Community and functional shifts in ammonia oxidizers across terrestrial and marine (soil/sediment) boundaries in two coastal Bay ecosystems.

PubMed

Zhang, Li-Mei; Duff, Aoife M; Smith, Cindy J

2018-04-24

Terrestrial-marine boundaries are significant sites of biogeochemical activity with delineated gradients from land to sea. While niche differentiation of ammonia-oxidizing archaea (AOA) and bacteria (AOB) driven by pH and nitrogen is well known, the patterns and environmental drivers of AOA and AOB community structure and activity across soil-sediment boundaries have not yet been determined. In this study, nitrification potential rate, community composition and transcriptional activity of AOA and AOB in soil, soil/sediment interface and sediments of two coastal Bays were characterized using a combination of field investigations and microcosm incubations. At DNA level, amoA gene abundances of AOA were significantly greater than AOB in soil, while in sediments AOB were significantly more abundant than AOA, but at the soil/sediment interface there were equal numbers of AOA and AOB amoA genes. Microcosm incubations provided further evidence, through qPCR and DGGE-sequencing analysis of amoA transcripts, that AOA were active in soil, AOB in sediment and both AOA and AOB were active at the soil/sediment interface. The AOA and AOB community composition shifted across the coastal soil-interface-sediment gradient with salinity and pH identified as major environmental drivers. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Effects of multi-well plate incubation on embryo-larval development in the fathead minnow (Pimephales promelas).

PubMed

Marentette, Julie R; Sullivan, Cheryl A; Lavalle, Christine; Shires, Kallie; Parrott, Joanne L

2015-01-01

Fathead minnow embryos and larvae are frequently used in toxicology, including short-term embryo-only tests which often use small volumes of test solution. The effect that such conditions may have on fathead minnow development has yet to be explicitly described. Here we compared rates of embryonic development in fathead minnow embryos reared under standard light and temperature conditions with a range of possible methods. All methods yielded excellent control survival. We demonstrated that fathead minnow embryos incubated in a range of small volumes in multi-well plates (500 μL to 2 mL per embryo) did not substantially vary in developmental rate, but flexed less frequently as embryos, hatched smaller, later and with larger yolk-sacs, and initiated feeding later than embryos reared in an excess of solution (20 mL per embryo) with or without supplemental aeration. Faster hatch and growth were promoted with an orbital shaker, but growth benefits were not sustained into the larval stage. Developmental differences persisted in larvae reared to 20 days post-fertilization when monitoring ceased, but growth differences did not magnify and in some measurements partially resolved. To our knowledge we are the first to report effects of incubation in multi-well plates in any fish taxa. As our data revealed that the eleutheroembryonic stage for fathead minnow may be prolonged in multi-well plates, this may allow the use of longer toxicity tests using fathead minnow embryos without conflicting with existing animal welfare legislation in many countries. Crown Copyright © 2014. Published by Elsevier Inc. All rights reserved.

The anaerobic degradation of organic matter in Danish coastal sediments - Iron reduction, manganese reduction, and sulfate reduction

NASA Technical Reports Server (NTRS)

Canfield, Donald E.; Thamdrup, BO; Hansen, Jens W.

1993-01-01

A combination of porewater and solid phase analysis as well as a series of sediment incubations are used to quantify organic carbon oxidation by dissimilatory Fe reduction, Mn reduction, and sulfate reduction, in sediments from the Skagerrak (located off the northeast coast of Jutland, Denmark). Solid phase data are integrated with incubation results to define the zones of the various oxidation processes. At S(9), surface Mn enrichments of up to 3.5 wt pct were found, and with such a ready source of Mn, dissimilatory Mn reduction was the only significant anaerobic process of carbon oxidation in the surface 10 cm of the sediment. At S(4) and S(6), active Mn reduction occurred; however, most of the Mn reduction may have resulted from the oxidation of acid volatile sulfides and Fe(2+) rather than by a dissimilatory sulfate. Dissolved Mn(2+) was found to completely adsorb onto sediment containing fully oxidized Mn oxides.

Bacterial methylmercury degradation in Florida Everglades peat sediment

USGS Publications Warehouse

Marvin-DiPasquale, M. C.; Oremland, R.S.

1998-01-01

Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently ???0.1 d-1 and decreased with sediment depth. Higher k values were observed when shorter incubation times and lower MeHg amendment levels were used, and k increased 2-fold as in-situ MeHg concentrations were approached. The average floc layer k was 0.046 ?? 0.023 d-1 (n = 17) for 1-2 day incubations. In-situ degradation rates were estimated to be 0.02-0.5 ng of MeHg (g of dry sediment)-1 d-1, increasing from eutrophied to pristine areas. Nitrate-respiring bacteria did not demethylate MeHg, and NO3- addition partially inhibited degradation in some cases. MeHg degradation rates were not affected by PO43- addition. 14CO2 production in all samples indicated that oxidative demethylation (OD) was an important degradation mechanism. OD occurred over 5 orders of magnitude of applied MeHg concentration, with lowest limits [1-18 ng of MeHg (g of dry sediment)-1] in the range of in-situ MeHg levels. Sulfate reducers and methanogens were the primary agents of anaerobic OD, although it is suggested that methanogens dominate degradation at in-situ MeHg concentrations. Specific pathways of OD by these two microbial groups are proposed.Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently ???0.1 d-1 and decreased with sediment depth. Higher k values were observed when shorter incubation times and lower MeHg amendment levels were used, and k increased 2-fold as in-situ MeHg concentrations were approached. The average floc layer k was 0.046??0.023 d-1 (n = 17) for 1-2 day incubations. In-situ degradation rates were estimated to be 0

ARSENIC MOBILIZATION FROM SEDIMENTS IN MICROCOSMS UNDER SULFATE REDUCTION

PubMed Central

Sun, Jing; Quicksall, Andrew N.; Chillrud, Steven N.; Mailloux, Brian J.; Bostick, Benjamin C.

2016-01-01

Arsenic is often assumed to be immobile in sulfidic environments. Here, laboratory-scale microcosms were conducted to investigate whether microbial sulfate reduction could control dissolved arsenic concentrations sufficiently for use in groundwater remediation. Sediments from the Vineland Superfund site and the Coeur d'Alene mining district were amended with different combination of lactate and sulfate and incubated for 30 to 40 days. In general, sulfate reduction in Vineland sediments resulted in transient and incomplete arsenic removal, or arsenic release from sediments. Sulfate reduction in the Coeur d'Alene sediments was more effective at removing arsenic from solution than the Vineland sediments, probably by arsenic substitution and adsorption within iron sulfides. X-ray absorption spectroscopy indicated that the Vineland sediments initially contained abundant reactive ferrihydrite, and underwent extensive sulfur cycling during incubation. As a result, arsenic in the Vineland sediments could not be effectively converted to immobile arsenic-bearing sulfides, but instead a part of the arsenic was probably converted to soluble thioarsenates. These results suggest that coupling between the iron and sulfur redox cycles must be fully understood for in situ arsenic immobilization by sulfate reduction to be successful. PMID:27037658

[Audit "Toys and incubators in neonatology"].

PubMed

Raginel, T; Bigoin-Dupont, M; Aguelon, V; Fines-Guyon, M; Guillemin, M G

2009-08-01

Owing to an increase in nosocomial septicaemias in the Neonatalogy department, we've judged it necessary to consider the role of items not linked to the nursing procedures, and nevertheless present in the incubators, as well as the hygiene techniques applied to them. In November 2007, we've made a longitudinal prospective study consisting in an observation audit during 3 successive days, observing every single incubator with a newborn baby. In each incubator, we've checked whether there were or not items that weren't required by the nursing activities, along with their characteristics and the hygiene procedures applied to them. We've inquired as well whether the parents and the nursing staff knew and applied the required hygiene procedures. In 13 among the 17 incubators under survey, at least one item not strictly required by the nursing procedures could be found. The number of toys in each incubator varied from seven to one. Among the 33 toys surveyed, 24 (73%) of them showed a score of maximum fluffiness (4 out of 4), and only 10 wore labels giving cleansing advice from the manufacturers. Without any record about the cleaning/disinfecting of the toys brought in hospital, we have observed that the parents were given varied advice about how to clean the toys at home before putting them in the incubators (only four parents had washed the toys in their washing machines at more than 30 degrees C). From the six samples under scrutiny, all the culture results were tested positive. In particular two of the soft toys sampled were found infected by a Pseudomonas oryzihabitans. These particular toys belonged to a baby who had been diagnosed with a septicaemia characterized by hemocultures positive to a P. oryzihabitans of a different strain. Our audit has been an efficient reminder that any item put in an incubator is a potential vector and reservoir of pathogen organisms. After a general feedback towards the department staff, the medical staff then prescribed to

Measuring the decomposition of organic carbon sequestered by salt marsh sediment

NASA Astrophysics Data System (ADS)

Light, T.; Mctigue, N.; Currin, C.

2016-12-01

As atmospheric carbon dioxide concentrations continue to rise, salt marshes are increasingly being recognized as a natural carbon sink, for large amounts of organic carbon are sequestered by salt marsh sediments. However, little is known regarding the fate of this "blue carbon" after salt marsh sediment is disturbed via erosion or lost due to sea level rise. This investigation explored novel methodologies for determining the lability of carbon sequestered by salt marsh sediment. Sediment cores were collected from a Spartina alterniflora-dominated marsh in Camp Lejeune, NC, and elemental analysis revealed that the upper 76 cm of sediment at the site contains a total carbon stock of 28.4 kg /m2. Sediment ranging from 251-545 years old, as determined through radiocarbon dating, was incubated under sub-aerial and aqueous conditions for 18 days and 25 days respectively. Carbon dioxide flux measurements revealed that shallower sediment organic matter decomposed more rapidly than deeper sediment in sub-aerial incubations, but decomposition was fairly slow in both treatments. No significant organic matter decomposition was observed in the aqueous incubations, as revealed by analyses of organic carbon remaining after the incubation period. The aqueous incubation included a treatment that had been "primed" with highly labile yeast extract, but no significant priming effect was observed over 25 days. While further investigation on the fate of this sediment carbon is needed, these preliminary findings indicate that salt marshes facilitate long-term carbon sequestration even after disturbances. This in turn supports the argument for mitigating anthropogenic carbon dioxide emissions through salt marsh restoration, and supports a policy of preserving and conserving coastal wetlands for this valuable ecosystem service.

Impact of Polymer Colonization on the Fate of Organic Contaminants in Sediment.

PubMed

Wu, Chen-Chou; Bao, Lian-Jun; Liu, Liang-Ying; Shi, Lei; Tao, Shu; Zeng, Eddy Y

2017-09-19

Plastic pellets and microbes are important constitutes in sediment, but the significance of microbes colonizing on plastic pellets to the environmental fate and transport of organic contaminants has not been adequately recognized and assessed. To address this issue, low-density polyethylene (LDPE), polyoxymethylene (POM) and polypropylene (PP) slices were preloaded with dichlorodiphenyltrichloroethanes (DDTs), polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) and incubated in abiotic and biotic sediment microcosms. Images from scanning electron microscope, Lysogeny Broth agar plates and confocal laser scanning microscope indicated that all polymer slices incubated in biotic sediments were colonized by microorganisms, particularly the LDPE slices. The occurrence of biofilms induced higher dissipation rates of DDTs and PAHs from the LDPE slice surfaces incubated in the biotic sediments than in the abiotic sediments. Plastic colonization on LDPE slice surfaces enhanced the biotransformation of DDT and some PAHs in both marine and river sediments, but had little impact on PCBs. By comparison, PP and POM with unique properties were shown to exert different impacts on the physical and microbial activities as compared to LDPE. These results clearly demonstrated that the significance of polymer surface affiliated microbes to the environmental fate and behavior of organic contaminants should be recognized.

Don't wait to incubate: immediate versus delayed incubation in divergent thinking.

PubMed

Gilhooly, Kenneth J; Georgiou, George J; Garrison, Jane; Reston, Jon D; Sirota, Miroslav

2012-08-01

Previous evidence for the effectiveness of immediate incubation in divergent creative tasks has been weak, because earlier studies exhibited a range of methodological problems. This issue is theoretically important, as a demonstration of the effects of immediate incubation would strengthen the case for the involvement of unconscious work in incubation effects. For the present experiment, we used a creative divergent-thinking task (alternative uses) in which separate experimental groups had incubation periods that were either delayed or immediate and that consisted of either spatial or verbal tasks. Control groups were tested without incubation periods, and we carried out checks for intermittent conscious work on the target task during the incubation periods. The results showed significant incubation effects that were stronger for immediate than for delayed incubation. Performance was not different between the verbal and spatial incubation conditions, and we found no evidence for intermittent conscious working during the incubation periods. These results support a role for unconscious work in creative divergent thinking, particularly in the case of immediate incubation.

Rapid assay for microbially reducible ferric iron in aquatic sediments

USGS Publications Warehouse

Lovely, Derek R.; Philips , Elizabeth J.P.

1987-01-01

The availability of ferric iron for microbial reduction as directly determined by the activity of iron-reducing organisms was compared with its availability as determined by a newly developed chemical assay for microbially reducible iron. The chemical assay was based on the reduction of poorly crystalline ferric iron by hydroxylamine under acidic conditions. There was a strong correlation between the extent to which hydroxylamine could reduce various synthetic ferric iron forms and the susceptibility of the iron to microbial reduction in an enrichment culture of iron-reducing organisms. When sediments that contained hydroxylamine-reducible ferric iron were incubated under anaerobic conditions, ferrous iron accumulated as the concentration of hydroxylamine-reducible ferric iron declined over time. Ferrous iron production stopped as soon as the hydroxylamine-reducible ferric iron was depleted. In anaerobic incubations of reduced sediments that did not contain hydroxylamine-reducible ferric iron, there was no microbial iron reduction, even though the sediments contained high concentrations of oxalate-extractable ferric iron. A correspondence between the presence of hydroxylamine-reducible ferric iron and the extent of ferric iron reduction in anaerobic incubations was observed in sediments from an aquifer and in fresh- and brackish-water sediments from the Potomac River estuary. The assay is a significant improvement over previously described procedures for the determination of hydroxylamine-reducible ferric iron because it provides a correction for the high concentrations of solid ferrous iron which may also be extracted from sediments with acid. This is a rapid, simple technique to determine whether ferric iron is available for microbial reduction.

Elucidating Microbial Species-Specific Effects on Organic Matter Transformation in Marine Sediments

NASA Astrophysics Data System (ADS)

Mahmoudi, N.; Enke, T. N.; Beaupre, S. R.; Teske, A.; Cordero, O. X.; Pearson, A.

2017-12-01

Microbial transformation and decomposition of organic matter in sediments constitutes one of the largest fluxes of carbon in marine environments. Mineralization of sedimentary organic matter by microorganisms results in selective degradation such that bioavailable or accessible compounds are rapidly metabolized while more recalcitrant, complex compounds are preserved and buried in sediment. Recent studies have found that the ability to use different carbon sources appears to vary among microorganisms, suggesting that the availability of certain pools of carbon can be specific to the taxa that utilize the pool. This implies that organic matter mineralization in marine environments may depend on the metabolic potential of the microbial populations that are present and active. The goal of our study was to investigate the extent to which organic matter availability and transformation may be species-specific using sediment from Guaymas Basin (Gulf of California). We carried out time-series incubations using bacterial isolates and sterilized sediment in the IsoCaRB system which allowed us to measure the production rates and natural isotopic signatures (δ13C and Δ14C) of microbially-respired CO2. Separate incubations using two different marine bacterial isolates (Vibrio sp. and Pseudoalteromonas sp.) and sterilized Guaymas Basin sediment under oxic conditions showed that the rate and total quantity of organic matter metabolized by these two species differs. Approximately twice as much CO2 was collected during the Vibrio sp. incubation compared to the Pseudoalteromonas sp. incubation. Moreover, the rate at which organic matter was metabolized by the Vibrio sp. was much higher than the Pseudoalteromonas sp. indicating the intrinsic availability of organic matter in sediments may depend on the species that is present and active. Isotopic analyses of microbially respired CO2 will be used to constrain the type and age of organic matter that is accessible to each species

Transport of Gas and Solutes in Permeable Estuarine Sediments

DTIC Science & Technology

2009-01-01

seagrass . 2) To quantify the size range and composition of the gas bubbles in the sediment and the overlying water. 3) To determine the volume change and...from sand containing natural bubbles produced by photosynthesis and control sediment without bubbles. Set up of the pressure tank experiments. The...above the tank will permit bubble growth in the incubated sediment by photosynthesis . RESULTS Fieldwork and bubble production. At CML, ample bubbles

Chromium isotope fractionation in ferruginous sediments

NASA Astrophysics Data System (ADS)

Bauer, Kohen W.; Gueguen, Bleuenn; Cole, Devon B.; Francois, Roger; Kallmeyer, Jens; Planavsky, Noah; Crowe, Sean A.

2018-02-01

Ferrous Fe is a potent reductant of Cr(VI), and while a number of laboratory studies have characterized Cr isotope fractionation associated with Cr(VI) reduction by ferrous iron, the expression of this fractionation in real-world ferrous Fe-rich environments remains unconstrained. Here we determine the isotope fractionation associated with Cr(VI) reduction in modern ferrous Fe-rich sediments obtained from the previously well studied Lake Matano, Indonesia. Whole core incubations demonstrate that reduction of Cr(VI) within ferruginous sediments provides a sink for Cr(VI) leading to Cr(VI) concentration gradients and diffusive Cr(VI) fluxes across the sediment water interface. As reduction proceeded, Cr(VI) remaining in the overlying lake water became progressively enriched in the heavy isotope (53Cr), increasing δ53Cr by 2.0 ± 0.1‰ at the end of the incubation. Rayleigh distillation modelling of the evolution of Cr isotope ratios and Cr(VI) concentrations in the overlying water yields an effective isotope fractionation of εeff = 1.1 ± 0.2‰ (53Cr/52Cr), whereas more detailed diagenetic modelling implies an intrinsic isotope fractionation of εint = 1.80 ± 0.04‰. Parallel slurry experiments performed using anoxic ferruginous sediment yield an intrinsic isotope fractionation of εint = 2.2 ± 0.1‰. These modelled isotope fractionations are corroborated by direct measurement of the δ53Cr composition on the upper 0.5 cm of Lake Matano sediment, revealing an isotopic offset from the lake water of Δ53Cr = 0.21-1.81‰. The data and models reveal that effective isotope fractionations depend on the depth at which Cr(VI) reduction takes place below the sediment water interface-the deeper the oxic non-reactive zone, the smaller the effective fractionation relative to the intrinsic fractionation. Based on the geochemistry of the sediment we suggest the electron donors responsible for reduction are a combination of dissolved Fe(II) and 0.5 M HCl extractable (solid

Temperature sensitivity of methanogenesis in a thermokarst lake sediment core

NASA Astrophysics Data System (ADS)

Heslop, J. K.; Walter Anthony, K. M.; Grosse, G.; Anthony, P.; Bondurant, A.

2016-12-01

Little is known about temperature sensitivity of permafrost organic carbon (OC) mineralization over time scales of years to centuries following thaw. Due to their formation and thaw histories, taliks (thaw bulbs) beneath thermokarst lakes provide a unique natural laboratory from which to examine how permafrost thawed in saturated anaerobic conditions responds to changes in temperature following long periods of time since thaw. We anaerobically incubated samples from a 590 cm thermokarst lake sediment core near Fairbanks, Alaska at four temperatures (0, 3, 10, and 25 ºC) bracketing observed talik temperatures. We show that since initial thaw 400 yr BP CH4 production shifts from being most sensitive to at lower (0-3 ºC; Q10-EC=1.15E7) temperatures to being most sensitive at higher (10-25 ºC; Q10-EC=67) temperatures. Frozen sediments collected from beneath the talik, thawed at the commencement of the incubation, had significant (p ≤ 0.05) increases in CH4 production rates at lower temperatures but did not show significant CH4 production rate increases at higher temperatures (10-25 ºC). We hypothesize the thawing of sediments removed a major barrier to C mineralization, leading to rapid initial permafrost C mineralization and preferential mineralization of the most biolabile OC compounds. In contrast, sediments which had been thawed beneath the lake for longer periods of time did not experience statistically significant increases in CH4 production at lower temperatures (0-10 ºC), but had high temperature sensitivities at higher temperatures (10-25 ºC). We believe these rate increases are due to warmer temperatures in the experimental incubations crossing activation energy thresholds, allowing previously recalcitrant fractions of OC to be utilized, and/or the presence of different microbial communities adapted to thawed sediments. Recently-deposited sediments at shallow depths in the lake core experienced increases in CH4 production across all incubation

Concentrations of Elements in Sediments and Selective Fractions of Sediments, and in Natural Waters in Contact with Sediments from Lake Roosevelt, Washington, September 2004

USGS Publications Warehouse

Paulson, Anthony J.; Wagner, Richard J.; Sanzolone, Richard F.; Cox, Steven E.

2006-01-01

Twenty-eight composite and replicate sediment samples from 8 Lake Roosevelt sites were collected and analyzed for 10 alkali and alkaline earth elements, 2 non-metals, 20 metals, and 4 lanthanide and actinide elements. All elements were detected in all sediment samples except for silver (95 percent of the elements detected for 1,008 analyses), which was detected only in 4 samples. Sequential selective extraction procedures were performed on single composite samples from the eight sites. The percentage of detections for the 31 elements analyzed ranged from 76 percent for the first extraction fraction using a weak extractant to 93 percent for the four-acid dissolution of the sediments remaining after the third sequential selective extraction. Water samples in various degrees of contact with the sediment were analyzed for 10 alkali and alkaline earth elements, 5 non-metals, 25 metals, and 16 lanthanide and actinide elements. The filtered water samples included 10 samples from the reservoir water column at 8 sites, 32 samples of porewater, 55 samples from reservoir water overlying sediments in 8 cores from the site incubated in a field laboratory, and 24 water samples that were filtered after being tumbled with sediments from 8 sites. Overall, the concentrations of only 37 percent of the 6,776 analyses of the 121 water samples were greater than the reporting limit. Selenium, bismuth, chromium, niobium, silver, and zirconium were not detected in any water samples. The percentage of concentrations for the water samples that were above the reporting limit ranged from 14 percent for the lanthanide and actinide elements to 77 percent for the alkali and alkaline earth elements. Concentrations were greater than reporting limits in only 23 percent of the analyses of reservoir water and 29 percent of the analyses of reservoir water overlying incubation cores. In contrast, 47 and 48 percent of the concentrations of porewater and water samples tumbled with sediments, respectively

Effect of well construction on the mechanical state of unconsolidated methane hydrate-bearing sediment

NASA Astrophysics Data System (ADS)

Sasaki, T.; Soga, K.; Yamamoto, K.

2016-12-01

World's first offshore production of gas from methane hydrate-bearing sediment was accomplished in Nankai Trough off the coast of Japan. The achievement signals the beginning of exploitation of methane hydrate as a new source of energy, as an estimated amount of the new gas resource significantly exceeds that of the existing conventional oil and gas resources. Conventional gas reservoirs exist in consolidated sediment (i.e. rocks) thousands of metres below seafloor, and such sediment is hard enough to resist deformation. Methane hydrate reservoirs, on the other hand, lies only a couple of hundreds of metres down the seafloor, which means the sediment is unconsolidated (i.e. soils) and is readily deformed. In addition, the hydrate melts away in the pore space when it releases gas, giving rise to a significant rearrangement of stresses in the sediment. Well construction in methane hydrate reservoir might affect the mechanical state of the sediment to the point where the interpretation of the fracture pressure test becomes difficult and sand production could be enhanced. Existing numerical simulations tend to overlook soil mechanics, which is more appropriate than rock mechanics to model unconsolidated sediment, and the effect of methane hydrate on soil's mechanical behaviour is missed. In the present research, the construction of well in unconsolidated hydrate-bearing sediment was modelled with finite element analysis incorporating the critical state soil mechanics. Results showed that cement shrinkage in the well annulus would have a significant effect on the principal stresses and directions of the sediment even if the magnitude of the shrinkage was 0.1%. Cement shrinkage would also promote the generation of plastic strains, potentially enhancing sand production. Results also showed that the direction of fracture inferred from a fracture pressure test at Nankai Trough might have been vertical, indicating it was developed at the cement-sediment interface.

Change of microbial community structure and functional gene abundance in nonylphenol-degrading sediment.

PubMed

Wang, Zhao; Yang, Yuyin; He, Tao; Xie, Shuguang

2015-04-01

Biodegradation by autochthonous microbial community is an important way to clean up nonylphenol (NP) from contaminated river sediment. Knowledge of sediment microbial community can aid in our understanding of biological processes related to NP degradation. However, the change in sediment microbial community associated with NP biodegradation remains unclear. The present study investigated the shift in bacterial community structure and NP-degrading gene abundance in response to NP attenuation in river sediment. Sediment microcosms with different levels of 4-NP (0, 100, or 300 μg/g) were constructed. A nearly complete attenuation of NP occurred in the microcosm with 100 μg/g NP after 9 days' incubation, while a residual NP rate of 8.1 % was observed in the microcosm with 300 μg/g NP after 22 days' incubation. Illumina MiSeq sequencing analysis indicated that Gammaproteobacteria, Alphaproteobacteria, and Bacteroidetes predominated in NP-degrading river sediment. Sediment bacterial community structure varied significantly during NP biodegradation and subsequent incubation, which was affected by the level of added NP. The n-alkane biodegradation (alkB) gene abundance showed a significant variation in each NP-amended microcosm (100 or 300 μg/g), while a significant increase in the single component monooxygenase (sMO) gene abundance only occurred in the microcosm spiked with 300 μg/g NP. This study can provide some new insights toward NP-degrading microbial ecology in the environment.

Atrazine degradation by bioaugmented sediment from constructed wetlands.

PubMed

Runes, H B; Jenkins, J J; Bottomley, P J

2001-10-01

The potential to establish pesticide biodegradation in constructed wetland sediment was investigated. Under microcosm conditions, bioaugmentation of sediment with small quantities of an atrazine spill-site soil (1:100 w/w) resulted in the mineralization of 25-30% of 14C ethyl atrazine (1-10 microg g(-1) sediment) as 14CO2 under both unsaturated and water-saturated conditions; atrazine and its common metabolites were almost undetectable after 30 days incubation. By comparison, unbioaugmented sediment supplemented with organic amendments (cellulose or cattail leaves) mineralized only 2-3% of 14C ethyl atrazine, and extractable atrazine and its common metabolites comprised approximately 70% of the original application. The population density of atrazine-degrading microorganisms in unbioaugmented sediment was increased from approximately 10(2)/g to 10(4)/g by bioaugmentation (1:100 w/w), and increased by another 60-fold (6.0x10(5) g(-1)) after incubation with 10 microg g(-1) of atrazine. A high population of atrazine degraders (approximately 10(6) g(-1)) and enhanced rates of atrazine mineralization also developed in bioaugmented sediment after incubation in flooded mesocosms planted with cattails (Typha latifolia) and supplemented with atrazine (3.2 mg l(-1), 1 microg g(-1) sediment). In the absence of atrazine, neither the population of atrazine degraders, nor the atrazine mineralizing potential of bioaugmented sediment increased, regardless of the presence or absence of cattails. Bioaugmentation might be a simple method to promote pesticide degradation in nursery run-off channeled through constructed wetlands, if persistence of degraders in the absence of pesticide is not a serious constraint.

Impacts of Nitrate Input on Nitrous Oxide Production in Lake Sediments

NASA Astrophysics Data System (ADS)

Ruder, C. K.; Schade, J. D.

2016-12-01

Denitrification in lake sediments removes nitrogen from the ecosystem and produces the greenhouse gas nitrous oxide (N2O) as a byproduct. However, little is understood about the rates and controls of N2O production in lake sediments. Agricultural activity in lake catchments often results in the runoff of nitrogen fertilizers, leading to increased N inputs in the form of nitrate (NO3-). This study evaluates the influence of nitrate input on N2O concentrations in a series of lakes across a range of agricultural land use intensities. We measured N2O concentrations in lakes across seasons, and also used lake sediment samples to perform anaerobic incubations with NO3- additions, with and without the addition of acetylene (blocking conversion of N2O to N2), to assess denitrification potentials and the rate of N2O production in sediments. Our results suggest that N2O concentrations are strongly impacted by the availability of NO3- across all agricultural land use intensities, with incubation NO3- additions leading to a marked increase in N2O production. However, sediments reacted differently by site in incubations without experimental additions of NO3- or acetylene, with half of the study lakes experiencing net N2O production and half exhibiting net N2O consumption over the course of the 24-hour incubation period. These results suggest the potential influence of sediment organic matter as a control on N2O concentrations. The positive influence of NO3- on N2O production is supported by observational data at each of the study sites, though water column total nitrogen (TN) appears to be a better indicator of dissolved N2O concentrations than aqueous NO3-, perhaps due to variations in internal N recycling. This study concludes that agricultural runoff of NO3- has the potential to enhance sediment N2O production; however, further investigation into the effects of sediment organic matter on N2O production, analysis of N2O vertical diffusion efficiency to link production rates

Input from Key Stakeholders in the National Security Technology Incubator

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

This report documents the input from key stakeholders of the National Security Technology Incubator (NSTI) in developing a new technology incubator and related programs for southern New Mexico. The technology incubator is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes identification of key stakeholders as well as a description and analysis of their input for the development of an incubator.

Hydrocarbon Degradation Pathways used by Coastal Sediment Microbial Communities exposed to Crude Oil

NASA Astrophysics Data System (ADS)

Spaulding-Astudillo, F.; Sharrar, A.; Orcutt, B.

2016-02-01

The site-specific microbial community response to crude oil exposure in marine environments is not well described. Moreover, the abundance of genes implicated in long-chain alkane (LCA) and polycyclic aromatic hydrocarbon (PAH) degradation are not well understood. Coastal sediments from the Beaufort Sea, Gulf of Alaska, and Portland Harbor were treated with crude oil and incubated aerobically. Deep-sea sediments from the Gulf of Mexico were treated with the same crude oil and anaerobically incubated in situ for five months before recovery. Cycloclasticus, a known hydrocarbon-degrader, was abundant in all oiled, aerobic samples regardless of temperature, demonstrating a generalist oil-response strategy. Other hydrocarbon degrading bacteria showed differential response to either site or temperature. Primers for alkB, assA, bssA, and ncr, catabolic gene markers for aerobic LCA degradation, anaerobic LCA degradation, anaerobic LCA & PAH degradation, and anaerobic PAH degradation, respectively, were found in literature and tested on DNA extracts in a QPCR-based assay. Gene abundance was site and condition variable.

Accelerated Rates of Nitrogen Cycling and N2O Production in Salt Marsh Sediments due to Long-Term Fertilization

NASA Astrophysics Data System (ADS)

Peng, X.; Ji, Q.; Angell, J.; Kearns, P.; Bowen, J. L.; Ward, B. B.

2014-12-01

Intensified sedimentary production of nitrous oxide (N2O), one of the most potent greenhouse gases, is one of the many possible environmental consequences of elevated nitrogen (N) loading into estuarine ecosystems. This study investigates the response to over 40 years of fertilization of nitrogen removal processes in the sediments of the Great Sippewissett Marsh in Falmouth, MA. Sediment slurries were incubated (1.5 hr) with trace amounts (< 10% of ambient concentration) of 15NH4+ + 14NO3- or 15NO3- + 14NH4+. An additional parallel incubation with 15NH4+ + 14NO3- and 1 mM of allylthiourea (ATU) was included to measure rates of anaerobic ammonia oxidation (anammox). Well-homogenized slurries filled about 10% of the volume in the gas-tight incubation vials, and the rest of the volume was replaced with an O2/He (20%/80%) mixture. The production of 29N2, 44N2O and 45N2O were determined using isotope ratio mass spectrometry. The rate of total N2O production in fertilized sediments (0.89 nmol hr-1 g-1 wet weight) was 30-fold higher than in unfertilized sediments. The ratio of N2O to N2 production was also significantly higher in fertilized sediments (2.9%) than in unfertilized sediments (1.2%). This highlights the disproportionally large effect of long-term fertilization on N2O production in salt marsh sediments. The reduced oxygen level and higher ammonium concentrations in situ probably contributed to the significant rise in N2O production as a result of long-term fertilization. When detected, anammox and coupled nitrification-denitrification accounted for 10% and 14% of the total N2 production in fertilized sediments (30.5 nmol hr-1 g-1 wet weight), respectively, whereas neither was detected in unfertilized sediments. Thus these experiments indicate that N loading has important effects on multiple N cycle processes that result in N loss and N2O production.

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

USGS Publications Warehouse

Krumholz, Lee R.; Elias, Dwayne A.; Suflita, Joseph M.

2003-01-01

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Effects of spatial and temporal variation of acid-volatile sulfide on the bioavailability of copper and zinc in freshwater sediments

USGS Publications Warehouse

Besser, John M.; Ingersoll, Christopher G.; Giesty, John P.

1996-01-01

Variation in concentrations of acid-volatile sulfide (AVS) in sediments from the upper Clark Fork River of Montana, USA, was associated with differences in bioaccumulation of Cu and Zn and growth of larvae of the midge, Chironomus tentans. Growth of midge larvae was significantly greater and bioaccumulation of Cu was significantly less in surface sections (0–3 cm depth) of sediment cores, which had greater concentrations of AVS and lesser ratios of simultaneously extracted metals to AVS (SEM:AVS ratios) than in subsurface sediments (6–9 cm). Concentrations of AVS were significantly less in sediments incubated with oxic overlying water for 9 weeks than in the same sediments incubated under anoxic conditions. Bioaccumulation of Cu differed significantly between incubation treatments, corresponding to differences in concentrations of AVS and SEM:AVS ratios, although midge growth did not. Bioaccumulation of Zn did not differ significantly between depth strata of sediment cores or between incubation treatments. When results from the two sets of bioassays were combined, bioaccumulation of Cu and Zn, but not growth, was significantly correlated with SEM:AVS ratios and other estimates of bioavailable metal fractions in sediments. Growth of midge larvae was significantly correlated with bioaccumulation of Zn, but not Cu, suggesting that Zn was the greater contributor to the toxicity of these sediments. Assessments of the toxicity of metal-contaminated freshwater sediments should consider the effects of spatial and temporal variation in AVS concentrations on metal bioavailability.

Childhood leukemia and magnetic fields in infant incubators.

PubMed

Söderberg, Karin C; Naumburg, Estelle; Anger, Gert; Cnattingius, Sven; Ekbom, Anders; Feychting, Maria

2002-01-01

In studies of magnetic field exposure and childhood leukemia, power lines and other electrical installations close to the children's homes constitute the most extensively studied source of exposure. We conducted a study to assess whether exposure to magnetic fields in infant incubators is associated with an increased leukemia risk. We identified all children with leukemia born in Sweden between 1973 and 1989 from the national Cancer Registry and selected at random one control per case, individually matched by sex and time of birth, from the study base. We retrieved information about treatment in infant incubators from medical records. We made measurements of the magnetic fields inside the incubators for each incubator model kept by the hospitals. Exposure assessment was based on measurements of the magnetic field level inside the incubator, as well as on the length of treatment. For acute lymphoblastic leukemia, the risk estimates were close to unity for all exposure definitions. For acute myeloid leukemia, we found a slightly elevated risk, but with wide confidence intervals and with no indication of dose response. Overall, our results give little evidence that exposure to magnetic fields inside infant incubators is associated with an increased risk of childhood leukemia.

Pathways of organic carbon oxidation in three continental margin sediments

NASA Technical Reports Server (NTRS)

Canfield, D. E.; Jorgensen, B. B.; Fossing, H.; Glud, R.; Gundersen, J.; Ramsing, N. B.; Thamdrup, B.; Hansen, J. W.; Nielsen, L. P.; Hall, P. O.

1993-01-01

We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and Sigma CO2 liberation sediment incubations were used with O2 penetration depths to conclude that O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated organic carbon mineralization, but their relative significance varied depending on the sediment. Where high concentrations of Mn-oxide were found (3-4 wt% Mn), only Mn reduction occurred. With lower Mn oxide concentrations more typical of coastal sediments, Fe reduction and sulfate reduction were most important and of a similar magnitude. Overall, most of the measured O2 flux into the sediment was used to oxidized reduced inorganic species and not organic carbon. We suspect that the importance of O2 respiration in many coastal sediments has been overestimated, whereas metal oxide reduction (both Fe and Mn reduction) has probably been well underestimated.

Evolution of Incubation Models: Evidence from the Italian Incubation Industry

ERIC Educational Resources Information Center

Grandi, Alessandro; Grimaldi, Rosa

2004-01-01

This paper addresses the role of incubators in supporting new venture creation. A mapping of four different types of incubator is proposed: corporate private incubators (CPIs), independent private incubators (IPIs), business innovation centres (BICs) and university business incubators (UBIs). This mapping is exemplified through case studies of one…

Influence of acid volatile sulfides and metal concentrations on metal partitioning in contaminated sediments

USGS Publications Warehouse

Lee, J.-S.; Lee, B.-G.; Luoma, S.N.; Choi, H.J.; Koh, C.-H.; Brown, C.L.

2000-01-01

The influence of acid volatile sulfide (AVS) on the partitioning of Cd, Ni, and Zn in porewater (PW) and sediment as reactive metals (SEM, simultaneously extracted metals) was investigated in laboratory microcosms. Two spiking procedures were compared, and the effects of vertical geochemical gradients and infaunal activity were evaluated. Sediments were spiked with a Cd-Ni-Zn mixture (0.06, 3, 7.5 ??mol/g, respectively) containing four levels of AVS (0.5, 7.5, 15, 35 ??mol/g). The results were compared to sediments spiked with four levels of Cd-Ni-Zn mixtures at one AVS concentration (7.5 ??mol/g). A vertical redox gradient was generated in each treatment by an 18-d incubation with an oxidized water column. [AVS] in the surface sediments decreased by 65-95% due to oxidation during incubation; initial [AVS] was maintained at 0.5-7.5 cm depth. PW metal concentrations were correlated with [SEM - AVS] among all data. But PW metal concentrations were variable, causing the distribution coefficient, Kd(pw) (the ratio of [SEM] to PW metal concentrations) to vary by 2-3 orders of magnitude at a given [SEM - AVS]. One reason for the variability was that vertical profiles in PW metal concentrations appeared to be influenced by diffusion as well as [SEM - AVS]. The presence of animals appeared to enhance the diffusion of at least Zn. The generalization that PW metal concentrations are controlled by [SEM - AVS] is subject to some important qualifications if vertical gradients are complicated, metal concentrations vary, or equilibration times differ.The influence of acid volatile sulfide (AVS) on the partitioning of Cd, Ni, and Zn in porewater (PW) and sediment as reactive metals (SEM, simultaneously extracted metals) was investigated in laboratory microcosms. Two spiking procedures were compared, and the effects of vertical geochemical gradients and infaunal activity were evaluated. Sediments were spiked with a Cd-Ni-Zn mixture (0.06, 3, 7.5 ??mol/g, respectively) containing

Impacts of ocean acidification on the carbonate system at the sediment-water interface: a case-study in the NW Mediterranean Sea

NASA Astrophysics Data System (ADS)

Rassmann, Jens; Lansard, Bruno; Gazeau, Frédéric; Grenz, Christian; Alliouane, Samir; Petit, Franck; Pozzato, Lara; Bombled, Bruno; Rabouille, Christophe

2016-04-01

According to common predictions, carbon dioxide (CO2) uptake from the atmosphere into the oceans will decrease the average pH of seawater by 0.06-0.32 pH units by 2100. Ocean acidification alters chemical equilibria in seawater and thus potentially impacts marine ecosystem structure and functioning. Shelf regions play a key role for an important fraction of marine life and represent an important part of the global carbon cycle. Due to shallow water depth, chemistry in the water column is strongly coupled with biogeochemistry in the sediments. The aim of the present work is to investigate the impact of ocean acidification on carbonate chemistry. It focuses especially on exchange fluxes of dissolved inorganic carbon (DIC), total alkalinity (TA) and calcium through the sediment-water interface, and its impact on calcium carbonate precipitation or dissolution. For this purpose, sediment cores were incubated ex situ with an open flow of CO2 enriched seawater for 22 days (pHT=7,4, pH reported on the total proton scale). In parallel, sediment cores were incubated as a control with untreated seawater. Incubations took place in a water bath in a dark room with controlled temperature (14°C). Oxygen and pH microprofiles were recorded in the top first mm of the sediment during the whole experiment every 3 days. On 7 occasions, cores were isolated and incubated for 12 hours to estimate fluxes of DIC, TA, oxygen and nutrients. Porewater profiles of DIC, TA, calcium and nutrients were analyzed before and after incubation. On the solid phase, the content of particulate organic carbon, the C:N ratio and its isotopic δ15N and δ13C signature have been determined. In addition, total carbon contents have been measured and X-Ray diffraction was used to look for phase shifts between calcite and aragonite. A net decrease of pH was observed in the upper sediment layers, as well as an increase of DIC and TA pore water concentrations. The acidified cores showed higher DIC and TA exchange

Hydrocarbon composition and concentrations in the Gulf of Mexico sediments in the 3 years following the Macondo well blowout.

PubMed

Babcock-Adams, Lydia; Chanton, Jeffrey P; Joye, Samantha B; Medeiros, Patricia M

2017-10-01

In April of 2010, the Macondo well blowout in the northern Gulf of Mexico resulted in an unprecedented release of oil into the water column at a depth of approximately 1500 m. A time series of surface and subsurface sediment samples were collected to the northwest of the well from 2010 to 2013 for molecular biomarker and bulk carbon isotopic analyses. While no clear trend was observed in subsurface sediments, surface sediments (0-3 cm) showed a clear pattern with total concentrations of n-alkanes, unresolved complex mixture (UCM), and petroleum biomarkers (terpanes, hopanes, steranes) increasing from May to September 2010, peaking in late November 2010, and strongly decreasing in the subsequent years. The peak in hydrocarbon concentrations were corroborated by higher organic carbon contents, more depleted Δ 14 C values and biomarker ratios similar to those of the initial MC252 crude oil reported in the literature. These results indicate that at least part of oil discharged from the accident sedimented to the seafloor in subsequent months, resulting in an apparent accumulation of hydrocarbons on the seabed by the end of 2010. Sediment resuspension and transport or biodegradation may account for the decrease in sedimented oil quantities in the years following the Macondo well spill. Copyright © 2017 Elsevier Ltd. All rights reserved.

Use of the [(14)C]leucine incorporation technique to measure bacterial production in river sediments and the epiphyton.

PubMed

Fischer, H; Pusch, M

1999-10-01

Bacterial production is a key parameter for the understanding of carbon cycling in aquatic ecosystems, yet it remains difficult to measure in many aquatic habitats. We therefore tested the applicability of the [(14)C]leucine incorporation technique for the measurement of bulk bacterial production in various habitats of a lowland river ecosystem. To evaluate the method, we determined (i) extraction efficiencies of bacterial protein from the sediments, (ii) substrate saturation of leucine in sediments, the biofilms on aquatic plants (epiphyton), and the pelagic zone, (iii) bacterial activities at different leucine concentrations, (iv) specificity of leucine uptake by bacteria, and (v) the effect of the incubation technique (perfused-core incubation versus slurry incubation) on leucine incorporation into protein. Bacterial protein was best extracted from sediments and precipitated by hot trichloroacetic acid treatment following ultrasonication. For epiphyton, an alkaline-extraction procedure was most efficient. Leucine incorporation saturation occurred at 1 microM in epiphyton and 100 nM in the pelagic zone. Saturation curves in sediments were difficult to model but showed the first level of leucine saturation at 50 microM. Increased uptake at higher leucine concentrations could be partly attributed to eukaryotes. Addition of micromolar concentrations of leucine did not enhance bacterial electron transport activity or DNA replication activity. Similar rates of leucine incorporation into protein calculated for whole sediment cores were observed after slurry and perfused-core incubations, but the rates exhibited strong vertical gradients after the core incubation. We conclude that the leucine incorporation method can measure bacterial production in a wide range of aquatic habitats, including fluvial sediments, if substrate saturation and isotope dilution are determined.

Use of the [14C]Leucine Incorporation Technique To Measure Bacterial Production in River Sediments and the Epiphyton

PubMed Central

Fischer, Helmut; Pusch, Martin

1999-01-01

Bacterial production is a key parameter for the understanding of carbon cycling in aquatic ecosystems, yet it remains difficult to measure in many aquatic habitats. We therefore tested the applicability of the [14C]leucine incorporation technique for the measurement of bulk bacterial production in various habitats of a lowland river ecosystem. To evaluate the method, we determined (i) extraction efficiencies of bacterial protein from the sediments, (ii) substrate saturation of leucine in sediments, the biofilms on aquatic plants (epiphyton), and the pelagic zone, (iii) bacterial activities at different leucine concentrations, (iv) specificity of leucine uptake by bacteria, and (v) the effect of the incubation technique (perfused-core incubation versus slurry incubation) on leucine incorporation into protein. Bacterial protein was best extracted from sediments and precipitated by hot trichloroacetic acid treatment following ultrasonication. For epiphyton, an alkaline-extraction procedure was most efficient. Leucine incorporation saturation occurred at 1 μM in epiphyton and 100 nM in the pelagic zone. Saturation curves in sediments were difficult to model but showed the first level of leucine saturation at 50 μM. Increased uptake at higher leucine concentrations could be partly attributed to eukaryotes. Addition of micromolar concentrations of leucine did not enhance bacterial electron transport activity or DNA replication activity. Similar rates of leucine incorporation into protein calculated for whole sediment cores were observed after slurry and perfused-core incubations, but the rates exhibited strong vertical gradients after the core incubation. We conclude that the leucine incorporation method can measure bacterial production in a wide range of aquatic habitats, including fluvial sediments, if substrate saturation and isotope dilution are determined. PMID:10508068

Reactive iron in marine sediments

NASA Technical Reports Server (NTRS)

Canfield, Donald E.

1989-01-01

The influence of reactive iron oxides on sediment pore-water chemistry is considered in detail. A carefully calibrated extraction scheme is used to determine the depth distributions of reactive iron phases at two very different localities: the relatively iron-rich Mississippi Delta and the relatively iron-poor FOAM site in Long Island Sound. Closed system incubations are used to characterize the rates of reaction between sulfide and both naturally occurring and pure iron mineral phases. Rates of iron liberation to pore solution are measured in the presence and absence of sulfate reduction, and the origin of dissolved iron in organic-rich sediments is speculated upon.

Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes

USGS Publications Warehouse

He, Ruo; Wooller, Matthew J.; Pohlman, John W.; Quensen, John; Tiedje, James M.; Leigh, Mary Beth

2012-01-01

Methane (CH4) flux to the atmosphere is mitigated via microbial CH4 oxidation in sediments and water. As arctic temperaturesincrease, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is importantto predicting future CH4 emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), andpyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C,and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH4 oxidation activitywas measured in microcosm incubations containing sediments at all temperatures, with the highest CH4 oxidation potential of37.5 mol g1 day1 in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and ofthe 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in 13C-labeled DNA obtained bySIP demonstrated that the type I methanotrophs Methylobacter, Methylomonas, and Methylosoma dominated carbon acquisitionfrom CH4 in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature.Methylotrophs were also abundant in the microbial community that derived carbon from CH4, especially in the deeper sediments(depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R0.82) with the relativeabundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophiccommunities in arctic lake sediments respond to temperature variations.

Biogeochemistry of mercury in soils and sediments in a mining-impacted watershed, California

NASA Astrophysics Data System (ADS)

Holloway, J. M.; Goldhaber, M. B.

2004-12-01

The East Davis Creek watershed, located in the California Coast Ranges, is host to historic mines that provided mercury for recovery of gold in the Sierra Nevada goldfields in the mid-to-late 1800s. Bedrock in this watershed includes marine sedimentary rock, serpentinite, and hydrothermally altered serpentinite. Cinnabar (HgS) found in the altered serpentinite is the primary ore mineral for mercury. We evaluated the hypothesis that mercury is sequestered in soil organic matter downstream from source areas, releasing a fraction as water-soluble methylmercury. Microbial biomass and the presence of sulfur-reducing bacteria implicated in mercury methylation were quantified using phospholipid fatty acid (PLFA) data. Methylation incubations were performed on soil and sediment inoculated with water from Davis Creek Reservoir and sealed in glass containers under an anoxic headspace for 21 days. Methylmercury was measured on extracts of the soils at the start and at the end of the incubation period. Two sources of mercury to stream sediments, a soil with an altered serpentinite parent and mine tailings, were incubated. Stream sediment, an overbank deposit soil and a wetland soil forming from these sediments were also incubated. The overbank deposit soil is periodically flooded. The wetland soil around the edge of Davis Creek Reservoir is perennially saturated with water. The altered serpentinite soil and mine tailings had the highest total mercury concentrations (170 and 150 ng Hg /g, respectively). Total mercury concentrations in stream sediments are low (¡Ü1 ng Hg/g), with higher mercury concentrations in the overbank (3 ng/g) and wetland soils (18 ng Hg/g). Mercury leached from altered serpentinite soils and mine tailings may be transported downstream and sequestered through sorption to organic matter in the overbank and wetland soils. PLFA biomarkers for Desulfobacter (10Me16:0) and Desulfovibrio (i17:1) were present in all incubated materials, with lower

Use of ecocores in estimating the biodegradation potential of 4-nonylphenol in freshwater sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dawson, T.D.; Liber, K.

1995-12-31

Ecocores, a type of sediment microcosm used to estimate biodegradation rates in sediments, were used in conjunction with a full-scale mesocosm study to help determine the possible mechanism of degradation of 4-nonylphenol in freshwater sediments. Ecocore and mesocosm sediments displayed very similar nonylphenol concentrations over the duration of the 8-week experiment; neither revealed any signs of nonylphenol degradation. Average nonylphenol concentrations at the beginning of the experiment were not significantly different from concentrations measured at the end of the experiment for both field (9.2 vs. 10.2 {micro}g/g) and ecocore (3.2 vs. 6.4 {micro}g/g) sediments. Mean nonylphenol concentrations remained relatively constantmore » over the duration of the 55-d incubation period in both viable (6.4 {+-} 3.9 {micro}g/g) and sterilized (8.0 {+-} 7.7 {micro}g/g) ecocore sediments. The observation of stable bacterial densities in this study is consistent with the lack of biodegradation of nonylphenol in the sediments of the test system. Ecocores worked well in conjunction with a mesocosm experiment where contaminant loads to the sediment were defined and to some extent controlled. This study indicated that sediment associated 4-nonylphenol is very resistant to microbial degradation within the experimental conditions and 8-week time frame used here.« less

Nutrient fluxes across sediment-water interface in Bohai Bay Coastal Zone, China.

PubMed

Mu, Di; Yuan, Dekui; Feng, Huan; Xing, Fangwei; Teo, Fang Yenn; Li, Shuangzhao

2017-01-30

Sediment cores and overlying water samples were collected at four sites in Tianjin Coastal Zone, Bohai Bay, to investigate nutrient (N, P and Si) exchanges across the sediment-water interface. The exchange fluxes of each nutrient species were estimated based on the porewater profiles and laboratory incubation experiments. The results showed significant differences between the two methods, which implied that molecular diffusion alone was not the dominant process controlling nutrient exchanges at these sites. The impacts of redox conditions and bioturbation on the nutrient fluxes were confirmed by the laboratory incubation experiments. The results from this study showed that the nutrient fluxes measured directly from the incubation experiment were more reliable than that predicted from the porewater profiles. The possible impacts causing variations in the nutrient fluxes include sewage discharge and land reclamation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Reconnaissance of Macondo-1 well oil in sediment and tarballs from the northern Gulf of Mexico shoreline, Texas to Florida

USGS Publications Warehouse

Rosenbauer, Robert J.; Campbell, Pamela L.; Lam, Angela; Lorenson, T.D.; Hostettler, Frances D.; Thomas, Burt; Wong, Florence L.

2010-01-01

Hydrocarbons were extracted and analyzed from sediment and tarballs collected from the northern Gulf of Mexico (nGOM) coast that is potentially impacted by Macondo-1 (M-1) well oil. The samples were analyzed for a suite of diagnostic geochemical biomarkers. Aided by multivariate statistical analysis, the M-1 well oil has been identified in sediment and tarballs collected from Louisiana, Alabama, Mississippi, and Florida. None of the sediment hydrocarbon extracts from Texas correlated with the M-1 well oil. Oil-impacted sediments are confined to the shoreline adjacent to the cumulative oil slick of the Deepwater Horizon oil spill, and no impact was observed outside of this area.

Anaerobic Oxidation of Methane in Sediments of Two Boreal Lakes

NASA Astrophysics Data System (ADS)

Tiirola, M. A.; Rissanen, A. J.; Karvinen, A.; Nykänen, H.; Mpamah, P.; Peura, S.; Kankaala, P.

2014-12-01

In this study, potential for Anaerobic oxidation of methane (AOM) coupled with metal reduction was studied in boreal lake sediments. Slurries of sediment samples collected from two sites in southeastern Finland, i.e. from Lake Orivesi, Heposelkä, an vegetated littoral site, dominated by Phragmites australis (Sample Sa, sediment layer 0 - 25 cm) and from the profundal zone of a mesotrophic Lake Ätäskö (Aa, 0 - 10 cm; Ab, 10 - 30 cm; Ac, 90 - 130 cm), were incubated in laboratory in anaerobic conditions at in situ temperatures for up to 5 months. The samples were amended either 1) with 13CH4, 2) 13CH4 + manganese(IV) oxide (MnO2) or 3) 13CH4 + iron(III) hydroxide (Fe(OH)3), and the processes were measured by following the 13C transfer to the carbon dioxide (CO2) pool and by concentration measurements of CH4 and CO2. Changes in microbial communities were studied from DNA extracted from sediment samples before and after incubation period by next-generation sequencing (Ion Torrent) of polymerase chain reaction (PCR) - amplified bacterial and archaeal 16S rRNA and methyl coenzyme-M reductase gene (mcrA) amplicons. AOM took place in every sample except in deepest sample (Ac) with potential rates up to 2.1 nmol CH4 d-1 g-1wetsedim (~2 nmol d-1 cm-3) which are considerably lower than previously reported metal-driven AOM in marine sediments (10-40 nmol d-1 cm-3) but within a range of NO3- -driven AOM in an oligotrophic lake (0.6-3.6 nmol d-1 cm-3). AOM took place without metal additions but addition of Mn4+ increased the potential rates and this increase was especially high in 10-30 cm layer (Ab) of the profundal site (5-fold increase). The structure of the bacterial and archaeal communities changed considerably during incubation. Communities incubated with Mn4+ were especially different from those incubated with Fe3+ or without metals which were more similar with each other. Surprisingly, anaerobic methanotrophic archaea detected, ANME-2D and AOM-associated archaea (AAA

Micro-incubator for bacterial biosensing applications

NASA Astrophysics Data System (ADS)

Clasen, Estine; Land, Kevin; Joubert, Trudi-Heleen

2016-02-01

The presence of Escherichia coli (E. coli ) is a commonly used indicator micro-organism to determine whether water is safe for human consumption.1 This paper discusses the design of a micro-incubator that can be applied to concentrate bacteria prior to environmental water quality screening tests. High sensitivity and rapid test time is essential and there is a great need for these tests to be implemented on-site without the use of a laboratory infrastructure. In the light of these requirements, a mobile micro-incubator was designed, manufactured and characterised. A polydimethylsiloxane (PDMS) receptacle has been designed to house the 1-5 ml cell culture sample.2 A nano-silver printed electronics micro-heater has been designed to incubate the bacterial sample, with an array of temperature sensors implemented to accurately measure the sample temperature at various locations in the cell culture well. The micro-incubator limits the incubation temperature range to 37+/-3 °C in order to ensure near optimal growth of the bacteria at all times.3 The incubation time is adjustable between 30 minutes and 9 hours with a maximum rise time of 15 minutes to reach the set-point temperature. The surface area of the printed nano silver heating element is 500 mm2. Electrical and COMSOL Multiphysics simulations are included in order to give insight on micro-incubator temperature control. The design and characterization of this micro-incubator allows for further research in biosensing applications.

ANAEROBIC BIODEGRADATION OF 2,4-DICHLOROPHENOL IN FRESHWATER LAKE SEDIMENTS AT DIFFERENT TEMPERATURES

EPA Science Inventory

Anaerobic degradation of 2,4-dichlorophenol (2,4-DCP) between 5 and 72C was investigated. naerobic sediment slurries prepared from local freshwater sediments were partitioned into anaerobic tubes or serum vials, which then were incubated separately at the various temperatures. ed...

Microanalysis of dissolved iron and phosphate in pore waters of hypersaline sediment

NASA Technical Reports Server (NTRS)

Haddad, R.; Shaw, T.

1985-01-01

Diurnal fluctuations of reduced iron concentrations, expected to occur in reduced sediments in the photic zone, were studied. Iron concentration was compared to O2-H2S, a microcanalysis of sulfate reduction was performed, as well as an examination of diurnal concentration of dissolved phosphate and changes in interstitial CO2. The iron profiles suggest a strong correlation between iron remobilization and processes occurring in the light. Phosphate profiles suggest the removal of phosphate is strongly correlated with precipitation of oxidized iron in the upper 2 mm to 5 mm of the sediments. Pore water CO2 concentrations and carbon isotope ratios are presented. These data are from the analyses of minisediment cores collected from the 42 per mil salt pond and incubated in the laboratory under light and dark conditions.

BACTERIAL METHYLMERCURY DEGRADATION IN FLORIDA EVERGLADES PEAT SEDIMENT

EPA Science Inventory

Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently <=0.1 d-1 and decreased ...

Microbial acetogenesis as a source of organic acids in ancient Atlantic Coastal Plain sediments

USGS Publications Warehouse

Chapelle, F.H.; Bradley, P.M.

1996-01-01

Field and laboratory evidence shows that deeply buried (90-888 m) fine-grained sediments of the Atlantic Coastal Plain contain viable acetogenic microorganisms, and that these microorganisms actively produce organic acids. Concentrations of formate, acetate, and propionate in pore waters extracted from fine-grained sediments ranged from 50 ??M to 5 mM and were much higher than in adjacent pore waters associated with sandy sediments (<2 ??M). Laboratory studies showed that asceptically cored fine-grained sediments incubated under a H2 atmosphere produced formate and acetate, and that H14CO-3 was converted to 14C-acetate and 14C-formate over time. An enrichment culture of these acetogenic microorganisms was recovered from one long-term incubation that showed the presence of several morphologically distinct gram-positive, rod-shaped bacteria. These microorganisms were capable of growth under autotrophic (H2 + CO2), heterotrophic (syringate), and mixotrophic (H2 + CO2 + syringate) conditions. These results suggest that microbial acetogenesis, rather than abiotic processes, is the most important organic acid-producing mechanism during low-temperature (???30 ??C) diagenesis of Atlantic Coastal Plain sediments.

Three-Dimensional Sediment Dynamics in Well-Mixed Estuaries: Importance of the Internally Generated Overtide, Spatial Settling Lag, and Gravitational Circulation

NASA Astrophysics Data System (ADS)

Wei, Xiaoyan; Kumar, Mohit; Schuttelaars, Henk M.

2018-02-01

To investigate the dominant sediment transport and trapping mechanisms, a semi-analytical three-dimensional model is developed resolving the dynamic effects of salt intrusion on sediment in well-mixed estuaries in morphodynamic equilibrium. As a study case, a schematized estuary with a converging width and a channel-shoal structure representative for the Delaware estuary is considered. When neglecting Coriolis effects, sediment downstream of the estuarine turbidity maximum (ETM) is imported into the estuary through the deeper channel and exported over the shoals. Within the ETM region, sediment is transported seaward through the deeper channel and transported landward over the shoals. The largest contribution to the cross-sectionally integrated seaward residual sediment transport is attributed to the advection of tidally averaged sediment concentrations by river-induced flow and tidal return flow. This contribution is mainly balanced by the residual landward sediment transport due to temporal correlations between the suspended sediment concentrations and velocities at the M2 tidal frequency. The M2 sediment concentration mainly results from spatial settling lag effects and asymmetric bed shear stresses due to interactions of M2 bottom velocities and the internally generated M4 tidal velocities, as well as the salinity-induced residual currents. Residual advection of tidally averaged sediment concentrations also plays an important role in the landward sediment transport. Including Coriolis effects hardly changes the cross-sectionally integrated sediment balance, but results in a landward (seaward) sediment transport on the right (left) side of the estuary looking seaward, consistent with observations from literature. The sediment transport/trapping mechanisms change significantly when varying the settling velocity and river discharge.

Bacterial reduction of selenium in coal mine tailings pond sediment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siddique, T.; Arocena, J.M.; Thring, R.W.

2007-05-15

Sediment from a storage facility for coal tailings solids was assessed for its capacity to reduce selenium (Se) by native bacterial community. One Se{sup 6+}-reducing bacterium Enterobacter hormaechei (Tar11) and four Se{sup 4+}-reducing bacteria, Klebsiella pneumoniae (Tar1), Pseudomonasfluorescens (Tar3), Stenotrophomonas maltophilia (Tar6), and Enterobacter amnigenus (Tar8) were isolated from the sediment. Enterobacter horinaechei removed 96% of the added Se{sup 6+} (0.92 mg L{sup -1} from the effluents when Se6+ was determined after 5 d of incubation. Analysis of the red precipitates showed that Se{sup 6+} reduction resulted in the formation of spherical particles ({lt}1.0 {mu} m) of Se 0 asmore » observed under scanning electron microscope (SEM) and confirmed by EDAX. Selenium speciation was performed to examine the fate of the added Se{sup 6+} in the sediment with or without addition of Enterobacter hormaechei cells. More than 99% of the added Se{sup 6+} (about 2.5 mg L{sup -1}) was transformed in the nonsterilized sediment (without Enterobacter hormaechei cells) as well as in the sterilized (heat-killed) sediment (with Enterobacter hormaechei cells). The results of this study suggest that the lagoon sediments at the mine site harbor Se{sup 6+}- and Se{sup 4+} -reducing bacteria and may be important sinks for soluble Se (Se{sup 6+} and Se{sup 4+}). Enterobacter hormaechei isolated from metal-contaminated sediment may have potential application in removing Se from industrial effluents.« less

Distribution and Rate of Methane Oxidation in Sediments of the Florida Everglades †

PubMed Central

King, Gary M.; Roslev, Peter; Skovgaard, Henrik

1990-01-01

Rates of methane emission from intact cores were measured during anoxic dark and oxic light and dark incubations. Rates of methane oxidation were calculated on the basis of oxic incubations by using the anoxic emissions as an estimate of the maximum potential flux. This technique indicated that methane oxidation consumed up to 91% of the maximum potential flux in peat sediments but that oxidation was negligible in marl sediments. Oxygen microprofiles determined for intact cores were comparable to profiles measured in situ. Thus, the laboratory incubations appeared to provide a reasonable approximation of in situ activities. This was further supported by the agreement between measured methane fluxes and fluxes predicted on the basis of methane profiles determined by in situ sampling of pore water. Methane emissions from peat sediments, oxygen concentrations and penetration depths, and methane concentration profiles were all sensitive to light-dark shifts as determined by a combination of field and laboratory analyses. Methane emissions were lower and oxygen concentrations and penetration depths were higher under illuminated than under dark conditions; the profiles of methane concentration changed in correspondence to the changes in oxygen profiles, but the estimated flux of methane into the oxic zone changed negligibly. Sediment-free, root-associated methane oxidation showed a pattern similar to that for methane oxidation in the core analyses: no oxidation was detected for roots growing in marl sediment, even for roots of Cladium jamaicense, which had the highest activity for samples from peat sediments. The magnitude of the root-associated oxidation rates indicated that belowground plant surfaces may not markedly increase the total capacity for methane consumption. However, the data collectively support the notion that the distribution and activity of methane oxidation have a major impact on the magnitude of atmospheric fluxes from the Everglades. PMID:16348299

Anaerobic oxidation of methane in sediments of two boreal lakes

NASA Astrophysics Data System (ADS)

Rissanen, Antti J.; Karvinen, Anu; Nykänen, Hannu; Mpamah, Promise; Peura, Sari; Tiirola, Marja; Kankaala, Paula

2014-05-01

Anaerobic oxidation of methane (AOM) is a considerable sink for methane (CH4) in marine systems, but very little is known about the occurrence and importance of the process in freshwater systems. In addition, much about the microbial communities involved in AOM is unclear. AOM coupled with sulfate reduction is the dominant AOM process in marine systems but the scarce existing data suggest that, in freshwater systems, AOM coupled with reduction of alternative electron acceptors (nitrate/nitrite, manganese, iron) is more important. In this study, potential for AOM coupled with metal reduction was studied in boreal lake sediments. Slurries of sediment samples collected from two sites in southeastern Finland, i.e. from Lake Orivesi, Heposelkä, an vegetated littoral site, dominated by Phragmites australis (Sample Sa, sediment layer 0 - 25 cm) and from the profundal zone of a mesotrophic Lake Ätäskö (Aa, 0 - 10 cm; Ab, 10 - 30 cm; Ac, 90 - 130 cm), were incubated in laboratory in anaerobic conditions at in situ temperatures for up to 5 months. The samples were amended either 1) with 13CH4, 2) 13CH4 + manganese(II) oxide (MnO) or 3) 13CH4 + iron(III) hydroxide (Fe(OH)3), and the processes were measured by following the 13C transfer to the carbon dioxide (CO2) pool and by concentration measurements of CH4 and CO2. Changes in microbial communities were studied from DNA extracted from sediment samples before and after incubation period by next-generation sequencing (Ion Torrent) of polymerase chain reaction (PCR) - amplified bacterial and archaeal 16S rRNA and methyl coenzyme-M reductase gene (mcrA) amplicons. Increase in 13C of CO2 gas confirmed that AOM took place in sediments of both study lakes. In general, 13CO2 - production was significant both at the beginning (0 - 21 days) and at the end (84 - 151 days) of incubation period. Potential AOM rates (calculated based on 13CO2 - production) varied considerably and were much lower in deep sediment (Sample Ac), 0.1 - 0

Methods to measure sedimentation of spawning gravels

Treesearch

Thomas E. Lisle; Rand E. Eads

1991-01-01

Sediment transport occurring after spawning can cause scour of incubating embryos and infiltration of fine sediment into spawning gravel, decreasing intergravel flow and preventing hatched fry from emerging from the gravel. Documentation of these effects requires measuring gravel conditions before and after high flow periods and combining methods to record scour and...

Microbial Manganese and Sulfate Reduction in Black Sea Shelf Sediments

PubMed Central

Thamdrup, Bo; Rosselló-Mora, Ramón; Amann, Rudolf

2000-01-01

The microbial ecology of anaerobic carbon oxidation processes was investigated in Black Sea shelf sediments from mid-shelf with well-oxygenated bottom water to the oxic-anoxic chemocline at the shelf-break. At all stations, organic carbon (Corg) oxidation rates were rapidly attenuated with depth in anoxically incubated sediment. Dissimilatory Mn reduction was the most important terminal electron-accepting process in the active surface layer to a depth of ∼1 cm, while SO42− reduction accounted for the entire Corg oxidation below. Manganese reduction was supported by moderately high Mn oxide concentrations. A contribution from microbial Fe reduction could not be discerned, and the process was not stimulated by addition of ferrihydrite. Manganese reduction resulted in carbonate precipitation, which complicated the quantification of Corg oxidation rates. The relative contribution of Mn reduction to Corg oxidation in the anaerobic incubations was 25 to 73% at the stations with oxic bottom water. In situ, where Mn reduction must compete with oxygen respiration, the contribution of the process will vary in response to fluctuations in bottom water oxygen concentrations. Total bacterial numbers as well as the detection frequency of bacteria with fluorescent in situ hybridization scaled to the mineralization rates. Most-probable-number enumerations yielded up to 105 cells of acetate-oxidizing Mn-reducing bacteria (MnRB) cm−3, while counts of Fe reducers were <102 cm−3. At two stations, organisms affiliated with Arcobacter were the only types identified from 16S rRNA clone libraries from the highest positive MPN dilutions for MnRB. At the third station, a clone type affiliated with Pelobacter was also observed. Our results delineate a niche for dissimilatory Mn-reducing bacteria in sediments with Mn oxide concentrations greater than ∼10 μmol cm−3 and indicate that bacteria that are specialized in Mn reduction, rather than known Mn and Fe reducers, are important

Incubation temperature causes skewed sex ratios in a precocial bird.

PubMed

DuRant, Sarah E; Hopkins, William A; Carter, Amanda W; Kirkpatrick, Laila T; Navara, Kristin J; Hawley, Dana M

2016-07-01

Many animals with genetic sex determination are nonetheless capable of manipulating sex ratios via behavioral and physiological means, which can sometimes result in fitness benefits to the parent. Sex ratio manipulation in birds is not widely documented, and revealing the mechanisms for altered sex ratios in vertebrates remains a compelling area of research. Incubation temperature is a key component of the developmental environment for birds, but despite its well-documented effects on offspring phenotype it has rarely been considered as a factor in avian sex ratios. Using ecologically relevant manipulations of incubation temperature within the range 35.0-37.0°C, we found greater mortality of female embryos during incubation than males regardless of incubation temperature, and evidence that more female than male embryos die at the lowest incubation temperature (35.0°C). Our findings in conjunction with previous work in brush turkeys suggest incubation temperature is an important determinant of avian secondary sex ratios that requires additional study, and should be considered when estimating the impact of climate change on avian populations. © 2016. Published by The Company of Biologists Ltd.

Laboratory evidence for short and long-term damage to pink salmon incubating in oiled gravel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heintz, R.; Rice, S.; Wiedmer, M.

1995-12-31

Pink salmon, incubating in gravel contaminated with crude oil, demonstrated immediate and delayed responses in the laboratory at doses consistent with the concentrations observed in oiled streams in Prince William Sound. The authors incubated pink salmon embryos in a simulated intertidal environment with gravel contaminated by oil from the Exxon Valdez. During the incubation and emergence periods the authors quantified dose-response curves for characters affected directly by the oil. After emergence, fish were coded wire tagged and released, or cultured in netpens. Delayed responses have been observed among the cultured fish, and further observations will be made when coded wiremore » tagged fish return in September 1995. The experiments have demonstrated that eggs need not contact oiled gravel to experience increased mortality, and doses as low as 17 ppb tPAH in water can have delayed effects on growth. A comparison of sediment tPAH concentrations from streams in Prince William Sound with these laboratory data suggests that many 1989 brood pink salmon were exposed to deleterious quantities of oil.« less

Induced metal redistribution and bioavailability enhancement in contaminated river sediment during in situ biogeochemical remediation.

PubMed

Liu, Tongzhou; Zhang, Zhen; Mao, Yanqing; Yan, Dickson Y S

2016-04-01

In situ sediment remediation using Ca(NO3)2 or CaO2 for odor mitigation and acid volatile sulfide (AVS) and organic pollutant (such as TPH and PAHs) removal was reported in many studies and fieldwork. Yet, the associated effects on metal mobilization and potential distortion in bioavailability were not well documented. In this study, contaminated river sediment was treated by Ca(NO3)2 and CaO2 in bench studies. Through the investigation of AVS removal, organic matter removal, the changes in sediment oxidation-reduction potential (ORP), microbial activity, and other indigenous parameters, the effects on metal bioavailability, bioaccessibility, and fraction redistribution in sediment were evaluated. The major mechanisms for sediment treated by Ca(NO3)2 and CaO2 are biostimulation with indigenous denitrifying bacteria and chemical oxidation, respectively. After applying Ca(NO3)2 and CaO2, the decreases of metal concentrations in the treated sediment were insignificant within a 35-day incubation period. However, the [SEMtot-AVS]/f OC increased near to the effective boundary of toxicity (100 μmol g(-1) organic carbon (OC)), indicating that both bioavailability and bioaccessibility of metals (Cu, Zn, and Ni) to benthic organisms are enhanced after remediation. Metals were found redistributed from relatively stable fractions (oxidizable and residual fractions) to weakly bound fractions (exchangeable and reducible fractions), and the results are in line with the enhanced metal bioavailability. Compared with Ca(NO3)2, CaO2 led to higher enhancement in metal bioavailability and bioaccessibility, and more significant metal redistribution, probably due to its stronger chemical reactive capacity to AVS and sediment organic matter. The reactions in CaO2-treated sediment would probably shift from physicochemical to biochemical heterotrophic oxidation for sediment organic matter degradation. Therefore, further investigation on the long-term metal redistribution and associated

Compositional Characteristics of Dissolved Organic Matter released from the sediment of Han river in Korea.

NASA Astrophysics Data System (ADS)

Oh, H.; Choi, J. H.

2017-12-01

The dissolved organic matter (DOM) has variable characteristics depending on the sources. The DOM of a river is affected by rain water, windborne material, surface and groundwater flow, and sediments. In particular, sediments are sources and sinks of nutrients and pollutants in aquatic ecosystems by supplying large amounts of organic matter. The DOM which absorbs ultraviolet and visible light is called colored dissolved organic matter (CDOM). CDOM is responsible for the optical properties of natural waters in several biogeochemical and photochemical processes and absorbs UV-A (315-400 nm) and UV-B (280-315), which are harmful to aquatic ecosystems (Helms et al., 2008). In this study, we investigated the quantity and quality of DOM and CDOM released from the sediments of Han river which was impacted by anthropogenic activities and hydrologic alternation of 4 Major River Restoration Project. The target area of this study is Gangchenbo (GC), Yeojubo (YJ), and Ipobo(IP) of the Han River, Korea. Sediments and water samples were taken on July and August of 2016 and were incubated at 20° up to 7 days. Absorbance was measured with UV-visible spectrophotometer (Libra S32 PC, Biochrom). Fluorescence intensity determined with Fluorescence EEMs (F-7000, Hitachi). Absorbance and fluorescence intensity were used to calculate Specific Ultraviolet Absorbance (SUVA254), Humification index (HIX), Biological index (BIX), Spectral slope (SR) and component analysis. The DOC concentration increased after 3 days of incubation. According to the SUVA254 analysis, the microbial activity is highest in the initial overlying water of IP. HIX have range of 1.35-4.08, and decrease poly aromatic structures of organic matter during incubation. From the results of the BIX, autochthonous organic matter was released from the sediments. In all sites, Humic-like DOM, Microbial humic-like DOM and Protein-like DOM increased significantly between Day 0 and 3(except Humic-like, Microbial humic-like DOM in

Nitrous oxide production kinetics during nitrate reduction in river sediments.

PubMed

Laverman, Anniet M; Garnier, Josette A; Mounier, Emmanuelle M; Roose-Amsaleg, Céline L

2010-03-01

A significant amount of nitrogen entering river basins is denitrified in riparian zones. The aim of this study was to evaluate the influence of nitrate and carbon concentrations on the kinetic parameters of nitrate reduction as well as nitrous oxide emissions in river sediments in a tributary of the Marne (the Seine basin, France). In order to determine these rates, we used flow-through reactors (FTRs) and slurry incubations; flow-through reactors allow determination of rates on intact sediment slices under controlled conditions compared to sediment homogenization in the often used slurry technique. Maximum nitrate reduction rates (R(m)) ranged between 3.0 and 7.1microg Ng(-1)h(-1), and affinity constant (K(m)) ranged from 7.4 to 30.7mg N-NO(3)(-)L(-1). These values were higher in slurry incubations with an R(m) of 37.9microg Ng(-1)h(-1) and a K(m) of 104mg N-NO(3)(-)L(-1). Nitrous oxide production rates did not follow Michaelis-Menten kinetics, and we deduced a rate constant with an average of 0.7 and 5.4ng Ng(-1)h(-1) for FTR and slurry experiments respectively. The addition of carbon (as acetate) showed that carbon was not limiting nitrate reduction rates in these sediments. Similar rates were obtained for FTR and slurries with carbon addition, confirming the hypothesis that homogenization increases rates due to release of and increasing access to carbon in slurries. Nitrous oxide production rates in FTR with carbon additions were low and represented less than 0.01% of the nitrate reduction rates and were even negligible in slurries. Maximum nitrate reduction rates revealed seasonality with high potential rates in fall and winter and low rates in late spring and summer. Under optimal conditions (anoxia, non-limiting nitrate and carbon), nitrous oxide emission rates were low, but significant (0.01% of the nitrate reduction rates). Copyright 2009 Elsevier Ltd. All rights reserved.

Effect of Redox Conditions on Bacterial Community Structure in Baltic Sea Sediments with Contrasting Phosphorus Fluxes

PubMed Central

Steenbergh, Anne K.; Bodelier, Paul L. E.; Slomp, Caroline P.; Laanbroek, Hendrikus J.

2014-01-01

Phosphorus release from sediments can exacerbate the effect of eutrophication in coastal marine ecosystems. The flux of phosphorus from marine sediments to the overlying water is highly dependent on the redox conditions at the sediment-water interface. Bacteria are key players in the biological processes that release or retain phosphorus in marine sediments. To gain more insight in the role of bacteria in phosphorus release from sediments, we assessed the effect of redox conditions on the structure of bacterial communities. To do so, we incubated surface sediments from four sampling sites in the Baltic Sea under oxic and anoxic conditions and analyzed the fingerprints of the bacterial community structures in these incubations and the original sediments. This paper describes the effects of redox conditions, sampling station, and sample type (DNA, RNA, or whole-cell sample) on bacterial community structure in sediments. Redox conditions explained only 5% of the variance in community structure, and bacterial communities from contrasting redox conditions showed considerable overlap. We conclude that benthic bacterial communities cannot be classified as being typical for oxic or anoxic conditions based on community structure fingerprints. Our results suggest that the overall structure of the benthic bacterial community has only a limited impact on benthic phosphate fluxes in the Baltic Sea. PMID:24667801

Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes.

PubMed

Steenbergh, Anne K; Bodelier, Paul L E; Slomp, Caroline P; Laanbroek, Hendrikus J

2014-01-01

Phosphorus release from sediments can exacerbate the effect of eutrophication in coastal marine ecosystems. The flux of phosphorus from marine sediments to the overlying water is highly dependent on the redox conditions at the sediment-water interface. Bacteria are key players in the biological processes that release or retain phosphorus in marine sediments. To gain more insight in the role of bacteria in phosphorus release from sediments, we assessed the effect of redox conditions on the structure of bacterial communities. To do so, we incubated surface sediments from four sampling sites in the Baltic Sea under oxic and anoxic conditions and analyzed the fingerprints of the bacterial community structures in these incubations and the original sediments. This paper describes the effects of redox conditions, sampling station, and sample type (DNA, RNA, or whole-cell sample) on bacterial community structure in sediments. Redox conditions explained only 5% of the variance in community structure, and bacterial communities from contrasting redox conditions showed considerable overlap. We conclude that benthic bacterial communities cannot be classified as being typical for oxic or anoxic conditions based on community structure fingerprints. Our results suggest that the overall structure of the benthic bacterial community has only a limited impact on benthic phosphate fluxes in the Baltic Sea.

Investigating Microbial Activity in Diazotrophic Methane Seep Sediment via Transcript Analysis and Single-Cell FISH-NanoSIMS

NASA Astrophysics Data System (ADS)

Dekas, A. E.; Connon, S. A.; Chadwick, G.; Orphan, V. J.

2012-12-01

Methane seep microbial ecosystems are phylogenetically diverse and physiologically complex, and require culture-independent techniques to accurately investigate metabolic activity. In the present study we combine an RNA analysis of four key microbial genes with FISH-NanoSIMS analysis of single cells to determine the diversity of nitrogen fixing microorganisms (diazotrophs) present at a deep-sea methane-seeping site, as well as investigate the methane-dependency of a variety of community members. Recently, methane-dependent nitrogen fixation was observed in Mound 12 Costa Rica sediments, and was spatially correlated with the abundance of aggregates of anaerobic methanotrophic archaea (ANME) and sulfate reducing bacterial symbionts (SRB). Combined with the detection of 15N uptake from 15N2 in these aggregates, this suggested that the ANME-SRB aggregates are the primary diazotrophs in seep sediment. However, the diversity of dinitrogenase reductase (nifH) sequences recovered from several deep-sea locales, including Mound 12, suggests a greater diversity of diazotrophs in marine sediment. To investigate the activity of these potential diazotrophs in Mound 12 sediment, we investigated a suite of RNA transcripts in 15N2 incubations in both the presence and absence of methane: nifH, bacterial 16S rRNA, methyl coenzyme M reductase A (mcrA), and adenosine-5'-phosposulfate reductase alpha subunit (aprA). No nifH transcripts were recovered in incubations without methane, consistent with previous measurements lacking 15N2 uptake in the same sediments. The activity of the bacterial community in general, assessed by variable transcription, was also greatly affected by the presence or absence of methane. Single-cell fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS) was employed to confirm diazotrophic activity (15N2 uptake) and protein synthesis (15NH4+ uptake) of particular species implicated as ecologically important by the

Experimental Studies of Incubation: Searching for the Elusive.

ERIC Educational Resources Information Center

Olton, Robert M.

1979-01-01

The author discusses the phenomenon of incubation in creative problem solving, distinguishes it from "creative worrying" and "tip of the tongue" experiences, and reviews research to indicate a lack of evidence of incubation's existence in well-controlled studies. Note: For related information, see EC 120 232-238. (CL)

Effect of nitrate, organic carbon, and temperature on potential denitrification rates in nitrate-rich riverbed sediments

USGS Publications Warehouse

Pfenning, K.S.; McMahon, P.B.

1997-01-01

A study conducted in 1994 as part of the US Geological Survey's National Water-Quality Assessment Program, South Platte River Basin investigation, examined the effect of certain environmental factors on potential denitrification rates in nitrate-rich riverbed sediments. The acetylene block technique was used to measure nitrous oxide (N2O) production rates in laboratory incubations of riverbed sediments to evaluate the effect of varying nitrate concentrations, organic carbon concentrations and type, and water temperature on potential denitrification rates. Sediment incubations amended with nitrate, at concentrations ranging from 357 to 2142 ??mol l-1 (as measured in the field), produced no significant increase (P > 0.05) in N2O production rates, indicating that the denitrification potential in these sediments was not nitrate limited. In contrast, incubations amended with acetate as a source of organic carbon, at concentrations ranging from 0 to 624 ??mol l-1, produced significant increases (P < 0.05) in N2O production rates with increased organic carbon concentration, indicating that the denitrification potential in these sediments was organic carbon limited. Furthermore, N2O production rates also were affected by the type of organic carbon available as an electron donor. Acetate and surface-water-derived fulvic acid supported higher N2O production rates than groundwater-derived fulvic acid or sedimentary organic carbon. Lowering incubation temperatures from 22 to 4??C resulted in about a 77% decrease in the N2O production rates. These results help to explain findings from previous studies indicating that only 15-30% of nitrate in groundwater was denitrified before discharging to the South Platte River and that nitrate concentrations in the river generally were higher in winter than in summer.

Anaerobic hydrocarbon degradation in petroleum-contaminated harbor sediments under sulfate-reducing and artificially imposed iron-reducing conditions

USGS Publications Warehouse

Coates, J.D.; Anderson, R.T.; Woodward, J.C.; Phillips, E.J.P.; Lovley, D.R.

1996-01-01

The potential use of iron(III) oxide to stimulate in-situ hydrocarbon degradation in anaerobic petroleum-contaminated harbor sediments was investigated. Previous studies have indicated that Fe(III)-reducing bacteria (FeRB) can oxidize some electron donors more effectively than sulfate- reducing bacteria (SRB). In contrast to previous results in freshwater sediments, the addition of Fe(III) to marine sediments from San Diego Bay, CA did not switch the terminal electron-accepting process (TEAP) from sulfate reduction to Fe-(III) reduction. Addition of Fe(III) also did not stimulate anaerobic hydrocarbon oxidation. Exposure of the sediment to air [to reoxidize Fe(II) to Fe(III)] followed by anaerobic incubation of the sediments, resulted in Fe-(III) reduction as the TEAP, but contaminant degradation was not stimulated and in some instances was inhibited. The difference in the ability of FeRB to compete with the SRB in the different sediment treatments was related to relative population sizes. Although the addition of Fe(III) did not stimulate hydrocarbon degradation, the results presented here as well as other recent studies demonstrate that there may be significant anaerobic hydrocarbon degradation under sulfate-reducing conditions in harbor sediments.

Mercury methylation in sediments of a Brazilian mangrove under different vegetation covers and salinities.

PubMed

de Oliveira, Diana Ciannella Martins; Correia, Raquel Rose Silva; Marinho, Claudio Cardoso; Guimarães, Jean Remy Davée

2015-05-01

The presence and formation of methylmercury (MMHg), a highly toxic form of Hg, in mangrove ecosystems is poorly studied. Therefore the aim of this study was to evaluate mercury methylation potentials in sediment, litter and root samples (Avicennia shaueriana and Spartina alterniflora) from different regions of a mangrove ecosystem, as well as the influence of salinity on methylation. Sediment was sampled under different depths and in mangrove regions with different plant covers and salinities. All samples were incubated with (203)Hg and MM(203)Hg was extracted and measured by liquid scintillation. MMHg was formed in all samples and sites tested including plant roots and litter. Higher Hg methylation was found in the superficial fraction of sediments (0.47-7.82%). Infralittoral sandy sediment had low MMHg formation (0.44-1.61%). Sediment under Rhizophora mangle had lower MMHg formation (0.018-2.23%) than under A. shaueriana (0.2-4.63%) and Laguncularia racemosa (0.08-7.82). MMHg formation in sediment tended to increase with salinity but the differences were not significant. Therefore, MMHg formation occurs in different sites of mangrove ecosystems and may be an important threat that requires further study. Copyright © 2015 Elsevier Ltd. All rights reserved.

Methane and Carbon Dioxide Production Rates in Lake Sediments from Sub-Arctic Sweden

NASA Astrophysics Data System (ADS)

DeStasio, J.; Halloran, M.; Erickson, L. M.; Varner, R. K.; Johnson, J. E.; Setera, J.; Prado, M. F.; Wik, M.; Crill, P. M.

2013-12-01

Ecosystems at high latitudes are undergoing rapid change due to amplified arctic warming. Lakes in these regions are sources of both methane (CH4) and carbon dioxide (CO2) to the atmosphere and will likely be impacted by elevated temperatures. Because of the potential increase in the release of organic carbon due to thawing permafrost, it is believed that methanogenesis rates within neighboring fresh water sediments will display a positive feedback response, by increasing CH4 emission to the atmosphere. We studied CH4 production potential of sediments using cores from three lakes in the Stordalen Mire complex in sub-Arctic, Sweden: Inre Harrsjön, Mellan Harrsjön, and Villasjön. Sediment cores were incubated to determine CO2 and CH4 production rates and were analyzed for CH4 concentrations, dissolved inorganic carbon (DIC) concentrations, total organic carbon (TOC) concentrations, as well as carbon, nitrogen and sulfur content. Our results from the Villasjön cores indicate that CH4 production rates were highest at the same sediment depths as peak dissolved CH4 concentrations, with maximum values between depths of approximately 10cm and 30cm. Additionally, the highest observed CH4 production rates were in sediments from areas within Villasjön known to have the highest rates of CH4 ebullition. CO2 production rates were generally highest within surface sediments ranging from about 4cm to 11cm in depth, with production rates displaying a steady decrease below 11cm. Additionally, observed CO2 production rates correlated with total organic carbon (TOC) concentrations with respect to sediment depth, but displayed no relationship with dissolved inorganic carbon (DIC). Further analysis will be conducted to determine how CH4 and CO2 production characteristics vary between sediment core samples, as well as isotopic analysis of select samples taken from each lake.

Macondo-1 well oil in sediment and tarballs from the northern Gulf of Mexico shoreline

USGS Publications Warehouse

Wong, Florence L.; Rosenbauer, Robert J.; Campbell, Pamela L.; Lam, Angela; Lorenson, T.D.; Hostettler, Frances D.; Thomas, Burt

2011-01-01

From April 20 through July 15, 2010, an estimated 4.4 million barrels (1 barrel = 42 gallons [~700,000 cu m]) of crude oil spilled into the northern Gulf of Mexico (nGOM) from the ruptured British Petroleum (BP) Macondo-1 (M-1) well after the explosion of the drilling platform Deepwater Horizon. In addition, ~1.84 million gallons (~7,000 cu m) of hydrocarbon-based Corexit dispersants were applied to the oil both on and below the sea surface (Operational Science Advisory Team, 2010). An estimate of the total extent of the surface oil slick, derived from wind, ocean currents, aerial photography, and satellite imagery, was 68,000 square miles (~180,000 sq km; Amos and Norse, 2010). Spilled oil from this event impacted sensitive habitat along the shores of the nGOM. In response to this environmental catastrophe, the U.S. Geological Survey (USGS) collected coastal sediment and tarball samples along the shores of the nGOM from Texas to Florida before and after oil made landfall. These sites included priority areas of the nGOM at highest risk for oil contamination. These areas included coastal wetlands, shorelines, and barrier islands that could suffer severe environmental damage if a significant amount of oil came ashore. Samples were collected before oil reached land from 69 sites; 49 were revisited to collect samples after oil landfall. This poster focuses on the samples from locations that were sampled on both occasions. The USGS samples and one M-1 well-oil sample provided by BP were analyzed for a suite of diagnostic geochemical biomarkers. Aided by multivariate statistical analysis, the M-1 well oil was not detected in the samples collected before landfall but have been identified in sediment and tarballs collected from Louisiana, Alabama, Mississippi, and Florida after landfall. None of the sediment hydrocarbon extracts from Texas correlated with the M-1 well oil. Oil-impacted sediment is confined to the shoreline adjacent to the cumulative oil slick of the

Developing Rural Business Incubators.

ERIC Educational Resources Information Center

Weinberg, Mark L.; Burnier, DeLysa

1991-01-01

Offers background on rural entrepreneurship and incubation in the United States, with particular focus on rural incubators at community colleges and regional incubation systems. Explains how incubators, which provide shared services and business/management assistance for tenant companies, differ from other entrepreneurial development strategies.…

Incubation temperature fluctuation does not affect incubation length and hatchling phenotype in the Chinese skink Plestiodon chinensis.

PubMed

Qu, Yan-Fu; Lu, Hong-Liang; Li, Hong; Ji, Xiang

2014-12-01

Studies examining the effects of incubation temperature fluctuation on the phenotype of hatchling reptiles have shown species variation. To examine whether incubation temperature fluctuation has a key role in influencing the phenotype of hatchling Chinese skinks (Plestiodon chinensis), we incubated eggs produced by 20 females under five thermal regimes (treatments). Eggs in three treatments were incubated in three incubators, one set constant at 27°C and two ramp-programmed at 27 ± 3°C and 27 ± 5°C on a cycle of 12h (+) and 12h (-). The remaining eggs were incubated in two chambers: one inside a room where temperatures varied from 23.0 to 31.1°C, with a mean of 27.0°C; the other outside the room where temperatures varied from 20.2 to 35.3°C, with a mean of 26.1°C. We found that: (1) for eggs at a given embryonic stage at ovipositon, the mean rather than the variance of incubation temperatures determined the length of incubation; (2) most (egg mass, embryonic stage at oviposition, incubation length and all examined hatchling traits except tail length and locomotor performance) of the examined variables were affected by clutch; and (3) body mass was the only hatchling trait that differed among the five treatments, but the differences were tiny. These findings suggest that incubation temperature fluctuation has no direct role in influencing incubation length and hatchling phenotype in P. chinensis. Copyright © 2014 Elsevier Ltd. All rights reserved.

Molybdenum Cycling in Upwelling Sediments: An Example from Namibian Margin Sediments

NASA Astrophysics Data System (ADS)

Arnold, G. L.; Goldhammer, T.; Formolo, M.; Brunner, B.; Ferdelman, T.

2008-12-01

The paleo-redox application of molybdenum (Mo) isotopes is strongly tied to our knowledge of the modern marine Mo cycle. Elemental mass balance indicates that ~47% of the Mo supplied to the oceans is removed to deep sea sediments, leaving the remaining Mo to "near-shore" reducing sediments (1). The Black Sea is likely the best studied reducing environment with regards to Mo isotopes, yet accounts for only a small fraction of the Mo mass balance. The accumulation of Mo in continental margin sediments has been recently re-assessed and may account for a larger fraction of the marine Mo reservoir than previously thought (2). In the presence of sulfide, the molybdate anion is transformed, by the replacement of oxygen with sulfur, to particle reactive oxy-thiomolybdates (3). This is often cited as the mechanism by which Mo removal proceeds in the Black Sea where sulfide concentrations in the water are high. In contrast, in continental margin settings, the removal mechanism is poorly understood, and the extent to which sulfur cycling plays a role remains un-quantified. To better understand removal/cycling processes in a continental margin setting, where sulfide may only be present in the pore waters and not in the water column, Mo was studied in an array of marine settings off the Namibian coast. Surface sediments were collected across a transect from near-shore/high productivity to deep water/low productivity sediments. These sediments were incubated in bag experiments to study the relationship between sulfur and Mo cycling. Molybdenum concentrations in the Namibian sediments range from detrital values at the lowest productivity site to 25 ppm in surface sediments with high productivity. Preliminary results allude to a correlation between sulfate reduction rates and Mo accumulation in these sediments. Detailed studies of Mo, Mo isotopes, other trace metals, and sulfur investigations from both sediment cores and bag experiments will be presented. (1)Bertine and Turekian

Remote monitoring of parental incubation conditions in the greater sandhill crane

USGS Publications Warehouse

Gee, G.F.; Hatfield, J.; Howey, P.J.

1995-01-01

To monitor incubation conditions in nests of greater sandhill cranes, a radiotransmitting egg was built using six temperature sensors, a position sensor, and a light sensor. Sensor readings were received, along with time of observations, and stored in a computer. The egg was used to monitor incubation in nests of six pairs of cranes during 1987 and 1988. Ambient temperature was also measured. Analysis of covariance (ANCOVA) was used to relate highest egg temperature, core egg temperature, and lowest egg temperature to ambient temperature, time since the egg was last turned, and time since the beginning of incubation. Ambient temperature had the greatest effect on egg temperature (P 0.0001), followed by the time since the beginning of incubation and time since the egg was last turned. Pair effect, the class variable in the ANCOVA. was also very significant (P < 0.0001). A nine-term Fourier series was used to estimate the average core egg temperature versus time of day and was found to fit the data well (r2 = 0.94). The Fourier series will be used to run a mechanical incubator to simulate natural incubation conditions for cranes.

Light scattering method to measure red blood cell aggregation during incubation

NASA Astrophysics Data System (ADS)

Grzegorzewski, B.; Szołna-Chodór, A.; Baryła, J.; DreŻek, D.

2018-01-01

Red blood cell (RBC) aggregation can be observed both in vivo as well as in vitro. This process is a cause of alterations of blood flow in microvascular network. Enhanced RBC aggregation makes oxygen and nutrients delivery difficult. Measurements of RBC aggregation usually give a description of the process for a sample where the state of a solution and cells is well-defined and the system reached an equilibrium. Incubation of RBCs in various solutions is frequently used to study the effects of the solutions on the RBC aggregation. The aggregation parameters are compared before and after incubation while the detailed changes of the parameters during incubation remain unknown. In this paper we have proposed a method to measure red blood cell aggregation during incubation based on the well-known technique where backscattered light is used to assess the parameters of the RBC aggregation. Couette system consisting of two cylinders is adopted in the method. The incubation is observed in the Couette system. In the proposed method following sequence of rotations is adapted. Two minutes rotation is followed by two minutes stop. In this way we have obtained a time series of back scattered intensity consisting of signals respective for disaggregation and aggregation. It is shown that the temporal changes of the intensity manifest changes of RBC aggregation during incubation. To show the ability of the method to assess the effect of incubation time on RBC aggregation the results are shown for solutions that cause an increase of RBC aggregation as well as for the case where the aggregation is decreased.

Modeling the incubation period of inhalational anthrax.

PubMed

Wilkening, Dean A

2008-01-01

Ever since the pioneering work of Philip Sartwell, the incubation period distribution for infectious diseases is most often modeled using a lognormal distribution. Theoretical models based on underlying disease mechanisms in the host are less well developed. This article modifies a theoretical model originally developed by Brookmeyer and others for the inhalational anthrax incubation period distribution in humans by using a more accurate distribution to represent the in vivo bacterial growth phase and by extending the model to represent the time from exposure to death, thereby allowing the model to be fit to nonhuman primate time-to-death data. The resulting incubation period distribution and the dose dependence of the median incubation period are in good agreement with human data from the 1979 accidental atmospheric anthrax release in Sverdlovsk, Russia, and limited nonhuman primate data. The median incubation period for the Sverdlovsk victims is 9.05 (95% confidence interval = 8.0-10.3) days, shorter than previous estimates, and it is predicted to drop to less than 2.5 days at doses above 10(6) spores. The incubation period distribution is important because the left tail determines the time at which clinical diagnosis or syndromic surveillance systems might first detect an anthrax outbreak based on early symptomatic cases, the entire distribution determines the efficacy of medical intervention-which is determined by the speed of the prophylaxis campaign relative to the incubation period-and the right tail of the distribution influences the recommended duration for antibiotic treatment.

Surge Block Method for Controlling Well Clogging and Sampling Sediment during Bioremediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Wei-min; Watson, David B; Luo, Jian

2013-01-01

A surge block treatment method (i.e. inserting a solid rod plunger with a flat seal that closely fits the casing interior into a well and stocking it up and down) was performed for the rehabilitation of wells clogged with biomass and for the collection of time series sediment samples during in situ bioremediation tests for U(VI) immobilization at a the U.S. Department of Energy site in Oak Ridge, TN. The clogging caused by biomass growth had been controlled by using routine surge block treatment for18 times over a nearly four year test period. The treatment frequency was dependent of themore » dosage of electron donor injection and microbial community developed in the subsurface. Hydraulic tests showed that the apparent aquifer transmissivity at a clogged well with an inner diameter (ID) of 10.16 cm was increased by 8 13 times after the rehabilitation, indicating the effectiveness of the rehabilitation. Simultaneously with the rehabilitation, the surge block method was successfully used for collecting time series sediment samples composed of fine particles (clay and silt) from wells with ID 1.9 10.16 cm for the analysis of mineralogical and geochemical composition and microbial community during the same period. Our results demonstrated that the surge block method provided a cost-effective approach for both well rehabilitation and frequent solid sampling at the same location.« less

Seasonal arsenic accumulation in stream sediments at a groundwater discharge zone.

PubMed

MacKay, Allison A; Gan, Ping; Yu, Ran; Smets, Barth F

2014-01-21

Seasonal changes in arsenic and iron accumulation rates were examined in the sediments of a brook that receives groundwater discharges of arsenic and reduced iron. Clean glass bead columns were deployed in sediments for known periods over the annual hydrologic cycle to monitor changes in arsenic and iron concentrations in bead coatings. The highest accumulation rates occurred during the dry summer period (July-October) when groundwater discharges were likely greatest at the sample locations. The intermediate flow period (October-March), with higher surface water levels, was associated with losses of arsenic and iron from bead column coatings at depths below 2-6 cm. Batch incubations indicated iron releases from solids to be induced by biological reduction of iron (oxy)hydroxide solids. Congruent arsenic releases during incubation were limited by the high arsenic sorption capacity (0.536 mg(As)/mg(Fe)) of unreacted iron oxide solids. The flooded spring (March-June) with high surface water flows showed the lowest arsenic and iron accumulation rates in the sediments. Comparisons of accumulation rates across a shoreline transect were consistent with greater rates at regions exposed above surface water levels for longer times and greater losses at locations submerged below surface water. Iron (oxy)hydroxide solids in the shallowest sediments likely serve as a passive barrier to sorb arsenic released to pore water at depth by biological iron reduction.

Use of hydrogen peroxide during incubation of landlocked fall Chinook salmon eggs in vertical-flow incubators

USGS Publications Warehouse

Barnes, M.E.; Gaikowski, M.P.

2004-01-01

Six different hydrogen peroxide treatment regimes were evaluated in a series of three trials with landlocked fall Chinook salmon Oncorhynchus tshawytscha eggs incubated in vertical-flow incubators. Six daily 15-min hydrogen peroxide treatment regimes (1,000 mg/L; 1,000 mg/L with a decrease to 500 mg/L during estimated blastopore formation; 2,000 mg/L; 2,000 mg/L with a decrease to 500 mg/L during estimated blastopore formation; 2,500 mg/L; and 2,500 mg/L with a decrease to 500 mg/L during estimated blastopore formation) were compared with daily 15-min treatments of 1,667 mg/L of formalin. Mortality at egg eye-up and fry hatch and from eye-up to hatch was significantly greater in eggs receiving the 2,500-mg/L hydrogen peroxide treatments throughout incubation and in those receiving 2,500 mg/L hydrogen peroxide with a decrease to 500 mg/L during blastopore formation than in either of the 1,000-mg/L hydrogen peroxide treatment regimes or the formalin-treated eggs in the first trial. No significant differences in mortality were observed among any of the treatments in the subsequent two trials with maximum hydrogen peroxide concentrations of 2,000 mg/L. Fungal infestations were observed primarily in the incubation trays treated at either of the 1,000-mg/L hydrogen peroxide regimens, as well as in those trays whose treatment concentrations were dropped to 500 mg/L during blastopore formation. Infestations were not observed in any of the formalin-treated trays. If minor fungal infestation is acceptable, then daily hydrogen peroxide treatments of 1,000 mg/L for 15 min would probably provide adequate fungal control compared with formalin usage.

Cable Bacteria in Freshwater Sediments

PubMed Central

Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

2015-01-01

In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures and electric fields indicated electron transfer between vertically separated anodic and cathodic half-reactions. Fluorescence in situ hybridization revealed the presence of Desulfobulbaceae filaments. In addition, in situ measurements of oxygen, pH, and electric potential distributions in the waterlogged banks of Giber Å demonstrated the presence of distant electric redox coupling in naturally occurring freshwater sediment. At the same site, filamentous Desulfobulbaceae with cable bacterium morphology were found to be present. Their 16S rRNA gene sequence placed them as a distinct sister group to the known marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary origin of the cable phenotype within Desulfobulbaceae with subsequent diversification into a freshwater and a marine lineage. PMID:26116678

Incubation and Intuition in Creative Problem Solving.

PubMed

Gilhooly, Kenneth J

2016-01-01

Creative problem solving, in which novel solutions are required, has often been seen as involving a special role for unconscious processes (Unconscious Work) which can lead to sudden intuitive solutions (insights) when a problem is set aside during incubation periods. This notion of Unconscious Work during incubation periods is supported by a review of experimental studies and particularly by studies using the Immediate Incubation paradigm. Other explanations for incubation effects, in terms of Intermittent Work or Beneficial Forgetting are considered. Some recent studies of divergent thinking, using the Alternative Uses task, carried out in my laboratory regarding Immediate vs. Delayed Incubation and the effects of resource competition from interpolated activities are discussed. These studies supported a role for Unconscious Work as against Intermittent Conscious work or Beneficial Forgetting in incubation.

Incubation and Intuition in Creative Problem Solving

PubMed Central

Gilhooly, Kenneth J.

2016-01-01

Creative problem solving, in which novel solutions are required, has often been seen as involving a special role for unconscious processes (Unconscious Work) which can lead to sudden intuitive solutions (insights) when a problem is set aside during incubation periods. This notion of Unconscious Work during incubation periods is supported by a review of experimental studies and particularly by studies using the Immediate Incubation paradigm. Other explanations for incubation effects, in terms of Intermittent Work or Beneficial Forgetting are considered. Some recent studies of divergent thinking, using the Alternative Uses task, carried out in my laboratory regarding Immediate vs. Delayed Incubation and the effects of resource competition from interpolated activities are discussed. These studies supported a role for Unconscious Work as against Intermittent Conscious work or Beneficial Forgetting in incubation. PMID:27499745

Functional trait responses to sediment deposition reduce macrofauna-mediated ecosystem functioning in an estuarine mudflat

NASA Astrophysics Data System (ADS)

Mestdagh, Sebastiaan; Bagaço, Leila; Braeckman, Ulrike; Ysebaert, Tom; De Smet, Bart; Moens, Tom; Van Colen, Carl

2018-05-01

Human activities, among which dredging and land use change in river basins, are altering estuarine ecosystems. These activities may result in changes in sedimentary processes, affecting biodiversity of sediment macrofauna. As macrofauna controls sediment chemistry and fluxes of energy and matter between water column and sediment, changes in the structure of macrobenthic communities could affect the functioning of an entire ecosystem. We assessed the impact of sediment deposition on intertidal macrobenthic communities and on rates of an important ecosystem function, i.e. sediment community oxygen consumption (SCOC). An experiment was performed with undisturbed sediment samples from the Scheldt river estuary (SW Netherlands). The samples were subjected to four sedimentation regimes: one control and three with a deposited sediment layer of 1, 2 or 5 cm. Oxygen consumption was measured during incubation at ambient temperature. Luminophores applied at the surface, and a seawater-bromide mixture, served as tracers for bioturbation and bio-irrigation, respectively. After incubation, the macrofauna was extracted, identified, and counted and then classified into functional groups based on motility and sediment reworking capacity. Total macrofaunal densities dropped already under the thinnest deposits. The most affected fauna were surficial and low-motility animals, occurring at high densities in the control. Their mortality resulted in a drop in SCOC, which decreased steadily with increasing deposit thickness, while bio-irrigation and bioturbation activity showed increases in the lower sediment deposition regimes but decreases in the more extreme treatments. The initial increased activity likely counteracted the effects of the drop in low-motility, surficial fauna densities, resulting in a steady rather than sudden fall in oxygen consumption. We conclude that the functional identity in terms of motility and sediment reworking can be crucial in our understanding of the

Short Nissl staining for incubated cryostat sections of the brain.

PubMed

Lindroos, O F

1991-01-01

Nissl stain often binds poorly to cryostat sections which have been incubated in solutions of radiolabeled ligands. Such incubation is used in receptor autoradiography of the brain when using the in vitro method. We have developed a rapid (16 min) modification of Nissl staining for sections that bind stain poorly, e.g., incubated sections. The method stains well sections which cannot be stained with other rapid Nissl staining methods.

Effects of caffeine supplementation in post-thaw human semen over different incubation periods.

PubMed

Pariz, J R; Hallak, J

2016-11-01

This study aimed to evaluate the effects of caffeine supplementation in post-cryopreservation human semen over different incubation periods. After collection by masturbation, 17 semen samples were analysed according to World Health Organization criteria, processed and cryopreserved with TEST-yolk buffer (1 : 1) in liquid nitrogen. After a thawing protocol, samples were incubated with 2 mm of caffeine for 0, 5, 15, 30 or 60 min, followed by analysis of motility and mitochondrial activity using 3,3'-diaminobenzidine (DAB). Mean variance analysis was performed, and P < 0.05 was the adopted significance threshold. Samples incubated for 15 min showed increased progressive motility compared to other periods of incubation, as well as a reduced percentage of immotile spermatozoa (P < 0.05). In samples incubated for 5 min, increased mitochondrial activity above 50% was observed (DABI and DABII). Although cryosurvival rates were low after the cryopreservation process, incubation with caffeine was associated with an increase in sperm motility, particularly 15-min incubation, suggesting that incubation with caffeine can be an important tool in patients with worsening seminal quality undergoing infertility treatment. © 2016 Blackwell Verlag GmbH.

Some Incubated Thoughts on Incubation.

ERIC Educational Resources Information Center

Guilford, J. P.

1979-01-01

The author reviews research and theory about the role of incubation (a period in which there is no apparent activity toward problem solving but some progress toward a solution occurs) in creative thinking. Note: For related information, see EC 120 233-238. (CL)

Study of phosphate release from Bogor botanical gardens’ sediment into pore water using diffusive gradient in thin film (DGT)

NASA Astrophysics Data System (ADS)

Tirta, A. P.; Saefumillah, A.; Foliatini

2017-04-01

Eutrophication is one of the environmental problems caused by the excessive nutrients in aquatic ecosystems. In most lakes, phosphate is a limiting nutrient for algae photosynthesis. Even though the concentration of phosphate from external loading into the water body has been reduced, eutrophication could still be occured due to internal mobilization of phosphate from the sediment pore water into the overlying water. Therefore, the released phosphate from sediments and their interaction in the pore water must be included in the monitoring of phosphate concentration in aquatic system. The released phosphate from sediment into pore water has been studied by DGT device with ferrihydrite as binding gel and N-N‧-methylenebisacrylamide as crosslinker. The results showed that DGT with 15% acrylamide; 0.1 % N-N‧-methylenebisacrylamide and ferrihydrite as binding gel was suitable for the measurement of the released phosphate from sediment into pore water. The result of the deployed DGT in oxic and anoxic conditions in seven days incubation showed the released phosphate process from the sediment into pore water was affected by incubation time and the existence of oxygen in the environment. The released phosphate from the sediment into pore water in anoxic condition has a higher value than oxic condition. The experimental results of the deployed DGT in natural sediment core at a depth of 1 to 15 cm from the surface of the water for 7 days showed that the sediment has a different phosphate mass profile based on depth. The concentration of phosphate tends to be increased with depth. The maximum CDGT of phosphate released in oxic and anoxic conditions at 7th day period of incubation are 29.23 μg/L at 14 cm depth and 30.19 μg/L at 8 cm depth, respectively.

The Leucine Incorporation Method Estimates Bacterial Growth Equally Well in Both Oxic and Anoxic Lake Waters

PubMed Central

Bastviken, David; Tranvik, Lars

2001-01-01

Bacterial biomass production is often estimated from incorporation of radioactively labeled leucine into protein, in both oxic and anoxic waters and sediments. However, the validity of the method in anoxic environments has so far not been tested. We compared the leucine incorporation of bacterial assemblages growing in oxic and anoxic waters from three lakes differing in nutrient and humic contents. The method was modified to avoid O2 contamination by performing the incubation in syringes. Isotope saturation levels in oxic and anoxic waters were determined, and leucine incorporation rates were compared to microscopically observed bacterial growth. Finally, we evaluated the effects of O2 contamination during incubation with leucine, as well as the potential effects of a headspace in the incubation vessel. Isotope saturation occurred at a leucine concentration of above about 50 nM in both oxic and anoxic waters from all three lakes. Leucine incorporation rates were linearly correlated to observed growth, and there was no significant difference between oxic and anoxic conditions. O2 contamination of anoxic water during 1-h incubations with leucine had no detectable impact on the incorporation rate, while a headspace in the incubation vessel caused leucine incorporation to increase in both anoxic and O2-contaminated samples. The results indicate that the leucine incorporation method relates equally to bacterial growth rates under oxic and anoxic conditions and that incubation should be performed without a headspace. PMID:11425702

Forced Incubation.

ERIC Educational Resources Information Center

Wells, Donald H.

1996-01-01

A survey of 98 college professors regarding their creative writing habits and productivity found that creative productivity was significantly correlated with the use of forced incubation (deliberate time delay to allow naturally unenhanced incubation of ideas to occur). Professors who intentionally set aside manuscripts for a period of time to…

Designing a Low-Cost Multifunctional Infant Incubator.

PubMed

Tran, Kevin; Gibson, Aaron; Wong, Don; Tilahun, Dagmawi; Selock, Nicholas; Good, Theresa; Ram, Geetha; Tolosa, Leah; Tolosa, Michael; Kostov, Yordan; Woo, Hyung Chul; Frizzell, Michael; Fulda, Victor; Gopinath, Ramya; Prasad, J Shashidhara; Sudarshan, Hanumappa; Venkatesan, Arunkumar; Kumar, V Sashi; Shylaja, N; Rao, Govind

2014-06-01

Every year, an unacceptably large number of infant deaths occur in developing nations, with premature birth and asphyxia being two of the leading causes. A well-regulated thermal environment is critical for neonatal survival. Advanced incubators currently exist, but they are far too expensive to meet the needs of developing nations. We are developing a thermodynamically advanced low-cost incubator suitable for operation in a low-resource environment. Our design features three innovations: (1) a disposable baby chamber to reduce infant mortality due to nosocomial infections, (2) a passive cooling mechanism using low-cost heat pipes and evaporative cooling from locally found clay pots, and (3) insulated panels and a thermal bank consisting of water that effectively preserve and store heat. We developed a prototype incubator and visited and presented our design to our partnership hospital site in Mysore, India. After obtaining feedback, we have determined realistic, nontrivial design requirements and constraints in order to develop a new prototype incubator for clinical trials in hospitals in India. © 2014 Society for Laboratory Automation and Screening.

Cold Spots in Neonatal Incubators Are Hot Spots for Microbial Contamination▿

PubMed Central

de Goffau, Marcus C.; Bergman, Klasien A.; de Vries, Hendrik J.; Meessen, Nico E. L.; Degener, John E.; van Dijl, Jan Maarten; Harmsen, Hermie J. M.

2011-01-01

Thermal stability is essential for the survival and well-being of preterm neonates. This is achieved in neonatal incubators by raising the ambient temperature and humidity to sufficiently high levels. However, potentially pathogenic microorganisms also can thrive in such warm and humid environments. We therefore investigated whether the level of microbial contamination (i.e., the bacterial load) inside neonatal incubators can be predicted on the basis of their average temperature and relative humidity settings, paying special attention to local temperature differences. Swab samples were taken from the warmest and coldest spots found within Caleo incubators, and these were plated to determine the number of microbial CFU per location. In incubators with high average temperature (≥34°C) and relative humidity (≥60%) values, the level of microbial contamination was significantly higher at cold spots than at hot spots. This relates to the fact that the local equilibrium relative humidity at cold spots is sufficiently high to sustain microbial growth. The abundance of staphylococci, which are the main causative agents of late-onset sepsis in preterm neonates, was found to be elevated significantly in cold areas. These findings can be used to improve basic incubator hygiene. PMID:22003021

Responses of bacterial communities in seagrass sediments to polycyclic aromatic hydrocarbon-induced stress.

PubMed

Ling, Juan; Jiang, Yu-Feng; Wang, You-Shao; Dong, Jun-De; Zhang, Yan-Ying; Zhang, Yuan-Zhou

2015-10-01

The seagrass meadows represent one of the highest productive marine ecosystems, and have the great ecological and economic values. Bacteria play important roles in energy flow, nutrient biogeochemical cycle and organic matter turnover in marine ecosystems. The seagrass meadows are experiencing a world-wide decline, and the pollution is one of the main reasons. Polycyclic aromatic hydrocarbons (PAHs) are thought be the most common. Bacterial communities in the seagrass Enhalus acoroides sediments were analyzed for their responses to PAHs induced stress. Dynamics of the composition and abundance of bacterial communities during the incubation period were explored by polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) and quantitative PCR assay, respectively. Both the incubation time and the PAHs concentration played significant roles in determining the microbial diversity, as reflected by the detected DGGE bands. Analysis of sequencing results showed that the Gammaproteobacteria were dominant in the seagrass sediments, accounting for 61.29 % of all sequenced bands. As PAHs could be used as carbon source for microbes, the species and diversity of the PAH-added groups (group 1 and 2) presented higher Shannon Wiener index than the group CK, with the group 1 showing the highest values almost through the same incubation stage. Patterns of changes in abundance of the three groups over the experiment time were quite different. The bacterial abundance of the group CK and group 2 decreased sharply from 4.15 × 10(11) and 6.37 × 10(11) to 1.17 × 10(10) and 1.07 × 10(10) copies/g from day 2 to 35, respectively while bacterial abundance of group 1 increased significantly from 1.59 × 10(11) copies/g at day 2 to 8.80 × 10(11) copies/g at day 7, and then dropped from day 14 till the end of the incubation. Statistical analysis (UMPGA and PCA) results suggested that the bacterial community were more likely to be affected by the incubation time than the

The relationship of oocyte diameter and incubation temperature to incubation time in temperate freshwater fish species.

PubMed

Teletchea, F; Gardeur, J-N; Kamler, E; Fontaine, P

2009-02-01

Based on the analysis of six egg variables and incubation temperature of 65 temperate freshwater fish species, the possible relationships between oocyte diameter, incubation time and incubation temperature were reassessed and compared to the results obtained from marine fishes. Most freshwater species have eggs (mean +/-s.d. 2.19 +/- 1.52 mm) larger than marine species, that are chiefly demersal and develop stuck to various substrata, such as plants or rocks. A strong negative relationship was found between incubation time (t, days) and incubation temperature (T, degrees C): t = 186.23e(-0.197T) (r(2)= 0.87). A strong dependence of incubation time on oocyte diameter (Ø, mm) and incubation temperature was also found and was defined as: log(10)t= 3.002 + 0.599 log(10)Ø - 1.91 log(10) (T + 2), which explained 92% of the variance of the data set. Five major groups of species were defined based on the principal component analysis (PCA) of four quantitative variables. There were two distinct groups of salmonids, displaying demersal and non-adhesive eggs with a long incubation time at low temperature, the eggs of which required a high number of degree-days. There was a large group of species possessing small, mostly demersal and adhesive eggs developing at high temperature during a short period of time, and requiring a low number of degree-days. Between these two extremes, there was a fourth group displaying intermediate values and a fifth group including three species with large, adhesive and demersal eggs incubating at high temperatures during a short period of time. The burbot Lota lota displayed an unusual combination of variables compared to the remaining species in the data set.

Production of carbonate sediments by a unicellular green alga

USGS Publications Warehouse

Yates, K.K.; Robbins, L.L.

1998-01-01

This study investigates the ability of the unicellular green alga Natmochloris atoimis to precipitate CaCO3, quantifies mineral precipitation rates, estimates sediment production in a N. atomiis bloom, and discusses the implications of microbial calcification for carbonate sediment deposition. A series of N. atomus cultures, isolated from Lake Reeve, Australia, were incubated at various pH and calcium concentrations to determine environmental parameters for calcification. Rates of calcification were calculated from initial and postincubation alkalinity, pH, and calcium measurements. Replicate experiments and controls consisting of non-calcifying cultures, uninoculated media, and dead cell cultures were performed using environmental culture parameters determined in series cultures. Average calcification rates from replicate experiments were used to predict daily sediment production rates in a small bloom of N. atomus. N. atomus precipitates 0.138 g/L of calcite in approximately 4 h when incubated at pH 8.5, 14.24 mM calcium concentration, 33 ??C, 100 ??E/m2/s light intensity, and a cell population density of 107 cells/mL. Assuming continuous precipitation, this corresponds to a maximum estimated sediment production rate of 1.6 ?? 106 kg of CaCO3, per 12 h day in a single bloom of 3.2 ?? 109 L. Our results suggest that microbial calcification contributes significantly to the carbonate sediment budget.

Electricity generation by anaerobic bacteria and anoxic sediments from hypersaline soda lakes

USGS Publications Warehouse

Miller, L.G.; Oremland, R.S.

2008-01-01

Anaerobic bacteria and anoxic sediments from soda lakes produced electricity in microbial fuel cells (MFCs). No electricity was generated in the absence of bacterial metabolism. Arsenate respiring bacteria isolated from moderately hypersaline Mono Lake (Bacillus selenitireducens), and salt-saturated Searles Lake, CA (strain SLAS-1) oxidized lactate using arsenate as the electron acceptor. However, these cultures grew equally well without added arsenate using the MFC anode as their electron acceptor, and in the process oxidized lactate more efficiently. The decrease in electricity generation by consumption of added alternative electron acceptors (i.e. arsenate) which competed with the anode for available electrons proved to be a useful indicator of microbial activity and hence life in the fuel cells. Shaken sediment slurries from these two lakes also generated electricity, with or without added lactate. Hydrogen added to sediment slurries was consumed but did not stimulate electricity production. Finally, electricity was generated in statically incubated "intact" sediment cores from these lakes. More power was produced in sediment from Mono Lake than from Searles Lake, however microbial fuel cells could detect low levels of metabolism operating under moderate and extreme conditions of salt stress. ?? 2008 US Government.

In-situ subaqueous capping of mercury-contaminated sediments in a fresh-water aquatic system, Part I-Bench-scale microcosm study to assess methylmercury production.

PubMed

Randall, Paul M; Fimmen, Ryan; Lal, Vivek; Darlington, Ramona

2013-08-01

Bench-scale microcosm experiments were designed to provide a better understanding of the potential for Hg methylation in sediments from an aquatic environment. Experiments were conducted to examine the function of sulfate concentration, lactate concentration, the presence/absence of an aqueous inorganic Hg spike, and the presence/absence of inoculums of Desulfovibrio desulfuricans, a strain of sulfate-reducing bacteria (SRB) commonly found in the natural sediments of aquatic environments. Incubations were analyzed for both the rate and extent of (methylmercury) MeHg production. Methylation rates were estimated by analyzing MeHg and Hg after 2, 7, 14, 28, and 42 days. The production of metabolic byproducts, including dissolved gases as a proxy for metabolic utilization of carbon substrate, was also monitored. In all treatments amended with lactate, sulfate, Hg, and SRB, MeHg was produced (37ng/g-sediment dry weight) after only 48h of incubation and reached a maximum sediment concentration of 127ng/g-sediment dry weight after the 42 day incubation period. Aqueous phase production of MeHg was observed to be 10ng/L after 2 day, reaching a maximum observed concentration of 32.8ng/L after 14 days, and declining to 10.8ng/L at the end of the incubation period (42 day). The results of this study further demonstrates that, in the presence of an organic carbon substrate, sulfate, and the appropriate consortia of microorganisms, sedimentary Hg will be transformed into MeHg through bacterial metabolism. Further, this study provided the basis for evaluation of an in-situ subaqueous capping strategy that may limit (or potentially enhance) MeHg production. Published by Elsevier Inc.

Chemical controls on abiotic and biotic release of geogenic arsenic from Pleistocene aquifer sediments to groundwater.

PubMed

Gillispie, Elizabeth C; Andujar, Erika; Polizzotto, Matthew L

2016-08-10

Over 150 million people in South and Southeast Asia consume unsafe drinking water from arsenic-rich Holocene aquifers. Although use of As-free water from Pleistocene aquifers is a potential mitigation strategy, such aquifers are vulnerable to geogenic As pollution, placing millions more people at potential risk. The goal of this research was to define chemical controls on abiotic and biotic release of geogenic As to groundwater. Batch incubations of sediments with natural chemical variability from a Pleistocene aquifer in Cambodia were conducted to evaluate how interactions among arsenic, manganese and iron oxides, and dissolved and sedimentary organic carbon influenced As mobilization from sediments. The addition of labile dissolved organic carbon produced the highest concentrations of dissolved As after >7 months, as compared to sediment samples incubated with sodium azide or without added carbon, and the extent of As release was positively correlated with the percent of initial extractable Mn released from the sediments. The mode of As release was impacted by the source of DOC supplied to the sediments, with biological processes responsible for 81% to 85% of the total As release following incubations with lactate and acetate but only up to 43% to 61% of the total As release following incubations with humic and fulvic acids. Overall, cycling of key redox-active elements and organic-carbon reactivity govern the potential for geogenic As release to groundwater, and results here may be used to formulate better predictions of the arsenic pollution potential of aquifers in South and Southeast Asia.

Metabolism of niclosamide in sediment and water systems

USGS Publications Warehouse

Graebing, P.W.; Chib, J.S.; Hubert, T.D.; Gingerich, W.H.

2004-01-01

A series of experiments analyzed the kinetics and mechanisms of [ 14C]niclosamide degradation. The aerobic aquatic metabolism of [ 14C]niclosamide was studied in nonsterile river water/sediment mixtures. Test systems, maintained under aerobic conditions, were treated with niclosamide and incubated in the dark at 25.0 ?? 1.0 ??C for 30 days. Half-lives of 4.9 and 5.4 days were calculated for the chlorosalicylic acid- and chloronitroaniline-labeled test systems, respectively. From 0 to 21 days after treatment (DAT), the only metabolism product observed in either test system was aminoniclosamide. At the final sampling interval, five peaks were resolved from the chlorosalicylic acid label, and three peaks were resolved from the chloronitroaniline label test substance. By 30 DAT, sediment-bound residues represented ???70% of the observed radioactivity. For the anaerobic aquatic metabolism of [14C]niclosamide, test systems were incubated under anaerobic conditions for 365 days. Half-lives of 0.65 day for the chlorosalicylic acid label and 2.79 days for the chloronitroaniline label were calculated. From 0 to 3 DAT, niclosamide was first transformed into aminoniclosamide. Aminoniclosamide is readily formed, as it was observed in the chlorosalicylic acid label 0 DAT sampling. Several minor metabolites were observed in the water and sediment extracts. None of these metabolites were formed to a significant amount until the parent niclosamide dissipated below the detection limit. Two of the byproducts from these metabolism studies are polar unknowns eluting at 3 and 5 min by HPLC, similar to the unknowns observed in aqueous photolysis studies.

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment

PubMed Central

Case, David H.; Ijiri, Akira; Morono, Yuki; Tavormina, Patricia; Orphan, Victoria J.; Inagaki, Fumio

2017-01-01

High-pressure (HP) environments represent the largest volumetric majority of habitable space for microorganisms on the planet, including the deep-sea and subsurface biosphere. However, the importance of pressure as an environmental variable affecting deep microbial life and their biogeochemical functions in carbon cycling still remains poorly understood. Here, we designed a new high-volume HP-sediment core sampler that is deployable on the payload of a remotely operated vehicle and can maintain in situ HP conditions throughout multi-month enrichment incubations including daily amendments with liquid media and gases and daily effluent sampling for geochemical or microbiological analysis. Using the HP core device, we incubated sediment and overlying water associated with methane hydrate-exposed on the seafloor of the Joetsu Knoll, Japan, at 10 MPa and 4°C for 45 days in the laboratory. Diversity analyses based on 16S rRNA and methane-related functional genes, as well as carbon isotopic analysis of methane and bicarbonate, indicated the stimulation of both aerobic and anaerobic methanotrophy driven by members of the Methylococcales, and ANME, respectively: i.e., aerobic methanotrophy was observed upon addition of oxygen whereas anaerobic processes subsequently occurred after oxygen consumption. These laboratory-measured rates at 10 MPa were generally in agreement with previously reported rates of methane oxidation in other oceanographic locations. PMID:29312247

Potential denitrification and nitrous oxide production in the sediments of the Seine River Drainage Network (France).

PubMed

Garnier, Josette A; Mounier, Emmanuelle M; Laverman, Anniet M; Billen, Gilles F

2010-01-01

To investigate bottom sediment denitrification at the scale of the Seine drainage network, a semi-potential denitrification assay was used in which river sediments (and riparian soils) were incubated for a few hours under anaerobic conditions with non limiting nitrate concentrations. This method allowed the nitrous oxide (N(2)O) concentration in the headspace, as well as the nitrate, nitrite, and ammonium concentrations to be determined during incubation. The rates at which nitrate decreased and N(2)O increased were then used to assess the potential denitrification activity and associated N(2)O production in the Seine River Basin. We observed a longitudinal pattern characterized by a significant increase of the potential rate of denitrification from upstream sectors to large downstream rivers (orders 7-8), from approximately 3.3 to 9.1 microg NO(3)(-)-N g(-1) h(-1), respectively, while the N(2)O production rates was the highest both in headwaters and in large order rivers (0.14 and 0.09 N(2)O-N g(-1) h(-1), respectively) and significantly lower in the intermediate sectors (0.01 and 0.03 N(2)O-N g(-1) h(-1)). Consequently, the ratio N(2)O production:NO(3) reduction was found to reach 5% in headstreams, whereas it averaged 1.2% in the rest of the drainage network, an intermediate percentage being found for the riparian soils. Finally, the ignition loss of sediments, together with other redundant variables (particulate organic carbon content: g C 100 g(-1) dry weight [dw], moisture: g water 100 g(-1) dw, sediment size <50 mum: g material size <50 mum 100 g(-1) dw) were found to control these activities. However, the biodegradability of organic matter must be measured to better understand the factor controlling denitrification and its associated N(2)O production.

Air temperature recordings in infant incubators.

PubMed Central

Aynsley-Green, A; Roberton, N R; Rolfe, P

1975-01-01

Air temperatures were continuously recorded inside four incubators with proportional heating control and six incubators with on/off heating cycles, during routine use. The air temperatures in the former were constant throughout, with a gradient between the roof and above-mattress air temperature not exceeding 1 degree C. In contrast, the recordings from the latter models showed a regular cyclical oscillation, the duration of the cycle varying from 14 to 44 minutes. Each incubator had a characteristic profile. The roof air temperature could vary by as much as 7-1 degrees C and the above-mattress air temperature by as much as 2-6 degrees C during the cycle. The oscillation persisted in the air temperatures recorded inside an open-ended hemicylindrical heat shield when used inside these incubators, but was markedly reduced inside a closed-ended heat shield, Carbon dioxide concentration did not increase significantly inside the latter. Images FIG. 1 FIG. 2 PMID:1147654

Rural Incubator Profile.

ERIC Educational Resources Information Center

Weinberg, Mark L.

This profile summarizes the responses of 20 managers of rural business incubators, reporting on their operations, entry and exit policies, facility promotion, service arrangements and economic development outcomes. Incubators assist small businesses in the early stages of growth by providing them with rental space, shared services, management and…

The "cradle of glass": incubators for infants in late nineteenth-century France.

PubMed

Greene, Gina

2010-01-01

This article examines the development of the incubator for premature infants in fin-de-siècle France. During a period of widespread anxiety in France regarding infant mortality and its implications for population growth, physicians in Paris developed and widely promoted the lifesaving technology. This article explores the ways in which the incubator reflected new scientific and symbolic approaches to creating hygienic spaces as well as how it reflected new scientific and symbolic approaches to the traditionally feminine project of infant care. By creating such an isolating and protective milieu around premature infants—an entirely new population of patients—the incubator, I argue, heralded a renegotiation of the boundary between motherhood and medical authority.

The effect of ambient temperature, habitat quality and individual age on incubation behaviour and incubation feeding in a socially monogamous songbird.

PubMed

Amininasab, Seyed Mehdi; Kingma, Sjouke A; Birker, Martje; Hildenbrandt, Hanno; Komdeur, Jan

Incubation is an important aspect of avian life history. The behaviour is energetically costly, and investment in incubation strategies within species, like female nest attentiveness and the feeding by the non-incubating partner during incubation, can therefore vary depending on environmental and individual characteristics. However, little is known about the combined effect of these characteristics. We investigated the importance of ambient temperature, habitat quality, and bird age on female incubation behaviour and male feeding of the incubating female (incubation feeding) in blue tits Cyanistes caeruleus , a socially monogamous songbird. An increase in ambient temperature resulted in a higher nest temperature, and this enabled females to increase the time off the nest for self-maintenance activities. Probably as a consequence of this, an increase in ambient temperature was associated with fewer incubation feedings by the male. Moreover, in areas with more food available (more deciduous trees), females had shorter incubation recesses and males fed females less often. Additionally, males fed young females more, presumably to increase such females' investment in their eggs, which were colder on average (despite the length of recesses and female nest attentiveness being independent of female age). Male age did not affect incubation feeding rate. In conclusion, the patterns of incubation behaviour were related to both environmental and individual characteristics, and male incubation feeding was adjusted to females' need for food according these characteristics, which can facilitate new insights to the study of avian incubation energetics. Parents often invest a substantial amount of energy in raising offspring. How much they do so depends on several environmental factors and on the extent they cooperate to raise the offspring. In birds, males can feed incubating females, which may allow females to stay longer on the nest, which, in turn, may ultimately improve

The Pre-Incubator: A Longitudinal Study of 10 Years of University Pre-Incubation in Wales

ERIC Educational Resources Information Center

Voisey, Pamela; Jones, Paul; Thomas, Brychan

2013-01-01

This paper describes a longitudinal study of over 10 years of university pre-incubation in Wales, using case studies of incubated businesses to track their performance since 2001. Surviving "graduated" businesses were investigated and quantitative and qualitative data were gathered to profile the current status of these businesses and…

Triolein embedded cellulose acetate membrane as a tool to evaluate sequestration of PAHs in lake sediment core at large temporal scale.

PubMed

Tao, Yuqiang; Xue, Bin; Yao, Shuchun; Deng, Jiancai; Gui, Zhifan

2012-04-03

Although numerous studies have addressed sequestration of hydrophobic organic compounds (HOCs) in laboratory, little attention has been paid to its evaluation method in field at large temporal scale. A biomimetic tool, triolein embedded cellulose acetate membrane (TECAM), was therefore tested to evaluate sequestration of six PAHs with various hydrophobicity in a well-dated sediment core sampled from Nanyi Lake, China. Properties of sediment organic matter (OM) varying with aging time dominated the sequestration of PAHs in the sediment core. TECAM-sediment accumulation factors (MSAFs) of the PAHs declined with aging time, and significantly correlated with the corresponding biota-sediment accumulation factors (BSAFs) for gastropod (Bellamya aeruginosa) simultaneously incubated in the same sediment slices. Sequestration rates of the PAHs in the sediment core evaluated by TECAM were much lower than those obtained from laboratory study. The relationship between relative availability for TECAM (MSAF(t)/MSAF(0)) and aging time followed the first order exponential decay model. MSAF(t)/MSAF(0) was well-related to the minor changes of the properties of OM varying with aging time. Compared with chemical extraction, sequestration reflected by TECAM was much closer to that by B. aeruginosa. In contrast to B. aeruginosa, TECAM could avoid metabolism and the influences from feeding and other behaviors of organisms, and it is much easier to deploy and ready in laboratory. Hence TECAM provides an effective and convenient way to study sequestration of PAHs and probably other HOCs in field at large temporal scale.

Evaluation of aquatic sediment microcosms and their use in assessing possible effects of introduced microorganisms on ecosystem parameters.

PubMed Central

Wagner-Döbler, I; Pipke, R; Timmis, K N; Dwyer, D F

1992-01-01

In this paper we describe a sediment microcosm system consisting of 20 undisturbed, layered sediment cores with overlying site water which are incubated under identical conditions of temperature, light, stirring rate of overlying water, and water exchange rate. Ecosystem parameters (nutrient level, photosynthetic potential, community structure of heterotrophic bacteria, thymidine incorporation rate, and oxygen microgradients) of the laboratory microcosms and the source ecosystem were compared and shown to be indistinguishable for the first 2 weeks. In weeks 3 and 4, small differences were detectable in the nutrient level, community structure of heterotrophic bacteria, and thymidine incorporation rate. However, the photosynthetic potential, depth profiles of heterotrophic bacterial community structure, and oxygen microgradients were maintained throughout the incubation period and did not differ between laboratory microcosms and the source ecosystem. The microcosm system described here would thus appear to be a valid model of aquatic sediments for up to 4 weeks; the actual period would depend on the sediment source and incubation temperature. The validated systems were used with Rhine river sediment to assess possible effects on ecosystem parameters of Pseudomonas sp. strain B13 FR1(pFRC20P), a genetically engineered microorganism (GEM) that had been constructed to degrade mixtures of halo- and alkylbenzoates and -phenols. The GEM survived in the surface sediment at densities of 5 x 10(4) to 5 x 10(5)/g (dry weight) for 4 weeks and degraded added chloro- and methylaromatics. The GEM did not measurably influence ecosystem parameters such as photosynthesis, densities of selected heterotrophic bacteria, thymidine incorporation rate, and oxygen microgradients. Thus, the microcosm system described here would seem to be useful for the study of the ecology of biodegradation and the fate and effect of microorganisms introduced into the environment. PMID:1599244

Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: Integrating hydrologic and biological processes using sediment perfusion cores

USGS Publications Warehouse

Sheibley, R.W.; Duff, J.H.; Jackman, A.P.; Triska, F.J.

2003-01-01

Inorganic N transformations were examined in streambed sediments from the Shingobee River using sediment perfusion cores. The experimental design simulated groundwater-stream water mixing within sediment cores, which provided a well-defined one-dimensional representation of in situ hydrologic conditions. Two distinct hydrologic and chemical settings were preserved in the sediment cores: the lowermost sediments, perfused with groundwater, remained anaerobic during the incubations, whereas the uppermost sediments, perfused with oxic water pumped from the overlying water column, simulated stream water penetration into the bed. The maintenance of oxic and anoxic zones formed a biologically active aerobic-anaerobic interface. Ammonium (NH4+) dissolved in groundwater was transported conservatively through the lower core zone but was removed as it mixed with aerated recycle water. Concurrently, a small quantity of nitrate (NO3-) equaling ???25% of the NH4+ loss was produced in the upper sediments. The NH4+ and NO3- profiles in the uppermost sediments resulted from coupled nitrification-denitrification, because assimilation and sorption were negligible. We hypothesize that anaerobic microsites within the aerated upper sediments supported denitrification. Rates of nitrification and denitrification in the perfusion cores ranged 42-209 and 53-160 mg N m-2 day-1, respectively. The use of modified perfusion cores permitted the identification and quantification of N transformations and verified process control by surface water exchange into the shallow hyporheic zone of the Shingobee River.

Microbial responses to polycyclic aromatic hydrocarbon contamination in temporary river sediments: Experimental insights.

PubMed

Zoppini, Annamaria; Ademollo, Nicoletta; Amalfitano, Stefano; Capri, Silvio; Casella, Patrizia; Fazi, Stefano; Marxsen, Juergen; Patrolecco, Luisa

2016-01-15

Temporary rivers are characterized by dry-wet phases and represent an important water resource in semi-arid regions worldwide. The fate and effect of contaminants have not been firmly established in temporary rivers such as in other aquatic environments. In this study, we assessed the effects of sediment amendment with Polycyclic Aromatic Hydrocarbons (PAHs) on benthic microbial communities. Experimental microcosms containing natural (Control) and amended sediments (2 and 20 mg PAHs kg(-1) were incubated for 28 days. The PAH concentrations in sediments were monitored weekly together with microbial community structural (biomass and phylogenetic composition by TGGE and CARD-FISH) and functional parameters (ATP concentration, community respiration rate, bacterial carbon production rate, extracellular enzyme activities). The concentration of the PAH isomers did not change significantly with the exception of phenanthrene. No changes were observed in the TGGE profiles, whereas the occurrence of Alpha- and Beta-Proteobacteria was significantly affected by the treatments. In the amended sediments, the rates of carbon production were stimulated together with aminopeptidase enzyme activity. The community respiration rates showed values significantly lower than the Control after 1 day from the amendment then recovering the Control values during the incubation. A negative trend between the respiration rates and ATP concentration was observed only in the amended sediments. This result indicates a potential toxic effect on the oxidative phosphorylation processes. The impoverishment of the energetic resources that follows the PAH impact may act as a domino on the flux of energy from prokaryotes to the upper level of the trophic chain, with the potential to alter the temporary river functioning.

Double wall versus single wall incubator for reducing heat loss in very low birth weight infants in incubators.

PubMed

Laroia, N; Phelps, D L; Roy, J

2007-04-18

Studies have shown improved survival of newborn infants maintained in the thermoneutral range. The concept of an incubator with additional insulation, a double plexiglass wall, is appealing for very low birth weight infants as it may help to provide a thermoneutral environment. To assess the effects of double walled incubator versus a single wall incubator on insensible water loss, rate of oxygen consumption, episodes of hypothermia, time to regain birth weight, duration of hospitalization and infant mortality in premature infants. The standard search strategy of the Cochrane Neonatal Review Group was used. This included searches of electronic databases: Oxford Database of Perinatal Trials, Cochrane Central Register of Controlled Trials (CENTRAL, The Cochrane Library, Issue 1, 2006), MEDLINE (1966 - 2006), EMBASE, previous reviews including cross references, abstracts, conference and symposia proceedings, expert informants in all published languages, and CINAHL (1982 - 2006). Only studies using random or quasi-random methods of allocation were considered for this review. Eligible studies assessed at least one of the outcome variables identified as important to this topic. Independent data extraction and quality assessment of included trials was conducted by the review authors. Data were analyzed using generic inverse variance methodology and weighted mean difference (WMD). Results are presented with 95% confidence intervals. Meta-analysis was undertaken using a fixed effect model. Three studies met the criteria. Four other studies were excluded, as they did not compare double versus single wall incubators (details of the studies are given in the included and excluded studies section). Double wall incubators have the advantage of decreasing heat loss, decreasing heat production and decreasing radiant heat loss when compared to single wall incubators. There is also the advantage of reduced oxygen consumption. A minimal increase in conductive heat loss was noted when

Improved measurement of extracellular enzymatic activities in subsurface sediments using competitive desorption treatment

NASA Astrophysics Data System (ADS)

Hoarfrost, Adrienne; Snider, Rachel; Arnosti, Carol

2017-02-01

Extracellular enzymatic activities initiate microbially-driven heterotrophic carbon cycling in subsurface sediments. While measurement of hydrolytic activities in sediments is fundamental to our understanding of carbon cycling, these measurements are often technically difficult due to sorption of organic substrates to the sediment matrix. Most methods that measure hydrolysis of organic substrates in sediments rely on recovery of a fluorophore or fluorescently-labeled target substrate from a sediment incubation. The tendency for substrates to sorb to sediments results in lower recovery of an added substrate, and can result in data that are unusable or difficult to interpret. We developed a treatment using competitive desorption of a fluorescently-labeled, high molecular weight organic substrate that improves recovery of the labeled substrate from sediment subsamples. Competitive desorption treatment improved recovery of the fluorescent substrate by a median of 66%, expanded the range of sediments for which activity measurements could be made, and was effective in sediments from a broad range of geochemical contexts. More reliable measurements of hydrolytic activities in sediments will yield usable and more easily interpretable data from a wider range of sedimentary environments, enabling better understanding of microbially-catalyzed carbon cycling in subsurface environments.

Business Incubator Development in Rural Areas.

ERIC Educational Resources Information Center

Weinberg, Mark

One viable economic development option for rural areas is the creation of business incubators--facilities that aid in the early stages of growth of an enterprise by providing rental space, services, and business assistance. Business incubators promote community development by diversifying the economic base, enhancing the community's image as a…

Sediment-water gas exchange in two Swedish lakes measured by Eddy Correlation

NASA Astrophysics Data System (ADS)

Kokic, J.; Sahlee, E.; Brand, A.; Sobek, S.

2014-12-01

Lake sediments are hotspots for carbon (C) cycling, acting both as sinks and sources through C burial and production of carbon dioxide (CO2) and methane. The fate of this CO2 in the water column is controlled by bottom water turbulence, a factor not accounted for in current estimates of sediment CO2 fluxes. This study is aimed to quantify the turbulent CO2 flux across the sediment-water interface (SWI) by measuring the oxygen (O2) flux with the non-invasive Eddy Correlation (EC) method that combines measurements of 3D velocity (ADV) and O2 fluctuations with a microsensor. Using the metabolic relation (respiratory quotient, RQ) of O2 and CO2 derived from a sediment incubation experiment we present the first estimates of turbulent lake sediment CO2 flux from two boreal lakes in Sweden (Erssjön and Erken, 0.07 km2 and 23.7 km2 respectively). Only ~10 % of the total dataset was extracted for flux calculations due to poor signal-to-noise ratio in the velocity and O2 signals. The sediment in Lake Erssjön was both consuming and producing O2, related to bacterial respiration and photosynthesis. Mean O2 flux was -0.19 and 0.17 μmol O2 m-2 sec-1, comparing to 0.04 μmol O2 m-2 sec-1 derived from the sediment incubation experiment. Fluxes for Lake Erken are still to be determined. Experimentally derived RQ of the both lake sediments were close to unity implying that in-situ CO2 fluxes are of similar magnitude as O2 fluxes, varying between -0.15 and 0.18 μmol C m-2 sec-1. The first measurement of turbulent sediment O2 flux and estimate of turbulent CO2 flux from a small boreal lake show higher and more variable fluxes than previously found in experimental studies. The low amount of data extracted for flux calculations (~10%) point towards the difficulties in EC measurement in low-turbulence environments. On-going work focuses on the turbulence structure in lakes and its influence on the gas fluxes at the SWI.

'Green incubation': avian offspring benefit from aromatic nest herbs through improved parental incubation behaviour.

PubMed

Gwinner, Helga; Capilla-Lasheras, Pablo; Cooper, Caren; Helm, Barbara

2018-06-13

Development of avian embryos requires thermal energy, usually from parents. Parents may, however, trade off catering for embryonic requirements against their own need to forage through intermittent incubation. This dynamically adjusted behaviour can be affected by properties of the nest. Here, we experimentally show a novel mechanism by which parents, through incorporation of aromatic herbs into nests, effectively modify their incubation behaviour to the benefit of their offspring. Our study species, the European starling, includes in its nest aromatic herbs which promote offspring fitness. We provided wild starlings with artificial nests including or excluding the typically selected fresh herbs and found strong support for our prediction of facilitated incubation. Herb effects were not explained by thermal changes of the nests per se , but by modified parental behaviours. Egg temperatures and nest attendance were higher in herb than herbless nests, egg temperatures dropped less frequently below critical thresholds and parents started their active day earlier. These effects were dynamic over time and particularly strong during early incubation. Incubation period was shorter in herb nests, and nestlings were heavier one week after hatching. Aromatic herbs hence influenced incubation in beneficial ways for offspring, possibly through pharmacological effects on incubating parents. © 2018 The Author(s).

Nitrogen removal through N cycling from sediments in a constructed coastal marsh as assessed by 15N-isotope dilution.

PubMed

Ro, Hee-Myong; Kim, Pan-Gun; Park, Ji-Suk; Yun, Seok-In; Han, Junho

2018-04-01

Constructed coastal marsh regulates land-born nitrogen (N) loadings through salinity-dependent microbial N transformation processes. A hypothesis that salinity predominantly controls N removal in marsh was tested through incubation in a closed system with added- 15 NH 4 + using sediments collected from five sub-marshes in Shihwa marsh, Korea. Time-course patterns of concentrations and 15 N-atom% of soil-N pools were analyzed. Sediments having higher salinity and lower soil organic-C and acid-extractable organic-N exhibited slower rates of N mineralization and immobilization, nitrification, and denitrification. Rates of denitrification were not predicted well by sediment salinity but by its organic-C, indicating heterotrophic denitrification. Denitrification dominated N-loss from this marsh, and nitrogen removal capacity of this marsh was estimated at 337 kg N day -1 (9.9% of the daily N-loadings) considering the current rooting depth of common reeds (1.0 m). We showed that sediment N removal decreases with increasing salinity and can increase with increasing organic-C for heterotrophic denitrification. Copyright © 2018 Elsevier Ltd. All rights reserved.

Impact of volcanic ash on anammox communities in deep sea sediments.

PubMed

Song, Bongkeun; Buckner, Caroline T; Hembury, Deborah J; Mills, Rachel A; Palmer, Martin R

2014-04-01

Subaerial explosive volcanism contributes substantial amounts of material to the oceans, but little is known about the impact of volcanic ash on sedimentary microbial activity. We have studied anammox communities in deep sea sediments near the volcanically active island of Montserrat, Lesser Antilles. The rates of anammox and denitrification in the sediments were measured using (15)N isotope pairing incubation experiments, while 16S rRNA genes were used to examine anammox community structures. The higher anammox rates were measured in sediment containing the lower accumulation of volcanic ash in the surface sediments, while the lowest activities were found in sediments with the highest ash deposit. 16S rRNA gene analysis revealed the presence of 'Candidatus Scalindua spp.' in the sediments. The lowest diversity of anammox bacteria was observed in the sediments with the highest ash deposit. Overall, this study demonstrates that the deposition of volcanic material in deep sea sediments has negative impacts on activity and diversity of the anammox community. Since anammox may account for up to 79% of N2 production in marine ecosystems, periods of extensive explosive volcanism in Earth history may have had a hitherto unrecognized negative impact on the sedimentary nitrogen removal processes. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Short-chain alkane cycling in deep Gulf of Mexico cold-seep sediments

NASA Astrophysics Data System (ADS)

Sibert, R.; Joye, S. B.; Hunter, K.

2015-12-01

Mixtures of light hydrocarbon gases are common in deep Gulf of Mexico cold-seep sediments, and are typically dissolved in pore fluids, adsorbed to sediment particles, trapped in methane ice, or as free gas. The dominant component in these natural gas mixtures is usually methane (>80% C1), but ethane (C2) and propane (C3) are nearly always present in trace amounts (<1% total). The processes that control the concentration and isotopic signature of these gases in sediments are well explained for methane, but the controls for C2/C3 cycling are still a relative mystery. Methane production proceeds in deep anoxic sediments by either 1) thermocatalytic cracking of fossil organic matter, or 2) as a direct product of microbial metabolism, i.e. methanogenesis. In surface sediments, it appears that both microbial consumption and chemical deposition of methane (i.e. as methane clathrate) ensures that >95% of the methane produced at depth never reaches the water column. Production of C1 and C2 in deep-sea sediments has been historically attributed only to thermocatalytic processes, though limited data suggests production of C2/C3 compounds through the activity of archaea at depth. Furthermore, carbon isotopic data on ethane and propane from deep cores of Gulf of Mexico sediments suggest alkanogenesis at >3 m depth in the sediment column and alkane oxidation in uppermost oxidant-rich sediments. Additional studies have also isolated microorganisms capable of oxidizing ethane and propane in the laboratory, but field studies of microbial-driven dynamics of C2/C3 gases in cold-seep sediments are rare. Here, we present the results of a series of incubation experiments using sediment slurries culled from surface sediments from one of the most prolific natural oil and gas seeps in the Gulf of Mexico. Rates of alkane oxidation were measured under a variety of conditions to assess the surface-driven microbial controls on C2/C3 cycling in cold-seep environments. Such microbial processes

Accuracy of egg flotation throughout incubation to determine embryo age and incubation day in waterbird nests

USGS Publications Warehouse

Ackerman, Joshua T.; Eagles-Smith, Collin A.

2010-01-01

Floating bird eggs to estimate their age is a widely used technique, but few studies have examined its accuracy throughout incubation. We assessed egg flotation for estimating hatch date, day of incubation, and the embryo's developmental age in eggs of the American Avocet (Recurvirostra americana), Black-necked Stilt (Himantopus mexicanus), and Forster's Tern (Sterna forsteri). Predicted hatch dates based on egg flotation during our first visit to a nest were highly correlated with actual hatch dates (r = 0.99) and accurate within 2.3 ± 1.7 (SD) days. Age estimates based on flotation were correlated with both day of incubation (r = 0.96) and the embryo's developmental age (r = 0.86) and accurate within 1.3 ± 1.6 days and 1.9 ± 1.6 days, respectively. However, the technique's accuracy varied substantially throughout incubation. Flotation overestimated the embryo's developmental age between 3 and 9 days, underestimated age between 12 and 21 days, and was most accurate between 0 and 3 days and 9 and 12 days. Age estimates based on egg flotation were generally accurate within 3 days until day 15 but later in incubation were biased progressively lower. Egg flotation was inaccurate and overestimated embryo age in abandoned nests (mean error: 7.5 ± 6.0 days). The embryo's developmental age and day of incubation were highly correlated (r = 0.94), differed by 2.1 ± 1.6 days, and resulted in similar assessments of the egg-flotation technique. Floating every egg in the clutch and refloating eggs at subsequent visits to a nest can refine age estimates.

Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

NASA Technical Reports Server (NTRS)

Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

2001-01-01

Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended

A System for Incubations at High Gas Partial Pressure

PubMed Central

Sauer, Patrick; Glombitza, Clemens; Kallmeyer, Jens

2012-01-01

High-pressure is a key feature of deep subsurface environments. High partial pressure of dissolved gasses plays an important role in microbial metabolism, because thermodynamic feasibility of many reactions depends on the concentration of reactants. For gases, this is controlled by their partial pressure, which can exceed 1 MPa at in situ conditions. Therefore, high hydrostatic pressure alone is not sufficient to recreate true deep subsurface in situ conditions, but the partial pressure of dissolved gasses has to be controlled as well. We developed an incubation system that allows for incubations at hydrostatic pressure up to 60 MPa, temperatures up to 120°C, and at high gas partial pressure. The composition and partial pressure of gasses can be manipulated during the experiment. To keep costs low, the system is mainly made from off-the-shelf components with only very few custom-made parts. A flexible and inert PVDF (polyvinylidene fluoride) incubator sleeve, which is almost impermeable for gases, holds the sample and separates it from the pressure fluid. The flexibility of the incubator sleeve allows for sub-sampling of the medium without loss of pressure. Experiments can be run in both static and flow-through mode. The incubation system described here is usable for versatile purposes, not only the incubation of microorganisms and determination of growth rates, but also for chemical degradation or extraction experiments under high gas saturation, e.g., fluid–gas–rock-interactions in relation to carbon dioxide sequestration. As an application of the system we extracted organic compounds from sub-bituminous coal using H2O as well as a H2O–CO2 mixture at elevated temperature (90°C) and pressure (5 MPa). Subsamples were taken at different time points during the incubation and analyzed by ion chromatography. Furthermore we demonstrated the applicability of the system for studies of microbial activity, using samples from the Isis mud volcano. We could

Ammonium sorption to channel and riparian sediments: A transient storage pool for dissolved inorganic nitrogen

USGS Publications Warehouse

Triska, Frank J.; Jackman, Alan P.; Duff, John H.; Avanzino, Ronald J.

1994-01-01

Sediment (0.5 mm–2.0 mm grain size) was incubated in nylon bags (200 μm mesh) below the water table in the channel and in two transects of shallow wells perpendicular to the banks (to 18 m) of a third-order stream during August, 1987. One transect of wells drained steep old-growth forest, and the other a steep 23 year-old clear-cut partially regenerated in alder. At approximately 6-week intervals between October, 1987, and June, 1988, bags were retrieved. Total exchangeable ammonium was determined on sediment, and dissolved oxygen, nitrate and ammonium were determined in stream and well water. Exchangeable ammonium ranged from 10 μeq/100 g of sediment in the stream where nitrification potential and subsurface exchange with stream water were high, to 115 μeq/100 g sediment 18 m inland where channel water-groundwater mixing and nitrification potential were both low. Sorbed ammonium was highest during summer/autumn base flow and lowest during winter storm flow. Both channel and well water contained measurable dissolved oxygen at all times. Ammonium concentration was typically < 10 μg-N/L in channel water, increased with distance inland, but did not exceed 365 μg-N/L at any site. Nitrate concentration was typically higher in well water than channel water. Nitrate levels increased dramatically in wells at the base of the clear-cut following the onset of autumn rains. The results indicate a potential for temporary storage of ammonium on riparian sediments which may influence biotic nitrogen cycling, and alter the timing and form of dissolved inorganic nitrogen transport from the watershed.

Decomposition of algal lipids in clay-enriched marine sediment under oxic and anoxic conditions

NASA Astrophysics Data System (ADS)

Lü, Dongwei; Song, Qian; Wang, Xuchen

2010-01-01

A series of laboratory incubation experiments were conducted to examine the decomposition of algal organic matter in clay-enriched marine sediment under oxic and anoxic conditions. During the 245-day incubation period, changes in the concentrations of TOC, major algal fatty acid components (14:0, 16:0, 16:1, 18:1 and 20:5), and n-alkanes (C16-C23) were quantified in the samples. Our results indicate that the organic matters were degraded more rapidly in oxic than anoxic conditions. Adsorption of fatty acids onto clay minerals was a rapid and reversible process. Using a simple G model, we calculated the decomposition rate constants for TOC, n-alkanes and fatty acids which ranged from 0.017-0.024 d-1, 0.049-0.103 d-1 and 0.011 to 0.069 d-1, respectively. Algal organic matter degraded in two stages characterized by a fast and a slow degradation processes. The addition of clay minerals montmorillonite and kaolinite to the sediments showed significant influence affecting the decomposition processes of algal TOC and fatty acids by adsorption and incorporation of the compounds with clay particles. Adsorption/association of fatty acids by clay minerals was rapid but appeared to be a slow reversible process. In addition to the sediment redox and clay influence, the structure of the compounds also played important roles in affecting their degradation dynamic in sediments.

Microbial ecology of arsenic-mobilizing Cambodian sediments: lithological controls uncovered by stable-isotope probing.

PubMed

Héry, Marina; Rizoulis, Athanasios; Sanguin, Hervé; Cooke, David A; Pancost, Richard D; Polya, David A; Lloyd, Jonathan R

2015-06-01

Microbially mediated arsenic release from Holocene and Pleistocene Cambodian aquifer sediments was investigated using microcosm experiments and substrate amendments. In the Holocene sediment, the metabolically active bacteria, including arsenate-respiring bacteria, were determined by DNA stable-isotope probing. After incubation with (13) C-acetate and (13) C-lactate, active bacterial community in the Holocene sediment was dominated by different Geobacter spp.-related 16S rRNA sequences. Substrate addition also resulted in the enrichment of sequences related to the arsenate-respiring Sulfurospirillum spp. (13) C-acetate selected for ArrA related to Geobacter spp. whereas (13) C-lactate selected for ArrA which were not closely related to any cultivated organism. Incubation of the Pleistocene sediment with lactate favoured a 16S rRNA-phylotype related to the sulphate-reducing Desulfovibrio oxamicus DSM1925, whereas the ArrA sequences clustered with environmental sequences distinct from those identified in the Holocene sediment. Whereas limited As(III) release was observed in Pleistocene sediment after lactate addition, no arsenic mobilization occurred from Holocene sediments, probably because of the initial reduced state of As, as determined by X-ray Absorption Near Edge Structure. Our findings demonstrate that in the presence of reactive organic carbon, As(III) mobilization can occur in Pleistocene sediments, having implications for future strategies that aim to reduce arsenic contamination in drinking waters by using aquifers containing Pleistocene sediments. © 2014 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism.

PubMed

Rowe, Annette R; Chellamuthu, Prithiviraj; Lam, Bonita; Okamoto, Akihiro; Nealson, Kenneth H

2014-01-01

Little is known about the importance and/or mechanisms of biological mineral oxidation in sediments, partially due to the difficulties associated with culturing mineral-oxidizing microbes. We demonstrate that electrochemical enrichment is a feasible approach for isolation of microbes capable of gaining electrons from insoluble minerals. To this end we constructed sediment microcosms and incubated electrodes at various controlled redox potentials. Negative current production was observed in incubations and increased as redox potential decreased (tested -50 to -400 mV vs. Ag/AgCl). Electrode-associated biomass responded to the addition of nitrate and ferric iron as terminal electron acceptors in secondary sediment-free enrichments. Elemental sulfur, elemental iron and amorphous iron sulfide enrichments derived from electrode biomass demonstrated products indicative of sulfur or iron oxidation. The microbes isolated from these enrichments belong to the genera Halomonas, Idiomarina, Marinobacter, and Pseudomonas of the Gammaproteobacteria, and Thalassospira and Thioclava from the Alphaproteobacteria. Chronoamperometry data demonstrates sustained electrode oxidation from these isolates in the absence of alternate electron sources. Cyclic voltammetry demonstrated the variability in dominant electron transfer modes or interactions with electrodes (i.e., biofilm, planktonic or mediator facilitated) and the wide range of midpoint potentials observed for each microbe (from 8 to -295 mV vs. Ag/AgCl). The diversity of extracellular electron transfer mechanisms observed in one sediment and one redox condition, illustrates the potential importance and abundance of these interactions. This approach has promise for increasing our understanding the extent and diversity of microbe mineral interactions, as well as increasing the repository of microbes available for electrochemical applications.

Sediment and Nutrient Sources as well as Interspecific Competition Control Growth of 2 Common Species of Coral Reef Macroalgae

NASA Astrophysics Data System (ADS)

Moore, T.; Fong, P.; Cuker, B.

2016-02-01

Aquatic communities worldwide are increasingly subjected to multiple anthropogenic stressors that often result in shifts in structure and function. On coral reefs, human impacts have been associated with phase-shifts from coral to algal domination. We hypothesized that the proliferation of these algal communities, especially on fringing reefs, may be facilitated by human alterations in nutrient enrichment and input of sediments from developed watersheds, which may also influence competitive outcomes among dominant algal species. To evaluate how changes in these abiotic stressors as well as competition may affect the growth of 2 common species of calcifying coral reef algae, Galaxaura fasciculata and Padina boryana, we conducted 3 separate 2 factor mesocosm experiments modeling fringing reefs in Moorea, French Polynesia. In the first experiment, we varied sediment source (marine vs. terrestrial) and water column nutrients (ambient vs. enriched) for each species separately and measured growth after 7 days. While both algae grew faster in enriched compared to ambient nutrients, P. boryana performed best with marine sediment (+27% change in biomass) and G. fasciculata with terrestrial sediment (+14% change in biomass). Next, we varied sediment source (as above) as well as sediment nutrients (ambient/enriched) for each species. While P. boryana lost 44% biomass in the eutrophic terrestrial sediment treatment, G. fasciculata performed the best and gained 19% biomass. Finally, we varied competition (alone/together) and terrestrial sediment nutrients (ambient/enriched). Over the 7 day period, P. boryana lost 64% biomass when in competition with G. fasciculata in the enriched treatment while G. fasciculata gained 38% biomass when in competition with P. boryana in the ambient treatment. These results indicate that, while growth of both species of macroalgae was regulated by nutrients, sediments, and competition, each responded uniquely to these controlling factors.

Incubation temperature and hemoglobin dielectric of chicken embryos incubated under the influence of electric field.

PubMed

Shafey, T M; Al-Batshan, H A; Shalaby, M I; Ghannam, M M

2006-01-01

Eggs from a layer-type breeder flock (Baladi, King Saud University) between 61 and 63 weeks of age were used in 3 trials to study the effects of electric field (EF) during incubation on the internal temperature of incubation, and eggs and hemoglobin (Hb) dielectric of chicken embryos at 18 days of age. Dielectric relative permittivity (epsilon') and conductivity (sigma) of Hb were examined in the range of frequency from 20 to 100 kHz. The values of dielectric increment (Deltaepsilon') and the relaxation times (tau) of Hb molecules were calculated. The internal temperature of eggs was measured in empty (following the removal of egg contents) and fertilized eggs in trials 1 and 2, respectively. The level of the EF was 30 kV/m, 60 Hz. EF incubation of embryos influenced the temperature of incubation and electrical properties of Hb molecules and did not influence the temperature of incubation and internal environment of eggs when empty eggs were incubated. EF incubation of fertilized eggs significantly raised the temperature of incubation, egg air cell, and at the surface of the egg yolk by approximately 0.09, 0.60, and 0.61 degrees F, respectively and Hb epsilon', sigma, Deltaepsilon', and tau as a function of the range of frequency of 20 to 100 kHz when compared with their counterparts of the control group. It was concluded that the exposure of fertilized chicken eggs to EF of 30 kV/m, 60 Hz, during incubation altered dielectric properties of Hb and that probably affected cell to cell communication and created the right environment for enhancing the growing process and heat production of embryos consequently increasing the temperature of the internal environment of the egg, and incubation.

Distribution of atrazine and its phytoremediation by submerged macrophytes in lake sediments.

PubMed

Qu, Mengjie; Li, Huidong; Li, Na; Liu, Guanglong; Zhao, Jianwei; Hua, Yumei; Zhu, Duanwei

2017-02-01

We investigated sediments with high atrazine accumulation capability from 6 eutrophic lakes in Hubei Province of central China. Almost all lakes have atrazine in their sediments because of human activities. Honghu Lake and Liangzihu Lake were found to have higher levels of atrazine in sediment: 0.171 and 0.114 mg kg -1 , respectively. The results showed that lake sediments could adsorb atrazine six times faster than soils. The equilibrium partition coefficient of atrazine desorption (K Pd ) is much larger than the adsorption equilibrium partition coefficient (K Pa ) of atrazine, indicating that the residue of atrazine in water is easily immobilized by the sediments. Meanwhile, the incubation experiment showed that the removal rateof atrazine in Potamogeton crispus-planted and Myriophyllum spicatum-planted sediments reached >90%, while the rate in unplanted sediments was 77.2 ± 2.12% over 45 d. In unplanted sediment, the half-life of atrazine dissipation was 14.30 d, which was strongly enhanced by P. crispus and M. spicatum, greatly reducing the half-life to 8.60 and 9.72 d, respectively. These two submerged macrophytes are considered to be potential tools in the remediation of atrazine-contaminated sediments. Copyright © 2016 Elsevier Ltd. All rights reserved.

Amending soils with sediment material from constructed wetlands increases phosphorus sorption

NASA Astrophysics Data System (ADS)

Laakso, Johanna; Uusitalo, Risto; Leppänen, Janette; Yli-Halla, Markku

2017-04-01

Sediment of agricultural constructed wetlands (CWs) is comprised of matter eroded from surrounding fields. This material is rich in aluminium (Al) and iron (Fe) (hydr)oxides that have a high affinity for phosphorus (P). Sediment material returned to fields could therefore affect soil P retention characteristics. We incubated a clay soil with a high soil test P (STP, 24 mg PAc l-1; extracted with pH 4.65 ammonium acetate buffer) and a sandy loam with excessive STP (210 mg PAc l-1) for three weeks with increasing amounts of CW sediment: 0, 2, 5, 10 and 50% of the sample volume. After incubation, the soil-sediment mixtures were studied with the quantity/intensity (Q/I) technique, using chemical extractions and by exposing the mixtures to simulated rainfall. Sorption affinity for P regularly increased with increasing the sediment share of the mixtures, the 0% sediment content having the lowest and 50% sediment content the highest P sorption. With 0% sediment application, the value of equilibrium P concentration (EPC0) determined by Q/I technique, was 0.69 and 44.3 mg l-1 for clay soil and sandy loam, respectively. With 2-5% sediment amendment, the EPC0 decreased 13-36% for clay soil and 13-54% for sandy loam. The 50% sediment mixtures had EPC0 of 0.05 mg l-1 for both soils. At a practically feasible sediment addition rate of 5%, dissolved reactive P (DRP) in percolating water from simulated rainfall decreased by 55% in the clay soil and 54% in sandy loam (p<0.001 in both cases). Particulate-P (PP) also showed a decreasing trend with increasing sediment addition rate. Upon prolonged simulated rainfall, the decreasing effect of sediment on DRP and PP declined somewhat. The effects of sediment addition can be attributed partly to increased salt concentrations in the sediment, which have a short-term effect on P mobilisation, but mostly to increased concentrations of Al and Fe (hydr)oxides, increasing long-term P sorption capacity. Amending the soils with sediment material

A microbial arsenic cycle in sediments of an acidic mine impoundment: Herman Pit, Clear Lake, California

USGS Publications Warehouse

Blum, Jodi S.; McCann, Shelley; Bennett, S.; Miller, Laurence G.; Stolz, J. R.; Stoneburner, B.; Saltikov, C.; Oremland, Ronald S.

2015-01-01

The involvement of prokaryotes in the redox reactions of arsenic occurring between its +5 [arsenate; As(V)] and +3 [arsenite; As(III)] oxidation states has been well established. Most research to date has focused upon circum-neutral pH environments (e.g., freshwater or estuarine sediments) or arsenic-rich “extreme” environments like hot springs and soda lakes. In contrast, relatively little work has been conducted in acidic environments. With this in mind we conducted experiments with sediments taken from the Herman Pit, an acid mine drainage impoundment of a former mercury (cinnabar) mine. Due to the large adsorptive capacity of the abundant Fe(III)-rich minerals, we were unable to initially detect in solution either As(V) or As(III) added to the aqueous phase of live sediment slurries or autoclaved controls, although the former consumed added electron donors (i.e., lactate, acetate, hydrogen), while the latter did not. This prompted us to conduct further experiments with diluted slurries using the live materials from the first incubation as inoculum. In these experiments we observed reduction of As(V) to As(III) under anoxic conditions and reduction rates were enhanced by addition of electron donors. We also observed oxidation of As(III) to As(V) in oxic slurries as well as in anoxic slurries amended with nitrate. We noted an acid-tolerant trend for sediment slurries in the cases of As(III) oxidation (aerobic and anaerobic) as well as for anaerobic As(V) reduction. These observations indicate the presence of a viable microbial arsenic redox cycle in the sediments of this extreme environment, a result reinforced by the successful amplification of arsenic functional genes (aioA, and arrA) from these materials.

Microbial colonization and degradation of polyethylene and biodegradable plastic bags in temperate fine-grained organic-rich marine sediments.

PubMed

Nauendorf, Alice; Krause, Stefan; Bigalke, Nikolaus K; Gorb, Elena V; Gorb, Stanislav N; Haeckel, Matthias; Wahl, Martin; Treude, Tina

2016-02-15

To date, the longevity of plastic litter at the sea floor is poorly constrained. The present study compares colonization and biodegradation of plastic bags by aerobic and anaerobic benthic microbes in temperate fine-grained organic-rich marine sediments. Samples of polyethylene and biodegradable plastic carrier bags were incubated in natural oxic and anoxic sediments from Eckernförde Bay (Western Baltic Sea) for 98 days. Analyses included (1) microbial colonization rates on the bags, (2) examination of the surface structure, wettability, and chemistry, and (3) mass loss of the samples during incubation. On average, biodegradable plastic bags were colonized five times higher by aerobic and eight times higher by anaerobic microbes than polyethylene bags. Both types of bags showed no sign of biodegradation during this study. Therefore, marine sediment in temperate coastal zones may represent a long-term sink for plastic litter and also supposedly compostable material. Copyright © 2016 Elsevier Ltd. All rights reserved.

Iron-mediated anaerobic oxidation of methane in brackish coastal sediments.

PubMed

Egger, Matthias; Rasigraf, Olivia; Sapart, Célia J; Jilbert, Tom; Jetten, Mike S M; Röckmann, Thomas; van der Veen, Carina; Bândă, Narcisa; Kartal, Boran; Ettwig, Katharina F; Slomp, Caroline P

2015-01-06

Methane is a powerful greenhouse gas and its biological conversion in marine sediments, largely controlled by anaerobic oxidation of methane (AOM), is a crucial part of the global carbon cycle. However, little is known about the role of iron oxides as an oxidant for AOM. Here we provide the first field evidence for iron-dependent AOM in brackish coastal surface sediments and show that methane produced in Bothnian Sea sediments is oxidized in distinct zones of iron- and sulfate-dependent AOM. At our study site, anthropogenic eutrophication over recent decades has led to an upward migration of the sulfate/methane transition zone in the sediment. Abundant iron oxides and high dissolved ferrous iron indicate iron reduction in the methanogenic sediments below the newly established sulfate/methane transition. Laboratory incubation studies of these sediments strongly suggest that the in situ microbial community is capable of linking methane oxidation to iron oxide reduction. Eutrophication of coastal environments may therefore create geochemical conditions favorable for iron-mediated AOM and thus increase the relevance of iron-dependent methane oxidation in the future. Besides its role in mitigating methane emissions, iron-dependent AOM strongly impacts sedimentary iron cycling and related biogeochemical processes through the reduction of large quantities of iron oxides.

Evaluation of laboratory-scale in situ capping sediments with purple parent rock to control the eutrophication.

PubMed

Huang, Xuejiao; Shi, Wenhao; Ni, Jiupai; Li, Zhenlun

2017-03-01

In this study, the effectiveness of controlling the eutrophication using purple parent rock to cap the sediments was evaluated in the laboratory scale. Sediments were collected from Sanxikou reservoir (China) in July 2013. Then, three types of purple parent rock (T 1 f, J 3 p, and J 2 s) which are distributed widely in southwest China were used to cap the sediments. Limestone and calcite were used as the contrast group, because they had been reported as effective controls on eutrophication. Then, they were incubated at 20 °C for 46 days. The results indicated that the application of purple parent rock as a barrier material can effectively inhibit the release of nutrient elements in sediments, and the inhibition rates of total nitrogen (TN), total phosphorus (TP), ammonium (NH 4 -N), and nitrate (NO 3 -N) were much better than that of limestone and calcite. Among the three types of purple parent rock, J 3 p exhibited the best inhibitory effect on the release of nitrogen in sediments, and the inhibition efficiency of TN, NH 4 -N, and NO 3 -N was 59.7, 77.6, and 45.1%, respectively. As for T 1 f, it exhibited the best inhibitory effect on the release of TP in sediments with the inhibition rate of 94.4%. Whereas all these capping materials showed weak inhibition on release of organic matter in sediments, and the inhibition efficiencies were less than 20%. Moreover, these treatments could also cause distinct changes in the microbial community in sediments and overlying water, and the contents of TN and TP in all capping materials increased. All results demonstrated that purple parent rock could inhibit the release of nutrient in sediments through mechanical interception, physical adsorption, and chemical absorption as well as changing the microbial activity in the covering layer, sediments, or overlying water.

Comparison of different incubation conditions for microbiological environmental monitoring.

PubMed

Gordon, Oliver; Berchtold, Manfred; Staerk, Alexandra; Roesti, David

2014-01-01

Environmental monitoring represents an integral part of the microbiological quality control system of a pharmaceutical manufacturing operation. However, guidance documents differ regarding recommendation of a procedure, particularly regarding incubation time, incubation temperature, or nutrient media. Because of these discrepancies, many manufacturers decide for a particular environmental monitoring sample incubation strategy and support this decision with validation data. Such validations are typically laboratory-based in vitro studies, meaning that these are based on comparing incubation conditions and nutrient media through use of cultured microorganisms. An informal survey of the results of these in vitro studies performed at Novartis or European manufacturing sites of different pharmaceutical companies highlighted that no consensus regarding the optimal incubation conditions for microbial recovery existed. To address this question differently, we collected a significant amount of samples directly from air, inanimate surfaces, and personnel in pharmaceutical production and packaging rooms during manufacturing operation (in situ study). Samples were incubated under different conditions suggested in regulatory guidelines, and recovery of total aerobic microorganisms as well as moulds was assessed. We found the highest recovery of total aerobic count from areas with personnel flow using a general microbiological growth medium incubated at 30-35 °C. The highest recovery of moulds was obtained with mycological medium incubated at 20-25 °C. Single-plate strategies (two-temperature incubation or an intermediate incubation temperature of 25-30 °C) also yielded reasonable recovery of total aerobic count and moulds. However, recovery of moulds was found to be highly inefficient at 30-35 °C compared to lower incubation temperatures. This deficiency could not be rectified by subsequent incubation at 20-25 °C. A laboratory-based in vitro study performed in parallel was

Stabilizing Effects of Bacterial Biofilms: EPS Penetration and Redistribution of Bed Stability Down the Sediment Profile

NASA Astrophysics Data System (ADS)

Chen, X. D.; Zhang, C. K.; Zhou, Z.; Gong, Z.; Zhou, J. J.; Tao, J. F.; Paterson, D. M.; Feng, Q.

2017-12-01

Biofilms, consisting of microorganisms and their secreted extracellular polymeric substances (EPSs), serve as "ecosystem engineers" stabilizing sedimentary environments. Natural sediment bed provides an excellent substratum for biofilm growth. The porous structure and rich nutrients allow the EPS matrix to spread deeper into the bed. A series of laboratory-controlled experiments were conducted to investigate sediment colonization of Bacillus subtilis and the penetration of EPS into the sediment bed with incubation time. In addition to EPS accumulation on the bed surface, EPS also penetrated downward. However, EPS distribution developed strong vertical heterogeneity with a much higher content in the surface layer than in the bottom layer. Scanning electron microscope images of vertical layers also displayed different micromorphological properties of sediment-EPS matrix. In addition, colloidal and bound EPSs exhibited distinctive distribution patterns. After the full incubation, the biosedimentary beds were eroded to test the variation of bed stability induced by biological effects. This research provides an important reference for the prediction of sediment transport and hence deepens the understanding of the biologically mediated sediment system and broadens the scope of the burgeoning research field of "biomorphodynamics."

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

PubMed

Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

2016-08-01

Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single-cell genomics, metagenomics and transcriptomics with (14)C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70-86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490-cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with (14)C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter, JTB255 and SSr clades) that made up >50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drives important parts of marine carbon and sulfur cycles.

Application of Dredged Materials and Steelmaking Slag as Basal Media to Restore and Create Seagrass Beds: Mesocosm and Core Incubation Experiments

NASA Astrophysics Data System (ADS)

Tsukasaki, A.; Suzumura, M.; Tsurushima, N.; Nakazato, T.; Huang, Y.; Tanimoto, T.; Yamada, N.; Nishijima, W.

2016-02-01

Seagrass beds stabilize bottom sediments, improve water quality and light conditions, enhance species diversity, and provide habitat complexity in coastal marine environments. Seagrass beds are now experiencing worldwide decline by rapid environmental changes. Possible options of seagrass bed restoration are civil engineering works including mounding to raise the bottom to elevations with suitable light for seagrass growth. Reuse or recycling of dredged materials (DM) and various industrial by-products including steelmaking slags is a beneficial option to restore and create seagrass beds. To evaluate the applicability of DM and dephosphorization slag (Slag) as basal media of seagrass beds, we carried out mesocosm experiments and core incubation experiments in a land-based flow-through seawater tank over a year. During the mesocosm experiment, no difference was found in growth of eelgrass (Zostera marina L.) and macrobenthic community structures between Slag-based sediments and sand-based control experiments, even though Slag-based sediments exhibited substantially higher pH than sand-based sediments. During the core incubation experiment, we investigated detailed variation and distributions of pH and nutrients, and diffusion fluxes of nutrients between the sediment/seawater interface. Though addition of Slag induced high pH up to 10.7 in deep layers (< 5 cm), the surface pH decreased rapidly within 10 days. Concentrations of dissolved inorganic nitrogen were comparable between Slag- and sand-based sediments, whereas dissolved phosphate concentration was substantially reduced by the addition of Slag. The low concentrations of phosphate was likely due to precipitation with calcium under high pH condition. Diffusion fluxes of nutrients from the cores were comparable with those reported in natural coastal systems. It was suggested that the mixture of Slag and DM is applicable as basal media for construction of artificial seagrass beds.

Hydraulic conductivity changes in river valley sediments caused by river bank filtration - an analysis of specific well capacity

NASA Astrophysics Data System (ADS)

Kaczmarek, Piotr M. J.

2017-06-01

Parameters from archive data of the Kalisz-Lis waterworks, located in the Prosna River valley south of Kalisz, have been analysed. Well barrier discharges groundwater from Quaternary sediments which is mixed with riverbank filtration water. The analysis focused on specific well capacity, a parameter that represents the technical and natural aspects of well life. To exclude any aging factor, an examination of specific well capacity acquired only in the first pumping tests of a new well was performed. The results show that wells drilled between 1961 and 2004 have similar values of specific well capacity and prove that > 40 years discharge has had little influence on hydrodynamic conditions of the aquifer, i.e., clogging has either not occurred or is of low intensity. This implies that, in the total water balance of the Kalisz- Lis well barrier, riverbank filtration water made little contribution. In comparison, a similar analysis of archive data on the Mosina-Krajkowo wells of two generations of well barriers located in the Warta flood plains was performed; this has revealed a different trend. There was a significant drop in specific well capacity from the first pumping test of substitute wells. Thus, long-term groundwater discharge in the Warta valley has had a great impact on the reduction of the hydraulic conductivity of sediments and has worsened hydrodynamic conditions due to clogging of river bed and aquifer, which implies a large contribution of riverbank filtration water in the total water well balance. For both well fields conclusions were corroborated by mathematical modeling; in Kalisz-Lis 16.2% of water comes from riverbank filtration, whereas the percentage for Mosina-Krajkowo is 78.9%.

Avian Incubation Patterns Reflect Temporal Changes in Developing Clutches

PubMed Central

2013-01-01

Incubation conditions for eggs influence offspring quality and reproductive success. One way in which parents regulate brooding conditions is by balancing the thermal requirements of embryos with time spent away from the nest for self-maintenance. Age related changes in embryo thermal tolerance would thus be expected to shape parental incubation behavior. We use data from unmanipulated Black-capped Chickadee (Poecile atricapillus) nests to examine the temporal dynamics of incubation, testing the prediction that increased heat flux from eggs as embryos age influences female incubation behavior and/or physiology to minimize temperature fluctuations. We found that the rate of heat loss from eggs increased with embryo age. Females responded to increased egg cooling rates by altering incubation rhythms (more frequent, shorter on- and off- bouts), but not brood patch temperature. Consequently, as embryos aged, females were able to increase mean egg temperature and decrease variation in temperature. Our findings highlight the need to view full incubation as more than a static rhythm; rather, it is a temporally dynamic and finely adjustable parental behavior. Furthermore, from a methodological perspective, intra- and inter-specific comparisons of incubation rhythms and average egg temperatures should control for the stage of incubation. PMID:23840339

Accuracy of egg flotation throughout incubation to determine embryo age and incubation day in water bird nests

USGS Publications Warehouse

Ackerman, Joshua T.; Eagles-Smith, Collin A.

2010-01-01

Floating bird eggs to estimate their age is a widely used technique, but few studies have examined its accuracy throughout incubation. We assessed egg flotation for estimating hatch date, day of incubation, and the embryo's developmental age in eggs of the American Avocet (Recurvirostra americana), Black-necked Stilt (Himantopus mexicanus), and Forster's Tern (Sterna forsteri). Predicted hatch dates based on egg flotation during our first visit to a nest were highly correlated with actual hatch dates (r = 0.99) and accurate within 2.3 ?? 1.7 (SD) days. Age estimates based on flotation were correlated with both day of incubation (r = 0.96) and the embryo's developmental age (r = 0.86) and accurate within 1.3 ?? 1.6 days and 1.9 ?? 1.6 days, respectively. However, the technique's accuracy varied substantially throughout incubation. Flotation overestimated the embryo's developmental age between 3 and 9 days, underestimated age between 12 and 21 days, and was most accurate between 0 and 3 days and 9 and 12 days. Age estimates based on egg flotation were generally accurate within 3 days until day 15 but later in incubation were biased progressively lower. Egg flotation was inaccurate and overestimated embryo age in abandoned nests (mean error: 7.5 ?? 6.0 days). The embryo's developmental age and day of incubation were highly correlated (r = 0.94), differed by 2.1 ?? 1.6 days, and resulted in similar assessments of the egg-flotation technique. Floating every egg in the clutch and refloating eggs at subsequent visits to a nest can refine age estimates. ?? The Cooper Ornithological Society 2010.

Does incubation temperature fluctuation influence hatchling phenotypes in reptiles? A test using parthenogenetic geckos.

PubMed

Andrewartha, Sarah J; Mitchell, Nicola J; Frappell, Peter B

2010-01-01

Many lineages of parthenogenetic organisms have persisted through significant environmental change despite the constraints imposed by their fixed genotype and limited evolutionary potential. The ability of parthenogens to occur sympatrically with sexual relatives may in part be due to phenotypic plasticity in their responses to their environment, especially with respect to incubation temperature--a maternally selected trait. Here we measured the incubation temperatures selected by two lineages of triploid parthenogenic geckos in the Heteronotia binoei complex by allowing them to deposit clutches along a thermal gradient. The average nest temperature selected was 28.4 degrees C, with no significant differences between parthenogenic races or individual clones. To investigate the effect of nest-temperature variability on physiological and morphological traits, we incubated eggs from different races at one of four incubation regimes (32 degrees +/- 0 degrees, +/- 3 degrees , +/- 5 degrees , or +/- 9 degrees C). Embryos incubated at constant 32 degrees C developed faster than embryos reared under increasing extremes of diel temperature fluctuation (+/- 3 degrees , +/- 5 degrees C), and incubation at 32 degrees +/- 9 degrees C was unsuccessful. Incubation regime had no effect on the body size, preferred substrate temperature, or mass-specific .V(O2) of hatchlings. However, parthenogenic race had a significant effect on egg mass, tail length, snout-to-vent length, total length, and .V(O2) . We conclude that developmental traits are strongly influenced by clonal genotypes in this parthenogenic complex but are well buffered against fluctuations in incubation temperature.

Linking microbial heterotrophic activity and sediment lithology in oxic, oligotrophic sub-seafloor sediments of the north atlantic ocean.

PubMed

Picard, Aude; Ferdelman, Timothy G

2011-01-01

Microbial heterotrophic activity was investigated in oxic sub-seafloor sediments at North Pond, a sediment pond situated at 23°N on the western flank of the Mid-Atlantic Ridge. The North Pond sediments underlie the oligotrophic North Atlantic Gyre at 4580-m water depth and cover a 7-8 million-year-old basaltic crust aquifer through which seawater flows. Discrete samples for experimentation were obtained from up to ~9 m-long gravity cores taken at 14 stations in the North Pond area. Potential respiration rates were determined in sediment slurries incubated under aerobic conditions with (14)C-acetate. Microbial heterotrophic activity, as defined by oxidation of acetate to CO(2) (with O(2) as electron acceptor), was detected in all 14 stations and all depths sampled. Potential respiration rates were generally low (<0.2 nmol of respired acetate cm(-3) d(-1)) in the sediment, but indicate that microbial heterotrophic activity occurs in deep-sea, oxic, sub-seafloor sediments. Furthermore, discernable differences in activity existed between sites and within given depth profiles. At seven stations, activity was increased by several orders of magnitude at depth (up to ~12 nmol of acetate respired cm(-3) d(-1)). We attempted to correlate the measures of activity with high-resolution color and element stratigraphy. Increased activities at certain depths may be correlated to variations in the sediment geology, i.e., to the presence of dark clay-rich layers, of sandy layers, or within clay-rich horizons presumably overlying basalts. This would suggest that the distribution of microbial heterotrophic activity in deeply buried sediments may be linked to specific lithologies. Nevertheless, high-resolution microbial examination at the level currently enjoyed by sedimentologists will be required to fully explore this link.

Linking Microbial Heterotrophic Activity and Sediment Lithology in Oxic, Oligotrophic Sub-Seafloor Sediments of the North Atlantic Ocean

PubMed Central

Picard, Aude; Ferdelman, Timothy G.

2011-01-01

Microbial heterotrophic activity was investigated in oxic sub-seafloor sediments at North Pond, a sediment pond situated at 23°N on the western flank of the Mid-Atlantic Ridge. The North Pond sediments underlie the oligotrophic North Atlantic Gyre at 4580-m water depth and cover a 7–8 million-year-old basaltic crust aquifer through which seawater flows. Discrete samples for experimentation were obtained from up to ~9 m-long gravity cores taken at 14 stations in the North Pond area. Potential respiration rates were determined in sediment slurries incubated under aerobic conditions with 14C-acetate. Microbial heterotrophic activity, as defined by oxidation of acetate to CO2 (with O2 as electron acceptor), was detected in all 14 stations and all depths sampled. Potential respiration rates were generally low (<0.2 nmol of respired acetate cm−3 d−1) in the sediment, but indicate that microbial heterotrophic activity occurs in deep-sea, oxic, sub-seafloor sediments. Furthermore, discernable differences in activity existed between sites and within given depth profiles. At seven stations, activity was increased by several orders of magnitude at depth (up to ~12 nmol of acetate respired cm−3 d−1). We attempted to correlate the measures of activity with high-resolution color and element stratigraphy. Increased activities at certain depths may be correlated to variations in the sediment geology, i.e., to the presence of dark clay-rich layers, of sandy layers, or within clay-rich horizons presumably overlying basalts. This would suggest that the distribution of microbial heterotrophic activity in deeply buried sediments may be linked to specific lithologies. Nevertheless, high-resolution microbial examination at the level currently enjoyed by sedimentologists will be required to fully explore this link. PMID:22207869

A novel approach to the assess biotic oxygen consumption in marine sediment communities

NASA Astrophysics Data System (ADS)

Baranov, Victor; Queiros, Ana; Widdicombe, Stephen; Stephens, Nick; Lessin, Gennadi; Krause, Stefan; Lewandowski, Joerg

2016-04-01

Bioturbation , the mixing of the sediment matrix by burrowing animals impacts sediment metabolism, including respiration through redistribution of particulate organics, changes in bacterial biota diversity and acitivity, as well as via burrowing fauna's own metabolism. Bioturbation, reflecting faunal activity, is also a proxy for the general sedimentary ecosystem health, and can be impacted by many of emerging marine environmental issues such as ocean acidification, warming and the occurrence of heat waves. Sedimentary oxygen consumption is often taken as a proxy for the activity of bioturbating fauna, but determining baselines can be difficult because of the confounding effects of other fauna and microbes present in sediments, as well as irnorganic processes that consume oxygen. Limitations therefore exist in current methodologies, and numerous confounding factors are hampering progress in this area. Here, we present novel method for the assessment of sediment respiration which is expected to be affected only by the biogenic oxygen consumption (namely aerobic respiration). As long as tracer reduction "immune" to inorganic oxygen consumption, so that measurements using this method can be used, alongside traditional methods, to decouple biological respiration from inorganic oxygen consumption reactions. The tracer is easily detectable, non-toxic and can be applied in systems with constant oxygen supply. The latter allow for incubation without the need to to work with unsealed experimental units, bringing procedural advantage over traditional methods. Consequently assessed bioturbating fauna is not exposed to hypoxia and additional stress. Here, we had applied system for the first time to investigate impacts of a common North-Atlantic bioturbator, the brittle star Amphiura filiformis, - on respiration of marine sediments. Two series of experiments were conducted with animals and sediment collected from Cawsand Bay, Plymouth, UK Preliminary results show that tracer

Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edlund, A.; Jansson, J.

The aim of this study was to enrich and identify psychrotolerant phenanthrenedegrading bacteria from polluted Baltic Sea sediments. Polyaromatic hydrocarbon (PAH)-contaminated sediments were spiked with phenanthrene and incubated for 2 months in the presence of bromodeoxyuridine that is incorporated into the DNA of replicating cells. The bromodeoxyuridine-incorporated DNA was extracted by immunocapture and analyzed by terminal-restriction fragment length polymorphism and 16S rRNA gene cloning and sequencing to identify bacterial populations that were growing. In addition, degradation genes were quantified in the bromodeoxyuridine-incorporated DNA by real-time PCR. Phenanthrene concentrations decreased after 2 months of incubation in the phenanthrene-enriched sediments and thismore » reduction correlated to increases in copy numbers of xylE and phnAc dioxygenase genes. Representatives of Exiguobacterium, Schewanella,Methylomonas, Pseudomonas, Bacteroides and an uncultured Deltaproteobacterium and a Gammaproteobacterium dominated the growing community in the phenanthrene spiked sediments. Isolates that were closely related to three of these bacteria (two pseudomonads and an Exiguobacterium sp.) could reduce phenanthrene concentrations in pure cultures and they all harbored phnAc dioxygenase genes. These results confirm that this combination of culture-based and molecular approaches was useful for identification of actively growing bacterial species with a high potential for phenanthrene degradation.« less

Mineralization Of PAHs In Coal-Tar Impacted Aquifer Sediments And Associated Microbial Community Structure Investigated With FISH

EPA Science Inventory

The microbial community structure and mineralization of polycyclic aromatic hydrocarbons (PAHs) in a coal-tar contaminated aquifer were investigated spatially using fluorescence in situ hybridization (FISH) and in laboratory-scale incubations of the aquifer sediments. DAPI-detect...

Stochastic Modeling Approach to the Incubation Time of Prionic Diseases

NASA Astrophysics Data System (ADS)

Ferreira, A. S.; da Silva, M. A.; Cressoni, J. C.

2003-05-01

Transmissible spongiform encephalopathies are neurodegenerative diseases for which prions are the attributed pathogenic agents. A widely accepted theory assumes that prion replication is due to a direct interaction between the pathologic (PrPSc) form and the host-encoded (PrPC) conformation, in a kind of autocatalytic process. Here we show that the overall features of the incubation time of prion diseases are readily obtained if the prion reaction is described by a simple mean-field model. An analytical expression for the incubation time distribution then follows by associating the rate constant to a stochastic variable log normally distributed. The incubation time distribution is then also shown to be log normal and fits the observed BSE (bovine spongiform encephalopathy) data very well. Computer simulation results also yield the correct BSE incubation time distribution at low PrPC densities.

Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism

PubMed Central

Rowe, Annette R.; Chellamuthu, Prithiviraj; Lam, Bonita; Okamoto, Akihiro; Nealson, Kenneth H.

2015-01-01

Little is known about the importance and/or mechanisms of biological mineral oxidation in sediments, partially due to the difficulties associated with culturing mineral-oxidizing microbes. We demonstrate that electrochemical enrichment is a feasible approach for isolation of microbes capable of gaining electrons from insoluble minerals. To this end we constructed sediment microcosms and incubated electrodes at various controlled redox potentials. Negative current production was observed in incubations and increased as redox potential decreased (tested −50 to −400 mV vs. Ag/AgCl). Electrode-associated biomass responded to the addition of nitrate and ferric iron as terminal electron acceptors in secondary sediment-free enrichments. Elemental sulfur, elemental iron and amorphous iron sulfide enrichments derived from electrode biomass demonstrated products indicative of sulfur or iron oxidation. The microbes isolated from these enrichments belong to the genera Halomonas, Idiomarina, Marinobacter, and Pseudomonas of the Gammaproteobacteria, and Thalassospira and Thioclava from the Alphaproteobacteria. Chronoamperometry data demonstrates sustained electrode oxidation from these isolates in the absence of alternate electron sources. Cyclic voltammetry demonstrated the variability in dominant electron transfer modes or interactions with electrodes (i.e., biofilm, planktonic or mediator facilitated) and the wide range of midpoint potentials observed for each microbe (from 8 to −295 mV vs. Ag/AgCl). The diversity of extracellular electron transfer mechanisms observed in one sediment and one redox condition, illustrates the potential importance and abundance of these interactions. This approach has promise for increasing our understanding the extent and diversity of microbe mineral interactions, as well as increasing the repository of microbes available for electrochemical applications. PMID:25642220

Geochemical evidence for cryptic sulfur cycling in salt marsh sediments

NASA Astrophysics Data System (ADS)

Mills, Jennifer V.; Antler, Gilad; Turchyn, Alexandra V.

2016-11-01

Cryptic sulfur cycling is an enigmatic process in which sulfate is reduced to some lower-valence state sulfur species and subsequently quantitatively reoxidized; the rate and microbial energetics of this process and how prevalent it may be in the environment remain controversial. Here we investigate sulfur cycling in salt marsh sediments from Norfolk, England where we observe high ferrous iron concentrations with no depletion of sulfate or change in the sulfur isotope ratio of that sulfate, but a 5‰ increase in the oxygen isotope ratio in sulfate, indicating that sulfate has been through a reductive cycle replacing its oxygen atoms. This cryptic sulfur cycle was replicated in laboratory incubations using 18O-enriched water, demonstrating that the field results do not solely result from mixing processes in the natural environment. Numerical modeling of the laboratory incubations scaled to represent the salt marsh sediments suggests that the uptake rate of sulfate during this cryptic sulfur cycling is similar to the uptake rate of sulfate during the fastest microbial sulfate reduction that has been measured in the natural environment. The difference is that during cryptic sulfur cycling, all of the sulfur is subsequently reoxidized to sulfate. We discuss mechanisms for this pathway of sulfur cycling including the possible link to the subsurface iron cycle.

Humidification of incubators.

PubMed Central

Harpin, V A; Rutter, N

1985-01-01

The effect of increasing the humidity in incubators was examined in 62 infants of less than 30 weeks' gestation. Thirty three infants nursed in high humidity for two weeks were compared retrospectively with 29 infants from an earlier study who were nursed under plastic bubble blankets or with topical paraffin but without raised humidity. Humidification reduced skin water loss and improved maintenance of body temperature from birth, but did not delay the normal postnatal maturation of the skin. Infants nursed without humidity frequently became hypothermic in spite of a high incubator air temperature. These advantages must be weighed against the finding that overheating was more common and Pseudomonas was more commonly isolated from the infants. It is recommended that incubator humidity is raised for babies under 30 weeks' gestation in the first days of life but meticulous attention should be paid to fluid balance, avoiding overheating, and cleansing of the humidifier reservoir. PMID:3985653

Simulated effects of existing and proposed surface-water impoundments and gas-well pads on streamflow and suspended sediment in the Cypress Creek watershed, Arkansas

USGS Publications Warehouse

Hart, Rheannon M.

2014-01-01

The Arkansas Natural Resources Commission and the Arkansas Department of Environmental Quality list suspended sediment from “poor pastures” as a primary source of nonpoint-source pollution in north-central Arkansas, but unpaved (gravel) roads are another important source of suspended sediment. Because of the high sediment-loading rates associated with gravel roads and the large amount of pasture within the watershed, the factors most responsible for suspended sediment within the Cypress Creek watershed are likely associated more with the pastureland and gravel roads, than factors associated with gas-well pads/pipelines.

Curriculum R&D: Incubating Change in Higher Education

ERIC Educational Resources Information Center

Sunderman, Judith Ann

2011-01-01

This mixed methods study examined incubation as a strategy for curricular change. The purpose was to examine the characteristics and effectiveness of curriculum incubation from a faculty perspective. The conceptual frame for this study proposed combining a grounded theory of incubation with concepts from organizational creativity to explain…

Relative importance of methylotrophic methanogenesis in sediments of the Western Mediterranean Sea

NASA Astrophysics Data System (ADS)

Zhuang, Guang-Chao; Heuer, Verena B.; Lazar, Cassandre S.; Goldhammer, Tobias; Wendt, Jenny; Samarkin, Vladimir A.; Elvert, Marcus; Teske, Andreas P.; Joye, Samantha B.; Hinrichs, Kai-Uwe

2018-03-01

Microbial production of methane is an important terminal metabolic process during organic matter degradation in marine sediments. It is generally acknowledged that hydrogenotrophic and acetoclastic methanogenesis constitute the dominant pathways of methane production; the importance of methanogenesis from methylated compounds remains poorly understood. We conducted various biogeochemical and molecular genetic analyses to characterize substrate availability, rates of methanogenesis, and methanogen community composition, and further evaluated the contribution of different substrates and pathways for methane production in deltaic surface and subsurface sediments of the Western Mediterranean Sea. Major substrates representing three methanogenic pathways, including H2, acetate, and methanol, trimethylamine (TMA), and dimethylsulfide (DMS), were detected in the pore waters and sediments, and exhibited variability over depth and between sites. In accompanying incubation experiments, methanogenesis rates from various 14C labeled substrates varied as well, suggesting that environmental factors, such as sulfate concentration and organic matter quality, could significantly influence the relative importance of individual pathway. In particular, methylotrophic and hydrogenotrophic methanogenesis contributed to the presence of micromolar methane concentrations in the sulfate reduction zone, with methanogenesis from methanol accounting for up to 98% of the total methane production in the topmost surface sediment. In the sulfate-depleted zone, hydrogenotrophic methanogenesis was the dominant methanogenic pathway (67-98%), and enhanced methane production from acetate was observed in organic-rich sediment (up to 31%). Methyl coenzyme M reductase gene (mcrA) analysis revealed that the composition of methanogenic communities was generally consistent with the distribution of methanogenic activity from different substrates. This study provides the first quantitative assessment of

[Sediment-water flux and processes of nutrients and gaseous nitrogen release in a China River Reservoir].

PubMed

Chen, Zhu-hong; Chen, Neng-wang; Wu, Yin-qi; Mo, Qiong-li; Zhou, Xing-peng; Lu, Ting; Tian, Yun

2014-09-01

The key processes and fluxes of nutrients (N and P) and gaseous N (N2 and N2O) across the sediment-water interface in a river reservoir (Xipi) of the Jiulong River watershed in southeast China were studied. Intact core sediment incubation of nutrients exchange, in-situ observation and lab incubation of excess dissolved N2 and N2O (products of nitrification, denitrification and Anammox), and determination of physiochemical and microbe parameters were carried out in 2013 for three representative sites along the lacustrine zone of the reservoir. Results showed that ammonium and phosphate were generally released from sediment to overlying water [with averaged fluxes of N (479.8 ± 675.4) mg. (m2. d)-1 and P (4. 56 ± 0.54) mg. (m2 d) -1] , while nitrate and nitrite diffused into the sediment. Flood events in the wet season could introduce a large amount of particulate organic matter that would be trapped by the dam reservoir, resulting in the high release fluxes of ammonium and phosphate observed in the following low-flow season. No clear spatial variation of sediment nutrient release was found in the lacustrine zone of the reservoir. Gaseous N release was dominated by excess dissolved N2 (98% of total), and the N2 flux from sediment was (15.8 ± 12. 5) mg (m2. d) -1. There was a longitudinal and vertical variation of excess dissolved N2, reflecting the combined results of denitrification and Anammox occurring in anoxic sediment and fluvial transport. Nitrification mainly occurred in the lower lacustrine zone, and the enrichment of N2O was likely regulated by the ratio of ammonium to DIN in water.

Bacterial abundance and activity in deep-sea sediments from the eastern North Atlantic

NASA Astrophysics Data System (ADS)

Eardly, D. F.; Carton, M. W.; Gallagher, J. M.; Patching, J. W.

Results are presented from four cruises to the Porcupine Abyssal Plain (PAP site) that took place during the BENGAL project from September 1996 to March 1998, and two cruises to the PAP and an oligotrophic site (EUMELI) that took place during the DEEPSEAS project between September 1993 and March 1994. Bacterial abundances in sediment and sediment contact water were measured by epifluorescence microscopy. Bacterial activity was determined by 3H-thymidine incorporation as a measure of DNA synthesis, and by 3H-leucine incorporation as a measure of protein synthesis. Activities were measured under atmospheric and in situ pressures and temperatures. Bacterial activity was usually higher in samples incubated at in situ pressure than those incubated at atmospheric pressure indicating that a barophilic community was dominant. Inter-cruise comparisons of abundance and activity during the BENGAL project showed no firm evidence of there being a seasonal response in the benthic microbial community to any episodic phytodetritus event. This was probably because of inter-annual variations in the quality and quantity of phytodetritus deposition at the PAP site, the rapid remineralization of fresh organic material by the microbial communities and the timing of cruises to the study area. 3H-thymidine and 3H-leucine incorporation in sediments was higher during the BENGAL period than the DEEPSEAS programme. A methodological change in the 3H-thymidine incorporation technique for sediments may explain the differences in DNA synthesis observed between the two projects, whereas the lower levels of protein synthesis observed during the DEEPSEAS programme probably reflected both inter-annual variations in activity at the PAP site and the lower productivity that prevailed at surface at the EUMELI oligotrophic site. Rates of 3H-thymidine incorporation in sediment contact water were similar during both projects.

The importance of having a partner: male help releases females from time limitation during incubation in birds.

PubMed

Matysioková, Beata; Remeš, Vladimír

2014-03-07

Male contribution to parental care varies widely among avian species. Yet the reasons for this variation, as well as its consequences, are still unclear. Because the amount of care provided by one sex is ultimately constrained by the time available for energy acquisition, contribution by the other sex should increase when overall parental workload is high. We tested this prediction by analyzing male contribution to incubation in 528 populations of 320 species of passerines, where females usually devote more time to incubation than males. Our worldwide sample included species with female-only parental care (the male is not present), incubation feeding (the male feeds the incubating female), and shared incubation (both sexes incubate the eggs). Overall nest attentiveness was greatest in species with shared incubation followed by species with incubation feeding and lowest in species with female-only care. Nest attentiveness and the degree of male contribution to incubation in species with shared incubation were very strongly correlated, whereas this correlation was absent in females. Interestingly, female contribution decreased towards the equator while male contribution did not change significantly with latitude. Hence, relative male incubation effort increased towards the equator, whereas that of female decreased. In species with incubation feeding, female nest attentiveness increased with the frequency of male feeding. These findings support the hypothesis that male help is indispensable for increasing nest attentiveness in birds, either in the form of incubation feeding (supply of energy) or direct incubation of eggs. We conclude that energy acquisition constraints might be a potent force driving sex-specific contribution to parental care.

Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal Potomac River

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lovley, D.R.; Phillips, E.J.P.

1986-10-01

The distribution of Fe(III), its availability for microbial reduction, and factors controlling Fe(III) availability were investigated in sediments from a freshwater site in the Potomac River Estuary. Fe(III) reduction in sediments incubated under anaerobic conditions and depth profiles of oxalate-extractable Fe(III) indicated that Fe(III) reduction was limited to depths of 4 cm or less, with the most intense Fe(III) reduction in the top 1 cm. In incubations of the upper 4 cm of the sediments, Fe(III) reduction was as important as methane production as a pathway for anaerobic electron flow because of the high rates of Fe(III) reduction in themore » 0- 0.5-cm interval. Most of the oxalate-extractable Fe(III) in the sediments was not reduced and persisted to a depth of at least 20 cm. The incomplete reduction was not the result of a lack of suitable electron donors. The oxalate-extractable Fe(III) that was preserved in the sediments was considered to be in a form other than amorphous Fe(III) oxyhydroxide, since synthetic amorphous Fe(III) oxyhydroxide, amorphous Fe(III) oxyhydroxide adsorbed onto clay, and amorphous Fe(III) oxyhydroxide saturated with adsorbed phosphate or fulvic acids were all readily reduced. Fe/sub 3/O/sub 4/ and the mixed Fe(III)-Fe(II) compound(s) that were produced during the reduction of amorphous Fe(III) oxyhydroxide in an enrichment culture were oxalate extractable but were not reduced, suggesting that mixed Fe(III)-Fe(II) compounds might account for the persistence of oxalate-extractable Fe(III) in the sediments.« less

Optimal culture incubation time in orthopedic device-associated infections: a retrospective analysis of prolonged 14-day incubation.

PubMed

Schwotzer, Nora; Wahl, Peter; Fracheboud, Dominique; Gautier, Emanuel; Chuard, Christian

2014-01-01

Accurate diagnosis of orthopedic device-associated infections can be challenging. Culture of tissue biopsy specimens is often considered the gold standard; however, there is currently no consensus on the ideal incubation time for specimens. The aim of our study was to assess the yield of a 14-day incubation protocol for tissue biopsy specimens from revision surgery (joint replacements and internal fixation devices) in a general orthopedic and trauma surgery setting. Medical records were reviewed retrospectively in order to identify cases of infection according to predefined diagnostic criteria. From August 2009 to March 2012, 499 tissue biopsy specimens were sampled from 117 cases. In 70 cases (59.8%), at least one sample showed microbiological growth. Among them, 58 cases (82.9%) were considered infections and 12 cases (17.1%) were classified as contaminations. The median time to positivity in the cases of infection was 1 day (range, 1 to 10 days), compared to 6 days (range, 1 to 11 days) in the cases of contamination (P < 0.001). Fifty-six (96.6%) of the infection cases were diagnosed within 7 days of incubation. In conclusion, the results of our study show that the incubation of tissue biopsy specimens beyond 7 days is not productive in a general orthopedic and trauma surgery setting. Prolonged 14-day incubation might be of interest in particular situations, however, in which the prevalence of slow-growing microorganisms and anaerobes is higher.

Simulation of prenatal maternal sounds in NICU incubators: a pilot safety and feasibility study.

PubMed

Panagiotidis, John; Lahav, Amir

2010-10-01

This pilot study evaluated the safety and feasibility of an innovative audio system for transmitting maternal sounds to NICU incubators. A sample of biological sounds, consisting of voice and heartbeat, were recorded from a mother of a premature infant admitted to our unit. The maternal sounds were then played back inside an unoccupied incubator via a specialized audio system originated and compiled in our lab. We performed a series of evaluations to determine the safety and feasibility of using this system in NICU incubators. The proposed audio system was found to be safe and feasible, meeting criteria for humidity and temperature resistance, as well as for safe noise levels. Simulation of maternal sounds using this system seems achievable and applicable and received local support from medical staff. Further research and technology developments are needed to optimize the design of the NICU incubators to preserve the acoustic environment of the womb.

Nitrous Oxide Production and Fluxes from Coastal Sediments under Varying Environmental Conditions

NASA Astrophysics Data System (ADS)

Ziebis, W.; Wankel, S. D.; de Beer, D.; Dentinger, J.; Buchwald, C.; Charoenpong, C.

2014-12-01

Although coastal zones represent important contributors to the increasing levels of atmospheric nitrous oxide (N2O), it is still unclear which role benthic processes play and whether marine sediments represent sinks or sources for N2O, since interactions among closely associated microbial groups lead to a high degree of variability. In addition, coastal areas are extremely dynamic regions, often exposed to increased nutrient loading and conditions of depleted oxygen. We investigated benthic N2O fluxes and how environmental conditions affect N2O production in different sediments at 2 different geographical locations (German Wadden Sea, a California coastal lagoon). At each location, a total of 32 sediment cores were taken in areas that differed in sediment type, organic content and pore-water nutrient concentrations, as well as in bioturbation activity. Parallel cores were incubated under in-situ conditions, low oxygen and increased nitrate levels for 10 days. Zones of N2O production and consumption were identified in intact cores by N2O microprofiles at the beginning and end of the experiments. In a collaborative effort to determine the dominant sources of N2O, samples were taken throughout the course of the experiments for the determination of the isotopic composition of N2O (as well as nitrate, nitrite and ammonium). Our results indicate that both, nitrate addition and low oxygen conditions in the overlying water, caused an increase of subsurface N2O production in most sediments, with a high variability between different sediment types. N2O production in the sediments was accompanied by N2O consumption, reducing the fluxes to the water column. In general, organic rich sediments showed the strongest response to environmental changes with increased production and efflux of N2O into the overlying water. Bioturbation activity added to the complexity of N2O dynamics by an increase in nitrification-denitrification processes, as well as enhanced pore-water transport

Small Technology Business Incubation Needs

DOE Office of Scientific and Technical Information (OSTI.GOV)

None, None

2007-12-31

This report contains a summary of typical business incubation needs of small technology companies. This document will serve as a guide in the design and implementation of services offered by the National Security Technology Incubator (NSTI), an incubator program being designed and developed as part of the National Security Preparedness Project (NSPP), performed under a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes a brief description of the methodology used to perform the needs assessment and services proposed to meet the needs of client companies. The purpose of the NSPP is to promote national security technologiesmore » through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with national security technology applications by nurturing them through critical stages of early development. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety, security, and protection of the homeland.« less

Distribution, activity and function of short-chain alkane degrading phylotypes in hydrothermal vent sediments

NASA Astrophysics Data System (ADS)

Adams, M. M.; Joye, S. B.; Hoarfrost, A.; Girguis, P. R.

2012-12-01

hydrocarbon species characteristic of these metalliferous sediments. These systems are also characterized by sharp physicochemical gradients that have been shown to have a pronounced effect on microbial ecology and activity. Sediments were collected from a Middle Valley field with relatively high concentrations of short-chain alkanes and incubated in anaerobic batch reactors with each individual alkane (C1, C2, C3 and C4, respectively) at a range of temperatures (25, 55 and 75 °C) to mimic environmental physico-chemical conditions in a closed system. Stable carbon isotope ratios and radiotracer incubations provide clear evidence for C2-C4 alkane oxidation in the sediments over time. Upon identifying sediments with anaerobic alkane oxidation activity, microbial communities were screened via 16S rRNA pyrosequencing, and key phylotypes were then quantified using both molecular and microscopic methods. There were shifts in overall community composition and putative alkane-oxidizing phylotypes after the incubation period with the alkane substrates. These are the first evidence to date indicating that anaerobic C2-C4 alkane oxidation occurs across a broad range of temperatures in metalliferous sediments.

Fate of nitrogen in overlying water with biochar addition to sediment in planted ditches.

PubMed

Cheng, Qianding; Cheng, Hongguang; Lu, Lu; Pu, Xiao; Wu, Zhenzhen; Sun, Haixu

2018-02-21

Best management practice (BMP) in drainage ditch systems is of high concern due to its importance in intercepting and removing pollution. Biochar has recently become an interesting option for agricultural pollution elimination, but knowledge is still limited on the fate of nitrogen (N) in drainage ditch systems with biochar added into the sediment. This isotope tracer study examined the effects of biochar addition into the sediment on the fate of inorganic N ( 15 N-NO 3 - and 15 N-NH 4 + ) in sediment microcosms through a 93 day incubation experiment. Four types of sediment microcosm (sediment only, sediment + biochar, sediment + plant, sediment + biochar + plant) were set to investigate N migration and transformation using 15 N pool dilution. The results indicated that 0.75% biochar addition significantly increased sediment pH and water holding capacity by 0.29 and 2.6%, respectively. Biochar addition suppressed sediment 15 N-N 2 O emissions and decreased 15 N uptake by Calamagrostis angustifolia. From the 15 N distribution in different sediment layers, it was found that biochar may increase the risk of N leaching and speed up its downward mobility. Meanwhile, 15 N fate was affected by the planting of Calamagrostis angustifolia, exhibiting reduced leakage and residue in sediment. Vegetated microcosms suppressed N 2 O emissions, as the Calamagrostis angustifolia effectively competed with microbes and utilized N for its own growth and development. Therefore, Calamagrostis angustifolia could be beneficial in the removal of agricultural non-point source nitrogen pollution as a potential option for BMP.

A systematic review and meta-analysis on the incubation period of Campylobacteriosis.

PubMed

Awofisayo-Okuyelu, A; Hall, I; Adak, G; Hawker, J I; Abbott, S; McCARTHY, N

2017-08-01

Accurate knowledge of pathogen incubation period is essential to inform public health policies and implement interventions that contribute to the reduction of burden of disease. The incubation period distribution of campylobacteriosis is currently unknown with several sources reporting different times. Variation in the distribution could be expected due to host, transmission vehicle, and organism characteristics, however, the extent of this variation and influencing factors are unclear. The authors have undertaken a systematic review of published literature of outbreak studies with well-defined point source exposures and human experimental studies to estimate the distribution of incubation period and also identify and explain the variation in the distribution between studies. We tested for heterogeneity using I 2 and Kolmogorov-Smirnov tests, regressed incubation period against possible explanatory factors, and used hierarchical clustering analysis to define subgroups of studies without evidence of heterogeneity. The mean incubation period of subgroups ranged from 2·5 to 4·3 days. We observed variation in the distribution of incubation period between studies that was not due to chance. A significant association between the mean incubation period and age distribution was observed with outbreaks involving only children reporting an incubation of 1·29 days longer when compared with outbreaks involving other age groups.

Benefits of Incubation on Divergent Thinking

ERIC Educational Resources Information Center

Chiang, Noelle C.; Chen, Meng-Liang

2017-01-01

Studies on whether fixation cues provided in the first episode of divergent thinking tasks influence creative outcomes after incubation, as they do for convergent problem-solving tasks, remain limited. This research examined the beneficial effects of incubation using the delayed- and immediate-incubation paradigms. Participants in Experiment 1…

The importance of having a partner: male help releases females from time limitation during incubation in birds

PubMed Central

2014-01-01

Introduction Male contribution to parental care varies widely among avian species. Yet the reasons for this variation, as well as its consequences, are still unclear. Because the amount of care provided by one sex is ultimately constrained by the time available for energy acquisition, contribution by the other sex should increase when overall parental workload is high. We tested this prediction by analyzing male contribution to incubation in 528 populations of 320 species of passerines, where females usually devote more time to incubation than males. Our worldwide sample included species with female-only parental care (the male is not present), incubation feeding (the male feeds the incubating female), and shared incubation (both sexes incubate the eggs). Results Overall nest attentiveness was greatest in species with shared incubation followed by species with incubation feeding and lowest in species with female-only care. Nest attentiveness and the degree of male contribution to incubation in species with shared incubation were very strongly correlated, whereas this correlation was absent in females. Interestingly, female contribution decreased towards the equator while male contribution did not change significantly with latitude. Hence, relative male incubation effort increased towards the equator, whereas that of female decreased. In species with incubation feeding, female nest attentiveness increased with the frequency of male feeding. Conclusions These findings support the hypothesis that male help is indispensable for increasing nest attentiveness in birds, either in the form of incubation feeding (supply of energy) or direct incubation of eggs. We conclude that energy acquisition constraints might be a potent force driving sex-specific contribution to parental care. PMID:24607032

Biochemical Mechanisms and Microorganisms Involved in Anaerobic Testosterone Metabolism in Estuarine Sediments

PubMed Central

Shih, Chao-Jen; Chen, Yi-Lung; Wang, Chia-Hsiang; Wei, Sean T.-S.; Lin, I-Ting; Ismail, Wael A.; Chiang, Yin-Ru

2017-01-01

Current knowledge on the biochemical mechanisms underlying microbial steroid metabolism in anaerobic ecosystems is extremely limited. Sulfate, nitrate, and iron [Fe (III)] are common electron acceptors for anaerobes in estuarine sediments. Here, we investigated anaerobic testosterone metabolism in anaerobic sediments collected from the estuary of Tamsui River, Taiwan. The anaerobic sediment samples were spiked with testosterone (1 mM) and individual electron acceptors (10 mM), including nitrate, Fe3+, and sulfate. The analysis of androgen metabolites indicated that testosterone biodegradation under denitrifying conditions proceeds through the 2,3-seco pathway, whereas testosterone biodegradation under iron-reducing conditions may proceed through an unidentified alternative pathway. Metagenomic analysis and PCR-based functional assays suggested that Thauera spp. were the major testosterone degraders in estuarine sediment samples incubated with testosterone and nitrate. Thauera sp. strain GDN1, a testosterone-degrading betaproteobacterium, was isolated from the denitrifying sediment sample. This strain tolerates a broad range of salinity (0–30 ppt). Although testosterone biodegradation did not occur under sulfate-reducing conditions, we observed the anaerobic biotransformation of testosterone to estrogens in some testosterone-spiked sediment samples. This is unprecedented since biotransformation of androgens to estrogens is known to occur only under oxic conditions. Our metagenomic analysis suggested that Clostridium spp. might play a role in this anaerobic biotransformation. These results expand our understanding of microbial metabolism of steroids under strictly anoxic conditions. PMID:28848528

Adaptations in AMPA receptor transmission in the nucleus accumbens contributing to incubation of cocaine craving.

PubMed

Loweth, Jessica A; Tseng, Kuei Y; Wolf, Marina E

2014-01-01

Cue-induced cocaine craving in rodents intensifies or "incubates" during the first months of withdrawal from long access cocaine self-administration. This incubation phenomenon is relevant to human users who achieve abstinence but exhibit persistent vulnerability to cue-induced relapse. It is well established that incubation of cocaine craving involves complex neuronal circuits. Here we will focus on neuroadaptations in the nucleus accumbens (NAc), a region of convergence for pathways that control cocaine seeking. A key adaptation is a delayed (~3-4 weeks) accumulation of Ca(2+)-permeable AMPAR receptors (CP-AMPARs) in synapses on medium spiny neurons (MSN) of the NAc. These CP-AMPARs mediate the expression of incubation after prolonged withdrawal, although different mechanisms must be responsible during the first weeks of withdrawal, prior to CP-AMPAR accumulation. The cascade of events leading to CP-AMPAR accumulation is still unclear. However, several candidate mechanisms have been identified. First, mGluR1 has been shown to negatively regulate CP-AMPAR levels in NAc synapses, and it is possible that a withdrawal-dependent decrease in this effect may help explain CP-AMPAR accumulation during incubation. Second, an increase in phosphorylation of GluA1 subunits (at the protein kinase A site) within extrasynaptic homomeric GluA1 receptors (CP-AMPARs) may promote their synaptic insertion and oppose their removal. Finally, elevation of brain-derived neurotrophic factor (BDNF) levels in the NAc may contribute to maintenance of incubation after months of withdrawal, although incubation-related increases in BDNF accumulation do not account for CP-AMPAR accumulation. Receptors and pathways that negatively regulate incubation, such as mGluR1, are promising targets for the development of therapeutic strategies to help recovering addicts maintain abstinence. This article is part of a Special Issue entitled 'NIDA 40th Anniversary Issue'. Copyright © 2013 Elsevier Ltd. All

Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks

DOE PAGES

Şimşir, Burcu; Yan, Jun; Im, Jeongdae; ...

2017-03-22

Contaminant discharge from fractured bedrock formations remains a remediation challenge. Here, we applied an integrated approach to assess the natural attenuation potential of sediment that forms the transition zone between upwelling groundwater from a chlorinated solvent-contaminated fractured bedrock aquifer and the receiving surface water. In situ measurements demonstrated that reductive dechlorination in the sediment attenuated chlorinated compounds before reaching the water column. Microcosms established with creek sediment or in situ incubated Bio-Sep beads degraded C 1-C 3 chlorinated solvents to less-chlorinated or innocuous products. Quantitative PCR and 16S rRNA gene amplicon sequencing revealed the abundance and spatial distribution of knownmore » dechlorinator biomarker genes within the creek sediment and demonstrated that multiple dechlorinator populations degrading chlorinatedC 1-C 3 alkanes and alkenes co-inhabit the sediment. Phylogenetic classification of bacterial and archaeal sequences indicated a relatively uniform distribution over spatial (300 m horizontally) scale, but Dehalococcoides and Dehalobacter were more abundant in deeper sediment, where 5.7 ± 0.4 × 10 5 and 5.4 ± 0.9 × 10 6 16S rRNA gene copies per g of sediment, respectively, were measured. The microbiological and hydrogeological characterization demonstrated that microbial processes at the fractured bedrock-sediment interface were crucial for preventing contaminants reaching the water column, emphasizing the relevance of this critical zone environment for contaminant attenuation.« less

Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Şimşir, Burcu; Yan, Jun; Im, Jeongdae

Contaminant discharge from fractured bedrock formations remains a remediation challenge. Here, we applied an integrated approach to assess the natural attenuation potential of sediment that forms the transition zone between upwelling groundwater from a chlorinated solvent-contaminated fractured bedrock aquifer and the receiving surface water. In situ measurements demonstrated that reductive dechlorination in the sediment attenuated chlorinated compounds before reaching the water column. Microcosms established with creek sediment or in situ incubated Bio-Sep beads degraded C 1-C 3 chlorinated solvents to less-chlorinated or innocuous products. Quantitative PCR and 16S rRNA gene amplicon sequencing revealed the abundance and spatial distribution of knownmore » dechlorinator biomarker genes within the creek sediment and demonstrated that multiple dechlorinator populations degrading chlorinatedC 1-C 3 alkanes and alkenes co-inhabit the sediment. Phylogenetic classification of bacterial and archaeal sequences indicated a relatively uniform distribution over spatial (300 m horizontally) scale, but Dehalococcoides and Dehalobacter were more abundant in deeper sediment, where 5.7 ± 0.4 × 10 5 and 5.4 ± 0.9 × 10 6 16S rRNA gene copies per g of sediment, respectively, were measured. The microbiological and hydrogeological characterization demonstrated that microbial processes at the fractured bedrock-sediment interface were crucial for preventing contaminants reaching the water column, emphasizing the relevance of this critical zone environment for contaminant attenuation.« less

Incubator temperature control: effects on the very low birthweight infant.

PubMed Central

Ducker, D A; Lyon, A J; Ross Russell, R; Bass, C A; McIntosh, N

1985-01-01

We studied temperature stability in 22 infants of birthweight less than 1500 g in the first four days of life. Infants were nursed in incubators using either air mode control or skin temperature servo control. Data were collected continuously using a computer linked monitoring system. Skin temperature control resulted in a less stable thermal environment than air mode control. Increased thermal stability in the incubator on air mode control may well be beneficial, particularly to sick, very low birthweight infants. PMID:4062342

A comparison of the light-reduction capacity of commonly used incubator covers.

PubMed

Lee, Yi-Hui; Malakooti, Nima; Lotas, Marilyn

2005-01-01

The use of incubator covers to enhance preterm infants' rest and recovery is common in the NICU. However, the kinds of covers used vary extensively among and within nurseries. Few data exist on the effectiveness of different types of covers in reducing light levels to the infant. This study compared several types of commonly used incubator covers as to efficacy of light reduction. A descriptive, comparative design was used in this study. Twenty-three incubator covers were tested, including professional, receiving blanket, hand-crocheted, three-layer quilt, and flannel. The percentage of light level reduction of different incubator covers under various ambient light level settings. The amount of light reduction provided by incubator covers varies depending on type of fabric as well as percentage of incubator surface shielded by the cover. Dark-colored covers provided greater light reduction than bright/light-colored covers when covers identical in fabric type were compared. The light-reduction efficiency of the covers varied depending on the level of ambient light. Covers provided less light reduction in higher ambient light levels.

Incubation temperature modifies neonatal thermoregulation in the lizard Anolis carolinensis.

PubMed

Goodman, Rachel M; Walguarnery, Justin W

2007-08-01

The thermal environment experienced during embryonic development can profoundly affect the phenotype, and potentially the fitness, of ectothermic animals. We examined the effect of incubation temperature on the thermal preferences of juveniles in the oviparous lizard, Anolis carolinensis. Temperature preference trials were conducted in a laboratory thermal gradient within 48 hr of hatching and after 22-27 days of maintenance in a common laboratory environment. Incubation temperature had a significant effect on the upper limit of the interquartile range (IQR) of temperatures selected by A. carolinensis within the first 2 days after hatching. Between the first and second trials, the IQR of selected temperatures decreased significantly and both the lower limit of the IQR and the median selected temperature increased significantly. This, along with a significant incubation temperature by time interaction in the upper limit of the IQR, resulted in a pattern of convergence in thermoregulation among treatment groups. The initial differences in selected temperatures, as well as the shift in selected temperatures between first and second trials, demonstrate plasticity in temperature selection. As a previous study failed to find environmentally induced plasticity in temperature selection in adult A. carolinensis, this study suggests that this type of plasticity is exclusive to the period of neonatal development. (c) 2007 Wiley-Liss, Inc.

Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal potomac river.

PubMed

Lovley, D R; Phillips, E J

1986-10-01

The distribution of Fe(III), its availability for microbial reduction, and factors controlling Fe(III) availability were investigated in sediments from a freshwater site in the Potomac River Estuary. Fe(III) reduction in sediments incubated under anaerobic conditions and depth profiles of oxalate-extractable Fe(III) indicated that Fe(III) reduction was limited to depths of 4 cm or less, with the most intense Fe(III) reduction in the top 1 cm. In incubations of the upper 4 cm of the sediments, Fe(III) reduction was as important as methane production as a pathway for anaerobic electron flow because of the high rates of Fe(III) reduction in the 0- to 0.5-cm interval. Most of the oxalate-extractable Fe(III) in the sediments was not reduced and persisted to a depth of at least 20 cm. The incomplete reduction was not the result of a lack of suitable electron donors. The oxalate-extractable Fe(III) that was preserved in the sediments was considered to be in a form other than amorphous Fe(III) oxyhydroxide, since synthetic amorphous Fe(III) oxyhydroxide, amorphous Fe(III) oxyhydroxide adsorbed onto clay, and amorphous Fe(III) oxyhydroxide saturated with adsorbed phosphate or fulvic acids were all readily reduced. Fe(3)O(4) and the mixed Fe(III)-Fe(II) compound(s) that were produced during the reduction of amorphous Fe(III) oxyhydroxide in an enrichment culture were oxalate extractable but were not reduced, suggesting that mixed Fe(III)-Fe(II) compounds might account for the persistence of oxalate-extractable Fe(III) in the sediments. The availability of microbially reducible Fe(III) in surficial sediments demonstrates that microbial Fe(III) reduction can be important to organic matter decomposition and iron geochemistry. However, the overall extent of microbial Fe(III) reduction is governed by the inability of microorganisms to reduce most of the Fe(III) in the sediment.

Potential for 4-n-nonylphenol biodegradation in stream sediments

USGS Publications Warehouse

Bradley, P.M.; Barber, L.B.; Kolpin, D.W.; McMahon, P.B.; Chapelle, F.H.

2008-01-01

The potential for in situ biodegradation of 4-nonylphenol (4-NP) was investigated in three hydrologically distinct streams impacted by wastewater treatment plants (WWTPs) in the United States. Microcosms were prepared with sediments from each site and amended with [U-ring-14C]4-n-nonylphenol (4-n-NP) as a model test substrate. Microcosms prepared with sediment collected upstream of the WWTP outfalls and incubated under oxic conditions showed rapid and complete mineralization of [U-ring-14C]4- n-NP to 14CO2 in all three systems. In contrast, no mineralization of [U-ring-14C]4-n-NP was observed in these sediments under anoxic (methanogenic) conditions. The initial linear rate of [U-ring-14C]4-n-NP mineralization in sediments from upstream and downstream of the respective WWTP outfalls was inversely correlated with the biochemical oxygen demand (BOD) of the streambed sediments. These results suggest that the net supply of dissolved oxygen to streambed sediments is a key determinant of the rate and extent of 4-NP biodegradation in stream systems. In the stream systems considered by the present study, dissolved oxygen concentrations in the overlying water column (8–10 mg/L) and in the bed sediment pore water (1–3 mg/L at a depth of 10 cm below the sediment–water interface) were consistent with active in situ 4-NP biodegradation. These results suggest WWTP procedures that maximize the delivery of dissolved oxygen while minimizing the release of BOD to stream receptors favor efficient biodegradation of 4-NP contaminants in wastewater-impacted stream environments.

National Security Technology Incubator Evaluation Process

DOE Office of Scientific and Technical Information (OSTI.GOV)

None, None

This report describes the process by which the National Security Technology Incubator (NSTI) will be evaluated. The technology incubator is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes a brief description of the components, steps, and measures of the proposed evaluation process. The purpose of the NSPP is to promote national security technologies through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with national security technology applications by nurturing them through critical stages ofmore » early development. An effective evaluation process of the NSTI is an important step as it can provide qualitative and quantitative information on incubator performance over a given period. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety and security. The mission of the NSTI is to identify, incubate, and accelerate technologies with national security applications at various stages of development by providing hands-on mentoring and business assistance to small businesses and emerging or growing companies. To achieve success for both incubator businesses and the NSTI program, an evaluation process is essential to effectively measure results and implement corrective processes in the incubation design if needed. The evaluation process design will collect and analyze qualitative and quantitative data through performance evaluation system.« less

The role of C:N:P stoichiometry in affecting denitrification in sediments from agricultural surface and tile-water wetlands.

PubMed

Grebliunas, Brian D; Perry, William L

2016-01-01

Nutrient stoichiometry within a wetland is affected by the surrounding land use, and may play a significant role in the removal of nitrate (NO3-N). Tile-drained, agricultural watersheds experience high seasonal inputs of NO3-N, but low phosphorus (PO4-P) and dissolved organic carbon (DOC) loads relative to surface water dominated systems. This difference may present stoichiometric conditions that limit denitrification within receiving waterways. We investigated how C:N:P ratios affected denitrification rates of sediments from tile-drained mitigation wetlands incubated for: 0, 5, 10, and 20 days. We then tested whether denitrification rates of sediments from surface-water and tile-drained wetlands responded differently to C:N ratios of 2:1 versus 4:1. Ratios of C:N:P (P < 0.05) and incubation length (P < 0.05) had a significant effect on denitrification in tile-drained wetland sediments. Carbon limitation of denitrification became evident at elevated NO3-N concentrations (20 mg L(-1)). Denitrification measured from tile water and surface water wetland sediments increased significantly (P < 0.05) at the 2:1 and 4:1 C:N treatments. The results from both experiments suggest wetland sediments provide a limiting pool of labile DOC to maintain prolonged NO3-N removal. Also, DOC limitation became more evident at elevated NO3-N concentrations (20 mg L(-1)). Irrespective of NO3-N concentrations, P did not limit denitrification rates. In addition to wetting period, residence time, and maintenance of anaerobic conditions, the availability of labile DOC is playing an important limiting role in sediment denitrification within mitigation wetlands.

Sex effects in mouse prion disease incubation time.

PubMed

Akhtar, Shaheen; Wenborn, Adam; Brandner, Sebastian; Collinge, John; Lloyd, Sarah E

2011-01-01

Prion disease incubation time in mice is determined by many factors including PrP expression level, Prnp alleles, genetic background, prion strain and route of inoculation. Sex differences have been described in age of onset for vCJD and in disease duration for both vCJD and sporadic CJD and have also been shown in experimental models. The sex effects reported for mouse incubation times are often contradictory and detail only one strain of mice or prions, resulting in broad generalisations and a confusing picture. To clarify the effect of sex on prion disease incubation time in mice we have compared male and female transmission data from twelve different inbred lines of mice inoculated with at least two prion strains, representing both mouse-adapted scrapie and BSE. Our data show that sex can have a highly significant difference on incubation time. However, this is limited to particular mouse and prion strain combinations. No sex differences were seen in endogenous PrP(C) levels nor in the neuropathological markers of prion disease: PrP(Sc) distribution, spongiosis, neuronal loss and gliosis. These data suggest that when comparing incubation times between experimental groups, such as testing the effects of modifier genes or therapeutics, single sex groups should be used.

Bubbles in Sediments

DTIC Science & Technology

1999-09-30

saturated poroelastic medium. The transition matrix scattering formalism was used to develop the scattered acoustic field(s) such that appropriate...sediment increases from a fluid model (simplest) to a fluid-saturated poroelastic model (most complex). Laboratory experiments in carefully quantified...of a linear acoustic field from a bubble, collection of bubbles, or other targets embedded in a fluid-saturated sediment are not well known. This

Study of extremely low frequency electromagnetic fields in infant incubators.

PubMed

Cermáková, Eleonora

2003-01-01

The aim of the work was to present the results of measurements of extremely low frequency electromagnetic fields (ELF EMF), namely the magnetic flux density, inside infant incubators, and to compare these results with the data published by other authors who point out to a possible association between leukemia or other diseases observed in newborns kept in incubators after the birth and the ELF EMF exposure in the incubator. The measured magnetic flux densities were compared with the reference values for this frequency range indicated in the European Union (EU) recommendations. The repeated measurements in incubators were made with a calibrated magnetometer EFA 300 in the frequency range of 5-30 kHz. Effective values of magnetic flux densities of ELF EMF were determined taking account of the reference values. The results of many repeated measurements showing the values of magnetic flux density in modern incubators with plastic supporting frame, were compared with those obtained in old type incubators with iron skeleton. A power frequency of 50 Hz was detected in the incubator and the ELF EMF values were by over two orders lower than the EU reference values. The paper emphasizes the need to take a special care of newborns kept in incubators even if only the sub-reference values are detected. The EU reference values are intended for the adult human population. A baby in an incubator has much smaller dimensions, higher electric conductivity and maybe trigger another mechanism of response to ELF EMF than that indicated in this paper.

Summary of water- and sediment-quality data for Anacostia River well sites sampled in July-August 2002

USGS Publications Warehouse

Miller, Cherie V.; Klohe, Cheryl A.

2003-01-01

This data report is a summary of chemical analyses conducted by the U.S. Geological Survey on ground water and sediment in the tidal Anacostia River watershed, Washington, D.C. during July-August 2002. Cores were drilled and wells were established at three shoreline sites: two wells at the New York Avenue overpass, two wells at the Kenilworth Aquatic Gardens, and one well at Anacostia Park. Additionally, two cores were collected by hoverprobe in mudflats on the river: one by Benning Road and one in the mouth of Beaverdam Creek. Chemical analyses included volatile organic compounds, semi-volatile organic compounds or polyaromatic hydrocarbons, organochlorine pesticides, aroclors and total polychlorinated biphenyls, metals, nutrients, biochemical and chemical oxygen demands, total phenols, total cyanide, oil and grease, and total suspended and dissolved solids in aqueous phases.

The Abundance and Activity of Nitrate-Reducing Microbial Populations in Estuarine Sediments

NASA Astrophysics Data System (ADS)

Cardarelli, E.; Francis, C. A.

2014-12-01

Estuaries are productive ecosystems that ameliorate nutrient and metal contaminants from surficial water supplies. At the intersection of terrestrial and aquatic environments, estuarine sediments host major microbially-mediated geochemical transformations. These include denitrification (the conversion of nitrate to nitrous oxide and/or dinitrogen) and dissimilatory nitrate reduction to ammonium (DNRA). Denitrification has historically been seen as the predominant nitrate attenuation process and functions as an effective sink for nitrate. DNRA has previously been believed to be a minor nitrate reduction process and transforms nitrate within the ecosystem to ammonium, a more biologically available N species. Recent studies have compared the two processes in coastal environments and determined fluctuating environmental conditions may suppress denitrification, supporting an increased role for DNRA in the N cycle. Nitrate availability and salinity are factors thought to influence the membership of the microbial communities present, and the nitrate reduction process that predominates. The aim of this study is to investigate how nitrate concentration and salinity alter the transcript abundances of N cycling functional gene markers for denitrification (nirK, nirS) and DNRA (nrfA) in estuarine sediments at the mouth of the hypernutrified Old Salinas River, CA. Short-term whole core incubations amended with artificial freshwater/artificial seawater (2 psu, 35 psu) and with varying NO3- concentrations (200mM, 2000mM) were conducted to assess the activity as well as the abundance of the nitrate-reducing microbial populations present. Gene expression of nirK, nirS, and nrfA at the conclusion of the incubations was quantified using reverse transcription quantitative polymerase chain reaction (RT-qPCR). High abundances of nirK, nirS, and nrfA under particular conditions coupled with the resulting geochemical data ultimately provides insight onto how the aforementioned factors

Incubating rainbow trout in soft water increased their later sensitivity to cadmium and zinc

USGS Publications Warehouse

Mebane, Christopher A.; Hennessy, Daniel P.; Dillon, Frank S.

2010-01-01

Water hardness is well known to affect the toxicity of some metals; however, reports on the influence of hardness during incubation or acclimation on later toxicity to metals have been conflicting. We incubated rainbow trout (Oncorhynchus mykiss) near the confluence of two streams, one with soft water and one with very-soft water (average incubation hardnesses of about 21 and 11 mg/L as CaCO3, respectively). After developing to the swim-up stage, the fish were exposed for 96-h to a mixture of cadmium (Cd) and zinc (Zn) in water with a hardness of 27 mg/L as CaCO3. The fish incubated in the higher hardness water were about two times more resistant than the fish incubated in the extremely soft water. This difference was similar or greater than the difference that would have been predicted by criteria hardness equations had the fish been tested in the different acclimation waters. We think it is plausible that the energy demands for fish to maintain homeostasis in the lower hardness water make the fish more sensitive to metals that inhibit ionoregulation such as Cd and Zn. We suggest that if important decisions were to be based upon test results, assumptions of adequate hardness acclimation should be carefully considered and short acclimation periods avoided. If practical, incubating rainbow trout in the control waters to be tested may reduce uncertainties in the possible influences of differing rearing water hardness on the test results.

Adaptations in AMPA receptor transmission in the nucleus accumbens contributing to incubation of cocaine craving

PubMed Central

Loweth, Jessica A.; Tseng, Kuei Y.; Wolf, Marina E.

2013-01-01

Cue-induced cocaine craving in rodents intensifies or “incubates” during the first months of withdrawal from long access cocaine self-administration. This incubation phenomenon is relevant to human users who achieve abstinence but exhibit persistent vulnerability to cue-induced relapse. It is well established that incubation of cocaine craving involves complex neuronal circuits. Here we will focus on neuroadaptations in the nucleus accumbens (NAc), a region of convergence for pathways that control cocaine seeking. A key adaptation is a delayed (~3–4 weeks) accumulation of Ca2+-permeable AMPAR receptors (CP-AMPARs) in synapses on medium spiny neurons (MSN) of the NAc. These CP-AMPARs mediate the expression of incubation after prolonged withdrawal, although different mechanisms must be responsible during the first weeks of withdrawal, prior to CP-AMPAR accumulation. The cascade of events leading to CP-AMPAR accumulation is still unclear. However, several candidate mechanisms have been identified. First, mGluR1 has been shown to negatively regulate CP-AMPAR levels in NAc synapses, and it is possible that a withdrawal-dependent decrease in this effect may help explain CP-AMPAR accumulation during incubation. Second, an increase in phosphorylation of GluA1 subunits (at the protein kinase A site) within extrasynaptic homomeric GluA1 receptors (CP-AMPARs) may promote their synaptic insertion and oppose their removal. Finally, elevation of brain-derived neurotrophic factor (BDNF) levels in the NAc may contribute to maintenance of incubation after months of withdrawal, although incubation-related increases in BDNF accumulation do not account for CP-AMPAR accumulation. Receptors and pathways that negatively regulate incubation, such as mGluR1, are promising targets for the development of therapeutic strategies to help recovering addicts maintain abstinence. PMID:23727437

Trace metals and persistent organic pollutants in sediments from river-reservoir systems in Democratic Republic of Congo (DRC): Spatial distribution and potential ecotoxicological effects.

PubMed

Mwanamoki, Paola M; Devarajan, Naresh; Thevenon, Florian; Birane, Niane; de Alencastro, Luiz Felippe; Grandjean, Dominique; Mpiana, Pius T; Prabakar, Kandasamy; Mubedi, Josué I; Kabele, Christophe G; Wildi, Walter; Poté, John

2014-09-01

This paper discusses the occurrence and spatial distribution of metals and persistent organic pollutants (POPs: including organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), Polybrominated diphenyl ethers (PBDEs), and polycyclic aromatic hydrocarbons (PAHs) in sediments from a river-reservoir system. Surface sediments were sampled from thirteen sites of the Congo River Basin and Lake Ma Vallée, both situated in the vicinity of the capital city Kinshasa (Congo Democratic Republic). Sediment qualities were evaluated using toxicity test based on exposing Ostracods to the sediment samples. The highest metal concentrations were observed in sediments subjected to anthropogenic influences, urban runoff and domestic and industrial wastewaters, discharge into the Congo River basin. Ostracods exposed to the sediments resulted in 100% mortality rates after 6d of incubation, indicating the ultimate toxicity of these sediments as well as potential environmental risks. The POPs and PAHs levels in all sediment samples were low, with maximum concentration found in the sediments (area of pool Malebo): OCP value ranged from 0.02 to 2.50 with ∑OCPs: 3.3μgkg(-1); PCB ranged from 0.07 to 0.99 with Total PCBs (∑7×4.3): 15.31μgkg(-1); PAH value ranged from 0.12 to 9.39 with ∑PAHs: 63.89μgkg(-1). Our results indicate that the deterioration of urban river-reservoir water quality result mainly from urban stormwater runoff, untreated industrial effluents which discharge into the river-reservoirs, human activities and uncontrolled urbanization. This study represents useful tools incorporated to evaluate sediment quality in river-reservoir systems which can be applied to similar aquatic environments. Copyright © 2014 Elsevier Ltd. All rights reserved.

Considerations for conducting incubations to study the mechanisms of As release in reducing groundwater aquifers

PubMed Central

Radloff, Kathleen A.; Manning, Anya R.; Mailloux, Brian; Zheng, Yan; Rahman, M. Moshiur; Huq, M. Rezaul; Ahmed, Kazi M.; van Geen, Alexander

2008-01-01

Microbial Fe reduction is widely believed to be the primary mechanism of As release from aquifer sands in Bangladesh, but alternative explanations have been proposed. Long-term incubation studies using natural aquifer material are one way to address such divergent views. This study addresses two issues related to this approach: (1) the need for suitable abiotic controls and (2) the spatial variability of the composition of aquifer sands. Four sterilization techniques were examined using orange-colored Pleistocene sediment from Bangladesh and artificial groundwater over 8 months. Acetate (10 mM) was added to sacrificial vials before sterilization using either (1) 25 kGy of gamma irradiation, (2) three 1-h autoclave cycles, (3) a single addition of an antibiotic mixture at 1x or (4) 10x the typical dose, and (5) a 10 mM addition of azide. The effectiveness of sterilization was evaluated using two indicators of microbial Fe reduction, changes in diffuse spectral reflectance and leachable Fe(II)/Fe ratios, as well as changes in P-extractable As concentrations in the solid phase. A low dose of antibiotics was ineffective after 70 days, whereas autoclaving significantly altered groundwater composition. Gamma irradiation, a high dose of antibiotics, and azide were effective for the duration of the experiment. PMID:19884962

Thermal management in closed incubators: New software for assessing the impact of humidity on the optimal incubator air temperature.

PubMed

Delanaud, Stéphane; Decima, Pauline; Pelletier, Amandine; Libert, Jean-Pierre; Durand, Estelle; Stephan-Blanchard, Erwan; Bach, Véronique; Tourneux, Pierre

2017-08-01

Low-birth-weight (LBW) neonates are nursed in closed incubators to prevent transcutaneous water loss. The RH's impact on the optimal incubator air temperature setting has not been studied. On the basis of a clinical cohort study, we modelled all the ambient parameters influencing body heat losses and gains. The algorithm quantifies the change in RH on the air temperature, to maintain optimal thermal conditions in the incubator. Twenty-three neonates (gestational age (GA): 30.0 [28.9-31.6] weeks) were included. A 20% increase and a 20% decrease in the RH induced a change in air temperature of between -1.51 and +1.85°C for a simulated 650g neonate (GA: 26 weeks), between -1.66 and +1.87°C for a 1000g neonate (GA: 31 weeks), and between -1.77 and +1.97°C for a 2000g neonate (GA: 33 weeks) (p<0.001). According to regression analyses, the optimal incubator air temperature=a+b relative humidity +c age +d weight (p<0.001). We have developed new mathematical equations for calculating the optimal temperature for the incubator air as a function of the latter's relative humidity. The software constitutes a decision support tool for improving patient care in routine clinical practice. Copyright © 2017 IPEM. Published by Elsevier Ltd. All rights reserved.

Evaluation of the horizontal-to-vertical spectral ratio (HVSR) seismic method to determine sediment thickness in the vicinity of the South Well Field, Franklin County, OH

USGS Publications Warehouse

Haefner, Ralph J.; Sheets, Rodney A.; Andrews, Robert E.

2011-01-01

The horizontal-to-vertical spectral ratio (HVSR) seismic method involves analyzing measurements of ambient seismic noise in three dimensions to determine the fundamental site resonance frequency. Resonance is excited by the interaction of surface waves (Rayleigh and Love) and body waves (vertically incident shear) with the high-contrast aconstic impedance boundary at the bedrock-sediment interface. Measurements were made to determine the method's utility for estimating thickness of unconsolidated glacial sediments at 18 locations at the South Well Field, Franklin County, OH, and at six locations in Pickaway County where sediment thickness was already known. Measurements also were made near a high-capacity production well (with pumping on and off) and near a highway and a limestone quarry to examine changes in resonance frequencies over a 20-hour period. Although the regression relation for resonance frequency and sediment thickness had a relatively low [r.sup.2] (0.322), estimates of sediment thickness were, on average, within 14 percent of known thicknesses. Resonance frequencies for pumping on and pumping off were identical, although the amplitude of the peak was nearly double under pumping conditions. Resonance frequency for the 20-hour period did not change, but the amplitude of the peak changed considerably, with a maximum amplitude in the early afternoon and minimum in the very early morning hours. Clay layers within unconsolidated sediments may influence resonance frequency and the resulting regression equation, resulting in underestimation of sediment thickness; however, despite this and other complicating factors, hydrogeologists should consider this method when thickness data are needed for unconsolidated sediments.

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria

PubMed Central

Vandieken, Verona; Pester, Michael; Finke, Niko; Hyun, Jung-Ho; Friedrich, Michael W; Loy, Alexander; Thamdrup, Bo

2012-01-01

Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 106 acetate-utilizing manganese-reducing cells cm−3 in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments. PMID:22572639

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria.

PubMed

Vandieken, Verona; Pester, Michael; Finke, Niko; Hyun, Jung-Ho; Friedrich, Michael W; Loy, Alexander; Thamdrup, Bo

2012-11-01

Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 10(6) acetate-utilizing manganese-reducing cells cm(-3) in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments.

Aerobic and anaerobic degradation and mineralization of 14C-chitin by water column and sediment inocula of the York River estuary, Virginia.

PubMed Central

Boyer, J N

1994-01-01

Potential rates of chitin degradation (Cd) and mineralization (Cm) by estuarine water and sediment bacteria were measured as a function of inoculum source, temperature, and oxygen condition. In the water column inoculum, 88 to 93% of the particulate chitin was mineralized to CO2 with no apparent lag between degradation and mineralization. No measurable dissolved pool of radiolabel was found in the water column. For the sediment inocula, 70 to 90% of the chitin was degraded while only 55 to 65% was mineralized to CO2. 14C label recoveries in the dissolved pool were 19 to 21% for sand, 17 to 24% in aerobic mud, and 12 to 21% for the anaerobic mud. This uncoupling between degradation and mineralization occurred in all sediment inocula. More than 98% of the initial 14C-chitin was recovered in the three measured fractions. The highest Cd and Cm values, 30 and 27% day-1, occurred in the water column inoculum at 25 degrees C. The lowest Cd and Cm values were found in the aerobic and anaerobic mud inocula incubated at 15 degrees C. Significant differences in Cd and Cm values among water column and sediment inocula as well as between temperature treatments were evident. An increased incubation temperature resulted in shorter lag times before the onset of chitinoclastic bacterial growth, degradation, and mineralization and resulted in apparent Q10 values of 1.1 for water and 1.3 to 2.1 for sediment inocula. It is clear that chitin degradation and mineralization occur rapidly in the estuary and that water column bacteria may be more important in this process than previously acknowledged. PMID:8117075

[Limnology of high mountain tropical lake, in Ecuador: characteristics of sediments and rate of sedimentation].

PubMed

Gunkel, Günter

2003-06-01

Equatorial high mountain lakes are a special type of lake occurring mainly in the South American Andes as well as in Central Africa and Asia. They occur at altitudes of a few thousand meters above sea level and are cold-water lakes (< 20 degrees C). Relatively little is known about them. A long-term limnological study was therefore undertaken at Lake San Pablo, Ecuador, to analyze the basic limnological processes of the lake, which has a tendency for eutrophication. Sediment quality of San Pablo Lake is given under consideration of horizontal and vertical distribution using sediment cores. Significance of sediments for eutrophication process of lakes is demonstrated using phosphorus concentration of sediments as well as the phosphorus retention capacity of the sediments by ratio Fe/P. Dating of the sediments is done using 137Cs and 210Pb, but the activity of 137Cs in the sediment was very low nearly at the detection level. Sedimentation rate is determined to be 3.5 mm/year and the sediment cores represent about 110 years. P concentration of the sediments is high (approximately 5 g/kg dry substance), and P retention capacity by Fe is insufficient (Fe/P = 4). The sediment quality did not change significantly during the past decades, and the trophic state of San Pablo Lake was already less or more eutrophic 110 years ago. The contamination of the lake sediments by heavy metals is insignificant.

Timing of spring wild turkey hunting in relation to nest incubation

USGS Publications Warehouse

Casalena, Mary Jo; Everett, Rex; Vreeland, Wendy C.; Gregg, Ian D.; Diefenbach, Duane R.

2016-01-01

State wildlife agencies are often requested to open spring wild turkey (Meleagris gallopavo; hereafter, turkey) hunting seasons earlier to increase hunter satisfaction by hunters hearing more gobbling male turkeys. Timing of spring turkey hunting season in several states, including Pennsylvania, has been established to open, on average, near median date of incubation initiation of turkey nests. This is believed to reduce illegal and undesired hen harvest and possibly nest abandonment, while maintaining hunter satisfaction of hearing male turkeys when most hens are incubating eggs. However, Pennsylvania’s spring season structure was established in 1968. Given earlier spring phenology, and potentially more variation in spring weather due to climate change, there is concern that timing of nest incubation for turkeys in Pennsylvania could be changing. Therefore, our objective was to determine if nest incubation and opening of spring turkey hunting in Pennsylvania have continued to coincide. We attached satellite transmitters to 254 female turkeys during 2010–2014 and estimated median incubation initiation date to be 2 May, which was 2 days earlier than median date during a statewide study during 1953–1963 and 9 days earlier than during a smaller scale study in south–central Pennsylvania during 2000–2001. However, incubation initiation varied greatly among years and individual hens during all 3 studies. During 4 of 5 years of our study, Pennsylvania’s spring season opened 3 to 8 days prior to median date of incubation initiation. Over the 5 years, estimated initiation of incubation for first nesting attempts, measured from earliest date of incubation initiation to latest, was >2 months and maximum proportion of hens beginning incubation at any one time differed by several days to >1 week. Consequently, in years of late incubation, a constant season opening date set near the long-term median date of incubation initiation exposes few additional hens to risk

Habitat quality of historic Snake River fall Chinook salmon spawning locations and implications for incubation survival: part 1, substrate quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hanrahan, Timothy P.; Geist, David R.; Arntzen, Evan V.

2005-07-01

We evaluated substrate quality at two historic fall Chinook salmon (Oncorhynchus tshawytscha) spawning sites in the Snake River, Idaho, USA. The primary objective of this evaluation was to measure sediment permeability within these areas to determine the potential quality of the habitat in the event that anadromous salmonids are reintroduced to the upper Snake River. Riverbed sediments within the two sites in the upper Snake River were sampled using freeze cores and hydraulic slug tests. Sediment grain size distributions at both sites were typical of gravel-bed rivers with the surface layer coarser than the underlying substrate, suggesting the riverbed surfacemore » was armored. Despite the armored nature of the bed, the size of the largest material present on the riverbed surface was well within the size limit of material capable of being excavated by spawning fall Chinook salmon. The percentage of fines was low, suggesting good quality substrate for incubating salmon embryos. Geometric mean particle sizes found in this study compared to a 55% to 80% survival to emergence based on literature values. Hydraulic slug tests showed moderate to high hydraulic conductivity and were comparable to values from current fall Chinook salmon spawning areas in the Hells Canyon Reach of the Snake River and the Hanford Reach of the Columbia River. Predicted estimates of mean egg survival at both sites (48% and 74%) equaled or exceeded estimates from fall Chinook salmon spawning areas in the Hells Canyon Reach and the Hanford Reach.« less

Targeting sediment management strategies using sediment quantification and fingerprinting methods

NASA Astrophysics Data System (ADS)

Sherriff, Sophie; Rowan, John; Fenton, Owen; Jordan, Phil; hUallacháin, Daire Ó.

2016-04-01

Cost-effective sediment management is required to reduce excessive delivery of fine sediment due to intensive land uses such as agriculture, resulting in the degradation of aquatic ecosystems. Prioritising measures to mitigate dominant sediment sources is, however, challenging, as sediment loss risk is spatially and temporally variable between and within catchments. Fluctuations in sediment supply from potential sources result from variations in land uses resulting in increased erodibility where ground cover is low (e.g., cultivated, poached and compacted soils), and physical catchment characteristics controlling hydrological connectivity and transport pathways (surface and/or sub-surface). Sediment fingerprinting is an evidence-based management tool to identify sources of in-stream sediments at the catchment scale. Potential sediment sources are related to a river sediment sample, comprising a mixture of source sediments, using natural physico-chemical characteristics (or 'tracers'), and contributions are statistically un-mixed. Suspended sediment data were collected over two years at the outlet of three intensive agricultural catchments (approximately 10 km2) in Ireland. Dominant catchment characteristics were grassland on poorly-drained soils, arable on well-drained soils and arable on moderately-drained soils. High-resolution (10-min) calibrated turbidity-based suspended sediment and discharge data were combined to quantify yield. In-stream sediment samples (for fingerprinting analysis) were collected at six to twelve week intervals, using time-integrated sediment samplers. Potential sources, including stream channel banks, ditches, arable and grassland field topsoils, damaged road verges and tracks were sampled, oven-dried (<40oC) and sieved (125 microns). Soil and sediment samples were analysed for mineral magnetics, geochemistry and radionuclide tracers, particle size distribution and soil organic carbon. Tracer data were corrected to account for particle

Complete Reductive Dehalogenation of Brominated Biphenyls by Anaerobic Microorganisms in Sediment

PubMed Central

Bedard, Donna L.; Van Dort, Heidi M.

1998-01-01

We sought to determine whether microorganisms from the polychlorinated biphenyl (PCB)-contaminated sediment in Woods Pond (Lenox, Mass.) could dehalogenate brominated biphenyls. The PCB dechlorination specificities for the microorganisms in this sediment have been well characterized. This allowed us to compare the dehalogenation specificities for brominated biphenyls and chlorinated biphenyls within a single sediment. Anaerobic sediment microcosms were incubated separately at 25°C with 16 different mono- to tetrabrominated biphenyls (350 μM) and disodium malate (10 mM). Samples were extracted and analyzed by gas chromatography with an electron capture detector and a mass spectrometer detector at various times for up to 54 weeks. All of the tested brominated biphenyls were dehalogenated. For most congeners, including 2,6-dibromobiphenyl (26-BB) and 24-25-BB, the dehalogenation began within 1 to 2 weeks. However, for 246-BB and 2-2-BB, debromination was first observed at 7 and 14 weeks, respectively. Most intermediate products did not persist, but when 2-2-BB was produced as a dehalogenation product, it persisted for at least 15 weeks before it was dehalogenated to 2-BB and then to biphenyl. The dehalogenation specificities for brominated and chlorinated biphenyls were similar: meta and para substituents were generally removed first, and ortho substituents were more recalcitrant. However, the brominated biphenyls were better dehalogenation substrates than the chlorinated biphenyls. All of the tested bromobiphenyls, including those with ortho and unflanked meta and para substituents, were ultimately dehalogenated to biphenyl, whereas their chlorinated counterparts either were not dehalogenation substrates or were only partially dehalogenated. Our data suggest that PCB-dechlorinating microorganisms may be able to dehalogenate brominated biphenyls and may exhibit a relaxed specificity for these substrates. PMID:16349530

Comparative clinical evaluation of a prototype non-electric transport incubator and an electrical infant incubator in a neonatal unit.

PubMed

Khodadadeh, Y; Nili, F; Nayeri, F; Wickramasinghe, Y

2001-09-01

A new non-electric transport incubator has been developed for transferring babies between health facilities in developing countries. The temperature performance of this prototype was compared with a commercial electric incubator. The warm-up time for the prototype was 51.8 min, compared with 48.1 min for the electric incubator. Forty-five non-distressed premature babies, aged 24-72 h, with a gestational age of less than 37 weeks, were continuously evaluated for a 2 h period. Twenty-five babies, with a mean weight of 2073 g (range 1500-2500 g), were studied in the prototype, and 20 babies, with a mean weight of 2076g (range 1550-2500 g), were studied in the electrical incubator. The rectal and abdominal skin temperature, heart rate, oxygen saturation and respiratory rate of the babies were recorded. The temperature, oxygen and humidity level of the canopy and the room temperature were also measured. The SaO2, heart rate and respiratory rate were within the normal range (in the prototype: 96.5%, 130.5 beats min(-1) and 43 breaths min(-1), respectively; and, in the electric incubator: 96.5%, 128.5 beats min(-1) and 40 breaths min(-1), respectively). No evidence of carbon dioxide narcosis, hypoxia, acidosis or adverse thermoregulatory behaviour were observed in the two groups. The mean rectal temperature for both groups was within the range 36.5 degrees C-37.5 degrees C. There was no significant difference between the measurements of the two groups. The level of oxygen inside the canopy was 21%, and no decrease was observed. The new nonelectric transport incubator confirmed its safety and efficiency in providing a warm environment for non-distressed premature babies over a 2 h period.

National Security Technology Incubation Strategic Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

None, None

This strategic plan contains information on the vision, mission, business and technology environment, goals, objectives, and incubation process of the National Security Technology Incubation Program (NSTI) at Arrowhead Center. The development of the NSTI is a key goal of the National Security Preparedness Project (NSPP). Objectives to achieve this goal include developing incubator plans (strategic, business, action, and operations), creating an incubator environment, creating a support and mentor network for companies in the incubator program, attracting security technology businesses to the region, encouraging existing business to expand, initiating business start-ups, evaluating products and processes of the incubator program, and achievingmore » sustainability of the incubator program. With the events of 9/11, the global community faces ever increasing and emerging threats from hostile groups determined to rule by terror. According to the National Nuclear Security Administration (NNSA) Strategic Plan, the United States must be able to quickly respond and adapt to unanticipated situations as they relate to protection of our homeland and national security. Technology plays a key role in a strong national security position, and the private business community, along with the national laboratories, academia, defense and homeland security organizations, provide this technology. Fostering innovative ideas, translated into relevant technologies answering the needs of NNSA, is the purpose of the NSTI. Arrowhead Center of New Mexico State University is the operator and manager of the NSTI. To develop the NSTI, Arrowhead Center must meet the planning, development, execution, evaluation, and sustainability activities for the program and identify and incubate new technologies to assist the NNSA in meeting its mission and goals. Technology alone does not give a competitive advantage to the country, but the creativity and speed with which it is employed does. For a company

An MR-compatible neonatal incubator.

PubMed

Paley, M N J; Hart, A R; Lait, M; Griffiths, P D

2012-07-01

To develop a neonatal MR-compatible incubator for transporting babies between a neonatal intensive care unit and an MRI unit that is within the same hospital but geographically separate. The system was strapped to a standard MR-compatible patient trolley, which provides space for resuscitation outside the incubator. A constant-temperature exothermic heat pad was used to maintain temperature together with a logging fluoro-optic temperature monitor and alarm system. The system has been designed to accommodate standard knee-sized coils from the major MR manufacturers. The original incubator was constructed from carbon fibre, but this required modification to prevent radiofrequency shading artefacts due to the conducting properties of the carbon fibre. A high-tensile polyester material was used, which combined light weight with high impact strength. The system could be moved onto the patient bed with the coils and infant in place by one technologist. Studies in eight neonatal patients produced high quality 1.5 T MR images with low motion artefacts. The incubator should also be compatible with imaging in 3 T MR systems, although further work is required to establish this. Images were acquired using both rapid and high-resolution sequences, including three-dimensional volumes, proton spectra and diffusion weighting. The incubator provides a safe, quiet environment for neonates during transport and imaging, at low cost.

An MR-compatible neonatal incubator

PubMed Central

Paley, M N J; Hart, A R; Lait, M; Griffiths, P D

2012-01-01

Objectives To develop a neonatal MR-compatible incubator for transporting babies between a neonatal intensive care unit and an MRI unit that is within the same hospital but geographically separate. Methods The system was strapped to a standard MR-compatible patient trolley, which provides space for resuscitation outside the incubator. A constant-temperature exothermic heat pad was used to maintain temperature together with a logging fluoro-optic temperature monitor and alarm system. The system has been designed to accommodate standard knee-sized coils from the major MR manufacturers. The original incubator was constructed from carbon fibre, but this required modification to prevent radiofrequency shading artefacts due to the conducting properties of the carbon fibre. A high-tensile polyester material was used, which combined light weight with high impact strength. The system could be moved onto the patient bed with the coils and infant in place by one technologist. Results Studies in eight neonatal patients produced high quality 1.5 T MR images with low motion artefacts. The incubator should also be compatible with imaging in 3 T MR systems, although further work is required to establish this. Images were acquired using both rapid and high-resolution sequences, including three-dimensional volumes, proton spectra and diffusion weighting. Conclusion The incubator provides a safe, quiet environment for neonates during transport and imaging, at low cost. PMID:22167517

21 CFR 880.5400 - Neonatal incubator.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Neonatal incubator. 880.5400 Section 880.5400 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL... § 880.5400 Neonatal incubator. (a) Identification. A neonatal incubator is a device consisting of a...

In situ thermal conductivity of gas-hydrate-bearing sediments of the Mallik 5L-38 well

NASA Astrophysics Data System (ADS)

Henninges, J.; Huenges, E.; Burkhardt, H.

2005-11-01

Detailed knowledge about thermal properties of rocks containing gas hydrate is required in order to quantify processes involving gas hydrate formation and decomposition in nature. In the framework of the Mallik 2002 program, three wells penetrating a continental gas hydrate occurrence under permafrost were successfully equipped with permanent fiber-optic distributed temperature sensing cables. Temperature data were collected over a 21-month period after completing the wells. Thermal conductivity profiles were calculated from the geothermal data as well as from a petrophysical model derived from the available logging data and application of mixing law models. Results indicate that thermal conductivity variations are mainly lithologically controlled with a minor influence from hydrate saturation. Average thermal conductivity values of the hydrate-bearing sediments range between 2.35 and 2.77 W m-1 K-1. Maximum gas hydrate saturations can reach up to about 90% at an average porosity of 0.3.

Managing a Small Business Incubator.

ERIC Educational Resources Information Center

Kirchner, Charles, Ed.

An increasingly popular economic development tool to improve the success rate of new firms is the small business incubator. These are buildings in which a number of new or growing businesses can locate and operate at a much lower overhead cost than in conventional space where market rates prevail. Incubator facilities are characterized by access…

Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment

PubMed Central

Marzocchi, Ugo; Trojan, Daniela; Larsen, Steffen; Louise Meyer, Rikke; Peter Revsbech, Niels; Schramm, Andreas; Peter Nielsen, Lars; Risgaard-Petersen, Nils

2014-01-01

Filamentous bacteria of the Desulfobulbaceae family can conduct electrons over centimeter-long distances thereby coupling oxygen reduction at the surface of marine sediment to sulfide oxidation in deeper anoxic layers. The ability of these cable bacteria to use alternative electron acceptors is currently unknown. Here we show that these organisms can use also nitrate or nitrite as an electron acceptor thereby coupling the reduction of nitrate to distant oxidation of sulfide. Sulfidic marine sediment was incubated with overlying nitrate-amended anoxic seawater. Within 2 months, electric coupling of spatially segregated nitrate reduction and sulfide oxidation was evident from: (1) the formation of a 4–6-mm-deep zone separating sulfide oxidation from the associated nitrate reduction, and (2) the presence of pH signatures consistent with proton consumption by cathodic nitrate reduction, and proton production by anodic sulfide oxidation. Filamentous Desulfobulbaceae with the longitudinal structures characteristic of cable bacteria were detected in anoxic, nitrate-amended incubations but not in anoxic, nitrate-free controls. Nitrate reduction by cable bacteria using long-distance electron transport to get privileged access to distant electron donors is a hitherto unknown mechanism in nitrogen and sulfur transformations, and the quantitative importance for elements cycling remains to be addressed. PMID:24577351

Gross Nitrogen Mineralization in Surface Sediments of the Yangtze Estuary

PubMed Central

Liu, Min; Li, Xiaofei; Yin, Guoyu; Zheng, Yanling; Deng, Fengyu

2016-01-01

Nitrogen mineralization is a key biogeochemical process transforming organic nitrogen to inorganic nitrogen in estuarine and coastal sediments. Although sedimentary nitrogen mineralization is an important internal driver for aquatic eutrophication, few studies have investigated sedimentary nitrogen mineralization in these environments. Sediment-slurry incubation experiments combined with 15N isotope dilution technique were conducted to quantify the potential rates of nitrogen mineralization in surface sediments of the Yangtze Estuary. The gross nitrogen mineralization (GNM) rates ranged from 0.02 to 5.13 mg N kg-1 d-1 in surface sediments of the study area. The GNM rates were generally higher in summer than in winter, and the relative high rates were detected mainly at sites near the north branch and frontal edge of this estuary. The spatial and temporal distributions of GNM rates were observed to depend largely on temperature, salinity, sedimentary organic carbon and nitrogen contents, and extracellular enzyme (urease and L-glutaminase) activities. The total mineralized nitrogen in the sediments of the Yangtze Estuary was estimated to be about 6.17 × 105 t N yr-1, and approximately 37% of it was retained in the estuary. Assuming the retained mineralized nitrogen is totally released from the sediments into the water column, which contributed 12–15% of total dissolved inorganic nitrogen (DIN) sources in this study area. This result indicated that the mineralization process is a significant internal nitrogen source for the overlying water of the Yangtze Estuary, and thus may contribute to the estuarine and coastal eutrophication. PMID:26991904

An Introduction to Developing an Urban Business Incubator.

ERIC Educational Resources Information Center

Montgomery, James; And Others

Designed to provide a brief overview of the considerations involved in establishing a small business incubator, this guide presents information on incubator classification, funding methods, incubator operation techniques, and two-year college involvement in the formation of a working business incubator. Part 1 describes a small business incubator…

Effects of fine sediment, hyporheic flow, and spawning site characteristics on survival and development of bull trout embryos

USGS Publications Warehouse

Bowerman, Tracy; Neilson, Bethany; Budy, Phaedra

2014-01-01

Successful spawning is imperative for the persistence of salmonid populations, but relatively little research has been conducted to evaluate factors affecting early life-stage survival for bull trout (Salvelinus confluentus), a threatened char. We conducted a field experiment to assess the relationship between site-specific environmental factors and bull trout embryo survival and fry emergence timing. Survival from egg to hatch was negatively related to percent fine sediment (<1 mm) in the redd and positively related to the strength of downwelling at spawning sites. Survival of eggs to fry emergence was also negatively related to fine sediment, and the best statistical models included additional variables that described the rate of downwelling and intragravel flow within the incubation environment. Fry emerged at an earlier stage in development from redds with high percentages of fine sediment. Increased hydraulic conductivity via redd construction and selection of spawning sites with strong downwelling appear to enhance hyporheic flow rates and bull trout egg survival, but early life-stage success may ultimately be limited by intrusion of fine sediment into the incubation environment.

Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

PubMed

Broman, Elias; Sachpazidou, Varvara; Dopson, Mark; Hylander, Samuel

2017-10-11

An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as 'dead zones') mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal 'dead zone' Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic 'signatures'. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on 'standby' to exploit the environment if they reach suitable habitats. © 2017 The Author(s).

Small Business Incubator Resource Kit.

ERIC Educational Resources Information Center

Small Business Administration, Washington, DC.

This kit consists of a set of resources to assist those interested in the start-up and management (incubation) of a new business. A guide to starting and managing a small business incubator (SBI) is provided. Included in the guide are the following: a discussion of the role and characteristics of the SBI concept; guidelines for carrying out the…

Evidence for the Existence of Autotrophic Nitrate-Reducing Fe(II)-Oxidizing Bacteria in Marine Coastal Sediment

PubMed Central

Laufer, Katja; Røy, Hans; Jørgensen, Bo Barker

2016-01-01

ABSTRACT Nitrate-reducing Fe(II)-oxidizing microorganisms were described for the first time ca. 20 years ago. Most pure cultures of nitrate-reducing Fe(II) oxidizers can oxidize Fe(II) only under mixotrophic conditions, i.e., when an organic cosubstrate is provided. A small number of nitrate-reducing Fe(II)-oxidizing cultures have been proposed to grow autotrophically, but unambiguous evidence for autotrophy has not always been provided. Thus, it is still unclear whether or to what extent Fe(II) oxidation coupled to nitrate reduction is an enzymatically catalyzed and energy-yielding autotrophic process or whether Fe(II) is abiotically oxidized by nitrite from heterotrophic nitrate reduction. The aim of the present study was to find evidence for the existence of autotrophic nitrate-reducing Fe(II) oxidizers in coastal marine sediments. Microcosm incubations showed that with increasing incubation times, the stoichiometric ratio of reduced nitrate/oxidized Fe(II) [NO3−reduced/Fe(II)oxidized] decreased, indicating a decreasing contribution of heterotrophic denitrification and/or an increasing contribution of autotrophic nitrate-reducing Fe(II) oxidation over time. After incubations of sediment slurries for >10 weeks, nitrate-reducing activity ceased, although nitrate was still present. This suggests that heterotrophic nitrate reduction had ceased due to the depletion of readily available organic carbon. However, after the addition of Fe(II) to these batch incubation mixtures, the nitrate-reducing activity resumed, and Fe(II) was oxidized, indicating the activity of autotrophic nitrate-reducing Fe(II) oxidizers. The concurrent reduction of 14C-labeled bicarbonate concentrations unambiguously proved that autotrophic C fixation occurred during Fe(II) oxidation and nitrate reduction. Our results clearly demonstrated that autotrophic nitrate-reducing Fe(II)-oxidizing bacteria were present in the investigated coastal marine sediments. IMPORTANCE Twenty years after the

Evaluation of the horizontal-to-vertical spectral ratio (HVSR) seismic method to determine sediment thickness in the vicinity of the south well field, Franklin county, OH

USGS Publications Warehouse

Haefner, R.J.; Sheets, R.A.; Andrews, R.E.

2010-01-01

The horizontal-to-vertical spectral ratio (HVSR) seismic method involves analyzing measurements of ambient seismic noise in three dimensions to determine the fundamental site resonance frequency. Resonance is excited by the interaction of surface waves (Rayleigh and Love) and body waves (vertically incident shear) with the high-contrast acoustic impedance boundary at the bedrock-sediment interface. Measurements were made to determine the method's utility for estimating thickness of unconsolidated glacial sediments at 18 locations at the South Well Field, Franklin County, OH, and at six locations in Pickaway County where sediment thickness was already known. Measurements also were made near a high-capacity production well (with pumping on and off ) and near a highway and a limestone quarry to examine changes in resonance frequencies over a 20-hour period. Although the regression relation for resonance frequency and sediment thickness had a relatively low r 2(0.322), estimates of sediment thickness were, on average, within 14 percent of known thicknesses. Resonance frequencies for pumping on and pumping off were identical, although the amplitude of the peak was nearly double under pumping conditions. Resonance frequency for the 20-hour period did not change, but the amplitude of the peak changed considerably, with a maximum amplitude in the early afternoon and minimum in the very early morning hours. Clay layers within unconsolidated sediments may influence resonance frequency and the resulting regression equation, resulting in underestimation of sediment thickness; however, despite this and other complicating factors, hydrogeologists should consider this method when thickness data are needed for unconsolidated sediments. ?? 2011 by The Ohio Academy of Science. All Rights Reserved.

Geochemical Tracers and Rates of Short-Chain Alkane Production in Gulf of Mexico Cold Seep Sediments

NASA Astrophysics Data System (ADS)

Sibert, R.; Bernard, B. B.; Brooks, J. M.; Hunter, K.; Joye, S. B.

2014-12-01

The organic-rich cold seep sediments in the deep Gulf of Mexico commonly contain mixtures of light hydrocarbon gases either dissolved in pore fluids, adsorbed to sediment particles, trapped in methane ice, or as free gas. The dominant component in these natural gas mixtures is typically methane (C1), but ethane (C2) and propane (C3) are nearly always present in trace or major amounts. The ratio of C1:C2:C3 varies but C2 and C3 are typically present at single digit percent levels, whereas methane usually dominates at >80%. Methane production proceeds by at least two well-studied mechanisms: either 1) by thermocatalytic cracking of fossil organic matter, or 2) as a direct product of microbial metabolism, methanogenesis. In contrast, ethane and propane production in deep-sea sediments has been historically attributed only to thermocatalytic processes. However, limited data suggests production of C2/C3 compounds through the activity of archaea. Such studies of microbial- driven dynamics of C2/C3 gases (i.e. 'alkanogenesis') in cold seep sediments are rare. Furthermore, the identities of potential substrates are poorly constrained and no attempt has been made to quantify production rates of C2/C3 gases. However, carbon isotopic data on ethane and propane from deep cores from the Gulf of Mexico suggest alkanogenesis at depth in the sediment column and alkane oxidation in uppermost oxidant-rich sediments. Here, we present the results of a series of incubation experiments using sediment slurries culled from GC600, one of the most prolific natural oil and gas seeps in the Gulf of Mexico. Rates of both alkane production and oxidation were measured under a variety of conditions to assess the net rates of alkane production and elucidate the driving microbiological mechanisms and controls on the central processes of >C1 alkane cycling in cold seep sediments. Microbial processes are important both in terms of alkane production and oxidation, raising many questions as to the

The denitrification paradox: The role of O2 in sediment N2O production

NASA Astrophysics Data System (ADS)

Barnes, Jonathan; Upstill-Goddard, Robert C.

2018-01-01

We designed a novel laboratory sediment flux chamber in which we maintained the headspace O2 partial pressure at preselected values, allowing us to experimentally regulate "in-situ" O2 to evaluate its role in net N2O production by an intertidal estuarine sediment (Tyne, UK). In short-term (30 h) incubations with 10 L of overlying estuarine water (∼3 cm depth) and headspace O2 regulation (headspace: sediment/water ratio ∼9:1), net N2O production was highest at 1.2% O2 (sub-oxic; 32.3 nmol N2O m-2 d-1), an order of magnitude higher than at either 0.0% (anoxic; 2.5 N2O nmol m-2 d-1) or 20.85% (ambient; 2.3 nmol N2O m-2 d-1) O2. In a longer-term sealed incubation (∼490 h) without O2 control, time-dependent behaviour of N2O in the tank headspace was highly non-linear with time, showing distinct phases: (i) an initial period of no or little change in O2 or N2O up to ∼ 100 h; (ii) a quasi-linear, inverse correlation between O2 and N2O to ∼360 h, in which O2 declined to ∼2.1% and N2O rose to ∼7800 natm; (iii) over the following 50 h a slower O2 decline, to ∼1.1%, and a more rapid N2O increase, to ∼12000 natm; (iv) over the next 24 h a slowed O2 decline towards undetectable levels and a sharp fall in N2O to ∼4600 natm; (iv) a continued N2O decrease at zero O2, to ∼3000 natm by ∼ 490 h. These results show clearly that rapid N2O consumption (∼115 nmol m-2 d-1), presumably via heterotrophic denitrification (HD), occurs under fully anoxic conditions and therefore that N2O production, which was optimal for sub-oxic O2, results from other nitrogen transformation processes. In experiments in which we amended sediment overlying water to either 1 mM NH4+ or 1 mM NO3-, N2O production rates were 2-134 nmol N2O m-2 d-1 (NH4+ addition) and 0.4-2.2 nmol N2O m-2 d-1 (NO3- addition). We conclude that processes involving NH4+ oxidation (nitrifier nitrification; nitrifier denitrification; nitrification-coupled denitrification) are principally responsible for N2O

21 CFR 880.5410 - Neonatal transport incubator.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Neonatal transport incubator. 880.5410 Section 880... Devices § 880.5410 Neonatal transport incubator. (a) Identification. A neonatal transport incubator is a... kept in a controlled environment while being transported for medical care. The device may include...

21 CFR 880.5410 - Neonatal transport incubator.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Neonatal transport incubator. 880.5410 Section 880... Devices § 880.5410 Neonatal transport incubator. (a) Identification. A neonatal transport incubator is a... kept in a controlled environment while being transported for medical care. The device may include...

Role of Central Amygdala Neuronal Ensembles in Incubation of Nicotine Craving.

PubMed

Funk, Douglas; Coen, Kathleen; Tamadon, Sahar; Hope, Bruce T; Shaham, Yavin; Lê, A D

2016-08-17

The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. Here, we further characterized incubation of nicotine craving in the rat model by determining whether this incubation is observed after adolescent-onset nicotine self-administration. We also used the neuronal activity marker Fos and the Daun02 chemogenetic inactivation procedure to identify cue-activated neuronal ensembles that mediate incubation of nicotine craving. We trained adolescent and adult male rats to self-administer nicotine (2 h/d for 12 d) and assessed cue-induced nicotine seeking in extinction tests (1 h) after 1, 7, 14, or 28 withdrawal days. In both adult and adolescent rats, nicotine seeking in the relapse tests followed an inverted U-shaped curve, with maximal responding on withdrawal day 14. Independent of the withdrawal day, nicotine seeking in the relapse tests was higher in adult than in adolescent rats. Analysis of Fos expression in different brain areas of adolescent and adult rats on withdrawal days 1 and 14 showed time-dependent increases in the number of Fos-positive neurons in central and basolateral amygdala, orbitofrontal cortex, ventral and dorsal medial prefrontal cortex, and nucleus accumbens core and shell. In adult Fos-lacZ transgenic rats, selective inactivation of nicotine-cue-activated Fos neurons in central amygdala, but not orbitofrontal cortex, decreased "incubated" nicotine seeking on withdrawal day 14. Our results demonstrate that incubation of nicotine craving occurs after adolescent-onset nicotine self-administration and that neuronal ensembles in central amygdala play a critical role in this incubation. The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. It is currently unknown whether incubation of craving also occurs after adolescent

A comparison of artificial incubation and natural incubation hatching success of gopher tortoise (Gopherus polyphemus) eggs in southern Mississippi

USGS Publications Warehouse

Noel, Krista M.; Qualls, Carl P.; Ennen, Joshua R.

2012-01-01

Recent studies have found that Gopher Tortoise, Gopherus polyphemus, populations in southern Mississippi exhibit low recruitment, due in part to very low hatching success of their eggs. We sought to determine if the cause(s) of this low hatching success was related to egg quality (intrinsic factors), unsuitability of the nest environment (extrinsic factors), or a combination of the two. In 2003, hatching success was monitored simultaneously for eggs from the same clutches that were incubated in the laboratory and left to incubate in nests. A subset of randomly chosen eggs from each clutch was incubated in the laboratory under physical conditions that were known to be conducive to successful hatching to estimate the proportion of eggs that were capable of hatching in a controlled setting. Hatching success in the laboratory was compared with that of eggs incubated in natural nests to estimate the proportion of eggs that failed to hatch presumably from extrinsic factors. Laboratory hatching success was 58.8%, suggesting that roughly 40% of the eggs were intrinsically incapable of hatching even when incubated under controlled conditions. Hatching success in natural nests, 16.7%, was significantly lower than hatching success in the laboratory, suggesting that approximately 42.1% of eggs were capable of hatching but failed to hatch due to some extrinsic aspect(s) of the nest environment. Thus, the low hatching success of Gopher Tortoise eggs in southern Mississippi appears to be attributable to a combination of intrinsic (egg quality) and extrinsic (nest environment) factors.

Early efforts in modeling the incubation period of infectious diseases with an acute course of illness.

PubMed

Nishiura, Hiroshi

2007-05-11

The incubation period of infectious diseases, the time from infection with a microorganism to onset of disease, is directly relevant to prevention and control. Since explicit models of the incubation period enhance our understanding of the spread of disease, previous classic studies were revisited, focusing on the modeling methods employed and paying particular attention to relatively unknown historical efforts. The earliest study on the incubation period of pandemic influenza was published in 1919, providing estimates of the incubation period of Spanish flu using the daily incidence on ships departing from several ports in Australia. Although the study explicitly dealt with an unknown time of exposure, the assumed periods of exposure, which had an equal probability of infection, were too long, and thus, likely resulted in slight underestimates of the incubation period. After the suggestion that the incubation period follows lognormal distribution, Japanese epidemiologists extended this assumption to estimates of the time of exposure during a point source outbreak. Although the reason why the incubation period of acute infectious diseases tends to reveal a right-skewed distribution has been explored several times, the validity of the lognormal assumption is yet to be fully clarified. At present, various different distributions are assumed, and the lack of validity in assuming lognormal distribution is particularly apparent in the case of slowly progressing diseases. The present paper indicates that (1) analysis using well-defined short periods of exposure with appropriate statistical methods is critical when the exact time of exposure is unknown, and (2) when assuming a specific distribution for the incubation period, comparisons using different distributions are needed in addition to estimations using different datasets, analyses of the determinants of incubation period, and an understanding of the underlying disease mechanisms.

Mechanisms involved in phosphorus mobility at sediment/water interface under redox oscillations in dam-reservoir context

NASA Astrophysics Data System (ADS)

Rapin, Anne; Grybos, Malgorzata; Rabiet, Marion; Kestens, Tim; Mourier, Brice; Deluchat, Veronique

2017-04-01

The construction of dams, in response to the growing human demand of water and electricity, leads to the perturbation of several natural biogeochemical cycles, including phosphorus (P). Given its high affinity for solid phases, P tends to accumulate with the sediments in dam-reservoirs. Since the sedimentary P may contribute to water eutrophication, attention should be paid to better understand the parameters, conditions and mechanisms controlling the release of P at the sediment/water interface in such a system. The mobility of P at sediment/water interface closely depends on bio-physico-chemical conditions (redox potential, pH, temperature). Champsanglard dam-reservoir (19.5 m height; 55 ha; Creuse, France) was constructed in 1982 and is annually subject to bathing bans caused by the development of cyanobacteria, although the surface water is classified by the EU Water Framework Directive as being of medium quality regarding total dissolved P. The sediments accumulated in this reservoir are relatively rich in P (1.81 ± 0.22 mgP/gDW), in the silt-sand fraction and characterized by high organic matter content (21 ± 0.1 %). The development of temporary anoxia during summer in hypolimnion and P distribution in the sediments (66% of P associated with amorphous Mn/Fe-oxy-hydroxydes) highlight the importance of the redox potential variation on P mobility. In this context, incubation experiments were conducted to evaluate the role of alternation between aerobic and anaerobic conditions on P sediment mobility. Surface sediments (Φ<2 mm) were incubated with a synthetic solution simulating the chemistry of Champsanglard reservoir water and submitted to two successive aerated and non-aerated phases. Physico-chemical composition (pH, Eh, P-PO43-, FeII, Mn, NO3-, SO42- and dissolved organic carbon (DOC)) and organic matter aromaticity (SUVA254) of the supernatant were monitored all along the incubation. The results showed that the development of anaerobic conditions

Dream Incubation: A Reconstruction of Ritual in Contemporary Form

ERIC Educational Resources Information Center

Reed, Henry

1976-01-01

Dream incubation is the ritual of going to sleep in a sacred place in anticipation of receiving a helpful dream from a divine benefactor. Drawing upon a variety of contemporary psychotherapeutic principles and procedures, author constructed an experimental ritual of incubation. (Editor)

The role of bacteria in the nutrient exchange between sediment and water in a flow-through system.

PubMed

Kairesalo, T; Tuominen, L; Hartikainen, H; Rankinen, K

1995-03-01

The contribution of bacteria to phosphorus (P) and nitrogen (N ) release from, or retention in, sediment was studied in a flow-through system. "Live" and formaldehyde-"killed" sediment communities were incubated in 25-liter bottles with a continuous flow of P- or P + N-enriched water. Sediment bacteria in the killed communities were inhibited by adding formaldehyde (final concentration 0.04% v/v) to the sediment before the start of the experiment. Bacterial activity in the live sediments measured with [(3)H]thymidine and [(14)C]leucine incorporation techniques did not change essentially during the experiment period (7-8 days). Chemical mechanisms were found to be of principal importance in PO4-P retention in the sediment. In the live samples, the net retention of PO4-P was lower than in the killed samples, which was likely due to the reduced O2 conditions in the sediment as a consequence of bacterial mineralization. In total P exchange, however, bacteria increased the retention rate by recycling dissolved organic P in the sediment. In the live communities the retention of N was very efficient, and all the introduced NH4 -N and NO3-N was immobilized by sediment bacteria. Nitrogen enrichment, however, did not alter the P exchange rates. The gradual emergence of bacterial activity (and grazing) in the killed communities, subsequent to the dilution of formaldehyde concentration, enhanced the release of PO4-P and NH4-N from sediment.

Learning Incubator: an instrument to foster entrepreneurship in Nursing.

PubMed

Backes, Dirce Stein; Obem, Marielle Kulakowski; Pereira, Simone Barbosa; Gomes, Carine Alves; Backes, Marli Terezinha Stein; Erdmann, Alacoque Lorenzini

2015-01-01

this study aimed to know the contributions of the Learning Incubator to the process of lifelong education in health. this is a qualitative field research whose data was collected from August to December 2014 by the focus group technique. The research had 34 employees of a Teaching Hospital in the central region of the state of Rio Grande do Sul that participated previously in the incubation process. from the data encoded by content analysis, three themes were selected: Learning Incubator - welcoming and integrating space; An instigating instrument that enhances possibilities; Continuous and lifelong education strategy. the Learning Incubator is an important instrument to foster entrepreneurship in nursing and other health areas due to its capacity of rethinking mechanized practices, to the possibility of instigating new ways of being and acting, and to the ability of creating and developing new ideas based on individual and institutional needs.

Large CH4 production fueled by autochthonous OC in an anoxic sediment

NASA Astrophysics Data System (ADS)

Grasset, Charlotte; Mendonça, Raquel; Villamor Saucedo, Gabriella; Sobek, Sebastian

2017-04-01

River damming and human-induced eutrophication both affect river and lake functioning, increase organic carbon (OC) sedimentation rates and generate anoxic conditions in bottom waters. Under these conditions, OC in sediments is decomposed into CO2 and CH4, a high potential greenhouse gas. It has been shown that the decomposition of land-derived (allochthonous) OC is inhibited at anoxic conditions, compared to OC internally produced (autochthonous). However, the overall extent and end products (CO2 or CH4) of anoxic decomposition remain poorly known for different types of OC, making it difficult to judge the effect of river damming and eutrophication on greenhouse gas emissions from inland waters. We incubated different types of allochthonous OC (terrestrial plants) and autochthonous OC (phytoplankton and aquatic vascular plants) in an anoxic sediment during 130 days. We aimed to test 1) if this addition of relatively fresh OC resulted in an increase of CH4 production and 2) if autochthonous OC would produce more CH4 than allochthonous OC. We assessed the contribution to CH4 production of the different OC sources (i.e. sediment or added OC) with stable isotope measurements. We found that the addition of relatively fresh OC greatly increased CH4 production. Autochthonous OC generally produced more CH4 than allochthonous OC, but the overall extent of CH4 production was highly variable between the different autochthonous OC types. The d13C-CH4 measurements indicated that CH4 originated exclusively from the added OC. We conclude that the production of CH4 is likely to to be high in eutrophic as well as in artificial lakes, especially when these systems have anoxic bottom waters and high internal primary productivity and thus a high supply of autochthonous OC to the sediment. The current expansion of reservoir construction in concert with almost globally prevalent anthropogenic eutrophication are therefore likely to increase CH4 production in inland waters.

A study of knowledge supernetworks and network robustness in different business incubators

NASA Astrophysics Data System (ADS)

Zhang, Haihong; Wu, Wenqing; Zhao, Liming

2016-04-01

As the most important intangible resource of the new generation of business incubators, knowledge has been studied extensively, particularly with respect to how it spreads among incubating firms through knowledge networks. However, these homogeneous networks do not adequately describe the heterogeneity of incubating firms in different types of business incubators. To solve the problem of heterogeneity, the notion of a knowledge supernetwork has been used both to construct a knowledge interaction model among incubating firms and to distinguish social network relationships from knowledge network relationships. The process of knowledge interaction and network evolution can then be simulated with a few rules for incubating firms regarding knowledge innovation/absorption, social network connection, and entry and exit, among other aspects. Knowledge and networks have been used as performance indicators to evaluate the evolution of knowledge supernetworks. Moreover, we study the robustness of incubating firms' social networks by employing four types of attack strategies. Based on our simulation results, we conclude that there have been significant knowledge interaction and network evolution among incubating firms on a periodic basis and that both specialized and diversified business incubators have every advantage necessary in terms of both knowledge and networks to cultivate start-up companies. As far as network robustness is concerned, there is no obvious difference between the two types of business incubators with respect to the stability of their network structures, but specialized business incubators have stronger network communication abilities than diversified business incubators.

Lewis Incubator for Technology (LIFT)

NASA Technical Reports Server (NTRS)

Zeman, Wayne P.; King, Joseph B.; Jankura, Richard E., Jr.

2004-01-01

This report summarizes the work done to operate the Lewis Incubator for Technology for the period October 2000 through September 2004. The Lewis Incubator helped the startup and growth of technology based businesses with the potential to incorporate technology from the NASA Glenn Research Center.

What is the incubation period for listeriosis?

PubMed

Goulet, Véronique; King, Lisa A; Vaillant, Véronique; de Valk, Henriette

2013-01-10

Listeriosis is a foodborne infection with a low incidence but a high case fatality rate. Unlike common foodborne diseases, the incubation period can be long. The first incubation periods were documented during a large listeriosis outbreak published in 1987 by Linnan and al. in the New England Journal of Medicine (range: 3 days to 70 days). Data on the incubation period of listeriosis are scarce. Our study aim was to estimate precisely the incubation period of listeriosis using available data since 1987. We estimated the incubation period of listeriosis using available published data and data from outbreak investigations carried out by the French National Institute for Public Health Surveillance. We selected cases with an incubation period calculated when a patient had a single exposure to a confirmed food source contaminated by Listeria monocytogenes. We identified 37 cases of invasive listeriosis (10 cases with central nervous system involvement (CNS cases), 15 bacteraemia cases and 12 pregnancy-associated cases) and 9 outbreaks with gastroenteritis. The overall median incubation period of invasive listeriosis was 8 days (range: 1-67 days) and differed significantly by clinical form of the disease (p<0.0001). A longer incubation period was observed for pregnancy-associated cases (median: 27.5 days; range: 17-67 days) than for CNS cases (median: 9 days; range: 1-14 days) and for bacteraemia cases (median: 2 days; range: 1-12 days). For gastroenteritis cases, the median incubation period was 24 hours with variation from 6 to 240 hours. This information has implications for the investigation of food borne listeriosis outbreaks as the incubation period is used to determine the time period for which a food history is collected. We believe that, for listeriosis outbreaks, adapting the exposure window for documenting patients' food histories in accordance with the clinical form of infection will facilitate the identification of food products as the source of

Redox transformation and reductive immobilization of Cr(VI) in the Columbia River hyporheic zone sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Fen; Liu, Yuanyuan; Zachara, John

An experimental and modeling study was conducted to investigate the redox transformation and reductive immobilization of groundwater contaminant Cr in hyporheic zone (HZ) sediments from U.S. Department of Energy’s Hanford site, where groundwater Cr(VI) is migrating and discharging to the nearby Columbia River. Experimental results revealed that Cr(VI) can be reduced to immobile reduced Cr by the HZ sediments in the presence/absence of O2. Anaerobic pre-incubation of the sediments increased the effective rate of Cr reduction that was correlated with the increase in HCl-extractable Fe(II) content in the sediments. The reduced Cr was stable in exposure to O2 under field-relevantmore » pH (~7.5) and Mn-containing (~0.02% w/w) conditions. The Cr(VI) reduction rate showed a multi-rate behavior, apparently reflecting the presence of reductants with different reactivity in the sediments. The results from this study indicated that the HZ sediments can reductively immobilize Cr and the sediment redox capacity can be recharged through microbial activities. The results implied that HZ can play a role as a natural permeable redox barrier for removing groundwater Cr before it discharges into a river system.« less

An Investigative Study into Perspectives and Experiences of Incubates at the Chandaria Business Innovation and Incubation Centre at the Kenyatta University

ERIC Educational Resources Information Center

Munyanyiwa, Takaruza; Mutsau, Morgen; Rudhumbu, Norman; Svotwa, Douglas

2016-01-01

The study presents results from an investigative study undertaken at the Kenyatta University (KU) Chandaria Business Innovation and Incubation Centre. A total of 10 incubates representing 10 projects were engaged in face to face interviews. The incubates were appreciative of the value that incubation centre such as the one at KU contributed to…

Redox transformation and reductive immobilization of Cr(VI) in the Columbia River hyporheic zone sediments

NASA Astrophysics Data System (ADS)

Xu, Fen; Liu, Yuanyuan; Zachara, John; Bowden, Mark; Kennedy, David; Plymale, Andrew E.; Liu, Chongxuan

2017-12-01

An experimental and modeling study was conducted to investigate the redox transformation and reductive immobilization of groundwater contaminant Cr in hyporheic zone (HZ) sediments from U.S. DOE's Hanford Site, where groundwater Cr(VI) is migrating and discharging to the nearby Columbia River. Experimental results revealed that Cr(VI) can be reduced and immobilized by the HZ sediments in the presence/absence of O2. Anaerobic pre-incubation of the sediments increased the effective rate of Cr reduction that was correlated with the increase in HCl-extractable Fe(II) content in the sediments. The reduced Cr was stable when exposed to O2 under field-relevant pH (7.5) with and without dissolved Mn(II), which might be oxidized to form Mn(III/IV) oxides that may oxidize reduced Cr. The Cr(VI) reduction rate showed a multi-rate behavior, apparently reflecting the presence of reductants with different reactivity in the sediments. The results from this study indicated that the HZ sediments can reductively immobilize Cr and the sediment redox capacity can be recharged through microbial activities. The results implied that HZ can play a role as a natural permeable redox barrier for removing groundwater Cr before it discharges into a river system.

Measuring nonpolar organic contaminant partitioning in three Norwegian sediments using polyethylene passive samplers.

PubMed

Allan, Ian J; Ruus, Anders; Schaanning, Morten T; Macrae, Kenneth J; Næs, Kristoffer

2012-04-15

Freely dissolved pore water concentrations of polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), penta- and hexachlorobenzene (PeCB and HCB), octachlorostyrene (OCS), p,p'-DDE and p,p'-DDD were measured in bottom sediments from three sites in Norway. Sediments were from Aker Brygge, site of a former shipyard in the inner part of Oslofjord, Frierfjord in the Grenlandsfjord area, impacted during the 50 year-long activity of a magnesium smelter plant, and from Kristiansand harbour, site with high industrial activity. Low density polyethylene (LDPE) membrane samplers were exposed to these sediments in laboratory incubation under constant and low-level agitation for periods of 1, 2, 6, 13, 23 and 50 days. Freely dissolved pore water concentrations were estimated from contaminant masses accumulated and sampling rates obtained from the measurement of kinetics of dissipation of performance reference compounds (PRCs). Marked differences in freely dissolved PAH concentrations and resulting organic carbon-normalised sediment-pore water partition coefficients, logK(TOC), between these three sediments could be observed despite the generally similar total sediment concentrations. In contrast with the PAH data, partitioning of PCBs and other organochlorine compounds (OCs) was relatively similar in all three sediments. For sediments from Frierfjord and Kristiansand, logK(TOC) values were lower for PCBs/OCs than for PAHs, indicating higher availability. Similar partitioning of PAHs and PCBs/OCs was found for sediments from Aker Brygge. No simple logK(oc)-logK(ow) relationships could model these data successfully. These results support the notion that the assessment of the risk posed by these compounds present in sediments in most cases requires actual measurement of contaminant availability. Copyright © 2012 Elsevier B.V. All rights reserved.

Marketing Plan for the National Security Technology Incubator

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

This marketing plan was developed as part of the National Security Preparedness Project by the Arrowhead Center of New Mexico State University. The vision of the National Security Technology Incubator program is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety and security. The plan defines important aspects of developing the incubator, such as defining the target market, marketing goals, and creating strategies to reach the target market while meeting those goals. The three main marketing goals of the incubator are: 1) developing marketing materials for the incubatormore » program; 2) attracting businesses to become incubator participants; and 3) increasing name recognition of the incubator program on a national level.« less

Volatile fatty acids as substrates for iron and sulfate reduction in Arctic marine sediments, Svalbard

NASA Astrophysics Data System (ADS)

Finke, N.; Vandieken, V.; Jorgensen, B. B.

2006-12-01

Anaerobic degradation of complex organic material in aquatic systems is a multi-step process. The metabolic products of fermentative bacteria serve as electron donors for the terminal oxidizing bacteria. In marine sediments, iron reduction and sulfate reduction are generally the most important terminal oxidation processes in the upper anoxic zone [1]. Microorganisms that reduce iron and sulfate may use a broad range of electron donors, yet the list of potential substrates provides little information about the substrates used in situ by these organisms. Investigations on the electron donors for sulfate reducers in marine sediments have shown that volatile fatty acids (VFA), and in particular acetate, together with hydrogen are the major substrates (e.g. [2-4]). Similar investigations for iron reduction or simultaneous iron and sulfate reduction are lacking for marine sediments. Furthermore, most of these studies were made in temperate sediments and little is known about the substrates for sulfate reducers in permanently cold sediments, which account for >90% of the ocean floor [5]. We investigated the relative contributions of iron reduction and sulfate reduction to the terminal oxidation of organic carbon and the importance of acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in permanently cold, Arctic sediments from Svalbard. In the surface layer (0-2 cm) sulfate reduction accounted for 2/3 of the organic carbon oxidation (determined as DIC production), the remaining 1/3 were attributed to iron reduction. In the 5-9 cm layer sulfate reduction was the sole important terminal oxidation step. The contribution of acetate to terminal oxidation was determined by radiotracer incubation as well as from the accumulation after the inhibition of sulfate reduction by selenate. The rates determined with the two methods varied by less than 20%. Acetate turnover, determined with the tracer incubations, accounted for 10 and 40% of

Effects of sediment transport on survival of salmonid embryos in a natural stream: A simulation approach

Treesearch

Thomas E. Lisle; Jack Lewis

1992-01-01

A model is presented that simulates the effects of streamflow and sediment transport on survival of salmonid embryos incubating in spawning gravels in a natural channel. Components of the model include a 6-yr streamflow record, an empirical bed load-transport function, a relation between transport and infiltration of sandy bedload into a gravel bed, effects of fine-...

Role of Central Amygdala Neuronal Ensembles in Incubation of Nicotine Craving

PubMed Central

Coen, Kathleen; Tamadon, Sahar; Hope, Bruce T.; Shaham, Yavin; Lê, A.D.

2016-01-01

The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. Here, we further characterized incubation of nicotine craving in the rat model by determining whether this incubation is observed after adolescent-onset nicotine self-administration. We also used the neuronal activity marker Fos and the Daun02 chemogenetic inactivation procedure to identify cue-activated neuronal ensembles that mediate incubation of nicotine craving. We trained adolescent and adult male rats to self-administer nicotine (2 h/d for 12 d) and assessed cue-induced nicotine seeking in extinction tests (1 h) after 1, 7, 14, or 28 withdrawal days. In both adult and adolescent rats, nicotine seeking in the relapse tests followed an inverted U-shaped curve, with maximal responding on withdrawal day 14. Independent of the withdrawal day, nicotine seeking in the relapse tests was higher in adult than in adolescent rats. Analysis of Fos expression in different brain areas of adolescent and adult rats on withdrawal days 1 and 14 showed time-dependent increases in the number of Fos-positive neurons in central and basolateral amygdala, orbitofrontal cortex, ventral and dorsal medial prefrontal cortex, and nucleus accumbens core and shell. In adult Fos–lacZ transgenic rats, selective inactivation of nicotine-cue-activated Fos neurons in central amygdala, but not orbitofrontal cortex, decreased “incubated” nicotine seeking on withdrawal day 14. Our results demonstrate that incubation of nicotine craving occurs after adolescent-onset nicotine self-administration and that neuronal ensembles in central amygdala play a critical role in this incubation. SIGNIFICANCE STATEMENT The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. It is currently unknown whether incubation of craving

High turnover of fungal hyphae in incubation experiments.

PubMed

de Vries, Franciska T; Bååth, Erland; Kuyper, Thom W; Bloem, Jaap

2009-03-01

Soil biological studies are often conducted on sieved soils without the presence of plants. However, soil fungi build delicate mycelial networks, often symbiotically associated with plant roots (mycorrhizal fungi). We hypothesized that as a result of sieving and incubating without plants, the total fungal biomass decreases. To test this, we conducted three incubation experiments. We expected total and arbuscular mycorrhizal (AM) fungal biomass to be higher in less fertilized soils than in fertilized soils, and thus to decrease more during incubation. Indeed, we found that fungal biomass decreased rapidly in the less fertilized soils. A shift towards thicker hyphae occurred, and the fraction of septate hyphae increased. However, analyses of phospholipid fatty acids (PLFAs) and neutral lipid fatty acids could not clarify which fungal groups were decreasing. We propose that in our soils, there was a fraction of fungal biomass that was sensitive to fertilization and disturbance (sieving, followed by incubation without plants) with a very high turnover (possibly composed of fine hyphae of AM and saprotrophic fungi), and a fraction that was much less vulnerable with a low turnover (composed of saprotrophic fungi and runner hyphae of AMF). Furthermore, PLFAs might not be as sensitive in detecting changes in fungal biomass as previously thought.

Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing.

PubMed

Webster, Gordon; Rinna, Joachim; Roussel, Erwan G; Fry, John C; Weightman, Andrew J; Parkes, R John

2010-05-01

Stable isotope probing of prokaryotic DNA was used to determine active prokaryotes using (13)C-labelled substrates (glucose, acetate, CO(2)) in sediment slurries from different biogeochemical zones of the Severn Estuary, UK. Multiple, low concentrations (5 x 100 microM) of (13)C-substrate additions and short-term incubations (7 days) were used to minimize changes in the prokaryotic community, while achieving significant (13)C-incorporation. Analysis demonstrated clear metabolic activity within all slurries, although neither the net sulphate removal nor CH(4) production occurred in the anaerobic sulphate reduction and methanogenesis zone slurries. Some similarities occurred in the prokaryotic populations that developed in different sediment slurries, particularly in the aerobic and dysaerobic zone slurries with (13)C-glucose, which were dominated by Gammaproteobacteria and Marine Group 1 Archaea, whereas both anaerobic sediment slurries incubated with (13)C-acetate showed incorporation into Epsilonproteobacteria and other bacteria, with the sulphate reduction zone slurry also showing (13)C-acetate utilization by Miscellaneous Crenarchaeotic Group Archaea. The lower potential energy methanogenesis zone slurries were the only conditions where no (13)C-incorporation into Archaea occurred, despite Bacteria being labelled; this was surprising because Archaea have been suggested to be adapted to low-energy conditions. Overall, our results highlight that uncultured prokaryotes play important ecological roles in tidal sediments of the Severn Estuary, providing new metabolic information for novel groups of Archaea and suggesting broader metabolisms for largely uncultivated Bacteria.

Low Incubation Temperature Induces DNA Hypomethylation in Lizard Brains.

PubMed

Paredes, Ursula; Radersma, Reinder; Cannell, Naomi; While, Geoffrey M; Uller, Tobias

2016-07-01

Developmental stress can have organizational effects on suites of physiological, morphological, and behavioral characteristics. In lizards, incubation temperature is perhaps the most significant environmental variable affecting embryonic development. Wall lizards (Podarcis muralis) recently introduced by humans from Italy to England experience stressfully cool incubation conditions, which we here show reduce growth and increase the incidence of scale malformations. Using a methylation-sensitive AFLP protocol optimized for vertebrates, we demonstrate that this low incubation temperature also causes hypomethylation of DNA in brain tissue. A consistent pattern across methylation-susceptible AFLP loci suggests that hypomethylation is a general response and not limited to certain CpG sites. The functional consequences of hypomethylation are unknown, but it could contribute to genome stability and regulation of gene expression. Further studies of the effects of incubation temperature on DNA methylation in ectotherm vertebrates may reveal mechanisms that explain why the embryonic thermal environment often has physiological and behavioral consequences for offspring. © 2016 Wiley Periodicals, Inc.

Southwest Regional Clean Energy Incubation Initiative (SRCEII)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Webber, Michael

The Austin Technology Incubator’s (ATI’s) Clean Energy Incubator at the University of Texas at Austin (ATI-CEI) utilized the National Incubator Initiative for Clean Energy (NIICE) funding to establish the Southwest Regional Clean Energy Incubation Initiative, composed of clean energy incubators from The University of Texas at Austin (UT-Austin), The University of Texas at El Paso (UTEP), The University of Texas at San Antonio (UTSA), and Texas A&M University (TAMU).

Biparental incubation-scheduling: no experimental evidence for major energetic constraints

PubMed Central

Cresswell, Will; Rutten, Anne L.; Valcu, Mihai; Kempenaers, Bart

2015-01-01

Incubation is energetically demanding, but it is debated whether these demands constrain incubation-scheduling (i.e., the length, constancy, and timing of incubation bouts) in cases where both parents incubate. Using 2 methods, we experimentally reduced the energetic demands of incubation in the semipalmated sandpiper, a biparental shorebird breeding in the harsh conditions of the high Arctic. First, we decreased the demands of incubation for 1 parent only by exchanging 1 of the 4 eggs for an artificial egg that heated up when the focal bird incubated. Second, we reanalyzed the data from the only published experimental study that has explicitly tested energetic constraints on incubation-scheduling in a biparentally incubating species (Cresswell et al. 2003). In this experiment, the energetic demands of incubation were decreased for both parents by insulating the nest cup. We expected that the treated birds, in both experiments, would change the length of their incubation bouts, if biparental incubation-scheduling is energetically constrained. However, we found no evidence that heating or insulation of the nest affected the length of incubation bouts: the combined effect of both experiments was an increase in bout length of 3.6min (95% CI: −33 to 40), which is equivalent to a 0.5% increase in the length of the average incubation bout. These results demonstrate that the observed biparental incubation-scheduling in semipalmated sandpipers is not primarily driven by energetic constraints and therefore by the state of the incubating bird, implying that we still do not understand the factors driving biparental incubation-scheduling. PMID:25713473

Biparental incubation-scheduling: no experimental evidence for major energetic constraints.

PubMed

Bulla, Martin; Cresswell, Will; Rutten, Anne L; Valcu, Mihai; Kempenaers, Bart

2015-01-01

Incubation is energetically demanding, but it is debated whether these demands constrain incubation-scheduling (i.e., the length, constancy, and timing of incubation bouts) in cases where both parents incubate. Using 2 methods, we experimentally reduced the energetic demands of incubation in the semipalmated sandpiper, a biparental shorebird breeding in the harsh conditions of the high Arctic. First, we decreased the demands of incubation for 1 parent only by exchanging 1 of the 4 eggs for an artificial egg that heated up when the focal bird incubated. Second, we reanalyzed the data from the only published experimental study that has explicitly tested energetic constraints on incubation-scheduling in a biparentally incubating species (Cresswell et al. 2003). In this experiment, the energetic demands of incubation were decreased for both parents by insulating the nest cup. We expected that the treated birds, in both experiments, would change the length of their incubation bouts, if biparental incubation-scheduling is energetically constrained. However, we found no evidence that heating or insulation of the nest affected the length of incubation bouts: the combined effect of both experiments was an increase in bout length of 3.6min (95% CI: -33 to 40), which is equivalent to a 0.5% increase in the length of the average incubation bout. These results demonstrate that the observed biparental incubation-scheduling in semipalmated sandpipers is not primarily driven by energetic constraints and therefore by the state of the incubating bird, implying that we still do not understand the factors driving biparental incubation-scheduling.

[Simulated study of algal fatty acid degradation in hypoxia seawater-sediment interface along China coastal area].

PubMed

Sui, Wei-Wei; Ding, Hai-Bing; Yang, Gui-Peng; Lu, Xiao-Lan; Li, Wen-Juan; Sun, Li-Qun

2013-11-01

Series of laboratory incubation experiments were conducted to simulate degradation of organic matter in sediment-seawater interface in hypoxia enviroments along China coastal area. Under four different redox conditions (oxygen saturation: 100%, 50%, 25% and 0%), degradations of seveal biomarkers originated from Skeletonema costatum, a typical red tide alage along China coastal area were tracked. By analyzing concentrations of four fatty acid biomarkers [14:0, 16:0, 16:1(7) and 20:5] obtained at various sampling time, results showed that their concentrations decreased significantly after 2-3 weeks' incubation. Then, their concentrations changed very slowly or very little. However, degradation of the four fatty acids varied dramatically in different incubation systems. Fatty acids 14:0, 16:1(7) and 20:5 were degraded completely in all incubation systems after two-month incubation, but 25% to 35% of 16:0 was reserved in the systems. Based on multi-G model, degradations of the four fatty acids were quantively described. The results indicated that all four fatty acids had fast-degraded and slow-degraded fractions. Their degradation rate constants (k(av)) ranged from 0.079 to 0.84 d(-1). The fastest degradation of 14:0 and 16:1 (7) occurred under 25% oxygen concentrations. For these two compounds, in the fastest degradation system, their k(av), values were 2.3 folds and 1.7 folds higher than those in the slowest degradation system [50% oxygen saturation for 14:0 and 100% oxygen saturation for 16:1(7)] respectively. The 16:0 was degraded fastest under the anoxic condition and slowest under the 50% oxygen saturation. The ratio of the two k(av)s was 2.1. The k(av)s of 20:5 had a positive relationship with oxygen saturations. Results of this study suggested that besides oxgen saturations, structure and features of organic compounds, roles of microbe in the envrioments and etc. might affect degradations of fatty acids in S. costatum in hypoxia sediment-seawater interface

Active noise control for infant incubators.

PubMed

Yu, Xun; Gujjula, Shruthi; Kuo, Sen M

2009-01-01

This paper presents an active noise control system for infant incubators. Experimental results show that global noise reduction can be achieved for infant incubator ANC systems. An audio-integration algorithm is presented to introduce a healthy audio (intrauterine) sound with the ANC system to mask the residual noise and soothe the infant. Carbon nanotube based transparent thin film speaker is also introduced in this paper as the actuator for the ANC system to generate the destructive secondary sound, which can significantly save the congested incubator space and without blocking the view of doctors and nurses.

Low-temperature incubation using a water supply

USGS Publications Warehouse

Wolf, K.; Quimby, M.C.

1967-01-01

Cell and tissue culture has been concerned primarily with homiothermic vertebrate cells which require incubation at about 37 C, and there is a great variety of incubators designed to maintain temperatures which are usually above ambient. The culture of poikilothermic vertebrate cells--and invertebrate, plant, and some microbial cells--can often be carried out at ambient temperatures, but for some work cooler conditions must be provided. Variety among the so-called low-temperature incubators is somewhat restricted; there are no small units, and all require a power source to maintain temperatures below ambient. We have used a gravity-fed water supply for 5 years to provide trouble-free, constant, low-temperature incubation of stock cultures of fish and amphibian cells. Though it is but a small part of our low-temperature incubator capacity, it has no power requirements and it provides maximal protection against temperature rises which could be lethal to some of the cell lines. Though the system has limitations, there is a considerable likelihood that the domestic water supply in other laboratories can also be used to provide low-temperature incubation.

Innovation Incubator: Whisker Labs Technical Evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sparn, Bethany F.; Frank, Stephen M.; Earle, Lieko

The Wells Fargo Innovation Incubator (IN2) is a program to foster and accelerate startup companies with commercial building energy-efficiency and demand management technologies. The program is funded by the Wells Fargo Foundation and co-administered by the National Renewable Energy Laboratory (NREL). Whisker Labs, an Oakland, California-based company, was one of four awardees in the first IN2 cohort and was invited to participate in the program because of its novel electrical power sensing technology for circuit breakers. The stick-on Whisker meters install directly on the front face of the circuit breakers in an electrical panel using adhesive, eliminating the need tomore » open the panel and install current transducers (CTs) on the circuit wiring.« less

Effect of leaf incubation temperature profiles on Agrobacterium tumefaciens-mediated transient expression.

PubMed

Jung, Sang-Kyu; McDonald, Karen A; Dandekar, Abhaya M

2015-01-01

Agrobacterium tumefaciens-mediated transient expression is known to be highly dependent on incubation temperature. Compared with early studies that were conducted at constant temperature, we examined the effect of variable leaf incubation temperature on transient expression. As a model system, synthetic endoglucanase (E1) and endoxylanase (Xyn10A) genes were transiently expressed in detached whole sunflower leaves via vacuum infiltration for biofuel applications. We found that the kinetics of transient expression strongly depended on timing of the temperature change as well as leaf incubation temperature. Surprisingly, we found that high incubation temperature (27-30 °C) which is suboptimal for T-DNA transfer, significantly enhanced transient expression if the high temperature was applied during the late phase (Day 3-6) of leaf incubation whereas incubation temperature in a range of 20-25 °C for an early phase (Day 0-2) resulted in higher production. On the basis of these results, we propose that transient expression is governed by both T-DNA transfer and protein synthesis in plant cells that have different temperature dependent kinetics. Because the phases were separated in time and had different optimal temperatures, we were then able to develop a novel two phase optimization strategy for leaf incubation temperature. Applying the time-varying temperature profile, we were able to increase the protein accumulation by fivefold compared with the control at a constant temperature of 20 °C. From our knowledge, this is the first report illustrating the effect of variable temperature profiling for improved transient expression. © 2015 American Institute of Chemical Engineers.

Noise level in neonatal incubators: A comparative study of three models.

PubMed

Fernández Zacarías, F; Beira Jiménez, J L; Bustillo Velázquez-Gaztelu, P J; Hernández Molina, R; Lubián López, Simón

2018-04-01

Preterm infants usually have to spend a long time in an incubator, excessive noise in which can have adverse physiological and psychological effects on neonates. In fact, incubator noise levels typically range from 45 to 70 dB but differences in this respect depend largely on the noise measuring method used. The primary aim of this work was to assess the extent to which noise in an incubator comes from its own fan and how efficiently the incubator can isolate external noise. Three different incubator models were characterized for acoustic performance by measuring their internal noise levels in an anechoic chamber, and also for noise isolation efficiency by using a pink noise source in combination with an internal and an external microphone that were connected to an SVAN958 noise analyzer. The incubators studied produced continuous equivalent noise levels of 53.5-58 dB and reduced external noise by 5.2-10.4 dB. A preterm infant in an incubator is exposed to noise levels clearly exceeding international recommendations even though such levels usually comply with the limit set in the standard IEC60601-2-19: 2009 (60 dBA) under normal conditions of use. Copyright © 2018. Published by Elsevier B.V.

Immediate and long-term transcriptional response of hind muscle tissue to transient variation of incubation temperature in broilers.

PubMed

Naraballobh, Watcharapong; Trakooljul, Nares; Muráni, Eduard; Brunner, Ronald; Krischek, Carsten; Janisch, Sabine; Wicke, Michael; Ponsuksili, Siriluck; Wimmers, Klaus

2016-05-04

In oviparous species accidental variation of incubation temperatures may occur under natural conditions and mechanisms may have evolved by natural selection that facilitate coping with these stressors. However, under controlled artificial incubation modification of egg incubation temperature has been shown to have a wide-ranging impact on post-hatch development in several poultry species. Because developmental changes initiated in-ovo can affect poultry production, understanding the molecular routes and epigenetic alterations induced by incubation temperature differences may allow targeted modification of phenotypes. In order to identify molecular pathways responsive to variable incubation temperature, broiler eggs were incubated at a lower or higher temperature (36.8 °C, 38.8 °C) relative to control (37.8 °C) over two developmental intervals, embryonic days (E) 7-10 and 10-13. Global gene expression of M. gastrocnemius was assayed at E10, E13, and slaughter age [post-hatch day (D) 35] (6 groups; 3 time points; 8 animals each) by microarray analysis and treated samples were compared to controls within each time point. Transcript abundance differed for between 113 and 738 genes, depending on treatment group, compared to the respective control. In particular, higher incubation temperature during E7-10 immediately affected pathways involved in energy and lipid metabolism, cell signaling, and muscle development more so than did other conditions. But lower incubation temperature during E10-13 affected pathways related to cellular function and growth, and development of organ, tissue, and muscle as well as nutrient metabolism pathways at D35. Shifts in incubation temperature provoke specific immediate and long-term transcriptional responses. Further, the transcriptional response to lower incubation temperature, which did not affect the phenotypes, mediates compensatory effects reflecting adaptability. In contrast, higher incubation temperature triggers gene

Temperature Dependence of Apparent Respiratory Quotients and Oxygen Penetration Depth in Contrasting Lake Sediments

NASA Astrophysics Data System (ADS)

Sobek, Sebastian; Gudasz, Cristian; Koehler, Birgit; Tranvik, Lars J.; Bastviken, David; Morales-Pineda, María.

2017-11-01

Lake sediments constitute an important compartment in the carbon cycle of lakes, by burying carbon over geological timescales and by production and emission of greenhouse gases. The degradation of organic carbon (OC) in lake sediments is linked to both temperature and oxygen (O2), but the interactive nature of this regulation has not been studied in lake sediments in a quantitative way. We present the first systematic investigation of the effects of temperature on the apparent respiratory quotient (RQ, i.e., the molar ratio between carbon dioxide (CO2) production and O2 consumption) in two contrasting lake sediments. Laboratory incubations of sediment cores of a humic lake and an eutrophic lake across a 1-21°C temperature gradient over 157 days revealed that both CO2 production and O2 consumption were positively, exponentially, and similarly dependent on temperature. The apparent RQ differed significantly between the lake sediments (0.63 ± 0.26 and 0.99 ± 0.28 in the humic and the eutrophic lake, respectively; mean ± SD) and was significantly and positively related to temperature. The O2 penetration depth into the sediment varied by a factor of 2 over the 1-21°C temperature range and was significantly, negatively, and similarly related to temperature in both lake sediments. Accordingly, increasing temperature may influence the overall extent of OC degradation in lake sediments by limiting O2 supply to aerobic microbial respiration to the topmost sediment layer, resulting in a concomitant shift to less effective anaerobic degradation pathways. This suggests that temperature may represent a key controlling factor of the OC burial efficiency in lake sediments.

Temperature and Cyanobacterial Bloom Biomass Influence Phosphorous Cycling in Eutrophic Lake Sediments

PubMed Central

Chen, Mo; Ye, Tian-Ran; Krumholz, Lee R.; Jiang, He-Long

2014-01-01

Cyanobacterial blooms frequently occur in freshwater lakes, subsequently, substantial amounts of decaying cyanobacterial bloom biomass (CBB) settles onto the lake sediments where anaerobic mineralization reactions prevail. Coupled Fe/S cycling processes can influence the mobilization of phosphorus (P) in sediments, with high releases often resulting in eutrophication. To better understand eutrophication in Lake Taihu (PRC), we investigated the effects of CBB and temperature on phosphorus cycling in lake sediments. Results indicated that added CBB not only enhanced sedimentary iron reduction, but also resulted in a change from net sulfur oxidation to sulfate reduction, which jointly resulted in a spike of soluble Fe(II) and the formation of FeS/FeS2. Phosphate release was also enhanced with CBB amendment along with increases in reduced sulfur. Further release of phosphate was associated with increases in incubation temperature. In addition, CBB amendment resulted in a shift in P from the Fe-adsorbed P and the relatively unreactive Residual-P pools to the more reactive Al-adsorbed P, Ca-bound P and organic-P pools. Phosphorus cycling rates increased on addition of CBB and were higher at elevated temperatures, resulting in increased phosphorus release from sediments. These findings suggest that settling of CBB into sediments will likely increase the extent of eutrophication in aquatic environments and these processes will be magnified at higher temperatures. PMID:24682039

A Long-Term Cultivation of an Anaerobic Methane-Oxidizing Microbial Community from Deep-Sea Methane-Seep Sediment Using a Continuous-Flow Bioreactor

PubMed Central

Aoki, Masataka; Ehara, Masayuki; Saito, Yumi; Yoshioka, Hideyoshi; Miyazaki, Masayuki; Saito, Yayoi; Miyashita, Ai; Kawakami, Shuji; Yamaguchi, Takashi; Ohashi, Akiyoshi; Nunoura, Takuro; Takai, Ken; Imachi, Hiroyuki

2014-01-01

Anaerobic oxidation of methane (AOM) in marine sediments is an important global methane sink, but the physiological characteristics of AOM-associated microorganisms remain poorly understood. Here we report the cultivation of an AOM microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor with polyurethane sponges, called the down-flow hanging sponge (DHS) bioreactor. We anaerobically incubated deep-sea methane-seep sediment collected from the Nankai Trough, Japan, for 2,013 days in the bioreactor at 10°C. Following incubation, an active AOM activity was confirmed by a tracer experiment using 13C-labeled methane. Phylogenetic analyses demonstrated that phylogenetically diverse Archaea and Bacteria grew in the bioreactor. After 2,013 days of incubation, the predominant archaeal components were anaerobic methanotroph (ANME)-2a, Deep-Sea Archaeal Group, and Marine Benthic Group-D, and Gammaproteobacteria was the dominant bacterial lineage. Fluorescence in situ hybridization analysis showed that ANME-1 and -2a, and most ANME-2c cells occurred without close physical interaction with potential bacterial partners. Our data demonstrate that the DHS bioreactor system is a useful system for cultivating fastidious methane-seep-associated sedimentary microorganisms. PMID:25141130

Emission of volatile organic compounds from medical equipment inside neonatal incubators.

PubMed

Colareta Ugarte, U; Prazad, P; Puppala, B L; Schweig, L; Donovan, R; Cortes, D R; Gulati, A

2014-08-01

To determine emission of volatile organic compounds (VOCs) from plastic medical equipment within an incubator. Air samples from incubators before and after adding medical equipment were analyzed using EPA TO-15 methodology. Headspace analysis was used to identify VOC emissions from each medical equipment item. Air changes per hour (ACH) of each incubator were determined and used to calculate the emission rate of identified VOCs. Cyclohexanone was identified in all incubator air samples. At 28 °C, the mean concentration before and after adding medical equipment items was 2.1 ± 0.6 and 57.2 ± 14.9 μg m(-3),respectively (P<0.01). Concentrations increased to a mean of 83.8 ± 23.8 μg m(-)(3) (P<0.01) at 37(o)C and 93.0 ± 45.1 μg m(-)(3) (P=0.39) after adding 50% humidity. Intravenous tubing contributed 89% of cyclohexanone emissions. ACH were determined with access doors closed and open with means of 11.5 ± 1.7 and 44.1 ± 6.7 h(-1), respectively. Cyclohexanone emission rate increased from a mean of 102.2 μg h(-1) at 28(°C to 148.8 μg h(-1) (P<0.01) at 37 °C. Cyclohexanone was quantified in all incubator air samples containing plastic medical equipment. The concentration of cyclohexanone within the incubator was inversely related to ACH in the closed mode. The cyclohexanone concentration as well as the emission rate increased with higher temperature.

What is the incubation period for listeriosis?

PubMed Central

2013-01-01

Background Listeriosis is a foodborne infection with a low incidence but a high case fatality rate. Unlike common foodborne diseases, the incubation period can be long. The first incubation periods were documented during a large listeriosis outbreak published in 1987 by Linnan and al. in the New England Journal of Medicine (range: 3 days to 70 days). Data on the incubation period of listeriosis are scarce. Our study aim was to estimate precisely the incubation period of listeriosis using available data since 1987. Methods We estimated the incubation period of listeriosis using available published data and data from outbreak investigations carried out by the French National Institute for Public Health Surveillance. We selected cases with an incubation period calculated when a patient had a single exposure to a confirmed food source contaminated by Listeria monocytogenes. Results We identified 37 cases of invasive listeriosis (10 cases with central nervous system involvement (CNS cases), 15 bacteraemia cases and 12 pregnancy-associated cases) and 9 outbreaks with gastroenteritis. The overall median incubation period of invasive listeriosis was 8 days (range: 1–67 days) and differed significantly by clinical form of the disease (p<0.0001). A longer incubation period was observed for pregnancy-associated cases (median: 27.5 days; range: 17–67 days) than for CNS cases (median: 9 days; range: 1–14 days) and for bacteraemia cases (median: 2 days; range: 1–12 days). For gastroenteritis cases, the median incubation period was 24 hours with variation from 6 to 240 hours. Conclusions This information has implications for the investigation of food borne listeriosis outbreaks as the incubation period is used to determine the time period for which a food history is collected. We believe that, for listeriosis outbreaks, adapting the exposure window for documenting patients’ food histories in accordance with the clinical form of infection will facilitate the

Bioremediation of PAHs contaminated river sediment by an integrated approach with sequential injection of co-substrate and electron acceptor: Lab-scale study.

PubMed

Liu, Tongzhou; Zhang, Zhen; Dong, Wenyi; Wu, Xiaojing; Wang, Hongjie

2017-11-01

In this study, the feasibility of employing an integrated bioremediation approach in contaminated river sediment was evaluated. Sequential addition of co-substrate (acetate) and electron acceptor (NO 3 - ) in a two-phase treatment was capable of effectively removing polycyclic aromatic hydrocarbons (PAHs) in river sediment. The residual concentration of total PAHs decreased to far below effect range low (ERL) value within 91 days of incubation, at which concentration it could rarely pose biological impairment. The biodegradation of high molecular weight PAHs were found to be mainly occurred in the sediment treated with co-substrates (i.e. acetate or methanol), in which acetate was found to be more suitable for PAHs degradation. The role of co-substrates in influencing PAHs biodegradation was tentatively discussed herein. Additionally, the sediment odorous problem and blackish appearance were intensively addressed by NO 3 - injection. The results of this study demonstrated that integrating two or more approaches/processes would be a helpful option in sediment remediation. It can lead to a more effective remediation performance, handle multiple contamination issues, as well as mitigate environmental risks caused by one of the single methods. Copyright © 2017 Elsevier Ltd. All rights reserved.

Effects of nutrient loading on the carbon balance of coastal wetland sediments

USGS Publications Warehouse

Morris, J.T.; Bradley, P.M.

1999-01-01

Results of a 12-yr study in an oligotrophic South Carolina salt marsh demonstrate that soil respiration increased by 795 g C m-2 yr-1 and that carbon inventories decreased in sediments fertilized with nitrogen and phosphorus. Fertilized plots became net sources of carbon to the atmosphere, and sediment respiration continues in these plots at an accelerated pace. After 12 yr of treatment, soil macroorganic matter in the top 5 cm of sediment was 475 g C m-2 lower in fertilized plots than in controls, which is equivalent to a constant loss rate of 40 g C m-2 yr-1. It is not known whether soil carbon in fertilized plots has reached a new equilibrium or continues to decline. The increase in soil respiration in the fertilized plots was far greater than the loss of sediment organic matter, which indicates that the increase in soil respiration was largely due to an increase in primary production. Sediment respiration in laboratory incubations also demonstrated positive effects of nutrients. Thus, the results indicate that increased nutrient loading of oligotrophic wetlands can lead to an increased rate of sediment carbon turnover and a net loss of carbon from sediments.

Knowledge service decision making in business incubators based on the supernetwork model

NASA Astrophysics Data System (ADS)

Zhao, Liming; Zhang, Haihong; Wu, Wenqing

2017-08-01

As valuable resources for incubating firms, knowledge resources have received gradually increasing attention from all types of business incubators, and business incubators use a variety of knowledge services to stimulate rapid growth in incubating firms. Based on previous research, we generalize the knowledge transfer and knowledge networking services of two main forms of knowledge services and further divide knowledge transfer services into knowledge depth services and knowledge breadth services. Then, we construct the business incubators' knowledge supernetwork model, describe the evolution mechanism among heterogeneous agents and utilize a simulation to explore the performance variance of different business incubators' knowledge services. The simulation results show that knowledge stock increases faster when business incubators are able to provide knowledge services to more incubating firms and that the degree of discrepancy in the knowledge stock increases during the process of knowledge growth. Further, knowledge transfer services lead to greater differences in the knowledge structure, while knowledge networking services lead to smaller differences. Regarding the two types of knowledge transfer services, knowledge depth services are more conducive to knowledge growth than knowledge breadth services, but knowledge depth services lead to greater gaps in knowledge stocks and greater differences in knowledge structures. Overall, it is optimal for business incubators to select a single knowledge service or portfolio strategy based on the amount of time and energy expended on the two types of knowledge services.

Long-term fertilization alters the relative importance of nitrate reduction pathways in salt marsh sediments

NASA Astrophysics Data System (ADS)

Peng, Xuefeng; Ji, Qixing; Angell, John H.; Kearns, Patrick J.; Yang, Hannah J.; Bowen, Jennifer L.; Ward, Bess B.

2016-08-01

Salt marshes provide numerous valuable ecological services. In particular, nitrogen (N) removal in salt marsh sediments alleviates N loading to the coastal ocean. N removal reduces the threat of eutrophication caused by increased N inputs from anthropogenic sources. It is unclear, however, whether chronic nutrient overenrichment alters the capacity of salt marshes to remove anthropogenic N. To assess the effect of nutrient enrichment on N cycling in salt marsh sediments, we examined important N cycle pathways in experimental fertilization plots in a New England salt marsh. We determined rates of nitrification, denitrification, and dissimilatory nitrate reduction to ammonium (DNRA) using sediment slurry incubations with 15N labeled ammonium or nitrate tracers under oxic headspace (20% oxygen/80% helium). Nitrification and denitrification rates were more than tenfold higher in fertilized plots compared to control plots. By contrast, DNRA, which retains N in the system, was high in control plots but not detected in fertilized plots. The relative contribution of DNRA to total nitrate reduction largely depends on the carbon/nitrate ratio in the sediment. These results suggest that long-term fertilization shifts N cycling in salt marsh sediments from predominantly retention to removal.

Evaluation of three activated carbons for combined adsorption and biodegradation of PCBs in aquatic sediment.

PubMed

Mercier, Anne; Joulian, Catherine; Michel, Caroline; Auger, Pascal; Coulon, Stéphanie; Amalric, Laurence; Morlay, Catherine; Battaglia-Brunet, Fabienne

2014-08-01

Three commercial granular activated carbons (GACs) were studied at laboratory scale with a view to the combined adsorption and biodegradation of PCBs in aquatic sediment. The three GACs, with contrasting physico-chemical characteristics, all show a high adsorption of PCBs and are thus capable of reducing aqueous pollutant concentrations. After a one-month incubation with 'Aroclor 1242'-spiked sediment, the three GACs were each colonized by a multispecies biofilm, although with different amounts of attached bacterial biomass and significantly distinct genetic bacterial communities; interestingly, the highest bacterial biomass was attached to the microporous vegetable GAC. The multispecies biofilms developed on the three GACs were all predominantly composed of Proteobacteria, especially the β-, γ- and δ- subclasses, Chloroflexi and Acidobacteria, with genera previously found in environments containing PCBs or biphenyls, or able to perform cometabolic and direct PCB degradation. After an eight-month incubation under aerobic conditions, it was only the vegetable Picabiol GAC, with its low microporous volume, high total surface area and acidic property, that showed a significant (21%) reduction of tri- through penta-CB. Our results suggest that PCB bio-transformation by the bacterial community attached to the GAC is influenced by GAC's physico-chemical characteristics. Thus, a properly selected GAC could effectively be used to a) sequestrate and concentrate PCB from contaminated aquatic sediment and b) act as a support for efficient PCB degradation by an autochthonous bacterial biofilm. Copyright © 2014 Elsevier Ltd. All rights reserved.

Nitrification and denitrification in a midwestern stream containing high nitrate: In situ assessment using tracers in dome-shaped incubation chambers

USGS Publications Warehouse

Smith, R.L.; Böhlke, J.K.; Repert, D.A.; Hart, C.P.

2009-01-01

The extent to which in-stream processes alter or remove nutrient loads in agriculturally impacted streams is critically important to watershed function and the delivery of those loads to coastal waters. In this study, patch-scale rates of in-stream benthic processes were determined using large volume, open-bottom benthic incubation chambers in a nitrate-rich, first to third order stream draining an area dominated by tile-drained row-crop fields. The chambers were fitted with sampling/mixing ports, a volume compensation bladder, and porewater samplers. Incubations were conducted with added tracers (NaBr and either 15N[NO3-], 15N[NO2-], or 15N[NH4+]) for 24-44 h intervals and reaction rates were determined from changes in concentrations and isotopic compositions of nitrate, nitrite, ammonium and nitrogen gas. Overall, nitrate loss rates (220-3,560 ??mol N m-2 h-1) greatly exceeded corresponding denitrification rates (34-212 ??mol N m-2 h-1) and both of these rates were correlated with nitrate concentrations (90-1,330 ??M), which could be readily manipulated with addition experiments. Chamber estimates closely matched whole-stream rates of denitrification and nitrate loss using 15N. Chamber incubations with acetylene indicated that coupled nitrification/denitrification was not a major source of N2 production at ambient nitrate concentrations (175 ??M), but acetylene was not effective for assessing denitrification at higher nitrate concentrations (1,330 ??M). Ammonium uptake rates greatly exceeded nitrification rates, which were relatively low even with added ammonium (3.5 ??mol N m-2 h-1), though incubations with nitrite demonstrated that oxidation to nitrate exceeded reduction to nitrogen gas in the surface sediments by fivefold to tenfold. The chamber results confirmed earlier studies that denitrification was a substantial nitrate sink in this stream, but they also indicated that dissolved inorganic nitrogen (DIN) turnover rates greatly exceeded the rates of

Microbiome succession during ammonification in eelgrass bed sediments.

PubMed

Ettinger, Cassandra L; Williams, Susan L; Abbott, Jessica M; Stachowicz, John J; Eisen, Jonathan A

2017-01-01

Eelgrass ( Zostera marina ) is a marine angiosperm and foundation species that plays an important ecological role in primary production, food web support, and elemental cycling in coastal ecosystems. As with other plants, the microbial communities living in, on, and near eelgrass are thought to be intimately connected to the ecology and biology of eelgrass. Here we characterized the microbial communities in eelgrass sediments throughout an experiment to quantify the rate of ammonification, the first step in early remineralization of organic matter, also known as diagenesis, from plots at a field site in Bodega Bay, CA. Sediment was collected from 72 plots from a 15 month long field experiment in which eelgrass genotypic richness and relatedness were manipulated. In the laboratory, we placed sediment samples ( n  = 4 per plot) under a N 2 atmosphere, incubated them at in situ temperatures (15 °C) and sampled them initially and after 4, 7, 13, and 19 days to determine the ammonification rate. Comparative microbiome analysis using high throughput sequencing of 16S rRNA genes was performed on sediment samples taken initially and at seven, 13 and 19 days to characterize changes in the relative abundances of microbial taxa throughout ammonification. Within-sample diversity of the sediment microbial communities across all plots decreased after the initial timepoint using both richness based (observed number of OTUs, Chao1) and richness and evenness based diversity metrics (Shannon, Inverse Simpson). Additionally, microbial community composition changed across the different timepoints. Many of the observed changes in relative abundance of taxonomic groups between timepoints appeared driven by sulfur cycling with observed decreases in predicted sulfur reducers ( Desulfobacterales ) and corresponding increases in predicted sulfide oxidizers ( Thiotrichales ). None of these changes in composition or richness were associated with variation in ammonification rates. Our

Microbiome succession during ammonification in eelgrass bed sediments

PubMed Central

Ettinger, Cassandra L.; Williams, Susan L.; Abbott, Jessica M.; Stachowicz, John J.

2017-01-01

Background Eelgrass (Zostera marina) is a marine angiosperm and foundation species that plays an important ecological role in primary production, food web support, and elemental cycling in coastal ecosystems. As with other plants, the microbial communities living in, on, and near eelgrass are thought to be intimately connected to the ecology and biology of eelgrass. Here we characterized the microbial communities in eelgrass sediments throughout an experiment to quantify the rate of ammonification, the first step in early remineralization of organic matter, also known as diagenesis, from plots at a field site in Bodega Bay, CA. Methods Sediment was collected from 72 plots from a 15 month long field experiment in which eelgrass genotypic richness and relatedness were manipulated. In the laboratory, we placed sediment samples (n = 4 per plot) under a N2 atmosphere, incubated them at in situ temperatures (15 °C) and sampled them initially and after 4, 7, 13, and 19 days to determine the ammonification rate. Comparative microbiome analysis using high throughput sequencing of 16S rRNA genes was performed on sediment samples taken initially and at seven, 13 and 19 days to characterize changes in the relative abundances of microbial taxa throughout ammonification. Results Within-sample diversity of the sediment microbial communities across all plots decreased after the initial timepoint using both richness based (observed number of OTUs, Chao1) and richness and evenness based diversity metrics (Shannon, Inverse Simpson). Additionally, microbial community composition changed across the different timepoints. Many of the observed changes in relative abundance of taxonomic groups between timepoints appeared driven by sulfur cycling with observed decreases in predicted sulfur reducers (Desulfobacterales) and corresponding increases in predicted sulfide oxidizers (Thiotrichales). None of these changes in composition or richness were associated with variation in

Ambient-temperature incubation for the field detection of Escherichia coli in drinking water.

PubMed

Brown, J; Stauber, C; Murphy, J L; Khan, A; Mu, T; Elliott, M; Sobsey, M D

2011-04-01

 Escherichia coli is the pre-eminent microbiological indicator used to assess safety of drinking water globally. The cost and equipment requirements for processing samples by standard methods may limit the scale of water quality testing in technologically less developed countries and other resource-limited settings, however. We evaluate here the use of ambient-temperature incubation in detection of E. coli in drinking water samples as a potential cost-saving and convenience measure with applications in regions with high (>25°C) mean ambient temperatures.   This study includes data from three separate water quality assessments: two in Cambodia and one in the Dominican Republic. Field samples of household drinking water were processed in duplicate by membrane filtration (Cambodia), Petrifilm™ (Cambodia) or Colilert® (Dominican Republic) on selective media at both standard incubation temperature (35–37°C) and ambient temperature, using up to three dilutions and three replicates at each dilution. Matched sample sets were well correlated with 80% of samples (n = 1037) within risk-based microbial count strata (E. coli CFU 100 ml−1 counts of <1, 1–10, 11–100, 101–1000, >1000), and a pooled coefficient of variation of 17% (95% CI 15–20%) for paired sample sets across all methods.   These results suggest that ambient-temperature incubation of E. coli in at least some settings may yield sufficiently robust data for water safety monitoring where laboratory or incubator access is limited.

Incubation temperature impacts nestling growth and survival in an open-cup nesting passerine.

PubMed

Ospina, Emilie A; Merrill, Loren; Benson, Thomas J

2018-03-01

For oviparous species such as birds, conditions experienced while in the egg can have long-lasting effects on the individual. The impact of subtle changes in incubation temperature on nestling development, however, remains poorly understood, especially for open-cup nesting species with altricial young. To investigate how incubation temperature affects nestling development and survival in such species, we artificially incubated American robin ( Turdus migratorius ) eggs at 36.1°C ("Low" treatment) and 37.8°C ("High" treatment). Chicks were fostered to same-age nests upon hatching, and we measured mass, tarsus, and wing length of experimental nestlings and one randomly selected, naturally incubated ("Natural"), foster nest-mate on days 7 and 10 posthatch. We found significant effects of incubation temperature on incubation duration, growth, and survival, in which experimentally incubated nestlings had shorter incubation periods (10.22, 11.50, and 11.95 days for High, Low, and Natural eggs, respectively), and nestlings from the Low treatment were smaller and had reduced survival compared to High and Natural nestlings. These results highlight the importance of incubation conditions during embryonic development for incubation duration, somatic development, and survival. Moreover, these findings indicate that differences in incubation temperature within the natural range of variation can have important carryover effects on growth and survival in species with altricial young.

Cot-nursing versus incubator care for preterm infants.

PubMed

Gray, Peter H; Flenady, Vicki

2011-08-10

Preterm infants are usually nursed in incubators, but cot-nursing may provide an alternative. While there may be benefits of nursing preterm infants in open cots, there may be potential risks such as nosocomial infection caused by more handling due to easier access. To assess effects of cot-nursing versus incubator care on temperature control and weight gain in preterm infants. The standard search strategy of the Cochrane Neonatal Review Group was used. This included searches of electronic databases including the Cochrane Central Register of Controlled Trials (The Cochrane Library), Oxford Database of Perinatal Trials, MEDLINE, CINAHL, and EMBASE, as well as previous reviews including cross references through November 2009. All trials using random or quasi-random patient allocation in which infants receiving care in standard newborn cots were compared to infants managed in a conventional air heated incubator. The authors independently assessed trial quality and extracted data for the primary outcomes of temperature control and weight gain. Meta-analysis was conducted using a fixed-effect model. Eleven potential studies were identified of which five, involving 247 infants, were included in this review. When compared to incubator care, cot-nursing resulted in no significant difference in mean body temperature (MD 0.02 degrees C; 95% CI -0.02 to 0.07, four trials), though the one trial that reported on episodes of hyperthermia found this to be statistically more common in the cot-nursing group (RR 1.48; 95% CI 1.04 to 2.09). There were no statistically significant differences in weight gain. In the cot-nursing group, fewer infants were breast fed on discharge (typical RR 0.74; 95% CI 0.48 to 1.14, three trials, 150 infants) and fewer infants died prior to hospital discharge (typical RR 0.59, 95% CI 0.28 to 1.25, four trials, 235 infants) but these results failed to reach statistical significance. The comparison of cot-nursing using a heated water-filled mattress

Uptake pathway for Ag bioaccumulation in three benthic invertebrates exposed to contaminated sediments

USGS Publications Warehouse

Yoo, H.; Lee, J.-S.; Lee, B.-G.; Lee, I.T.; Schlekat, C.E.; Koh, C.-H.; Luoma, S.N.

2004-01-01

We exposed 3 benthic invertebrates, the clam Macoma balthica, the polychaete Neanthes arenaceodentata and the amphipod Leptocheirus plumulosus, to Ag-contaminated sediments to evaluate the relative importance of various uptake routes (sediments, porewater or overlying water, and supplementary food) for Ag bioaccumulation. Silver bioaccumulation was evaluated at 4 levels of sediment Ag (0.1, 0,3, 1,2 and 3.3 ??mol Ag g-1) and 2 levels of acid-volatile sulfide (AVS), <0.5 or ???40 ??mol g-1, and compared among food treatments with or without Ag contamination, or with different food rations. L. plumulosus were incubated for 35 d in the Ag-contaminated sediments after 3 mo of Ag-sediment equilibration, and M. balthica and N. arenaceodentata for 19 d after 5 mo equilibration. Ag bioaccumulation in the 3 organisms was significantly correlated with 1N HCl-extractable Ag concentrations (Ag-SEM: simultaneously extracted Ag with AVS) in sediments. The Ag concentrations in porewater and overlying water were greatest in the sediments with least AVS, consistent with previous studies. Nevertheless, the amphipod and clam exposed to oxic sediments (<0.5 ??mol AVS g-1) accumulated amounts of Ag similar to those accumulated by organisms exposed to anoxic sediments (???40 ??mol AVS g-1), when Ag-SEM levels were comparable. The dissolved Ag source was important for bioaccumulation in the polychaete N. arenaceodentata. Amphipods fed Ag-contaminated food contained ???1.8-fold more tissue Ag concentrations than those fed uncontaminated food. As suggested in kinetic (DYMBAM) modeling studies, ingestion of contaminated sediments and food were the principle routes of Ag bioaccumulation by the benthic invertebrates during chronic exposure, but the relative importance of each uptake route differed among species.

Effects of maternal dietary manganese and incubation temperature on hatchability, antioxidant status, and expression of heat shock proteins in chick embryos.

PubMed

Zhu, Y W; Lu, L; Li, W X; Zhang, L Y; Ji, C; Lin, X; Liu, H C; Odle, J; Luo, X G

2015-12-01

To investigate whether supplementing manganese (Mn) to the maternal diet could reduce the deleterious effect of heat stress on the developing embryo, the hatchability, antioxidant status, and expression of heat shock proteins (HSP) were evaluated in chick embryos under normal and high incubation temperatures. A completely randomized design ( = 6) with 2 maternal dietary Mn treatments (unsupplemented control basal diet versus the basal diet + 120 mg Mn/kg as inorganic Mn) × 2 incubation temperatures (normal, 37.8°C, versus high, 39.0°C) was used. High incubation temperature did not affect ( > 0.19) hatchability and embryo mortality and development but did increase ( < 0.05) activities of heart manganese superoxide dismutase (MnSOD) and liver copper zinc superoxide dismutase and liver MnSOD mRNA and protein levels in embryos. High incubation temperature also decreased ( < 0.003) HSP70 protein level in the heart but had no effects ( > 0.07) in the liver of embryos. Maternal diet with Mn supplementation not only increased ( < 0.05) the hatchability and Mn content ( < 0.001) in the yolk and embryonic tissues and the activity of MnSOD in the heart ( < 0.004) as well as relative liver weight ( < 0.05) under normal incubation temperature but also decreased ( ≤ 0.05) embryo mortality and HSP90 mRNA level in the liver and heart of embryos. Furthermore, under high incubation temperature, maternal diet Mn supplementation increased ( < 0.002) MnSOD protein expression in the liver of embryos but had no effect ( > 0.43) under normal incubation temperature. These results indicated that high incubation temperature induced self-protective responses of chick embryos with a modification of antioxidant status and a depression of HSP70 protein level. Maternal dietary supplementation of Mn could improve the hatchability as well as antioxidant ability to protect against heat challenge in embryos during incubation.

Incubation temperature effects on hatchling performance in the loggerhead sea turtle (Caretta caretta).

PubMed

Fisher, Leah R; Godfrey, Matthew H; Owens, David W

2014-01-01

Incubation temperature has significant developmental effects on oviparous animals, including affecting sexual differentiation for several species. Incubation temperature also affects traits that can influence survival, a theory that is verified in this study for the Northwest Atlantic loggerhead sea turtle (Caretta caretta). We conducted controlled laboratory incubations and experiments to test for an effect of incubation temperature on performance of loggerhead hatchlings. Sixty-eight hatchlings were tested in 2011, and 31 in 2012, produced from eggs incubated at 11 different constant temperatures ranging from 27°C to 33°C. Following their emergence from the eggs, we tested righting response, crawling speed, and conducted a 24-hour long swim test. The results support previous studies on sea turtle hatchlings, with an effect of incubation temperature seen on survivorship, righting response time, crawling speed, change in crawl speed, and overall swim activity, and with hatchlings incubated at 27°C showing decreased locomotor abilities. No hatchlings survived to be tested in both years when incubated at 32°C and above. Differences in survivorship of hatchlings incubated at high temperatures are important in light of projected higher sand temperatures due to climate change, and could indicate increased mortality from incubation temperature effects.

Incubation Temperature Effects on Hatchling Performance in the Loggerhead Sea Turtle (Caretta caretta)

PubMed Central

Fisher, Leah R.; Godfrey, Matthew H.; Owens, David W.

2014-01-01

Incubation temperature has significant developmental effects on oviparous animals, including affecting sexual differentiation for several species. Incubation temperature also affects traits that can influence survival, a theory that is verified in this study for the Northwest Atlantic loggerhead sea turtle (Caretta caretta). We conducted controlled laboratory incubations and experiments to test for an effect of incubation temperature on performance of loggerhead hatchlings. Sixty-eight hatchlings were tested in 2011, and 31 in 2012, produced from eggs incubated at 11 different constant temperatures ranging from 27°C to 33°C. Following their emergence from the eggs, we tested righting response, crawling speed, and conducted a 24-hour long swim test. The results support previous studies on sea turtle hatchlings, with an effect of incubation temperature seen on survivorship, righting response time, crawling speed, change in crawl speed, and overall swim activity, and with hatchlings incubated at 27°C showing decreased locomotor abilities. No hatchlings survived to be tested in both years when incubated at 32°C and above. Differences in survivorship of hatchlings incubated at high temperatures are important in light of projected higher sand temperatures due to climate change, and could indicate increased mortality from incubation temperature effects. PMID:25517114

Assessing the role of bed sediments in the persistence of red mud pollution in a shallow lake (Kinghorn Loch, UK).

PubMed

Olszewska, Justyna P; Heal, Kate V; Winfield, Ian J; Eades, Lorna J; Spears, Bryan M

2017-10-15

Red mud is a by-product of alumina production. Little is known about the long-term fate of red mud constituents in fresh waters or of the processes regulating recovery of fresh waters following pollution control. In 1983, red mud leachate was diverted away from Kinghorn Loch, UK, after many years of polluting this shallow and monomictic lake. We hypothesised that the redox-sensitive constituents of red mud leachate, phosphorus (P), arsenic (As) and vanadium (V), would persist in the Kinghorn Loch for many years following pollution control as a result of cycling between the lake bed sediment and the overlying water column. To test this hypothesis, we conducted a 12-month field campaign in Kinghorn Loch between May 2012 and April 2013 to quantify the seasonal cycling of P, As, and V in relation to environmental conditions (e.g., dissolved oxygen (DO) concentration, pH, redox chemistry and temperature) in the lake surface and bottom waters. To confirm the mechanisms for P, As and V release, a sediment core incubation experiment was conducted using lake sediment sampled in July 2012, in which DO concentrations were manipulated to create either oxic or anoxic conditions similar to the bed conditions found in the lake. The effects on P, As, and V concentrations and species in the water column were measured daily over an eight-day incubation period. Phosphate (PO 4 -P) and dissolved As concentrations were significantly higher in the bottom waters (75.9 ± 30.2 μg L -1 and 23.5 ± 1.83 μg L -1 , respectively) than in the surface waters (12.9 ± 1.50 μg L -1 and 14.1 ± 2.20 μg L -1 , respectively) in Kinghorn Loch. Sediment release of As and P under anoxic conditions was confirmed by the incubation experiment and by the significant negative correlations between DO and P and As concentrations in the bottom waters of the lake. In contrast, the highest dissolved V concentrations occurred in the bottom waters of Kinghorn Loch under oxic conditions (15.0�

National Security Technology Incubator Business Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

None, None

This document contains a business plan for the National Security Technology Incubator (NSTI), developed as part of the National Security Preparedness Project (NSPP) and performed under a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This business plan describes key features of the NSTI, including the vision and mission, organizational structure and staffing, services, evaluation criteria, marketing strategies, client processes, a budget, incubator evaluation criteria, and a development schedule. The purpose of the NSPP is to promote national security technologies through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with nationalmore » security technology applications by nurturing them through critical stages of early development. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety, security, and protection of the homeland. The NSTI is operated and managed by the Arrowhead Center, responsible for leading the economic development mission of New Mexico State University (NMSU). The Arrowhead Center will recruit business with applications for national security technologies recruited for the NSTI program. The Arrowhead Center and its strategic partners will provide business incubation services, including hands-on mentoring in general business matters, marketing, proposal writing, management, accounting, and finance. Additionally, networking opportunities and technology development assistance will be provided.« less

Physical properties of sediments from the JAPEX/JNOC/GSC Mallik 2L-38 gas hydrate research well

USGS Publications Warehouse

Winters, W.J.

1999-01-01

A 1150 m deep gas hydrate research well was drilled in the Canadian Arctic in February and March 1998 to investigate the interaction between the presence of gas hydrate and the natural conditions presented by the host sediments. Profiles of the following measured and derived properties are presented from that investigation: water content, sediment wet bulk density, grain size, porosity, gas hydrate quantity, and salinity. These data indicate that the greatest concentration of gas hydrate is located within sand and gravel deposits between 897 m and 922 m. American Society for Testing and Materials 1997: Standard test method for specific gravity of soil solids by gas pycnometer D 5550-94; in American Society for Testing and Materials, Annual Book of ASTM Standards, v. 04.09, Soil and Rock, West Conshohocken, Pennsylvania, p. 380-383.

Electromagnetic fields produced by incubators influence heart rate variability in newborns.

PubMed

Bellieni, C V; Acampa, M; Maffei, M; Maffei, S; Perrone, S; Pinto, I; Stacchini, N; Buonocore, G

2008-07-01

Incubators are largely used to preserve preterm and sick babies from postnatal stressors, but their motors produce high electromagnetic fields (EMFs). Newborns are chronically exposed to these EMFs, but no studies about their effects on the fragile developing neonatal structure exist. To verify whether the exposure to incubator motor electric power may alter autonomous nervous system activity in newborns. Heart rate variability (HRV) of 43 newborns in incubators was studied. The study group comprised 27 newborns whose HRV was studied throughout three 5-minute periods: with incubator motor on, off, and on again, respectively. Mean HRV values obtained during each period were compared. The control group comprised 16 newborns with constantly unrecordable EMF and exposed to changes in background noise, similar to those provoked by the incubator motor. Mean (SD) total power and the high-frequency (HF) component of HRV increased significantly (from 87.1 (76.2) ms2 to 183.6 (168.5) ms2) and the mean low-frequency (LF)/HF ratio decreased significantly (from 2.0 (0.5) to 1.5 (0.6)) when the incubator motor was turned off. Basal values (HF = 107.1 (118.1) ms2 and LF/HF = 1.9 (0.6)) were restored when incubators were turned on again. The LF spectral component of HRV showed a statistically significant change only in the second phase of the experiment. Changes in background noise did not provoke any significant change in HRV. EMFs produced by incubators influence newborns' HRV, showing an influence on their autonomous nervous system. More research is needed to assess possible long-term consequences, since premature newborns may be exposed to these high EMFs for months.

Oil Biodegradation and Oil-Degrading Microbial Populations in Marsh Sediments Impacted by Oil from the Deepwater Horizon Well Blowout.

PubMed

Atlas, Ronald M; Stoeckel, Donald M; Faith, Seth A; Minard-Smith, Angela; Thorn, Jonathan R; Benotti, Mark J

2015-07-21

To study hydrocarbon biodegradation in marsh sediments impacted by Macondo oil from the Deepwater Horizon well blowout, we collected sediment cores 18-36 months after the accident at the marshes in Bay Jimmy (Upper Barataria Bay), Louisiana, United States. The highest concentrations of oil were found in the top 2 cm of sediment nearest the waterline at the shorelines known to have been heavily oiled. Although petroleum hydrocarbons were detectable, Macondo oil could not be identified below 8 cm in 19 of the 20 surveyed sites. At the one site where oil was detected below 8 cm, concentrations were low. Residual Macondo oil was already highly weathered at the start of the study, and the concentrations of individual saturated hydrocarbons and polycyclic aromatic hydrocarbons continued to decrease over the course of the study due to biodegradation. Desulfococcus oleovorans, Marinobacter hydrocarbonoclasticus, Mycobacterium vanbaalenii, and related mycobacteria were the most abundant oil-degrading microorganisms detected in the top 2 cm at the oiled sites. Relative populations of these taxa declined as oil concentrations declined. The diversity of the microbial community was low at heavily oiled sites compared to that of the unoiled reference sites. As oil concentrations decreased over time, microbial diversity increased and approached the diversity levels of the reference sites. These trends show that the oil continues to be biodegraded, and microbial diversity continues to increase, indicating ongoing overall ecological recovery.

Factors related to the artificial incubation of wild bird eggs

USGS Publications Warehouse

Klimstra, Jon D.; Stebbins, Katherine R.; Heinz, Gary H.; Hoffman, David J.; Kondrad, Shannon R.

2009-01-01

Attempts to artificially incubate the eggs of wild birds have failed in many respects in duplicating the success of natural incubation. As part of a larger study we had the opportunity to artificially incubate the eggs of 22 species of birds (three domestic and 19 wild species). We report the successes and failures associated with artificial incubation of these eggs. Moisture loss varied widely, not only for Orders of birds but for similar species within an Order. Overall hatching success and success through to 90% of incubation varied for different Orders and for similar species. Humidity and temperature are critical elements in the artificial incubation of wild bird eggs and must be closely monitored throughout incubation to ensure the best possible chance of hatching. Even when these elements are addressed, artificial incubation still can not duplicate the success of incubation by the parent.

Crushing of Subglacial Lake Sediment as a Source of Bio-utilisable Gases.

NASA Astrophysics Data System (ADS)

Gill Olivas, B.; Telling, J.; Michaud, A. B.; Skidmore, M. L.; Priscu, J. C.; Tranter, M.

2017-12-01

Recent research has shown microbial ecosystems exist under glaciers and ice sheets. The sources of energy to support these ecosystems are still not fully understood, particularly beneath the Antarctic Ice Sheet, where direct access to the atmosphere and in-washed organic matter and oxidising agents does not occur. Hence, sub-ice sheet energy sources are restricted to those in subglacial environments, except for ice-margin environments. This study focuses on sediments from Subglacial Lake Whillans (SLW), the first subglacial lake to be directly and cleanly sampled. Sediment from three depths in a shallow core extracted from SLW were used to assess the possible energy contributions from mechanochemical reactions to this subglacial ecosystem. To do this, the samples were crushed under an anoxic atmosphere using a ball mill. The sediments were then transferred into serum bottles under anoxic conditions. They were wetted and the headspace gas was subsequently sampled and analysed during a 40 day incubation. Results show the release of substantial amounts of hydrogen, which could potentially serve as an abiotic source of energy to microbes, in particular, methanogenic archaea. Significant amounts of short chain hydrocarbons (including methane and ethylene), possibly from the reactivation of ancient organic carbon, were also observed. Crushed samples showed a significant concentration of hydrogen peroxide produced on contact with water, as well as significant amounts of Si radicals, showing comminution of these sediments unlocks the potential for a wide range of redox conditions and reactions to develop within glacially eroded sediment under ice. This in turn provides a previously overlooked source of nutrients and energy for microbes to utilise.

Incubation behaviours of oviraptorosaur dinosaurs in relation to body size.

PubMed

Tanaka, Kohei; Zelenitsky, Darla K; Lü, Junchang; DeBuhr, Christopher L; Yi, Laiping; Jia, Songhai; Ding, Fang; Xia, Mengli; Liu, Di; Shen, Caizhi; Chen, Rongjun

2018-05-01

Most birds sit on their eggs during incubation, a behaviour that likely evolved among non-avian dinosaurs. Several 'brooding' specimens of smaller species of oviraptorosaurs and troodontids reveal these non-avian theropods sat on their eggs, although little is known of incubation behaviour in larger theropod species. Here we examine egg clutches over a large body size range of oviraptorosaurs in order to understand the potential effect of body size on incubation behaviour. Eggshell porosity indicates that the eggs of all oviraptorosaurs were exposed in the nest, similar to brooding birds. Although all oviraptorosaur clutches consist of radially arranged eggs in a ring configuration, clutch morphology varies in that the central opening is small or absent in the smallest species, becomes significantly larger in larger species, and occupies most of the nest area in giant species. Our results suggest that the smallest oviraptorosaurs probably sat directly on the eggs, whereas with increasing body size more weight was likely carried by the central opening, reducing or eliminating the load on the eggs and still potentially allowing for some contact during incubation in giant species. This adaptation, not seen in birds, appears to remove the body size constraints of incubation behaviour in giant oviraptorosaurs. © 2018 The Author(s).

Sediment Budgeting in Dam-Affected Rivers: Assessing the Influence of Damming, Tributaries, and Alluvial Valley Sediment Storage on Sediment Regimes

NASA Astrophysics Data System (ADS)

Wilcox, A. C.; Dekker, F. J.; Riebe, C. S.

2014-12-01

Although sediment supply is recognized as a fundamental driver of fluvial processes, measuring how dams affect sediment regimes and incorporating such knowledge into management strategies remains challenging. To determine the influences of damming, tributary supply, and valley morphology and sediment storage on downstream sediment supply in a dryland river, the Bill Williams River (BWR) in western Arizona, we measured basin erosion rates using cosmogenic nuclide analysis of beryllium-10 (10Be) at sites upstream and downstream of a dam along the BWR, as well as from tributaries downstream of the dam. Riverbed sediment mixing calculations were used to test if the dam, which blocks sediment supply from the upper 85% of the basin's drainage area, increases the proportion of tributary sediment to residual upstream sediment in mainstem samples downstream of the dam. Erosion rates in the BWR watershed are more than twice as large in the upper catchment (136 t km-2 yr-1) than in tributaries downstream of Alamo Dam (61 t km-2 yr-1). Tributaries downstream of the dam have little influence on mainstem sediment dynamics. The effect of the dam on reducing sediment supply is limited, however, because of the presence of large alluvial valleys along the mainstem BWR downstream of the dam that store substantial sediment and mitigate supply reductions from the upper watershed. These inferences, from our 10Be derived erosion rates and mixing calculations, are consistent with field observations of downstream changes in bed material size, which suggest that sediment-deficit conditions are restricted to a 10 km reach downstream of the dam, and limited reservoir bathymetry data. Many studies have suggested that tributary sediment inputs downstream of dams play a key role in mitigating dam-induced sediment deficits, but here we show that in a dryland river with ephemeral tributaries, sediment stored in alluvial valleys can also play a key role and in some cases trumps the role of

The incubation period of cholera: a systematic review.

PubMed

Azman, Andrew S; Rudolph, Kara E; Cummings, Derek A T; Lessler, Justin

2013-05-01

Recent large cholera outbreaks highlight the need for improved understanding of the pathogenesis and epidemiology of cholera. The incubation period of cholera has important implications for clinical and public health decision-making, yet statements of the incubation period of cholera are often imprecise. Here we characterize the distribution of cholera's incubation period. We conducted a systematic review of the literature for statements of the incubation period of cholera and data that might aid in its estimation. We extracted individual-level data, parametrically estimated the distribution of toxigenic cholera's incubation period, and evaluated evidence for differences between strains. The incubation period did not differ by a clinically significant margin between strains (except O1 El Tor Ogawa). We estimate the median incubation period of toxigenic cholera to be 1.4 days (95% CI, 1.3-1.6). Five percent of cholera cases will develop symptoms by 0.5 days (95% CI 0.4-0.5), and 95% by 4.4 days (95% CI 3.9-5.0) after infection. We recommend that cholera investigations use a recall period of at least five days to capture relevant exposures; significantly longer than recent risk factor studies from the Haitian epidemic. This characterization of cholera's incubation period can help improve clinical and public health practice and advance epidemiologic research. Copyright © 2012 The British Infection Association. Published by Elsevier Ltd. All rights reserved.

Sitting in the sun: Nest microhabitat affects incubation temperatures in seabirds.

PubMed

Hart, Lorinda A; Downs, Colleen T; Brown, Mark

2016-08-01

During incubation parent birds are committed to a nest site and endure a range of ambient conditions while regulating egg temperatures. Using artificial eggs containing temperature loggers alongside ambient temperature (Ta) controls, incubation profiles were determined for four tropical seabird species at different nest site locations. Camera traps were used for ad-hoc behavioural incubation observations. Eggs experienced a range of temperatures during incubation and varied significantly between species and in some cases between different microhabitats within a species. Such variation has important consequences in the phenotypic expression of both physical and physiological traits of chicks, and ultimately species fitness. Exposed nest sites were more strongly correlated to Tas. Camera traps highlighted different incubation strategies employed by these species that could be related to trade-offs in predator defence, feeding habits, and temperature regulation of eggs. This study provides evidence that species with similar breeding habits could be affected by environmental stressors in similar ways and that the differences shown in nest site selection could negate some of these effects. We propose that habitats providing suitable nest microclimates will become increasingly important for the successful breeding of seabird species, particularly under predicted climate change scenarios. Copyright © 2016 Elsevier Ltd. All rights reserved.

Wood and Sediment Dynamics in River Corridors

NASA Astrophysics Data System (ADS)

Wohl, E.; Scott, D.

2015-12-01

Large wood along rivers influences entrainment, transport, and storage of mineral sediment and particulate organic matter. We review how wood alters sediment dynamics and explore patterns among volumes of instream wood, sediment storage, and residual pools for dispersed pieces of wood, logjams, and beaver dams. We hypothesized that: volume of sediment per unit area of channel stored in association with wood is inversely proportional to drainage area; the form of sediment storage changes downstream; sediment storage correlates most strongly with wood load; and volume of sediment stored behind beaver dams correlates with pond area. Lack of data from larger drainage areas limits tests of these hypotheses, but analyses suggest a negative correlation between sediment volume and drainage area and a positive correlation between wood and sediment volume. The form of sediment storage in relation to wood changes downstream, with wedges of sediment upstream from jammed steps most prevalent in small, steep channels and more dispersed sediment storage in lower gradient channels. Use of a published relation between sediment volume, channel width, and gradient predicted about half of the variation in sediment stored upstream from jammed steps. Sediment volume correlates well with beaver pond area. Historically more abundant instream wood and beaver populations likely equated to greater sediment storage within river corridors. This review of the existing literature on wood and sediment dynamics highlights the lack of studies on larger rivers.

Characterizing the nutritional strategy of incubating king eiders Somateria spectabilis in northern Alaska

USGS Publications Warehouse

Bentzen, R.L.; Powell, A.N.; Williams, T.D.; Kitaysky, A.S.

2008-01-01

We measured plasma concentrations of variables associated with lipid metabolism (free fatty acids, glycerol, triglyceride, and ??- hydroxybutyrate), protein metabolism (uric acid), and baseline corticosterone to characterize the nutritional state of incubating king eiders Somateria spectabilis and relate this to incubation constancy at two sites, Kuparuk and Teshekpuk, in northern Alaska. King eiders at both sites appeared to employ a partial-income incubation strategy, relying on both endogenous and exogenous energy resources. Females maintained high invariant levels of free fatty acids, ??-hydroxybutyrate, and glycerol throughout incubation, indicating that fat reserves were a major energy source, and not completely depleted during incubation. Similarly, uric acid did not increase, suggesting effective protein sparing or protein ingestion and adequate lipid reserves throughout incubation. Baseline corticosterone and triglyceride levels increased during incubation, indicative of an increase in foraging during late stages of incubation. Incubating females at Kuparuk had higher triglyceride concentrations but also had higher ??-hydroxybutyrate concentrations than females at Teshekpuk. This dichotomy may reflect a short-term signal of feeding overlaying the longer-term signal of reliance on endogenous lipid reserves due to higher food intake yet higher metabolic costs at Kuparuk because of its colder environment. Incubation constancy was not correlated with plasma concentrations of lipid or protein metabolites. ?? 2008 The Authors.

Tenant Recruitment and Support Processes in Sustainability-Profiled Business Incubators

ERIC Educational Resources Information Center

Bank, Natasha; Kanda, Wisdom

2016-01-01

Recruitment and support processes in sustainability-profiled incubators have received little research attention. The article addresses this knowledge gap in an empirical investigation of three sustainability-oriented incubators in Sweden, Finland and Germany. The data are based on interviews with managers, stakeholders and tenants in Green Tech…

Biogeochemical cycling of permeable sediments in a shelf sea environment: Celtic Sea, a seasonal study.