systems. As an example, an analysis of the structure and evolution of ex-Tropical Storm Karl will be presented. This system was observed by a sequence of aircraft flights over a period of six days, as it moved from the subtropics into the midlatitudes off the coast of North America, reintensified explosively as a midlatitude cyclone south of Greenland, and eventually contributed to poor precipitation forecasts for Norway.
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Carta, Sonia; Tassi, Sara; Delfino, Laura; Omenetti, Alessia; Raffa, Salvatore; Torrisi, Maria Rosaria; Martini, Alberto; Gattorno, Marco; Rubartelli, Anna
2012-09-01
To determine whether dysregulated production of cytokines downstream of interleukin (IL)-1 participates in the pathophysiology of cryopyrin-associated periodic syndromes (CAPS). Primary monocytes from patients with CAPS, unstimulated or after stimulation with lipopolysaccharide (LPS) and other Toll-like receptor (TLR) agonists, were examined for signs of stress and production of IL-1β, IL-1 receptor antagonist (IL-1Ra) and IL-6 in comparison with monocytes from patients with autoimmune diseases and from healthy donors. Unstimulated CAPS monocytes showed mild signs of stress including elevated levels of reactive oxygen species and fragmented mitochondria. Stress signs were worsened by TLR stimulation and eventually led to protein synthesis inhibition with strong impairment of production of cytokines downstream of IL-1, such as IL-1Ra and IL-6. These defects were not detected in monocytes from autoimmune patients and healthy donors. The stress state of LPS-stimulated CAPS monocytes and the consequent inhibition of translation are likely to be responsible for the impaired production of IL-1Ra and IL-6. The deficient secretion of these cytokines coupled with increased IL-1β release explains the severity of the IL-1-related clinical manifestations and the predominant implication of innate immunity in CAPS.
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Cytotoxic 1-deoxysphingolipids are metabolized by a cytochrome P450-dependent pathway[S
Alecu, Irina; Othman, Alaa; Penno, Anke; Saied, Essa M.; Arenz, Christoph; von Eckardstein, Arnold; Hornemann, Thorsten
2017-01-01
The 1-deoxysphingolipids (1-deoxySLs) are atypical sphingolipids (SLs) that are formed when serine palmitoyltransferase condenses palmitoyl-CoA with alanine instead of serine during SL synthesis. The 1-deoxySLs are toxic to neurons and pancreatic β-cells. Pathologically elevated 1-deoxySLs cause the inherited neuropathy, hereditary sensory autonomic neuropathy type 1 (HSAN1), and are also found in T2D. Diabetic sensory polyneuropathy (DSN) and HSAN1 are clinically very similar, suggesting that 1-deoxySLs may be implicated in both pathologies. The 1-deoxySLs are considered to be dead-end metabolites, as they lack the C1-hydroxyl group, which is essential for the canonical degradation of SLs. Here, we report a previously unknown metabolic pathway, which is capable of degrading 1-deoxySLs. Using a variety of metabolic labeling approaches and high-resolution high-accuracy MS, we identified eight 1-deoxySL downstream metabolites, which appear to be formed by cytochrome P450 (CYP)4F enzymes. Comprehensive inhibition and induction of CYP4F enzymes blocked and stimulated, respectively, the formation of the downstream metabolites. Consequently, CYP4F enzymes might be novel therapeutic targets for the treatment of HSAN1 and DSN, as well as for the prevention of T2D. PMID:27872144
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The Potential for Dams to Impact Lowland Meandering River Floodplain Geomorphology
Marren, Philip M.; Grove, James R.; Webb, J. Angus; Stewardson, Michael J.
2014-01-01
The majority of the world's floodplains are dammed. Although some implications of dams for riverine ecology and for river channel morphology are well understood, there is less research on the impacts of dams on floodplain geomorphology. We review studies from dammed and undammed rivers and include influences on vertical and lateral accretion, meander migration and cutoff formation, avulsion, and interactions with floodplain vegetation. The results are synthesized into a conceptual model of the effects of dams on the major geomorphic influences on floodplain development. This model is used to assess the likely consequences of eight dam and flow regulation scenarios for floodplain geomorphology. Sediment starvation downstream of dams has perhaps the greatest potential to impact on floodplain development. Such effects will persist further downstream where tributary sediment inputs are relatively low and there is minimal buffering by alluvial sediment stores. We can identify several ways in which floodplains might potentially be affected by dams, with varying degrees of confidence, including a distinction between passive impacts (floodplain disconnection) and active impacts (changes in geomorphological processes and functioning). These active processes are likely to have more serious implications for floodplain function and emphasize both the need for future research and the need for an “environmental sediment regime” to operate alongside environmental flows. PMID:24587718
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T cells are influenced by a long non-coding RNA in the autoimmune associated PTPN2 locus.
Houtman, Miranda; Shchetynsky, Klementy; Chemin, Karine; Hensvold, Aase Haj; Ramsköld, Daniel; Tandre, Karolina; Eloranta, Maija-Leena; Rönnblom, Lars; Uebe, Steffen; Catrina, Anca Irinel; Malmström, Vivianne; Padyukov, Leonid
2018-06-01
Non-coding SNPs in the protein tyrosine phosphatase non-receptor type 2 (PTPN2) locus have been linked with several autoimmune diseases, including rheumatoid arthritis, type I diabetes, and inflammatory bowel disease. However, the functional consequences of these SNPs are poorly characterized. Herein, we show in blood cells that SNPs in the PTPN2 locus are highly correlated with DNA methylation levels at four CpG sites downstream of PTPN2 and expression levels of the long non-coding RNA (lncRNA) LINC01882 downstream of these CpG sites. We observed that LINC01882 is mainly expressed in T cells and that anti-CD3/CD28 activated naïve CD4 + T cells downregulate the expression of LINC01882. RNA sequencing analysis of LINC01882 knockdown in Jurkat T cells, using a combination of antisense oligonucleotides and RNA interference, revealed the upregulation of the transcription factor ZEB1 and kinase MAP2K4, both involved in IL-2 regulation. Overall, our data suggests the involvement of LINC01882 in T cell activation and hints towards an auxiliary role of these non-coding SNPs in autoimmunity associated with the PTPN2 locus. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.
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Loersch, Chris; Payne, B Keith
2011-05-01
The downstream consequences of a priming induction range from changes in the perception of objects in the environment to the initiation of prime-related behavior and goal striving. Although each of these outcomes has been accounted for by separate mechanisms, we argue that a single process could produce all three priming effects. In this article, we introduce the situated inference model of priming, discuss its potential to account for these divergent outcomes with one mechanism, and demonstrate its ability to organize the priming literatures surrounding these effects. According to the model, primes often do not cause direct effects, instead altering only the accessibility of prime-related mental content. This information produces downstream effects on judgment, behavior, or motivation when it is mistakenly viewed as originating from one's own internal thought processes. When this misattribution occurs, the prime-related mental content becomes a possible source of information for solving whatever problems are afforded by the current situation. Because different situations afford very different questions and concerns, the inferred meaning of this prime-related content can vary greatly. The use of this information to answer qualitatively different questions can lead a single prime to produce varied effects on judgment, behavior, and motivation. © The Author(s) 2011.
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Efficient and Rapid Isolation of Early-stage Embryos from Arabidopsis thaliana Seeds
Raissig, Michael T.; Gagliardini, Valeria; Jaenisch, Johan; Grossniklaus, Ueli; Baroux, Célia
2013-01-01
In flowering plants, the embryo develops within a nourishing tissue - the endosperm - surrounded by the maternal seed integuments (or seed coat). As a consequence, the isolation of plant embryos at early stages (1 cell to globular stage) is technically challenging due to their relative inaccessibility. Efficient manual dissection at early stages is strongly impaired by the small size of young Arabidopsis seeds and the adhesiveness of the embryo to the surrounding tissues. Here, we describe a method that allows the efficient isolation of young Arabidopsis embryos, yielding up to 40 embryos in 1 hr to 4 hr, depending on the downstream application. Embryos are released into isolation buffer by slightly crushing 250-750 seeds with a plastic pestle in an Eppendorf tube. A glass microcapillary attached to either a standard laboratory pipette (via a rubber tube) or a hydraulically controlled microinjector is used to collect embryos from droplets placed on a multi-well slide on an inverted light microscope. The technical skills required are simple and easily transferable, and the basic setup does not require costly equipment. Collected embryos are suitable for a variety of downstream applications such as RT-PCR, RNA sequencing, DNA methylation analyses, fluorescence in situ hybridization (FISH), immunostaining, and reporter gene assays. PMID:23770918
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Liu, Chang; Ren, Yi-Fan; Dong, Jian; Ke, Meng-Yun; Ma, Feng; Monga, Satdarshan P S; Wu, Rongqian; Lv, Yi; Zhang, Xu-Feng
2017-12-01
Sex affects the risk, treatment responses and outcome of many types of cancers. The mechanism of gender disparity in development of hepatocellular carcinoma (HCC) remains obscure. Sex-determining region on Y chromosome (SRY) was overexpressed in approximate 84% male patient HCC. Moreover, we are the first to generate a liver-specific transgenic (TG) murine model with overexpression of the male specific gene SRY. Subject to a single intraperitoneal injection N-nitrosodiethylamine (DEN) at day 14, TG and wildtype (WT) mice of both genders were sacrificed at different time points (6-13.5 months). Overexpression of SRY in male TG and ectopic expression of SRY in female TG livers promoted DEN-induced hepatocarcinogenesis compared to age- and sex-matched WT. This accelerated tumorigenesis in TG of both genders was a consequence of increased injury and inflammation, fibrosis, and compensatory enhancement in hepatocytes proliferation secondary to activation of downstream targets Sox9 and platelet-derived growth factor receptor α (PDGFRα)/phosphoinositide 3-kinase (PI3K)/Akt and c-myc/CyclinD1. In conclusion, activation of SRY and its downstream Sox9 and PDGFRα pathways are commonly involved in male hepatocarcinogenesis, which provides novel insights into gender disparity and sex-specific therapeutic strategies of HCC. Copyright © 2017 Elsevier B.V. All rights reserved.
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Meszaros, Nicholas; Subedi, Bikram; Stamets, Tristan; Shifa, Naima
2017-09-01
There is a growing concern over the contamination of surface water and the associated environmental and public health consequences from the recent proliferation of hydraulic fracturing in the USA. Petroleum hydrocarbon-derived contaminants of concern [benzene, toluene, ethylbenzene, and xylenes (BTEX)] and various dissolved cations and anions were spatially determined in surface waters around 15 coalbed methane fracking wells in Sullivan County, IN, USA. At least one BTEX compound was detected in 69% of sampling sites (n = 13) and 23% of sampling sites were found to be contaminated with all of the BTEX compounds. Toluene was the most common BTEX compound detected across all sampling sites, both upstream and downstream from coalbed methane fracking wells. The average concentration of toluene at a reservoir and its outlet nearby the fracking wells was ~2× higher than other downstream sites. However, one of the upstream sites was found to be contaminated with BTEX at similar concentrations as in a reservoir site nearby the fracking well. Calcium (~60 ppm) and sulfates (~175 ppm) were the dominant cations and anions, respectively, in surface water around the fracking sites. This study represents the first report of BTEX contamination in surface water from coalbed methane hydraulic fracturing wells.
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Organic carbon export from the Greenland Ice Sheet: sources, sinks and downstream fluxes
NASA Astrophysics Data System (ADS)
Wadham, J. L.; Lawson, E.; Tranter, M.; Stibal, M.; Telling, J.; Lis, G. P.; Nienow, P. W.; Anesio, A. M.; Butler, C. E.
2012-12-01
Runoff from small glacier systems has been shown to contain dissolved organic carbon (DOC) rich in low molecular weight (LMW), and hence more labile forms, designating glaciers as an important source of carbon for downstream heterotrophic activity. Here we assess glacier surfaces as potential sources of labile DOC to downstream ecosystems, presenting data from a wide range of glacier systems to determine sources and sinks of DOC in glacial and proglacial systems. We subsequently focus upon the Greenland Ice Sheet (GrIS) which is the largest source of glacial runoff at present (400 km3 yr-1), with predicted increases in future decades. We report high fluxes of particulate organic carbon (POC), DOC and LMW labile fractions from a large GrIS catchment during two contrasting melt seasons. POC dominates OC export, is sourced from the ice sheet bed and contains a significant bioreactive component (~10% carbohydrates). The LMW-DOC "labile" fraction derives almost entirely from microbial activity on the ice sheet surface, which is supported by data from glacier systems also presented here. Annual fluxes of DOC, POC and labile components were lower in 2010 than 2009, despite a ~2 fold increase in runoff fluxes in 2010, suggesting production-limited DOC/POC sources. Scaled to the entire ice sheet, combined DOC and POC fluxes are of a similar order of magnitude to other large Arctic river systems and may represent an important source of organic carbon to the North Atlantic, Greenland and Labrador Seas.
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Sources and Transformations of Carbon and Nitrogen in the Potomac River Estuary
NASA Astrophysics Data System (ADS)
Pennino, M. J.; Kaushal, S.; Murthy, S.
2011-12-01
Urbanization has altered the transport of nitrogen (N) and carbon (C) in river ecosystems, making it important to understand how rivers are responding to these increased inputs of C and N. This study examines the capacity of a major tributary of the Chesapeake Bay, the Potomac River, to transform N and C inputs from the world's largest advanced wastewater treatment facility (Washington D.C. Water and Sewer Authority). Surface water and effluent samples were collected monthly for one year, along longitudinal transects of the Potomac River. Water samples were analyzed for the major dissolved and particulate forms of C and N. Nitrate stable isotopes were used to trace the fate of wastewater nitrate, as well as how other nitrate sources vary downriver. Sources of carbon downriver were traced using fluorescence spectroscopy, excitation emission matrices (EEMs), and PARAFAC modeling. Historical influent and effluent data on C and N levels were also compared with regional population growth data, climate change data, and long-term interannual records of C and N levels within downstream stations along the Potomac River. Improvements in treatment technology over the past two decades have shown significant decreases in effluent nitrogen levels, with corresponding decreases overtime of nutrients at downstream sampling stations. Levels of nitrate show increases within the vicinity of the wastewater treatment outfall, but decrease rapidly downstream, potentially indicating nutrient uptake and/or denitrification. Total organic carbon levels show a smaller decrease downstream, resulting in an increase in the C:N ratio downstream. Longitudinal river chemistry data also show that dissolved inorganic nitrogen goes down while total organic nitrogen goes up with distance downriver, indicating biological transformations are taking place along the river. Preliminary data from fluorescence EEMs suggested that more humic-like organic matter is important above the wastewater treatment plant, but more protein-like organic matter is present below the treatment plant. However, this fluorescence signal from wastewater organic matter disappears within 2-4 km downriver, indicating rapid processing of the labile organic matter within the river. Nitrate isotope data for both upriver and downriver samples show a signal from manure or sewage inputs, indicating a potential influence from animal farms upstream in the Potomac. However, only the downriver samples show evidence for denitrification. Additionally, the higher 15N isotope levels of nitrate, which are characteristic of wastewater sources, disappear by 20 km downriver. Majors rivers like the Potomac may have a huge capacity for transforming and processing large carbon and nitrogen inputs within a short distance. Greater knowledge of how land management and climate change impacts these transformations will be important in predicting changes in the amounts, forms, and stoichiometry of nutrient loads to coastal waters.
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Zha, Weibin; Edin, Matthew L.; Vendrov, Kimberly C.; Schuck, Robert N.; Lih, Fred B.; Jat, Jawahar Lal; Bradbury, J. Alyce; DeGraff, Laura M.; Hua, Kunjie; Tomer, Kenneth B.; Falck, John R.; Zeldin, Darryl C.; Lee, Craig R.
2014-01-01
Adipogenesis plays a critical role in the initiation and progression of obesity. Although cytochrome P450 (CYP)-derived epoxyeicosatrienoic acids (EETs) have emerged as a potential therapeutic target for cardiometabolic disease, the functional contribution of EETs to adipogenesis and the pathogenesis of obesity remain poorly understood. Our studies demonstrated that induction of adipogenesis in differentiated 3T3-L1 cells (in vitro) and obesity-associated adipose expansion in high-fat diet (HFD)-fed mice (in vivo) significantly dysregulate the CYP epoxygenase pathway and evoke a marked suppression of adipose-derived EET levels. Subsequent in vitro experiments demonstrated that exogenous EET analog administration elicits potent anti-adipogenic effects via inhibition of the early phase of adipogenesis. Furthermore, EET analog administration to mice significantly mitigated HFD-induced weight gain, adipose tissue expansion, pro-adipogenic gene expression, and glucose intolerance. Collectively, these findings suggest that suppression of EET bioavailability in adipose tissue is a key pathological consequence of obesity, and strategies that promote the protective effects of EETs in adipose tissue offer enormous therapeutic potential for obesity and its downstream pathological consequences. PMID:25114171
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Protein biogenesis machinery is a driver of replicative aging in yeast
Janssens, Georges E; Meinema, Anne C; González, Javier; Wolters, Justina C; Schmidt, Alexander; Guryev, Victor; Bischoff, Rainer; Wit, Ernst C; Veenhoff, Liesbeth M; Heinemann, Matthias
2015-01-01
An integrated account of the molecular changes occurring during the process of cellular aging is crucial towards understanding the underlying mechanisms. Here, using novel culturing and computational methods as well as latest analytical techniques, we mapped the proteome and transcriptome during the replicative lifespan of budding yeast. With age, we found primarily proteins involved in protein biogenesis to increase relative to their transcript levels. Exploiting the dynamic nature of our data, we reconstructed high-level directional networks, where we found the same protein biogenesis-related genes to have the strongest ability to predict the behavior of other genes in the system. We identified metabolic shifts and the loss of stoichiometry in protein complexes as being consequences of aging. We propose a model whereby the uncoupling of protein levels of biogenesis-related genes from their transcript levels is causal for the changes occurring in aging yeast. Our model explains why targeting protein synthesis, or repairing the downstream consequences, can serve as interventions in aging. DOI: http://dx.doi.org/10.7554/eLife.08527.001 PMID:26422514
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Eady, Colin C.; Kamoi, Takahiro; Kato, Masahiro; Porter, Noel G.; Davis, Sheree; Shaw, Martin; Kamoi, Akiko; Imai, Shinsuke
2008-01-01
Through a single genetic transformation in onion (Allium cepa), a crop recalcitrant to genetic transformation, we suppressed the lachrymatory factor synthase gene using RNA interference silencing in six plants. This reduced lachrymatory synthase activity by up to 1,544-fold, so that when wounded the onions produced significantly reduced levels of tear-inducing lachrymatory factor. We then confirmed, through a novel colorimetric assay, that this silencing had shifted the trans-S-1-propenyl-l-cysteine sulfoxide breakdown pathway so that more 1-propenyl sulfenic acid was converted into di-1-propenyl thiosulfinate. A consequence of this raised thiosulfinate level was a marked increase in the downstream production of a nonenzymatically produced zwiebelane isomer and other volatile sulfur compounds, di-1-propenyl disulfide and 2-mercapto-3,4-dimethyl-2,3-dihydrothiophene, which had previously been reported in trace amounts or had not been detected in onion. The consequences of this dramatic simultaneous down- and up-regulation of secondary sulfur products on the health and flavor attributes of the onion are discussed. PMID:18583530
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DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms.
Panova, Marina; Aronsson, Henrik; Cameron, R Andrew; Dahl, Peter; Godhe, Anna; Lind, Ulrika; Ortega-Martinez, Olga; Pereyra, Ricardo; Tesson, Sylvie V M; Wrange, Anna-Lisa; Blomberg, Anders; Johannesson, Kerstin
2016-01-01
The marine environment harbors a large proportion of the total biodiversity on this planet, including the majority of the earths' different phyla and classes. Studying the genomes of marine organisms can bring interesting insights into genome evolution. Today, almost all marine organismal groups are understudied with respect to their genomes. One potential reason is that extraction of high-quality DNA in sufficient amounts is challenging for many marine species. This is due to high polysaccharide content, polyphenols and other secondary metabolites that will inhibit downstream DNA library preparations. Consequently, protocols developed for vertebrates and plants do not always perform well for invertebrates and algae. In addition, many marine species have large population sizes and, as a consequence, highly variable genomes. Thus, to facilitate the sequence read assembly process during genome sequencing, it is desirable to obtain enough DNA from a single individual, which is a challenge in many species of invertebrates and algae. Here, we present DNA extraction protocols for seven marine species (four invertebrates, two algae, and a marine yeast), optimized to provide sufficient DNA quality and yield for de novo genome sequencing projects.
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Eady, Colin C; Kamoi, Takahiro; Kato, Masahiro; Porter, Noel G; Davis, Sheree; Shaw, Martin; Kamoi, Akiko; Imai, Shinsuke
2008-08-01
Through a single genetic transformation in onion (Allium cepa), a crop recalcitrant to genetic transformation, we suppressed the lachrymatory factor synthase gene using RNA interference silencing in six plants. This reduced lachrymatory synthase activity by up to 1,544-fold, so that when wounded the onions produced significantly reduced levels of tear-inducing lachrymatory factor. We then confirmed, through a novel colorimetric assay, that this silencing had shifted the trans-S-1-propenyl-l-cysteine sulfoxide breakdown pathway so that more 1-propenyl sulfenic acid was converted into di-1-propenyl thiosulfinate. A consequence of this raised thiosulfinate level was a marked increase in the downstream production of a nonenzymatically produced zwiebelane isomer and other volatile sulfur compounds, di-1-propenyl disulfide and 2-mercapto-3,4-dimethyl-2,3-dihydrothiophene, which had previously been reported in trace amounts or had not been detected in onion. The consequences of this dramatic simultaneous down- and up-regulation of secondary sulfur products on the health and flavor attributes of the onion are discussed.
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Microwave-Assisted Extraction for Microalgae: From Biofuels to Biorefinery
Pandhal, Jagroop
2018-01-01
The commercial reality of bioactive compounds and oil production from microalgal species is constrained by the high cost of production. Downstream processing, which includes harvesting and extraction, can account for 70–80% of the total cost of production. Consequently, from an economic perspective extraction technologies need to be improved. Microalgal cells are difficult to disrupt due to polymers within their cell wall such as algaenan and sporopollenin. Consequently, solvents and disruption devices are required to obtain products of interest from within the cells. Conventional techniques used for cell disruption and extraction are expensive and are often hindered by low efficiencies. Microwave-assisted extraction offers a possibility for extraction of biochemical components including lipids, pigments, carbohydrates, vitamins and proteins, individually and as part of a biorefinery. Microwave technology has advanced since its use in the 1970s. It can cut down working times and result in higher yields and purity of products. In this review, the ability and challenges in using microwave technology are discussed for the extraction of bioactive products individually and as part of a biorefinery approach. PMID:29462888
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NASA Astrophysics Data System (ADS)
Pv, F.; Sudheer, K.; Chaubey, I.; RAJ, C.; Her, Y.
2013-05-01
Biofuel is considered to be a viable alternative to meet the increasing fuel demand, and therefore many countries are promoting agricultural activities that help increase production of raw material for biofuel production. Mostly, the biofuel is produced from grain based crops such as Corn, and it apparently create a shortage in food grains. Consequently, there have been regulations to limit the ethanol production from grains, and to use cellulosic crops as raw material for biofuel production. However, cultivation of such cellulosic crops may have different effects on water quality in the watershed. Corn stover, one of the potential cellulosic materials, when removed from the agricultural field for biofuel production, causes a decrease in the organic nutrients in the field. This results in increased use of pesticides and fertilizers which in turn affect the downstream water quality due to leaching of the chemicals. On the contrary, planting less fertilizer-intensive cellulosic crops, like Switch Grass and Miscanthus, is expected to reduce the pollutant loadings from the watershed. Therefore, an ecologically viable land use scenario would be a mixed cropping of grain crops and cellulosic crops, that meet the demand for food and biofuel without compromising on the downstream water quality. Such cropping pattern can be arrived through a simulation-optimization framework. Mathematical models can be employed to evaluate various management scenarios related to crop production and to assess its impact on water quality. Soil and Water Assessment Tool (SWAT) model is one of the most widely used models in this context. SWAT can simulate the water and nutrient cycles, and also quantify the long-term impacts of land management practices, in a watershed. This model can therefore help take decisions regarding the type of cropping and management practices to be adopted in the watershed such that the water quality in the rivers is maintained at acceptable level. In this study, it is proposed to link SWAT model with an optimization algorithm, whose objective is to identify the optimal cropping pattern that results in maximum biomass production for biofuel generation as well as a minimum guaranteed amount of grain production. The optimal allocation ensures that the downstream water quality in the river is within a desirable limit. The study employed probabilistic information in order to address the uncertainty in model simulations. The residual variance of the model is used to transform the deterministic simulations in to probabilistic information. The proposed framework is illustrated using data pertaining to an agricultural watershed in the USA. The preliminary results of the study are encouraging and suggest that an appropriate combination of Corn, Soyabean, Miscanthus, Switch Grass and Pasture land can be arrived at through the developed framework. The placement of Miscanthus and Switch Grass in the watershed help improve the downstream water quality, while Corn and Soyabean makes it deteriorated. The spatial allocation of these crops therefore certainly plays a major role in the downstream water quality.
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Small, cold tributary streams can provide important thermal refuge habitat for cold-water fishes such as Pacific salmon (Oncorhynchus spp.) residing in warm, downstream receiving waters. We investigated the potential function of small perennial and non-perennial tributary stream...
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Factors Controlling Nitrogen Loadings in Major River Basins Across the United States
NASA Astrophysics Data System (ADS)
Boyer, E. W.; Alexander, R. B.; Galloway, J. N.; Golden, H. E.; Moore, R. B.; Schwarz, G. E.; Harvey, J. W.; Gomez-Velez, J. D.; Scott, D.; Clune, J.
2017-12-01
Inputs of reactive nitrogen (all N species except for N2) have been increasing worldwide, largely due to human activities associated with food production and energy consumption via the combustion of fossil fuels and biofuels. Despite the obvious essential benefits of a plentiful supply of food and energy, the adverse consequences associated with the accumulation of N in the environment are large. Most of the N created by human activities is released to the environment, often with unintended negative consequences. The greater the inputs of N to the landscape, the greater the potential for negative effects - caused by greenhouse gas production, ground level ozone, acid deposition, and N overload; which in turn can contribute to climate change, degradation of soils and vegetation, acidification of surface waters, coastal eutrophication, hypoxia, habitat loss, and loss of stratospheric ozone. Here we present a contemporary inventory of reactive N inputs to major water regions in the United States, and discuss accounting methods for quantifying N sources and transport. Furthermore, we quantify loadings of N from terrestrial headwaters downstream to coastal estuaries and embayments. N delivery to downstream waters is influenced by nutrient sources as well as coupled hydrological and biogeochemical processes occurring along the river corridor (e.g., travel time distributions, denitrification, and storage) that scale with stream size and are affected by impoundments such as lakes and reservoirs. This underscores the need to account for the nonlinear interactions of aquatic transport processes with watershed nutrient sources, as well as cumulative effects, in developing efficient nutrient reduction strategies. Our work is useful as a benchmark of the current N situation against which future progress can be assessed in varying water regions of the country; amidst changing N inputs, policies, and management strategies. Our results stem from the EPA Integrated Nitrogen Advisory Committee, the EPA Center for Integrated Multi-Scale Nutrient Pollution Solutions, and the John Wesley Powell Center River Corridor Working Group.
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Hu, Xiaoli; Lu, Ling; Li, Xin; Wang, Jianhua; Guo, Ming
2015-01-01
The Heihe River Basin (HRB) is a typical arid inland river basin in northwestern China. From the 1960s to the 1990s, the downstream flow in the HRB declined as a result of large, artificial changes in the distribution of water and land and a lack of effective water resource management. Consequently, the ecosystems of the lower reaches of the basin substantially deteriorated. To restore these degraded ecosystems, the Ecological Water Diversion Project (EWDP) was initiated by the Chinese government in 2000. The project led to agricultural and ecological changes in the middle reaches of the basin. In this study, we present three datasets of land use/cover in the middle reaches of the HRB derived from Landsat TM/ETM+ images in 2000, 2007 and 2011. We used these data to investigate changes in land use/cover between 2000 and 2011 and the implications for sustainable water resource management. The results show that the most significant land use/cover change in the middle reaches of the HRB was the continuous expansion of farmland for economic interests. From 2000 to 2011, the farmland area increased by 12.01%. The farmland expansion increased the water resource stress; thus, groundwater was over-extracted and the ecosystem was degraded in particular areas. Both consequences are negative and potentially threaten the sustainability of the middle reaches of the HRB and the entire river basin. Local governments should therefore improve the management of water resources, particularly groundwater management, and should strictly control farmland reclamation. Then, water resources could be ecologically and socioeconomically sustained, and the balance between upstream and downstream water demands could be ensured. The results of this study can also serve as a reference for the sustainable management of water resources in other arid inland river basins. PMID:26115484
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2011-01-01
Background Oncoproteins encoded by the early region of adenoviruses have been shown to be powerful tools to study gene regulatory mechanisms, which affect major cellular events such as proliferation, differentiation, apoptosis and oncogenic transformation. They are possesing a key role to favor viral replication via their interaction with multiple cellular proteins. In a yeast two-hybrid screen we have identified Sprouty1 (Spry1) as a target of adenoviral E1A Oncoproteins. Spry proteins are central and complex regulators of the receptor tyrosine kinase (RTK) signalling pathway. The deregulation of Spry family members is often associated with alterations of the RTK signalling and its downstream effectors, leading to the ERK pathway. Results Here, we confirm our yeast two-hybrid data, showing the interaction between Spry1 and E1A in GST pull-down and immunoprecipitation assays. We also demonstrated the interaction of E1A with two further Spry isoforms. Using deletion mutants we identified the N-terminus and the CR conserved region (CR) 3 of E1A- and the C-terminal half of Spry1, which contains the highly conserved Spry domain, as the essential sites for direct interaction between Spry and E1A. Immunofluorescent microscopy data revealed a co-localization of E1A13S with Spry1 in the cytoplasm. SRE and TRE reporter assays demonstrated that co-expression of Spry1 with E1A13S abolishes the inhibitory function of Spry1 in RTK signalling, which is consequently accompanied with a decrease of E1A13S-induced gene expression. Conclusions These results establish Spry1 as a cytoplasmic localized cellular target for E1A oncoproteins to regulate the RTK signalling pathway, and consequently cellular events downstream of RTK that are essential for viral replication and transformation. PMID:21518456
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National Mapping of Wetland Connectivity | Science Inventory ...
Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrologic connectivity is particularly significant, since movement of chemical constituents and biota flows are often associated with water flow. While wetlands have many important on-site functions, the degree to which they are connected to other ecosystems is a controlling influence on the effect these waters have on the larger landscape. Specifically, wetlands with high connectivity can serve as sources (e.g., net exporters of dissolved carbon), while those with low connectivity can function as sinks (e.g., net importers of suspended sediments). Here we focus on so-called “geographically isolated wetlands” (GIWs), or wetlands that are completely surrounded by uplands. While these wetlands normally lack surface water connections, they can be hydrologically connected to downstream waters through intermittent surface flow or groundwater. To help quantify connectivity of GIWs with downstream waters, we developed a system to classify GIWs based on type, magnitude, and frequency of hydrologic connectivity. We determine type (overland, shallow groundwater, or deep groundwater connectivity) by considering soil and bedrock permeability. For magnitude, we developed indices to represent tra
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Wetland Hydrological Connectivity: A Classification Approach ...
Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrologic connectivity is particularly significant, since movement of chemical constituents and biota flows are often associated with water flow. While wetlands have many important on-site functions, the degree to which they are connected to other ecosystems is a controlling influence on the effect these waters have on the larger landscape. Specifically, wetlands with high connectivity can serve as sources (e.g., net exporters of dissolved carbon), while those with low connectivity can function as sinks (e.g., net importers of suspended sediments). Here we focus on so-called “geographically isolated wetlands” (GIWs), or wetlands that are completely surrounded by uplands. While these wetlands normally lack surface water connections, they can be hydrologically connected to downstream waters through intermittent surface flow or groundwater. To help quantify connectivity of GIWs with downstream waters, we developed a system to classify GIWs based on type, magnitude, and frequency of hydrologic connectivity. We determine type (overland, shallow groundwater, or deep groundwater connectivity) by considering soil and bedrock permeability. For magnitude, we developed indices to repre
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Hunchak-Kariouk, Kathryn; Buxton, Debra E.; Hickman, R. Edward
1999-01-01
Relations of water quality to streamflow were determined for 18 water-quality constituents at 28 surface-water-quality stations within the drainage area of the Atlantic Coastal, lower Delaware River, and Delaware Bay Basins for water years 1976-93. Surface-water-quality and streamflow data were evaluated for trends (through time) in constituent concentrations during high and low flows, and relations between constituent concentration and streamflow, and between constituent load and streamflow, were determined. Median concentrations were calculated for the entire period of study (water years 1976-93) and for the last 5 years of the period of study (water years 1989-93) to determine whether any large variation in concentration exists between the two periods. Medians also were used to determine the seasonal Kendall\\'s tau statistic, which was then used to evaluate trends in concentrations during high and low flows. Trends in constituent concentrations during high and low flows were evaluated to determine whether the distribution of the observations changes through time for intermittent (nonpoint storm runoff) and constant (point sources and ground water) sources, respectively. High- and low-flow trends in concentrations were determined for some constituents at 26 of the 28 water-quality stations. Seasonal effects on the relations of concentration to streamflow are evident for 10 constituents at 14 or more stations. Dissolved oxygen shows seasonal dependency at all stations. Negative slopes of relations of concentration to streamflow, which indicate a decrease in concentration at high flows, predominate over positive slopes because of dilution of instream concentrations from storm runoff. The slopes of the regression lines of load to streamflow were determined in order to show the relative contributions to the instream load from constant (point sources and ground water) and intermittent sources (storm runoff). Greater slope values indicate larger contributions from storm runoff to instream load, which most likely indicate an increased relative importance of nonpoint sources. Load-to-streamflow relations along a stream reach that tend to increase in a downstream direction indicate the increased relative importance of contributions from storm runoff. Likewise, load-to-streamflow relations along a stream reach that tend to decrease in a downstream direction indicate the increased relative importance of point sources and ground-water discharge. The magnitudes of the load slopes for five constituents increase in the downstream direction along the Great Egg Harbor River, indicating an increased relative importance of storm runoff for these constituents along the river. The magnitudes of the load slopes for 11 constituents decrease in the downstream direction along the Assunpink Creek and for 5 constituents along the Maurice River, indicating a decreased relative importance of storm runoff for these constituents along the rivers.
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NASA Astrophysics Data System (ADS)
van de Giesen, N.; Andreini, M.; Liebe, J.; Steenhuis, T.; Huber-Lee, A.
2005-12-01
After a strong reduction in investments in water infrastructure in Sub-Saharan Africa, we now see a revival and increased interest to start water-related projects. The global political willingness to work towards the UN millennium goals are an important driver behind this recent development. Large scale irrigation projects, such as were constructed at tremendous costs in the 1970's and early 1980's, are no longer seen as the way forward. Instead, the construction of a large number of small, village-level irrigation schemes is thought to be a more effective way to improve food production. Such small schemes would fit better in existing and functioning governance structures. An important question now becomes what the cumulative (downstream) impact is of a large number of small irrigation projects, especially when they threaten to deplete transboundary water resources. The Volta Basin in West Africa is a transboundary river catchment, divided over six countries. Of these six countries, upstream Burkina Faso and downstream Ghana are the most important and cover 43% and 42% of the basin, respectively. In Burkina Faso (and also North Ghana), small reservoirs and associated irrigation schemes are already an important means to improve the livelihoods of the rural population. In fact, over two thousand such schemes have already been constructed in Burkina Faso and further construction is to be expected in the light of the UN millennium goals. The cumulative impact of these schemes would affect the Akosombo Reservoir, one of the largest manmade lakes in the world and an important motor behind the economic development in (South) Ghana. This presentation will put forward an analytical framework that allows for the impact assessment of (large) ensembles of small reservoirs. It will be shown that despite their relatively low water use efficiencies, the overall impact remains low compared to the impact of large dams. The tools developed can be used in similar settings elsewhere in the developing world. The methods are mainly based on relatively objective observations as provided by satellites. As such, these tool provide a good basis for transboundary impact assessment and conflict avoidance.
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Jordan, Martha S; Koretzky, Gary A
2010-04-01
The adaptor protein SLP-76 is expressed in multiple hematopoietic lineages including T cells, platelets, and neutrophils. SLP-76 mediated signaling is dependent on its multiple protein interaction domains, as it creates a scaffold on which key signaling complexes are built. SLP-76 is critical for supporting signaling downstream of both immunoreceptors and integrins. The signaling molecules used both upstream and downstream of SLP-76 are similar among these receptors and across cell types; however, important differences exist. Appreciating how SLP-76 coordinates signal transduction across different cell and receptor types provides insights into the complex interplay of pathways critical for activation of cells of the immune system that are essential for host defense.
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NASA Astrophysics Data System (ADS)
Susperregui, A.
2010-12-01
The Rance basin (France) offers potential to make a full-scale assessment of the environmental impact of a tidal power station after 50 years of operation. Consequences on biology, hydrodynamics and sedimentology were observed and nowadays, some of these changes are still acting on the natural system. The tidal dynamic was completely artificialised by the dam construction. The two main consequences are the reduction of exundation area and the extension of slack duration. Sedimentary dynamic depending on hydrodynamics conditions, changes in sediment distribution were also observed. Before the tidal power station construction, sands lined the gravel bed channel, recovered the bottom and formed beaches and banks. Coves and the upstream part of the estuary were dominated by a fine sedimentation, forming mudflats in a classical configuration slikke/schorre. Nowadays, mudflats extended to the center of the basin and all coves are occupied. The important inertia induced by the slack extension caused a slowing down on currents velocities, making easier the fine suspension deposit. The siltation is most important upstream, were the turbidity maximum was shifted, generating problems for navigation and banks access. A solution of sediment management was envisaged from 2001, by the digging of a sediments trap of 91 000 m3, near the Châtelier Lock. Sedimentation monitoring in this trap shows an intense filling over the first two years of functioning, then a slowing down leading to a complete filling from 2005. This trap also showed a beneficial interest on the sedimentation rates of the mudflats closed to it, which decreased. To understand how fine sediment is eroded and transported into this maritime area, an optical backscatter sensor was installed 1.5 km upstream of the tidal power station. During spring tides, the tidal power station functions in a “double-acting” cycle. This particular working leads to an important increase of turbidity during the artificial tidal cycle. Currents seem very strong close to the turbines and are responsible for intense bottom erosion in their area, as it is observed in the most downstream mudflat. The importance of flood currents versus ebb ones, combined to slack extension, explain the upstream sediments fluxes. But we cannot assume for the moment that is the only fine sediment source. A second turbidimeter is installed on the oceanic front of the dam to determine if there is a coastal contribution and results will be dealt soon. Figure 2: Example of turbidity raise during a “double-acting” cycle.
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Effects of small impoundments on downstream crayfish assemblages
Susan B. Adams
2013-01-01
Dams and impoundments, both large and small, affect downstream physicochemical characteristics and up- and downstream biotic communities. I tested whether small dams and their impoundments altered downstream crayfish assemblages in northern Mississippi. I sampled crayfish and measured physicochemical variables at 4 sites downstream of impoundments (outlet sites) and 4...
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Quantifying sediment dynamics on alluvial fans, Iglesia basin, south Central Argentine Andes
NASA Astrophysics Data System (ADS)
Harries, Rebekah; Kirstein, Linda; Whittaker, Alex; Attal, Mikael; Peralta, Silvio
2017-04-01
Qualitative interpretations of environmental change drawn from alluvial fan stratigraphy typically tie the deposition of greater volumes of coarser sediment to wetter climatic periods. For example, step changes in sediment flux and discharge associated with glacial-interglacial cycles are often linked to the progradation and back stepping of a fan's toe (Harvey et al, 2002). Indeed, more recent quantitative stratigraphic models demonstrate changes in the volume and calibre of sediment fluxed from an uplifted catchment can produce predictable shifts in the rate at which fluvial deposits fine downstream (Duller et al. 2010, Armitage et al. 2011). These interpretations, however, make three important assumptions: 1) the volume and calibre of the sediment transferred from an eroding mountain belt to a depositional basin is directly related to climate through some value of time-averaged discharge or catchment wetness; 2) lateral sources of sediment, such as tributaries, do not significantly influence the pattern of deposition in a basin and, similarly, 3) the reworking of older fan surfaces is minimal and does not impact the depositional pattern of younger deposits. Here we demonstrate each of these assumptions underestimates the importance of variance in transportable grain sizes in influencing the local and basin-wide deposited grain size trends. Using the Iglesia basin in the Argentine south Central Andes as a natural laboratory, we compare three large, adjacent, alluvial fan systems whose catchments experience the same background tectonic and climatic forcing. We find regional climate forcing is not expressed uniformly in the downstream grain size fining rates of their modern systems. Furthermore, we observe the variance in transportable grain sizes supplied from each primary catchment and the variance of material introduced by tributaries and fan surfaces downstream can act as first order controls on the rate of downstream fining. We also raise the importance of considering factors such as climate storminess and degree of glacial cover in having a dominant control on the variance of sediment released. These findings have significant implications for our ability to invert the fluvial stratigraphy for climatically driven changes in discharge and highlight a need to quantify the impact of sediment dynamics on modern systems so that we may better understand the limitations in applying quantitative models to ancient stratigraphy.
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Effects of Deep Convection on Atmospheric Chemistry
NASA Technical Reports Server (NTRS)
Pickering, Kenneth E.
2007-01-01
This presentation will trace the important research developments of the last 20+ years in defining the roles of deep convection in tropospheric chemistry. The role of deep convection in vertically redistributing trace gases was first verified through field experiments conducted in 1985. The consequences of deep convection have been noted in many other field programs conducted in subsequent years. Modeling efforts predicted that deep convection occurring over polluted continental regions would cause downstream enhancements in photochemical ozone production in the middle and upper troposphere due to the vertical redistribution of ozone precursors. Particularly large post-convective enhancements of ozone production were estimated for convection occurring over regions of pollution from biomass burning and urban areas. These estimates were verified by measurements taken downstream of biomass burning regions of South America. Models also indicate that convective transport of pristine marine boundary layer air causes decreases in ozone production rates in the upper troposphere and that convective downdrafts bring ozone into the boundary layer where it can be destroyed more rapidly. Additional consequences of deep convection are perturbation of photolysis rates, effective wet scavenging of soluble species, nucleation of new particles in convective outflow, and the potential fix stratosphere-troposphere exchange in thunderstorm anvils. The remainder of the talk will focus on production of NO by lightning, its subsequent transport within convective clouds . and its effects on downwind ozone production. Recent applications of cloud/chemistry model simulations combined with anvil NO and lightning flash observations in estimating NO Introduction per flash will be described. These cloud-resolving case-study simulations of convective transport and lightning NO production in different environments have yielded results which are directly applicable to the design of lightning parameterizations for global chemical transport models. The range of mean values (factor of 3) of NO production per flash (or per meter of lightning channel length) that have been deduced from the model will be shown and compared with values of production in the literature that have been deduced using other methods, Results show that on a per flash basis, IC flashes are nearly as productive of NO as CG flashes. When combined with the global flash rate of 44 flashes per second from NASA's Optical Transient Detector (OTD) measurements, these estimates and the results from other techniques yield global NO production rates of 2-9 TgN/year. Vertical profiles of lightning NOx mass at the end of the 3-D storm simulations have been summarized to yield suggested profiles for use in global models. Simulations of the photochemistry over the 24 hours following a storm have been performed to determine the additional ozone production which can be attributed to lightning NO.
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Legionella pneumophila, the medically important species within the genus Legionella, is a concern in engineered water systems. Its ability to amplify within free-living amoebae is well documented, but its interactions/ecology within the microbial community of drinking water biofi...
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40 CFR 80.69 - Requirements for downstream oxygenate blending.
Code of Federal Regulations, 2013 CFR
2013-07-01
... PROGRAMS (CONTINUED) REGULATION OF FUELS AND FUEL ADDITIVES Reformulated Gasoline § 80.69 Requirements for... produced or imported. (7) Conduct a quality assurance sampling and testing program to be carried out at the.... (i) The sampling and testing program shall be conducted as follows: (A) All samples shall be...
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40 CFR 80.69 - Requirements for downstream oxygenate blending.
Code of Federal Regulations, 2014 CFR
2014-07-01
... PROGRAMS (CONTINUED) REGULATION OF FUELS AND FUEL ADDITIVES Reformulated Gasoline § 80.69 Requirements for... produced or imported. (7) Conduct a quality assurance sampling and testing program to be carried out at the.... (i) The sampling and testing program shall be conducted as follows: (A) All samples shall be...
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40 CFR 80.69 - Requirements for downstream oxygenate blending.
Code of Federal Regulations, 2012 CFR
2012-07-01
... PROGRAMS (CONTINUED) REGULATION OF FUELS AND FUEL ADDITIVES Reformulated Gasoline § 80.69 Requirements for... produced or imported. (7) Conduct a quality assurance sampling and testing program to be carried out at the.... (i) The sampling and testing program shall be conducted as follows: (A) All samples shall be...
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Background/Question/Methods Headwater streams can serve as important sources and sinks for nitrogen (N) for downstream receiving waters. Prior research on N removal in small streams has largely focused on growing season conditions. Here we examine the influence of headwater...
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UPSTREAM-TO-DOWNSTREAM CHANGES IN NUTRIENT EXPORT RISK
One of the early operating principles of landscape ecology was the importance of studying the
movement of energy, nutrients, and biota in the horizontal or x,y plane (Risser et al. 1984). The new focus on horizontal movement was in part based on the recognition that many ecol... -
USDA-ARS?s Scientific Manuscript database
Synthetic weather generators are important for continuous-simulation of agricultural watersheds for risk analyses of downstream water quality. Many watersheds are sparsely or totally ungauged and daily weather must either be transposed or augmented. Since water quality models must recognize runoff...
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An evaluation of the precipitation distribution associated with landfalling tropical systems
NASA Astrophysics Data System (ADS)
Atallah, Eyad H.
Several recent landfalling tropical cyclones (e.g. Dennis, Floyd, and Irene 1999) have highlighted a need for a refinement in the forecasting paradigms and techniques in the area of quantitative precipitation forecasting (QPF). Accordingly, several landfalling tropical storms were composited based on the precipitation distribution relative to the cyclone track (i.e. left of, right of, or along track), and cases from each composite were examined using a potential vorticity (PV) and quasi-geostrophic (QG) framework. Results indicate that a left of track precipitation distribution (e.g. Floyd 1999) is characteristic of tropical systems undergoing extratropical transition (ET). In these cases, a significant positively tilted mid-latitude trough approaches the cyclone from the northwest, shifting precipitation to the north-northwest of the cyclone. PV redistribution through diabatic heating then leads to enhanced ridging over and downstream of the tropical cyclone resulting in an increase in the cyclonic advection of vorticity by the thermal wind. Precipitation distribution is heaviest to the right of the track of the storm when downstream intensification of the ridge is important (e.g. David, 1979). Enhancement of the downstream ridge ahead of a weak mid-latitude trough accentuates the PV gradient between the tropical system and the downstream ridge. This, in combination with a slight acceleration in the movement of the tropical system, produces a region of enhanced positive PV advection (implied ascent) between the tropical system and the downstream ridge. Precipitation is heaviest along/very near the track of a storm when shear values are low and/or oriented along the track of the tropical cyclone (e.g. Fran 1996). Without large scale forcing for vertical motion associated with a midlatitude trough, most of the ascent remains concentrated near the storm core in the region of greatest diabatic heating and maximum wind speeds. In all cases, the diabatic enhancement of the downstream ridge is instrumental in the redistribution of precipitation about the tropical system. Unfortunately, this process is not well simulated in operational forecast models, leading to systematic errors in QPF.
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Wehmeyer, Loren L.; Bales, Jerad D.
2009-01-01
Understanding the relation between dam release characteristics and downstream water quality in the lower Roanoke River, North Carolina, is important for natural-resource management and ecosystem protection. Data from four raingages, four water-quality monitoring sites, and one streamflow-measurement site were used to identify statistical relations and discernible quantitative or qualitative patterns linking Roanoke River instream dissolved-oxygen (DO) levels to releases at Roanoke Rapids Dam for the period 1998-2005. The time-series DO data, complicated by the occurrence of major hurricanes in the short period of hourly DO data collection at the dam, present a mixed picture of the effects of hydropower peaking (a technique used by hydropower dam operators to produce electricity when consumption is high by passing a large volume of water through the dam turbines, which dramatically increases the volume of flow below the dam) on downstream DO. Other than in 2003 when dissolved-oxygen concentrations in the Roanoke River were likely affected by runoff from Hurricane Isabel rains, there were not consistent, statistically significant differences detected in the annual medians of hourly and(or) daily DO values during peaking versus nonpeaking periods. Along the Roanoke River, downstream of Roanoke Rapids Dam at Oak City, North Carolina, using a 95-percent confidence interval, the median value of the May-November daily mean DO concentrations for each year was lower during peaking periods for 2 years, higher for 2 years, and not significantly different for 4 years. Downstream at Jamesville, North Carolina, also using a 95-percent confidence interval, the median value of the annual May-November daily mean DO concentrations during hydropower peaking was lower for 4 years, higher for 2 years, and not significantly different for 2 years. In summary, the effect of hydropower peaking on downstream DO was inconsistent. Conversely, large precipitation events downstream from the dam resulted in consistent, statistically significant decreases in DO in the mainstem of the Roanoke River at Oak City and Jamesville.
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Long-range effect of cyanide on mercury methylation in a gold mining area in southern Ecuador.
Guimaraes, Jean Remy Davée; Betancourt, Oscar; Miranda, Marcio Rodrigues; Barriga, Ramiro; Cueva, Edwin; Betancourt, Sebastián
2011-11-01
Small-scale gold mining in Portovelo-Zaruma, Southern Equador, performed by mercury amalgamation and cyanidation, yields 9-10 t of gold/annum, resulting in annual releases of around 0.65 t of inorganic mercury and 6000 t of sodium cyanide in the local river system. The release of sediments, cyanide, mercury, and other metals present in the ore such as lead, manganese and arsenic significantly reduces biodiversity downstream the processing plants and enriches metals in bottom sediments and biota. However, methylmercury concentrations in sediments downstream the mining area were recently found to be one order of magnitude lower than upstream or in small tributaries. In this study we investigated cyanide, bacterial activity in water and sediment and mercury methylation potentials in sediments along the Puyango river watershed, measured respectively by in-situ spectrophotometry and incubation with (3)H-leucine and (203)Hg(2+). Free cyanide was undetectable (<1 μg·L(-1)) upstream mining activities, reached 280 μg·L(-1) a few km downstream the processing plants area and was still detectable about 100 km downstream. At stations with detectable free cyanide in unfiltered water, 50% of it was dissolved and 50% associated to suspended particles. Bacterial activity and mercury methylation in sediment showed a similar spatial pattern, inverse to the one found for free cyanide in water, i.e. with significant values in pristine upstream sampling points (respectively 6.4 to 22 μgC·mg wet weight(-1)·h(-1) and 1.2 to 19% of total (203) Hg·gdry weight(-1)·day(-1)) and undetectable downstream the processing plants, returning to upstream values only in the most distant downstream stations. The data suggest that free cyanide oxidation was slower than would be expected from the high water turbulence, resulting in a long-range inhibition of bacterial activity and hence mercury methylation. The important mercury fluxes resultant from mining activities raise concerns about its biomethylation in coastal areas where many mangrove areas have been converted to shrimp farming. Copyright © 2011. Published by Elsevier B.V.
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Laube, Hendrik; Matysik, Frank-Michael; Schmidberger, Andreas; Mehlmann, Kerstin; Toursel, Andreas; Boden, Jana
2016-01-01
During the downstream process of bio-based bulk chemicals, organic impurities, mostly residues from the fermentation process, must be separated to obtain a pure and ready-to-market chemical. In this study, capillary electrophoresis was investigated for the non-targeting downstream process monitoring of organic impurities and simultaneous quantitative detection of lactic acid during the purification process of fermentatively produced lactic acid. The downstream process incorporated 11 separation units, ranging from filtration, adsorption and ion exchange to electrodialysis and distillation, and 15 different second-generation renewable feedstocks were processed into lactic acid. The identification of organic impurities was established through spiking and the utilization of an advanced capillary electrophoresis mass spectrometry system. A total of 53 % of the organic impurities were efficiently removed via bipolar electrodialysis; however, one impurity, pyroglutamic acid, was recalcitrant to separation. It was demonstrated that the presence of pyroglutamic acid disrupts the polymerization of lactic acid into poly lactic acid. Pyroglutamic acid was present in all lactic acid solutions, independent of the type of renewable resource or the bacterium applied. Pyroglutamic acid, also known as 5-oxoproline, is a metabolite in the glutathione cycle, which is present in all living microorganisms. pyroglutamic acid is found in many proteins, and during intracellular protein metabolism, N-terminal glutamic acid and glutamine residues can spontaneously cyclize to become pyroglutamic acid. Hence, the concentration of pyroglutamic acid in the lactic acid solution can only be limited to a certain amount. The present study proved the capillary electrophoresis system to be an important tool for downstream process monitoring. The high product concentration encountered in biological production processes did not hinder the capillary electrophoresis from separating and detecting organic impurities, even at minor concentrations. The coupling of the capillary electrophoresis with a mass spectrometry system allowed for the straightforward identification of the remaining critical impurity, pyroglutamic acid. Although 11 separation units were applied during the downstream process, the pyroglutamic acid concentration remained at 12,900 ppm, which was comparatively high. All organic impurities found were tracked by the capillary electrophoresis, allowing for further separation optimization.
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Conjunctive coding in an evolved spiking model of retrosplenial cortex.
Rounds, Emily L; Alexander, Andrew S; Nitz, Douglas A; Krichmar, Jeffrey L
2018-06-04
Retrosplenial cortex (RSC) is an association cortex supporting spatial navigation and memory. However, critical issues remain concerning the forms by which its ensemble spiking patterns register spatial relationships that are difficult for experimental techniques to fully address. We therefore applied an evolutionary algorithmic optimization technique to create spiking neural network models that matched electrophysiologically observed spiking dynamics in rat RSC neuronal ensembles. Virtual experiments conducted on the evolved networks revealed a mixed selectivity coding capability that was not built into the optimization method, but instead emerged as a consequence of replicating biological firing patterns. The experiments reveal several important outcomes of mixed selectivity that may subserve flexible navigation and spatial representation: (a) robustness to loss of specific inputs, (b) immediate and stable encoding of novel routes and route locations, (c) automatic resolution of input variable conflicts, and (d) dynamic coding that allows rapid adaptation to changing task demands without retraining. These findings suggest that biological retrosplenial cortex can generate unique, first-trial, conjunctive encodings of spatial positions and actions that can be used by downstream brain regions for navigation and path integration. Moreover, these results are consistent with the proposed role for the RSC in the transformation of representations between reference frames and navigation strategy deployment. Finally, the specific modeling framework used for evolving synthetic retrosplenial networks represents an important advance for computational modeling by which synthetic neural networks can encapsulate, describe, and predict the behavior of neural circuits at multiple levels of function. (PsycINFO Database Record (c) 2018 APA, all rights reserved).
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Evaluation of Potential Climate Change Impacts on Particle Movement in Open Channel Flow
NASA Astrophysics Data System (ADS)
Lin, E.; Tsai, C.
2014-12-01
It is important to develop a forecast model to predict the trajectory of sediment particles when extreme flow events occur. In extreme flow environments, the stochastic jump diffusion particle tracking model (SJD-PTM) can be used to model the movement of sediment particles in response to extreme events. This proposed SJD-PTM can be separated into three main parts — a drift motion, a turbulence term and a jump term due to random occurrences of extreme flow events. The study is intended to modify the jump term, which models the abrupt changes of particle position in the extreme flow environments. The frequency of extreme flow occurrences might change due to many uncertain factors such as climate change. The study attempts to use the concept of the logistic regression and the parameter of odds ratio, namely the trend magnitude to investigate the frequency change of extreme flow event occurrences and its impact on sediment particle movement. With the SJD-PTM, the ensemble mean and variance of particle trajectory can be quantified via simulations. The results show that by taking the effect of the trend magnitude into consideration, the particle position and its uncertainty may undergo a significant increase. Such findings will have many important implications to the environmental and hydraulic engineering design and planning. For instance, when the frequency of the occurrence of flow events with higher extremity increases, particles can travel further and faster downstream. It is observed that flow events with higher extremity can induce a higher degree of entrainment and particle resuspension, and consequently more significant bed and bank erosion.
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NASA Astrophysics Data System (ADS)
Musilova, M.; Tranter, M.; Takeuchi, N.; Anesio, A. M.
2014-12-01
Darkened glacier and ice sheet surfaces have lower albedos, absorb more solar radiation and consequently melt more rapidly. The increase in glacier surface darkening is an important positive feedback to warming global temperatures, leading to ever growing world-wide ice mass loss. Most studies focus primarily on glacial albedo darkening caused by the physical properties of snow and ice surfaces, and the deposition of dark impurities on glaciers. To date, however, the important effects of biological activity have not been included in most albedo reduction models. This study provides the first experimental evidence that microbial activity can significantly decrease the albedo of glacier surfaces. An original laboratory experiment, the cryoconite casserole, was designed to test the microbial darkening of glacier surface debris (cryoconite) under simulated Greenlandic summer conditions. It was found that minor fertilisation of the cryoconite (at nutrient concentrations typical of glacial ice melt) stimulated extensive microbial activity. Microbes intensified their organic carbon fixation and even mined phosphorous out of the glacier surface sediment. Furthermore, the microbial organic carbon production, accumulation and transformation caused the glacial debris to darken further by 17.3% reflectivity (albedo analogue). These experiments are consistent with the hypothesis that enhanced fertilisation by anthropogenic inputs results in substantial amounts of organic carbon fixation, debris darkening and ultimately to a considerable decrease in the ice albedo of glacier surfaces on global scales. The sizeable amounts of microbially produced glacier surface organic matter and nutrients can thus be a vital source of bioavailable nutrients for subglacial and downstream environments.
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Cue-Induced Cigarette Cravings and Smoking Cessation: The Role of Expectancies
Montgomery, Guy H.
2012-01-01
Introduction: Cue-induced cigarette cravings have been oft studied as potentially important predictors of smoking cessation outcomes. The literature on the relationship between cue-induced cravings and cessation, however, remains mixed. One possible explanation for the discrepant results in the literature may be the as-yet untested variability in expectancies of craving. Indeed, as with many interoceptive responses, cravings and their downstream consequences may be influenced by expectancies. To date, no study has examined the influence of expected cravings following smoking cue exposures on actual craving experiences and cessation outcomes. The objective of this study, therefore, was to test the possibility that smokers’ expected craving levels in response to smoking cues would be related to actual cravings following cue exposure and that expected cravings would be related to cessation outcomes. Methods: Nicotine-dependent adult smokers (n = 153) were exposed to sets of neutral and smoking cues and completed questionnaires assessing (a) prior to the exposures, the cigarette craving levels they expected to experience following the cue exposures and (b) following the exposures, their actual craving levels. Participants also reported the duration of their most recent quit attempt and their perceived future quit difficulty. Results: Findings indicated that expected cravings assessed prior to the cue exposures were significantly related to actual cravings following the exposures. In addition, both expected cravings and actual cravings were related to shorter previous quit duration and higher perceived quit difficulty. Conclusions: Study results highlight the importance of considering both expected and actual cravings in cue-induced craving paradigms. PMID:22218404
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Chen, Ling-Lin; Wu, Mei-Ling; Zhu, Feng; Kai, Jie-Jing; Dong, Jing-Yin; Wu, Xi-Mei; Zeng, Ling-Hui
2016-12-01
Previous study suggests that mTOR signaling pathway may play an important role in epileptogenesis. The present work was designed to explore the contribution of raptor protein to the development of epilepsy and comorbidities. Mice with conditional knockout of raptor protein were generated by cross-bred Rptor flox/flox mice with nestin-CRE mice. The expression of raptor protein was analyzed by Western blotting in brain tissue samples. Neuronal death and mossy fiber sprouting were detected by FJB staining and Timm staining, respectively. Spontaneous seizures were recorded by EEG-video system. Morris water maze, open field test, and excitability test were used to study the behaviors of Rptor CKO mice. As the consequence of deleting Rptor, downstream proteins of raptor in mTORC1 signaling were partly blocked. Rptor CKO mice exhibited decrease in body and brain weight under 7 weeks old and accordingly, cortical layer thickness. After kainic acid (KA)-induced status epilepticus, overactivation of mTORC1 signaling was markedly reversed in Rptor CKO mice. Although low frequency of spontaneous seizure and seldom neuronal cell death were observed in both Rptor CKO and control littermates, KA seizure-induced mossy fiber spouting were attenuated in Rptor CKO mice. Additionally, cognitive-deficit and anxiety-like behavior after KA-induced seizures were partly reversed in Rptor CKO mice. Loss of the Rptor gene in mice neural progenitor cells affects normal development in young age and may contribute to alleviate KA seizure-induced behavioral abnormalities, suggesting that raptor protein plays an important role in seizure comorbidities. © 2016 John Wiley & Sons Ltd.
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Al-Mufti, Fawaz; Amuluru, Krishna; Damodara, Nitesh; El-Ghanem, Mohammad; Nuoman, Rolla; Kamal, Naveed; Al-Marsoummi, Sarmad; Morris, Nicholas A; Dangayach, Neha S; Mayer, Stephan A
2018-07-15
Delayed cerebral ischemia (DCI) after aneurysmal subarachnoid hemorrhage (SAH) is an important cause of further morbidity and mortality after an already devastating condition. Though traditionally attributed to vasospasm of large capacitance arteries and the resulting down-stream disruption of cerebral blood flow, the pathogenesis of DCI has proven to be more complex with early brain injury, blood-brain barrier disruption, microthrombosis, cortical spreading depolarizations, and the failure of cerebral autoregulation as newly elucidated factors. Vasospasm is a known consequence of SAH. The standard of care includes close monitoring for neurological deterioration, most often with serial clinical examinations, transcranial Doppler ultrasonography, and vascular imaging (crucial for early detection of DCI and allows for prompt intervention). Nimodipine continues to remain an important pharmacological strategy to improve functional outcomes in patients with SAH at risk for developing vasospasm. The paradigm for first line therapy in patients with vasospasm of induced hypertension, hypervolemia, and hemodilution has recently been challenged. Current American Heart Association guidelines recommend targeting euvolemia and judicious use of the pharmacologically induced hypertension component. Symptomatic vasospasm patients who do not improve with this first line therapy require rescue intervention with mechanical or chemical angioplasty and optimization of cardiac output and hemoglobin levels. This can be escalated in a step-wise fashion to include adjunct treatments such as intrathecal administration of vasodilators and sympatholytic or thrombolytic therapies. This review provides a general overview of the treatment modalities for DCI with a focus on novel management strategies that show promising results for treating vasospasm to prevent DCI. Copyright © 2018. Published by Elsevier B.V.
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Wu, Hao; Kong, Lili; Cheng, Yanli; Zhang, Zhiguo; Wang, Yangwei; Lou, Manyu; Tan, Yi; Chen, Xiangmei; Miao, Lining; Cai, Lu
2015-01-01
Sulforaphane (SFN) prevents diabetic nephropathy (DN) in type 1 diabetes via up-regulation of nuclear factor (erythroid-derived 2)-like 2 (Nrf2). However, it has not been addressed whether SFN also prevents DN from type 2 diabetes or which Nrf2 downstream gene(s) play(s) the key role in SFN renal protection. Here we investigated whether Nrf2 is required for SFN protection against type 2 diabetes-induced DN and whether metallothionein (MT) is an Nrf2 downstream antioxidant using Nrf2 knockout (Nrf2-null) mice. In addition, MT knockout mice were used to further verify if MT is indispensable for SFN protection against DN. Diabetes-increased albuminuria, renal fibrosis, and inflammation were significantly prevented by SFN, and Nrf2 and MT expression was increased. However, SFN renal protection was completely lost in Nrf2-null diabetic mice, confirming the pivotal role of Nrf2 in SFN protection from type 2 diabetes-induced DN. Moreover, SFN failed to up-regulate MT in the absence of Nrf2, suggesting that MT is an Nrf2 downstream antioxidant. MT deletion resulted in a partial, but significant attenuation of SFN renal protection from type 2 diabetes, demonstrating a partial requirement for MT for SFN renal protection. Therefore, the present study demonstrates for the first time that as an Nrf2 downstream antioxidant, MT plays an important, though partial, role in mediating SFN renal protection from type 2 diabetes. PMID:26415026
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Alqarni, Mohammed; Myint, Kyaw Zeyar; Tong, Qin; Yang, Peng; Bartlow, Patrick; Wang, Lirong; Feng, Rentian; Xie, Xiang-Qun
2014-09-26
We performed molecular modeling and docking to predict a putative binding pocket and associated ligand-receptor interactions for human cannabinoid receptor 2 (CB2). Our data showed that two hydrophobic residues came in close contact with three structurally distinct CB2 ligands: CP-55,940, SR144528 and XIE95-26. Site-directed mutagenesis experiments and subsequent functional assays implicated the roles of Valine residue at position 3.32 (V113) and Leucine residue at position 5.41 (L192) in the ligand binding function and downstream signaling activities of the CB2 receptor. Four different point mutations were introduced to the wild type CB2 receptor: V113E, V113L, L192S and L192A. Our results showed that mutation of Val113 with a Glutamic acid and Leu192 with a Serine led to the complete loss of CB2 ligand binding as well as downstream signaling activities. Substitution of these residues with those that have similar hydrophobic side chains such as Leucine (V113L) and Alanine (L192A), however, allowed CB2 to retain both its ligand binding and signaling functions. Our modeling results validated by competition binding and site-directed mutagenesis experiments suggest that residues V113 and L192 play important roles in ligand binding and downstream signaling transduction of the CB2 receptor. Copyright © 2014 Elsevier Inc. All rights reserved.
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On the maximum energy of shock-accelerated cosmic rays at ultra-relativistic shocks
NASA Astrophysics Data System (ADS)
Reville, B.; Bell, A. R.
2014-04-01
The maximum energy to which cosmic rays can be accelerated at weakly magnetised ultra-relativistic shocks is investigated. We demonstrate that for such shocks, in which the scattering of energetic particles is mediated exclusively by ion skin-depth scale structures, as might be expected for a Weibel-mediated shock, there is an intrinsic limit on the maximum energy to which particles can be accelerated. This maximum energy is determined from the requirement that particles must be isotropized in the downstream plasma frame before the mean field transports them far downstream, and falls considerably short of what is required to produce ultra-high-energy cosmic rays. To circumvent this limit, a highly disorganized field is required on larger scales. The growth of cosmic ray-induced instabilities on wavelengths much longer than the ion-plasma skin depth, both upstream and downstream of the shock, is considered. While these instabilities may play an important role in magnetic field amplification at relativistic shocks, on scales comparable to the gyroradius of the most energetic particles, the calculated growth rates have insufficient time to modify the scattering. Since strong modification is a necessary condition for particles in the downstream region to re-cross the shock, in the absence of an alternative scattering mechanism, these results imply that acceleration to higher energies is ruled out. If weakly magnetized ultra-relativistic shocks are disfavoured as high-energy particle accelerators in general, the search for potential sources of ultra-high-energy cosmic rays can be narrowed.
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Matrix-Dependent Perturbation of TGFβ Signaling and Disease
Doyle, Jefferson J.; Gerber, Elizabeth E.; Dietz, Harry C.
2012-01-01
Transforming growth factor beta (TGFβ) is a multipotent cytokine that is sequestered in the extracellular matrix (ECM) through interactions with a number of ECM proteins. The ECM serves to concentrate latent TGFβ at sites of intended function, to influence the bioavailability and/or function of TGFβ activators, and perhaps to regulate the intrinsic performance of cell surface effectors of TGFβ signal propagation. The downstream consequences of TGFβ signaling cascades in turn provide feedback modulation of the ECM. This review covers recent examples of how genetic mutations in constituents of the ECM or TGFβ signaling cascade result in altered ECM homeostasis, cellular performance and ultimately disease, with an emphasis on emerging therapeutic strategies that seek to capitalize on this refined mechanistic understanding. PMID:22641039
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Kip, Michelle M A; Kusters, Ron; IJzerman, Maarten J; Steuten, Lotte M G
2015-01-01
Procalcitonin (PCT) is a specific marker for differentiating bacterial from non-infective causes of inflammation. It can be used to guide initiation and duration of antibiotic therapy in intensive care unit (ICU) patients with suspected sepsis, and might reduce the duration of hospital stay. Limiting antibiotic treatment duration is highly important because antibiotic over-use may cause patient harm, prolonged hospital stay, and resistance development. Several systematic reviews show that a PCT algorithm for antibiotic discontinuation is safe, but upfront investment required for PCT remains an important barrier against implementation. The current study investigates to what extent this PCT algorithm is a cost-effective use of scarce healthcare resources in ICU patients with sepsis compared to current practice. A decision tree was developed to estimate the health economic consequences of the PCT algorithm for antibiotic discontinuation from a Dutch hospital perspective. Input data were obtained from a systematic literature review. When necessary, additional information was gathered from open interviews with clinical chemists and intensivists. The primary effectiveness measure is defined as the number of antibiotic days, and cost-effectiveness is expressed as incremental costs per antibiotic day avoided. The PCT algorithm for antibiotic discontinuation is expected to reduce hospital spending by circa € 3503 per patient, indicating savings of 9.2%. Savings are mainly due to reductions in length of hospital stay, number of blood cultures performed, and, importantly, days on antibiotic therapy. Probabilistic and one-way sensitivity analyses showed the model outcome to be robust against changes in model inputs. Proven safe, a PCT algorithm for antibiotic discontinuation is a cost-effective means of reducing antibiotic exposure in adult ICU patients with sepsis, compared to current practice. Additional resources required for PCT are more than offset by downstream cost savings. This finding is highly important given the aim of preventing widespread antibiotic resistance.
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Schoenwaelder, Simone M.; Ono, Akiko; Nesbitt, Warwick S.; Lim, Joanna; Jarman, Kate; Jackson, Shaun P.
2010-01-01
Phosphoinositide (PI) 3-kinase (PI3K) signaling processes play an important role in regulating the adhesive function of integrin αIIbβ3, necessary for platelet spreading and sustained platelet aggregation. PI3K inhibitors are effective at reducing platelet aggregation and thrombus formation in vivo and as a consequence are currently being evaluated as novel antithrombotic agents. PI3K regulation of integrin αIIbβ3 activation (affinity modulation) primarily occurs downstream of Gi-coupled and tyrosine kinase-linked receptors linked to the activation of Rap1b, AKT, and phospholipase C. In the present study, we demonstrate an important role for PI3Ks in regulating the avidity (strength of adhesion) of high affinity integrin αIIbβ3 bonds, necessary for the cellular transmission of contractile forces. Using knock-out mouse models and isoform-selective PI3K inhibitors, we demonstrate that the Type Ia p110β isoform plays a major role in regulating thrombin-stimulated fibrin clot retraction in vitro. Reduced clot retraction induced by PI3K inhibitors was not associated with defects in integrin αIIbβ3 activation, actin polymerization, or actomyosin contractility but was associated with a defect in integrin αIIbβ3 association with the contractile cytoskeleton. Analysis of integrin αIIbβ3 adhesion contacts using total internal reflection fluorescence microscopy revealed an important role for PI3Ks in regulating the stability of high affinity integrin αIIbβ3 bonds. These studies demonstrate an important role for PI3K p110β in regulating the avidity of high affinity integrin αIIbβ3 receptors, necessary for the cellular transmission of contractile forces. These findings may provide new insight into the potential antithrombotic properties of PI3K p110β inhibitors. PMID:19940148
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Cada, Glenn F; Schweizer, Peter E
One of the most important environmental issues facing the hydropower industry is the adverse impact of hydroelectric projects on downstream fish passage. Fish that migrate long distances as part of their life cycle include not only important diadromous species (such as salmon, shads, and eels) but also strictly freshwater species. The hydropower reservoirs that downstream-moving fish encounter differ greatly from free-flowing rivers. Many of the environmental changes that occur in a reservoir (altered water temperature and transparency, decreased flow velocities, increased predation) can reduce survival. Upon reaching the dam, downstream-migrating fish may suffer increased mortality as they pass through themore » turbines, spillways and other bypasses, or turbulent tailraces. Downstream from the dam, insufficient environmental flow releases may slow downstream fish passage rates or decrease survival. There is a need to refine our understanding of the relative importance of causative factors that contribute to turbine passage mortality (e.g., strike, pressure changes, turbulence) so that turbine design efforts can focus on mitigating the most damaging components. Further, present knowledge of the effectiveness of turbine improvements is based on studies of only a few species (mainly salmon and American shad). These data may not be representative of turbine passage effects for the hundreds of other fish species that are susceptible to downstream passage at hydroelectric projects. For example, there are over 900 species of fish in the United States. In Brazil there are an estimated 3,000 freshwater fish species, of which 30% are believed to be migratory (Viana et al. 2011). Worldwide, there are some 14,000 freshwater fish species (Magurran 2009), of which significant numbers are susceptible to hydropower impacts. By comparison, in a compilation of fish entrainment and turbine survival studies from over 100 hydroelectric projects in the United States, Winchell et al. (2000) found useful turbine passage survival data for only 30 species. Tests of advanced hydropower turbines have been limited to seven species - Chinook and coho salmon, rainbow trout, alewife, eel, smallmouth bass, and white sturgeon. We are investigating possible approaches for extending experimental results from the few tested fish species to predict turbine passage survival of other, untested species (Cada and Richmond 2011). In this report, we define the causes of injury and mortality to fish tested in laboratory and field studies, based on fish body shape and size, internal and external morphology, and physiology. We have begun to group the large numbers of unstudied species into a small number of categories, e.g., based on phylogenetic relationships or ecological similarities (guilds), so that subsequent studies of a few representative species (potentially including species-specific Biological Index Testing) would yield useful information about the overall fish community. This initial effort focused on modifying approaches that are used in the environmental toxicology field to estimate the toxicity of substances to untested species. Such techniques as the development of species sensitivity distributions (SSDs) and Interspecies Correlation Estimation (ICE) models rely on a considerable amount of data to establish the species-toxicity relationships that can be extended to other organisms. There are far fewer studies of turbine passage stresses from which to derive the turbine passage equivalent of LC{sub 50} values. Whereas the SSD and ICE approaches are useful analogues to predicting turbine passage injury and mortality, too few data are available to support their application without some form of modification or simplification. In this report we explore the potential application of a newer, related technique, the Traits-Based Assessment (TBA), to the prediction of downstream passage mortality at hydropower projects.« less
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Kornecki, Martin; Strube, Jochen
2018-03-16
Productivity improvements of mammalian cell culture in the production of recombinant proteins have been made by optimizing cell lines, media, and process operation. This led to enhanced titers and process robustness without increasing the cost of the upstream processing (USP); however, a downstream bottleneck remains. In terms of process control improvement, the process analytical technology (PAT) initiative, initiated by the American Food and Drug Administration (FDA), aims to measure, analyze, monitor, and ultimately control all important attributes of a bioprocess. Especially, spectroscopic methods such as Raman or near-infrared spectroscopy enable one to meet these analytical requirements, preferably in-situ. In combination with chemometric techniques like partial least square (PLS) or principal component analysis (PCA), it is possible to generate soft sensors, which estimate process variables based on process and measurement models for the enhanced control of bioprocesses. Macroscopic kinetic models can be used to simulate cell metabolism. These models are able to enhance the process understanding by predicting the dynamic of cells during cultivation. In this article, in-situ turbidity (transmission, 880 nm) and ex-situ Raman spectroscopy (785 nm) measurements are combined with an offline macroscopic Monod kinetic model in order to predict substrate concentrations. Experimental data of Chinese hamster ovary cultivations in bioreactors show a sufficiently linear correlation (R² ≥ 0.97) between turbidity and total cell concentration. PLS regression of Raman spectra generates a prediction model, which was validated via offline viable cell concentration measurement (RMSE ≤ 13.82, R² ≥ 0.92). Based on these measurements, the macroscopic Monod model can be used to determine different process attributes, e.g., glucose concentration. In consequence, it is possible to approximately calculate (R² ≥ 0.96) glucose concentration based on online cell concentration measurements using turbidity or Raman spectroscopy. Future approaches will use these online substrate concentration measurements with turbidity and Raman measurements, in combination with the kinetic model, in order to control the bioprocess in terms of feeding strategies, by employing an open platform communication (OPC) network-either in fed-batch or perfusion mode, integrated into a continuous operation of upstream and downstream.
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Kornecki, Martin; Strube, Jochen
2018-01-01
Productivity improvements of mammalian cell culture in the production of recombinant proteins have been made by optimizing cell lines, media, and process operation. This led to enhanced titers and process robustness without increasing the cost of the upstream processing (USP); however, a downstream bottleneck remains. In terms of process control improvement, the process analytical technology (PAT) initiative, initiated by the American Food and Drug Administration (FDA), aims to measure, analyze, monitor, and ultimately control all important attributes of a bioprocess. Especially, spectroscopic methods such as Raman or near-infrared spectroscopy enable one to meet these analytical requirements, preferably in-situ. In combination with chemometric techniques like partial least square (PLS) or principal component analysis (PCA), it is possible to generate soft sensors, which estimate process variables based on process and measurement models for the enhanced control of bioprocesses. Macroscopic kinetic models can be used to simulate cell metabolism. These models are able to enhance the process understanding by predicting the dynamic of cells during cultivation. In this article, in-situ turbidity (transmission, 880 nm) and ex-situ Raman spectroscopy (785 nm) measurements are combined with an offline macroscopic Monod kinetic model in order to predict substrate concentrations. Experimental data of Chinese hamster ovary cultivations in bioreactors show a sufficiently linear correlation (R2 ≥ 0.97) between turbidity and total cell concentration. PLS regression of Raman spectra generates a prediction model, which was validated via offline viable cell concentration measurement (RMSE ≤ 13.82, R2 ≥ 0.92). Based on these measurements, the macroscopic Monod model can be used to determine different process attributes, e.g., glucose concentration. In consequence, it is possible to approximately calculate (R2 ≥ 0.96) glucose concentration based on online cell concentration measurements using turbidity or Raman spectroscopy. Future approaches will use these online substrate concentration measurements with turbidity and Raman measurements, in combination with the kinetic model, in order to control the bioprocess in terms of feeding strategies, by employing an open platform communication (OPC) network—either in fed-batch or perfusion mode, integrated into a continuous operation of upstream and downstream. PMID:29547557
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Liu, Yue; Cui, Xinlong; Sun, Yu-E; Yang, Xuli; Ni, Kun; Zhou, Yu; Ma, Zhengliang; Gu, Xiaoping
2014-06-01
N-methyl-D-aspartate receptor (NMDARs)-dependent central sensitization plays an important role in cancer pain. Binding of NMDAR subunit 2B (NR2B) by postsynaptic density protein-95 (PSD-95) can couple NMDAR activity to intracellular enzymes, such as neuronal nitric oxide synthase (nNOS), facilitate downstream signaling pathways, and modulate NMDAR stability, contributing to synaptic plasticity. In this study, we investigated whether perturbing the specific interaction between spinal NR2B-containing NMDAR and PSD-95, using a peptide-mimetic strategy, could attenuate bone cancer-related pain behaviors. Osteosarcoma cells were implanted into the intramedullary space of the right femurs of C3H/HeJ mice to induce progressive bone cancer-related pain behaviors. Western blotting was applied to examine the expression of spinal phospho-Tyr1472 NR2B, nNOS, and PSD-95. We further investigated the effects of intrathecal injection of the mimetic peptide Myr-NR2B9c, which competitively disrupts the interaction between PSD-95 and NR2B, on nociceptive behaviors and on the upregulation of phospho-Tyr1472 NR2B, nNOS, and PSD-95 associated with bone cancer pain in the spinal cord. Inoculation of osteosarcoma cells induced progressive bone cancer pain and resulted in a significant upregulation of phospho-Tyr1472 NR2B, nNOS, and PSD-95. Intrathecal administration of Myr-NR2B9c attenuated bone cancer-evoked mechanical allodynia, thermal hyperalgesia, and reduced spinal phospho-Tyr1472 NR2B, nNOS, and PSD-95 expression. Intrathecal administration of Myr-NR2B9c reduced bone cancer pain. Internalization of spinal NR2B and dissociation NR2B-containing NMDARs activation from downstream nNOS signaling may contribute to the analgesic effects of Myr-NR2B9c. This approach may circumvent the negative consequences associated with blocking NMDARs, and may be a novel strategy for the treatment of bone cancer pain.
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Spatial bedrock erosion distribution in a natural gorge
NASA Astrophysics Data System (ADS)
Beer, A. R.; Turowski, J. M.; Kirchner, J. W.
2015-12-01
Quantitative analysis of morphological evolution both in terrestrial and planetary landscapes is of increasing interest in the geosciences. In mountainous regions, bedrock channel formation as a consequence of the interaction of uplift and erosion processes is fundamental for the entire surface evolution. Hence, the accurate description of bedrock channel development is important for landscape modelling. To verify existing concepts developed in the lab and to analyse how in situ channel erosion rates depend on the interrelations of discharge, sediment transport and topography, there is a need of highly resolved topographic field data. We analyse bedrock erosion over two years in a bedrock gorge downstream of the Gorner glacier above the town of Zermatt, Switzerland. At the study site, the Gornera stream cuts through a roche moutonnée in serpentine rock of 25m length, 5m width and 8m depth. We surveyed bedrock erosion rates using repeat terrestrial laser scanning (TLS) with an average point spacing of 5mm. Bedrock erosion rates in direction of the individual surface normals were studied directly on the scanned point clouds applying the M3C2 algorithm (Lague et al., 2013, ISPRS). The surveyed erosion patterns were compared to a simple stream erosivity visualisation obtained from painted bedrock sections at the study location. Spatially distributed erosion rates on bedrock surfaces based on millions of scan points allow deduction of millimeter-scale mean annual values of lateral erosion, incision and downstream erosion on protruding streambed surfaces. The erosion rate on a specific surface point is shown to depend on the position of this surface point in the channel's cross section, its height above the streambed and its spatial orientation to the streamflow. Abrasion by impacting bedload was likely the spatially dominant erosion process, as confirmed by the observed patterns along the painted bedrock sections. However, a single plucking event accounted for the half of the total eroded material. Our results demonstrate the practicability of TLS for highly resolved spatio-temporal erosion monitoring in the field and quantitatively confirm concepts of spatially varying erosion rates based current thinking. Furthermore, we introduce an easy-to-apply method for qualitative spatial erosion detection by paint.
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Chiang-Ni, Chuan; Tsou, Chih-Cheng; Lin, Yee-Shin; Chuang, Woei-Jer; Lin, Ming-T; Liu, Ching-Chuan; Wu, Jiunn-Jong
2008-12-31
CovR/S is an important two component regulatory system, which regulates about 15% of the gene expression in Streptococcus pyogenes. The covR/S locus was identified as an operon generating an RNA transcript around 2.5-kb in size. In this study, we found the covR/S operon produced three RNA transcripts (around 2.5-, 1.0-, and 0.8-kb in size). Using RNA transcriptional terminator sequence prediction and transcriptional terminator analysis, we identified two atypical rho-independent terminator sequences downstream of the covR gene and showed these terminator sequences terminate RNA transcription efficiently. These results indicate that covR/S operon generates covR/S transcript and monocistronic covR transcripts.
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Enhanced performance of a filter-sensor system.
Sasaki, Isao; Josowicz, Mira; Janata, Jirí; Glezer, Ari
2006-06-01
In this paper are addressed two important, but seemingly unrelated issues: long term performance of a gas sensing array and performance of an air purification unit. It is shown that when considered together, the system can be regarded as a "smart filter". The enhancement is achieved by periodic differential sampling and measurement of the "upstream" and "downstream" gases of a filter. The correctly functioning filter supplies the "zero gas" from the downstream for the continuous sensor baseline correction. A key element in this scheme is the synthetic jet that delivers well-defined pulses of the two gases. The deterioration of the performance of the "smart filter" can be diagnosed from the response pattern of the sensor. The approach has been demonstrated on removal/sensing of ammonia gas from air.
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The Prevention of Ice Formation on Gasoline Tank Vents
NASA Technical Reports Server (NTRS)
Theodorsen, Theodore; Clay, William C
1931-01-01
This investigation was conducted in the refrigerated wind tunnel at the Langley Memorial Aeronautical Laboratory, Langley Field, Va., to determine a suitable method for preventing the formation of ice on the vents of airplane gasoline tanks. Tests were made on a variety of vent forms arranged in a number of different orientations relative to the direction of the air stream. Both the size of the tube and its orientation were found to be of great importance. Small tubes, under equal circumstances, were found to freeze over far more rapidly than large ones. Tubes pointing downstream, or shielded in other ways, appear to be perfectly immune against this hazard. A tube 3/4 inch in diameter with the opening pointing downstream is finally recommended as being the safest choice of gas tank vent.
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Chatterjee, Moniya; Das, Sampa
2013-01-01
Reactive oxygen species are known to play pivotal roles in pathogen perception, recognition and downstream defense signaling. But, how these redox alarms coordinate in planta into a defensive network is still intangible. Present study illustrates the role of Fusarium oxysporum f.sp ciceri Race1 (Foc1) induced redox responsive transcripts in regulating downstream defense signaling in chickpea. Confocal microscopic studies highlighted pathogen invasion and colonization accompanied by tissue damage and deposition of callose degraded products at the xylem vessels of infected roots of chickpea plants. Such depositions led to the clogging of xylem vessels in compatible hosts while the resistant plants were devoid of such obstructions. Lipid peroxidation assays also indicated fungal induced membrane injury. Cell shrinkage and gradual nuclear adpression appeared as interesting features marking fungal ingress. Quantitative real time polymerase chain reaction exhibited differential expression patterns of redox regulators, cellular transporters and transcription factors during Foc1 progression. Network analysis showed redox regulators, cellular transporters and transcription factors to coordinate into a well orchestrated defensive network with sugars acting as internal signal modulators. Respiratory burst oxidase homologue, cationic peroxidase, vacuolar sorting receptor, polyol transporter, sucrose synthase, and zinc finger domain containing transcription factor appeared as key molecular candidates controlling important hubs of the defense network. Functional characterization of these hub controllers may prove to be promising in understanding chickpea–Foc1 interaction and developing the case study as a model for looking into the complexities of wilt diseases of other important crop legumes. PMID:24058463
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confFuse: High-Confidence Fusion Gene Detection across Tumor Entities.
Huang, Zhiqin; Jones, David T W; Wu, Yonghe; Lichter, Peter; Zapatka, Marc
2017-01-01
Background: Fusion genes play an important role in the tumorigenesis of many cancers. Next-generation sequencing (NGS) technologies have been successfully applied in fusion gene detection for the last several years, and a number of NGS-based tools have been developed for identifying fusion genes during this period. Most fusion gene detection tools based on RNA-seq data report a large number of candidates (mostly false positives), making it hard to prioritize candidates for experimental validation and further analysis. Selection of reliable fusion genes for downstream analysis becomes very important in cancer research. We therefore developed confFuse, a scoring algorithm to reliably select high-confidence fusion genes which are likely to be biologically relevant. Results: confFuse takes multiple parameters into account in order to assign each fusion candidate a confidence score, of which score ≥8 indicates high-confidence fusion gene predictions. These parameters were manually curated based on our experience and on certain structural motifs of fusion genes. Compared with alternative tools, based on 96 published RNA-seq samples from different tumor entities, our method can significantly reduce the number of fusion candidates (301 high-confidence from 8,083 total predicted fusion genes) and keep high detection accuracy (recovery rate 85.7%). Validation of 18 novel, high-confidence fusions detected in three breast tumor samples resulted in a 100% validation rate. Conclusions: confFuse is a novel downstream filtering method that allows selection of highly reliable fusion gene candidates for further downstream analysis and experimental validations. confFuse is available at https://github.com/Zhiqin-HUANG/confFuse.
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Indirect Reciprocity; A Field Experiment.
van Apeldoorn, Jacobien; Schram, Arthur
2016-01-01
Indirect reciprocity involves cooperative acts towards strangers, either in response to their kindness to third parties (downstream) or after receiving kindness from others oneself (upstream). It is considered to be important for the evolution of cooperative behavior amongst humans. Though it has been widely studied theoretically, the empirical evidence of indirect reciprocity has thus far been limited and based solely on behavior in laboratory experiments. We provide evidence from an online environment where members can repeatedly ask and offer services to each other, free of charge. For the purpose of this study we created several new member profiles, which differ only in terms of their serving history. We then sent out a large number of service requests to different members from all over the world. We observe that a service request is more likely to be rewarded for those with a profile history of offering the service (to third parties) in the past. This provides clear evidence of (downstream) indirect reciprocity. We find no support for upstream indirect reciprocity (in this case, rewarding the service request after having previously received the service from third parties), however. Our evidence of downstream indirect reciprocity cannot be attributed to reputational effects concerning one's trustworthiness as a service user.
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Indirect Reciprocity; A Field Experiment
van Apeldoorn, Jacobien; Schram, Arthur
2016-01-01
Indirect reciprocity involves cooperative acts towards strangers, either in response to their kindness to third parties (downstream) or after receiving kindness from others oneself (upstream). It is considered to be important for the evolution of cooperative behavior amongst humans. Though it has been widely studied theoretically, the empirical evidence of indirect reciprocity has thus far been limited and based solely on behavior in laboratory experiments. We provide evidence from an online environment where members can repeatedly ask and offer services to each other, free of charge. For the purpose of this study we created several new member profiles, which differ only in terms of their serving history. We then sent out a large number of service requests to different members from all over the world. We observe that a service request is more likely to be rewarded for those with a profile history of offering the service (to third parties) in the past. This provides clear evidence of (downstream) indirect reciprocity. We find no support for upstream indirect reciprocity (in this case, rewarding the service request after having previously received the service from third parties), however. Our evidence of downstream indirect reciprocity cannot be attributed to reputational effects concerning one’s trustworthiness as a service user. PMID:27043712
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Baeza, A; Corbacho, J A; Guillén, J; Salas, A; Mora, J C
2011-05-01
The present work studied the radioacitivity impact of a coal-fired power plant (CFPP), a NORM industry, on the water of the Regallo river which the plant uses for cooling. Downstream, this river passes through an important irrigated farming area, and it is a tributary of the Ebro, one of Spain's largest rivers. Although no alteration of the (210)Po or (232)Th content was detected, the (234,238)U and (226)Ra contents of the water were significantly greater immediately below CFPP's discharge point. The (226)Ra concentration decreased progressively downstream from the discharge point, but the uranium content increased significantly again at two sampling points 8 km downstream from the CFPP's effluent. This suggested the presence of another, unexpected uranium source term different from the CFPP. The input from this second uranium source term was even greater than that from the CFPP. Different hypotheses were tested (a reservoir used for irrigation, remobilization from sediments, and the effect of fertilizers used in the area), with it finally being demonstrated that the source was the fertilizers used in the adjacent farming areas. Copyright © 2011 Elsevier Ltd. All rights reserved.
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Novel Strategies for Upstream and Downstream Processing of Tannin Acyl Hydrolase
Rodríguez-Durán, Luis V.; Valdivia-Urdiales, Blanca; Contreras-Esquivel, Juan C.; Rodríguez-Herrera, Raúl; Aguilar, Cristóbal N.
2011-01-01
Tannin acyl hydrolase also referred as tannase is an enzyme with important applications in several science and technology fields. Due to its hydrolytic and synthetic properties, tannase could be used to reduce the negative effects of tannins in beverages, food, feed, and tannery effluents, for the production of gallic acid from tannin-rich materials, the elucidation of tannin structure, and the synthesis of gallic acid esters in nonaqueous media. However, industrial applications of tannase are still very limited due to its high production cost. Thus, there is a growing interest in the production, recovery, and purification of this enzyme. Recently, there have been published a number of papers on the improvement of upstream and downstream processing of the enzyme. These papers dealt with the search for new tannase producing microorganisms, the application of novel fermentation systems, optimization of culture conditions, the production of the enzyme by recombinant microorganism, and the design of efficient protocols for tannase recovery and purification. The present work reviews the state of the art of basic and biotechnological aspects of tannin acyl hydrolase, focusing on the recent advances in the upstream and downstream processing of the enzyme. PMID:21941633
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Peng, C.-H.; Department of Nursing, Hungkuang University, Sha Lu, Taichung, Taiwan; Tseng, T.-H.
In our previous study, penta-acetyl geniposide ((AC){sub 5}GP) is suggested to induce tumor cell apoptosis through the specific activation of PKC{delta}. However, the downstream signal pathway of PKC{delta} has not yet been investigated. It was shown that JNK may play an important role in the regulation of apoptosis and could be a possible downstream signal of PKC{delta} isoforms. In the present study, we investigate whether JNK is involved in (AC){sub 5}GP induced apoptosis. The result reveals that (AC){sub 5}GP induces JNK activation and c-Jun phosphorylation thus stimulating the expression of Fas-L and Fas. Using SP600125 to block JNK activation showsmore » that (AC){sub 5}GP-mediated apoptosis and related proteins expression are attenuated. Furthermore, we find that the (AC){sub 5}GP induces apoptosis through the activation of JNK/Jun/Fas L/Fas/caspase 8/caspase 3, a mitochondria-independent pathway. The JNK pathway is suggested to be the downstream signal of PKC{delta}, since rottlerin impedes (AC){sub 5}GP-induced JNK activation. Therefore, (AC){sub 5}GP mediates cell death via activation of PKC{delta}/JNK/FasL cascade signaling.« less
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Research Challenges And Opportunities To Enhance Ecological Functions In Forested Wetlands
John A. Stanturf; J. Steven Meadows
1994-01-01
Protecting wetland values and functions are important goals for forest managers. Value and function are easy terms to confuse, but they are not interchangeable. Societal values are directly and indirectly associated with ecological functions. For example, forested wetlands may suppress flooding downstream, which is a value. Floodplain forests store water, impede...
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The Impact of Urban Development in the Arid Zone and its Management.
NASA Astrophysics Data System (ADS)
Gat, J. R.
2002-05-01
From the experience in humid and semi-arid settings, the immediate impact of urbanization on the hydrological system is the interference with the natural direct infiltration pathways, resulting in a decrease of groundwater recharge as well as the possibility of surface flooding. In contrast, in the arid environment the limited rain amounts and number of rain events makes the contribution of rain of marginal importance in the city's water balance. The major impact of urbanization in the arid zone is the continuous excess of discharge of treated or untreated sewage or water spills, originating from the import of water to the city's water supply. Their effect can be advantageous if properly channeled. On the other hand, the polluting potential of these water excesses as well as the possibility of mobilizing stored salinity in the downstream locations is of concern, if the natural drainage network and its remediation capacity becomes overloaded. Further, since the arid zone hydrological cycle depends naturally on a discontinuous and episodal groundwater recharge pattern, the new situation requires the re-assessment of the eco-hydrological patterns in the downstream location.
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Chaplin, Jeffrey J.
2005-01-01
More than 100 years of anthracite coal mining has changed surface- and ground-water hydrology and contaminated streams draining the Southern Anthracite Coal Field in east-central Pennsylvania. Bear Creek drains the western prong of the Southern Anthracite Coal Field and is affected by metals in drainage from abandoned mines and streamwater losses. Total Maximum Daily Loads (TMDL) developed for dissolved iron of about 5 lb/d (pounds per day) commonly are exceeded in the reach downstream of mine discharges. Restoration of Bear Creek using aerobic ponds to passively remove iron in abandoned mine drainage is under consideration (2004) by the Dauphin County Conservation District. This report, prepared in cooperation with the Dauphin County Conservation District, evaluates chemical and hydrologic data collected in Bear Creek and its receiving waters prior to implementation of mine-drainage treatment. The data collected represent the type of baseline information needed for documentation of water-quality changes following passive treatment of mine drainage in Pennsylvania and in other similar hydrogeologic settings. Seven surface-water sites on Bear Creek and two mine discharges were monitored for nearly three years to characterize the chemistry and hydrology of the following: (1) Bear Creek upstream of the mine discharges (BC-UMD), (2) water draining from the Lykens-Williamstown Mine Pool at the Lykens Water-Level Tunnel (LWLT) and Lykens Drift (LD) discharges, (3) Bear Creek after mixing with the mine discharges (BC-DMD), and (4) Bear Creek prior to mixing with Wiconisco Creek (BCM). Two sites on Wiconisco Creek, upstream and downstream of Bear Creek (WC-UBC and WC-DBC, respectively), were selected to evaluate changes in streamflow and water quality upon mixing with Bear Creek. During periods of below-normal precipitation, streamwater loss was commonly 100 percent upstream of site BC-UMD (streamflow range = 0 to 9.7 ft3/s (cubic feet per second)) but no loss was detected downstream owing to sustained mine water drainage from the Lykens Water-Level Tunnel (range = 0.41 to 3.7 ft3/s), Lykens Drift (range = 0.40 to 6.1 ft3/s), and diffuse zones of seepage. Collectively, mine water inputs contributed about 84 percent of base flow and 53 percent of stormflow measured in the downstream reach. An option under consideration by the Dauphin County Conservation District for treatment of the discharge from the LWLT requires the source of the discharge to be captured and rerouted downstream, bypassing approximately 1,000 feet of stream channel. Because streamwater loss upstream of the tunnel was commonly 100 percent, rerouting the discharge from the LWLT may extend the reach of Bear Creek that is subject to dryness. Differences in the chemistry of water discharging from the LWLT compared to the LD suggest that the flow path through the Lykens-Williamstown Mine Pool to each mine discharge is unique. The LWLT is marginally alkaline (median net acid neutralizing capacity (ANC) = 9 mg/L (milligrams per liter) as CaCO3; median pH = 5.9), commonly becomes acidic (minimum net ANC = -74 mg/L as CaCO3) at low flow, and may benefit from alkaline amendments prior to passive treatment. Water discharging from the LD provides excess ANC (median net ANC = 123 mg/L as CaCO3; median pH = 6.5) to the downstream reach and is nearly anoxic at its source (median dissolved oxygen = 0.5 mg/L). Low dissolved oxygen water with relatively high ANC and metals concentrations discharging from the LD is characteristic of a deeper flow path and longer residence time within the mine pool than the more acidic, oxygenated water discharging from the LWLT. TMDLs for iron have been developed for dissolved species only. Consequently, distinguishing between dissolved and suspended iron in Bear Creek is important for evaluating water-quality improvement through TMDL attainment. Median total iron concentration increased from 550 mg/L (micrograms per liter) at site BC-UM
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Association of Cost Sharing With Mental Health Care Use, Involuntary Commitment, and Acute Care
Schachar, Eli B.; Beekman, Aartjan T. F.; Janssen, Richard T. J. M.; Jeurissen, Patrick P. T.
2017-01-01
Importance A higher out-of-pocket price for mental health care may lead not only to cost savings but also to negative downstream consequences. Objective To examine the association of higher patient cost sharing with mental health care use and downstream effects, such as involuntary commitment and acute mental health care use. Design, Setting, and Participants This difference-in-differences study compared changes in mental health care use by adults, who experienced an increase in cost sharing, with changes in youths, who did not experience the increase and thus formed a control group. The study examined all 2 780 558 treatment records opened from January 1, 2010, through December 31, 2012, by 110 organizations that provide specialist mental health care in the Netherlands. Data analysis was performed from January 18, 2016, to May 9, 2017. Exposures On January 1, 2012, the Dutch national government increased the out-of-pocket price of mental health services for adults by up to €200 (US$226) per year for outpatient treatment and €150 (US$169) per month for inpatient treatment. Main Outcomes and Measures The number of treatment records opened each day in regular specialist mental health care, involuntary commitment, and acute mental health care, and annual specialist mental health care spending. Results This study included 1 448 541 treatment records opened from 2010 to 2012 (mean [SD] age, 41.4 [16.7] years; 712 999 men and 735 542 women). The number of regular mental health care records opened for adults decreased abruptly and persistently by 13.4% (95% CI, −16.0% to −10.8%; P < .001) per day when cost sharing was increased in 2012. The decrease was substantial and significant for severe and mild disorders and larger in low-income than in high-income neighborhoods. Simultaneously, in 2012, daily record openings increased for involuntary commitment by 96.8% (95% CI, 87.7%-105.9%; P < .001) and for acute mental health care by 25.1% (95% CI, 20.8%-29.4%; P < .001). In contrast to our findings for adults, the use of regular care among youths increased slightly and the use of involuntary commitment and acute care decreased slightly after the reform. Overall, the cost-sharing reform was associated with estimated savings of €13.4 million (US$15.1 million). However, for adults with psychotic disorder or bipolar disorder, the additional costs of involuntary commitment and acute mental health care exceeded savings by €25.5 million (US$28.8 million). Conclusions and Relevance Higher cost sharing for seriously ill and low-income patients could discourage treatment of vulnerable populations and create substantial downstream costs. PMID:28724129
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NASA Astrophysics Data System (ADS)
Frey, Karen E.; Sobczak, William V.; Mann, Paul J.; Holmes, Robert M.
2016-04-01
The Kolyma River in northeast Siberia is among the six largest Arctic rivers and drains a region underlain by vast deposits of Holocene-aged peat and Pleistocene-aged loess known as yedoma, most of which is currently stored in ice-rich permafrost throughout the region. These peat and yedoma deposits are important sources of dissolved organic matter (DOM) to inland waters that in turn play a significant role in the transport and ultimate remineralization of organic carbon to CO2 and CH4 along the terrestrial flow-path continuum. The turnover and fate of terrigenous DOM during offshore transport largely depends upon the composition and amount of carbon released to inland and coastal waters. Here, we measured the ultraviolet-visible optical properties of chromophoric DOM (CDOM) from a geographically extensive collection of waters spanning soil pore waters, streams, rivers, and the Kolyma River mainstem throughout a ˜ 250 km transect of the northern Kolyma River basin. During the period of study, CDOM absorption coefficients were found to be robust proxies for the concentration of DOM, whereas additional CDOM parameters such as spectral slopes (S) were found to be useful indicators of DOM quality along the flow path. In particular, the spectral slope ratio (SR) of CDOM demonstrated statistically significant differences between all four water types and tracked changes in the concentration of bioavailable DOC, suggesting that this parameter may be suitable for clearly discriminating shifts in organic matter characteristics among water types along the full flow-path continuum across this landscape. However, despite our observations of downstream shifts in DOM composition, we found a relatively constant proportion of DOC that was bioavailable ( ˜ 3-6 % of total DOC) regardless of relative water residence time along the flow path. This may be a consequence of two potential scenarios allowing for continual processing of organic material within the system, namely (a) aquatic microorganisms are acclimating to a downstream shift in DOM composition and/or (b) photodegradation is continually generating labile DOM for continued microbial processing of DOM along the flow-path continuum. Without such processes, we would otherwise expect to see a declining fraction of bioavailable DOC downstream with increasing residence time of water in the system. With ongoing and future permafrost degradation, peat and yedoma deposits throughout the northeast Siberian region will become more hydrologically active, providing greater amounts of DOM to fluvial networks and ultimately to the Arctic Ocean. The ability to rapidly and comprehensively monitor shifts in the quantity and quality of DOM across the landscape is therefore critical for understanding potential future feedbacks within the Arctic carbon cycle.
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Risk Perception Analysis Related To Existing Dams In Italy
NASA Astrophysics Data System (ADS)
Solimene, Pellegrino
2013-04-01
In the first part of this work, the progress of Italian National Rules about dams design, construction and operation are presented to highlight the strong connection existing between the promulgation of new decrees, as a consequence of a dam accidents, and the necessity to prevent further loss of lives and goods downstream. Following the Gleno Dam failure (1923), a special Ministerial Committee wrote out the first Regulations and made the proposal to establish, within the High Council of Public Works, a special department that become soon the "Dam Service", with the tasks of control and supervision about construction and operation phases of the dams and their reservoirs. A different definition of tasks and the structure of Dam Service were provided in accordance with law n° 183/1989, which transferred all the technical services to the Office of the Prime Minister; the aim was to join the Dam Office with the Department for National Technical Services, with the objective of increasing the knowledge of the territory and promoting the study on flood propagation downstream in case of operations on bottom outlet or hypothetical dam-break. In fact, population living downstream is not ready to accept any amount of risk because has not a good knowledge of the efforts of experts involved in dam safety, both from the operators and from the safety Authority. So it's important to optimize all the activities usually performed in a dam safety program and improve the emergency planning as a response to people's primary needs and feeling about safety from Civil Protection Authority. In the second part of the work, a definition of risk is provided as the relationship existing between probability of occurrence and loss, setting out the range within to plan for prevention (risk mitigation), thanks to the qualitative assessment of the minimum safety level that is suited to assign funds to plan for Civil Protection (loss mitigation). The basic meaning of the reliability of a zoned earthfill dam is illustrated by defining the risk analysis during its construction and operation. A qualitative "Event Tree Analysis" makes clear with an example the probability of occurrence of the events triggered by an earthquake, and leads to a classification of the damage level. Finally, a System Dynamics (SD) approach is presented to investigate possibilities of a preventive planning in relationship to the risk, so that it's possible to establish shared procedures to achieve the correct management in any crisis phase. As a qualitative result of a SD application, figure 1 presents a flow-chart about a case study on the same dam so to illustrate the emergency planning in a step by step procedure according to the Regulations.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Gauntt, Randall O.; Mattie, Patrick D.; Bixler, Nathan E.
2014-02-01
This paper describes the knowledge advancements from the uncertainty analysis for the State-of- the-Art Reactor Consequence Analyses (SOARCA) unmitigated long-term station blackout accident scenario at the Peach Bottom Atomic Power Station. This work assessed key MELCOR and MELCOR Accident Consequence Code System, Version 2 (MACCS2) modeling uncertainties in an integrated fashion to quantify the relative importance of each uncertain input on potential accident progression, radiological releases, and off-site consequences. This quantitative uncertainty analysis provides measures of the effects on consequences, of each of the selected uncertain parameters both individually and in interaction with other parameters. The results measure the modelmore » response (e.g., variance in the output) to uncertainty in the selected input. Investigation into the important uncertain parameters in turn yields insights into important phenomena for accident progression and off-site consequences. This uncertainty analysis confirmed the known importance of some parameters, such as failure rate of the Safety Relief Valve in accident progression modeling and the dry deposition velocity in off-site consequence modeling. The analysis also revealed some new insights, such as dependent effect of cesium chemical form for different accident progressions. (auth)« less
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Gammons, C.H.; Nimick, D.A.; Parker, S.R.; Cleasby, T.E.; McCleskey, R. Blaine
2005-01-01
Three simultaneous 24-h samplings at three sites over a downstream pH gradient were conducted to examine diel fluctuations in heavy metal concentrations in Fisher Creek, a small mountain stream draining abandoned mine lands in Montana. Average pH values at the upstream (F1), middle (F2), and downstream (F3) monitoring stations were 3.31, 5.46, and 6.80, respectively. The downstream increase in pH resulted in precipitation of hydrous ferric oxide (HFO) and hydrous aluminum oxide (HAO) on the streambed. At F1 and F2, Fe showed strong diel cycles in dissolved concentration and Fe(II)/Fe(III) ratio; these cycles were attributed to daytime photoreduction of Fe(III) to Fe(II), reoxidation of Fe(II) to Fe(III), and temperature-dependent hydrolysis and precipitation of HFO. At the near-neutral downstream station, no evidence of Fe(III) photoreduction was observed, and suspended particles of HFO dominated the total Fe load. HFO precipitation rates between F2 and F3 were highest in the afternoon, due in part to reoxidation of a midday pulse of Fe2+ formed by photoreduction in the upper, acidic portions of the stream. Dissolved concentrations of Fe(II) and Cu decreased tenfold and 2.4-fold, respectively, during the day at F3. These changes were attributed to sorption onto fresh HFO surfaces. Results of surface complexation modeling showed good agreement between observed and predicted Cu concentrations at F3, but only when adsorption enthalpies were added to the thermodynamic database to take into account diel temperature variations. The field and modeling results illustrate that the degree to which trace metals adsorb onto actively forming HFO is strongly temperature dependent. This study is an example of how diel Fe cycles caused by redox and hydrolysis reactions can induce a diel cycle in a trace metal of toxicological importance in downstream waters. Copyright ?? 2005 Elsevier Ltd.
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Modeling the GLOF Hazard Process Chain at Imja Lake in the Nepal Himalaya
NASA Astrophysics Data System (ADS)
Lala, J.; McKinney, D. C.; Rounce, D.
2017-12-01
The Hindu Kush-Himalaya region contains more glacial ice than any other non-polar region on earth. Many glacial lakes in Nepal are held in place by natural moraine dams, which are inherently unstable. Avalanches or landslides entering glacial lakes can cause tsunami-like waves that can overtop the moraines and trigger glacial lake outburst floods (GLOF). Mass loss at the Imja glacier is the highest in the Mount Everest region, and contributes to the expansion of Imja Tsho, a lake with several villages downstream. A GLOF from the lake might destroy both property and human life, making an understanding of flood triggering processes beneficial for both the downstream villages and other GLOF-prone areas globally. The process chain for an avalanche-induced GLOF was modeled numerically. The volume and velocity of debris from avalanches entering various future lake extents were calculated using RAMMS. Resulting waves and downstream flooding were simulated using BASEMENT to evaluate erosion at the terminal moraine. Wave characteristics in BASEMENT were validated with empirical equations to ensure the proper transfer of momentum from the avalanche to the lake. Moraine erosion was determined for two geomorphologic scenarios: a site-specific scenario using field samples, and a worst-case scenario based on past literature. Both cases resulted in no flooding outside the river channel at downstream villages. Worst-case scenario geomorphology resulted in increased channelization of the lake outlet and some moraine erosion but no catastrophic collapse. Site-specific data yielded similar results but with even less erosion and downstream discharge. While the models confirmed that Imja Tsho is unlikely to produce a catastrophic GLOF in the near future, they also highlight the importance of continued monitoring of the lake. Furthermore, the ease and flexibility of these methods allows for their adoption by a wide range of stakeholders for modeling other high-risk lakes.
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NASA Astrophysics Data System (ADS)
Johnson, Matthew; Wilby, Robert
2015-04-01
Water temperature is a key water quality parameter and is critical to aquatic life Therefore, rising temperatures due to climate and environmental change will have major consequences for river biota. As such, it is important to understand the environmental controls of the thermal regime of rivers. The Loughborough University TEmperature Network (LUTEN) consists of a distributed network of 25 sites along 40 km of two rivers in the English Peak District, from their source to confluence. As a result, the network covers a range of hydrological, sedimentary, geomorphic and land-use conditions. At each site, air and water temperature have been recorded at a 15-minute resolution for over 4 years. Water temperature is spatially patchy and temporally variable in the monitored rivers. For example, the annual temperature range at Beresford Dale is over 18° C, whereas 8 km downstream it is less than 8° C. This heterogeneity leads to some sites being more vulnerable to future warming than others. The sensitivity of sites to climate was quantified by comparing the parameters of logistic regression models, constructed at each site, that relate water temperature to air temperature. These analyses, coupled with catchment modelling suggest that reaches that are surface-water dominated with minimal shade and relatively low water volumes are most susceptible to warming. Such reaches tended to occur at intermediate distances from rivers source in the monitored catchments. Reaches that were groundwater dominated had relatively stable thermal regimes, which were relatively unaffected by inter-annual changes in climatic conditions. Such areas could provide important thermal refuge to many organisms, which is supported by monitoring of the invertebrate community in the catchment. The phenology (i.e. timing of life events) of some species remained consistent between years in a river reach with a stable thermal regime, but changed markedly in other areas of the river. Consequently, areas of thermal refuge could be important in the context of future climate change, potentially maintaining populations of animals excluded from other parts of the river during hot summer months. International management strategies to mitigate rising temperatures tend to focus on the protection, enhancement or creation of riparian shade. Simple metrics derived from catchment landscape models, the heat capacity of water, and modelled solar radiation receipt, suggest that approximately 1 km of deep riparian shading is necessary to offset a 1° C rise in temperature in the monitored catchments. A similar value is likely to be obtained for similar sized rivers at similar latitudes. Trees would take 20 years to attain sufficient height to shade the necessary solar angles. However, 1 km of deep riparian shade will have substantial impacts on the hydrological and geomorphological functioning of the river, beyond simply altering the thermal regime. Consequently, successful management of rising water temperature in rivers will require catchment scale consideration, as part of an integrated management plan.
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Wildfire disturbance, erosion and sedimentation risks following the Waldo Canyon Fire in Colorado
NASA Astrophysics Data System (ADS)
Flint, K.; Kinoshita, A. M.; Chin, A.; Florsheim, J. L.; Nourbakhshbeidokhti, S.
2016-12-01
Wildfire is a landscape-scale disturbance that causes abrupt changes to hydrological responses and sediment flux during subsequent storms. Burning hillslope vegetation during wildfires induces changes to sediment supply and stream flow magnitude. Altered post-fire processes such as channel erosion and sedimentation or flooding enhance downstream hazards that may threaten human populations and physical aquatic habitat over various time scales. Using data from a small drainage basin (Williams Canyon, 4.7 km2) in the Colorado front range burned by the 2012 Waldo Fire as a case study, we investigate post-fire recovery and assess changes in fire-related risks to downstream areas. Our local ground-based precipitation, field measurements, terrestrial Light Detection and Ranging (LiDAR) scanning together with satellite-based remote sensing data (i.e. Landsat) provide a basis for time series analyses of reach-scale erosion and sedimentation response to rainfall patterns as vegetation patterns change following the wildfire. As a first step in quantifying the likelihood and consequences of specific risk scenarios, we examine changes in the combined probability of storm flows and post-fire erosion and sedimentation as vegetation recovers within the study watershed. We explore possible feedbacks and thresholds related to vegetation-hydrology-sediment interactions following wildfire under changing climate regimes. This information is needed to assist in post-fire management to promote sustainability of wildland fluvial systems.
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Cladière, Mathieu; Gasperi, Johnny; Lorgeoux, Catherine; Bonhomme, Céline; Rocher, Vincent; Tassin, Bruno
2013-05-01
This study evaluates the influence of a heavily urbanized area (Paris Metropolitan area), on receiving water contamination by both bisphenol A (BPA) and alkylphenol ethoxylate (APE) biodegradation product. The study began by investigating concentrations within urban sources. In addition to the more commonly studied wastewater treatment plant effluent, wet weather urban sources (including combined sewer overflows, urban runoff, and total atmospheric fallout) were considered. The initial results highlight a significant contamination of all urban sources (from a few nanograms per liter in atmospheric fallout to several micrograms per liter in the other sources) with clearly distinguishable distribution patterns. Secondly, concentration changes along the Seine River from upstream of the Paris Metropolitan area to downstream were investigated. While the concentrations of BPA and nonylphenoxy acetic acid (NP₁EC) increase substantially due to urban sources, the 4-nonylphenol concentrations remain homogeneous along the Seine. These results suggest a broad dissemination of 4-nonylphenol at the scale of the Seine River basin. Moreover, the relationship between pollutant concentrations and Seine River flow was assessed both upstream and downstream of the Paris conurbation. Consequently, a sharp decrease in dissolved NP1EC concentrations relative to Seine River flow underscores the influence of single-point urban pollution on Seine River contamination. Conversely, dissolved 4-nonylphenol concentrations serve to reinforce the hypothesis of its widespread presence at the Seine River basin scale.
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Kaltenbrunner, Oliver; Diaz, Luis; Hu, Xiaochun; Shearer, Michael
2016-07-08
Recently, continuous downstream processing has become a topic of discussion and analysis at conferences while no industrial applications of continuous downstream processing for biopharmaceutical manufacturing have been reported. There is significant potential to increase the productivity of a Protein A capture step by converting the operation to simulated moving bed (SMB) mode. In this mode, shorter columns are operated at higher process flow and corresponding short residence times. The ability to significantly shorten the product residence time during loading without appreciable capacity loss can dramatically increase productivity of the capture step and consequently reduce the amount of Protein A resin required in the process. Previous studies have not considered the physical limitations of how short columns can be packed and the flow rate limitations due to pressure drop of stacked columns. In this study, we are evaluating the process behavior of a continuous Protein A capture column cycling operation under the known pressure drop constraints of a compressible media. The results are compared to the same resin operated under traditional batch operating conditions. We analyze the optimum system design point for a range of feed concentrations, bed heights, and load residence times and determine achievable productivity for any feed concentration and any column bed height. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:938-948, 2016. © 2016 American Institute of Chemical Engineers.
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NSP-CAS Protein Complexes: Emerging Signaling Modules in Cancer.
Wallez, Yann; Mace, Peter D; Pasquale, Elena B; Riedl, Stefan J
2012-05-01
The CAS (CRK-associated substrate) family of adaptor proteins comprises 4 members, which share a conserved modular domain structure that enables multiple protein-protein interactions, leading to the assembly of intracellular signaling platforms. Besides their physiological role in signal transduction downstream of a variety of cell surface receptors, CAS proteins are also critical for oncogenic transformation and cancer cell malignancy through associations with a variety of regulatory proteins and downstream effectors. Among the regulatory partners, the 3 recently identified adaptor proteins constituting the NSP (novel SH2-containing protein) family avidly bind to the conserved carboxy-terminal focal adhesion-targeting (FAT) domain of CAS proteins. NSP proteins use an anomalous nucleotide exchange factor domain that lacks catalytic activity to form NSP-CAS signaling modules. Additionally, the NSP SH2 domain can link NSP-CAS signaling assemblies to tyrosine-phosphorylated cell surface receptors. NSP proteins can potentiate CAS function by affecting key CAS attributes such as expression levels, phosphorylation state, and subcellular localization, leading to effects on cell adhesion, migration, and invasion as well as cell growth. The consequences of these activities are well exemplified by the role that members of both families play in promoting breast cancer cell invasiveness and resistance to antiestrogens. In this review, we discuss the intriguing interplay between the NSP and CAS families, with a particular focus on cancer signaling networks.
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Morley, Wendy A; Seneff, Stephanie
2014-01-01
The number of sports-related concussions has been steadily rising in recent years. Diminished brain resilience syndrome is a term coined by the lead author to describe a particular physiological state of nutrient functional deficiency and disrupted homeostatic mechanisms leading to increased susceptibility to previously considered innocuous concussion. We discuss how modern day environmental toxicant exposure, along with major changes in our food supply and lifestyle practices, profoundly reduce the bioavailability of neuro-critical nutrients such that the normal processes of homeostatic balance and resilience are no longer functional. Their diminished capacity triggers physiological and biochemical 'work around' processes that result in undesirable downstream consequences. Exposure to certain environmental chemicals, particularly glyphosate, the active ingredient in the herbicide, Roundup(®), may disrupt the body's innate switching mechanism, which normally turns off the immune response to brain injury once danger has been removed. Deficiencies in serotonin, due to disruption of the shikimate pathway, may lead to impaired melatonin supply, which reduces the resiliency of the brain through reduced antioxidant capacity and alterations in the cerebrospinal fluid, reducing critical protective buffering mechanisms in impact trauma. Depletion of certain rare minerals, overuse of sunscreen and/or overprotection from sun exposure, as well as overindulgence in heavily processed, nutrient deficient foods, further compromise the brain's resilience. Modifications to lifestyle practices, if widely implemented, could significantly reduce this trend of neurological damage.
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Laser capture microdissection: should an ultraviolet or infrared laser be used?
Vandewoestyne, Mado; Goossens, Karen; Burvenich, Christian; Van Soom, Ann; Peelman, Luc; Deforce, Dieter
2013-08-15
Laser capture microdissection (LCM) is a well-established cell separation technique. It combines microscopy with laser beam technology and allows targeting of specific cells or tissue regions that need to be separated from others. Consequently, this biological material can be used for genome or transcriptome analyses. Appropriate methods of sample preparation, however, are crucial for the success of downstream molecular analysis. The aim of this study was to objectively compare the two main LCM systems, one based on an ultraviolet (UV) laser and the other based on an infrared (IR) laser, on different criteria ranging from user-friendliness to sample quality. The comparison was performed on two types of samples: peripheral blood mononuclear cells and blastocysts. The UV laser LCM system had several advantages over the IR laser LCM system. Not only does the UV system allow faster and more precise sample collection, but also the obtained samples-even single cell samples-can be used for DNA extraction and downstream polymerase chain reaction (PCR) applications. RNA-based applications are more challenging for both LCM systems. Although sufficient RNA can be extracted from as few as 10 cells for reverse transcription quantitative PCR (RT-qPCR) analysis, the low RNA quality should be taken into account when designing the RT-qPCR assays. Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.
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Cytotoxic 1-deoxysphingolipids are metabolized by a cytochrome P450-dependent pathway.
Alecu, Irina; Othman, Alaa; Penno, Anke; Saied, Essa M; Arenz, Christoph; von Eckardstein, Arnold; Hornemann, Thorsten
2017-01-01
The 1-deoxysphingolipids (1-deoxySLs) are atypical sphingolipids (SLs) that are formed when serine palmitoyltransferase condenses palmitoyl-CoA with alanine instead of serine during SL synthesis. The 1-deoxySLs are toxic to neurons and pancreatic β-cells. Pathologically elevated 1-deoxySLs cause the inherited neuropathy, hereditary sensory autonomic neuropathy type 1 (HSAN1), and are also found in T2D. Diabetic sensory polyneuropathy (DSN) and HSAN1 are clinically very similar, suggesting that 1-deoxySLs may be implicated in both pathologies. The 1-deoxySLs are considered to be dead-end metabolites, as they lack the C1-hydroxyl group, which is essential for the canonical degradation of SLs. Here, we report a previously unknown metabolic pathway, which is capable of degrading 1-deoxySLs. Using a variety of metabolic labeling approaches and high-resolution high-accuracy MS, we identified eight 1-deoxySL downstream metabolites, which appear to be formed by cytochrome P450 (CYP)4F enzymes. Comprehensive inhibition and induction of CYP4F enzymes blocked and stimulated, respectively, the formation of the downstream metabolites. Consequently, CYP4F enzymes might be novel therapeutic targets for the treatment of HSAN1 and DSN, as well as for the prevention of T2D. Copyright © 2017 by the American Society for Biochemistry and Molecular Biology, Inc.
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Brozinski, Jenny-Maria; Lahti, Marja; Oikari, Aimo; Kronberg, Leif
2011-06-01
The anti-inflammatory drug naproxen (NPX) has been found as a micropollutant in river water downstream the discharge points of wastewater treatment plants (WWTP). In this study, rainbow trout (Oncorhynchus mykiss) was exposed to NXP and the uptake and metabolism of the drug was studied. Following exposure through intraperitoneal injection (i.p., 0.5 mg NPX/100 g fish biomass) and through water (1.6 μg L(-1)), the bile was collected and analyzed with various LC-MS/MS methods. The identification of the formed metabolites in i.p. injected fish was based on the exact mass determinations by a time-of-flight mass analyzer (Q-TOF-MS) and on the studies of fragments and fragmentation patterns of precursor ions by an ion trap mass analyzer (IT-MS). No matter the exposure route, the main metabolites were found to be acyl glucuronides of NPX and of 6-O-desmethylnaproxen. Also, unmetabolized NPX was detected in the bile. The total bioconcentration factors (BCF(total-bile)) of NPX and the metabolites in the bile of fish exposed through water ranged from 500 to 2,300. The findings suggest that fish living downstream WWTPs may take up NPX and metabolize the compound. Consequently, NPX and its metabolites in bile can be used to monitor the exposure of fish to NPX.
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Gurvich, Olga L.; Näsvall, S. Joakim; Baranov, Pavel V.; Björk, Glenn R.; Atkins, John F.
2011-01-01
The bacterial pheL gene encodes the leader peptide for the phenylalanine biosynthetic operon. Translation of pheL mRNA controls transcription attenuation and, consequently, expression of the downstream pheA gene. Fifty-three unique pheL genes have been identified in sequenced genomes of the gamma subdivision. There are two groups of pheL genes, both of which are short and contain a run(s) of phenylalanine codons at an internal position. One group is somewhat diverse and features different termination and 5′-flanking codons. The other group, mostly restricted to Enterobacteria and including Escherichia coli pheL, has a conserved nucleotide sequence that ends with UUC_CCC_UGA. When these three codons in E. coli pheL mRNA are in the ribosomal E-, P- and A-sites, there is an unusually high level, 15%, of +1 ribosomal frameshifting due to features of the nascent peptide sequence that include the penultimate phenylalanine. This level increases to 60% with a natural, heterologous, nascent peptide stimulator. Nevertheless, studies with different tRNAPro mutants in Salmonella enterica suggest that frameshifting at the end of pheL does not influence expression of the downstream pheA. This finding of incidental, rather than utilized, frameshifting is cautionary for other studies of programmed frameshifting. PMID:21177642
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NASA Astrophysics Data System (ADS)
Spaliviero, Mathias
2003-06-01
The fluvial geomorphological development of the Tagliamento River and its flooding history is analysed using historical documents and maps, remote-sensed data and hydrological information. The river has been building a complex alluvial fan starting from the middle part of its alluvial course in the Venetia-Friuli alluvial plain. The riverbed is aggrading over its entire braided length. The transition from braiding to meandering near Madrisio has shifted downstream where the river width determined by the dikes becomes narrower, causing major problems. The flood hazard concentrates at those places and zones where flooding occurred during historical times. Prior to the agrarian and industrial revolution, land use was adjusted to the flooding regime of the river. Subsequent land-use pressure led to a confinement of the river by dikes to such an extent that the flood risk in the floodplain downstream of Madrisio has increased consistently, and represents nowadays a major territorial planning issue. The planned retention basins upstream of the middle Tagliamento will alleviate the problem, but not solve it in the medium and long term. Therefore, fluvial corridors in the lower-middle parts (from Pinzano to the sea) have been identified on the basis of the flooding history in relation to fluvial development during historical times. The result should be used for hydraulic simulation studies and land-use planning.
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Effects of dams on downstream molluscan predator-prey interactions in the Colorado River estuary.
Smith, Jansen A; Handley, John C; Dietl, Gregory P
2018-05-30
River systems worldwide have been modified for human use and the downstream ecological consequences are often poorly understood. In the Colorado River estuary, where upstream water diversions have limited freshwater input during the last century, mollusc remains from the last several hundred years suggest widespread ecological change. The once abundant clam Mulinia modesta has undergone population declines of approximately 94% and populations of predators relying on this species as a food source have probably declined, switched to alternative prey species or both. We distinguish between the first two hypotheses using a null model of predation preference to test whether M. modesta was preyed upon selectively by the naticid snail, Neverita reclusiana , along the estuary's past salinity gradient. To evaluate the third hypothesis, we estimate available prey biomass today and in the past, assuming prey were a limiting resource. Data on the frequency of drill holes-identifiable traces of naticid predation on prey shells-showed several species, including M. modesta , were preferred prey. Neverita reclusiana was probably able to switch prey. Available prey biomass also declined, suggesting the N. reclusiana population probably also declined. These results indicate a substantial change to the structure of the benthic food web. Given the global scale of water management, such changes have probably also occurred in many of the world's estuaries. © 2018 The Author(s).
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Hall, Roland I.; Wolfe, Brent B.; Wiklund, Johan A.; Edwards, Thomas W. D.; Farwell, Andrea J.; Dixon, D. George
2012-01-01
Background The extent to which Alberta oil sands mining and upgrading operations have enhanced delivery of bitumen-derived contaminants via the Athabasca River and atmosphere to the Peace-Athabasca Delta (200 km to the north) is a pivotal question that has generated national and international concern. Accounts of rare health disorders in residents of Fort Chipewyan and deformed fish in downstream ecosystems provided impetus for several recent expert-panel assessments regarding the societal and environmental consequences of this multi-billion-dollar industry. Deciphering relative contributions of natural versus industrial processes on downstream supply of polycyclic aromatic compounds (PACs) has been identified as a critical knowledge gap. But, this remains a formidable scientific challenge because loading from natural processes remains unknown. And, industrial activity occurs in the same locations as the natural bitumen deposits, which potentially confounds contemporary upstream-downstream comparisons of contaminant levels. Methods/Principal Findings Based on analyses of lake sediment cores, we provide evidence that the Athabasca Delta has been a natural repository of PACs carried by the Athabasca River for at least the past two centuries. We detect no measureable increase in the concentration and proportion of river-transported bitumen-associated indicator PACs in sediments deposited in a flood-prone lake since onset of oil sands development. Results also reveal no evidence that industrial activity has contributed measurably to sedimentary concentration of PACs supplied by atmospheric transport. Conclusions/Significance Findings suggest that natural erosion of exposed bitumen in banks of the Athabasca River and its tributaries is a major process delivering PACs to the Athabasca Delta, and the spring freshet is a key period for contaminant mobilization and transport. This baseline environmental information is essential for informed management of natural resources and human-health concerns by provincial and federal regulatory agencies and industry, and for designing effective long-term monitoring programs for the lower Athabasca River watershed. PMID:23049946