Science.gov

Sample records for in-well sediment incubators

  1. In-Well Sediment Incubators to Evaluate Microbial Community Stability and Dynamics following Bioimmobilization of Uranium

    SciTech Connect

    Baldwin, Brett R.; Peacock, Aaron D.; Gan, M.; Resch, Charles T.; Arntzen, Evan V.; Smithgall, A. N.; Pfiffner, S.; Freifeld, Barry M.; White, D. C.; Long, Philip E.

    2009-09-23

    An in-situ incubation device (ISI) was developed in order to investigate the stability and dynamics of sediment associated microbial communities to prevailing subsurface oxidizing or reducing conditions. Here we describe the use of these devices at the Old Rifle Uranium Mill Tailings Remedial Action (UMTRA) site. During the 7 month deployment oxidized Rifle aquifer background sediments (RABS) were deployed in previously biostimulated wells under iron reducing conditions, cell densities of known iron reducing bacteria including Geobacteraceae increased significantly showing the microbial community response to local subsurface conditions. PLFA profiles of RABS following in situ deployment were strikingly similar to those of adjacent sediment cores suggesting ISI results could be extrapolated to the native material of the test plots. Results for ISI deployed reduced sediments showed only slight changes in community composition and pointed toward the ability of the ISIs to monitor microbial community stability and response to subsurface conditions.

  2. Identification of Methanogens and Controls on Methane Production in Incubations of Natural Methane Seep Sediments

    NASA Astrophysics Data System (ADS)

    Kevorkian, R.; Lloyd, K. G.

    2014-12-01

    Methane, the most abundant hydrocarbon in Earth's atmosphere, is produced in large quantities in sediments underlying the world's oceans. Very little of this methane makes it to surface sediments as it is consumed by Anaerobic Methanotrophs (ANME's) in consortia with Sulfate Reducing Bacteria (SRB). Less is known about which organisms are responsible for methane production in marine sediments, and whether that production is under thermodynamic control based on hydrogen concentrations. Although ANMEs have been found to be active in methanogenic sediments and incubations, it is currently unknown whether they are able to grow in methanogenic conditions. We demonstrated with bottle incubations of methane seep sediment taken from Cape Lookout Bight, NC, that hydrogen controls methane production. While sulfate was present the hydrogen concentration was maintained at below 2 nM. Only after the depletion of sulfate allowed hydrogen concentrations to rise above 5 nM did we see production of methane. The same sediments when spiked with methane gas demonstrated its complete removal while sulfate reduction occurred. Quantitative PCR shows that ANME-2 and ANME-1 increase in 16S copy number as methane increases. Total direct cell counts demonstrate a decline in cells with the decrease of sulfate until a recovery corresponding with production of methane. Our results strongly suggest that hydrogen concentrations influence what metabolic processes can occur in marine sediments, and that ANME-1 and ANME-2 are able to grow on the energy provided from methane production.

  3. Coral reef sediment dissolution: Insights from chamber incubations around the globe

    NASA Astrophysics Data System (ADS)

    Cyronak, T.; Andersson, A. J.; Eyre, B.

    2016-02-01

    Ocean acidification (OA) is expected to negatively affect the calcium carbonate (CaCO3) budget of coral reefs by decreasing calcification and increasing CaCO3 dissolution rates. Sediments represent the largest reservoir of CaCO3 in coral reefs and form important habitats above and below the hide tide mark. Results from in situ benthic incubations at different coral reef locations around the world (Australia, Tahiti, Bermuda, Cook Islands, and Hawaii) reveal that there is a general trend between bulk seawater aragonite saturation state (Ωar) and net CaCO3 sediment dissolution rates. Experimental incubations also indicate that the ratio of production to respiration (P/R) in the sediments plays a significant role in CaCO3 dissolution, with high P/R ratios potentially offsetting the effects of human induced OA. This is most likely due to benthic microalgae photosynthesizing and consuming CO2, which produces conditions more favourable for CaCO3 precipitation in sediment pore waters. Despite any interactions with benthic organic metabolism, sediment dissolution could be an order of magnitude more sensitive to OA compared to the process of biogenic calcification. Increases in CaCO3 sediment dissolution under predicted CO2 emissions could shift the net ecosystem calcification (NEC) of coral reefs from net CaCO3 precipitating to net dissolving by the end of this century.

  4. Best Practices for In-Situ Sediment-Water Incubations with Benthic Landers

    NASA Astrophysics Data System (ADS)

    Tengberg, Anders; Kononets, Mikhail; Hall, Per; Nilsson, Madeleine; Ekeroth, Nils

    2017-04-01

    Biological, chemical, physical and geological processes that take place at the seafloor are crucial in influencing and regulating many aquatic environments. One method to estimate exchange rates, fluxes, between the sediment and the overlying water is in-situ sediment-water incubations using autonomous chamber landers. As for all field sampling and measurements best practices methods are needed to obtain high quality data. With experiences form many years usage of the Gothenburg autonomous bottom lander systems this presentation will describe some of the experimental work that has been done with focus on quality control and data evaluation methods.

  5. Predicting the denitrification capacity of sandy aquifers from shorter-term incubation experiments and sediment properties

    NASA Astrophysics Data System (ADS)

    Eschenbach, W.; Well, R.

    2013-02-01

    Knowledge about the spatial variability of denitrification rates and the lifetime of denitrification in nitrate-contaminated aquifers is crucial to predict the development of groundwater quality. Therefore, regression models were derived to estimate the measured cumulative denitrification of aquifer sediments after one year of incubation from initial denitrification rates and several sediment parameters, namely total sulphur, total organic carbon, extractable sulphate, extractable dissolved organic carbon, hot water soluble organic carbon and potassium permanganate labile organic carbon. For this purpose, we incubated aquifer material from two sandy Pleistocene aquifers in Northern Germany under anaerobic conditions in the laboratory using the 15N tracer technique. The measured amount of denitrification ranged from 0.19 to 56.2 mg N kg-1 yr-1. The laboratory incubations exhibited high differences between non-sulphidic and sulphidic aquifer material in both aquifers with respect to all investigated sediment parameters. Denitrification rates and the estimated lifetime of denitrification were higher in the sulphidic samples. For these samples, the cumulative denitrification measured during one year of incubation (Dcum(365)) exhibited distinct linear regressions with the stock of reduced compounds in the investigated aquifer samples. Dcum(365) was predictable from sediment variables within a range of uncertainty of 0.5 to 2 (calculated Dcum(365)/measured Dcum(365)) for aquifer material with a Dcum(365) > 20 mg N kg-1 yr-1. Predictions were poor for samples with lower Dcum(365), such as samples from the NO3- bearing groundwater zone, which includes the non-sulphidic samples, from the upper part of both aquifers where denitrification is not sufficient to protect groundwater from anthropogenic NO3- input. Calculation of Dcum(365) from initial denitrification rates was only successful for samples from the NO3--bearing zone, whereas a lag-phase of denitrification in samples

  6. Predicting long-term denitrification capacity of sandy aquifers from incubation experiments and sediment properties

    NASA Astrophysics Data System (ADS)

    Eschenbach, W.; Well, R.

    2012-07-01

    Knowledge about the spatial variability of denitrification rates and the lifetime of denitrification in nitrate-contaminated aquifers is crucial to predict the development of groundwater quality. Therefore, regression models were derived to estimate the measured denitrification capacity of incubated aquifer sediments from initial denitrification rates and several sediment parameters, namely total sulphur, total organic carbon, extractable sulfate, extractable dissolved organic carbon, hot water soluble organic carbon and potassium permanganate labile organic carbon. For this purpose, we incubated aquifer material from two sandy Pleistocene aquifers in Northern Germany under anaerobic conditions in the laboratory using the 15N tracer technique. The measured long-term denitrification capacities ranged from 0.18 to 56.2 mg N kg-1 yr-1. The laboratory incubations exhibited high differences between non-sulphidic and sulphidic aquifer material in both aquifers with respect to all investigated sediment parameters. Denitrification rates and the estimated lifetime of denitrification were higher in the sulphidic samples. Denitrification capacity measured during one year of incubation (Dcap) was predictable from sediment variables within a range of uncertainty of 0.5 to 2 (calculated Dcap/measured Dcap) for aquifer material with a Dcap > 20 mg N kg-1 yr-1. Predictions were poor for samples with lower Dcap like samples from the NO3--bearing groundwater zone, which includes the non-sulphidic samples, from the upper part of both aquifers where Dcap is not sufficient to protect groundwater from anthropogenic NO3- input. Calculation of Dcap from initial denitrification rates was only successful for samples from the NO3--bearing zone, whereas a lag-phase of denitrification in samples from deeper zones of NO3- free groundwater caused imprecise predictions. Our results thus show that Dcap of sandy Pleistocene aquifers can be predicted using a combination of short-term incubation and

  7. Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures.

    PubMed

    Wu, Yucheng; Ke, Xiubin; Hernández, Marcela; Wang, Baozhan; Dumont, Marc G; Jia, Zhongjun; Conrad, Ralf

    2013-05-01

    Both bacteria and archaea potentially contribute to ammonia oxidation, but their roles in freshwater sediments are still poorly understood. Seasonal differences in the relative activities of these groups might exist, since cultivated archaeal ammonia oxidizers have higher temperature optima than their bacterial counterparts. In this study, sediment collected from eutrophic freshwater Lake Taihu (China) was incubated at different temperatures (4°C, 15°C, 25°C, and 37°C) for up to 8 weeks. We examined the active bacterial and archaeal ammonia oxidizers in these sediment microcosms by using combined stable isotope probing (SIP) and molecular community analysis. The results showed that accumulation of nitrate in microcosms correlated negatively with temperature, although ammonium depletion was the same, which might have been related to enhanced activity of other nitrogen transformation processes. Incubation at different temperatures significantly changed the microbial community composition, as revealed by 454 pyrosequencing targeting bacterial 16S rRNA genes. After 8 weeks of incubation, [(13)C]bicarbonate labeling of bacterial amoA genes, which encode the ammonia monooxygenase subunit A, and an observed increase in copy numbers indicated the activity of ammonia-oxidizing bacteria in all microcosms. Nitrosomonas sp. strain Is79A3 and Nitrosomonas communis lineages dominated the heavy fraction of CsCl gradients at low and high temperatures, respectively, indicating a niche differentiation of active bacterial ammonia oxidizers along the temperature gradient. The (13)C labeling of ammonia-oxidizing archaea in microcosms incubated at 4 to 25°C was minor. In contrast, significant (13)C labeling of Nitrososphaera-like archaea and changes in the abundance and composition of archaeal amoA genes were observed at 37°C, implicating autotrophic growth of ammonia-oxidizing archaea under warmer conditions.

  8. Autotrophic Growth of Bacterial and Archaeal Ammonia Oxidizers in Freshwater Sediment Microcosms Incubated at Different Temperatures

    PubMed Central

    Wu, Yucheng; Ke, Xiubin; Hernández, Marcela; Wang, Baozhan; Dumont, Marc G.; Jia, Zhongjun

    2013-01-01

    Both bacteria and archaea potentially contribute to ammonia oxidation, but their roles in freshwater sediments are still poorly understood. Seasonal differences in the relative activities of these groups might exist, since cultivated archaeal ammonia oxidizers have higher temperature optima than their bacterial counterparts. In this study, sediment collected from eutrophic freshwater Lake Taihu (China) was incubated at different temperatures (4°C, 15°C, 25°C, and 37°C) for up to 8 weeks. We examined the active bacterial and archaeal ammonia oxidizers in these sediment microcosms by using combined stable isotope probing (SIP) and molecular community analysis. The results showed that accumulation of nitrate in microcosms correlated negatively with temperature, although ammonium depletion was the same, which might have been related to enhanced activity of other nitrogen transformation processes. Incubation at different temperatures significantly changed the microbial community composition, as revealed by 454 pyrosequencing targeting bacterial 16S rRNA genes. After 8 weeks of incubation, [13C]bicarbonate labeling of bacterial amoA genes, which encode the ammonia monooxygenase subunit A, and an observed increase in copy numbers indicated the activity of ammonia-oxidizing bacteria in all microcosms. Nitrosomonas sp. strain Is79A3 and Nitrosomonas communis lineages dominated the heavy fraction of CsCl gradients at low and high temperatures, respectively, indicating a niche differentiation of active bacterial ammonia oxidizers along the temperature gradient. The 13C labeling of ammonia-oxidizing archaea in microcosms incubated at 4 to 25°C was minor. In contrast, significant 13C labeling of Nitrososphaera-like archaea and changes in the abundance and composition of archaeal amoA genes were observed at 37°C, implicating autotrophic growth of ammonia-oxidizing archaea under warmer conditions. PMID:23455342

  9. Thermophilic nitrate-reducing microorganisms prevent sulfate reduction in cold marine sediments incubated at high temperature

    NASA Astrophysics Data System (ADS)

    Nepomnyashchaya, Yana; Rezende, Julia; Hubert, Casey

    2014-05-01

    Hydrogen sulphide produced during metabolism of sulphate-reducing microorganisms (SRM) is toxic, corrosive and causes detrimental oil reservoir souring. During secondary oil recovery, injecting oil reservoirs with seawater that is rich in sulphate and that also cools high temperature formations provides favourable growth conditions for SRM. Nitrate addition can prevent metabolism of SRM by stimulating nitrate-reducing microorganisms (NRM). The investigations of thermophilic NRM are needed to develop mechanisms to control the metabolism of SRM in high temperature oil field ecosystems. We therefore established a model system consisting of enrichment cultures of cold surface marine sediments from the Baltic Sea (Aarhus Bay) that were incubated at 60°C. Enrichments contained 25 mM nitrate and 40 mM sulphate as potential electron acceptors, and a mixture of the organic substrates acetate, lactate, propionate, butyrate (5 mM each) and yeast extract (0.01%) as potential carbon sources and electron donors. Slurries were incubated at 60°C both with and without initial pasteurization at 80°C for 2 hours. In the enrichments containing both nitrate and sulphate, the concentration of nitrate decreased indicating metabolic activity of NRM. After a four-hour lag phase the rate of nitrate reduction increased and the concentration of nitrate dropped to zero after 10 hours of incubation. The concentration of nitrite increased as the reduction of nitrate progressed and reached 16.3 mM after 12 hours, before being consumed and falling to 4.4 mM after 19-day of incubation. No evidence for sulphate reduction was observed in these cultures during the 19-day incubation period. In contrast, the concentration of sulphate decreased up to 50% after one week incubation in controls containing only sulphate but no nitrate. Similar sulfate reduction rates were seen in the pasteurized controls suggesting the presence of heat resistant SRM, whereas nitrate reduction rates were lower in the

  10. Influence of sulfate input on freshwater sediments: Insights from incubation experiments

    USGS Publications Warehouse

    Szynkiewicz, Anna; Jedrysek, Mariusz Orion; Kurasiewicz, M.; Mastalerz, Maria

    2008-01-01

    Incubation experiments were carried out under high and low SO42 - conditions to investigate the buffering capacity of lake sediments. Increased SO42 - content in the water column enhanced microbial SO42 - reduction, causing a continuous decrease of SO42 - content from 1086 to 83 mg/L paralleled by an increase of pH in the water column from 3.76 to 7.20. These changes were accompanied by decreased methanogenesis in the incubated sediments. The results demonstrate that the buffering capacity resulted from a variety of biodegradation pathways controlled to a large extent by SO42 - reduction, rather than by direct anaerobic oxidation of CH4. This is documented by distinctly lower ??13C values (from -73.99 to -65.24???) of the CH4 generated under higher SO42 - conditions compared to higher ??13C values (from -68.98 to -61.37???) of the CH4 generated under lower SO42 - conditions. ?? 2008 Elsevier Ltd. All rights reserved.

  11. Temperature induced decoupling of enzymatic hydrolysis and carbon remineralization in long-term incubations of Arctic and temperate sediments

    NASA Astrophysics Data System (ADS)

    Robador, Alberto; Brüchert, Volker; Steen, Andrew D.; Arnosti, Carol

    2010-04-01

    Extracellular enzymatic hydrolysis of high-molecular weight organic matter is the initial step in sedimentary organic carbon degradation and is often regarded as the rate-limiting step. Temperature effects on enzyme activities may therefore exert an indirect control on carbon mineralization. We explored the temperature sensitivity of enzymatic hydrolysis and its connection to subsequent steps in anoxic organic carbon degradation in long-term incubations of sediments from the Arctic and the North Sea. These sediments were incubated under anaerobic conditions for 24 months at temperatures of 0, 10, and 20 °C. The short-term temperature response of the active microbial community was tested in temperature gradient block incubations. The temperature optimum of extracellular enzymatic hydrolysis, as measured with a polysaccharide (chondroitin sulfate), differed between Arctic and temperate habitats by about 8-13 °C in fresh sediments and in sediments incubated for 24 months. In both Arctic and temperate sediments, the temperature response of chondroitin sulfate hydrolysis was initially similar to that of sulfate reduction. After 24 months, however, hydrolysis outpaced sulfate reduction rates, as demonstrated by increased concentrations of dissolved organic carbon (DOC) and total dissolved carbohydrates. This effect was stronger at higher incubation temperatures, particularly in the Arctic sediments. In all experiments, concentrations of volatile fatty acids (VFA) were low, indicating tight coupling between VFA production and consumption. Together, these data indicate that long-term incubation at elevated temperatures led to increased decoupling of hydrolytic DOC production relative to fermentation. Temperature increases in marine sedimentary environments may thus significantly affect the downstream carbon mineralization and lead to the increased formation of refractory DOC.

  12. Determination of Sediment Oxygen Demand in the Ziya River Watershed, China: Based on Laboratory Core Incubation and Microelectrode Measurements.

    PubMed

    Rong, Nan; Shan, Baoqing; Wang, Chao

    2016-02-19

    A study coupling sedimentcore incubation and microelectrode measurement was performed to explore the sediment oxygen demand (SOD) at 16 stations in the Ziya River Watershed, a severely polluted and anoxic river system in the north of China. Total oxygen flux values in the range 0.19-1.41 g/(m²·d) with an average of 0.62 g/(m²·d) were obtained by core incubations, and diffusive oxygen flux values in the range 0.15-1.38 g/(m²·d) with an average of 0.51 g/(m²·d) were determined by microelectrodes. Total oxygen flux obviously correlated with diffusive oxygen flux (R² = 0.842). The microelectrode method produced smaller results than the incubation method in 15 of 16 sites, and the diffusive oxygen flux was smaller than the total oxygen flux. Although the two sets of SOD values had significant difference accepted by the two methods via the Wilcoxon signed-rank test (p < 0.05), the microelectrode method was shown to produce results that were similar to those from the core incubation method. The microelectrode method, therefore, could be used as an alternative method for traditional core incubation method, or as a method to verify SOD rates measured by other methods. We consider that high potential sediment oxygen demand would occur in the Ziya River Watershed when the dissolved oxygen (DO) recovered in the overlying water.

  13. Determination of Sediment Oxygen Demand in the Ziya River Watershed, China: Based on Laboratory Core Incubation and Microelectrode Measurements

    PubMed Central

    Rong, Nan; Shan, Baoqing; Wang, Chao

    2016-01-01

    A study coupling sedimentcore incubation and microelectrode measurementwas performed to explore the sediment oxygen demand (SOD) at 16 stations in the Ziya River Watershed, a severely polluted and anoxic river system in the north of China. Total oxygen flux values in the range 0.19–1.41 g/(m2·d) with an average of 0.62 g/(m2·d) were obtained by core incubations, and diffusive oxygen flux values in the range 0.15–1.38 g/(m2·d) with an average of 0.51 g/(m2·d) were determined by microelectrodes. Total oxygen flux obviously correlated with diffusive oxygen flux (R2 = 0.842). The microelectrode method produced smaller results than the incubation method in 15 of 16 sites, and the diffusive oxygen flux was smaller than the total oxygen flux. Although the two sets of SOD values had significant difference accepted by the two methods via the Wilcoxon signed-rank test (p < 0.05), the microelectrode method was shown to produce results that were similar to those from the core incubation method. The microelectrode method, therefore, could be used as an alternative method for traditional core incubation method, or as a method to verify SOD rates measured by other methods. We consider that high potential sediment oxygen demand would occur in the Ziya River Watershed when the dissolved oxygen (DO) recovered in the overlying water. PMID:26907307

  14. The influence of six pharmaceuticals on freshwater sediment microbial growth incubated at different temperatures and UV exposures.

    PubMed

    Veach, Allison; Bernot, Melody J; Mitchell, James K

    2012-07-01

    Pharmaceutical compounds have been detected in freshwater for several decades. Once they enter the aquatic ecosystem, they may be transformed abiotically (i.e., photolysis) or biotically (i.e., microbial activity). To assess the influence of pharmaceuticals on microbial growth, basal salt media amended with seven pharmaceutical treatments (acetaminophen, caffeine, carbamazepine, cotinine, ibuprofen, sulfamethoxazole, and a no pharmaceutical control) were inoculated with stream sediment. The seven pharmaceutical treatments were then placed in five different culture environments that included both temperature treatments of 4, 25, 37°C and light treatments of continuous UV-A or UV-B exposure. Microbial growth in the basal salt media was quantified as absorbance (OD(550)) at 7, 14, 21, 31, and 48d following inoculation. Microbial growth was significantly influenced by pharmaceutical treatments (P < 0.01) and incubation treatments (P < 0.01). Colonial morphology of the microbial communities post-incubation identified selection of microbial and fungal species with exposure to caffeine, cotinine, and ibuprofen at 37°C; acetaminophen, caffeine, and cotinine at 25°C; and carbamazepine exposed to continuous UV-A. Bacillus and coccus cellular arrangements (1000X magnification) were consistently observed across incubation treatments for each pharmaceutical treatment although carbamazepine and ibuprofen exposures incubated at 25°C also selected spiral-shaped bacteria. These data indicate stream sediment microbial communities are influenced by pharmaceuticals though physiochemical characteristics of the environment may dictate microbial response.

  15. Measuring hypoxia induced metal release from highly contaminated estuarine sediments during a 40 day laboratory incubation experiment.

    PubMed

    Banks, Joanne L; Ross, D Jeff; Keough, Michael J; Eyre, Bradley D; Macleod, Catriona K

    2012-03-15

    Nutrient inputs to estuarine and coastal waters worldwide are increasing and this in turn is increasing the prevalence of eutrophication and hypoxic and anoxic episodes in these systems. Many urbanised estuaries are also subject to high levels of anthropogenic metal contamination. Environmental O(2) levels may influence whether sediments act as sinks or sources of metals. In this study we investigated the effect of an extended O(2) depletion event (40 days) on fluxes of trace metals (and the metalloid As) across the sediment-water interface in sediments from a highly metal contaminated estuary in S.E. Tasmania, Australia. We collected sediments from three sites that spanned a range of contamination and measured total metal concentration in the overlying water using sealed core incubations. Manganese and iron, which are known to regulate the release of other divalent cations from sub-oxic sediments, were released from sediments at all sites as hypoxia developed. In contrast, the release of arsenic, cadmium, copper and zinc was comparatively low, most likely due to inherent stability of these elements within the sediments, perhaps as a result of their refractory origin, their association with fine-grained sediments or their being bound in stable sulphide complexes. Metal release was not sustained due to the powerful effect of metal-sulphide precipitation of dissolved metals back into sediments. The limited mobilisation of sediment bound metals during hypoxia is encouraging, nevertheless the results highlight particular problems for management in areas where hypoxia might occur, such as the release of metals exacerbating already high loads or resulting in localised toxicity. Copyright © 2012 Elsevier B.V. All rights reserved.

  16. Effects of increasing temperatures on methane concentrations and methanogenesis during experimental incubation of sediments from oligotrophic and mesotrophic lakes

    NASA Astrophysics Data System (ADS)

    Fuchs, Andrea; Lyautey, Emilie; Montuelle, Bernard; Casper, Peter

    2016-05-01

    Global warming is expected to raise temperatures in freshwater lakes, which have been acknowledged to contribute up to 10% of the atmospheric methane concentrations. Increasing temperature enhances methane production and oxidation rates, but few studies have considered the balance between both processes at experimentally higher temperatures within lake sediments. The temperature dependence of methane concentrations, methane production rates, and methanogenic (mcrA) and methanotrophic (pmoA) community size was investigated in intact sediment cores incubated with aerobic hypolimnion water at 4, 8, and 12°C over 3 weeks. Sediment cores of 25 cm length were collected at two temperate lakes—Lake Stechlin (Germany; mesotrophic-oligotrophic, maximum depth 69.5 m) and Lake Geneva (France/Switzerland; mesotrophic, maximum depth 310 m). While methane production rates in Lake Stechlin sediments did not change with increasing temperatures, methane concentrations decreased significantly. In contrast, methane production rates increased in 20-25 cm in Lake Geneva sediments with increasing temperatures, but methane concentrations did not differ. Real-time PCR demonstrated the methanogenic and methanotrophic community size remained stable independently of the incubation temperature. Methane concentrations as well as community sizes were 1-2 orders of magnitude higher in Lake Stechlin than in Lake Geneva, while potential methane production rates after 24 h were similar in both lakes, with on average 2.5 and 1.9 nmol g-1 DW h-1, respectively. Our results suggest that at higher temperatures methane oxidation could balance, and even exceed, methane production. This suggests that anaerobic methane oxidation could be involved in the methane balance at a more important rate than previously anticipated.

  17. Microbially-mediated Destabilization Of Sedimentary Organic Carbon: Isotopic Tracking of Carbon Movement in Laboratory Incubations of Glucose-amended Aquifer Sediment to Determine Priming Effects

    NASA Astrophysics Data System (ADS)

    Pracht, L. E.; Polizzotto, M.; Neumann, R. B.

    2016-12-01

    Arsenic-contaminated groundwater is a worldwide concern; the result of both geogenic and anthropogenic sources. In naturally-contaminated systems, organic carbon fueling reductive dissolution is considered to be the primary mechanism of mobilization of arsenic off sediment into groundwater. Previous laboratory incubations of aquifer sediment and groundwater collected from a contaminated subsurface system in Bangladesh revealed a pool of biologically available organic carbon mobilized from the sandy sediment. Results indicated that sediments can contain chemically labile organic carbon that is physically protected or otherwise inaccessible to microbial communities. Disturbance of the aquifer matrix could destabilize this pool of sedimentary organic carbon and fuel microbial reactions that mobilize contaminants such as arsenic. Here we present results from laboratory incubations conducted to test the "priming" hypothesis, that an influx of bioavailable surface-derived organic carbon can fuel microbial reactions that target the solid phase and destabilize sedimentary organic carbon, fueling further reactions. Waters containing a range of glucose concentrations were mixed with sediment collected from a Cambodian aquifer, and concentrations and isotopic signatures of carbon were tracked over time in each material phase. The aquifer sediment contained arsenic-bearing oxide minerals, and thus, dissolved concentrations of arsenic, iron, and manganese concentrations were also measured. Results conceptually demonstrate how both surface and sedimentary derived organic carbon can interact to fuel microbial reactions that mobilize arsenic and impact groundwater quality.

  18. A laboratory-incubated redox oscillation experiment to investigate Hg fluxes from highly contaminated coastal marine sediments (Gulf of Trieste, Northern Adriatic Sea).

    PubMed

    Emili, A; Carrasco, L; Acquavita, A; Covelli, S

    2014-03-01

    Mercury (Hg) mobility at the sediment-water interface was investigated during a laboratory incubation experiment conducted with highly contaminated sediments (13 μg g(-1)) of the Gulf of Trieste. Undisturbed sediment was collected in front of the Isonzo River mouth, which inflows Hg-rich suspended material originating from the Idrija (NW Slovenia) mining district. Since hypoxic and anoxic conditions at the bottom are frequently observed and can influence the Hg biogeochemical behavior, a redox oscillation was simulated in the laboratory, at in situ temperature, using a dark flux chamber. Temporal variations of several parameters were monitored simultaneously: dissolved Hg (DHg) and methylmercury (MeHg), O2, NH4 (+), NO3 (-) + NO2 (-), PO4 (3-), H2S, dissolved Mn(2+), dissolved inorganic and organic carbon (DIC and DOC). Under anoxic conditions, both Hg (665 ng m(2) day(-1)) and MeHg (550 ng m(2) day(-1)) fluxed from sediments into the water column, whereas re-oxygenation caused concentrations of MeHg and Hg to rapidly drop, probably due to re-adsorption onto Fe/Mn-oxyhydroxides and enhanced demethylation processes. Hence, during anoxic events, sediments of the Gulf of Trieste may be considered as an important source of DHg species for the water column. On the contrary, re-oxygenation of the bottom compartment mitigates Hg and MeHg release from the sediment, thus acting as a natural "defence" from possible interaction between the metal and the aquatic organisms.

  19. Hexadecane and pristane degradation potential at the level of the aquifer--evidence from sediment incubations compared to in situ microcosms.

    PubMed

    Schurig, Christian; Miltner, Anja; Kaestner, Matthias

    2014-01-01

    Monitored natural attenuation is widely accepted as a sustainable remediation method. However, methods providing proof of proceeding natural attenuation within the water-unsaturated (vadose) zone are still relying on proxies such as measurements of reactive and non-reactive gases, or sediment sampling and subsequent mineralisation assays, under artificial conditions in the laboratory. In particular, at field sites contaminated with hydrophobic compounds, e.g. crude oil spills, an in situ evaluation of natural attenuation is needed, because in situ methods are assumed to provide less bias than investigations applying either proxies for biodegradation or off-site microcosm experiments. In order to compare the current toolbox of methods with the recently developed in situ microcosms, incubations with direct push-sampled sediments from the vadose and the aquifer zones of a site contaminated with crude oil were carried out in conventional microcosms and in situ microcosms. The results demonstrate the applicability of the in situ microcosm approach also outside water-saturated aquifer conditions in the vadose zone. The sediment incubation experiments demonstrated turnover rates in a similar range (vadose, 4.7 mg/kg*day; aquifer, 6.4 mghexadecane/kgsoil/day) of hexadecane degradation in the vadose zone and the aquifer, although mediated by slightly different microbial communities according to the analysis of fatty acid patterns and amounts. Additional experiments had the task of evaluating the degradation potential for the branched-chain alkane pristane (2,6,10,14-tetramethylpentadecane). Although this compound is regarded to be hardly degradable in comparison to n-alkanes and is thus frequently used as a reference parameter for indexing the extent of biodegradation of crude oils, it could be shown to be degraded by means of the incubation experiments. Thus, the site had a high inherent potential for natural attenuation of crude oils both in the vadose zone and the

  20. Denitrification activity of aquifer material from two different sandy aquifers in northern Germany measured by laboratory incubation experiments in relation to influencing sediment parameters

    NASA Astrophysics Data System (ADS)

    Eschenbach, Wolfram; Well, Reinhard; Flessa, Heiner; Duijnisveld, Wilhelmus H. M.; Walther, Wolfgang

    2010-05-01

    In NO3¯ contaminated aquifers containing reduced compounds like organic carbon or sulfides, denitrification is an intense process. Its characterization is of interest because NO3¯ consumption improves water quality and N2O production can cause emission of this greenhouse gas to the atmosphere. Spatial distribution of NO3¯ and N2 produced by denitrification in groundwater (excess N2) reflects the NO3¯ input as well as cumulative denitrification during aquifer passage. The amount and spatial distribution of reduced compounds within denitrifying aquifers is not well known. Recent findings from parallel investigations on in situ denitrification and reactive compounds suggests that single-well 15N tracer tests might be suitable to characterize the stock of reduced compounds in aquifers (Konrad 2008), but an evaluation of this approach has not been realized until now. The overall objective of our studies is to measure the spatial and long-term dynamics of denitrification within two sandy aquifers in northern Germany. This includes measurement of the actually occurring denitrification process in the field by 15N-tracer experiments and incubation experiments with corresponding aquifer material. Beside the comparison of field and laboratory data concerning the denitrification activity, we also want to determine the long-term denitrification potential which is governed by the stock of reactive material within these sediments. Here we present the first results of these long-term incubation experiments to investigate the stock of reactive material present in these sediments and its denitrification activity. In these batch experiments we filled the aquifer material from different depths between two and 68 m below ground in glass bottles, supplemented it with K15NO3 solution, sealed the bottles airtight with rubber septa and flushed the headspace with pure N2. Afterward the bottles where stored in the dark by 10° C to obtain aquifer like conditions. The labeled

  1. Sensor Measurements and Sediment Incubations Indicate Diurnal Redox Cycling Associate With Arsenic Mobilization at a Bangladeshi Rice Paddy

    NASA Astrophysics Data System (ADS)

    Lin, T.; Lin, C.; Ramanathan, N.; Neumann, R.; Harvey, C.; Jay, J.

    2007-12-01

    The presence of arsenic in the groundwater has led to the largest environmental poisoning in history; tens of millions of people in the Ganges Delta continue to drink groundwater that is dangerously contaminated with arsenic (As). Rice fields receive large loads of arsenic with irrigation water and provide recharge to the underlying aquifer. It is currently not known whether rice fields are a sink or source of arsenic in the hydrologic system. In the dry season, as As(III)-containing minerals are oxidized, As(V) is released and will adhere to Fe hydr(oxide) minerals. When sediments are inundated with water, reducing conditions will then drive reduction of Fe hydr(oxides) and release of As. We have been intensively studying a field site in Munshiganj, Bangladesh with extremely high levels of arsenic in groundwater (up to 1.2 mg/L). To better understand geochemical and microbial processes leading to As mobilization in surface sediment, we deployed sensors to take temporally dense measurements across our experimental rice paddy. Data collected in both 2006 and 2007 showed trends in geochemical parameters indicating that diurnal, possibly plant-induced, processes may be important. Over a two month period, nitrate concentrations decrease consistently each day as ammonium levels increase, presumably through temperature driven reductive processes. Nitrate concentrations in the subsurface then increase while ammonium levels decrease, possibly due to root oxygen leakage or rapid infiltration of oxygen rich surface water. Using sediment from the rice paddy and artificial irrigation water, laboratory microcosms were constructed to simulate the diurnal cycles observed at the field site. In carbon-ammended treatments, Fe and As cycling can occur on the order of days. Oscillations in redox conditions on diurnal as well as seasonal time scales may be important in the mobilization of arsenic into aquifers. By elucidating As mobilization mechanisms at an experimental rice paddy

  2. Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation

    NASA Astrophysics Data System (ADS)

    Bowles, Marshall W.; Samarkin, Vladimir A.; Bowles, Kathy M.; Joye, Samantha B.

    2011-01-01

    We investigated coupling between sulfate reduction (SR) and anaerobic oxidation of methane (AOM) by quantifying pore water geochemical profiles, determining rates of microbial processes, and examining microbial community structure at two sites within Mississippi Canyon lease block 118 (MC118) in the Northern Gulf of Mexico. Sediments from the northwest seep contained high concentrations of methane while sediments from the southwest seep contained methane, gaseous n-alkanes and liquid hydrocarbons and had abundant surficial accumulations of gas hydrate. Volumetric (21.5 μmol cm -3 day -1) and integrated (1429 mmol m -2 day -1) rates of SR at MC118 in ex situ incubations are the highest reported thus far for seafloor environments. AOM rates were small in comparison, with volumetric rates ranging from 0.1 to 12.6 nmol cm -3 day -1. Diffusion cannot adequately supply the sulfate required to support these high SR rates so additional mechanisms, possibly biological sulfide oxidation and/or downward advection, play important roles in supplying sulfate at these sites. The microbial communities at MC118 included sulfate-reducing bacteria phylogenetically associated with Desulfobacterium anilini, which is capable of complex hydrocarbon degradation. Despite low AOM rates, the majority of archaea identified were phylogenetically related to previously described methane oxidizing archaea. To evaluate whether weak coupling between SR and AOM occurs in habitats lacking the complex hydrocarbon milieu present at MC118, we compiled available SR and AOM rates and found that the global median ratio of SR to AOM was 10.7:1 rather than the expected 1:1. The global median integrated AOM rate was used to refine global estimates for AOM rates at cold seeps; these new estimates are only 5% of the previous estimate.

  3. Effects of allylthiourea, salinity, and pH on ammonia/ammonium-oxidizing prokaryotes in mangrove sediment incubated in laboratory microcosms.

    PubMed

    Wang, Yong-Feng; Gu, Ji-Dong

    2014-04-01

    Anaerobic ammonium-oxidizing (anammox) bacteria, aerobic ammonia-oxidizing archaea (AOA) and bacteria (AOB) are three groups of ammonia/ammonium-oxidizing prokaryotes (AOPs) involved in the biochemical nitrogen cycling. In this study, the effects of allylthiourea (ATU), pH, and salinity on these three groups from mangrove sediment were investigated through microcosm incubation in laboratory. ATU treatments (50, 100, and 500 mg L(-1)) obviously affected the community structure of anammox bacteria and AOB, but only slightly for AOA. ATU began to inhibit anammox bacteria growth slightly from day 10, but had an obvious inhibition on AOA growth from the starting of the study. At 100 mg L(-1) of ATU or higher, AOB growth was inhibited, but only lasted for 5 days. The pH treatments showed that acidic condition (pH 5) had a slight effect on the community structure of anammox bacteria and AOA, but an obvious effect on AOB. Acidic condition promoted the growth of all groups of AOPs in different extent, but alkaline condition (pH 9) had a weak effect on AOB community structure and a strong effect on both anammox bacteria and AOA. Alkaline condition obviously inhibited anammox bacteria growth, slightly promoted AOA, and slightly promoted AOB in the first 20 days, but inhibited afterward. Salinity treatment showed that higher salinity (20 and 40 ‰) resulted in higher anammox bacteria diversity, and both AOA and AOB might have species specificity to salinity. High salinity promoted the growth of both anammox bacteria and AOB, inhibited AOA between 5 and 10 days, but promoted afterward. The results help to understand the role of these microbial groups in biogeochemical nitrogen cycling and their responses to the changing environments.

  4. Developing Rural Business Incubators.

    ERIC Educational Resources Information Center

    Weinberg, Mark L.; Burnier, DeLysa

    1991-01-01

    Offers background on rural entrepreneurship and incubation in the United States, with particular focus on rural incubators at community colleges and regional incubation systems. Explains how incubators, which provide shared services and business/management assistance for tenant companies, differ from other entrepreneurial development strategies.…

  5. Developing Rural Business Incubators.

    ERIC Educational Resources Information Center

    Weinberg, Mark L.; Burnier, DeLysa

    1991-01-01

    Offers background on rural entrepreneurship and incubation in the United States, with particular focus on rural incubators at community colleges and regional incubation systems. Explains how incubators, which provide shared services and business/management assistance for tenant companies, differ from other entrepreneurial development strategies.…

  6. Cyst-Theca Relationship and Phylogenetic Position of Impagidinium caspienense Incubated from Caspian Sea Surface Sediments: Relation to Gonyaulax baltica and Evidence for Heterospory within Gonyaulacoid Dinoflagellates.

    PubMed

    Mertens, Kenneth N; Takano, Yoshihito; Gu, Haifeng; Bagheri, Siamak; Pospelova, Vera; Pieńkowski, Anna J; Leroy, Suzanne; Matsuoka, Kazumi

    2017-04-11

    We investigate the cyst-theca relationship of Impagidinium caspienense. Through an incubation experiment, we succeeded in examining the motile stage. Additional molecular analysis of single-cyst PCR (LSU and SSU rDNA) reveal that the cyst is related to the species Gonyaulax baltica Ellegaard et al. (2002). The ability of this species to belong to two types of cyst-based genera (spiniferate and impagidinioid) suggests that environmental (particularly salinity) and not genetic factors explain the formation of both morphotypes by Gonyaulax baltica, which provides evidence for heterospory in this species. The affiliation to Gonyaulax baltica demonstrates that Impagidinium caspienense is not endemic to the Caspian Sea. The phylogenetic position of several other gonyaulacoid species is also documented: Impagidinium pallidum, Ataxiodinium choane, Pyxidinopsis psilata, Spiniferites belerius, and Spiniferites ramosus. The LSU and SSU rDNA based phylogenies suggest that the genera Impagidinium and Spiniferites are not monophyletic, and that Pyxidinopsis psilata and Ataxiodinium choane are close to Gonyaulax verior and Gonyaulax polygramma, respectively. In addition, this study accentuates the importance of cyst morphology in the classification of the Gonyaulacales. This article is protected by copyright. All rights reserved.

  7. Sedimentation

    Treesearch

    Cliff R. Hupp; Michael R. Schening

    2000-01-01

    Sedimentation is arguably the most important water-quality concern in the United States. Sediment trapping is cited frequently as a major function of riverine-forested wetlands, yet little is known about sedimcntation rates at the landscape scale in relation to site parameters, including woody vegetation type, elevation, velocity, and hydraulic connection to the river...

  8. Rural Incubator Profile.

    ERIC Educational Resources Information Center

    Weinberg, Mark L.

    This profile summarizes the responses of 20 managers of rural business incubators, reporting on their operations, entry and exit policies, facility promotion, service arrangements and economic development outcomes. Incubators assist small businesses in the early stages of growth by providing them with rental space, shared services, management and…

  9. Evolution of Incubation Models: Evidence from the Italian Incubation Industry

    ERIC Educational Resources Information Center

    Grandi, Alessandro; Grimaldi, Rosa

    2004-01-01

    This paper addresses the role of incubators in supporting new venture creation. A mapping of four different types of incubator is proposed: corporate private incubators (CPIs), independent private incubators (IPIs), business innovation centres (BICs) and university business incubators (UBIs). This mapping is exemplified through case studies of one…

  10. Evolution of Incubation Models: Evidence from the Italian Incubation Industry

    ERIC Educational Resources Information Center

    Grandi, Alessandro; Grimaldi, Rosa

    2004-01-01

    This paper addresses the role of incubators in supporting new venture creation. A mapping of four different types of incubator is proposed: corporate private incubators (CPIs), independent private incubators (IPIs), business innovation centres (BICs) and university business incubators (UBIs). This mapping is exemplified through case studies of one…

  11. Incubation of NASA technology

    NASA Astrophysics Data System (ADS)

    Olson, Richard

    1996-03-01

    Traditionally, government agencies have sought to transfer technology by licensing to large corporations. An alternative route to commercialization is through the entrepreneurial process: using government technology to assist new businesses in the environment of a business incubator. The NASA Ames Technology Commercialization Center, in Sunnyvale, California, is a business incubator used to commercialize NASA technology. In operation almost two years, it has helped twenty new, high technology ventures. Ice Management Systems is one of these. The Center is funded by NASA and operated by IC2, a think-tank associated with the University of Texas at Austin.

  12. Nanoporous microscale microbial incubators.

    PubMed

    Ge, Zhifei; Girguis, Peter R; Buie, Cullen R

    2016-02-07

    Reconstruction of phylogenetic trees based on 16S rRNA gene sequencing reveals abundant microbial diversity that has not been cultured in the laboratory. Many attribute this so-called 'great plate count anomaly' to traditional microbial cultivation techniques, which largely facilitate the growth of a single species. Yet, it is widely recognized that bacteria in nature exist in complex communities. One technique to increase the pool of cultivated bacterial species is to co-culture multiple species in a simulated natural environment. Here, we present nanoporous microscale microbial incubators (NMMI) that enable high-throughput screening and real-time observation of multi-species co-culture. The key innovation in NMMI is that they facilitate inter-species communication while maintaining physical isolation between species, which is ideal for genomic analysis. Co-culture of a quorum sensing pair demonstrates that the NMMI can be used to culture multiple species in chemical communication while monitoring the growth dynamics of individual species.

  13. Incubation length of dabbling ducks

    USGS Publications Warehouse

    Wells-Berlin, A. M.; Prince, H.H.; Arnold, T.W.

    2005-01-01

    We collected unincubated eggs from wild Mallard (Anas platyrhynchos), Gadwall (A. strepera), Blue-winged Teal (A. discors), and Northern Shoveler (A. clypeata) nests and artificially incubated them at 37.5??C. Average incubation lengths of Mallard, Gadwall, and Northern Shoveler eggs did not differ from their wild-nesting counterparts, but artificially incubated Blue-winged Teal eggs required an additional 1.7 days to hatch, suggesting that wild-nesting teal incubated more effectively. A small sample of Mallard, Gadwall, and Northern Shoveler eggs artificially incubated at 38.3??C hatched 1 day sooner, indicating that incubation temperature affected incubation length. Mean incubation length of Blue-winged Teal declined by 1 day for each 11-day delay in nesting, but we found no such seasonal decline among Mallards, Gadwalls, or Northern Shovelers. There is no obvious explanation for the seasonal reduction in incubation length for Blue-winged Teal eggs incubated in a constant environment, and the phenomenon deserves further study. ?? The Cooper Ornithological Society 2005.

  14. Small Business Incubator Resource Kit.

    ERIC Educational Resources Information Center

    Small Business Administration, Washington, DC.

    This kit consists of a set of resources to assist those interested in the start-up and management (incubation) of a new business. A guide to starting and managing a small business incubator (SBI) is provided. Included in the guide are the following: a discussion of the role and characteristics of the SBI concept; guidelines for carrying out the…

  15. Incubating Next -Gen.Edu

    ERIC Educational Resources Information Center

    Schaffhauser, Dian

    2008-01-01

    Given a blank slate, what should the 21st century college classroom look like, and how should it be operated? Answering those questions is the idea behind setting up "incubator classrooms," spaces dedicated to trying out new technologies and new ways of teaching and learning. By incubating new ideas, faculty members and IT staff discover which…

  16. Lewis Incubator for Technology (LIFT)

    NASA Technical Reports Server (NTRS)

    Zeman, Wayne P.; King, Joseph B.; Jankura, Richard E., Jr.

    2004-01-01

    This report summarizes the work done to operate the Lewis Incubator for Technology for the period October 2000 through September 2004. The Lewis Incubator helped the startup and growth of technology based businesses with the potential to incorporate technology from the NASA Glenn Research Center.

  17. Electromagnetic fields and infant incubators.

    PubMed

    Bearer, C F

    1994-01-01

    Two models of infant incubators were studied to determine the strength of the magnetic field generated by the heater and fan motors. Measurements were taken at intervals along the center line of the incubator. The results show that fields greater than 100 milligauss and 25 milligauss were measured in the C-86 and C-100 model Isolettes, respectively.

  18. Incubating Next -Gen.Edu

    ERIC Educational Resources Information Center

    Schaffhauser, Dian

    2008-01-01

    Given a blank slate, what should the 21st century college classroom look like, and how should it be operated? Answering those questions is the idea behind setting up "incubator classrooms," spaces dedicated to trying out new technologies and new ways of teaching and learning. By incubating new ideas, faculty members and IT staff discover which…

  19. Evaluating the accuracy of core incubations to determine benthic fluxes of 222Rn, 228Ra, and 224Ra, measured in core incubations

    NASA Astrophysics Data System (ADS)

    Wolfe, C. I.; Hammond, D. E.; Schwartz, R. J.

    2009-12-01

    Profiles of radioisotopes in bottom waters are often used to estimate vertical transport. However, horizontal transport often plays a role and may be difficult to evaluate. A boundary condition useful for constraining transport rates is to establish the isotope flux from benthic sediments. We tested a new method to estimate benthic fluxes of isotopes by incubating sediment cores from San Pedro Basin and measuring the changes in concentrations of 222Rn, 228Ra and 224Ra in the overlying water, over a six to seven day incubation period. These results have been compared to fluxes established by applying diffusion-reaction models to the sediment column, based on measuring isotope emanation from sediments, adsorption coefficients, and profiles of the parent isotopes in sediments. There was internal consistency (± 30%) between the core incubation measurement and the radon emanation flux calculated from diffusion-reaction models. The 224Ra flux measurements have been complicated by minor disturbances of cores during collection and the removal of its 228Th parent from core top water during incubation. The 228Ra measurements from San Pedro cores are still in progress, as they require a six month ingrowth period. Cores obtained from Cascadia Basin have also been incubated for two to four days. Incubation fluxes of 222Rn are consistent with the standing crop observed in bottom waters. Incubation fluxes of 228Ra are consistent with predictions from modeling solid phase profiles of radioisotopes in sediments.

  20. The incubation period of kuru.

    PubMed

    Huillard d'Aignaux, Jérôme N; Cousens, Simon N; Maccario, Jean; Costagliola, Dominique; Alpers, Michael P; Smith, Peter G; Alpérovitch, Annick

    2002-07-01

    Kuru is a transmissible spongiform encephalopathy that was identified in Papua New Guinea in the late 1950s. Several thousand cases of the disease occurred during a period of several decades. Epidemiologic investigations implicated ritual endocannibalistic funeral feasts as the likely route through which the infectious agent was spread. We estimated the incubation period distribution of kuru using a back-calculation model and explored the relation among sex, age at infection, and incubation period. Key assumptions in the model were that the number of new kuru infections in a year was proportional to the number of kuru cases dying that year, and that the epidemic arose from a single case of sporadic Creutzfeldt-Jakob Disease occurring around 1900. The mean incubation period of kuru was estimated at between 10.3 and 13.2 years. Point estimates of the 90th percentile ranged from 21.1 to 27.0 years. The incubation period in females was estimated to be shorter than that in males. The shortest incubation periods were estimated in adult women, who may have been exposed to the largest doses of infectious material. Our findings suggest that the relatively young age of cases of variant Creutzfeldt-Jakob disease probably reflects increased levels of exposure in young people, rather than age-dependency in the incubation period.

  1. Infant incubators and radiant warmers.

    PubMed

    Bell, E F

    1983-10-01

    Incubators and radiant warmers are used to maintain the body temperature of newborn infants. This is best done so that the energy expended for metabolic heat production is minimized. The heat output of these devices is usually regulated by servocontrol to keep the skin temperature constant at a site on the abdomen where a thermistor probe is attached. In incubators, air temperature can also be controlled as an alternative to skin temperature servocontrol. Increased ambient humidity, heat shields and clothing have been used to decrease the evaporative or nonevaporative heat loss of infants in incubators under certain conditions. Double-walled incubators, by adding a second inner layer of Plexiglas, reduce radiant heat loss. They may also reduce total heat loss, but only if air temperature is controlled rather than skin temperature. The minimal oxygen consumption under a radiant warmer is the same or perhaps slightly higher than it is for the same infant in an incubator. Compared with incubators, the partition of body heat loss is quite different under radiant warmers. Radiant warmers increase convective and evaporative heat loss and insensible water loss but eliminate radiant heat loss or change it to net gain. A heat shield of thin polyethylene film can be used with a radiant warmer to reduce heat loss by convection and evaporation. The major advantage of the radiant warmer is the easy access it provides to critically-ill infants without disturbing the thermal environment. Its major disadvantage is the increase in insensible water loss produced by the radiant warmer. Most infants can be safely and adequately cared for in either incubator or radiant warmer bed.

  2. Small Technology Business Incubation Needs

    SciTech Connect

    None, None

    2007-12-31

    This report contains a summary of typical business incubation needs of small technology companies. This document will serve as a guide in the design and implementation of services offered by the National Security Technology Incubator (NSTI), an incubator program being designed and developed as part of the National Security Preparedness Project (NSPP), performed under a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes a brief description of the methodology used to perform the needs assessment and services proposed to meet the needs of client companies. The purpose of the NSPP is to promote national security technologies through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with national security technology applications by nurturing them through critical stages of early development. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety, security, and protection of the homeland.

  3. RT 128: New Project Incubator

    DTIC Science & Technology

    2015-09-04

    trustworthy, and persuasive technology principles applied to cybersociophysical systems. Her work in computer science includes a new project on...Doctor’s Checklist Can Help Us Change Health Care from the Inside Out. New York , NY: Plume. Rasmussen, J. (1983). “Skills, Rules, and Knowledge...RT 128: New Project Incubator Technical Report

  4. Sediment transport and resulting deposition in spawning gravels, north coastal California

    Treesearch

    Thomas E. Lisle

    1989-01-01

    Incubating salmonid eggs in streambeds are often threatened by deposition of fine sediment within the gravel. To relate sedimentation of spawning gravel beds to sediment transport, infiltration of fine sediment (

  5. Increased accumulation of sulfur in lake sediments of the high arctic.

    PubMed

    Drevnick, Paul E; Muir, Derek C G; Lamborg, Carl H; Horgan, Martin J; Canfield, Donald E; Boyle, John F; Rose, Neil L

    2010-11-15

    We report a synchronous increase in accumulation of reduced inorganic sulfur since c. 1980 in sediment cores from eight of nine lakes studied in the Canadian Arctic and Svalbard (Norway). Sediment incubations and detailed analyses of sediment profiles from two of the lakes indicate that increases in sulfur accumulation may be due ultimately to a changing climate. Warming-induced lengthening of the ice-free season is resulting in well-documented increases in algal production and sedimentation of the resulting detrital matter. Algal detritus is a rich source of labile carbon, which in these sediments stimulates dissimilatory sulfate reduction. The sulfide produced is stored in sediment (as acid volatile sulfide), converted to other forms of sulfur, or reoxidized to sulfate and lost to the water column. An acceleration of the sulfur cycle in Arctic lakes could have profound effects on important biogeochemical processes, such as carbon burial and mercury methylation.

  6. 21 CFR 866.2540 - Microbiological incubator.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Microbiological incubator. 866.2540 Section 866.2540 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED... incubator. (a) Identification. A microbiological incubator is a device with various chambers or water-filled...

  7. Incubation and Intuition in Creative Problem Solving

    PubMed Central

    Gilhooly, Kenneth J.

    2016-01-01

    Creative problem solving, in which novel solutions are required, has often been seen as involving a special role for unconscious processes (Unconscious Work) which can lead to sudden intuitive solutions (insights) when a problem is set aside during incubation periods. This notion of Unconscious Work during incubation periods is supported by a review of experimental studies and particularly by studies using the Immediate Incubation paradigm. Other explanations for incubation effects, in terms of Intermittent Work or Beneficial Forgetting are considered. Some recent studies of divergent thinking, using the Alternative Uses task, carried out in my laboratory regarding Immediate vs. Delayed Incubation and the effects of resource competition from interpolated activities are discussed. These studies supported a role for Unconscious Work as against Intermittent Conscious work or Beneficial Forgetting in incubation. PMID:27499745

  8. National Security Technology Incubator Evaluation Process

    SciTech Connect

    None, None

    2007-12-31

    This report describes the process by which the National Security Technology Incubator (NSTI) will be evaluated. The technology incubator is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes a brief description of the components, steps, and measures of the proposed evaluation process. The purpose of the NSPP is to promote national security technologies through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with national security technology applications by nurturing them through critical stages of early development. An effective evaluation process of the NSTI is an important step as it can provide qualitative and quantitative information on incubator performance over a given period. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety and security. The mission of the NSTI is to identify, incubate, and accelerate technologies with national security applications at various stages of development by providing hands-on mentoring and business assistance to small businesses and emerging or growing companies. To achieve success for both incubator businesses and the NSTI program, an evaluation process is essential to effectively measure results and implement corrective processes in the incubation design if needed. The evaluation process design will collect and analyze qualitative and quantitative data through performance evaluation system.

  9. An Inexpensive Incubator for the Biology Laboratory.

    ERIC Educational Resources Information Center

    Schofield, Peter

    1996-01-01

    Describes the construction of an insulated wooden wall incubator that combines excellent temperature control over the usual operating range with easy electrical access, low cost, and a wide potential size range. Presents a temperature- monitoring circuit, designed to measure the small temperature variations within the incubator, which could…

  10. Micro-incubator for bacterial biosensing applications

    NASA Astrophysics Data System (ADS)

    Clasen, Estine; Land, Kevin; Joubert, Trudi-Heleen

    2016-02-01

    The presence of Escherichia coli (E. coli ) is a commonly used indicator micro-organism to determine whether water is safe for human consumption.1 This paper discusses the design of a micro-incubator that can be applied to concentrate bacteria prior to environmental water quality screening tests. High sensitivity and rapid test time is essential and there is a great need for these tests to be implemented on-site without the use of a laboratory infrastructure. In the light of these requirements, a mobile micro-incubator was designed, manufactured and characterised. A polydimethylsiloxane (PDMS) receptacle has been designed to house the 1-5 ml cell culture sample.2 A nano-silver printed electronics micro-heater has been designed to incubate the bacterial sample, with an array of temperature sensors implemented to accurately measure the sample temperature at various locations in the cell culture well. The micro-incubator limits the incubation temperature range to 37+/-3 °C in order to ensure near optimal growth of the bacteria at all times.3 The incubation time is adjustable between 30 minutes and 9 hours with a maximum rise time of 15 minutes to reach the set-point temperature. The surface area of the printed nano silver heating element is 500 mm2. Electrical and COMSOL Multiphysics simulations are included in order to give insight on micro-incubator temperature control. The design and characterization of this micro-incubator allows for further research in biosensing applications.

  11. Business Incubator Development in Rural Areas.

    ERIC Educational Resources Information Center

    Weinberg, Mark

    One viable economic development option for rural areas is the creation of business incubators--facilities that aid in the early stages of growth of an enterprise by providing rental space, services, and business assistance. Business incubators promote community development by diversifying the economic base, enhancing the community's image as a…

  12. Incubation energetics of the Laysan Albatross.

    PubMed

    Pettit, T N; Nagy, K A; Ellis, H I; Whittow, G C

    1988-01-01

    The energy expenditure of incubating and foraging Laysan Albatross (Diomedea immutabilis, mean body weight 3.07 kg) was estimated by means of the doubly-labelled water technique. During incubation, the energy expenditure was similar to that of resting birds that were not incubating an egg. The energy expenditure of foraging albatross (2072 kJ/day) was 2.6 times that of resting birds. It was concluded that the energy expenditure of the tropical Laysan Albatross was not less than that of species foraging over cold, high-latitude oceans. An energy budget compiled for an incubating pair of albatross revealed that the energy expenditure of the female was greater than that of the male bird, during the incubation period.

  13. Modeling incubation temperature: the effects of incubator design, embryonic development, and egg size.

    PubMed

    French, N A

    1997-01-01

    A simple model to describe the relationship between the temperature of the developing embryo, incubator temperature, embryo heat production, and thermal conductivity of the egg and surrounding air is presented. During early incubation, embryo temperature is slightly lower than incubator temperature because of evaporative cooling. However, from midincubation onwards, metabolic heat production from the embryo raises embryo temperature above incubator temperature. The extent of the rise in embryo temperature depends on thermal conductivity, which, in turn, is mainly influenced by the air speed over the egg. The importance of air speed and restrictions to air flow within artificial incubators is discussed. Exact determinations of optimum incubation temperatures from studies reported in the literature are difficult because only incubator temperatures are reported. Embryo temperatures can differ from incubator temperature because of differences in thermal conductivity between different incubation systems and differences between incubators in their ability to control temperatures uniformly. It is suggested that shell surface temperatures are monitored in experiments to investigate temperature effects to allow consistent comparisons between trials. Monitoring shell temperatures would also make it easier to translate optimum temperatures derived in small experimental incubators to the large commercial incubators used by the poultry industry. The relationship between egg temperature, the metabolism of the developing embryo and egg size is discussed.

  14. Networked incubators. Hothouses of the new economy.

    PubMed

    Hansen, M T; Chesbrough, H W; Nohria, N; Sull, D N

    2000-01-01

    Business incubators such as Hotbank, CMGI, and Idealab! are a booming industry. Offering office space, funding, and basic services to start-ups, these organizations have become the hottest way to nurture and grow fledgling businesses. But are incubators a fleeting phenomenon born of an overheated stock market, or are they an important and lasting way of creating value and wealth in the new economy? The authors argue that one type of incubator, called a networked incubator, represents a fundamentally new and enduring organizational model uniquely suited to growing businesses in the Internet economy. It shares certain features with other incubators--mainly, it fosters a spirit of entrepreneurship and offers economies of scale. But its key distinguishing feature is its ability to give start-ups preferential access to a network of potential partners. Such incubators institutionalize their networking--they have systems in place to encourage networking, helping start-ups, for example, to meet with potential business allies. That doesn't mean incubatees get preferential treatment; it means only that they have built-in access to partnerships that might not have existed without the incubator. Even with this advantage, however, networked incubators can easily follow the road to ruin. To avoid failure, they must create a portfolio of companies and advisers that their incubatees can leverage. That can be done by strategically investing in portfolio firms and by enlisting a large set of business allies. It can also be done by establishing connections and relationships that are anchored more to the incubator than to particular individuals.

  15. Active noise control for infant incubators.

    PubMed

    Yu, Xun; Gujjula, Shruthi; Kuo, Sen M

    2009-01-01

    This paper presents an active noise control system for infant incubators. Experimental results show that global noise reduction can be achieved for infant incubator ANC systems. An audio-integration algorithm is presented to introduce a healthy audio (intrauterine) sound with the ANC system to mask the residual noise and soothe the infant. Carbon nanotube based transparent thin film speaker is also introduced in this paper as the actuator for the ANC system to generate the destructive secondary sound, which can significantly save the congested incubator space and without blocking the view of doctors and nurses.

  16. The incubation period in sterility testing.

    PubMed

    Bathgate, H; Lazzari, D; Cameron, H; McKay, D

    1993-01-01

    Sterility test results gathered over a ten year period have been analysed to determine the effects of the incubation period. Overall there was no difference between the membrane filtration test and direct inoculation in the time required for visible growth of contaminants. Growth occurred earlier if products had no preservative or antimicrobial substances. However use of the membrane filtration method did not significantly enhance the efficiency of detection at seven days incubation. Regardless of the nature of the product or the method of test an unacceptable proportion of contaminants would be missed by limiting incubation to seven days.

  17. Evaluation of incubation time for dermatophytes cultures.

    PubMed

    Rezusta, Antonio; de la Fuente, Sonia; Gilaberte, Yolanda; Vidal-García, Matxalen; Alcalá, Leticia; López-Calleja, Ana; Ruiz, Maria Angeles; Revillo, Maria José

    2016-07-01

    In general, it is recommended to incubate dermatophytes cultures for a minimum of 4 weeks. Several aspects of routine fungal cultures should be evaluated in order to implement appropriate and necessary changes. The aim of this study was to determine the optimum incubation time for routine dermatophytes cultures, analysing the time to find first fungal growth by visual observation. We recorded the time when the initial growth was detected for all dermatophyte isolates during a 4-year period. A total of 5459 dermatophyte cultures were submitted to our laboratory. From the total cultures, only 16 (1.42%) isolates were recovered over/after 17 days of incubation and only three dermatophyte species were recovered over 17 days. Fourteen isolates belong to Trichophyton rubrum, one isolate to Trichophyton mentagrophytes complex and one isolate to Epidermophyton floccosum. We concluded that an incubation period of 17 days is enough to establish a microbiological diagnosis of dermatophytosis. © 2016 Blackwell Verlag GmbH.

  18. Neurobiology of the incubation of drug craving

    PubMed Central

    Pickens, Charles L.; Airavaara, Mikko; Theberge, Florence; Fanous, Sanya; Hope, Bruce T.; Shaham, Yavin

    2011-01-01

    It was suggested in 1986 that cue-induced drug craving in cocaine addicts progressively increases over the first several weeks of abstinence and remains high for extended periods. During the last decade, investigators have identified an analogous incubation phenomenon in rodents, in which time-dependent increases in cue-induced drug seeking are observed after withdrawal from intravenous cocaine self-administration. Such an incubation of drug craving is not specific to cocaine, as similar findings have been observed after self-administration of heroin, nicotine, methamphetamine, and alcohol in rats. In this review, we discuss recent results that have identified important brain regions involved in the incubation of drug craving, as well as evidence for the underlying cellular mechanisms. Understanding the neurobiology of the incubation of drug craving in rodents is likely to have significant implications for furthering our understanding of brain mechanisms and circuits that underlie drug craving in human addicts. PMID:21764143

  19. Air temperature recordings in infant incubators.

    PubMed Central

    Aynsley-Green, A; Roberton, N R; Rolfe, P

    1975-01-01

    Air temperatures were continuously recorded inside four incubators with proportional heating control and six incubators with on/off heating cycles, during routine use. The air temperatures in the former were constant throughout, with a gradient between the roof and above-mattress air temperature not exceeding 1 degree C. In contrast, the recordings from the latter models showed a regular cyclical oscillation, the duration of the cycle varying from 14 to 44 minutes. Each incubator had a characteristic profile. The roof air temperature could vary by as much as 7-1 degrees C and the above-mattress air temperature by as much as 2-6 degrees C during the cycle. The oscillation persisted in the air temperatures recorded inside an open-ended hemicylindrical heat shield when used inside these incubators, but was markedly reduced inside a closed-ended heat shield, Carbon dioxide concentration did not increase significantly inside the latter. Images FIG. 1 FIG. 2 PMID:1147654

  20. Don't wait to incubate: immediate versus delayed incubation in divergent thinking.

    PubMed

    Gilhooly, Kenneth J; Georgiou, George J; Garrison, Jane; Reston, Jon D; Sirota, Miroslav

    2012-08-01

    Previous evidence for the effectiveness of immediate incubation in divergent creative tasks has been weak, because earlier studies exhibited a range of methodological problems. This issue is theoretically important, as a demonstration of the effects of immediate incubation would strengthen the case for the involvement of unconscious work in incubation effects. For the present experiment, we used a creative divergent-thinking task (alternative uses) in which separate experimental groups had incubation periods that were either delayed or immediate and that consisted of either spatial or verbal tasks. Control groups were tested without incubation periods, and we carried out checks for intermittent conscious work on the target task during the incubation periods. The results showed significant incubation effects that were stronger for immediate than for delayed incubation. Performance was not different between the verbal and spatial incubation conditions, and we found no evidence for intermittent conscious working during the incubation periods. These results support a role for unconscious work in creative divergent thinking, particularly in the case of immediate incubation.

  1. A theoretical model of infant incubator dynamics.

    PubMed

    Simon, B N; Reddy, N P; Kantak, A

    1994-08-01

    A spatially lumped mathematical model was developed and used for a computer simulation of the neonate-incubator system for parametric analysis of the factors that influence neonatal thermo-regulation. The simulation examined the effects of the following parameters: (1) size of the infant; (2) respiratory rate; (3) metabolic rate; (4) heart rate; (5) thermal properties of the mattress; (6) specific heat capacity of the incubator wall; (7) air flow rate; (8) heater control mechanisms.

  2. National Security Technology Incubation Strategic Plan

    SciTech Connect

    None, None

    2008-02-26

    This strategic plan contains information on the vision, mission, business and technology environment, goals, objectives, and incubation process of the National Security Technology Incubation Program (NSTI) at Arrowhead Center. The development of the NSTI is a key goal of the National Security Preparedness Project (NSPP). Objectives to achieve this goal include developing incubator plans (strategic, business, action, and operations), creating an incubator environment, creating a support and mentor network for companies in the incubator program, attracting security technology businesses to the region, encouraging existing business to expand, initiating business start-ups, evaluating products and processes of the incubator program, and achieving sustainability of the incubator program. With the events of 9/11, the global community faces ever increasing and emerging threats from hostile groups determined to rule by terror. According to the National Nuclear Security Administration (NNSA) Strategic Plan, the United States must be able to quickly respond and adapt to unanticipated situations as they relate to protection of our homeland and national security. Technology plays a key role in a strong national security position, and the private business community, along with the national laboratories, academia, defense and homeland security organizations, provide this technology. Fostering innovative ideas, translated into relevant technologies answering the needs of NNSA, is the purpose of the NSTI. Arrowhead Center of New Mexico State University is the operator and manager of the NSTI. To develop the NSTI, Arrowhead Center must meet the planning, development, execution, evaluation, and sustainability activities for the program and identify and incubate new technologies to assist the NNSA in meeting its mission and goals. Technology alone does not give a competitive advantage to the country, but the creativity and speed with which it is employed does. For a company to

  3. What is the incubation period for listeriosis?

    PubMed Central

    2013-01-01

    Background Listeriosis is a foodborne infection with a low incidence but a high case fatality rate. Unlike common foodborne diseases, the incubation period can be long. The first incubation periods were documented during a large listeriosis outbreak published in 1987 by Linnan and al. in the New England Journal of Medicine (range: 3 days to 70 days). Data on the incubation period of listeriosis are scarce. Our study aim was to estimate precisely the incubation period of listeriosis using available data since 1987. Methods We estimated the incubation period of listeriosis using available published data and data from outbreak investigations carried out by the French National Institute for Public Health Surveillance. We selected cases with an incubation period calculated when a patient had a single exposure to a confirmed food source contaminated by Listeria monocytogenes. Results We identified 37 cases of invasive listeriosis (10 cases with central nervous system involvement (CNS cases), 15 bacteraemia cases and 12 pregnancy-associated cases) and 9 outbreaks with gastroenteritis. The overall median incubation period of invasive listeriosis was 8 days (range: 1–67 days) and differed significantly by clinical form of the disease (p<0.0001). A longer incubation period was observed for pregnancy-associated cases (median: 27.5 days; range: 17–67 days) than for CNS cases (median: 9 days; range: 1–14 days) and for bacteraemia cases (median: 2 days; range: 1–12 days). For gastroenteritis cases, the median incubation period was 24 hours with variation from 6 to 240 hours. Conclusions This information has implications for the investigation of food borne listeriosis outbreaks as the incubation period is used to determine the time period for which a food history is collected. We believe that, for listeriosis outbreaks, adapting the exposure window for documenting patients’ food histories in accordance with the clinical form of infection will facilitate the

  4. National Security Technology Incubator Business Plan

    SciTech Connect

    None, None

    2007-12-31

    This document contains a business plan for the National Security Technology Incubator (NSTI), developed as part of the National Security Preparedness Project (NSPP) and performed under a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This business plan describes key features of the NSTI, including the vision and mission, organizational structure and staffing, services, evaluation criteria, marketing strategies, client processes, a budget, incubator evaluation criteria, and a development schedule. The purpose of the NSPP is to promote national security technologies through business incubation, technology demonstration and validation, and workforce development. The NSTI will focus on serving businesses with national security technology applications by nurturing them through critical stages of early development. The vision of the NSTI is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety, security, and protection of the homeland. The NSTI is operated and managed by the Arrowhead Center, responsible for leading the economic development mission of New Mexico State University (NMSU). The Arrowhead Center will recruit business with applications for national security technologies recruited for the NSTI program. The Arrowhead Center and its strategic partners will provide business incubation services, including hands-on mentoring in general business matters, marketing, proposal writing, management, accounting, and finance. Additionally, networking opportunities and technology development assistance will be provided.

  5. An MR-compatible neonatal incubator

    PubMed Central

    Paley, M N J; Hart, A R; Lait, M; Griffiths, P D

    2012-01-01

    Objectives To develop a neonatal MR-compatible incubator for transporting babies between a neonatal intensive care unit and an MRI unit that is within the same hospital but geographically separate. Methods The system was strapped to a standard MR-compatible patient trolley, which provides space for resuscitation outside the incubator. A constant-temperature exothermic heat pad was used to maintain temperature together with a logging fluoro-optic temperature monitor and alarm system. The system has been designed to accommodate standard knee-sized coils from the major MR manufacturers. The original incubator was constructed from carbon fibre, but this required modification to prevent radiofrequency shading artefacts due to the conducting properties of the carbon fibre. A high-tensile polyester material was used, which combined light weight with high impact strength. The system could be moved onto the patient bed with the coils and infant in place by one technologist. Results Studies in eight neonatal patients produced high quality 1.5 T MR images with low motion artefacts. The incubator should also be compatible with imaging in 3 T MR systems, although further work is required to establish this. Images were acquired using both rapid and high-resolution sequences, including three-dimensional volumes, proton spectra and diffusion weighting. Conclusion The incubator provides a safe, quiet environment for neonates during transport and imaging, at low cost. PMID:22167517

  6. National Security Technology Incubator Action Plan

    SciTech Connect

    None, None

    2008-02-28

    This report documents the action plan for developing the National Security Technology Incubator (NSTI) program for southern New Mexico. The NSTI program is being developed as part of the National Security Preparedness Project (NSPP), funded by Department of Energy (DOE)/National Nuclear Security Administration (NNSA). This action plan serves as a tool in measuring progress in the development process and delivery of services for the NSTI program. Continuous review and evaluation of the action plan is necessary in the development process of the NSTI. The action plan includes detailed steps in developing the NSTI program based on recommended best practices in incubator development by the National Business Incubation Association (NBIA). Included are tasks required to implement the NSTI, developed within a work breakdown structure. In addition, a timeline is identified for each task.

  7. National Security Technology Incubator Operations Plan

    SciTech Connect

    2008-04-30

    This report documents the operations plan for developing the National Security Technology Incubator (NSTI) program for southern New Mexico. The NSTI program will focus on serving businesses with national security technology applications by nurturing them through critical stages of early development. The NSTI program is being developed as part of the National Security Preparedness Project (NSPP), funded by Department of Energy (DOE)/National Nuclear Security Administration (NNSA). The operation plan includes detailed descriptions of the structure and organization, policies and procedures, scope, tactics, and logistics involved in sustainable functioning of the NSTI program. Additionally, the operations plan will provide detailed descriptions of continuous quality assurance measures based on recommended best practices in incubator development by the National Business Incubation Association (NBIA). Forms that assist in operations of NSTI have been drafted and can be found as an attachment to the document.

  8. Methanogenesis in subglacial sediments.

    PubMed

    Boyd, Eric S; Skidmore, Mark; Mitchell, Andrew C; Bakermans, Corien; Peters, John W

    2010-10-01

    Methanogenic archaea have a unique role in Earth's global carbon cycle as producers of the greenhouse gas methane (CH4 ). However, despite the fact that ice covers 11% of Earth's continental landmass, evidence for methanogenic activity in subglacial environments has yet to be clearly demonstrated. Here we present genetic, biochemical and geochemical evidence indicative of an active population of methanogens associated with subglacial sediments from Robertson Glacier (RG), Canadian Rockies. Porewater CH4 was quantified in two subglacial sediment cores at concentrations of 16 and 29 ppmv. Coenzyme M (CoM), a metabolic biomarker for methanogens, was detected at a concentration of 1.3 nmol g sediment(-1) corresponding to ∼3 × 10(3) active cells g sediment(-1) . Genetic characterization of communities associated with subglacial sediments indicated the presence of several archaeal 16S rRNA and methyl CoM reductase subunit A (mcrA) gene phylotypes, all of which were affiliated with the euryarchaeal order Methanosarcinales. Further, CH4 was produced at 9-51 fmol g dry weight sediment(-1)  h(-1) in enrichment cultures of RG sediments incubated at 4°C. Collectively, these findings have important implications for the global carbon cycle in light of recent estimates indicating that the Earth's subglacial biome ranges from 10(4) to 10(6)  km(3) sediment.

  9. [Collagenase production increases in rheumatoid arthritis and osteoarthritis synoviocytes incubated].

    PubMed

    Montrull, H L; Brizuela, N Y; Demurtas, S L; Strusberg, A M; Spitale, L S; Meirovich, C I

    2000-01-01

    Cartilage is a specialized connective tissue. It contains few cells into an extracell matrix. The matrix mainly constituents are collagen and proteoglycans. Its degradation depends on synoviocytes activity, that secrete metalloproteases, agents to proteoglycans catabolism. There are two types of synoviocytes: macrophagics (type "A:') and fibroblastics (type "B"). The proteoglycan destruction can be LT-dependent or LT-independent. The aim of this work is synoviocytes function ex vívo study, free immune system influence. In order to do it, heparinized synovial fluid samples were obtained from 6 osteoarthritic (OA) and 6 arthritic (RA) both sex untreated patients, diagnosed according ACR criteria, which disease duration was longer than 6 months. Patients average age was 70 +/- 2 years. Control samples were synovial fluid from traumatic arthritis or non inflammatory bone-muscle pathology. Synovial fluid was centifugated at 1500 g for 30 minutes to isolate synoviocytes. Sediment containing cells was 6 hs incubed with Dulbecco-Eagles media, that has HEPES Gibco (26 mM); NaHCO3 (0.5 g/I); glutamine (2 mM), streptomicine (100 mg/l), G-penicillin (1 U/ml); anphotericine B (2.5 mg/l). Cells calification and viability were cytopathologically determined. Before and after incubation, collagenase activity was measured by ELISA-double-sandwich, using 10 micrograms/ml monoclonal anti-MMPs in phosphate-buffer-saline. The antigen-antibody complex production with inespecific proteins was blocked by bovine seric albumine. Streptavidin peroxidase was added and washed with 2,2,azin,di(3-ethyl-benztazoilinsuiphonic) acid to develop color. The link of labeled antibody by absorbance at 410 nm was determined in ELISA-spectrophothometer. RA patients earlier MMPs synoviocytes production was 1373 +/- 115 ng/ml. Then 6 hs incubation 2143 +/- 132 ng/ml was reached. The increase (56%) had high significance (p < 0.0001). OA earlier MMPs cells production was 276 +/- 23 ng/ml, but after incubation

  10. Prolonged incubation behavior by a marbled godwit

    USGS Publications Warehouse

    Higgins, K.F.

    1974-01-01

    On 9 May 1972 I flushed a Marbled Godwit (Limosa fedoa) from a nest containing four eggs in a large field of mulched wheat stubble in northwestern Stutsman County, North Dakota. I revisited the nest on 31 May and on 7, 9, 12, 15, 16, 20, and 21 June, and found an incubating adult on the nest during all visits except 21 June. Another adult was seen near the nest site only on 9 May. On 12 June the eggs looked rotten, and the incubating bird seemed to have a crippled leg. On 21 June Ring-billed Gulls (Larus delawarensis) destroyed the eggs.

  11. [Audit "Toys and incubators in neonatology"].

    PubMed

    Raginel, T; Bigoin-Dupont, M; Aguelon, V; Fines-Guyon, M; Guillemin, M G

    2009-08-01

    Owing to an increase in nosocomial septicaemias in the Neonatalogy department, we've judged it necessary to consider the role of items not linked to the nursing procedures, and nevertheless present in the incubators, as well as the hygiene techniques applied to them. In November 2007, we've made a longitudinal prospective study consisting in an observation audit during 3 successive days, observing every single incubator with a newborn baby. In each incubator, we've checked whether there were or not items that weren't required by the nursing activities, along with their characteristics and the hygiene procedures applied to them. We've inquired as well whether the parents and the nursing staff knew and applied the required hygiene procedures. In 13 among the 17 incubators under survey, at least one item not strictly required by the nursing procedures could be found. The number of toys in each incubator varied from seven to one. Among the 33 toys surveyed, 24 (73%) of them showed a score of maximum fluffiness (4 out of 4), and only 10 wore labels giving cleansing advice from the manufacturers. Without any record about the cleaning/disinfecting of the toys brought in hospital, we have observed that the parents were given varied advice about how to clean the toys at home before putting them in the incubators (only four parents had washed the toys in their washing machines at more than 30 degrees C). From the six samples under scrutiny, all the culture results were tested positive. In particular two of the soft toys sampled were found infected by a Pseudomonas oryzihabitans. These particular toys belonged to a baby who had been diagnosed with a septicaemia characterized by hemocultures positive to a P. oryzihabitans of a different strain. Our audit has been an efficient reminder that any item put in an incubator is a potential vector and reservoir of pathogen organisms. After a general feedback towards the department staff, the medical staff then prescribed to

  12. The Benthic Exchange of O2, N2 and Dissolved Nutrients Using Small Core Incubations

    PubMed Central

    Owens, Michael S.; Cornwell, Jeffrey C.

    2016-01-01

    The measurement of sediment-water exchange of gases and solutes in aquatic sediments provides data valuable for understanding the role of sediments in nutrient and gas cycles. After cores with intact sediment-water interfaces are collected, they are submerged in incubation tanks and kept under aerobic conditions at in situ temperatures. To initiate a time course of overlying water chemistry, cores are sealed without bubbles using a top cap with a suspended stirrer. Time courses of 4-7 sample points are used to determine the rate of sediment water exchange. Artificial illumination simulates day-time conditions for shallow photosynthetic sediments, and in conjunction with dark incubations can provide net exchanges on a daily basis. The net measurement of N2 is made possible by sampling a time course of dissolved gas concentrations, with high precision mass spectrometric analysis of N2:Ar ratios providing a means to measure N2 concentrations. We have successfully applied this approach to lakes, reservoirs, estuaries, wetlands and storm water ponds, and with care, this approach provides valuable information on biogeochemical balances in aquatic ecosystems. PMID:27583833

  13. The Benthic Exchange of O2, N2 and Dissolved Nutrients Using Small Core Incubations.

    PubMed

    Owens, Michael S; Cornwell, Jeffrey C

    2016-08-03

    The measurement of sediment-water exchange of gases and solutes in aquatic sediments provides data valuable for understanding the role of sediments in nutrient and gas cycles. After cores with intact sediment-water interfaces are collected, they are submerged in incubation tanks and kept under aerobic conditions at in situ temperatures. To initiate a time course of overlying water chemistry, cores are sealed without bubbles using a top cap with a suspended stirrer. Time courses of 4-7 sample points are used to determine the rate of sediment water exchange. Artificial illumination simulates day-time conditions for shallow photosynthetic sediments, and in conjunction with dark incubations can provide net exchanges on a daily basis. The net measurement of N2 is made possible by sampling a time course of dissolved gas concentrations, with high precision mass spectrometric analysis of N2:Ar ratios providing a means to measure N2 concentrations. We have successfully applied this approach to lakes, reservoirs, estuaries, wetlands and storm water ponds, and with care, this approach provides valuable information on biogeochemical balances in aquatic ecosystems.

  14. Incubation Period of Hantavirus Cardiopulmonary Syndrome

    PubMed Central

    Valdivieso, Francisca; Mertz, Gregory; Castillo, Constanza; Belmar, Edith; Delgado, Iris; Tapia, Mauricio; Ferrés, Marcela

    2006-01-01

    The potential incubation period from exposure to onset of symptoms was 7–39 days (median 18 days) in 20 patients with a defined period of exposure to Andes virus in a high-risk area. This period was 14–32 days (median 18 days) in 11 patients with exposure for <48 hours. PMID:16965713

  15. Pavlovian Incubation of US Signal Value

    ERIC Educational Resources Information Center

    Goddard, Murray J.

    2013-01-01

    Four experiments with rats examined Pavlovian incubation, in which responding increases when Pavlovian conditioning is followed by a testing delay. In a within-subjects design, Experiment 1 first showed that when a single food pellet unconditioned stimulus (US) signaled the delivery of three additional pellets, responding after the single US was…

  16. Development of an Educational Innovation Incubator

    ERIC Educational Resources Information Center

    Jurkowski, Odin; Kerr, Shantia

    2010-01-01

    The Educational Innovation Incubator is an electronic classroom designed to evolve at the University of Central Missouri. This newly enacted endeavor is a place for faculty and students to combine the scholarship of teaching and learning into their courses by experimenting with the latest technologies in education. This paper describes the process…

  17. Problems associated with incubation and hatching

    USGS Publications Warehouse

    Olsen, G.H.

    1989-01-01

    There are numerous problems in incubation and hatching that can result in a dead embryo. Many of these problems can be prevented if the proper diagnosis of embryo mortality is made and the client instructed on how to prevent the probem in the future. This session is designed to give the avian practitioner an introduction to this area.

  18. 21 CFR 880.5400 - Neonatal incubator.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Neonatal incubator. 880.5400 Section 880.5400 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES GENERAL HOSPITAL AND PERSONAL USE DEVICES General Hospital and Personal Use Therapeutic...

  19. 21 CFR 866.2540 - Microbiological incubator.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 8 2014-04-01 2014-04-01 false Microbiological incubator. 866.2540 Section 866.2540 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Microbiology Devices § 866.2540 Microbiological...

  20. 21 CFR 866.2540 - Microbiological incubator.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 8 2012-04-01 2012-04-01 false Microbiological incubator. 866.2540 Section 866.2540 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Microbiology Devices § 866.2540 Microbiological...

  1. 21 CFR 866.2540 - Microbiological incubator.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 8 2013-04-01 2013-04-01 false Microbiological incubator. 866.2540 Section 866.2540 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Microbiology Devices § 866.2540 Microbiological...

  2. Development of an Educational Innovation Incubator

    ERIC Educational Resources Information Center

    Jurkowski, Odin; Kerr, Shantia

    2010-01-01

    The Educational Innovation Incubator is an electronic classroom designed to evolve at the University of Central Missouri. This newly enacted endeavor is a place for faculty and students to combine the scholarship of teaching and learning into their courses by experimenting with the latest technologies in education. This paper describes the process…

  3. Pavlovian Incubation of US Signal Value

    ERIC Educational Resources Information Center

    Goddard, Murray J.

    2013-01-01

    Four experiments with rats examined Pavlovian incubation, in which responding increases when Pavlovian conditioning is followed by a testing delay. In a within-subjects design, Experiment 1 first showed that when a single food pellet unconditioned stimulus (US) signaled the delivery of three additional pellets, responding after the single US was…

  4. 21 CFR 866.2540 - Microbiological incubator.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Microbiological incubator. 866.2540 Section 866.2540 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES IMMUNOLOGY AND MICROBIOLOGY DEVICES Microbiology Devices § 866.2540 Microbiological...

  5. Incubational domain characterization in lightly doped ceria

    SciTech Connect

    Li Zhipeng; Mori, Toshiyuki; John Auchterlonie, Graeme; Zou Jin; Drennan, John

    2012-08-15

    Microstructures of both Gd- and Y-doped ceria with different doping level (i.e., 10 at% and 25 at%) have been comprehensively characterized by means of high resolution transmission electron microscopy and selected area electron diffraction. Coherent nano-sized domains can be widely observed in heavily doped ceria. Nevertheless, it was found that a large amount of dislocations actually exist in lightly doped ceria instead of heavily doped ones. Furthermore, incubational domains can be detected in lightly doped ceria, with dislocations located at the interfaces. The interactions between such linear dislocations and dopant defects have been simulated accordingly. As a consequence, the formation mechanism of incubational domains is rationalized in terms of the interaction between intrinsic dislocations of doped ceria and dopant defects. This study offers the insights into the initial state and related mechanism of the formation of nano-sized domains, which have been widely observed in heavily rare-earth-doped ceria in recent years. - Graphical abstract: Interactions between dislocations and dopants lead to incubational domain formation in lightly doped ceria. Highlights: Black-Right-Pointing-Pointer Microstructures were characterized in both heavily and light Gd-/Y-doped ceria. Black-Right-Pointing-Pointer Dislocations are existed in lightly doped ceria rather than heavily doped one. Black-Right-Pointing-Pointer Interactions between dislocations and dopant defects were simulated. Black-Right-Pointing-Pointer Formation of dislocation associated incubational domain is rationalized.

  6. Mid Columbia sturgeon incubation and rearing study

    USGS Publications Warehouse

    Parsley, Michael J.; Kofoot, Eric; Blubaugh, J

    2011-01-01

    This report describes the results from the second year of a three-year investigation on the effects of different thermal regimes on incubation and rearing early life stages of white sturgeon Acipenser transmontanus. The Columbia River has been significantly altered by the construction of dams resulting in annual flows and water temperatures that differ from historical levels. White sturgeon have been demonstrated to spawn in two very distinct sections of the Columbia River in British Columbia, Canada, which are both located immediately downstream of hydropower facilities. The thermal regimes differ substantially between these two areas. The general approach of this study was to incubate and rear white sturgeon early life stages under two thermal regimes; one mimicking the current, cool water regime of the Columbia River downstream from Revelstoke Dam, and one mimicking a warmer regime similar to conditions found on the Columbia River at the international border. Second-year results suggest that thermal regimes during incubation influence rate of egg development and size at hatch. Eggs incubated under the warm thermal regime hatched sooner than those incubated under the cool thermal regime. Mean length of free embryos at hatch was significantly different between thermal regimes with free embryos from the warm thermal regime being longer at hatch. However, free embryos from the cool thermal regime had a significantly higher mean weight at hatch. This is in contrast with results obtained during 2009. The rearing trials revealed that growth of fish reared in the cool thermal regime was substantially less than growth of fish reared in the warm thermal regime. The magnitude of mortality was greatest in the warm thermal regime prior to initiation of exogenous feeding, but chronic low levels of mortality in the cool thermal regime were higher throughout the period. The starvation trials showed that the fish in the warm thermal regime exhausted their yolk reserves faster

  7. The e-incubator: a magnetic resonance imaging-compatible mini incubator.

    PubMed

    Othman, Shadi F; Wartella, Karin; Sharghi, Vahid Khalilzad; Xu, Huihui

    2015-04-01

    The tissue engineering community has been vocal regarding the need for noninvasive instruments to assess the development of tissue-engineered constructs. Medical imaging has helped fulfill this role. However, specimens allocated to a test tube for imaging cannot be tested for a prolonged period or returned to the incubator. Therefore, samples are essentially wasted due to potential contamination and transfer in a less than optimal growth environment. In turn, we present a standalone, miniature, magnetic resonance imaging-compatible incubator, termed the e-incubator. This incubator uses a microcontroller unit to automatically sense and regulate physiological conditions for tissue culture, thus allowing for concurrent tissue culture and evaluation. The e-incubator also offers an innovative scheme to study underlying mechanisms related to the structural and functional evolution of tissues. Importantly, it offers a key step toward enabling real-time testing of engineered tissues before human transplantation. For validation purposes, we cultured tissue-engineered bone constructs for 4 weeks to test the e-incubator. Importantly, this technology allows for visualizing the evolution of temporal and spatial morphogenesis. In turn, the e-incubator can filter deficient constructs, thereby increasing the success rate of implantation of tissue-engineered constructs, especially as construct design grows in levels of complexity to match the geometry and function of patients' unique needs.

  8. The e-Incubator: A Magnetic Resonance Imaging-Compatible Mini Incubator

    PubMed Central

    Wartella, Karin; Khalilzad Sharghi, Vahid; Xu, Huihui

    2015-01-01

    The tissue engineering community has been vocal regarding the need for noninvasive instruments to assess the development of tissue-engineered constructs. Medical imaging has helped fulfill this role. However, specimens allocated to a test tube for imaging cannot be tested for a prolonged period or returned to the incubator. Therefore, samples are essentially wasted due to potential contamination and transfer in a less than optimal growth environment. In turn, we present a standalone, miniature, magnetic resonance imaging-compatible incubator, termed the e-incubator. This incubator uses a microcontroller unit to automatically sense and regulate physiological conditions for tissue culture, thus allowing for concurrent tissue culture and evaluation. The e-incubator also offers an innovative scheme to study underlying mechanisms related to the structural and functional evolution of tissues. Importantly, it offers a key step toward enabling real-time testing of engineered tissues before human transplantation. For validation purposes, we cultured tissue-engineered bone constructs for 4 weeks to test the e-incubator. Importantly, this technology allows for visualizing the evolution of temporal and spatial morphogenesis. In turn, the e-incubator can filter deficient constructs, thereby increasing the success rate of implantation of tissue-engineered constructs, especially as construct design grows in levels of complexity to match the geometry and function of patients' unique needs. PMID:25190214

  9. National Security Technology Incubation Project Continuation Plan

    SciTech Connect

    2008-09-30

    This document contains a project continuation plan for the National Security Technology Incubator (NSTI). The plan was developed as part of the National Security Preparedness Project (NSPP) funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This continuation plan describes the current status of NSTI (staffing and clients), long-term goals, strategies, and long-term financial solvency goals.The Arrowhead Center of New Mexico State University (NMSU) is the operator and manager of the NSTI. To realize the NSTI, Arrowhead Center must meet several performance objectives related to planning, development, execution, evaluation, and sustainability. This continuation plan is critical to the success of NSTI in its mission of incubating businesses with security technology products and services.

  10. Hatching a Theory of Incubation Effects

    DTIC Science & Technology

    1989-01-01

    attainment of insight. For example, Koestler (1964) tells how Benjamin Franklin originally wanted to test his theory that lightening was electricity by...cues (Judson et. al., 1956; Mendelsohn & Griswold, 1964) support the view that apparently irrelevant events can affect problem-solving behavior...one of the interrupted groups (Gall & Mendelsohn , 1967). The other failed to find incubation effects of any kind (Olton & Johnson, 1976). 3 In addition

  11. Space Station Biological Research Project Habitat: Incubator

    NASA Technical Reports Server (NTRS)

    Nakamura, G. J.; Kirven-Brooks, M.; Scheller, N. M.

    2001-01-01

    Developed as part of the suite of Space Station Biological Research Project (SSBRP) hardware to support research aboard the International Space Station (ISS), the Incubator is a temperature-controlled chamber, for conducting life science research with small animal, plant and microbial specimens. The Incubator is designed for use only on the ISS and is transported to/from the ISS, unpowered and without specimens, in the Multi-Purpose Logistics Module (MPLM) of the Shuttle. The Incubator interfaces with the three SSBRP Host Systems; the Habitat Holding Racks (HHR), the Life Sciences Glovebox (LSG) and the 2.5 m Centrifuge Rotor (CR), providing investigators with the ability to conduct research in microgravity and at variable gravity levels of up to 2-g. The temperature within the Specimen Chamber can be controlled between 4 and 45 C. Cabin air is recirculated within the Specimen Chamber and can be exchanged with the ISS cabin at a rate of approximately equal 50 cc/min. The humidity of the Specimen Chamber is monitored. The Specimen Chamber has a usable volume of approximately equal 19 liters and contains two (2) connectors at 28v dc, (60W) for science equipment; 5 dedicated thermometers for science; ports to support analog and digital signals from experiment unique sensors or other equipment; an Ethernet port; and a video port. It is currently manifested for UF-3 and will be launched integrated within the first SSBRP Habitat Holding Rack.

  12. Space Station Biological Research Project Habitat: Incubator

    NASA Technical Reports Server (NTRS)

    Nakamura, G. J.; Kirven-Brooks, M.; Scheller, N. M.

    2001-01-01

    Developed as part of the suite of Space Station Biological Research Project (SSBRP) hardware to support research aboard the International Space Station (ISS), the Incubator is a temperature-controlled chamber, for conducting life science research with small animal, plant and microbial specimens. The Incubator is designed for use only on the ISS and is transported to/from the ISS, unpowered and without specimens, in the Multi-Purpose Logistics Module (MPLM) of the Shuttle. The Incubator interfaces with the three SSBRP Host Systems; the Habitat Holding Racks (HHR), the Life Sciences Glovebox (LSG) and the 2.5 m Centrifuge Rotor (CR), providing investigators with the ability to conduct research in microgravity and at variable gravity levels of up to 2-g. The temperature within the Specimen Chamber can be controlled between 4 and 45 C. Cabin air is recirculated within the Specimen Chamber and can be exchanged with the ISS cabin at a rate of approximately equal 50 cc/min. The humidity of the Specimen Chamber is monitored. The Specimen Chamber has a usable volume of approximately equal 19 liters and contains two (2) connectors at 28v dc, (60W) for science equipment; 5 dedicated thermometers for science; ports to support analog and digital signals from experiment unique sensors or other equipment; an Ethernet port; and a video port. It is currently manifested for UF-3 and will be launched integrated within the first SSBRP Habitat Holding Rack.

  13. Methods to measure sedimentation of spawning gravels

    Treesearch

    Thomas E. Lisle; Rand E. Eads

    1991-01-01

    Sediment transport occurring after spawning can cause scour of incubating embryos and infiltration of fine sediment into spawning gravel, decreasing intergravel flow and preventing hatched fry from emerging from the gravel. Documentation of these effects requires measuring gravel conditions before and after high flow periods and combining methods to record scour and...

  14. Parasitological diagnosis of onchocerciasis: comparisons of incubation media and incubation times for skin snips.

    PubMed

    Collins, R C; Brandling-Bennett, A D; Holliman, R B; Campbell, C C; Darsie, R F

    1980-01-01

    Tissue culture fluid NCTC 135 (Hank's base) was compared to water and to saline as incubation media for the detection of microfilariae of Onchocerca volvulus in skin snips. NCTC 135 allowed detection of significantly more positive persons than did water (P less than 0.001) or saline (P less than 0.05) when two snips per person were incubated for periods of 0.5 or 24 hours. In addition, snips containing microfilariae were incubated in NCTC 135 or in saline and the number of emerged microfilariae was determined at various intervals of time up to 24 hours. After incubation, snips were either fixed in 10% formalin, serially sectioned, and the microfilariae counted, or they were digested in collagenase solution to free unemerged microfilaire. Of the total number of microfilariae present in the snips, 43.9% +/- 18.5, 80.2% +/- 22.2, 83.0% +/- 19.5, and 85.3% +/- 18.0 had emerged by 0.5, 4, 8, and 24 hours of incubation, respectively. Of the microfilariae that remained in the skin after incubation, most were located deep in the dermis.

  15. An Introduction to Developing an Urban Business Incubator.

    ERIC Educational Resources Information Center

    Montgomery, James; And Others

    Designed to provide a brief overview of the considerations involved in establishing a small business incubator, this guide presents information on incubator classification, funding methods, incubator operation techniques, and two-year college involvement in the formation of a working business incubator. Part 1 describes a small business incubator…

  16. Managing incubation: where are we and why?

    PubMed

    Hulet, R M

    2007-05-01

    An improvement in the rate of gain of broilers during the past 20 yr has made the incubation period a larger percentage of the overall growth period for commercial poultry and has played a larger role in improving growth efficiency. Recently, hatchery managers have observed concomitant decreases in hatchability and chick performance, whereas temperature profiles in the setters and hatchers have not changed appreciably. Therefore, these decreases in hatchability, first week livability, hatch time, and overall chick quality have precipitated the need for a change in the way we manage our hatcheries. Historically, the broiler industry within the United States and United Kingdom have successfully utilized multistage incubation. Currently, the use of single-stage incubation in Europe has increased, because research has shown this system more precisely meets the developmental demands of the embryos. Therefore, research has focused on multi- and single-stage hatcheries to determine the proper hatch conditions necessary to optimize embryonic development, chick quality, and their effects on posthatch performance. Studies have shown how increases in shell temperature, independent of machine temperature, can result in increases in embryonic mortality, decreased heart weight as a percentage of chick weight, decreased yolk-free BW, and increased yolk weight. Factors that have contributed to the increase in heat stress on developing embryos include egg size, air flow, age of the embryo, and breeder flock fertility. Other studies have shown that the variation in chick performance can be explained by heat stress in the hatchery. Therefore, symposium presentations will show how improvements in our knowledge of the requirements of the developing avian embryo can help improve not only hatchability and first week livability but posthatch performance.

  17. Parathion alters incubation behavior of laughing gulls

    USGS Publications Warehouse

    White, D.H.; Mitchell, C.A.; Hill, E.F.

    1983-01-01

    One member of each pair of incubating laughing gulls at 9 nests was trapped, orally dosed with either 6 mg/kg parathion in corn oil or corn oil alone, and marked about the neck with red dye. Each nest was marked with a numbered stake and the treatment was recorded. A pilot study with captive laughing gulls had determined the proper dosage of parathion that would significantly inhibit their brain AChE activity (about 50% of normal) without overt signs of poisoning. After dosing, birds were released and the nests were observed for 2 1/2 days from a blind on the nesting island. The activities of the birds at each marked nest were recorded at 10-minute intervals. Results indicated that on the day of treatment there was no difference (P greater than 0.05, Chi-square test) in the proportion of time spent on the nest between treated and control birds. However, birds dosed with 6 mg/kg parathion spent significantly less time incubating on days 2 and 3 than did birds receiving only corn oil. By noon on the third day, sharing of nest duties between pair members in the treated group had approached normal, indicating recovery from parathion intoxication. These findings suggest that sublethal exposure of nesting birds to an organophosphate (OP) insecticide, such as parathion, may result in decreased nest attentiveness, thereby making the clutch more susceptible to predation or egg failure. Behavioral changes caused by sublethal OP exposure could be especially detrimental in avian species where only one pair member incubates or where both members are exposed in species sharing nest duties.

  18. Physics Incubator at Kansas State University

    NASA Astrophysics Data System (ADS)

    Flanders, Bret; Chakrabarti, Amitabha

    Funded by a major private endowment, the physics department at Kansas State University has recently started a physics incubator program that provides support to research projects with a high probability of commercial application. Some examples of these projects will be discussed in this talk. In a parallel effort, undergraduate physics majors and graduate students are being encouraged to work with our business school to earn an Entrepreneurship minor and a certification in Entrepreneurship. We will discuss how these efforts are promoting a ``culture change'' in the department. We will also discuss the advantages and the difficulties in running such a program in a Midwest college town.

  19. [Salmonella identification after incubation in the soil].

    PubMed

    Bakhrouf, A; Dhiaf, A; Chnity, N; Bahri, M; Mechergui, F; Said, A

    2002-01-01

    We have tried to study the fate of Salmonella strains in soil. We have looked at their biochemical modifications during their evolution to dormant state and during their reviviscence. The beta galactosidase which is negative in the parent strain became positive after two weeks of cells starvation in soil. Stressed cells became able to produce acetoin. Some stressed cells did not produce the lysine decarboxylase, which is positive in parent cells. These modifications are reversible and depend on cultural conditions. Incubation of stressed cells in nutrient broth for more than four weeks helped them to reverse to normal forms. Simultaneous search for atypical Salmonella was done in dissect sludge of a domestic wastewater treatment plant and in soil irrigated with treated water. Atypical strains of Salmonella are found. We have seen that, after incubation in nutrient broth for more than four weeks, atypical strains characters evolved generally to their parental characters. All modifications of Salmonella in soil samples can make their identification very difficult and perhaps impossible.

  20. [Studies on noise stress caused by infant incubators (author's transl)].

    PubMed

    Gädeke, R; Petersen, P; de Liddle, I W

    1979-03-01

    The following acoustic effects of incubators were investigated: Noise level and vibration measurements inside incubators. Noise emanation into the vicinity of incubators. Deadening of incubator noise by the hood. The noise intensity inside the incubators was also registered under conditions of intensive care using sound emitting therapeutic and monitoring equipment. The results show that the noise level of incubator motors can be tolerated. This applies to well-serviced incubators only, however. The hood muffles outside noise, particularly in the range of greatest hearing acuity. But there is no protection against noisy intensive-care systems within the incubator. The infants own noise production is considered to contribute substantially to the noise within an incubator.

  1. Factors related to the artificial incubation of wild bird eggs

    USGS Publications Warehouse

    Klimstra, Jon D.; Stebbins, Katherine R.; Heinz, Gary H.; Hoffman, David J.; Kondrad, Shannon R.

    2009-01-01

    Attempts to artificially incubate the eggs of wild birds have failed in many respects in duplicating the success of natural incubation. As part of a larger study we had the opportunity to artificially incubate the eggs of 22 species of birds (three domestic and 19 wild species). We report the successes and failures associated with artificial incubation of these eggs. Moisture loss varied widely, not only for Orders of birds but for similar species within an Order. Overall hatching success and success through to 90% of incubation varied for different Orders and for similar species. Humidity and temperature are critical elements in the artificial incubation of wild bird eggs and must be closely monitored throughout incubation to ensure the best possible chance of hatching. Even when these elements are addressed, artificial incubation still can not duplicate the success of incubation by the parent.

  2. Accuracy of egg flotation throughout incubation to determine embryo age and incubation day in waterbird nests

    USGS Publications Warehouse

    Ackerman, Joshua T.; Eagles-Smith, Collin A.

    2010-01-01

    Floating bird eggs to estimate their age is a widely used technique, but few studies have examined its accuracy throughout incubation. We assessed egg flotation for estimating hatch date, day of incubation, and the embryo's developmental age in eggs of the American Avocet (Recurvirostra americana), Black-necked Stilt (Himantopus mexicanus), and Forster's Tern (Sterna forsteri). Predicted hatch dates based on egg flotation during our first visit to a nest were highly correlated with actual hatch dates (r = 0.99) and accurate within 2.3 ± 1.7 (SD) days. Age estimates based on flotation were correlated with both day of incubation (r = 0.96) and the embryo's developmental age (r = 0.86) and accurate within 1.3 ± 1.6 days and 1.9 ± 1.6 days, respectively. However, the technique's accuracy varied substantially throughout incubation. Flotation overestimated the embryo's developmental age between 3 and 9 days, underestimated age between 12 and 21 days, and was most accurate between 0 and 3 days and 9 and 12 days. Age estimates based on egg flotation were generally accurate within 3 days until day 15 but later in incubation were biased progressively lower. Egg flotation was inaccurate and overestimated embryo age in abandoned nests (mean error: 7.5 ± 6.0 days). The embryo's developmental age and day of incubation were highly correlated (r = 0.94), differed by 2.1 ± 1.6 days, and resulted in similar assessments of the egg-flotation technique. Floating every egg in the clutch and refloating eggs at subsequent visits to a nest can refine age estimates.

  3. Sleep Regulates Incubation of Cocaine Craving.

    PubMed

    Chen, Bo; Wang, Yao; Liu, Xiaodong; Liu, Zheng; Dong, Yan; Huang, Yanhua H

    2015-09-30

    After withdrawal from cocaine, chronic cocaine users often experience persistent reduction in total sleep time, which is accompanied by increased sleep fragmentation resembling chronic insomnia. This and other sleep abnormalities have long been speculated to foster relapse and further drug addiction, but direct evidence is lacking. Here, we report that after prolonged withdrawal from cocaine self-administration, rats exhibited persistent reduction in nonrapid-eye-movement (NREM) and rapid-eye-movement (REM) sleep, as well as increased sleep fragmentation. In an attempt to improve sleep after cocaine withdrawal, we applied chronic sleep restriction to the rats during their active (dark) phase of the day, which selectively decreased the fragmentation of REM sleep during their inactive (light) phase without changing NREM or the total amount of daily sleep. Animals with improved REM sleep exhibited decreased incubation of cocaine craving, a phenomenon depicting the progressive intensification of cocaine seeking after withdrawal. In contrast, experimentally increasing sleep fragmentation after cocaine self-administration expedited the development of incubation of cocaine craving. Incubation of cocaine craving is partially mediated by progressive accumulation of calcium-permeable AMPA receptors (CP-AMPARs) in the nucleus accumbens (NAc). After withdrawal from cocaine, animals with improved REM sleep exhibited reduced accumulation of CP-AMPARs in the NAc, whereas increasing sleep fragmentation accelerated NAc CP-AMPAR accumulation. These results reveal a potential molecular substrate that can be engaged by sleep to regulate cocaine craving and relapse, and demonstrate sleep-based therapeutic opportunities for cocaine addiction. Significance statement: Sleep abnormalities are common symptoms in chronic drug users long after drug withdrawal. These withdrawal-associated sleep symptoms, particularly reduction in total sleep time and deteriorating sleep quality, have been

  4. Sleep Regulates Incubation of Cocaine Craving

    PubMed Central

    Chen, Bo; Wang, Yao; Liu, Xiaodong; Liu, Zheng

    2015-01-01

    After withdrawal from cocaine, chronic cocaine users often experience persistent reduction in total sleep time, which is accompanied by increased sleep fragmentation resembling chronic insomnia. This and other sleep abnormalities have long been speculated to foster relapse and further drug addiction, but direct evidence is lacking. Here, we report that after prolonged withdrawal from cocaine self-administration, rats exhibited persistent reduction in nonrapid-eye-movement (NREM) and rapid-eye-movement (REM) sleep, as well as increased sleep fragmentation. In an attempt to improve sleep after cocaine withdrawal, we applied chronic sleep restriction to the rats during their active (dark) phase of the day, which selectively decreased the fragmentation of REM sleep during their inactive (light) phase without changing NREM or the total amount of daily sleep. Animals with improved REM sleep exhibited decreased incubation of cocaine craving, a phenomenon depicting the progressive intensification of cocaine seeking after withdrawal. In contrast, experimentally increasing sleep fragmentation after cocaine self-administration expedited the development of incubation of cocaine craving. Incubation of cocaine craving is partially mediated by progressive accumulation of calcium-permeable AMPA receptors (CP-AMPARs) in the nucleus accumbens (NAc). After withdrawal from cocaine, animals with improved REM sleep exhibited reduced accumulation of CP-AMPARs in the NAc, whereas increasing sleep fragmentation accelerated NAc CP-AMPAR accumulation. These results reveal a potential molecular substrate that can be engaged by sleep to regulate cocaine craving and relapse, and demonstrate sleep-based therapeutic opportunities for cocaine addiction. SIGNIFICANCE STATEMENT Sleep abnormalities are common symptoms in chronic drug users long after drug withdrawal. These withdrawal-associated sleep symptoms, particularly reduction in total sleep time and deteriorating sleep quality, have been

  5. Coastal sedimentation

    NASA Technical Reports Server (NTRS)

    Schubel, J. R.

    1980-01-01

    Several important coastal sedimentation problems are identified. Application of existing or anticipated remote sensing techniques to examine these problems is considered. Specifically, coastal fine particle sediment systems, floods and hy hurricanes and sedimentation f of coastal systems, routes and rates of sediment transport on continental shelves, and dredging and dredged material disposal are discussed.

  6. Stellar Incubators Seen Cooking up Stars

    NASA Image and Video Library

    2005-01-12

    This image composite compares visible-light and infrared views from NASA's Spitzer Space Telescope of the glowing Trifid Nebula, a giant star-forming cloud of gas and dust located 5,400 light-years away in the constellation Sagittarius. Visible-light images of the Trifid taken with NASA's Hubble Space Telescope, Baltimore, Md. (inside left, figure 1) and the National Optical Astronomy Observatory, Tucson, Ariz., (outside left, figure 1) show a murky cloud lined with dark trails of dust. Data of this same region from the Institute for Radioastronomy millimeter telescope in Spain revealed four dense knots, or cores, of dust (outlined by yellow circles), which are "incubators" for embryonic stars. Astronomers thought these cores were not yet ripe for stars, until Spitzer spotted the warmth of rapidly growing massive embryos tucked inside. http://photojournal.jpl.nasa.gov/catalog/PIA07226

  7. A coastal ocean extreme bloom incubator

    NASA Astrophysics Data System (ADS)

    Ryan, John P.; Gower, James F. R.; King, Stephanie A.; Bissett, W. Paul; Fischer, Andrew M.; Kudela, Raphael M.; Kolber, Zbigniew; Mazzillo, Fernanda; Rienecker, Erich V.; Chavez, Francisco P.

    2008-06-01

    Novel remote sensing methods and in situ observations reveal that intense dinoflagellate blooms occur frequently in Monterey Bay, California. Blooms can contain surface chlorophyll concentrations exceeding 500 μg l-1 and occupy ~5 to 80 km2. They occur primarily during August through November and can persist for > 1 month. Maximum bloom frequency and mean intensity are in a shallow (< 25 m depth) area of the northeastern bay, in coincidence with the warmest surface water, low wind stress, and retentive circulation. These conditions favor dinoflagellates, which can vertically migrate to acquire nutrients in the thermocline and aggregate as "red tide" near the surface. Bloom incubation areas, also indicated in other coastal upwelling systems, may disproportionately influence regional bloom ecology.

  8. Does incubation enhance problem solving? A meta-analytic review.

    PubMed

    Sio, Ut Na; Ormerod, Thomas C

    2009-01-01

    A meta-analytic review of empirical studies that have investigated incubation effects on problem solving is reported. Although some researchers have reported increased solution rates after an incubation period (i.e., a period of time in which a problem is set aside prior to further attempts to solve), others have failed to find effects. The analysis examined the contributions of moderators such as problem type, presence of solution-relevant or misleading cues, and lengths of preparation and incubation periods to incubation effect sizes. The authors identified a positive incubation effect, with divergent thinking tasks benefiting more than linguistic and visual insight tasks from incubation. Longer preparation periods gave a greater incubation effect, whereas filling an incubation period with high cognitive demand tasks gave a smaller incubation effect. Surprisingly, low cognitive demand tasks yielded a stronger incubation effect than did rest during an incubation period when solving linguistic insight problems. The existence of multiple types of incubation effect provides evidence for differential invocation of knowledge-based vs. strategic solution processes across different classes of problem, and it suggests that the conditions under which incubation can be used as a practical technique for enhancing problem solving must be designed with care.

  9. Incubating Integrative Medicine in India through PMO's Atal Incubator Scheme of Niti Aayog

    PubMed Central

    Anand, Akshay; Tyagi, Rahul; Kaur, Paramvir

    2017-01-01

    Background Incubation centers are considered important tools to advance in a field of activity with multidisciplinary approach. The idea of incubation emerged long time back but it is actively pursued by funding agencies as a medium to propel community development. India's fast developing economy had limited tryst with Integrative Medicine until Indian Prime Minister, Narendra Modi, role modelled for Yoga in Chandigarh on the occasion of International Yoga Day. Integrative Medicine is a growing field and widely accepted as a cost-effective problem solving method that simplifies the management of incurable and complex disorders where modern medicine has little to offer. Summary Development of integrative medicine health incubator is the key to development of multidisciplinary program that offers to reduce the cost of healthcare, out of pocket expenses and emphasizes on preventive healthcare as means to achieve a healthy population in a developing country like India. Key Message Incubation center may become practical solution for many health problems in singular platform for healthier society by integrating traditional and modern medicine. PMID:28867893

  10. Incubating Integrative Medicine in India through PMO's Atal Incubator Scheme of Niti Aayog.

    PubMed

    Anand, Akshay; Tyagi, Rahul; Kaur, Paramvir

    2017-07-01

    Incubation centers are considered important tools to advance in a field of activity with multidisciplinary approach. The idea of incubation emerged long time back but it is actively pursued by funding agencies as a medium to propel community development. India's fast developing economy had limited tryst with Integrative Medicine until Indian Prime Minister, Narendra Modi, role modelled for Yoga in Chandigarh on the occasion of International Yoga Day. Integrative Medicine is a growing field and widely accepted as a cost-effective problem solving method that simplifies the management of incurable and complex disorders where modern medicine has little to offer. Development of integrative medicine health incubator is the key to development of multidisciplinary program that offers to reduce the cost of healthcare, out of pocket expenses and emphasizes on preventive healthcare as means to achieve a healthy population in a developing country like India. Incubation center may become practical solution for many health problems in singular platform for healthier society by integrating traditional and modern medicine.

  11. Transparent Plastic Incubator for the Anaerobic Glove Box

    PubMed Central

    Balish, Edward; Brown, James F.; Wilkins, Tracy D.

    1977-01-01

    An incubator designed for use inside an anaerobic glove box is described. The incubator is made of transparent plastic material, has sliding plastic doors, and can be made in various sizes from readily available materials. Images PMID:16345202

  12. National Alliance of Clean Energy Incubator Activities - Final Technical Report

    SciTech Connect

    Chris Downing, P.E.

    2004-12-14

    Summary of activity related to development of the Alliance of Clean Energy Business Incubators and incubation services provided to the clean energy sector by the Advanced Technology Development Center at the Georgia Institute of Technology.

  13. Controlling droplet incubation using close-packed plug flow

    PubMed Central

    Mary, Pascaline; Abate, Adam R.; Agresti, Jeremy J.; Weitz, David A.

    2011-01-01

    Controlling droplet incubation is critical for droplet-based microfluidic applications; however, current techniques are either of limited precision or place strict limits on the incubation times that can be achieved. Here, we present a simple technique to control incubation time by exploiting close-packed plug flow. In contrast to other techniques, this technique is applicable to very short and very long incubation times. PMID:21544238

  14. Input from Key Stakeholders in the National Security Technology Incubator

    SciTech Connect

    2008-01-31

    This report documents the input from key stakeholders of the National Security Technology Incubator (NSTI) in developing a new technology incubator and related programs for southern New Mexico. The technology incubator is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report includes identification of key stakeholders as well as a description and analysis of their input for the development of an incubator.

  15. Effects of oil transferred from incubating gulls to their eggs

    USGS Publications Warehouse

    King, K.A.; LeFever, C.A.

    1979-01-01

    No. 2 fuel oil, or water, was applied to the breast feathers of incubating laughing gulls trapped at their nest site on an island colony in Texas. Gulls were released after treatment and allowed to incubate their eggs for 5 days. Oil was transferred from the feathers of incubating adults to their eggs and resulted in 41% embryo mortality compared with 2% in controls.

  16. 21 CFR 880.5410 - Neonatal transport incubator.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Neonatal transport incubator. 880.5410 Section 880.5410 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED... Devices § 880.5410 Neonatal transport incubator. (a) Identification. A neonatal transport incubator is a...

  17. Stellar 'Incubators' Seen Cooking up Stars

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site] Figure 1

    [figure removed for brevity, see original site] [figure removed for brevity, see original site] Figure 2Figure 3Figure 4Figure 5

    This image composite compares visible-light and infrared views from NASA's Spitzer Space Telescope of the glowing Trifid Nebula, a giant star-forming cloud of gas and dust located 5,400 light-years away in the constellation Sagittarius.

    Visible-light images of the Trifid taken with NASA's Hubble Space Telescope, Baltimore, Md. (inside left, figure 1) and the National Optical Astronomy Observatory, Tucson, Ariz., (outside left, figure 1) show a murky cloud lined with dark trails of dust. Data of this same region from the Institute for Radioastronomy millimeter telescope in Spain revealed four dense knots, or cores, of dust (outlined by yellow circles), which are 'incubators' for embryonic stars. Astronomers thought these cores were not yet ripe for stars, until Spitzer spotted the warmth of rapidly growing massive embryos tucked inside.

    These embryos are indicated with arrows in the false-color Spitzer picture (right, figure 1), taken by the telescope's infrared array camera. The same embryos cannot be seen in the visible-light pictures (left, figure 1). Spitzer found clusters of embryos in two of the cores and only single embryos in the other two. This is one of the first times that multiple embryos have been observed in individual cores at this early stage of stellar development.

  18. Cultural Incubators and Spread of Innovation.

    PubMed

    Crema, Enrico R; Lake, Mark W

    2015-07-01

    Several forms of social learning rely on the direct or indirect evaluation of the fitness of cultural traits. Here we argue, via a simple agent-based model, that payoff uncertainty, that is, the correlation between a trait and the signal used to evaluate its fitness, plays a pivotal role in the spread of beneficial innovation. More specifically, we examine how this correlation affects the evolutionary dynamics of different forms of social learning and how each form can generate divergent historical trajectories depending on the size of the sample pool. In particular, we demonstrate that social learning by copying the best model is particularly susceptible to a sampling effect caused by the interaction of payoff uncertainty, the number of models sampled (the sample pool), and the frequency with which a trait is present in the population. As a result, we identify circumstances in which smaller sample pools can act as "cultural incubators" that promote the spread of innovations, while more widespread sampling of the population actually retards the rate of cultural evolution.

  19. National Alliance for Clean Energy Incubators New Mexico Clean Energy Incubator

    SciTech Connect

    Roberts, Suzanne S.

    2004-12-15

    The National Alliance for Clean Energy Incubators was established by the National Renewable Energy Laboratory (NREL) to develop an emerging network of business incubators for entrepreneurs specializing in clean energy enterprises. The Alliance provides a broad range of business services to entrepreneurs in specific geographic locales across the U.S. and in diverse clean energy technology areas such as fuel cells, alternative fuels, power generation, and renewables, to name a few. Technology Ventures Corporation (TVC) participates in the Alliance from its corporate offices in Albuquerque, NM, and from its sites in Northern and Southern New Mexico, California, and Nevada. TVC reports on the results of its attempts to accelerate the growth and success of clean energy and energy efficiency companies through its array of business support services. During the period from September 2002 through September 2004, TVC describes contributions to the Alliance including the development of 28 clients and facilitating capital raises exceeding $35M.

  20. Marketing Plan for the National Security Technology Incubator

    SciTech Connect

    2008-03-31

    This marketing plan was developed as part of the National Security Preparedness Project by the Arrowhead Center of New Mexico State University. The vision of the National Security Technology Incubator program is to be a successful incubator of technologies and private enterprise that assist the NNSA in meeting new challenges in national safety and security. The plan defines important aspects of developing the incubator, such as defining the target market, marketing goals, and creating strategies to reach the target market while meeting those goals. The three main marketing goals of the incubator are: 1) developing marketing materials for the incubator program; 2) attracting businesses to become incubator participants; and 3) increasing name recognition of the incubator program on a national level.

  1. Sound transmission into incubators in the neonatal intensive care unit.

    PubMed

    Robertson, A; Cooper-Peel, C; Vos, P

    1999-01-01

    To measure the attenuation of sound by modern incubators. LEQ, LMAX, LPEAK, and frequency distribution were measured simultaneously inside and outside two recent model incubators. The attenuation of sound (outside minus inside) was 15 to 18 dBA with the motor off and 4 to 8 dBA with the motor on. There was a significant difference between incubators in their attenuation of sound. Octave band analysis showed attenuation in frequency bands of > 31.5 Hz with the motor off. With the motor on, the sound level inside the incubator was higher than outside at frequency bands of < 250 Hz. Caring for infants inside modern incubators reduces "averaged" sound exposure to levels near those recommended for the neonatal intensive care unit. Lower frequency sounds are louder inside the incubator and arise from the incubator motor.

  2. Contaminated Sediment

    EPA Pesticide Factsheets

    Contaminated sediments are a significant problem in the Great Lakes basin. Persistent high concentrations of contaminants in the bottom sediments of rivers and harbors pose risks to aquatic organisms, wildlife, and humans.

  3. Mobilization of arsenic during one-year incubations of grey aquifer sands from Araihazar, Bangladesh.

    PubMed

    Radloff, Kathleen A; Cheng, Zhongqi; Rahman, Mohammad W; Ahmed, Kazi M; Mailloux, Brian J; Juhl, Andrew R; Schlosser, Peter; Van Geen, Alexander

    2007-05-15

    Elevated As concentrations in shallow groundwater pose a major health threat in Bangladesh and similarly affected countries, yet there is little consensus on the mechanism of As release to groundwater or how it might be influenced by human activities. In this study, the rate of As release was measured directly with incubations lasting 11 months, using sediment and groundwater collected simultaneously in Bangladesh and maintained under anaerobic conditions throughout the study. Groundwater and gray sediment were collected as diluted slurries between 5 and 38 m in depth, a range over which ambient groundwater As concentrations increased from 20 to 100 microg L(-1). Arsenic was released to groundwater in slurries from 5 and 12 m in depth at a relatively constant rate of 21 +/- 4 (2 sigma) and 23 +/- 6 microg As kg(-1) yr(-1), respectively. Amendment with a modest level of acetate increased the rate of As release only at 12 m (82 +/- 18 mirog kg(-1) yr(-1)). Although the groundwater As concentration was initially highest at 38 m depth, no release of As was observed. These results indicate that the spatial distribution of dissolved As in Bangladesh and local rates of release to groundwater are not necessarily linked. Iron release during the incubations did not occur concurrently with As release, providing further confirmation thatthe two processes are not directly coupled. Small periodic additions of oxygen suppressed the release of As from sediments at all three depths, which supports the notion that anoxia is a prerequisite for accumulation of As in Bangladesh groundwater.

  4. Aquatic Sediments.

    ERIC Educational Resources Information Center

    Sanville, W. D.; And Others

    1978-01-01

    Presents a literature review of aquatic sediments and its effect upon water quality, covering publications of 1976-77. This review includes: (1) sediment water interchange; (2) chemical and physical characterization; and (3) heavy water in sediments. A list of 129 references is also presented. (HM)

  5. Aquatic Sediments.

    ERIC Educational Resources Information Center

    Sanville, W. D.; And Others

    1978-01-01

    Presents a literature review of aquatic sediments and its effect upon water quality, covering publications of 1976-77. This review includes: (1) sediment water interchange; (2) chemical and physical characterization; and (3) heavy water in sediments. A list of 129 references is also presented. (HM)

  6. Graphene Oxide Enhances Cellular Delivery of Hydrophilic Small Molecules by Co-incubation

    PubMed Central

    2015-01-01

    The delivery of bioactive molecules into cells has broad applications in biology and medicine. Polymer-modified graphene oxide (GO) has recently emerged as a de facto noncovalent vehicle for hydrophobic drugs. Here, we investigate a different approach using native GO to deliver hydrophilic molecules by co-incubation in culture. GO adsorption and delivery were systematically studied with a library of 15 molecules synthesized with Gd(III) labels to enable quantitation. Amines were revealed to be a key chemical group for adsorption, while delivery was shown to be quantitatively predictable by molecular adsorption, GO sedimentation, and GO size. GO co-incubation was shown to enhance delivery by up to 13-fold and allowed for a 100-fold increase in molecular incubation concentration compared to the alternative of nanoconjugation. When tested in the application of Gd(III) cellular MRI, these advantages led to a nearly 10-fold improvement in sensitivity over the state-of-the-art. GO co-incubation is an effective method of cellular delivery that is easily adoptable by researchers across all fields. PMID:25226566

  7. Graphene oxide enhances cellular delivery of hydrophilic small molecules by co-incubation.

    PubMed

    Hung, Andy H; Holbrook, Robert J; Rotz, Matthew W; Glasscock, Cameron J; Mansukhani, Nikhita D; MacRenaris, Keith W; Manus, Lisa M; Duch, Matthew C; Dam, Kevin T; Hersam, Mark C; Meade, Thomas J

    2014-10-28

    The delivery of bioactive molecules into cells has broad applications in biology and medicine. Polymer-modified graphene oxide (GO) has recently emerged as a de facto noncovalent vehicle for hydrophobic drugs. Here, we investigate a different approach using native GO to deliver hydrophilic molecules by co-incubation in culture. GO adsorption and delivery were systematically studied with a library of 15 molecules synthesized with Gd(III) labels to enable quantitation. Amines were revealed to be a key chemical group for adsorption, while delivery was shown to be quantitatively predictable by molecular adsorption, GO sedimentation, and GO size. GO co-incubation was shown to enhance delivery by up to 13-fold and allowed for a 100-fold increase in molecular incubation concentration compared to the alternative of nanoconjugation. When tested in the application of Gd(III) cellular MRI, these advantages led to a nearly 10-fold improvement in sensitivity over the state-of-the-art. GO co-incubation is an effective method of cellular delivery that is easily adoptable by researchers across all fields.

  8. Survival of lake trout eggs on reputed spawning grounds in Lakes Huron and Superior: In situ incubation, 1987-1988

    USGS Publications Warehouse

    Manny, Bruce A.; Edsall, Thomas A.; Peck, James W.; Kennedy, Gregory W.; Frank, Anthony M.

    1995-01-01

    Lake trout reproduce widely in Lake Superior but little in Lake Huron. We examined whether survival of lake trout eggs and fry in either lake was reduced by physical disturbances and swim-up mortality. Eggs were collected from feral lake trout in Lake Superior and placed in 108 plastic incubators. A total of 48 incubators was set at Partridge Island Reef in southern Lake Superior, 48 were set at Port Austin Reef in southern Lake Huron, and 12 were held as controls inflowing well water at a laboratory. Survival-to-hatching of these eggs at Partridge Island Reef (18%) was significantly different from that at Port Austin Reef (43%) and significantly different in the laboratory (88%) from that at either reef (P < 0.05). During egg-fry incubation from 28 October 1987 to 5 May 1988, 11–18 cm of sediment accumulated in sediment traps placed on the reefs but < 1 cm of sediment was present on each reef in May 1988. Analysis showed that 44% of the eggs at Port Austin Reef and 28% of those at Partridge Island Reef were buried and killed by sediments. During the first week after deployment, mean wave energy was 90% higher at Partridge Island Reef and significantly different from that at Port Austin Reef. Wave energy may be a habitat condition that makes Partridge Island Reef less suitable than Port Austin Reef for incubation of lake trout eggs. Fry from eggs incubated at all three sites experienced no swim-up mortality. We conclude that in 1987–88 habitat conditions required for survival of lake trout eggs were more suitable at Port Austin Reef than at Partridge Island Reef.

  9. Reactive iron in marine sediments

    NASA Technical Reports Server (NTRS)

    Canfield, Donald E.

    1989-01-01

    The influence of reactive iron oxides on sediment pore-water chemistry is considered in detail. A carefully calibrated extraction scheme is used to determine the depth distributions of reactive iron phases at two very different localities: the relatively iron-rich Mississippi Delta and the relatively iron-poor FOAM site in Long Island Sound. Closed system incubations are used to characterize the rates of reaction between sulfide and both naturally occurring and pure iron mineral phases. Rates of iron liberation to pore solution are measured in the presence and absence of sulfate reduction, and the origin of dissolved iron in organic-rich sediments is speculated upon.

  10. Reactive iron in marine sediments

    NASA Technical Reports Server (NTRS)

    Canfield, Donald E.

    1989-01-01

    The influence of reactive iron oxides on sediment pore-water chemistry is considered in detail. A carefully calibrated extraction scheme is used to determine the depth distributions of reactive iron phases at two very different localities: the relatively iron-rich Mississippi Delta and the relatively iron-poor FOAM site in Long Island Sound. Closed system incubations are used to characterize the rates of reaction between sulfide and both naturally occurring and pure iron mineral phases. Rates of iron liberation to pore solution are measured in the presence and absence of sulfate reduction, and the origin of dissolved iron in organic-rich sediments is speculated upon.

  11. Soil Organic Carbon Degradation during Incubation, Barrow, Alaska, 2012

    DOE Data Explorer

    Elizabeth Herndon; Ziming Yang; Baohua Gu

    2017-01-05

    This dataset provides information about soil organic carbon decomposition in Barrow soil incubation studies. The soil cores were collected from low-center polygon (Area A) and were incubated in the laboratory at different temperatures for up to 60 days. Transformations of soil organic carbon were characterized by UV and FT-IR, and small organic acids in water-soluble carbons were quantified by ion chromatography during the incubation (Herndon et al., 2015).

  12. Short Nissl staining for incubated cryostat sections of the brain.

    PubMed

    Lindroos, O F

    1991-01-01

    Nissl stain often binds poorly to cryostat sections which have been incubated in solutions of radiolabeled ligands. Such incubation is used in receptor autoradiography of the brain when using the in vitro method. We have developed a rapid (16 min) modification of Nissl staining for sections that bind stain poorly, e.g., incubated sections. The method stains well sections which cannot be stained with other rapid Nissl staining methods.

  13. Electromagnetic fields in neonatal incubators: the reasons for an alert.

    PubMed

    Bellieni, Carlo Valerio; Nardi, Valentina; Buonocore, Giuseppe; Di Fabio, Sandra; Pinto, Iole; Verrotti, Alberto

    2017-10-08

    Neonatal incubators are important tools for sick newborns in the first few days of life. Nevertheless, their electric engine, often very close to the newborn's body, emits electromagnetic fields (EMF) to which newborns are exposed. Aim of this paper is to review the available literature on EMF exposure in incubators, and the effects of such exposures on newborns that have been investigated. We carried out a systematic review of studies about EMF emissions produced by incubators, using Medline and Embase databases from 1993 to 2017. We retrieved 15 papers that described the EMF exposure in incubators and their biological effects on babies. EMF levels in incubators appear to be between 2 and 100 mG, depending on the distance of the mattress from the electric engine. In some cases they exceed this range. These values interfere with melatonin production or with vagal tone. Even caregivers are exposed to high EMF, above 200 mG, when working at close contact with the incubators. EMF have been described as potentially hazardous for human health, and values reported in this review are an alert to prevent babies' and caregivers' exposure when close to the incubators. A precautionary approach should be adopted in future incubator design, to prevent high exposures of newborns in incubators and of caregivers as well.

  14. 8. GENERAL INTERIOR VIEW OF FISH HATCHERY BUILDING, SHOWING INCUBATION ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    8. GENERAL INTERIOR VIEW OF FISH HATCHERY BUILDING, SHOWING INCUBATION TANKS. - Bonneville Project, Fish Hatchery, On Columbia River bordered on South by Union Pacific, Bonneville, Multnomah County, OR

  15. Incubator Display Software Cost Reduction Toolset Software Requirements Specification

    NASA Technical Reports Server (NTRS)

    Moran, Susanne; Jeffords, Ralph

    2005-01-01

    The Incubator Display Software Requirements Specification was initially developed by Intrinsyx Technologies Corporation (Intrinsyx) under subcontract to Lockheed Martin, Contract Number NAS2-02090, for the National Aeronautics and Space Administration (NASA) Ames Research Center (ARC) Space Station Biological Research Project (SSBRP). The Incubator Display is a User Payload Application (UPA) used to control an Incubator subrack payload for the SSBRP. The Incubator Display functions on-orbit as part of the subrack payload laptop, on the ground as part of the Communication and Data System (CDS) ground control system, and also as part of the crew training environment.

  16. Alkaline Phosphatase Assay for Freshwater Sediments: Application to Perturbed Sediment Systems

    PubMed Central

    Sayler, Gary S.; Puziss, Marla; Silver, Martin

    1979-01-01

    The p-nitrophenyl phosphate hydrolysis-phosphatase assay was modified for use in freshwater sediment. Laboratory studies indicated that the recovery of purified alkaline phosphatase activity was 100% efficient in sterile freshwater sediments when optimized incubation and sonication conditions were used. Field studies of diverse freshwater sediments demonstrated the potential use of this assay for determining stream perturbation. Significant correlations between phosphatase and total viable cell counts, as well as adenosine triphosphate biomass, suggested that alkaline phosphatase activity has utility as an indicator of microbial population density and biomass in freshwater sediments. PMID:16345464

  17. Enhancing Verbal Creativity via Brief Interventions during an Incubation Interval

    ERIC Educational Resources Information Center

    Hao, Ning; Ku, Yixuan; Liu, Meigui; Hu, Yi; Grabner, Roland H.; Fink, Andreas

    2014-01-01

    Previous studies revealed inconsistent findings about the effects of cognitively low or high demanding interpolated tasks during incubation period on post-incubation creative performance. To explain this contradiction, two intervention tasks were administered (Reflecting on the generated ideas [RF] and the Word puzzle task [WP]), which are…

  18. Improved transport incubator temperature control with insulating thermal cover.

    PubMed

    Macnab, A J; Schweers, D; Kendall, M D; Komori, J H; Biddle, M

    1995-01-01

    Cold stress, secondary to heat loss, can compromise infants in transport incubators during interfacility transfer. With current incubator designs, considerable radiant heat loss occurs. The use of additional external thermal insulation to reduce heat loss has been recommended for infant transports in cold environments. A laboratory experiment was done to compare the rate of heat loss from a transport incubator with and without a commercially available, thermal insulating cover in place. The environment was a commercial freezer simulating subzero environmental temperatures. Measurements included air temperatures. inside the incubator and freezer, patterns of heater action and duration of battery power output. The significance of the different rates of cooling was compared using Pearson's r. Suboptimal battery performance was excluded by repeating one arm of the study with an external battery in place of the internal unit. The rate of heat loss from the incubator was: 1) significantly slower when the covered and uncovered incubators were compared (r2 = 0.52), and 2) essentially identical for the uncovered incubator with either the internal or the external battery (r2 = 0.96). In the laboratory setting, external thermal insulation slows transport incubator radiant heat loss. Clinically, this effect likely would benefit infants at risk of cold stress during interfacility transports.

  19. Incubation Provides Relief from Artificial Fixation in Problem Solving

    ERIC Educational Resources Information Center

    Penaloza, Alan A.; Calvillo, Dustin P.

    2012-01-01

    An incubation effect occurs when taking a break from a problem helps solvers arrive at the correct solution more often than working on it continuously. The forgetting-fixation account, a popular explanation of how incubation works, posits that a break from a problem allows the solver to forget the incorrect path to the solution and finally access…

  20. Does Incubation Enhance Problem Solving? A Meta-Analytic Review

    ERIC Educational Resources Information Center

    Sio, Ut Na; Ormerod, Thomas C.

    2009-01-01

    A meta-analytic review of empirical studies that have investigated incubation effects on problem solving is reported. Although some researchers have reported increased solution rates after an incubation period (i.e., a period of time in which a problem is set aside prior to further attempts to solve), others have failed to find effects. The…

  1. Incubation Provides Relief from Artificial Fixation in Problem Solving

    ERIC Educational Resources Information Center

    Penaloza, Alan A.; Calvillo, Dustin P.

    2012-01-01

    An incubation effect occurs when taking a break from a problem helps solvers arrive at the correct solution more often than working on it continuously. The forgetting-fixation account, a popular explanation of how incubation works, posits that a break from a problem allows the solver to forget the incorrect path to the solution and finally access…

  2. Does Incubation Enhance Problem Solving? A Meta-Analytic Review

    ERIC Educational Resources Information Center

    Sio, Ut Na; Ormerod, Thomas C.

    2009-01-01

    A meta-analytic review of empirical studies that have investigated incubation effects on problem solving is reported. Although some researchers have reported increased solution rates after an incubation period (i.e., a period of time in which a problem is set aside prior to further attempts to solve), others have failed to find effects. The…

  3. The incubation period of cholera: a systematic review.

    PubMed

    Azman, Andrew S; Rudolph, Kara E; Cummings, Derek A T; Lessler, Justin

    2013-05-01

    Recent large cholera outbreaks highlight the need for improved understanding of the pathogenesis and epidemiology of cholera. The incubation period of cholera has important implications for clinical and public health decision-making, yet statements of the incubation period of cholera are often imprecise. Here we characterize the distribution of cholera's incubation period. We conducted a systematic review of the literature for statements of the incubation period of cholera and data that might aid in its estimation. We extracted individual-level data, parametrically estimated the distribution of toxigenic cholera's incubation period, and evaluated evidence for differences between strains. The incubation period did not differ by a clinically significant margin between strains (except O1 El Tor Ogawa). We estimate the median incubation period of toxigenic cholera to be 1.4 days (95% CI, 1.3-1.6). Five percent of cholera cases will develop symptoms by 0.5 days (95% CI 0.4-0.5), and 95% by 4.4 days (95% CI 3.9-5.0) after infection. We recommend that cholera investigations use a recall period of at least five days to capture relevant exposures; significantly longer than recent risk factor studies from the Haitian epidemic. This characterization of cholera's incubation period can help improve clinical and public health practice and advance epidemiologic research. Copyright © 2012 The British Infection Association. Published by Elsevier Ltd. All rights reserved.

  4. 7 CFR 58.56 - Incubation of product samples.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Incubation of product samples. 58.56 Section 58.56..., GENERAL SPECIFICATIONS FOR APPROVED PLANTS AND STANDARDS FOR GRADES OF DAIRY PRODUCTS 1 Regulations... Packaging Products with Official Identification § 58.56 Incubation of product samples. (a) Samples of...

  5. 7 CFR 58.56 - Incubation of product samples.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Incubation of product samples. 58.56 Section 58.56..., GENERAL SPECIFICATIONS FOR APPROVED PLANTS AND STANDARDS FOR GRADES OF DAIRY PRODUCTS 1 Regulations... Packaging Products with Official Identification § 58.56 Incubation of product samples. (a) Samples of...

  6. Enhancing Verbal Creativity via Brief Interventions during an Incubation Interval

    ERIC Educational Resources Information Center

    Hao, Ning; Ku, Yixuan; Liu, Meigui; Hu, Yi; Grabner, Roland H.; Fink, Andreas

    2014-01-01

    Previous studies revealed inconsistent findings about the effects of cognitively low or high demanding interpolated tasks during incubation period on post-incubation creative performance. To explain this contradiction, two intervention tasks were administered (Reflecting on the generated ideas [RF] and the Word puzzle task [WP]), which are…

  7. Measles with a possible 23 day incubation period.

    PubMed

    Fitzgerald, Tove L; Durrheim, David N; Merritt, Tony D; Birch, Christopher; Tran, Thomas

    2012-09-30

    Measles virus (MV) eradication is biologically, technically and operationally feasible. An essential feature in understanding the chain of MV transmission is its incubation period, that is, the time from infection to the onset of symptoms. This period is important for determining the likely source of infection and directing public health measures to interrupt ongoing transmission. Long measles incubation periods have rarely been documented in the literature. We report on a previously healthy 11-year-old Australian boy who was confirmed with measles genotype D9 infection following travel in the Philippines. Epidemiological evidence supported an unusually long incubation period of at least 23 days and virological evidence was consistent with this finding. Although public health control measures such as post exposure prophylaxis, isolation and surveillance of susceptible individuals should continue to be based on the more common incubation period, a longer incubation period may occasionally explain an unexpected measles case.

  8. In-Situ Incubation of Iron-Sulfide Mineral in Seawater Reveals Colonization by Iron-Oxidizing Gammaproteobacteria and Zetaproteobacteria.

    NASA Astrophysics Data System (ADS)

    Barco, R. A.; Ramírez, G. A.; Sylvan, J. B.; Edwards, K. J.

    2015-12-01

    Sulfide mineral precipitation occurs at mid-ocean ridge (MOR) spreading centers, both in the form of plume particles and massive sulfide structures. A common constituent of MOR sulfide mineral is pyrrhotite (Fe1-xS). This mineral was chosen as a substrate for in-situ incubation studies in the shallow waters of Catalina Islands, CA to investigate the colonization of iron-oxidizing bacteria. Gammaproteobacteria and Alphaproteobacteria largely dominated the bacterial community on pyrrhotite samples incubated in the water column. Pyrrhotite samples incubated at the sediment/water column interface showed more even dominance by Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria and Bacteroidetes. Cultivations that originated from these pyrrhotite samples resulted in the enrichment of Zetaproteobacteria with either twisted-stalks (Mariprofundus) or sheath structures. Additionally, a candidate novel Gammaproteobacterium was isolated and shown to grow autotrophically via the oxidation of iron.

  9. Aquatic sediments

    SciTech Connect

    Bonner, J.S.; Autenrieth, R.L.; Schreiber, L. )

    1990-06-01

    The authors present a literature review concerning sediment properties, interactions, and conditions. Topics of discussion include the following: biological activity and toxicity; nutrients; metals; organic compounds; dredging; radionuclides; oxygen demand and organic carbon; mathematical modeling; sediment transport and suspension; and paleolimnology.

  10. The Pre-Incubator: A Longitudinal Study of 10 Years of University Pre-Incubation in Wales

    ERIC Educational Resources Information Center

    Voisey, Pamela; Jones, Paul; Thomas, Brychan

    2013-01-01

    This paper describes a longitudinal study of over 10 years of university pre-incubation in Wales, using case studies of incubated businesses to track their performance since 2001. Surviving "graduated" businesses were investigated and quantitative and qualitative data were gathered to profile the current status of these businesses and…

  11. Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments.

    PubMed

    Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

    2016-06-25

    The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments.

  12. Laboratory evidence for short and long-term damage to pink salmon incubating in oiled gravel

    SciTech Connect

    Heintz, R.; Rice, S.; Wiedmer, M.

    1995-12-31

    Pink salmon, incubating in gravel contaminated with crude oil, demonstrated immediate and delayed responses in the laboratory at doses consistent with the concentrations observed in oiled streams in Prince William Sound. The authors incubated pink salmon embryos in a simulated intertidal environment with gravel contaminated by oil from the Exxon Valdez. During the incubation and emergence periods the authors quantified dose-response curves for characters affected directly by the oil. After emergence, fish were coded wire tagged and released, or cultured in netpens. Delayed responses have been observed among the cultured fish, and further observations will be made when coded wire tagged fish return in September 1995. The experiments have demonstrated that eggs need not contact oiled gravel to experience increased mortality, and doses as low as 17 ppb tPAH in water can have delayed effects on growth. A comparison of sediment tPAH concentrations from streams in Prince William Sound with these laboratory data suggests that many 1989 brood pink salmon were exposed to deleterious quantities of oil.

  13. Single stage incubators and Hypercapnia during incubation affect the vascularization of the chorioallantoic membrane in broiler embryos.

    PubMed

    Fernandes, J I M; Bortoluzzi, C; Schmidt, J M; Scapini, L B; Santos, T C; Murakami, A E

    2017-01-01

    Incubation management can have direct effects on neonate health and consequently affect post-hatching development. The effects of incubation in multiple and single stage incubators with different concentrations of CO2 were evaluated in terms of the vessel density in the chorioallantoic membrane, hatching, heart morphology, and body development of the neonate up to the tenth day. A total of 2,520 fertile eggs were used and distributed in a completely randomized design with 4 levels of CO2 in 4 single-stage incubators (4,000; 6,000; 8,000; and 10,000 ppm) and a control treatment based on multiple-stage incubation, totaling 5 treatments. The levels of CO2 were used during the first 10 d of the incubation period, and after this period, all eggs were submitted to the same level of CO2 (4,000 ppm). Eggs that were incubated in multiple-stage incubators presented a lower percentage of vessels in the chorioallantoic membrane, lower yolk absorption by the embryo, wall depth of the right ventricle, and greater humidity losses in the eggs when compared to eggs in the single-stage incubators. The eggs submitted to hypercapnia, between 5,000 and 6,000 ppm of CO2, had a higher percentage of vessels in the chorioallantoic membrane; the embryos originating from these eggs had higher weight, with higher relative weight of the liver. However, the same levels reduced the yolk absorption. Single-stage incubation with moderate levels of hypercapnia is an efficient tool to be adopted by the hatcheries when attempting to improve chick quality. © 2016 Poultry Science Association Inc.

  14. Aligning business strategy of incubator center and tenants

    NASA Astrophysics Data System (ADS)

    Prasetyawan, Yudha; Agustiani, Elly; Jumayla, Sari

    2017-06-01

    Incubator center is developed to help a particular group of small business players to achieve the expected business growth. In this center, business players often called as tenants will get assistances in pertaining with space, professional network, marketing, investment or funding, and training to improve their business capability. There are three types of incubator center, namely universities that help their alumni or business people in their surrounded area, company that supports small business as the corporate social responsibility, and independent organizations that have specialties in the business development. Some might success in increasing the capacity of the tenants, while other can have difficulties to increase the simplest business capability, e.g., to define the production cost to measure the profit. This study was intended to propose a model to align the business strategy between incubator center and its tenants. The sales and profit growth are the main priorities for the tenants together with their business capability and sustainability. The proposed alignment model provides measurement tools that link the motivation of tenants for joining the incubation process with the mission of incubator center. The linkage covered the key performance indicators (KPI), steps to achieve the target and evaluation tools to improve the current handicaps. An experiment on 4 (four) diverse business fields of the tenants of an incubator center was performed to test the model. As a result, the increase of KPI of incubator center will simultaneously yield a higher value of the tenants' sales.

  15. Creativity-the unconscious foundations of the incubation period.

    PubMed

    Ritter, Simone M; Dijksterhuis, Ap

    2014-01-01

    Creativity is one of the most important assets we have to navigate through the fast changing world of the 21st century. Anecdotal accounts of creative individuals suggest that oftentimes, creative discoveries result from a process whereby initial conscious thought is followed by a period during which one refrains from task-related conscious thought. For example, one may spend an embarrassing amount of time thinking about a problem when the solution suddenly pops into consciousness while taking a shower. Not only creative individuals but also traditional theories of creativity have put a lot of emphasis on this incubation stage in creative thinking. The aim of the present article is twofold. First, an overview of the domain of incubation and creativity is provided by reviewing and discussing studies on incubation, mind-wandering, and sleep. Second, the causes of incubation effects are discussed. Previously, little attention has been paid to the causes of incubation effects and most findings do not really speak to whether the effects should be explained by unconscious processes or merely by consequences of a period of distraction. In the latter case, there is no need to assume active unconscious processes. The findings discussed in the current article support the idea that it is not merely the absence of conscious thought that drives incubation effects, but that during an incubation period unconscious processes contribute to creative thinking. Finally, practical implications and directions for future research will be discussed.

  16. Creativity—the unconscious foundations of the incubation period

    PubMed Central

    Ritter, Simone M.; Dijksterhuis, Ap

    2014-01-01

    Creativity is one of the most important assets we have to navigate through the fast changing world of the 21st century. Anecdotal accounts of creative individuals suggest that oftentimes, creative discoveries result from a process whereby initial conscious thought is followed by a period during which one refrains from task-related conscious thought. For example, one may spend an embarrassing amount of time thinking about a problem when the solution suddenly pops into consciousness while taking a shower. Not only creative individuals but also traditional theories of creativity have put a lot of emphasis on this incubation stage in creative thinking. The aim of the present article is twofold. First, an overview of the domain of incubation and creativity is provided by reviewing and discussing studies on incubation, mind-wandering, and sleep. Second, the causes of incubation effects are discussed. Previously, little attention has been paid to the causes of incubation effects and most findings do not really speak to whether the effects should be explained by unconscious processes or merely by consequences of a period of distraction. In the latter case, there is no need to assume active unconscious processes. The findings discussed in the current article support the idea that it is not merely the absence of conscious thought that drives incubation effects, but that during an incubation period unconscious processes contribute to creative thinking. Finally, practical implications and directions for future research will be discussed. PMID:24782742

  17. Liquid incubator with perfluorochemicals for extremely premature infants.

    PubMed

    Hiroma, Takehiko; Baba, Atsushi; Tamura, Masanori; Nakamura, Tomohiko

    2006-01-01

    Maintenance of appropriate body temperature, humidification and prevention of skin injury are very important in the management of extremely premature infants with immature skin. We have developed a new closed liquid incubator, utilising the characteristics of perfluorochemical (PFC) liquids, i.e., high specific gravity and chemical and biological inertness. The potential of this incubator to control body temperature was evaluated in rats. PFC liquid (FC43; 3M Company, Tokyo, Japan) within the incubator was heated or cooled and the rectal temperature of each rat and the PFC temperature were monitored. The rectal temperature of rats floating on the PFC liquid surface changed almost in parallel to the temperature of PFC within the incubator, indicating that this technique can be used to warm or cool adults rats in a stable manner. The relative humidity of air within the incubator was maintained constant at 100%. The liquid incubator used in the present study maintained an environment with a relative humidity of 100% and allowed stable maintenance of temperature in adult rats. We also demonstrated that heating and cooling the PFC liquid allowed control of body temperature. Although further studies are required, this new incubator may be useful for the clinical management of extremely premature infants. Copyright 2006 S. Karger AG, Basel.

  18. Toward a fuzzy logic control of the infant incubator.

    PubMed

    Reddy, Narender P; Mathur, Garima; Hariharan, S I

    2009-10-01

    Premature birth is a world wide problem. Thermo regulation is a major problem in premature infants. Premature infants are often kept in infant incubators providing convective heating. Currently either the incubator air temperature is sensed and used to control the heat flow, or infant's skin temperature is sensed and used in the close loop control. Skin control often leads to large fluctuations in the incubator air temperature. Air control also leads to skin temperature fluctuations. The question remains if both the infant's skin temperature and the incubator air temperature can be simultaneously used in the control. The purpose of the present study was to address this question by developing a fuzzy logic control which incorporates both incubator air temperature and infant's skin temperature to control the heating. The control was evaluated using a lumped parameter mathematical model of infant-incubator system (Simon, B. N., N. P. Reddy, and A. Kantak, J. Biomech. Eng. 116:263-266, 1994). Simulation results confirmed previous experimental results that the on-off skin control could lead to fluctuations in the incubator air temperature, and the air control could lead to too slow rise time in the core temperature. The fuzzy logic provides a smooth control with the desired rise time.

  19. A portable freshwater closed-system fish egg incubation system

    USGS Publications Warehouse

    Sutherland, Jenny L.; Manny, Bruce A.; Kennedy, Gregory W.; Roseman, Edward F.; Allen, Jeffrey D.; Black, M. Glen

    2014-01-01

    To identify fish eggs collected in the field to species, a portable closed-system fish egg incubation system was designed and used to incubate and hatch the eggs in the laboratory. The system is portable, small in scale (2.54 × 1.52 × 2.03 m), and affordable, with the approximate cost of the system being US$8,300 (2012). The main tank is 678 L and holds a battery of up to 21 (egg) incubation jars. The system includes three independent water pumping systems to (1) provide aerated water to hatching jars, (2) filter and sterilize incubation water, and (3) provide temperature-controlled water in the main tank bath and the incubation jars. The system was successfully used to incubate freshwater fish eggs to raise resulting larvae to the post-yolk-sac stage for three seasons (spring 2012, spring 2013, and fall 2013) over two consecutive years, at two different locations, enabling us to identify fish eggs to species by providing identifiable fish larvae from incubated fish eggs.

  20. Using candlers to determine the incubation stage of passerine eggs

    USGS Publications Warehouse

    Lokemoen, John T.; Koford, Rolf R.

    1996-01-01

    Determining the incubation stage of bird eggs can provide important information to investigators conducting nesting studies. We describe the use of candlers in the field to determine the incubation stage in eggs of Lark Buntings (Calamospiza melanocorys) and other small birds with an incubation period of 11-13 d. Candling was accomplished easily using simple tools and did not involve the destruction of eggs or lengthy disturbance of nests. Candling is often preferable to other methods that rely on egg mass, mass-growth curves, or immersion of eggs in water.

  1. Eggshell breakage by incubating black ducks fed DDE

    USGS Publications Warehouse

    Longcore, J.R.; Samson, F.B.

    1973-01-01

    Black duck (Anas rubripes) hens fed 10 ppm dry weight (approximately 3 ppm wet weight) of p,p'-DDE in the diet laid eggs with shells 22 percent thinner at the equator, 30 percent thinner at the cap, and 33 percent thinner at the apex than those of controls. Natural incubation increased shell cracking more than fourfold as compared with mechanical incubation. Hens removed cracked eggs from nests, and one hen terminated incubation. Hens fed DDE produced one-fifth as many ducklings as controls. DDE in eggs of dosed hens averaged 64.9 ppm wet weight.

  2. Benthic incubation chambers for estimating nitrogen flux at the sediment water interface

    EPA Science Inventory

    USEPA’s Sustainable and Healthy Communities (SHC) research program seeks to better understand how ecosystem functions produce ecosystem goods and services (EGS) in order to develop quantitative tools for informing decisions that lead to more sustainable results. Our incompl...

  3. Benthic incubation chambers for estimating nitrogen flux at the sediment water interface

    EPA Science Inventory

    USEPA’s Sustainable and Healthy Communities (SHC) research program seeks to better understand how ecosystem functions produce ecosystem goods and services (EGS) in order to develop quantitative tools for informing decisions that lead to more sustainable results. Our incompl...

  4. Degradation of methyl bromide in anaerobic sediments

    USGS Publications Warehouse

    Oremland, R.S.; Miller, L.G.; Strohmaler, F.E.

    1994-01-01

    Methyl bromide (MeBr) was anaerobically degraded in saltmarsh sediments after reaction with sulfide. The product of this nucleophilic substitution reaction was methanethiol, which underwent further chemical and bacterial reactions to form dimethyl sulfide. These two gases appeared transiently during sediment incubations because they were metabolized by methanogenic and sulfate-reducing bacteria. A second, less significant reaction of MeBr was the exchange with chloride, forming methyl chloride, which was also susceptible to attack by sulfide. Incubation of 14C-labeled methyl iodide as an analogue of MeBr resulted in the formation of 14CH4 and 14CO2 and also indicated that sulfate-reducing bacteria as well as methanogens metabolized the methylated sulfur intermediates. These results suggest that exposed sediments with abundant free sulfide, such as coastal salt-marshes, may constitute a sink for atmospheric MeBr.

  5. Incubation period of ebola hemorrhagic virus subtype zaire.

    PubMed

    Eichner, Martin; Dowell, Scott F; Firese, Nina

    2011-06-01

    Ebola hemorrhagic fever has killed over 1300 people, mostly in equatorial Africa. There is still uncertainty about the natural reservoir of the virus and about some of the factors involved in disease transmission. Until now, a maximum incubation period of 21 days has been assumed. We analyzed data collected during the Ebola outbreak (subtype Zaire) in Kikwit, Democratic Republic of the Congo, in 1995 using maximum likelihood inference and assuming a log-normally distributed incubation period. The mean incubation period was estimated to be 12.7 days (standard deviation 4.31 days), indicating that about 4.1% of patients may have incubation periods longer than 21 days. If the risk of new cases is to be reduced to 1% then 25 days should be used when investigating the source of an outbreak, when determining the duration of surveillance for contacts, and when declaring the end of an outbreak.

  6. Learning Incubator: an instrument to foster entrepreneurship in Nursing.

    PubMed

    Backes, Dirce Stein; Obem, Marielle Kulakowski; Pereira, Simone Barbosa; Gomes, Carine Alves; Backes, Marli Terezinha Stein; Erdmann, Alacoque Lorenzini

    2015-01-01

    this study aimed to know the contributions of the Learning Incubator to the process of lifelong education in health. this is a qualitative field research whose data was collected from August to December 2014 by the focus group technique. The research had 34 employees of a Teaching Hospital in the central region of the state of Rio Grande do Sul that participated previously in the incubation process. from the data encoded by content analysis, three themes were selected: Learning Incubator - welcoming and integrating space; An instigating instrument that enhances possibilities; Continuous and lifelong education strategy. the Learning Incubator is an important instrument to foster entrepreneurship in nursing and other health areas due to its capacity of rethinking mechanized practices, to the possibility of instigating new ways of being and acting, and to the ability of creating and developing new ideas based on individual and institutional needs.

  7. Stochastic Modeling Approach to the Incubation Time of Prionic Diseases

    NASA Astrophysics Data System (ADS)

    Ferreira, A. S.; da Silva, M. A.; Cressoni, J. C.

    2003-05-01

    Transmissible spongiform encephalopathies are neurodegenerative diseases for which prions are the attributed pathogenic agents. A widely accepted theory assumes that prion replication is due to a direct interaction between the pathologic (PrPSc) form and the host-encoded (PrPC) conformation, in a kind of autocatalytic process. Here we show that the overall features of the incubation time of prion diseases are readily obtained if the prion reaction is described by a simple mean-field model. An analytical expression for the incubation time distribution then follows by associating the rate constant to a stochastic variable log normally distributed. The incubation time distribution is then also shown to be log normal and fits the observed BSE (bovine spongiform encephalopathy) data very well. Computer simulation results also yield the correct BSE incubation time distribution at low PrPC densities.

  8. NASA Spacecraft Images One of Earth Iceberg Incubators

    NASA Image and Video Library

    2012-04-13

    Acquired by NASA Terra spacecraft, this image shows the west coast of Greenland, one of Earth premiere incubators for icebergs -- large blocks of land ice that break off from glaciers or ice shelves and float in the ocean.

  9. Corticosterone secretion through long incubation shifts in Diomedea albatrosses.

    PubMed

    Hector, J A; Harvey, S

    1986-06-01

    Blood samples were collected from free-living incubating Diomedea albatross during single incubation shifts, both daily (wandering albatross D. exulans and every 2 days (grey-headed albatross D. chrysostoma and black-browed albatross D. melanophris), and the concentration of corticosterone was determined. Within 48 hr a significant increase in the corticosterone concentration was observed in each species. The magnitude of the increase was greater in the grey-headed and black-browed albatrosses than in the wandering albatross. Corticosterone concentrations rose steadily through the incubation shift in grey-headed and black-browed albatrosses, but fluctuated erratically in wandering albatrosses. All three species of albatross fast during incubation and the increase in adrenocortical activity is probably related to the voluntary deprivation of food and water.

  10. Mercury Methylation Rates in Prairie Wetland Sediments

    NASA Astrophysics Data System (ADS)

    Hoggarth, C.; Hall, B.

    2011-12-01

    The majority of methylmercury (MeHg) in aquatic ecosystems is likely produced through methylation of Hg(II) by sulfate-reducing and iron-reducing bacteria. Wetland sediments may be significant sites of MeHg production, due to the combination of anoxic conditions and availability of organic matter to support microbial activity. Methylmercury produced by methylation of inorganic mercury within wetland sediments may be transferred to the water column, allowing for bioaccumulation of neurotoxic MeHg in the aquatic food web. Little information is available on sediment MeHg and total mercury concentrations, mercury methylation rates, and MeHg flux to the water column in prairie wetlands. Sediment cores from the St. Denis National Wildlife Area (SDNWA), ~40 km east of Saskatoon in central Saskatchewan, Canada, will be collected to measure sediment mercury methylation rates, total mercury, and MeHg concentrations in prairie wetland sediments. The SDNWA has been a site of prairie wetland research since 1968 and is located near the northern boundary of the Prairie Pothole Region which supports 50-80% of North American waterfowl. Sediment MeHg production will be measured in 2011 through the injection of 201Hg stable isotope to sediment cores from 12 prairie wetlands located within and nearby the SDNWA. Amended sediment cores will be incubated in situ for four hours to allow methylation of a fraction of the inorganic mercury stable isotope to Me201Hg. Analysis of the incubated sediment cores will allow for measurement of MeHg production rates, MeHg, and total mercury concentrations. Additional sediment cores will be taken to determine sediment water content, organic content, and porosity. Water samples from sediment pore water and the wetland water column will be analyzed for MeHg, total mercury, DOC, sulphate, SUVA, and water chemistry. Methylmercury flux from sediment pore water to the overlying water column will be calculated. Sediment MeHg production rates in the 12

  11. Excimer laser corneal ablation: absence of a significant "incubation" effect.

    PubMed

    Pettit, G H; Ediger, M N; Weiblinger, R P

    1991-01-01

    Pulse-to-pulse consistency of excimer laser etching of cornea has been examined via two noncontact techniques: photoacoustic probe beam deflection, and time-resolved excimer pulse reflectometry. These methods clearly document the incubation phenomenon accompanying excimer laser ablation of polymethyl-methacrylate and the absence of the effect during polyimide ablation. In comparison, results for corneal ablation indicate consistent tissue etching over a train of pulses. Consequently, incubation appears to have negligible impact on corneal ablation.

  12. Low-temperature incubation using a water supply

    USGS Publications Warehouse

    Wolf, K.; Quimby, M.C.

    1967-01-01

    Cell and tissue culture has been concerned primarily with homiothermic vertebrate cells which require incubation at about 37 C, and there is a great variety of incubators designed to maintain temperatures which are usually above ambient. The culture of poikilothermic vertebrate cells--and invertebrate, plant, and some microbial cells--can often be carried out at ambient temperatures, but for some work cooler conditions must be provided. Variety among the so-called low-temperature incubators is somewhat restricted; there are no small units, and all require a power source to maintain temperatures below ambient. We have used a gravity-fed water supply for 5 years to provide trouble-free, constant, low-temperature incubation of stock cultures of fish and amphibian cells. Though it is but a small part of our low-temperature incubator capacity, it has no power requirements and it provides maximal protection against temperature rises which could be lethal to some of the cell lines. Though the system has limitations, there is a considerable likelihood that the domestic water supply in other laboratories can also be used to provide low-temperature incubation.

  13. MRI-compatible incubation chamber for cell culture experiments.

    PubMed

    Schwenzer, Nina F; Grönewäller, Eckart F; Rodegerdts, Enno; Kehlbach, Rainer; Duda, Stephan H; Claussen, Claus D

    2006-01-01

    To develop an incubation chamber that is compatible with MRI, while avoiding sources of error due to the experimental setup. Two identical and gas-tight chambers were constructed of Plexiglas. The temperature and the CO(2) concentration were adjustable. Temperature variations within and between both chambers were measured. The pH values of the cell culture media were measured under different environmental settings. For each environment a colony formation test was carried out. The homogeneity of the magnetic field inside the chambers was estimated by phantom tests. The temperature variations within the chambers were <0.3 degrees C, and the variation between the chambers was on average <0.05 degrees C. After eight hours the pH values of the cell culture media were 7.47 and 7.48 in the reference and measurement chambers, respectively; 7.41 in the CO(2) incubator; and 8.73 in ambient air. In colony formation tests the survival fraction in the Plexiglas chamber was comparable to that in the CO(2) incubator. No distortions of the magnetic field from the incubation chamber were observed. The incubation system presented can provide the conditions of a CO(2) incubator without alteration of the magnetic flux density.

  14. Childhood leukemia and magnetic fields in infant incubators.

    PubMed

    Söderberg, Karin C; Naumburg, Estelle; Anger, Gert; Cnattingius, Sven; Ekbom, Anders; Feychting, Maria

    2002-01-01

    In studies of magnetic field exposure and childhood leukemia, power lines and other electrical installations close to the children's homes constitute the most extensively studied source of exposure. We conducted a study to assess whether exposure to magnetic fields in infant incubators is associated with an increased leukemia risk. We identified all children with leukemia born in Sweden between 1973 and 1989 from the national Cancer Registry and selected at random one control per case, individually matched by sex and time of birth, from the study base. We retrieved information about treatment in infant incubators from medical records. We made measurements of the magnetic fields inside the incubators for each incubator model kept by the hospitals. Exposure assessment was based on measurements of the magnetic field level inside the incubator, as well as on the length of treatment. For acute lymphoblastic leukemia, the risk estimates were close to unity for all exposure definitions. For acute myeloid leukemia, we found a slightly elevated risk, but with wide confidence intervals and with no indication of dose response. Overall, our results give little evidence that exposure to magnetic fields inside infant incubators is associated with an increased risk of childhood leukemia.

  15. Using Fyrite to monitor incubator carbon dioxide levels.

    PubMed

    Johnson, J E; Boone, W R; Lee, S T; Blackhurst, D W

    1995-02-01

    The Fyrite analyzer (Bacharach, Incorporated) was evaluated to ascertain whether it would perform within the range specified by the manufacturer (+/- 0.5%). Fyrite analyzer samples were compared to control samples obtained using an infrared CO2 monitor (Ohmeda, Model Number 5200). Ten Fyrite analyzer measurements from each of three incubators were obtained using two different analyzers by three investigators for a total of 60 measurements per investigator. Twenty control measurements for each of the three incubators were obtained using an infrared monitor calibrated at the 5.0% CO2 level. Fyrite analyzer values fell outside of an acceptable range (Control mean CO2 +/- 0.5%) for 7 of 60 (11.7%) observations for Incubator 1 and 4 of 60 (6.7%) observations for Incubator 2. (Incubator 3 had no values outside the range.) The Fyrite analyzers were significantly different from each other (P = 0.002). The three investigators (I) differed significantly from the control (I1 and I3, P < 0.001; I2, P = 0.02) as well as from each other (I1 vs I2, P < 0.001; I1 vs I3, P < 0.001; I2 vs I3, P < 0.016). Use of an infrared monitor for incubator calibration and monthly CO2 checks in concert with daily use of the Fyrite as a monitoring tool only is the better method.

  16. Cable Bacteria in Freshwater Sediments.

    PubMed

    Risgaard-Petersen, Nils; Kristiansen, Michael; Frederiksen, Rasmus B; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

    2015-09-01

    In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures and electric fields indicated electron transfer between vertically separated anodic and cathodic half-reactions. Fluorescence in situ hybridization revealed the presence of Desulfobulbaceae filaments. In addition, in situ measurements of oxygen, pH, and electric potential distributions in the waterlogged banks of Giber Å demonstrated the presence of distant electric redox coupling in naturally occurring freshwater sediment. At the same site, filamentous Desulfobulbaceae with cable bacterium morphology were found to be present. Their 16S rRNA gene sequence placed them as a distinct sister group to the known marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary origin of the cable phenotype within Desulfobulbaceae with subsequent diversification into a freshwater and a marine lineage. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  17. Cable Bacteria in Freshwater Sediments

    PubMed Central

    Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

    2015-01-01

    In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures and electric fields indicated electron transfer between vertically separated anodic and cathodic half-reactions. Fluorescence in situ hybridization revealed the presence of Desulfobulbaceae filaments. In addition, in situ measurements of oxygen, pH, and electric potential distributions in the waterlogged banks of Giber Å demonstrated the presence of distant electric redox coupling in naturally occurring freshwater sediment. At the same site, filamentous Desulfobulbaceae with cable bacterium morphology were found to be present. Their 16S rRNA gene sequence placed them as a distinct sister group to the known marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary origin of the cable phenotype within Desulfobulbaceae with subsequent diversification into a freshwater and a marine lineage. PMID:26116678

  18. Effects of incubation temperature on the bone development of broilers.

    PubMed

    Shim, M Y; Pesti, G M

    2011-09-01

    Manipulating the development of the leg bone by making simple changes to incubation temperature could help reduce the incidence of abnormalities. This study tested the hypothesis that increasing or decreasing the temperature of chick incubation by 1°C for 3 d during ED 4 to 7 affects hatchability, growth, and leg abnormalities of Cobb 500 broilers fed 3 diets: a diet that induced tibial dyschondroplasia, a Ca-deficient diet that induced rickets, and a P-deficient diet that induced rickets. In experiment 1, eggs hatched earlier, and more eggs hatched, at 38.5°C (92.77%) compared with at 37.5°C (86.22%). Body weight was lower in chicks incubated at the higher temperature compared with those incubated at the lower temperature (44.66 vs. 42.92 g). In experiment 2, egg setting times were +17 h for 36.5°C eggs and -10 h for 38.5°C compared with standard setting at 37.5°C (508 h). Hatchability of fertile eggs (92.92%) was highest at 37.5°C and decreased at 36.5°C (89.82%) and 38.5°C (81.55%). Body weight was lower (48.98 g) at 36.5°C than at 37.5°C (49.57 g) and at 38.5°C (50.56 g). Experiment 3 separated effects of incubation temperature and incubation time and was conducted with control and Ca-deficient diets. No main effects or interactions between incubation temperature or time and bone abnormalities were detected. It is important to note that eggs hatched at different times in this study. A difference as little as 1°C for 3 d during ED 4 to 7 affected hatching time and weight.

  19. Assessment of sediment toxicity during anaerobic biodegradation of vegetable oil using Microtox and Hyalella azteca bioassays.

    PubMed

    Li, Zhengkai; Lee, Kenneth; Cobanli, Susan E; King, Thomas; Wrenn, Brian A; Doe, Kenneth G; Jackman, Paula M; Venosa, Albert D

    2007-02-01

    The potential ecological impacts of anaerobic degradation of vegetable oil on freshwater sediments were investigated. Sediment toxicity was evaluated using two regulatory biotests: the Microtox Solid Phase Test and an amphipod (Hyalella azteca) bioassay. The results of the Microtox test showed that the toxicity of the vegetable-oil-contaminated sediments (about 17-33 g oil/kg dry sediments) increased after 2 weeks incubation and then decreased to near background levels after incubation for 8 weeks under anaerobic conditions. The amphipod toxicity bioassay showed that the toxicity of fresh contaminated sediments decreased over time and returned to background levels within 8 weeks. These results suggest that the impact of vegetable oils on organisms within sediments may be limited. To account for the significance of environmental conditions, additional studies over a wide range of incubation conditions (e.g., temperature, nutrient concentration) and other test organisms at various trophic levels are recommended for both acute and chronic toxicity assessment.

  20. Thermoregulation: incubators, radiant warmers, artificial skins, and body hoods.

    PubMed

    LeBlanc, M H

    1991-09-01

    Keeping babies warm whether using incubator or radiant warmers is important in optimizing their chances of survival. Many design changes have occurred in devices for keeping babies warm, while few controlled studies using clinically important end points have been conducted to assess these changes. Radiant warmers produce larger evaporative heat and water losses and slightly higher basal metabolic rate than incubators. The clinical significance of the higher metabolic rate is uncertain. The water losses create an additional problem in managing infants under radiant warmers. The use of hoods made of thin plastic films to raise local humidity and reduce evaporative water loss helps control this problem. In incubators, humidity may be necessary to provide a warm enough environment for the most immature infants. Artificial skins as yet have not supplanted body hoods for this purpose. Both incubators and radiant warmers produce temperature instability when used as skin servocontrolled devices. There are, however, no data currently available to say how much thermal instability can be well tolerated by a baby. Too much thermal instability produces apnea and increased mortality. Air servocontrolling an incubator reduces environmental temperature instability.

  1. Shadoo (Sprn) and prion disease incubation time in mice.

    PubMed

    Lloyd, Sarah E; Grizenkova, Julia; Pota, Hirva; Collinge, John

    2009-06-01

    Prion diseases are transmissible neurodegenerative disorders of mammalian species and include scrapie, bovine spongiform encephalopathy (BSE), and variant Creutzfeldt-Jakob disease (vCJD). The prion protein (PrP) plays a key role in the disease, with coding polymorphism in both human and mouse influencing disease susceptibility and incubation time, respectively. Other genes are also thought to be important and a plausible candidate is Sprn, which encodes the PrP-like protein Shadoo (Sho). Sho is expressed in the adult central nervous system and exhibits neuroprotective activity reminiscent of PrP in an in vitro assay. To investigate the role of Sprn in prion disease incubation time we sequenced the open reading frame (ORF) in a diverse panel of mice and saw little variation except in strains derived from wild-trapped mice. Sequencing the untranslated regions revealed polymorphisms that allowed us to carry out an association study of incubation period in the Northport heterogeneous stock of mice inoculated with Chandler/RML prions. We also examined the expression level of Sprn mRNA in the brains of normal and prion-infected mice and saw no correlation with either genotype or incubation time. We therefore conclude that Sprn does not play a major role in prion disease incubation time in these strains of mice.

  2. Ammonium sorption to channel and riparian sediments: A transient storage pool for dissolved inorganic nitrogen

    USGS Publications Warehouse

    Triska, Frank J.; Jackman, Alan P.; Duff, John H.; Avanzino, Ronald J.

    1994-01-01

    Sediment (0.5 mm–2.0 mm grain size) was incubated in nylon bags (200 μm mesh) below the water table in the channel and in two transects of shallow wells perpendicular to the banks (to 18 m) of a third-order stream during August, 1987. One transect of wells drained steep old-growth forest, and the other a steep 23 year-old clear-cut partially regenerated in alder. At approximately 6-week intervals between October, 1987, and June, 1988, bags were retrieved. Total exchangeable ammonium was determined on sediment, and dissolved oxygen, nitrate and ammonium were determined in stream and well water. Exchangeable ammonium ranged from 10 μeq/100 g of sediment in the stream where nitrification potential and subsurface exchange with stream water were high, to 115 μeq/100 g sediment 18 m inland where channel water-groundwater mixing and nitrification potential were both low. Sorbed ammonium was highest during summer/autumn base flow and lowest during winter storm flow. Both channel and well water contained measurable dissolved oxygen at all times. Ammonium concentration was typically < 10 μg-N/L in channel water, increased with distance inland, but did not exceed 365 μg-N/L at any site. Nitrate concentration was typically higher in well water than channel water. Nitrate levels increased dramatically in wells at the base of the clear-cut following the onset of autumn rains. The results indicate a potential for temporary storage of ammonium on riparian sediments which may influence biotic nitrogen cycling, and alter the timing and form of dissolved inorganic nitrogen transport from the watershed.

  3. An Investigative Study into Perspectives and Experiences of Incubates at the Chandaria Business Innovation and Incubation Centre at the Kenyatta University

    ERIC Educational Resources Information Center

    Munyanyiwa, Takaruza; Mutsau, Morgen; Rudhumbu, Norman; Svotwa, Douglas

    2016-01-01

    The study presents results from an investigative study undertaken at the Kenyatta University (KU) Chandaria Business Innovation and Incubation Centre. A total of 10 incubates representing 10 projects were engaged in face to face interviews. The incubates were appreciative of the value that incubation centre such as the one at KU contributed to…

  4. High incubation temperatures enhance mitochondrial energy metabolism in reptile embryos

    PubMed Central

    Sun, Bao-Jun; Li, Teng; Gao, Jing; Ma, Liang; Du, Wei-Guo

    2015-01-01

    Developmental rate increases exponentially with increasing temperature in ectothermic animals, but the biochemical basis underlying this thermal dependence is largely unexplored. We measured mitochondrial respiration and metabolic enzyme activities of turtle embryos (Pelodiscus sinensis) incubated at different temperatures to identify the metabolic basis of the rapid development occurring at high temperatures in reptile embryos. Developmental rate increased with increasing incubation temperatures in the embryos of P. sinensis. Correspondingly, in addition to the thermal dependence of mitochondrial respiration and metabolic enzyme activities, high-temperature incubation further enhanced mitochondrial respiration and COX activities in the embryos. This suggests that embryos may adjust mitochondrial respiration and metabolic enzyme activities in response to developmental temperature to achieve high developmental rates at high temperatures. Our study highlights the importance of biochemical investigations in understanding the proximate mechanisms by which temperature affects embryonic development. PMID:25749301

  5. Incubation times of dinosaur eggs via embryonic metabolism

    NASA Astrophysics Data System (ADS)

    Lee, Scott A.

    2016-08-01

    The incubation times for the eggs of 21 dinosaurs are determined from an estimate of their embyronic metabolic rate and the mass of the hatchlings via a mass growth model based on conservation of energy. Embryos in extant birds and crocodiles are studied in order to determine the best model for embryonic metabolism and growth. These results are used to develop a theoretical model that predicts the incubation times of an egg. This model is applied to dinosaur eggs and provides a unique window into dinosaur reproduction. The dinosaurs studied come from both Saurischia and Ornithischia. The incubation times vary from about 28 days for Archaeopteryx lithographica to about 76 days for Alamosaurus sanjuanensis.

  6. Uranium geochemistry in estuarine sediments: Controls on removal and release processes

    SciTech Connect

    Barnes, C.E.; Cochran, J.K. )

    1993-02-01

    Porewater uranium profiles from Long Island Sound (LIS) and Amazon shelf sediments and LIS sediment incubation experiments indicate that both removal and release processes control U geochemistry in estuarine sediments. Release of U from sediments occurs in association with Fe reduction. A correlation between U and Fe (and Mn) observed in sediment incubation experiments suggests that there is release of U from Fe-Mn-oxides as they are reduced, consistent with data from the Amazon shelf. In both sediment porewater profiles (LIS and Amazon) and sediment incubation experiments (LIS), there is removal of U from porewater under conditions of sulfate reduction. Sediment incubation experiments indicate that the removal rate is first-order with respect to U concentration, and the rate constant is linearly correlated to sulfate reduction rates. The link between U removal and sulfate reduction (a measure of diagenetic microbial activity) is consistent with a microbial mediation of U reduction. The diffusion flux of U into LIS sediments is estimated from porewater profiles. The inclusion of this estuarine removal term in the oceanic U balance increases the importance of the sediment sink. 62 refs., 12 figs., 2 tabs.

  7. Prolonged incubation of processed human spermatozoa will increase DNA fragmentation.

    PubMed

    Nabi, A; Khalili, M A; Halvaei, I; Roodbari, F

    2014-05-01

    One of the causes of failure in ART is sperm DNA fragmentation which may be associated with long period of spermatozoa incubation at 37 °C. The objective was to evaluate the rate of sperm DNA fragmentation using the sperm chromatin dispersion (SCD) test after swim-up at different time intervals prior to use. In this prospective study, 21 normozoospermic specimens were analysed. The samples were incubated at 37 °C after preparation by direct swim-up. DNA fragmentation was assessed at different time intervals (0, 1, 2 and 3 h) using SCD test. Spermatozoa with no DNA fragmentation showed large- or medium-sized halos, and sperm cells with DNA fragmentation showed either a small halo or no halo. The rates of normal morphology and progressive motility after sperm processing were 72.33 ± 2.53% and 90 ± 1.02%, respectively. The rate of sperm DNA fragmentation was significantly higher after 2 h (8.81 ± 0.93%, P = 0.004) and 3 h (10.76 ± 0.89%, P < 0.0001) of incubation compared to 0 h (4.38 ± 0.8%). A positive correlation was found between the incubation time and sperm DNA damage (P < 0.0001). Prolonged incubation of prepared normozoospermic samples at 37 °C is associated with higher rates of sperm DNA fragmentation. Therefore, sperm samples intended for ART procedures should be used within 2 h of incubation at 37 °C. © 2013 Blackwell Verlag GmbH.

  8. Significance of dredging on sediment denitrification in Meiliang Bay, China: A year long simulation study

    USGS Publications Warehouse

    Zhong, Jicheng; Fan, Chengxin; Zhang, Lu; Edward, Hall; Ding, Shiming; Li, Bao; Liu, Guofeng

    2010-01-01

    An experiment for studying the effects of sediment dredging on denitrification in sediments was carried out through a one-year incubation of undredged (control) and dredged cores in laboratory. Dredging the upper 30 cm of sediment can significantly affect physico-chemical characteristics of sediments. Less degradation of organic matter in the dredged sediments was found during the experiment. Denitrification rates in the sediments were estimated by the acetylene blockage technique, and ranged from 21.6 to 102.7 nmol N2/(g dry weight (dw) x hr) for the undredged sediment and from 6.9 to 26.9 nmol N2/(g dw x hr) for dredged sediments. The denitrification rates in the undredged sediments were markedly higher (p < 0.05) than those in the dredged sediments throughout the incubation, with the exception of February 2006. The importance of various environmental factors on denitrification was assessed, which indicated that denitrification was regulated by temperature. Nitrate was probably the key factor limiting denitrification in both undredged and dredged sediments. Organic carbon played some role in determining the denitrification rates in the dredged sediments, but not in the undredged sediments. Sediment dredging influenced the mineralization of organic matter and denitrification in the sediment; and therefore changed the pattern of inherent cycling of nitrogen.

  9. Double wall versus single wall incubator for reducing heat loss in very low birth weight infants in incubators.

    PubMed

    Laroia, N; Phelps, D L; Roy, J

    2007-04-18

    Studies have shown improved survival of newborn infants maintained in the thermoneutral range. The concept of an incubator with additional insulation, a double plexiglass wall, is appealing for very low birth weight infants as it may help to provide a thermoneutral environment. To assess the effects of double walled incubator versus a single wall incubator on insensible water loss, rate of oxygen consumption, episodes of hypothermia, time to regain birth weight, duration of hospitalization and infant mortality in premature infants. The standard search strategy of the Cochrane Neonatal Review Group was used. This included searches of electronic databases: Oxford Database of Perinatal Trials, Cochrane Central Register of Controlled Trials (CENTRAL, The Cochrane Library, Issue 1, 2006), MEDLINE (1966 - 2006), EMBASE, previous reviews including cross references, abstracts, conference and symposia proceedings, expert informants in all published languages, and CINAHL (1982 - 2006). Only studies using random or quasi-random methods of allocation were considered for this review. Eligible studies assessed at least one of the outcome variables identified as important to this topic. Independent data extraction and quality assessment of included trials was conducted by the review authors. Data were analyzed using generic inverse variance methodology and weighted mean difference (WMD). Results are presented with 95% confidence intervals. Meta-analysis was undertaken using a fixed effect model. Three studies met the criteria. Four other studies were excluded, as they did not compare double versus single wall incubators (details of the studies are given in the included and excluded studies section). Double wall incubators have the advantage of decreasing heat loss, decreasing heat production and decreasing radiant heat loss when compared to single wall incubators. There is also the advantage of reduced oxygen consumption. A minimal increase in conductive heat loss was noted when

  10. Summary of Research Report Lewis Incubator for Technology

    NASA Technical Reports Server (NTRS)

    Zeman, Wayne P.

    2000-01-01

    This report summarizes the work done to establish and operate the Lewis Incubator for Technology (LIFT) for the period July 1996 through September 2000. The Lewis Incubator helps the startup and growth of technology-based businesses with the potential to incorporate technology from the NASA Glenn Research Center. During the grant period, LIFT began operation, met or exceeded all key performance measures, and continues its operation through a new cooperative agreement with NASA Glenn and also through continued funding from the State of Ohio.

  11. A comparison of artificial incubation and natural incubation hatching success of gopher tortoise (Gopherus polyphemus) eggs in southern Mississippi

    USGS Publications Warehouse

    Noel, Krista M.; Qualls, Carl P.; Ennen, Joshua R.

    2012-01-01

    Recent studies have found that Gopher Tortoise, Gopherus polyphemus, populations in southern Mississippi exhibit low recruitment, due in part to very low hatching success of their eggs. We sought to determine if the cause(s) of this low hatching success was related to egg quality (intrinsic factors), unsuitability of the nest environment (extrinsic factors), or a combination of the two. In 2003, hatching success was monitored simultaneously for eggs from the same clutches that were incubated in the laboratory and left to incubate in nests. A subset of randomly chosen eggs from each clutch was incubated in the laboratory under physical conditions that were known to be conducive to successful hatching to estimate the proportion of eggs that were capable of hatching in a controlled setting. Hatching success in the laboratory was compared with that of eggs incubated in natural nests to estimate the proportion of eggs that failed to hatch presumably from extrinsic factors. Laboratory hatching success was 58.8%, suggesting that roughly 40% of the eggs were intrinsically incapable of hatching even when incubated under controlled conditions. Hatching success in natural nests, 16.7%, was significantly lower than hatching success in the laboratory, suggesting that approximately 42.1% of eggs were capable of hatching but failed to hatch due to some extrinsic aspect(s) of the nest environment. Thus, the low hatching success of Gopher Tortoise eggs in southern Mississippi appears to be attributable to a combination of intrinsic (egg quality) and extrinsic (nest environment) factors.

  12. Thermal management in closed incubators: New software for assessing the impact of humidity on the optimal incubator air temperature.

    PubMed

    Delanaud, Stéphane; Decima, Pauline; Pelletier, Amandine; Libert, Jean-Pierre; Durand, Estelle; Stephan-Blanchard, Erwan; Bach, Véronique; Tourneux, Pierre

    2017-08-01

    Low-birth-weight (LBW) neonates are nursed in closed incubators to prevent transcutaneous water loss. The RH's impact on the optimal incubator air temperature setting has not been studied. On the basis of a clinical cohort study, we modelled all the ambient parameters influencing body heat losses and gains. The algorithm quantifies the change in RH on the air temperature, to maintain optimal thermal conditions in the incubator. Twenty-three neonates (gestational age (GA): 30.0 [28.9-31.6] weeks) were included. A 20% increase and a 20% decrease in the RH induced a change in air temperature of between -1.51 and +1.85°C for a simulated 650g neonate (GA: 26 weeks), between -1.66 and +1.87°C for a 1000g neonate (GA: 31 weeks), and between -1.77 and +1.97°C for a 2000g neonate (GA: 33 weeks) (p<0.001). According to regression analyses, the optimal incubator air temperature=a+b relative humidity +c age +d weight (p<0.001). We have developed new mathematical equations for calculating the optimal temperature for the incubator air as a function of the latter's relative humidity. The software constitutes a decision support tool for improving patient care in routine clinical practice. Copyright © 2017 IPEM. Published by Elsevier Ltd. All rights reserved.

  13. Bubble growth and migration in sediments tracked by X-ray computed microtomography

    NASA Astrophysics Data System (ADS)

    Liu, Liu

    2017-04-01

    Biogenic methane gas bubble formation and migration in surface aquatic sediments is an important process for global biogeochemistry cycling at sediment-water interface. However, the mechanisms of bubble migration in sediment are still unclear. A long-term (20 d) laboratory incubation was done to study methane bubble growth and migration mechanisms in homogenized natural sediments (clay, sand). During the incubation experiment, X-ray computed microtomography (micro-CT) was employed to track bubble formation dynamics. At the end of bubble growth experiment, two micro-CT column scans were done to track bubble migration patterns in sediment in response to a scheduled water level change. The incubation shows capillary invasion and sediment expansion were both important in bubble growth in the two investigated sediments. Associated with sediment expansion, a significant gas-enriched upper layer (8 cm) was observed in sand. Bubbles were observed to move only in the surface layer of sand, in contrast to the entire depth in clayey sediment. Bubble migration in sediments was primarily determined by the mobility of bubbles, which was determined by the relative size of pores (in sediment) and bubbles. The findings will provide a solid basis for a methane bubble release model in sediments.

  14. Oxygen and sulfur isotope fractionation during methane dependent sulfate reduction in high pressure continuous incubation studies

    NASA Astrophysics Data System (ADS)

    Deusner, C.; Brunner, B.; Holler, T.; Widdel, F.; Ferdelman, T. G.

    2009-12-01

    The anaerobic oxidation of methane (AOM) coupled to sulfate reduction in marine sediments is an important sink in the global methane budget. However, many aspects of methane dependent sulfate reduction are not fully understood. We developed a novel high pressure biotechnical system to simulate marine conditions with high concentrations of dissolved gases, e.g. at gas seeps and gas hydrate systems. The system allows for batch, fed-batch and continuous gas-phase free incubation. We employ this system to study the kinetics and isotope fractionation during AOM at varying methane partial pressures up to 10 MPa. We present the results of long-term continuous and fed-batch incubations with highly active naturally enriched biomass from microbial mats from the Black Sea. During these experiments the methane partial pressure was increased stepwise from 0.1 to 10 MPa. The methane dependent sulfate reduction rate increased from 0.1 mmol/l/d to 3.5 mmol/l/d resulting from the increase in methane concentration and microbial growth. Sulfate reduction was negligible in the absence of methane. The sulfur and oxygen isotope fractionation during sulfate reduction was strongly influenced by the concentration of dissolved methane. Sulfur isotope fractionation was highest at low methane concentrations, and lowest at high methane concentrations. Relative to sulfate reduction rates, oxygen isotope exchange between sulfate and water was highest at low methane concentrations, and lowest at high methane concentrations.

  15. Sediment Acoustics

    DTIC Science & Technology

    1998-09-30

    the sediment column. These measurements provide the “ground truth ” for assessing the validity and usefulness of the basic geoacoustic model. APPROACH...obtain porosity, grain size distribution and other fundamental properties, the objective being to establish the ground truth at each Report Documentation

  16. Sediment Acoustics

    DTIC Science & Technology

    2000-09-30

    the sediment column. These measurements provide the “ground truth ” for assessing the validity and usefulness of the basic geoacoustic model. APPROACH...properties, the objective being to establish the ground truth at each test location and develop correlations between such quantities as in-situ shear

  17. Broiler incubation. 1. Effect of elevated temperature during late incubation on body weight and organs of chicks.

    PubMed

    Leksrisompong, N; Romero-Sanchez, H; Plumstead, P W; Brannan, K E; Brake, J

    2007-12-01

    Three experiments were conducted to investigate the effect of increased egg temperature during the final third of incubation on BW, yolk sac, heart, and digestive organs of broiler chicks at hatching. Egg temperatures were found to be approximately 1.0 to 1.5 degrees C higher than incubator air temperature. Elevated egg temperature (39.5 degrees C) after embryonic day 14 generally accelerated hatching time but decreased the relative weight of the heart in all 3 experiments, whereas BW and relative weights of the gizzard, proventriculus, and small intestines were significantly smaller in 2 of 3 experiments as compared with the control (approximately 38.2 degrees C). Relative weights of the yolk sac or liver were significantly larger due to elevated egg temperature in single experiments only. A striking feature of the chicks that developed at an elevated egg temperature was their white color as compared with the yellow color of chicks from eggs incubated at more normal temperatures.

  18. Accuracy of egg flotation throughout incubation to determine embryo age and incubation day in water bird nests

    USGS Publications Warehouse

    Ackerman, Joshua T.; Eagles-Smith, Collin A.

    2010-01-01

    Floating bird eggs to estimate their age is a widely used technique, but few studies have examined its accuracy throughout incubation. We assessed egg flotation for estimating hatch date, day of incubation, and the embryo's developmental age in eggs of the American Avocet (Recurvirostra americana), Black-necked Stilt (Himantopus mexicanus), and Forster's Tern (Sterna forsteri). Predicted hatch dates based on egg flotation during our first visit to a nest were highly correlated with actual hatch dates (r = 0.99) and accurate within 2.3 ?? 1.7 (SD) days. Age estimates based on flotation were correlated with both day of incubation (r = 0.96) and the embryo's developmental age (r = 0.86) and accurate within 1.3 ?? 1.6 days and 1.9 ?? 1.6 days, respectively. However, the technique's accuracy varied substantially throughout incubation. Flotation overestimated the embryo's developmental age between 3 and 9 days, underestimated age between 12 and 21 days, and was most accurate between 0 and 3 days and 9 and 12 days. Age estimates based on egg flotation were generally accurate within 3 days until day 15 but later in incubation were biased progressively lower. Egg flotation was inaccurate and overestimated embryo age in abandoned nests (mean error: 7.5 ?? 6.0 days). The embryo's developmental age and day of incubation were highly correlated (r = 0.94), differed by 2.1 ?? 1.6 days, and resulted in similar assessments of the egg-flotation technique. Floating every egg in the clutch and refloating eggs at subsequent visits to a nest can refine age estimates. ?? The Cooper Ornithological Society 2010.

  19. Sediment Toxicity Testing

    EPA Science Inventory

    Sediment toxicity testing has become a fundamental component of regulatory frameworks for assessing the risks posed by contaminated sediments and for development of chemical sediment quality guidelines. Over the past two decades, sediment toxicity testing methods have advanced co...

  20. Sediment Toxicity Testing

    EPA Science Inventory

    Sediment toxicity testing has become a fundamental component of regulatory frameworks for assessing the risks posed by contaminated sediments and for development of chemical sediment quality guidelines. Over the past two decades, sediment toxicity testing methods have advanced co...

  1. Designing the Online Collaboratory for the Global Social Benefit Incubator

    ERIC Educational Resources Information Center

    Hernandez-Ramos, Pedro; Koch, James L.; Bruno, Albert; Carlson, Eric

    2007-01-01

    Pedro Hernandez-Ramos, James L. Koch, Albert Bruno, and Eric Carlson describe the online collaboratory planned for the Global Social Benefit Incubator (GSBI), an international education program designed to serve social benefit entrepreneurs working in the fields of education, health, economic development, the environment, and equality around the…

  2. Efficient Swath Mapping Laser Altimetry Demonstration Instrument Incubator Program

    NASA Technical Reports Server (NTRS)

    Yu, Anthony W.; Krainak, Michael A,; Harding, David J.; Abshire, James B.; Sun, Xiaoli; Cavanaugh, John; Valett, Susan

    2010-01-01

    In this paper we will discuss our eighteen-month progress of a three-year Instrument Incubator Program (IIP) funded by NASA Earth Science Technology Office (ESTO) on swath mapping laser altimetry system. This paper will discuss the system approach, enabling technologies and instrument concept for the swath mapping laser altimetry.

  3. Graduate Entrepreneurship Incubation Environments: A Framework of Key Success Factors

    ERIC Educational Resources Information Center

    Al-Dajani, Haya; Dedoussis, Evangelos; Watson, Erika; Tzokas, Nikalaos

    2014-01-01

    The benchmarking framework developed in this study is specifically designed for higher education institutions to consider when developing environments to encourage entrepreneurship among their students, graduates and staff. The objective of the study was to identify key success factors of Graduate Entrepreneurship Incubator Environments (GEIEs)…

  4. Incubation of food craving is independent of macronutrient composition

    PubMed Central

    Darling, Rebecca A.; Dingess, Paige M.; Schlidt, Kevin C.; Smith, Erin M.; Brown, Travis E.

    2016-01-01

    Cues previously paired with rewarding stimuli induce a time-dependent increase in the motivational craving state (incubation of craving). Whether there is an increase in craving for high-fat (HF) food over time, which may contribute to overeating and obesity, has not been determined. We hypothesized that cues paired with HF pellets would elicit a greater incubation of craving effect than those paired with standard chow (SC) pellets. Rats exposed to cues associated with either HF or SC pellets demonstrated equivalent levels of craving over an abstinence period of 30 days. Diet preference tests between SC pellets and LabDiet revealed that SC pellets were preferred over LabDiet. Rats reared on SC pellets exclusively, did not display incubation of craving for SC pellets, suggesting that prior history with the food plays an important role in cue-induced seeking behavior. Results identified cues previously associated with food undergo a comparable magnitude of incubation of craving. When ingestive behavior was measured after 30 days of abstinence, rats significantly increased their consumption of HF pellets. Our results indicate that food cues gain importance over time, trigger increased approach behaviors, and increased consumption of HF food following abstinence. This may contribute to overeating and the development of obesity. PMID:27485660

  5. Growth of Campylobacter Incubated Aerobically in Media Supplemented with Peptones

    USDA-ARS?s Scientific Manuscript database

    Growth of Campylobacter cultures incubated aerobically in media supplemented with peptones was studied, and additional experiments were conducted to compare growth of the bacteria in media supplemented with peptones to growth in media supplemented with fumarate-pyruvate-minerals-vitamins (FPMV). A b...

  6. Longer incubation times for yeast fungemia: importance for presumptive treatment.

    PubMed

    Paugam, André; Ancelle, Thierry; Lortholary, Olivier; Bretagne, Stéphane

    2014-10-01

    Isolation rates of Candida glabrata at ≤2 days were 8.9% and 34.8% at >2 days; for Cryptococcus neoformans, they were 0.9% and 8.6%, respectively (1741 fungemia analyzed). An incubation time >2 days supports candins as presumptive treatment for C. glabrata, keeping in mind the risk of Cryptococcus fungemia.

  7. Designing a Low-Cost Multifunctional Infant Incubator.

    PubMed

    Tran, Kevin; Gibson, Aaron; Wong, Don; Tilahun, Dagmawi; Selock, Nicholas; Good, Theresa; Ram, Geetha; Tolosa, Leah; Tolosa, Michael; Kostov, Yordan; Woo, Hyung Chul; Frizzell, Michael; Fulda, Victor; Gopinath, Ramya; Prasad, J Shashidhara; Sudarshan, Hanumappa; Venkatesan, Arunkumar; Kumar, V Sashi; Shylaja, N; Rao, Govind

    2014-06-01

    Every year, an unacceptably large number of infant deaths occur in developing nations, with premature birth and asphyxia being two of the leading causes. A well-regulated thermal environment is critical for neonatal survival. Advanced incubators currently exist, but they are far too expensive to meet the needs of developing nations. We are developing a thermodynamically advanced low-cost incubator suitable for operation in a low-resource environment. Our design features three innovations: (1) a disposable baby chamber to reduce infant mortality due to nosocomial infections, (2) a passive cooling mechanism using low-cost heat pipes and evaporative cooling from locally found clay pots, and (3) insulated panels and a thermal bank consisting of water that effectively preserve and store heat. We developed a prototype incubator and visited and presented our design to our partnership hospital site in Mysore, India. After obtaining feedback, we have determined realistic, nontrivial design requirements and constraints in order to develop a new prototype incubator for clinical trials in hospitals in India. © 2014 Society for Laboratory Automation and Screening.

  8. Graduate Entrepreneurship Incubation Environments: A Framework of Key Success Factors

    ERIC Educational Resources Information Center

    Al-Dajani, Haya; Dedoussis, Evangelos; Watson, Erika; Tzokas, Nikalaos

    2014-01-01

    The benchmarking framework developed in this study is specifically designed for higher education institutions to consider when developing environments to encourage entrepreneurship among their students, graduates and staff. The objective of the study was to identify key success factors of Graduate Entrepreneurship Incubator Environments (GEIEs)…

  9. Incubator Baby Shows: A Medical and Social Frontier

    ERIC Educational Resources Information Center

    Lieberman, Hannah

    2001-01-01

    America's first hospitals for premature infants were built at the turn of the twentieth century at fairs, amusement parks, and expositions. These hospitals represented both a medical and a social frontier. They had a great impact on American medicine because they demonstrated the success of caring for premature infants using incubators. The…

  10. Alternating Incubation Effects in the Generation of Category Exemplars

    ERIC Educational Resources Information Center

    Smith, Steven M.; Gerkens, David R.; Angello, Genna

    2017-01-01

    Four experiments tested the forgetting fixation hypothesis of incubation effects, comparing continuous vs. alternating generation of exemplars from three different types of categories. In two experiments, participants who listed as many members as possible from two different categories produced more responses, and more novel responses, when they…

  11. Mind Wandering and the Incubation Effect in Insight Problem Solving

    ERIC Educational Resources Information Center

    Tan, Tengteng; Zou, Hong; Chen, Chuansheng; Luo, Jin

    2015-01-01

    Although many anecdotes suggest that creative insights often arise during mind wandering, empirical research is still sparse. In this study, the number reduction task (NRT) was used to assess whether insightful solutions were related to mind wandering during the incubation stage of the creative process. An experience sampling paradigm was used to…

  12. Food conditions affect yolk testosterone deposition but not incubation attendance.

    PubMed

    Vergauwen, Jonas; Goerlich, Vivian C; Groothuis, Ton G G; Eens, Marcel; Müller, Wendt

    2012-03-01

    In many bird species with hatching asynchrony, yolk androgens increase across the laying sequence. This has been hypothesized to represent a compensatory mechanism for disadvantages of later-hatching chicks - via positive effects of yolk androgens on early competitiveness and growth. However, the costs and benefits of this compensatory strategy probably depend on environmental factors determining the survival chances of the chicks such as the food conditions, which should, therefore, influence maternal yolk androgen deposition. We studied the consequences of manipulated food conditions on the expected level of hatching asynchrony in canaries (Serinus canaria) assigning females to either a low (=LQ) or high quality (=HQ) diet. We measured the incubation behaviour (as incubation attendance) and the yolk androgen deposition in order to investigate whether and how females modulate hatching asynchrony in relation to the food conditions. Females on a HQ diet laid larger and heavier clutches, showed a stronger increase in yolk testosterone content towards the last-laid eggs, but did not alter their incubation attendance. Thus, females on a HQ diet seem to favour the survival of later hatching chicks, as indicated by their yolk testosterone deposition pattern. However, females on a HQ diet laid larger clutches and might need to compensate more in order to achieve a similar degree of hatching asynchrony than females on a LQ diet, given the lack of plasticity in incubation attendance. This suggests that canary females respond to food manipulations mainly via changes in clutch size rather than by altering the degree of hatching asynchrony.

  13. Incubation of food craving is independent of macronutrient composition.

    PubMed

    Darling, Rebecca A; Dingess, Paige M; Schlidt, Kevin C; Smith, Erin M; Brown, Travis E

    2016-08-03

    Cues previously paired with rewarding stimuli induce a time-dependent increase in the motivational craving state (incubation of craving). Whether there is an increase in craving for high-fat (HF) food over time, which may contribute to overeating and obesity, has not been determined. We hypothesized that cues paired with HF pellets would elicit a greater incubation of craving effect than those paired with standard chow (SC) pellets. Rats exposed to cues associated with either HF or SC pellets demonstrated equivalent levels of craving over an abstinence period of 30 days. Diet preference tests between SC pellets and LabDiet revealed that SC pellets were preferred over LabDiet. Rats reared on SC pellets exclusively, did not display incubation of craving for SC pellets, suggesting that prior history with the food plays an important role in cue-induced seeking behavior. Results identified cues previously associated with food undergo a comparable magnitude of incubation of craving. When ingestive behavior was measured after 30 days of abstinence, rats significantly increased their consumption of HF pellets. Our results indicate that food cues gain importance over time, trigger increased approach behaviors, and increased consumption of HF food following abstinence. This may contribute to overeating and the development of obesity.

  14. Mind Wandering and the Incubation Effect in Insight Problem Solving

    ERIC Educational Resources Information Center

    Tan, Tengteng; Zou, Hong; Chen, Chuansheng; Luo, Jin

    2015-01-01

    Although many anecdotes suggest that creative insights often arise during mind wandering, empirical research is still sparse. In this study, the number reduction task (NRT) was used to assess whether insightful solutions were related to mind wandering during the incubation stage of the creative process. An experience sampling paradigm was used to…

  15. Assessment of predation risk through referential communication in incubating birds

    NASA Astrophysics Data System (ADS)

    Suzuki, Toshitaka N.

    2015-05-01

    Parents of many bird species produce alarm calls when they approach and deter a nest predator in order to defend their offspring. Alarm calls have been shown to warn nestlings about predatory threats, but parents also face a similar risk of predation when incubating eggs in their nests. Here, I show that incubating female Japanese great tits, Parus minor, assess predation risk by conspecific alarm calls given outside the nest cavity. Tits produce acoustically discrete alarm calls for different nest predators: “jar” calls for snakes and “chicka” calls for other predators such as crows and martens. Playback experiments revealed that incubating females responded to “jar” calls by leaving their nest, whereas they responded to “chicka” calls by looking out of the nest entrance. Since snakes invade the nest cavity, escaping from the nest helps females avoid snake predation. In contrast, “chicka” calls are used for a variety of predator types, and therefore, looking out of the nest entrance helps females gather information about the type and location of approaching predators. These results show that incubating females derive information about predator type from different types of alarm calls, providing a novel example of functionally referential communication.

  16. Phosphorus flux from bottom sediments in Lake Eucha, Oklahoma.

    PubMed

    Haggard, B E; Moore, P A; Delaune, P B

    2005-01-01

    Phosphorus inputs into reservoirs include external sources from the watershed and internal sources from the reservoir bottom sediments. This study quantified sediment P flux in Lake Eucha, northeastern Oklahoma, USA, and evaluated the effectiveness of chemical treatment to reduce sediment P flux. Six intact sediment-water columns were collected from three sites in Lake Eucha near the reservoir channel at depths of 10 to 15 m. Three intact sediment and water columns from each site were incubated for 21 d at approximately 22 degrees C under aerobic conditions, and three were incubated under anaerobic conditions (N2 with 300 ppm CO2); sediment P flux was estimated over the 21 d for each core. The overlying water in the cores was bubbled with air for approximately 1 wk and then treated with aluminum sulfate (alum). The cores were incubated at approximately 22 degrees C for an additional 14 d under aerobic or anaerobic conditions, and sediment P flux after alum treatment was estimated for each core. Sediment P flux was approximately four times greater under anaerobic conditions compared with aerobic conditions. Alum treatment of the intact sediment-water columns reduced (8x) sediment P flux under anaerobic conditions. Internal P flux (1.03 and 4.40 mg m(-2) d(-1) under aerobic and anaerobic conditions, respectively) was greater than external P flux (0.13 mg m(-2) d(-1)). The internal P load (12 Mg yr(-1)) from reservoir bottom sediments was almost 25% of the external P load (approximately 48 Mg yr(-1)) estimated using a calibrated watershed model.

  17. A System for Incubations at High Gas Partial Pressure

    PubMed Central

    Sauer, Patrick; Glombitza, Clemens; Kallmeyer, Jens

    2012-01-01

    High-pressure is a key feature of deep subsurface environments. High partial pressure of dissolved gasses plays an important role in microbial metabolism, because thermodynamic feasibility of many reactions depends on the concentration of reactants. For gases, this is controlled by their partial pressure, which can exceed 1 MPa at in situ conditions. Therefore, high hydrostatic pressure alone is not sufficient to recreate true deep subsurface in situ conditions, but the partial pressure of dissolved gasses has to be controlled as well. We developed an incubation system that allows for incubations at hydrostatic pressure up to 60 MPa, temperatures up to 120°C, and at high gas partial pressure. The composition and partial pressure of gasses can be manipulated during the experiment. To keep costs low, the system is mainly made from off-the-shelf components with only very few custom-made parts. A flexible and inert PVDF (polyvinylidene fluoride) incubator sleeve, which is almost impermeable for gases, holds the sample and separates it from the pressure fluid. The flexibility of the incubator sleeve allows for sub-sampling of the medium without loss of pressure. Experiments can be run in both static and flow-through mode. The incubation system described here is usable for versatile purposes, not only the incubation of microorganisms and determination of growth rates, but also for chemical degradation or extraction experiments under high gas saturation, e.g., fluid–gas–rock-interactions in relation to carbon dioxide sequestration. As an application of the system we extracted organic compounds from sub-bituminous coal using H2O as well as a H2O–CO2 mixture at elevated temperature (90°C) and pressure (5 MPa). Subsamples were taken at different time points during the incubation and analyzed by ion chromatography. Furthermore we demonstrated the applicability of the system for studies of microbial activity, using samples from the Isis mud volcano. We could

  18. A system for incubations at high gas partial pressure.

    PubMed

    Sauer, Patrick; Glombitza, Clemens; Kallmeyer, Jens

    2012-01-01

    High-pressure is a key feature of deep subsurface environments. High partial pressure of dissolved gasses plays an important role in microbial metabolism, because thermodynamic feasibility of many reactions depends on the concentration of reactants. For gases, this is controlled by their partial pressure, which can exceed 1 MPa at in situ conditions. Therefore, high hydrostatic pressure alone is not sufficient to recreate true deep subsurface in situ conditions, but the partial pressure of dissolved gasses has to be controlled as well. We developed an incubation system that allows for incubations at hydrostatic pressure up to 60 MPa, temperatures up to 120°C, and at high gas partial pressure. The composition and partial pressure of gasses can be manipulated during the experiment. To keep costs low, the system is mainly made from off-the-shelf components with only very few custom-made parts. A flexible and inert PVDF (polyvinylidene fluoride) incubator sleeve, which is almost impermeable for gases, holds the sample and separates it from the pressure fluid. The flexibility of the incubator sleeve allows for sub-sampling of the medium without loss of pressure. Experiments can be run in both static and flow-through mode. The incubation system described here is usable for versatile purposes, not only the incubation of microorganisms and determination of growth rates, but also for chemical degradation or extraction experiments under high gas saturation, e.g., fluid-gas-rock-interactions in relation to carbon dioxide sequestration. As an application of the system we extracted organic compounds from sub-bituminous coal using H(2)O as well as a H(2)O-CO(2) mixture at elevated temperature (90°C) and pressure (5 MPa). Subsamples were taken at different time points during the incubation and analyzed by ion chromatography. Furthermore we demonstrated the applicability of the system for studies of microbial activity, using samples from the Isis mud volcano. We could

  19. Composition and diversity of microbial communities recovered from surrogate minerals incubated in an acidic uranium-contaminated aquifer

    SciTech Connect

    Reardon, Catherine L.; Cummings, David E.; Petzke, Lynn M.; Kinsall, Barry Lee; Watson, David B; Peyton, Brent M.; Geesey, Gill G.

    2004-10-01

    Our understanding of subsurface microbiology is hindered by the inaccessibility of this environment, particularly when the hydrogeologic medium is contaminated with toxic substances. In this study, surrogate geological media contained in a porous receptacle were incubated in a well within the saturated zone of a pristine region of an aquifer to capture populations from the extant communities. After an 8-week incubation, the media were recovered, and the microbial community that developed on each medium was compared to the community recovered from groundwater and native sediments from the same region of the aquifer, using 16S DNA coding for rRNA (rDNA)-based terminal restriction fragment length polymorphism (T-RFLP). The groundwater and sediment communities were highly distinct from one another, and the communities that developed on the various media were more similar to groundwater communities than to sediment communities. 16S rDNA clone libraries of communities that developed on particles of a specular hematite medium incubated in the same well as the media used for T-RFLP analysis were compared with those obtained from an acidic, uranium-contaminated region of the same aquifer. The hematite-associated community formed in the pristine area was highly diverse at the species level, with 25 distinct phylotypes identified, the majority of which (73%) were affiliated with the {beta}-Proteobacteria. Similarly, the hematite-associated community formed in the contaminated area was populated in large part by {beta}-Proteobacteria (62%); however, only 13 distinct phylotypes were apparent. The three numerically dominant clones from the hematite-associated community from the contaminated site were affiliated with metal- and radionuclide-tolerant or acidophilic taxa, consistent with the environmental conditions. Only two populations were common to both sites.

  20. Incubating Innovation: A standard model for nurturing new businesses, the incubator gains prominence in the world of biotech.

    PubMed

    Grifantini, Kristina

    2015-01-01

    Incubators, accelerators, innovation centers, launch pads. Everyone defines the idea a bit differently, but, generally, these infrastructures refer to a subsidized space where fledgling companies get support?a combination of mentorship, funding, low rent, networking opportunities, and other training?with the goal of propelling early businesses to success.

  1. Low sediment-water gas exchange in a small boreal lake

    NASA Astrophysics Data System (ADS)

    Kokic, Jovana; Sahlée, Erik; Brand, Andreas; Sobek, Sebastian

    2016-09-01

    Boreal lake sediments are carbon sources by producing CO2. CO2 flux from sediments is partly controlled by turbulence in the water column, which is not given the same attention as CO2 production rates in current estimates of CO2 fluxes from sediments. We quantified the in situ CO2 flux across the sediment-water interface in a small (0.07 km2) lake in Sweden by measuring the in situ O2 flux with the Eddy Correlation (EC) method and using the apparent respiratory quotient (CO2 production:O2 consumption) derived from sediment incubations. We demonstrate that median CO2 flux estimated by EC was 70% smaller than estimated by sediment incubations with artificial water mixing (1.0 × 10-2 and 3.6 × 10-2 µmol C m-2 s-1, respectively). Additionally, we show that inducing artificial mixing of supernatant water in the incubation experiment has a positive effect on observed fluxes, enhancing CO2 flux by 30% compared to not mixing supernatant water. We suggest that the difference between the methods is due to the strong artificial water mixing in sediment incubations compared to the turbulent mixing in this small lake. Additionally, low O2 supply to sediment aerobic heterotrophic microbes during extended periods of low water currents can inhibit respiration and thus CO2 production. These findings suggest that the sediment contribution to total lake CO2 emission might currently be overestimated for small boreal lakes. Care should be taken when upscaling sediment CO2 flux derived from incubation experiments to entire basins of small lakes, as incubation experiments are unlikely to accurately mimic in situ bottom water currents and gas exchange.

  2. New York Nano-Bio Molecular Information Technology (NYNBIT) Incubator

    SciTech Connect

    Das, Digendra K

    2008-12-19

    This project presents the outcome of an effort made by a consortium of six universities in the State of New York to develop a Center for Advanced technology (CAT) in the emerging field of Nano-Bio-Molecular Information Technology. The effort consists of activities such as organization of the NYNBIT incubator, collaborative research projects, development of courses, an educational program for high schools, and commercial start-up programs.

  3. A Common Loon incubates rocks as surrogates for eggs

    USGS Publications Warehouse

    Destefano, Stephen; Koenen, Kiana K. G.; Pereira, Jillian W.

    2013-01-01

    A nesting Gavia immer (Common Loon) was discovered incubating 2 rocks on a floating nest platform on the Quabbin reservoir in central Massachusetts for 43 days, well beyond the typical period of 28 days, before we moved in to investigate. The rocks were likely unearthed in the soil and vegetation used on the platform to create a more natural substrate for the nest. We suggest sifting through soil and vegetation to remove rocks before placing material on nest platforms.

  4. Escaping mental fixation: incubation and inhibition in creative problem solving.

    PubMed

    Koppel, Rebecca H; Storm, Benjamin C

    2014-01-01

    The inhibition underlying retrieval-induced forgetting has been argued to play a crucial role in the ability to overcome interference in memory and cognition. Supporting this conjecture, recent research has found that participants who exhibit greater levels of retrieval-induced forgetting are better at overcoming fixation on the Remote Associates Test (RAT) than are participants who exhibit reduced levels of retrieval-induced forgetting. If the ability to inhibit inappropriate responses improves the ability to solve fixated RAT problems, then reducing the fixation caused by inappropriate responses should reduce the correlation between retrieval-induced forgetting and problem solving. We tested this hypothesis by inserting an incubation period between two 30-second problem-solving attempts: half of the participants were given an incubation period (distributed condition), half were not (continuous condition). In the continuous condition retrieval-induced forgetting correlated positively with problem-solving performance during both the initial and final 30 seconds of problem solving. In the distributed condition retrieval-induced forgetting only correlated with problem-solving performance during the first 30 seconds of problem solving. This finding suggests that incubation reduces the need for inhibition by reducing the extent to which problem solvers suffer fixation.

  5. Incubation temperature modifies neonatal thermoregulation in the lizard Anolis carolinensis.

    PubMed

    Goodman, Rachel M; Walguarnery, Justin W

    2007-08-01

    The thermal environment experienced during embryonic development can profoundly affect the phenotype, and potentially the fitness, of ectothermic animals. We examined the effect of incubation temperature on the thermal preferences of juveniles in the oviparous lizard, Anolis carolinensis. Temperature preference trials were conducted in a laboratory thermal gradient within 48 hr of hatching and after 22-27 days of maintenance in a common laboratory environment. Incubation temperature had a significant effect on the upper limit of the interquartile range (IQR) of temperatures selected by A. carolinensis within the first 2 days after hatching. Between the first and second trials, the IQR of selected temperatures decreased significantly and both the lower limit of the IQR and the median selected temperature increased significantly. This, along with a significant incubation temperature by time interaction in the upper limit of the IQR, resulted in a pattern of convergence in thermoregulation among treatment groups. The initial differences in selected temperatures, as well as the shift in selected temperatures between first and second trials, demonstrate plasticity in temperature selection. As a previous study failed to find environmentally induced plasticity in temperature selection in adult A. carolinensis, this study suggests that this type of plasticity is exclusive to the period of neonatal development.

  6. Embryonic developmental patterns and energy expenditure are affected by incubation temperature in wood ducks (Aix sponsa).

    PubMed

    DuRant, S E; Hopkins, W A; Hepp, G R

    2011-01-01

    Recent research in birds has demonstrated that incubation temperature influences a suite of traits important for hatchling development and survival. We explored a possible mechanism for the effects on hatchling quality by determining whether incubation temperature influences embryonic energy expenditure of wood ducks (Aix sponsa). Because avian embryos are ectothermic, we hypothesized that eggs incubated at higher temperatures would have greater energy expenditure at any given day of incubation. However, because eggs incubated at lower temperatures take longer to hatch than embryos incubated at higher temperatures, we hypothesized that the former would expend more energy during incubation. We incubated eggs at three temperatures (35.0°, 35.9°, and 37.0°C) that fall within the range of temperatures of naturally incubated wood duck nests. We then measured the respiration of embryos every 3 d during incubation, immediately after ducks externally pipped, and immediately after hatching. As predicted, embryos incubated at the highest temperature had the highest metabolic rates on most days of incubation, and they exhibited faster rates of development. Yet, because of greater energy expended during the hatching process, embryos incubated at the lowest temperature expended 20%-37% more energy during incubation than did embryos incubated at the higher temperatures. Slower developmental rates and greater embryonic energy expenditure of embryos incubated at the lowest temperature could contribute to their poor physiological performance as ducklings compared with ducklings that hatch from eggs incubated at higher temperatures.

  7. Influence of Contact Time on the Extraction of 233Uranyl Spike and Contaminant Uranium From Hanford Sediment

    SciTech Connect

    Smith, Steven C.; Szecsody, James E.

    2011-11-01

    In this study 233Uranyl nitrate was added to uranium (U) contaminated Hanford 300 Area sediment and incubated under moist conditions for 1 year. It hypothesized that geochemical transformations and/or physical processes will result in decreased extractability of 233U as the incubation period increases, and eventually the extraction behavior of the 233U spike will be congruent to contaminant U that has been associated with sediment for decades. Following 1 week, 1 month, and 1 year incubation periods, sediment extractions were performed using either batch or dynamic (sediment column flow) chemical extraction techniques. Overall, extraction of U from sediment using batch extraction was less complicated to conduct compared to dynamic extraction, but dynamic extraction could distinguish the range of U forms associated with sediment which are eluted at different times.

  8. Cot-nursing versus incubator care for preterm infants.

    PubMed

    Gray, Peter H; Flenady, Vicki

    2011-08-10

    Preterm infants are usually nursed in incubators, but cot-nursing may provide an alternative. While there may be benefits of nursing preterm infants in open cots, there may be potential risks such as nosocomial infection caused by more handling due to easier access. To assess effects of cot-nursing versus incubator care on temperature control and weight gain in preterm infants. The standard search strategy of the Cochrane Neonatal Review Group was used. This included searches of electronic databases including the Cochrane Central Register of Controlled Trials (The Cochrane Library), Oxford Database of Perinatal Trials, MEDLINE, CINAHL, and EMBASE, as well as previous reviews including cross references through November 2009. All trials using random or quasi-random patient allocation in which infants receiving care in standard newborn cots were compared to infants managed in a conventional air heated incubator. The authors independently assessed trial quality and extracted data for the primary outcomes of temperature control and weight gain. Meta-analysis was conducted using a fixed-effect model. Eleven potential studies were identified of which five, involving 247 infants, were included in this review. When compared to incubator care, cot-nursing resulted in no significant difference in mean body temperature (MD 0.02 degrees C; 95% CI -0.02 to 0.07, four trials), though the one trial that reported on episodes of hyperthermia found this to be statistically more common in the cot-nursing group (RR 1.48; 95% CI 1.04 to 2.09). There were no statistically significant differences in weight gain. In the cot-nursing group, fewer infants were breast fed on discharge (typical RR 0.74; 95% CI 0.48 to 1.14, three trials, 150 infants) and fewer infants died prior to hospital discharge (typical RR 0.59, 95% CI 0.28 to 1.25, four trials, 235 infants) but these results failed to reach statistical significance. The comparison of cot-nursing using a heated water-filled mattress

  9. Use of hydrogen peroxide during incubation of landlocked fall Chinook salmon eggs in vertical-flow incubators

    USGS Publications Warehouse

    Barnes, M.E.; Gaikowski, M.P.

    2004-01-01

    Six different hydrogen peroxide treatment regimes were evaluated in a series of three trials with landlocked fall Chinook salmon Oncorhynchus tshawytscha eggs incubated in vertical-flow incubators. Six daily 15-min hydrogen peroxide treatment regimes (1,000 mg/L; 1,000 mg/L with a decrease to 500 mg/L during estimated blastopore formation; 2,000 mg/L; 2,000 mg/L with a decrease to 500 mg/L during estimated blastopore formation; 2,500 mg/L; and 2,500 mg/L with a decrease to 500 mg/L during estimated blastopore formation) were compared with daily 15-min treatments of 1,667 mg/L of formalin. Mortality at egg eye-up and fry hatch and from eye-up to hatch was significantly greater in eggs receiving the 2,500-mg/L hydrogen peroxide treatments throughout incubation and in those receiving 2,500 mg/L hydrogen peroxide with a decrease to 500 mg/L during blastopore formation than in either of the 1,000-mg/L hydrogen peroxide treatment regimes or the formalin-treated eggs in the first trial. No significant differences in mortality were observed among any of the treatments in the subsequent two trials with maximum hydrogen peroxide concentrations of 2,000 mg/L. Fungal infestations were observed primarily in the incubation trays treated at either of the 1,000-mg/L hydrogen peroxide regimens, as well as in those trays whose treatment concentrations were dropped to 500 mg/L during blastopore formation. Infestations were not observed in any of the formalin-treated trays. If minor fungal infestation is acceptable, then daily hydrogen peroxide treatments of 1,000 mg/L for 15 min would probably provide adequate fungal control compared with formalin usage.

  10. The bright incubate at night: sexual dichromatism and adaptive incubation division in an open-nesting shorebird

    PubMed Central

    Ekanayake, Kasun B.; Weston, Michael A.; Nimmo, Dale G.; Maguire, Grainne S.; Endler, John A.; Küpper, Clemens

    2015-01-01

    Ornamentation of parents poses a high risk for offspring because it reduces cryptic nest defence. Over a century ago, Wallace proposed that sexual dichromatism enhances crypsis of open-nesting females although subsequent studies found that dichromatism per se is not necessarily adaptive. We tested whether reduced female ornamentation in a sexually dichromatic species reduces the risk of clutch depredation and leads to adaptive parental roles in the red-capped plover Charadrius ruficapillus, a species with biparental incubation. Males had significantly brighter and redder head coloration than females. During daytime, when visually foraging predators are active, colour-matched model males incurred a higher risk of clutch depredation than females, whereas at night there was no difference in depredation risk between sexes. In turn, red-capped plovers maintained a strongly diurnal/nocturnal division of parental care during incubation, with males attending the nest largely at night when visual predators were inactive and females incubating during the day. We found support for Wallace's conclusion that reduced female ornamentation provides a selective advantage when reproductive success is threatened by visually foraging predators. We conclude that predators may alter their prey's parental care patterns and therefore may affect parental cooperation during care. PMID:25854884

  11. Microbial Reductive Transformation of Phyllosilicate Fe(III) and U(VI) in Fluvial Subsurface Sediments

    SciTech Connect

    Lee, Ji-Hoon; Fredrickson, Jim K.; Kukkadapu, Ravi K.; Boyanov, Maxim I.; Kemner, Kenneth M.; Lin, Xueju; Kennedy, David W.; Bjornstad, Bruce N.; Konopka, Allan; Moore, Dean A.; Resch, Charles T.; Phillips, Jerry L.

    2012-03-14

    The microbial reduction of Fe(III) and U(VI) were investigated in shallow aquifer sediments collected from subsurface Pleistocene flood deposits near the Hanford Reach of the Columbia River in Washington State. Increases in 0.5 N HCl-extractable Fe(II) were observed in incubated sediments and 57Fe Mössbauer spectroscopy revealed that Fe(III) associated with phyllosilicates and pyroxene was reduced to Fe(II). Aqueous uranium(VI) concentrations decreased in incubated Hanford sediments with the rate and extent being greater in sediment amended with organic carbon. X-ray absorption spectroscopy of bioreduced sediments indicated that 67-77% of the U signal was U(VI), probably as an adsorbed species associated with a new or modified reactive mineral phase. Phylotypes within the Deltaproteobacteria were more common in Hanford sediments incubated with U(VI) than without and in U(VI)-free incubations, members of the Clostridiales were dominant with sulfate-reducing phylotypes more common in the sulfate-amended sediments. These results demonstrate the potential for anaerobic reduction phyllosilicate Fe(III) and sulfate in Hanford unconfined aquifer sediments and biotransformations involving reduction and adsorption leading to decreased aqueous U concentrations.

  12. Direct Experimental Assessment of Microbial Activity in North Pond Sediments

    NASA Astrophysics Data System (ADS)

    Ferdelman, T. G.; Picard, A.; Morando, M.; Ziebis, W.

    2009-12-01

    North Pond, an isolated sediment pond located at 22°45’N on the western flank of the Mid-Atlantic Ridge, offered the opportunity to study microbial activities in deeply-buried low-activity sediments. About 8 x 15 km in size with sediment maximum thickness of about 300 m, North Pond is completely surrounded by exposed 7 Ma old basement. North Pond lies above the carbonate compensation depth at a water depth about 4500 m; hydrostatic pressure at the seafloor is about 45 MPa and the temperature is near 2°C. During the a R/V MS Merian cruise (MSM-11/1) in February -March 2009, 14 gravity cores of up to 9 m length were successfully obtained, from which samples were taken with 1-m resolution for experimental activity measurements. The goal of the experimental work was 1) to examine potential metabolic pathways in North Pond sediments and carbon assimilation pathways in this low-energy environment, and 2) explore the effects of pressure on microbial metabolic activities. As dissolved oxygen penetrated through all depths, sediments were aerobically sampled, processed and incubated at 4°C. Selected samples were immediately stored at in situ pressure until further use. The microbial uptake of both organic and inorganic carbon in selected North Pond sediment samples was investigated by following the fate of 14C in radio-labeled organic and organic compounds in North Pond sediment slurry incubations. Shipboard and on-shore experiments using 14C-leucine, 14C-glucose and 14C-bicarbonate were performed on selected cores. Day- to month- incubations were performed at 4°C. Parallel incubations were conducted at atmospheric pressure (0.1 MPa) and in situ pressure (~45 MPa). Either whole cell extraction (Kallmeyer et al., Limnol. Oceanogr.: Methods 6, 2008, 238-245) or protein-DNA extraction was carried on after various incubations to determine the fraction of 14C incorporated into cellular components. Formation of 14C-labeled CO2 was determined on samples incubated with 14C

  13. Impact of agricultural activities on anaerobic processes in stream sediments

    NASA Astrophysics Data System (ADS)

    Schade, J. D.; Ludwig, S.; Nelson, L. C.; Porterfield, J.; Sather, K. L.; Songpitak, M.; Spawn, S.; Weigel, B.

    2013-12-01

    Streams draining agriculture watersheds are subject to significant anthropogenic impacts, including sedimentation from soil erosion and high nitrate input from heavy fertilizer application. Sedimentation degrades habitat and can reduce hydrologic exchange between surface and subsurface waters. Disconnecting surface and subsurface flow reduces oxygen input to hyporheic water, increasing the extent of anoxic zones in stream sediments and creating hotspots for anaerobic processes like denitrification and methanogenesis that can be important sources of nitrous oxide and methane, both powerful greenhouse gases. Increased nitrate input may influence greenhouse gas fluxes from stream sediments by stimulating rates of denitrification and potentially reducing rates of methanogenesis, either through direct inhibition or by increasing competition for organic substrates from denitrifying bacteria. We hypothesized that accumulation of fine sediments in stream channels would result in high rates of methanogenesis in stream sediments, and that increased nitrate input from agricultural runoff would stimulate denitrification and reduce rates of methane production. Our work focused on streams in northern and central Minnesota, in particular on Rice Creek, a small stream draining an agricultural watershed. We used a variety of approaches to test our hypotheses, including surveys of methane concentrations in surface waters of streams ranging in sediment type and nitrate concentration, bottle incubations of sediment from several sites in Rice Creek, and the use of functional gene probes and RNA analyses to determine if genes for these processes are present and being expressed in stream sediments. We found higher methane concentrations in surface water from streams with large deposits of fine sediments, but significantly less methane in these streams when nitrate concentrations were high. We also found high potential for both methanogenesis and denitrification in sediment incubations

  14. Cot-nursing versus incubator care for preterm infants.

    PubMed

    Gray, P H; Flenady, V

    2003-01-01

    An optimal thermal environment is desirable for preterm infants. These infants are usually nursed in incubators, but cot-nursing may provide an alternative. Measures to assist the maintenance of body temperature for smaller infants in open cots include extra clothing/bedding, warming up the nursery and heating the cot mattress. Recently a heated water-filled mattress has been developed to maintain the temperature of a cot-nursed preterm infant. While there may be benefits of nursing preterm infants in open cots, there may be potential risks such as nosocomial infection caused by more handling due to easier access. Among preterm infants allocated to cot-nursing vs incubator care in neonatal period, to assess effects on their temperature control and weight gain. The standard search strategy of the Cochrane Neonatal Review Group was used. This included searches of electronic databases: Oxford Database of Perinatal Trials; Cochrane Controlled Trials Register (Cochrane Library Issue 4 2001); MEDLINE (1966-2001); and CINAHL (1982-2001), previous reviews including cross references. All trials using random or quasi-random patient allocation in which infants receiving care in standard newborn cots were compared to infants managed in a conventional air heated incubator. The authors independently assessed trial quality and extracted data for the primary outcomes of temperature control and weight gain. Meta-analysis was conducted using a fixed effects model. Results are presented as relative risk (RR) for categorical data and mean difference (MD) and weighted mean differences (WMD) for data measured on a continuous scale. Nine potential studies were identified of which four, involving 173 babies, were included in this review. When compared to incubator care, cot-nursing resulted in a statistically significantly higher mean body temperature (MD 0.30 degrees C; 95% CI 0.10, 0.50, one trial) and a decrease in proportion of infants not breast feeding at hospital discharge (RR 0

  15. Assessment of radiant temperature in a closed incubator.

    PubMed

    Décima, Pauline; Stéphan-Blanchard, Erwan; Pelletier, Amandine; Ghyselen, Laurent; Delanaud, Stéphane; Dégrugilliers, Loïc; Telliez, Frédéric; Bach, Véronique; Libert, Jean-Pierre

    2012-08-01

    In closed incubators, radiative heat loss (R) which is assessed from the mean radiant temperature (Tr) accounts for 40-60% of the neonate's total heat loss. In the absence of a benchmark method to calculate Tr--often considered to be the same as the air incubator temperature-errors could have a considerable impact on the thermal management of neonates. We compared Tr using two conventional methods (measurement with a black-globe thermometer and a radiative "view factor" approach) and two methods based on nude thermal manikins (a simple, schematic design from Wheldon and a multisegment, anthropometric device developed in our laboratory). By taking the Tr estimations for each method, we calculated metabolic heat production values by partitional calorimetry and then compared them with the values calculated from V(O2) and V(CO2) measured in 13 preterm neonates. Comparisons between the calculated and measured metabolic heat production values showed that the two conventional methods and Wheldon's manikin underestimated R, whereas when using the anthropomorphic thermal manikin, the simulated versus clinical difference was not statistically significant. In conclusion, there is a need for a safety standard for measuring TR in a closed incubator. This standard should also make available estimating equations for all avenues of the neonate's heat exchange considering the metabolic heat production and the modifying influence of the thermal insulation provided by the diaper and by the mattress. Although thermal manikins appear to be particularly appropriate for measuring Tr, the current lack of standardized procedures limits their widespread use.

  16. Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

    2001-01-01

    Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended

  17. Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

    2001-01-01

    Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended

  18. Trust as a determinant of entrepreneurs' preference to remain tenants in Turkish business incubators.

    PubMed

    Aşcigil, Semra F; Magner, Nace R; Temel, Elif Karabulut

    2011-08-01

    Relations of two types of trust by entrepreneurs with the entrepreneurs' preference to remain an incubator tenant were examined using questionnaire data from 67 owners of companies in 6 Turkish incubators. As hypothesized, trust in incubator management had a positive and unique relation with preference to remain an incubator tenant. However, trust in other incubator tenants did not show the hypothesized positive and unique relation with preference to remain a tenant; the results indicated the relation is negative.

  19. External Service Providers to the National Security Technology Incubator

    SciTech Connect

    2008-02-28

    This report documents the identification and assessment of external service providers to the National Security Technology Incubator (NSTI) program for southern New Mexico. The NSTI is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant to Arrowhead Center, New Mexico State University. This report contains 1) a summary of the services to be provided by NSTI; 2) organizational descriptions of external service providers; and 3) a comparison of NSTI services and services offered by external providers.

  20. Cellular Automata with network incubation in information technology diffusion

    NASA Astrophysics Data System (ADS)

    Guseo, Renato; Guidolin, Mariangela

    2010-06-01

    Innovation diffusion of network goods determines direct network externalities that depress sales for long periods and delay full benefits. We model this effect through a multiplicative dynamic market potential driven by a latent individual threshold embedded in a special Cellular Automata representation. The corresponding mean field approximation of its aggregate version is a Riccati equation with a closed form solution. This allows the detection of a change-point time separating an incubation period from a subsequent take-off due to a collective threshold (critical mass). Weighted nonlinear least squares are the main inferential methodology. An application is analysed with reference to USA fax machine diffusion.

  1. Denitrification in San Francisco Bay intertidal sediments

    USGS Publications Warehouse

    Oremland, Ronald S.; Umberger, Cindy; Culbertson, Charles W.; Smith, Richard L.

    1984-01-01

    The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO3− + NO2− concentrations (≤26 μM) were below the apparent Km (50 μM) for nitrate. During the rainy season, when ambient NO3− + NO2− concentrations were higher (37 to 89 μM), an accurate estimate of the Km could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N2O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N2O in the presence of C2H2 was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N2O loss was caused by incomplete blockage of N2O reductase by C2H2 at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 μmol of N2 m−2 h−1 (for undisturbed sediments) to 17 to 280 μmol of N2 m−2 h−1 (for shaken sediment slurries).

  2. Denitrification in San Francisco Bay intertidal sediments

    SciTech Connect

    Oremland, R.S.; Umberger, C.; Culbertson, C.W.; Smith, R.L.

    1984-05-01

    The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO/sub 3//sup -/ + NO/sub 2//sup -/ concentrations (less than or equal to26 ..mu..M) were below the apparent K/sub m/ (50 ..mu..M) for nitrate. During the rainy season, when ambient NO/sub 3//sup -/ + NO/sub 2//sup -/ concentrations were higher (37 to 89 ..mu..M), an accurate estimate of the K/sub m/ could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N/sub 2/O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N/sub 2/O in the presence of C/sub 2/H/sub 2/ was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cells suspensions of a marine pseudomonad confirmed that this N/sub 2/O loss was caused by incomplete blockage of N/sub 2/O reductase by C/sub 2/H/sub 2/ at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 ..mu..mol of N/sub 2/ m/sup -2/ h/sup -1/ (for undisturbed sediments) to 17 to 280 ..mu..mol of N/sub 2/ m/sup -2/ h/sup -1/ (for shaken sediment slurries). 32 references

  3. Denitrification Rates in a Midwestern Stream Containing High Nitrate: In Situ Assessment Using Tracers in Dome-Shaped Incubation Chambers

    NASA Astrophysics Data System (ADS)

    Smith, R. L.; Böhlke, J. K.; Repert, D. A.; Hart, C. P.

    2005-05-01

    The extent to which in-stream processes alter or remove nutrient loads in agriculturally-impacted streams is critically important to the function of a watershed and the delivery of those loads to coastal waters. Accurate assessment and characterization of key biogeochemical processes, such as nitrification and denitrification, are needed for establishing links between land use and watershed response and for developing predictive tools for agricultural management practices. In this study, patch-scale rates of in-stream benthic processes were determined within a second order stream reach (Sugar Creek, IN) dominated by drainage from tiled, row-crop fields. Rates of denitrification, nitrification, and net oxygen production/consumption were quantified using open-bottomed incubation chambers (0.6 m diam. acrylic hemispheres inserted 5-10 cm into the stream-channel sediment) that were fitted with water sampling/mixing ports, a volume compensation bladder, and pore-water piezometers. Incubations were conducted by injecting tracers (NaBr as a conservative tracer, along with 15N-enriched nitrate, nitrite or ammonium) into the chambers and collecting samples at 1-5 hr intervals for up to 48 hrs. Also assessed were in situ responses to increased nitrate concentrations, light vs. dark incubations, rates in various sediment types, and companion incubations during a reach-scale, in-stream tracer test with 15N-enriched nitrate. Overall, chamber denitrification rates ranged from about 25 to 155 μmol N m-2 hr-1 for nitrate concentrations from 90 to 1300 μM and were in general agreement with modeled rates from the reach-scale test. Increased nitrate concentrations resulted in increased denitrification rates, increased nitrite and nitrous oxide fluxes, and decreased methane fluxes. Oxygen consumption rates and nitrate loss rates based solely on concentration changes were much more variable than denitrification rates based on the isotope tracer results. Measured rates of

  4. Acetate concentrations and oxidation in salt marsh sediments

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Acetate concentrations and rates of acetate oxidation and sulfate reduction were measured in S. alterniflora sediments in New Hampshire and Massachusetts. Pore water extracted from cores by squeezing or centrifugation contained in greater than 0.1 mM acetate and, in some instances, greater than 1.0 mM. Pore water sampled nondestructively contained much less acetate, often less than 0.01 mM. Acetate was associated with roots, and concentrations varied with changes in plant physiology. Acetate turnover was very low whether whole core or slurry incubations were used. Radiotracers injected directly into soils yielded rates of sulfate reduction and acetate oxidation not significantly different from core incubation techniques. Regardless of incubation method, acetate oxidation did not account for a substantial percentage of sulfate reduction. These results differ markedly from data for unvegetated coastal sediments where acetate levels are low, oxidation rate constants are high, and acetate oxication rates greatly exceed rates of sulfate reduction. The discrepancy between rates of acetate oxidation and sulfate reduction in these marsh soils may be due either to the utilization of substrates other than acetate by sulfate reducers or artifacts associated with measurements of organic utilization by rhizosphere bacteria. Care must be taken when interpreting data from salt marsh sediments since the release of material from roots during coring may affect the concentrations of certain compounds as well as influencing results obtained when sediment incubations are employed.

  5. BACTERIAL METHYLMERCURY DEGRADATION IN FLORIDA EVERGLADES PEAT SEDIMENT

    EPA Science Inventory

    Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently <=0.1 d-1 and decreased ...

  6. Comparative anatomy of internal incubational sacs in cupuladriid bryozoans and the evolution of brooding in free-living cheilostomes.

    PubMed

    Ostrovsky, Andrew N; O'Dea, Aaron; Rodríguez, Felix

    2009-12-01

    Numerous gross morphological attributes are shared among unrelated free-living bryozoans revealing convergent evolution associated with functional demands of living on soft sediments. Here, we show that the reproductive structures across free-living groups evolved convergently. The most prominent convergent traits are the collective reduction of external brood chambers (ovicells) and the acquisition of internal brooding. Anatomical studies of four species from the cheilostome genera Cupuladria and Discoporella (Cupuladriidae) show that these species incubate their embryos in internal brooding sacs located in the coelom of the maternal nonpolymorphic autozooids. This sac consists of a main chamber and a narrow neck communicating to the vestibulum. The distal wall of the vestibulum possesses a cuticular thickening, which may further isolate the brood cavity. The presence of this character in all four species strongly supports grouping Cupuladria and Discoporella in one taxon. Further evidence suggests that the Cupuladriidae may be nested within the Calloporidae. Based on the structure of brooding organs, two scenarios are proposed to explain the evolution of the internal brooding in cupuladriids. The evolution of brood chambers and their origin in other free-living cheilostomes is discussed. Unlike the vast majority of Neocheilostomina, almost all free-living cheilostomes possess nonprominent chambers for embryonic incubation, either endozooidal and immersed ovicells or internal brooding sacs, supporting the idea that internal embryonic incubation is derived. We speculate that prominent skeletal brood chambers are disadvantageous to a free-living mode of life that demands easy movement through sediment in instable sea-floor settings. (c) 2009 Wiley-Liss, Inc.

  7. Effects of high CO2 level during early incubation and late incubation in ovo dexamethasone injection on perinatal embryonic parameters and post-hatch growth of broilers.

    PubMed

    Willemsen, H; Tona, K; Bruggeman, V; Onagbesan, O; Decuypere, E

    2008-03-01

    1. A total of 1200 Cobb broiler breeder eggs were incubated under either standard conditions (C group) or high CO(2) levels (CO(2) group) during the first 10 d of incubation. The CO(2) level of the CO(2) incubator was attained gradually by a natural build-up of CO(2) due to air-tight closure of the incubator. From d 10 of incubation onwards, all eggs were incubated under standard incubation conditions. At d 18 of incubation, the eggs of both incubation groups (CO(2) and C group) were either injected with water-soluble dexamethasone (DEXA group) or with saline (0.9% NaCl; saline group) or were not injected (control). 2. Body weights, plasma hormonal concentrations (T(3), T(4) and corticosteroid) and glucose concentrations were measured regularly during the perinatal (at IP, internal pipping) and post-hatch period (at 1, 2, 4 and 6 weeks post-hatch). Additionally, hatchability and pattern of embryonic mortality were determined after hatch. 3. The results showed that high CO(2) levels during the first 10 d of incubation or dexamethasone injection at d 18 of incubation decreased embryo mortality, mainly because of a reduction in embryo malpositioning. However, a combination of a CO(2) incubation and a dexamethasone injection led to an increase in embryo mortality and therefore a decrease in hatchability. 4. Although dexamethasone injection at embryonic d 18 decreased body weight in the second week of the rearing period and CO(2) incubation increased body weight during the first 2 weeks of the rearing period, no consistent effect of both the incubation and injection treatments on body weight at slaughter age was observed.

  8. The effect of ambient temperature, habitat quality and individual age on incubation behaviour and incubation feeding in a socially monogamous songbird.

    PubMed

    Amininasab, Seyed Mehdi; Kingma, Sjouke A; Birker, Martje; Hildenbrandt, Hanno; Komdeur, Jan

    Incubation is an important aspect of avian life history. The behaviour is energetically costly, and investment in incubation strategies within species, like female nest attentiveness and the feeding by the non-incubating partner during incubation, can therefore vary depending on environmental and individual characteristics. However, little is known about the combined effect of these characteristics. We investigated the importance of ambient temperature, habitat quality, and bird age on female incubation behaviour and male feeding of the incubating female (incubation feeding) in blue tits Cyanistes caeruleus, a socially monogamous songbird. An increase in ambient temperature resulted in a higher nest temperature, and this enabled females to increase the time off the nest for self-maintenance activities. Probably as a consequence of this, an increase in ambient temperature was associated with fewer incubation feedings by the male. Moreover, in areas with more food available (more deciduous trees), females had shorter incubation recesses and males fed females less often. Additionally, males fed young females more, presumably to increase such females' investment in their eggs, which were colder on average (despite the length of recesses and female nest attentiveness being independent of female age). Male age did not affect incubation feeding rate. In conclusion, the patterns of incubation behaviour were related to both environmental and individual characteristics, and male incubation feeding was adjusted to females' need for food according these characteristics, which can facilitate new insights to the study of avian incubation energetics. Parents often invest a substantial amount of energy in raising offspring. How much they do so depends on several environmental factors and on the extent they cooperate to raise the offspring. In birds, males can feed incubating females, which may allow females to stay longer on the nest, which, in turn, may ultimately improve

  9. Mineralization Of PAHs In Coal-Tar Impacted Aquifer Sediments And Associated Microbial Community Structure Investigated With FISH

    EPA Science Inventory

    The microbial community structure and mineralization of polycyclic aromatic hydrocarbons (PAHs) in a coal-tar contaminated aquifer were investigated spatially using fluorescence in situ hybridization (FISH) and in laboratory-scale incubations of the aquifer sediments. DAPI-detect...

  10. Mineralization Of PAHs In Coal-Tar Impacted Aquifer Sediments And Associated Microbial Community Structure Investigated With FISH

    EPA Science Inventory

    The microbial community structure and mineralization of polycyclic aromatic hydrocarbons (PAHs) in a coal-tar contaminated aquifer were investigated spatially using fluorescence in situ hybridization (FISH) and in laboratory-scale incubations of the aquifer sediments. DAPI-detect...

  11. Low-power hybrid wireless network for monitoring infant incubators.

    PubMed

    Shin, D I; Shin, K H; Kim, I K; Park, K S; Lee, T S; Kim, S I; Lim, K S; Huh, S J

    2005-10-01

    We have created a pilot wireless network for the convenient monitoring of temperature and humidity of infant incubators. This system combines infrared and radio frequency (RF) communication in order to minimize the power consumption of slave devices, and we therefore call it a hybrid wireless network. The slave module installed in the infant incubator receives the calling signal from the host with an infrared receiver, and sends temperature and humidity data to the host with an RF transmitter. The power consumption of the host system is not critical, and hence it uses the maximum power of infrared transmission and continuously operating RF receiver. In our test implementation, we included four slave devices. The PC calls each slave device every second and then waits for 6 s, resulting in a total scan period of 10 s. Slave devices receive the calling signals and transmit three data values (temperature, moisture, and skin temperature); their power demand is 1 mW, and can run for about 1000 h on four AA-size nickel-hydride batteries.

  12. Fine sediment affects on survival to emergence of robust redhorse

    USGS Publications Warehouse

    Jennings, C.A.; Dilts, E.W.; Shelton, J.L.; Peterson, Ronald C.

    2009-01-01

    Robust redhorse (Moxostoma robustum) is a rare riverine sucker for which life history information is scarce. Spawning occurs over loose gravel substrate and eggs and larvae may be adversely affected by fine sediments among the gravel. A 2-year study was conducted to determine the threshold at which fine sediments are detrimental to successful egg incubation and larval emergence. Year 1 gravel treatments contained 0, 25, 50, and 75% fine sediments. Mean survival during Year 1 ranged from 63.5% in the 0% fine sediment treatment to 0% in the 75% fine sediment treatment. The results also indicated an adverse affect threshold between 0 and 25% fine sediment. Year 2 gravel treatments contained 0, 5, 10, 15, 20, and 25% fine sediments. Mean survival during Year 2 ranged from 69.8% in the 0% treatment to 9.1% in the 25% treatment. Year 2 results also identified the 15% fine sediment treatment as the threshold at which survival began to decline. Substrates at one known spawning area used by robust redhorse typically contain 25 to 50% fine sediment, but the spawning act cleans some fines from the egg pocket. Whether the "cleaning" that results from the spawning act reduces the fines sufficiently to avoid adverse effects is unknown. According to our results, survival rates of robust redhorse eggs and larvae are predicted to be about 8.0% or less when fine sediment is >25%. ?? US Government 2009.

  13. ARSENIC MOBILIZATION FROM SEDIMENTS IN MICROCOSMS UNDER SULFATE REDUCTION

    PubMed Central

    Sun, Jing; Quicksall, Andrew N.; Chillrud, Steven N.; Mailloux, Brian J.; Bostick, Benjamin C.

    2016-01-01

    Arsenic is often assumed to be immobile in sulfidic environments. Here, laboratory-scale microcosms were conducted to investigate whether microbial sulfate reduction could control dissolved arsenic concentrations sufficiently for use in groundwater remediation. Sediments from the Vineland Superfund site and the Coeur d'Alene mining district were amended with different combination of lactate and sulfate and incubated for 30 to 40 days. In general, sulfate reduction in Vineland sediments resulted in transient and incomplete arsenic removal, or arsenic release from sediments. Sulfate reduction in the Coeur d'Alene sediments was more effective at removing arsenic from solution than the Vineland sediments, probably by arsenic substitution and adsorption within iron sulfides. X-ray absorption spectroscopy indicated that the Vineland sediments initially contained abundant reactive ferrihydrite, and underwent extensive sulfur cycling during incubation. As a result, arsenic in the Vineland sediments could not be effectively converted to immobile arsenic-bearing sulfides, but instead a part of the arsenic was probably converted to soluble thioarsenates. These results suggest that coupling between the iron and sulfur redox cycles must be fully understood for in situ arsenic immobilization by sulfate reduction to be successful. PMID:27037658

  14. Arsenic mobilization from sediments in microcosms under sulfate reduction.

    PubMed

    Sun, Jing; Quicksall, Andrew N; Chillrud, Steven N; Mailloux, Brian J; Bostick, Benjamin C

    2016-06-01

    Arsenic is often assumed to be immobile in sulfidic environments. Here, laboratory-scale microcosms were conducted to investigate whether microbial sulfate reduction could control dissolved arsenic concentrations sufficiently for use in groundwater remediation. Sediments from the Vineland Superfund site and the Coeur d'Alene mining district were amended with different combination of lactate and sulfate and incubated for 30-40 days. In general, sulfate reduction in Vineland sediments resulted in transient and incomplete arsenic removal, or arsenic release from sediments. Sulfate reduction in the Coeur d'Alene sediments was more effective at removing arsenic from solution than the Vineland sediments, probably by arsenic substitution and adsorption within iron sulfides. X-ray absorption spectroscopy indicated that the Vineland sediments initially contained abundant reactive ferrihydrite, and underwent extensive sulfur cycling during incubation. As a result, arsenic in the Vineland sediments could not be effectively converted to immobile arsenic-bearing sulfides, but instead a part of the arsenic was probably converted to soluble thioarsenates. These results suggest that coupling between the iron and sulfur redox cycles must be fully understood for in situ arsenic immobilization by sulfate reduction to be successful.

  15. Vertical activity distribution of dissimilatory nitrate reduction in coastal marine sediments

    NASA Astrophysics Data System (ADS)

    Behrendt, A.; de Beer, D.; Stief, P.

    2013-05-01

    The relative importance of two dissimilatory nitrate reduction pathways, denitrification (DEN) and dissimilatory nitrate reduction to ammonium (DNRA), was investigated in intact sediment cores from five different coastal marine field sites. The vertical distribution of DEN activity was examined using the acetylene inhibition technique combined with N2O microsensor measurements, whereas NH4+ production via DNRA was measured with a recently developed gel probe-stable isotope technique. At all field sites, dissimilatory nitrate reduction was clearly dominated by DEN (> 59% of the total NO3- reduced) rather than by DNRA, irrespective of the sedimentary inventories of electron donors such as organic carbon, sulfide, and iron. Ammonium production via DNRA (8.9% of the total NO3- reduced) was exclusively found at one site with very high concentrations of total sulfide and NH4+ in the layer of NO3- reduction and below. Sediment from two field sites, one with and one without DNRA activity in the core incubations, was also used for slurry incubations. Now, in both sediments high DNRA activity was detected accounting for 37-77% of the total NO3- reduced. These contradictory results can be explained by enhanced NO3- availability for DNRA bacteria in the sediment slurries compared to the core-incubated sediments. It can be argued that the gel probe technique gives more realistic estimates of DNRA activity in diffusion-dominated sediments, while slurry incubations are more suitable for advection-dominated sediments.

  16. Striped Bass, morone saxatilis, egg incubation in large volume jars

    USGS Publications Warehouse

    Harper, C.J.; Wrege, B.M.; Jeffery, Isely J.

    2010-01-01

    The standard McDonald jar was compared with a large volume jar for striped bass, Morone saxatilis, egg incubation. The McDonald jar measured 16 cm in diameter by 45 cm in height and had a volume of 6 L. The experimental jar measured 0.4 m in diameter by 1.3 m in height and had a volume of 200 L. The hypothesis is that there is no difference in percent survival of fry hatched in experimental jars compared with McDonald jars. Striped bass brood fish were collected from the Coosa River and spawned using the dry spawn method of fertilization. Four McDonald jars were stocked with approximately 150 g of eggs each. Post-hatch survival was estimated at 48, 96, and 144 h. Stocking rates resulted in an average egg loading rate (??1 SE) in McDonald jars of 21.9 ?? 0.03 eggs/mL and in experimental jars of 10.9 ?? 0.57 eggs/mL. The major finding of this study was that average fry survival was 37.3 ?? 4.49% for McDonald jars and 34.2 ?? 3.80% for experimental jars. Although survival in experimental jars was slightly less than in McDonald jars, the effect of container volume on survival to 48 h (F = 6.57; df = 1,5; P > 0.05), 96 h (F = 0.02; df = 1, 4; P > 0.89), and 144 h (F = 3.50; df = 1, 4; P > 0.13) was not statistically significant. Mean survival between replicates ranged from 14.7 to 60.1% in McDonald jars and from 10.1 to 54.4% in experimental jars. No effect of initial stocking rate on survival (t = 0.06; df = 10; P > 0.95) was detected. Experimental jars allowed for incubation of a greater number of eggs in less than half the floor space of McDonald jars. As hatchery production is often limited by space or water supply, experimental jars offer an alternative to extending spawning activities, thereby reducing labor and operations cost. As survival was similar to McDonald jars, the experimental jar is suitable for striped bass egg incubation. ?? Copyright by the World Aquaculture Society 2010.

  17. Atrazine degradation by bioaugmented sediment from constructed wetlands.

    PubMed

    Runes, H B; Jenkins, J J; Bottomley, P J

    2001-10-01

    The potential to establish pesticide biodegradation in constructed wetland sediment was investigated. Under microcosm conditions, bioaugmentation of sediment with small quantities of an atrazine spill-site soil (1:100 w/w) resulted in the mineralization of 25-30% of 14C ethyl atrazine (1-10 microg g(-1) sediment) as 14CO2 under both unsaturated and water-saturated conditions; atrazine and its common metabolites were almost undetectable after 30 days incubation. By comparison, unbioaugmented sediment supplemented with organic amendments (cellulose or cattail leaves) mineralized only 2-3% of 14C ethyl atrazine, and extractable atrazine and its common metabolites comprised approximately 70% of the original application. The population density of atrazine-degrading microorganisms in unbioaugmented sediment was increased from approximately 10(2)/g to 10(4)/g by bioaugmentation (1:100 w/w), and increased by another 60-fold (6.0x10(5) g(-1)) after incubation with 10 microg g(-1) of atrazine. A high population of atrazine degraders (approximately 10(6) g(-1)) and enhanced rates of atrazine mineralization also developed in bioaugmented sediment after incubation in flooded mesocosms planted with cattails (Typha latifolia) and supplemented with atrazine (3.2 mg l(-1), 1 microg g(-1) sediment). In the absence of atrazine, neither the population of atrazine degraders, nor the atrazine mineralizing potential of bioaugmented sediment increased, regardless of the presence or absence of cattails. Bioaugmentation might be a simple method to promote pesticide degradation in nursery run-off channeled through constructed wetlands, if persistence of degraders in the absence of pesticide is not a serious constraint.

  18. Microbial Formation of Ethane in Anoxic Estuarine Sediments

    PubMed Central

    Oremland, Ronald S.

    1981-01-01

    Estuarine sediment slurries produced methane and traces of ethane when incubated under hydrogen. Formation of methane occurred over a broad temperature range with an optimum above 65°C. Ethane formation had a temperature optimum at 40°C. Formation of these two gases was inhibited by air, autoclaving, incubation at 4 and 80°C, and by the methanogenic inhibitor, 2-bromoethanesulfonic acid. Ethane production was stimulated by addition of ethylthioethanesulfonic acid, and production from ethylthioethanesulfonic acid was blocked by 2-bromoethanesulfonic acid. A highly purified enrichment culture of a methanogenic bacterium obtained from sediments produced traces of ethane from ethylthioethanesulfonic acid. These results indicate that the small quantities of ethane found in anaerobic sediments can be formed by certain methanogenic bacteria. PMID:16345805

  19. Microbial formation of ethane in anoxic estuarine sediments

    USGS Publications Warehouse

    Oremland, Ronald S.

    1981-01-01

    Estuarine sediment slurries produced methane and traces of ethane when incubated under hydrogen. Formation of methane occurred over a broad temperature range with an optimum above 65°C. Ethane formation had a temperature optimum at 40°C. Formation of these two gases was inhibited by air, autoclaving, incubation at 4 and 80°C, and by the methanogenic inhibitor, 2-bromoethanesulfonic acid. Ethane production was stimulated by addition of ethylthioethanesulfonic acid, and production from ethylthioethanesulfonic acid was blocked by 2-bromoethanesulfonic acid. A highly purified enrichment culture of a methanogenic bacterium obtained from sediments produced traces of ethane from ethylthioethanesulfonic acid. These results indicate that the small quantities of ethane found in anaerobic sediments can be formed by certain methanogenic bacteria.

  20. [Genetical analysis on cross incubation of Beauveria bassiana].

    PubMed

    Wang, C; Ding, D; Wang, S; Li, Z

    2000-10-01

    Heterokaryon of Beauveria bassiana was formed during the cross incubation of two vegetative compatible strains with genetic markers of actidione resistance and 34 degrees C tolerance. The chromosome(s) or its fragment successive losses, recombination and segreation led to haploidization during the conidia formation period. After at least 4 generations of parasexual cycle, the genetic character of heterokayon could get to relative stable. Genetic marker and RAPD analysis indicated that the combinants showed the phenomenon of preferential selection of one parental type by unrandom chromosome lossing and the gene of the other parental strain was suppressed or lost completely. Different culture medium, in vivo or in vitro, and different mixture ratio of original strain spores could affect parasexual process and then the preferential selection. The results also demonstrated the heterosis effect of cross culture.

  1. Effects of methysergide on platelets incubated with reserpine

    PubMed Central

    Cumings, J. N.; Hilton, Barbara P.

    1971-01-01

    1. Platelets were incubated with methysergide and related compounds (2-bromo lysergic acid (BOL), ergotamine and methyl ergotamine) together with reserpine. 2. Methysergide inhibited the normal aggregation response of platelets to 5-hydroxytryptamine (5HT) but did not affect the reduction in the 5HT content caused by reserpine, or the uptake of 5HT by the platelets. 3. BOL, ergotamine and methyl ergotamine behaved similarly. Methysergide had greater anti5HT potency than BOL, and methyl ergotamine had greater potency than ergotamine. 4. The use of platelets as a model for synaptic preparations is discussed. 5. The role of 5HT receptor sites on the platelet membrane and the significance of the results for migraine patients treated with methysergide are discussed. PMID:5116036

  2. Habitat quality of historic Snake River fall Chinook salmon spawning locations and implications for incubation survival: part 1, substrate quality

    SciTech Connect

    Hanrahan, Timothy P.; Geist, David R.; Arntzen, Evan V.

    2005-07-01

    We evaluated substrate quality at two historic fall Chinook salmon (Oncorhynchus tshawytscha) spawning sites in the Snake River, Idaho, USA. The primary objective of this evaluation was to measure sediment permeability within these areas to determine the potential quality of the habitat in the event that anadromous salmonids are reintroduced to the upper Snake River. Riverbed sediments within the two sites in the upper Snake River were sampled using freeze cores and hydraulic slug tests. Sediment grain size distributions at both sites were typical of gravel-bed rivers with the surface layer coarser than the underlying substrate, suggesting the riverbed surface was armored. Despite the armored nature of the bed, the size of the largest material present on the riverbed surface was well within the size limit of material capable of being excavated by spawning fall Chinook salmon. The percentage of fines was low, suggesting good quality substrate for incubating salmon embryos. Geometric mean particle sizes found in this study compared to a 55% to 80% survival to emergence based on literature values. Hydraulic slug tests showed moderate to high hydraulic conductivity and were comparable to values from current fall Chinook salmon spawning areas in the Hells Canyon Reach of the Snake River and the Hanford Reach of the Columbia River. Predicted estimates of mean egg survival at both sites (48% and 74%) equaled or exceeded estimates from fall Chinook salmon spawning areas in the Hells Canyon Reach and the Hanford Reach.

  3. Prions in milk from ewes incubating natural scrapie.

    PubMed

    Lacroux, Caroline; Simon, Stéphanie; Benestad, Sylvie L; Maillet, Séverine; Mathey, Jacinthe; Lugan, Séverine; Corbière, Fabien; Cassard, Hervé; Costes, Pierrette; Bergonier, Dominique; Weisbecker, Jean-Louis; Moldal, Torffin; Simmons, Hugh; Lantier, Frederic; Feraudet-Tarisse, Cécile; Morel, Nathalie; Schelcher, François; Grassi, Jacques; Andréoletti, Olivier

    2008-12-01

    Since prion infectivity had never been reported in milk, dairy products originating from transmissible spongiform encephalopathy (TSE)-affected ruminant flocks currently enter unrestricted into the animal and human food chain. However, a recently published study brought the first evidence of the presence of prions in mammary secretions from scrapie-affected ewes. Here we report the detection of consistent levels of infectivity in colostrum and milk from sheep incubating natural scrapie, several months prior to clinical onset. Additionally, abnormal PrP was detected, by immunohistochemistry and PET blot, in lacteal ducts and mammary acini. This PrP(Sc) accumulation was detected only in ewes harbouring mammary ectopic lymphoid follicles that developed consequent to Maedi lentivirus infection. However, bioassay revealed that prion infectivity was present in milk and colostrum, not only from ewes with such lympho-proliferative chronic mastitis, but also from those displaying lesion-free mammary glands. In milk and colostrum, infectivity could be recovered in the cellular, cream, and casein-whey fractions. In our samples, using a Tg 338 mouse model, the highest per ml infectious titre measured was found to be equivalent to that contained in 6 microg of a posterior brain stem from a terminally scrapie-affected ewe. These findings indicate that both colostrum and milk from small ruminants incubating TSE could contribute to the animal TSE transmission process, either directly or through the presence of milk-derived material in animal feedstuffs. It also raises some concern with regard to the risk to humans of TSE exposure associated with milk products from ovine and other TSE-susceptible dairy species.

  4. Incubator weaning in preterm infants and associated practice variation.

    PubMed

    Schneiderman, R; Kirkby, S; Turenne, W; Greenspan, J

    2009-08-01

    To evaluate the relationship of weight of preterm infants when first placed into an open crib with days to full oral feedings, growth velocity and length of stay (LOS), and to identify unwarranted variation in incubator weaning after adjusting for severity indices. A retrospective study using the ParadigmHealth neonatal database from 2003 to 2006 reviewed incubator weaning to an open crib in appropriate-for-gestational-age (AGA) infants from 22 to weeks gestation. Primary outcome measurements included days to full oral (PO) feeding, weight gain from open crib to discharge and length of stay. Models were severity adjusted. To understand hospital practice variation, we also used a regression model to estimate the weight at open crib for the top 10 volume hospitals. In all 2908 infants met the inclusion criteria for the study. Their mean weight at open crib was 1850 g. On average every additional 100 g an infant weighed at the open crib was associated with increased time to full PO feeding by 0.8 days, decreased weight gained per day by 1 gram and increased LOS by 0.9 days. For the top 10 volume hospitals, severity variables alone accounted for 9% of the variation in weight at open crib, whereas the hospital in which the baby was treated accounted for an additional 19% of the variation. Even after controlling for severity, significant practice variation exists in weaning to an open crib, leading to potential delays in achieving full-volume oral feeds, decreased growth velocity and prolonged LOS.

  5. Biparental incubation-scheduling: no experimental evidence for major energetic constraints

    PubMed Central

    Cresswell, Will; Rutten, Anne L.; Valcu, Mihai; Kempenaers, Bart

    2015-01-01

    Incubation is energetically demanding, but it is debated whether these demands constrain incubation-scheduling (i.e., the length, constancy, and timing of incubation bouts) in cases where both parents incubate. Using 2 methods, we experimentally reduced the energetic demands of incubation in the semipalmated sandpiper, a biparental shorebird breeding in the harsh conditions of the high Arctic. First, we decreased the demands of incubation for 1 parent only by exchanging 1 of the 4 eggs for an artificial egg that heated up when the focal bird incubated. Second, we reanalyzed the data from the only published experimental study that has explicitly tested energetic constraints on incubation-scheduling in a biparentally incubating species (Cresswell et al. 2003). In this experiment, the energetic demands of incubation were decreased for both parents by insulating the nest cup. We expected that the treated birds, in both experiments, would change the length of their incubation bouts, if biparental incubation-scheduling is energetically constrained. However, we found no evidence that heating or insulation of the nest affected the length of incubation bouts: the combined effect of both experiments was an increase in bout length of 3.6min (95% CI: −33 to 40), which is equivalent to a 0.5% increase in the length of the average incubation bout. These results demonstrate that the observed biparental incubation-scheduling in semipalmated sandpipers is not primarily driven by energetic constraints and therefore by the state of the incubating bird, implying that we still do not understand the factors driving biparental incubation-scheduling. PMID:25713473

  6. Warm is better: incubation temperature influences apparent survival and recruitment of wood ducks (Aix sponsa).

    PubMed

    Hepp, Gary R; Kennamer, Robert A

    2012-01-01

    Avian parents that physically incubate their eggs must balance demands of self-maintenance with providing the proper thermal environment for egg development. Low incubation temperatures can lengthen the incubation period and produce changes in neonate phenotype that may influence subsequent survival and reproduction. We artificially incubated wood duck (Aix sponsa) eggs at three temperature regimes (low, 35.0; mid, 35.9; and high, 37.3°C) that are within the range of temperatures of naturally-incubated nests. We tested the effect of incubation temperature on duckling body composition, fledging success, the probability that females were recruited to the breeding population, and their subsequent reproductive success. Incubation period was inversely related to incubation temperature, and body mass and lipid mass for newly-hatched ducklings incubated at the lowest temperature were lower than for ducklings produced at higher temperatures. In 2008, ducklings (n = 412) were individually marked and broods (n = 38) containing ducklings from each temperature treatment were placed with wild foster mothers within 24 hrs of hatching. Ducklings incubated at the lowest temperature were less likely to fledge from nest sites than ducklings incubated at the higher temperatures. We recaptured female ducklings as adults when they were either prospecting for nest sites (n = 171; 2009-2011) or nesting (n = 527; 2009-2012). Female ducklings incubated at the lowest temperature were less likely to survive and be recruited to the breeding population than females incubated at higher temperatures. Reproductive success of surviving females also was greater for females that had been incubated at warmer temperatures. To our knowledge, this is the first avian study to link developmental conditions experienced by neonates during incubation with their survival and recruitment to the breeding population, and subsequent reproductive success. These results advance our understanding of

  7. Warm Is Better: Incubation Temperature Influences Apparent Survival and Recruitment of Wood Ducks (Aix sponsa)

    PubMed Central

    Hepp, Gary R.; Kennamer, Robert A.

    2012-01-01

    Avian parents that physically incubate their eggs must balance demands of self-maintenance with providing the proper thermal environment for egg development. Low incubation temperatures can lengthen the incubation period and produce changes in neonate phenotype that may influence subsequent survival and reproduction. We artificially incubated wood duck (Aix sponsa) eggs at three temperature regimes (low, 35.0; mid, 35.9; and high, 37.3°C) that are within the range of temperatures of naturally-incubated nests. We tested the effect of incubation temperature on duckling body composition, fledging success, the probability that females were recruited to the breeding population, and their subsequent reproductive success. Incubation period was inversely related to incubation temperature, and body mass and lipid mass for newly-hatched ducklings incubated at the lowest temperature were lower than for ducklings produced at higher temperatures. In 2008, ducklings (n = 412) were individually marked and broods (n = 38) containing ducklings from each temperature treatment were placed with wild foster mothers within 24 hrs of hatching. Ducklings incubated at the lowest temperature were less likely to fledge from nest sites than ducklings incubated at the higher temperatures. We recaptured female ducklings as adults when they were either prospecting for nest sites (n = 171; 2009–2011) or nesting (n = 527; 2009–2012). Female ducklings incubated at the lowest temperature were less likely to survive and be recruited to the breeding population than females incubated at higher temperatures. Reproductive success of surviving females also was greater for females that had been incubated at warmer temperatures. To our knowledge, this is the first avian study to link developmental conditions experienced by neonates during incubation with their survival and recruitment to the breeding population, and subsequent reproductive success. These results advance our

  8. Biparental incubation-scheduling: no experimental evidence for major energetic constraints.

    PubMed

    Bulla, Martin; Cresswell, Will; Rutten, Anne L; Valcu, Mihai; Kempenaers, Bart

    2015-01-01

    Incubation is energetically demanding, but it is debated whether these demands constrain incubation-scheduling (i.e., the length, constancy, and timing of incubation bouts) in cases where both parents incubate. Using 2 methods, we experimentally reduced the energetic demands of incubation in the semipalmated sandpiper, a biparental shorebird breeding in the harsh conditions of the high Arctic. First, we decreased the demands of incubation for 1 parent only by exchanging 1 of the 4 eggs for an artificial egg that heated up when the focal bird incubated. Second, we reanalyzed the data from the only published experimental study that has explicitly tested energetic constraints on incubation-scheduling in a biparentally incubating species (Cresswell et al. 2003). In this experiment, the energetic demands of incubation were decreased for both parents by insulating the nest cup. We expected that the treated birds, in both experiments, would change the length of their incubation bouts, if biparental incubation-scheduling is energetically constrained. However, we found no evidence that heating or insulation of the nest affected the length of incubation bouts: the combined effect of both experiments was an increase in bout length of 3.6min (95% CI: -33 to 40), which is equivalent to a 0.5% increase in the length of the average incubation bout. These results demonstrate that the observed biparental incubation-scheduling in semipalmated sandpipers is not primarily driven by energetic constraints and therefore by the state of the incubating bird, implying that we still do not understand the factors driving biparental incubation-scheduling.

  9. Application of Dredged Materials and Steelmaking Slag as Basal Media to Restore and Create Seagrass Beds: Mesocosm and Core Incubation Experiments

    NASA Astrophysics Data System (ADS)

    Tsukasaki, A.; Suzumura, M.; Tsurushima, N.; Nakazato, T.; Huang, Y.; Tanimoto, T.; Yamada, N.; Nishijima, W.

    2016-02-01

    Seagrass beds stabilize bottom sediments, improve water quality and light conditions, enhance species diversity, and provide habitat complexity in coastal marine environments. Seagrass beds are now experiencing worldwide decline by rapid environmental changes. Possible options of seagrass bed restoration are civil engineering works including mounding to raise the bottom to elevations with suitable light for seagrass growth. Reuse or recycling of dredged materials (DM) and various industrial by-products including steelmaking slags is a beneficial option to restore and create seagrass beds. To evaluate the applicability of DM and dephosphorization slag (Slag) as basal media of seagrass beds, we carried out mesocosm experiments and core incubation experiments in a land-based flow-through seawater tank over a year. During the mesocosm experiment, no difference was found in growth of eelgrass (Zostera marina L.) and macrobenthic community structures between Slag-based sediments and sand-based control experiments, even though Slag-based sediments exhibited substantially higher pH than sand-based sediments. During the core incubation experiment, we investigated detailed variation and distributions of pH and nutrients, and diffusion fluxes of nutrients between the sediment/seawater interface. Though addition of Slag induced high pH up to 10.7 in deep layers (< 5 cm), the surface pH decreased rapidly within 10 days. Concentrations of dissolved inorganic nitrogen were comparable between Slag- and sand-based sediments, whereas dissolved phosphate concentration was substantially reduced by the addition of Slag. The low concentrations of phosphate was likely due to precipitation with calcium under high pH condition. Diffusion fluxes of nutrients from the cores were comparable with those reported in natural coastal systems. It was suggested that the mixture of Slag and DM is applicable as basal media for construction of artificial seagrass beds.

  10. Measuring the decomposition of organic carbon sequestered by salt marsh sediment

    NASA Astrophysics Data System (ADS)

    Light, T.; Mctigue, N.; Currin, C.

    2016-12-01

    As atmospheric carbon dioxide concentrations continue to rise, salt marshes are increasingly being recognized as a natural carbon sink, for large amounts of organic carbon are sequestered by salt marsh sediments. However, little is known regarding the fate of this "blue carbon" after salt marsh sediment is disturbed via erosion or lost due to sea level rise. This investigation explored novel methodologies for determining the lability of carbon sequestered by salt marsh sediment. Sediment cores were collected from a Spartina alterniflora-dominated marsh in Camp Lejeune, NC, and elemental analysis revealed that the upper 76 cm of sediment at the site contains a total carbon stock of 28.4 kg /m2. Sediment ranging from 251-545 years old, as determined through radiocarbon dating, was incubated under sub-aerial and aqueous conditions for 18 days and 25 days respectively. Carbon dioxide flux measurements revealed that shallower sediment organic matter decomposed more rapidly than deeper sediment in sub-aerial incubations, but decomposition was fairly slow in both treatments. No significant organic matter decomposition was observed in the aqueous incubations, as revealed by analyses of organic carbon remaining after the incubation period. The aqueous incubation included a treatment that had been "primed" with highly labile yeast extract, but no significant priming effect was observed over 25 days. While further investigation on the fate of this sediment carbon is needed, these preliminary findings indicate that salt marshes facilitate long-term carbon sequestration even after disturbances. This in turn supports the argument for mitigating anthropogenic carbon dioxide emissions through salt marsh restoration, and supports a policy of preserving and conserving coastal wetlands for this valuable ecosystem service.

  11. Populations of Methane-Producing Bacteria and In Vitro Methanogenesis in Salt Marsh and Estuarine Sediments

    PubMed Central

    Jones, William J.; Paynter, Malcolm J. B.

    1980-01-01

    Most probable numbers (MPNs) of methanogens in various salt marsh and estuarine sediments were determined with an anaerobic, habitat-simulating culture medium with 80% H2 plus 20% CO2 as substrate. Average MPNs for the short Spartina (SS) marsh sediments of Sapelo Island, Ga., were maximal at the 5- to 7-cm depth (1.2 × 107/g of dry sediment). Populations decreased to approximately 880/g of dry sediment at the 34- to 36-cm depth. There was no significant difference between summer and winter populations. In tall Spartina (TS) marsh sediments, average populations were maximal (1.2 × 106/g of dry sediment) in the upper 0- to 2-cm zone; populations from the 5- to 36-cm zones were similar (average of 9 × 104/g of dry sediment). Methanogenic populations for TS sediments of James Island Creek marsh, Charleston, S.C., were similar (average of 3 × 106/g of dry sediment) for all depths tested (0 to 22 cm), which was comparable to the trend observed for TS sediments at Sapelo Island, Ga. Sediment grab samples collected along a transect of James Island Creek and its adjacent Spartina marsh had MPNs that were approximately 20 times greater for the region of Spartina growth (average of 106/g of dry sediment) compared with the channel (approximately 5 × 104 methanogens per g of dry sediment). A similar trend was found at Pawley's Island marsh, S.C., but populations were approximately one order of magnitude lower. In vitro rates of methanogenesis with SS sediments incubated under 80% H2-20% CO2 showed that the 5- to 7-cm region exhibited maximal activity (51 nmol of CH4 g−1 h−1), which was greater than rates for sediments above and below this depth. SS sediment samples (5 to 7 cm) incubated under 100% N2 and supplemented with formate exhibited rates of methanogenesis similar to those generated by samples under 80% H2-20% CO2. Replacing the N2 atmosphere with H2 resulted in an eightfold decrease in the rate of methanogenesis. In vitro methanogenic activity by TS salt marsh

  12. Identifying indicators of reactivity for chemical reductants in sediments.

    PubMed

    Zhang, Huichun; Weber, Eric J

    2013-07-02

    To conduct site-specific exposure assessments for contaminants containing reducible functional groups, it is imperative to know the identity and reactivity of chemical reductants in natural sediments and to associate their reactivity with easily measurable sediment properties. For this purpose the reactivity, as defined by pseudofirst order reduction rate constants for p-cyanonitrobenzene (pCNB), was measured in twenty-one natural sediments of different origins that were incubated to attain both anoxic (less reducing) and anaerobic (microbially reducing) conditions. The reactivity of the anoxic sediments increased with pH and an increasing amount of Fe(II) added. A good electron balance between pCNB reduction and Fe(II) consumption was observed for anaerobic sediments of high solids loading (50 g/L), but not when solids loading was 5 g/L. Based on cluster and regression analysis, pCNB reactivity in the anaerobic sediments correlates strongly with aqueous Fe(II) concentrations for sediments with low organic carbon (OC) content (<4.2%), but with dissolved OC concentrations (DOC) for the sediments with high OC content (>6.4%). These observations indicate surface-associated Fe(II) and reduced DOC are the predominant reductants in the anaerobic sediments, and that aqueous Fe(II) and DOC will serve as readily measurable indicators of pCNB reactivity in these systems.

  13. Cable bacteria associated with long-distance electron transport in New England salt marsh sediment.

    PubMed

    Larsen, Steffen; Nielsen, Lars Peter; Schramm, Andreas

    2015-04-01

    Filamentous Desulfobulbaceae have been proposed as 'cable bacteria', which electrically couple sulfide oxidation and oxygen reduction in marine sediment and thereby create a centimetre-deep suboxic zone. We incubated New England salt marsh sediment and found long-distance electron transport across 6 mm and 16S rRNA genes identical to those of previously observed cable bacteria in Aarhus Bay sediment incubations. Cable bacteria density in sediment cores was quantified by fluorescence in situ hybridization. In contrast to the coastal, subtidal sediments with short-termed blooms of cable bacteria based on rapidly depleted iron sulfide pools, the salt marsh cable community was based on ongoing sulfate reduction and therefore probably more persistent. Previously observed seasonal correlation between Desulfobulbaceae dominance and extensive reduced sulfur oxidation in salt marshes suggest that cable bacteria at times may have an important role in situ.

  14. DEVELOPMENT OF A DELAYED-INCUBATION, MEMBRANE FILTER TEST FOR ENTEROCCI IN WATER.

    EPA Science Inventory

    A delayed-incubation procedure for assessing bacterial water quality is useful when sampling in remote locations. Although a delayed incubation test for coliforms is available, we are unaware of any published reports of delayed-incubation procedures for enterococci, an EPA recomm...

  15. The see-saw a vertical-lift incubator designed for channel catfish egg masses

    USDA-ARS?s Scientific Manuscript database

    Channel catfish egg masses are typically incubated in baskets that are suspended in water that is agitated with rotating or oscillating paddles. We designed and tested a new vertical-lift incubator (the “See-Saw”) to incubate channel catfish egg masses. Preliminary research in commercial hatcheries...

  16. 78 FR 61383 - Certain Thermal Support Devices For Infants, Infant Incubators, Infant Warmers, and Components...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-03

    ... COMMISSION Certain Thermal Support Devices For Infants, Infant Incubators, Infant Warmers, and Components... United States after importation of certain thermal support devices for infants, infant incubators, infant... certain thermal support devices for infants, infant incubators, infant warmers, and components thereof by...

  17. A study of knowledge supernetworks and network robustness in different business incubators

    NASA Astrophysics Data System (ADS)

    Zhang, Haihong; Wu, Wenqing; Zhao, Liming

    2016-04-01

    As the most important intangible resource of the new generation of business incubators, knowledge has been studied extensively, particularly with respect to how it spreads among incubating firms through knowledge networks. However, these homogeneous networks do not adequately describe the heterogeneity of incubating firms in different types of business incubators. To solve the problem of heterogeneity, the notion of a knowledge supernetwork has been used both to construct a knowledge interaction model among incubating firms and to distinguish social network relationships from knowledge network relationships. The process of knowledge interaction and network evolution can then be simulated with a few rules for incubating firms regarding knowledge innovation/absorption, social network connection, and entry and exit, among other aspects. Knowledge and networks have been used as performance indicators to evaluate the evolution of knowledge supernetworks. Moreover, we study the robustness of incubating firms' social networks by employing four types of attack strategies. Based on our simulation results, we conclude that there have been significant knowledge interaction and network evolution among incubating firms on a periodic basis and that both specialized and diversified business incubators have every advantage necessary in terms of both knowledge and networks to cultivate start-up companies. As far as network robustness is concerned, there is no obvious difference between the two types of business incubators with respect to the stability of their network structures, but specialized business incubators have stronger network communication abilities than diversified business incubators.

  18. Soil respiration is not limited by reductions in microbial biomass during long-term soil incubations

    USDA-ARS?s Scientific Manuscript database

    Declining rates of soil respiration are reliably observed during long-term laboratory incubations, but the cause is uncertain. We explored different controls on soil respiration during long-term soil incubations. Following a 707 day incubation (30 C) of soils from cultivated and forested plots at Ke...

  19. Partly versus Completely out of Your Mind: Effects of Incubation and Distraction on Resolving Fixation

    ERIC Educational Resources Information Center

    Kohn, Nicholas; Smith, Steven M.

    2009-01-01

    Incubation has long been proposed as a mechanism in creative problem solving (Wallas, 1926). A new trial-by-trial method for observing incubation effects was used to compare the forgetting fixation hypothesis with the conscious work hypothesis. Two experiments examined the effects of incubation on initially unsolved Remote Associates Test (RAT)…

  20. DEVELOPMENT OF A DELAYED-INCUBATION, MEMBRANE FILTER TEST FOR ENTEROCCI IN WATER.

    EPA Science Inventory

    A delayed-incubation procedure for assessing bacterial water quality is useful when sampling in remote locations. Although a delayed incubation test for coliforms is available, we are unaware of any published reports of delayed-incubation procedures for enterococci, an EPA recomm...

  1. Salinization Enhances Mobilization of Nutrients from Sediments to Streams

    NASA Astrophysics Data System (ADS)

    Haq, S.; Kaushal, S.; Hohman, S.; Coplin, J.; Duan, S.

    2015-12-01

    Many regions of the U.S. and elsewhere are experiencing increased salinization of freshwater due to the widespread application of road salts. Increased salinization has the potential to release stored nutrients from sediments, decrease biodiversity, and perturb water quality. We conducted laboratory experiments to investigate the potential effects of road salt (NaCl) on nutrient mobilization from sediments to stream water. Sediments and stream water were incubated from 2 urbanizing watersheds of the Chesapeake Bay in the Baltimore-Washington Metropolitan area. Stream sediment was incubated from 11 routinely monitored streams exhibiting a land use gradient within the Baltimore Ecosystem Study Long-Term Ecological Research (BES LTER) site and Anacostia River watershed. Our results indicate that salinization increased the release of soluble reactive phosphorus and total dissolved nitrogen at all sites. The release of dissolved organic carbon and dissolved inorganic carbon varied between sites, and these differential responses may be due to: stream sediment composition, organic matter content, and ambient water quality. The magnitude and frequency of road salt application may be amplified in the near future due to the interactive effects of climate variability and urbanization, and our research suggests this can have water quality and ecological implications for freshwater ecosystems. Further research is necessary to elucidate driving mechanisms of changes in sediment biogeochemical cycles in response to salinization and the temporal response of freshwater ecosystems.

  2. Fostering Entrepreneurship through Business Incubation: The Role and Prospects of Postsecondary Vocational-Technical Education. Report 1: Survey of Business Incubator Clients and Managers.

    ERIC Educational Resources Information Center

    Hernandez-Gantes, Victor M.; And Others

    A national survey examined the collective experiences of entrepreneurs, business incubator managers, and postsecondary institutions involved in educational and training strategies aimed at fostering entrepreneurship. The sample included incubators sponsored by universities (n=75), two-year colleges (n=25), and other sources (n=100). The survey…

  3. Laboratory-determined phosphorus flux from lake sediments as a measure of internal phosphorus loading.

    PubMed

    Ogdahl, Mary E; Steinman, Alan D; Weinert, Maggie E

    2014-03-06

    Eutrophication is a water quality issue in lakes worldwide, and there is a critical need to identify and control nutrient sources. Internal phosphorus (P) loading from lake sediments can account for a substantial portion of the total P load in eutrophic, and some mesotrophic, lakes. Laboratory determination of P release rates from sediment cores is one approach for determining the role of internal P loading and guiding management decisions. Two principal alternatives to experimental determination of sediment P release exist for estimating internal load: in situ measurements of changes in hypolimnetic P over time and P mass balance. The experimental approach using laboratory-based sediment incubations to quantify internal P load is a direct method, making it a valuable tool for lake management and restoration. Laboratory incubations of sediment cores can help determine the relative importance of internal vs. external P loads, as well as be used to answer a variety of lake management and research questions. We illustrate the use of sediment core incubations to assess the effectiveness of an aluminum sulfate (alum) treatment for reducing sediment P release. Other research questions that can be investigated using this approach include the effects of sediment resuspension and bioturbation on P release. The approach also has limitations. Assumptions must be made with respect to: extrapolating results from sediment cores to the entire lake; deciding over what time periods to measure nutrient release; and addressing possible core tube artifacts. A comprehensive dissolved oxygen monitoring strategy to assess temporal and spatial redox status in the lake provides greater confidence in annual P loads estimated from sediment core incubations.

  4. Laboratory-determined Phosphorus Flux from Lake Sediments as a Measure of Internal Phosphorus Loading

    PubMed Central

    Ogdahl, Mary E.; Steinman, Alan D.; Weinert, Maggie E.

    2014-01-01

    Eutrophication is a water quality issue in lakes worldwide, and there is a critical need to identify and control nutrient sources. Internal phosphorus (P) loading from lake sediments can account for a substantial portion of the total P load in eutrophic, and some mesotrophic, lakes. Laboratory determination of P release rates from sediment cores is one approach for determining the role of internal P loading and guiding management decisions. Two principal alternatives to experimental determination of sediment P release exist for estimating internal load: in situ measurements of changes in hypolimnetic P over time and P mass balance. The experimental approach using laboratory-based sediment incubations to quantify internal P load is a direct method, making it a valuable tool for lake management and restoration. Laboratory incubations of sediment cores can help determine the relative importance of internal vs. external P loads, as well as be used to answer a variety of lake management and research questions. We illustrate the use of sediment core incubations to assess the effectiveness of an aluminum sulfate (alum) treatment for reducing sediment P release. Other research questions that can be investigated using this approach include the effects of sediment resuspension and bioturbation on P release. The approach also has limitations. Assumptions must be made with respect to: extrapolating results from sediment cores to the entire lake; deciding over what time periods to measure nutrient release; and addressing possible core tube artifacts. A comprehensive dissolved oxygen monitoring strategy to assess temporal and spatial redox status in the lake provides greater confidence in annual P loads estimated from sediment core incubations. PMID:24637715

  5. Arsenic speciation in arsenic-rich Brazilian soils from gold mining sites under anaerobic incubation

    USGS Publications Warehouse

    De Mello, J. W. V.; Talbott, J.L.; Scott, J.; Roy, W.R.; Stucki, J.W.

    2007-01-01

    Background. Arsenic speciation in environmental samples is essential for studying toxicity, mobility and bio-transformation of As in aquatic and terrestrial environments. Although the inorganic species As(III) and As(V) have been considered dominant in soils and sediments, organisms are able to metabolize inorganic forms of arsenic into organo-arsenic compounds. Arsenosugars and methylated As compounds can be found in terrestrial organisms, but they generally occur only as minor constituents. We investigated the dynamics of arsenic species under anaerobic conditions in soils surrounding gold mining areas from Minas Gerais State, Brazil to elucidate the arsenic biogeochemical cycle and water contamination mechanisms. Methods. Surface soil samples were collected at those sites, namely Paracatu Formation, Banded Iron Formation and Riacho dos Machados Sequence, and incubated in CaCl2 2.5 mmol L-1 suspensions under anaerobic conditions for 1, 28, 56 and 112 days. After that, suspensions were centrifuged and supernatants analyzed for soluble As species by IC-ICPMS and HPLC-ICPMS. Results. Easily exchangeable As was mainly arsenite, except when reducible manganese was present. Arsenate was mainly responsible for the increase in soluble arsenic due to the reductive dissolution of either iron or manganese in samples from the Paracatu Formation and Riacho dos Machados Sequence. On the other hand, organic species of As dominated in samples from the Banded Iron Formation during anaerobic incubation. Discussion. Results are contrary to the expectation that, in anaerobic environments, As release due to the reductive dissolution of Fe is followed by As(V) reduction to As(III). The occurrence of organo-arsenic species was also found to be significant to the dynamics of soluble arsenic, mainly in soils from the Banded Iron Formation (BIF), under our experimental conditions. Conclusions. In general, As(V) and organic As were the dominant species in solution, which is surprising

  6. Influence of biochar amendments on marine sediment trace metal bioavailability

    NASA Astrophysics Data System (ADS)

    Gehrke, G. E.; Hsu-Kim, H.

    2014-12-01

    Biochar has become a desirable material for use in agricultural application to enhance soil quality and in-situ soil and sediment remediation to immobilize organic contaminants. We investigated the effects of biochar sediment amendments on the bioavailability of a suite of inorganic trace metals (Cr, Co, Ni, Cu, Zn, Pb) in contaminated sediments from multiple sites in Elizabeth River, VA. We incubated sediments in microcosms with a variety of water column redox and salinity conditions and compared sediments amended with two types of woody biochar to sediments amended with charcoal activated carbon and unamended sediments. We leached sediments in artificial gut fluid mimic of the benthic invertebrate Arenicola marina as a measure of bioavailability of the trace metals analyzed. In unamended anaerobic sediments, the gut fluid mimic leachable fraction of each trace metal is 1-4% of the total sediment concentration for each metal. Initial results indicate that in anaerobic microcosms, woody biochar sediment amendments (added to 5% dry wt) decrease the gut fluid mimic leachable fraction by 30-90% for all trace metals analyzed, and have comparable performance to charcoal activated carbon amendments. However, in microcosms without controlled redox conditions, woody biochar amendments increase the bioavailable fraction of Ni and Cu by up to 80%, while decreasing the bioavailable fraction of Co, Zn, and Pb by approximately 50%; charcoal activated carbon amendments decreased the bioavailability of all trace metals analyzed by approximately 20%. In microcosms without an overlying water column, biochar and activated carbon amendments had no significant effects on trace metal bioavailability. This research demonstrates that biochar can effectively decrease the bioavailability of trace metals in marine sediments, but its efficiency is metal-specific, and environmental conditions impact biochar performance.

  7. Sediment from Agricultural Constructed Wetland Immobilizes Soil Phosphorus.

    PubMed

    Laakso, Johanna; Uusitalo, Risto; Leppänen, Janette; Yli-Halla, Markku

    2017-03-01

    Phosphorus (P) losses from agricultural soils impair the quality of receiving surface waters by enhancing eutrophication. This study tested the potential of using sediment from agricultural constructed wetlands (CWs) to immobilize soil P using two soils differing in texture and soil test P (STP). A silty clay soil (SIC) with high STP (24 mg ammonium acetate-extractable P [P] L) and a sandy loam soil (SL) with excessive STP (210 mg P L) were incubated with increasing amounts of clayey CW sediment. The soil-sediment mixtures were studied with the quantity/intensity (Q/I) technique, using chemical extractions, and by exposing the mixtures to simulated rainfall. In both Q/I and simulated rainfall tests, P solubility steadily decreased with increasing sediment proportion in the mixtures. However, in chemical extractions this effect was observed only at high sediment addition rates (10 or 50% [v/v] sediment). At a practically feasible sediment addition rate of 5%, dissolved reactive P (DRP) in percolating water from simulated rainfall decreased by 55% in SIC and by 54% in SL ( < 0.001 in both cases). Particulate P (PP) also showed a decreasing trend with increasing sediment addition rate. Upon prolonged simulated rainfall, the decreasing effect of sediment on DRP and PP declined somewhat. The effects of sediment addition can be attributed partly to increased salt concentrations in the sediment, which have a short-term effect on P mobilization, but mostly to increased concentrations of Al and Fe (hydr)oxides, increasing long-term P sorption capacity. Adding CW sediment at a rate of up to 5% of surface soil volume to soils could provide an alternative to chemical treatment (e.g., with metal salts) for immobilizing P in small, high-risk P leaching areas, such as around drinking troughs in pastures.

  8. Incubation temperature affects multiple measures of immunocompetence in young wood ducks (Aix Sponsa).

    PubMed

    DuRant, Sarah E; Hopkins, William A; Hawley, Dana M; Hepp, Gary R

    2012-02-23

    Parental effects play a vital role in shaping offspring phenotype. In birds, incubation behaviour is a critical parental effect because it influences the early developmental environment and can therefore have lifelong consequences for offspring phenotype. Recent studies that manipulated incubation temperature found effects on hatchling body composition, condition and growth, suggesting that incubation temperature could also affect energetically costly physiological processes of young birds that are important to survival (e.g. immune responses). We artificially incubated wood duck (Aix sponsa) eggs at three biologically relevant temperatures. Following incubation, we used two immunoassays to measure acquired immune responses of ducklings. Ducklings incubated at the lowest temperature had reduced growth, body condition and responses to both of our immune challenges, compared with those from the higher temperatures. Our results show that incubation temperatures can be an important driver of phenotypic variation in avian populations.

  9. Incubation temperature affects multiple measures of immunocompetence in young wood ducks (Aix Sponsa)

    PubMed Central

    DuRant, Sarah E.; Hopkins, William A.; Hawley, Dana M.; Hepp, Gary R.

    2012-01-01

    Parental effects play a vital role in shaping offspring phenotype. In birds, incubation behaviour is a critical parental effect because it influences the early developmental environment and can therefore have lifelong consequences for offspring phenotype. Recent studies that manipulated incubation temperature found effects on hatchling body composition, condition and growth, suggesting that incubation temperature could also affect energetically costly physiological processes of young birds that are important to survival (e.g. immune responses). We artificially incubated wood duck (Aix sponsa) eggs at three biologically relevant temperatures. Following incubation, we used two immunoassays to measure acquired immune responses of ducklings. Ducklings incubated at the lowest temperature had reduced growth, body condition and responses to both of our immune challenges, compared with those from the higher temperatures. Our results show that incubation temperatures can be an important driver of phenotypic variation in avian populations. PMID:21865246

  10. Experimental investigation on phase change materials as heating element for non-electric neonatal incubator

    NASA Astrophysics Data System (ADS)

    Matahari, Rho Natta; Putra, Nandy; Ariantara, Bambang; Amin, Muhammad; Prawiro, Erwin

    2017-02-01

    High number of preterm births is one of the issues in improving health standard. The effort to help premature babies is hampered by high cost of NICU care in hospital. In addition, uneven distribution of electricity to remote area made it hard to operate the incubator. Utilization of phase change material beeswax to non-electricity incubator as heating element becomes alternative option to save premature babies. The objective of this experiment is to investigate the most efficient mass of beeswax according to Indonesian National Standard to earn over time and ideal temperature of incubator. Experiment was performed using prototype incubator, which utilizes natural convection phenomenon in the heating process of incubator. Utilization of fin is to accelerate heat distribution in the incubator. Result of experiment showed that the most efficient mass of PCM is 3 kg, which has 2.45 hours of running time for maintaining temperature of incubator in range of 32-36 °C.

  11. Effects of incubation at various 'room' temperatures on the sensitivity and specificity of Microstix-3.

    PubMed

    Akriotis, V J; Arbus, G S

    1982-01-01

    The feasibility of room temperature incubation of Microstix-3 specimens to detect urinary tract infection was studied. This procedure, if successful, would allow home monitoring of patients and eliminate the need for an incubator. Four Microstix-3 strips were dipped into each of 1,241 urine specimens and incubated at 18, 22, 27 or 37 degree C. Results after incubation for 24 h at 27 degree C and after 48 h at 22 degree C were comparable to those after incubation for 18-24 h at 37 degree C. However, even after 72 h, incubation at 18 degree C did not produce results comparable to those obtained at 37 degree C. It appears that the incubator can be successfully eliminated at the higher temperatures tested if the limits of time outlined are observed.

  12. Effects of environmental factors on incubation patterns of Greater Sage-Grouse

    USGS Publications Warehouse

    Coates, Peter S.; Delehanty, David J.

    2008-01-01

    Birds in which only one sex incubates the eggs are often faced with a direct conflict between foraging to meet metabolic needs and incubation. Knowledge of environmental and ecological factors that shape life-history strategies of incubation is limited. We used continuous videography to make precise measurements of female Greater Sage-Grouse (Centrocercus urophasianus) incubation constancy (percentage of time spent at the nest in a 24-hour period) and recess duration. We used an information-theoretic approach to evaluate incubation patterns in relation to grouse age, timing of incubation, raven abundance, microhabitat, weather, and food availability. Overall, sage-grouse females showed an incubation constancy of 96% and a distinctive bimodal distribution of brief incubation recesses that peaked at sunset and 30 min prior to sunrise. Grouse typically returned to their nests during low light conditions. Incubation constancy of yearlings was lower than that of adults, particularly in the later stages of incubation. Yearlings spent more time away from nests later in the morning and earlier in the evening compared to adults. Video images revealed that nearly all predation events by Common Ravens (Corvus corax), the most frequently recorded predator at sage-grouse nests, took place during mornings and evenings after sunrise and before sunset, respectively. These were the times of the day when sage-grouse typically returned from incubation recesses. Recess duration was negatively related to raven abundance. We found evidence that incubation constancy increased with greater visual obstruction, usually from vegetation, of nests. An understanding of how incubation patterns relate to environmental factors will help managers make decisions aimed at increasing productivity through successful incubation.

  13. Biparental incubation patterns in a high-Arctic breeding shorebird: how do pairs divide their duties?

    PubMed

    Bulla, Martin; Valcu, Mihai; Rutten, Anne L; Kempenaers, Bart

    2014-01-01

    In biparental species, parents may be in conflict over how much they invest into their offspring. To understand this conflict, parental care needs to be accurately measured, something rarely done. Here, we quantitatively describe the outcome of parental conflict in terms of quality, amount, and timing of incubation throughout the 21-day incubation period in a population of semipalmated sandpipers (Calidris pusilla) breeding under continuous daylight in the high Arctic. Incubation quality, measured by egg temperature and incubation constancy, showed no marked difference between the sexes. The amount of incubation, measured as length of incubation bouts, was on average 51min longer per bout for females (11.5h) than for males (10.7h), at first glance suggesting that females invested more than males. However, this difference may have been offset by sex differences in the timing of incubation; females were more often off nest during the warmer period of the day, when foraging conditions were presumably better. Overall, the daily timing of incubation shifted over the incubation period (e.g., for female incubation from evening-night to night-morning) and over the season, but varied considerably among pairs. At one extreme, pairs shared the amount of incubation equally, but one parent always incubated during the colder part of the day; at the other extreme, pairs shifted the start of incubation bouts between days so that each parent experienced similar conditions across the incubation period. Our results highlight how the simultaneous consideration of different aspects of care across time allows sex-specific investment to be more accurately quantified.

  14. Biparental incubation patterns in a high-Arctic breeding shorebird: how do pairs divide their duties?

    PubMed Central

    2014-01-01

    In biparental species, parents may be in conflict over how much they invest into their offspring. To understand this conflict, parental care needs to be accurately measured, something rarely done. Here, we quantitatively describe the outcome of parental conflict in terms of quality, amount, and timing of incubation throughout the 21-day incubation period in a population of semipalmated sandpipers (Calidris pusilla) breeding under continuous daylight in the high Arctic. Incubation quality, measured by egg temperature and incubation constancy, showed no marked difference between the sexes. The amount of incubation, measured as length of incubation bouts, was on average 51min longer per bout for females (11.5h) than for males (10.7h), at first glance suggesting that females invested more than males. However, this difference may have been offset by sex differences in the timing of incubation; females were more often off nest during the warmer period of the day, when foraging conditions were presumably better. Overall, the daily timing of incubation shifted over the incubation period (e.g., for female incubation from evening–night to night–morning) and over the season, but varied considerably among pairs. At one extreme, pairs shared the amount of incubation equally, but one parent always incubated during the colder part of the day; at the other extreme, pairs shifted the start of incubation bouts between days so that each parent experienced similar conditions across the incubation period. Our results highlight how the simultaneous consideration of different aspects of care across time allows sex-specific investment to be more accurately quantified. PMID:24347997

  15. Ranking factors affecting emissions of GHG from incubated agricultural soils

    PubMed Central

    García-Marco, S; Ravella, S R; Chadwick, D; Vallejo, A; Gregory, A S; Cárdenas, L M

    2014-01-01

    Agriculture significantly contributes to global greenhouse gas (GHG) emissions and there is a need to develop effective mitigation strategies. The efficacy of methods to reduce GHG fluxes from agricultural soils can be affected by a range of interacting management and environmental factors. Uniquely, we used the Taguchi experimental design methodology to rank the relative importance of six factors known to affect the emission of GHG from soil: nitrate (NO3−) addition, carbon quality (labile and non-labile C), soil temperature, water-filled pore space (WFPS) and extent of soil compaction. Grassland soil was incubated in jars where selected factors, considered at two or three amounts within the experimental range, were combined in an orthogonal array to determine the importance and interactions between factors with a L16 design, comprising 16 experimental units. Within this L16 design, 216 combinations of the full factorial experimental design were represented. Headspace nitrous oxide (N2O), methane (CH4) and carbon dioxide (CO2) concentrations were measured and used to calculate fluxes. Results found for the relative influence of factors (WFPS and NO3− addition were the main factors affecting N2O fluxes, whilst glucose, NO3− and soil temperature were the main factors affecting CO2 and CH4 fluxes) were consistent with those already well documented. Interactions between factors were also studied and results showed that factors with little individual influence became more influential in combination. The proposed methodology offers new possibilities for GHG researchers to study interactions between influential factors and address the optimized sets of conditions to reduce GHG emissions in agro-ecosystems, while reducing the number of experimental units required compared with conventional experimental procedures that adjust one variable at a time. PMID:25177207

  16. Ranking factors affecting emissions of GHG from incubated agricultural soils.

    PubMed

    García-Marco, S; Ravella, S R; Chadwick, D; Vallejo, A; Gregory, A S; Cárdenas, L M

    2014-07-01

    Agriculture significantly contributes to global greenhouse gas (GHG) emissions and there is a need to develop effective mitigation strategies. The efficacy of methods to reduce GHG fluxes from agricultural soils can be affected by a range of interacting management and environmental factors. Uniquely, we used the Taguchi experimental design methodology to rank the relative importance of six factors known to affect the emission of GHG from soil: nitrate (NO3(-)) addition, carbon quality (labile and non-labile C), soil temperature, water-filled pore space (WFPS) and extent of soil compaction. Grassland soil was incubated in jars where selected factors, considered at two or three amounts within the experimental range, were combined in an orthogonal array to determine the importance and interactions between factors with a L16 design, comprising 16 experimental units. Within this L16 design, 216 combinations of the full factorial experimental design were represented. Headspace nitrous oxide (N2O), methane (CH4) and carbon dioxide (CO2) concentrations were measured and used to calculate fluxes. Results found for the relative influence of factors (WFPS and NO3(-) addition were the main factors affecting N2O fluxes, whilst glucose, NO3(-) and soil temperature were the main factors affecting CO2 and CH4 fluxes) were consistent with those already well documented. Interactions between factors were also studied and results showed that factors with little individual influence became more influential in combination. The proposed methodology offers new possibilities for GHG researchers to study interactions between influential factors and address the optimized sets of conditions to reduce GHG emissions in agro-ecosystems, while reducing the number of experimental units required compared with conventional experimental procedures that adjust one variable at a time.

  17. In-situ incubation of iron-sulfur mineral reveals a diverse chemolithoautotrophic community and a new biogeochemical role for Thiomicrospira.

    PubMed

    Barco, Roman A; Hoffman, Colleen L; Ramírez, Gustavo A; Toner, Brandy M; Edwards, Katrina J; Sylvan, Jason B

    2017-03-01

    Sulfide mineral precipitation occurs at mid-ocean ridge (MOR) spreading centers, both in the form of plume particles and seafloor massive sulfide structures. A common constituent of MOR is the iron-bearing sulfide mineral pyrrhotite, which was chosen as a substrate for in-situ incubation studies in shallow waters of Catalina Island, CA to investigate the colonization of iron-oxidizing bacteria. Microbial community datasets were obtained from in-situ incubated pyrrhotite, allowing for direct comparison to microbial communities of iron-sulfides from active and inactive chimneys in deep-sea environments. Unclassified Gammaproteobacteria and Alphaproteobacteria (Magnetovibrio) largely dominated the bacterial community on pyrrhotite samples incubated in the water column while samples incubated at the surface sediment showed more even dominance by Deltaproteobacteria (Desulfobulbus), Gammaproteobacteria (Piscirickettsiaceae), Alphaproteobacteria (Rhodobacteraceae), and Bacteroidetes (Flavobacteriia). Cultivations that originated from pyrrhotite samples resulted in the enrichment of both, sheath-forming and stalk-forming Zetaproteobacteria. Additionally, a putative novel species of Thiomicrospira was isolated and shown to grow autotrophically with iron, indicating a new biogeochemical role for this ubiquitous microorganism.

  18. Additional double-wall roof in single-wall, closed, convective incubators: Impact on body heat loss from premature infants and optimal adjustment of the incubator air temperature.

    PubMed

    Delanaud, Stéphane; Decima, Pauline; Pelletier, Amandine; Libert, Jean-Pierre; Stephan-Blanchard, Erwan; Bach, Véronique; Tourneux, Pierre

    2016-09-01

    Radiant heat loss is high in low-birth-weight (LBW) neonates. Double-wall or single-wall incubators with an additional double-wall roof panel that can be removed during phototherapy are used to reduce Radiant heat loss. There are no data on how the incubators should be used when this second roof panel is removed. The aim of the study was to assess the heat exchanges in LBW neonates in a single-wall incubator with and without an additional roof panel. To determine the optimal thermoneutral incubator air temperature. Influence of the additional double-wall roof was assessed by using a thermal mannequin simulating a LBW neonate. Then, we calculated the optimal incubator air temperature from a cohort of human LBW neonate in the absence of the additional roof panel. Twenty-three LBW neonates (birth weight: 750-1800g; gestational age: 28-32 weeks) were included. With the additional roof panel, R was lower but convective and evaporative skin heat losses were greater. This difference can be overcome by increasing the incubator air temperature by 0.15-0.20°C. The benefit of an additional roof panel was cancelled out by greater body heat losses through other routes. Understanding the heat transfers between the neonate and the environment is essential for optimizing incubators.

  19. Sediment Toxicity Identification Evaluation

    EPA Science Inventory

    Approach combining chemical manipulations and aquatic toxicity testing, generally with whole organisms, to systematically characterize, identify and confirm toxic substances causing toxicity in whole sediments and sediment interstitial waters. The approach is divided into thre...

  20. Contaminated Sediment Core Profiling

    EPA Science Inventory

    Evaluating the environmental risk of sites containing contaminated sediments often poses major challenges due in part to the absence of detailed information available for a given location. Sediment core profiling is often utilized during preliminary environmental investigations ...

  1. Sediment Toxicity Identification Evaluation

    EPA Science Inventory

    Approach combining chemical manipulations and aquatic toxicity testing, generally with whole organisms, to systematically characterize, identify and confirm toxic substances causing toxicity in whole sediments and sediment interstitial waters. The approach is divided into thre...

  2. Indicators: Sediment Enzymes

    EPA Pesticide Factsheets

    Sediment enzymes are proteins that are produced by microorganisms living in the sediment or soil. They are indicators of key ecosystem processes and can help determine which nutrients are affecting the biological community of a waterbody.

  3. Contaminated Sediment Core Profiling

    EPA Science Inventory

    Evaluating the environmental risk of sites containing contaminated sediments often poses major challenges due in part to the absence of detailed information available for a given location. Sediment core profiling is often utilized during preliminary environmental investigations ...

  4. Fluvial sediment concepts

    USGS Publications Warehouse

    Guy, Harold P.

    1970-01-01

    This report is the first of a series concerned with the measurement of and recording of information about fluvial sediment and with related environmental data needed to maintain and improve basic sediment knowledge. Concepts presented in this report involve (1) the physical characteristics of sediment which include aspects relative 'to weathering, soils, resistance to erosion, and particle size, (2) sediment erosion, transport, and deposition characteristics, which include aspects relative to fine sediment and overland flow, coarse sediment and streamflow, variations in stream sediment concentration, deposition, and denudation, (3) geomorphic considerations, which include aspects relative to the drainage basin, mass wasting, and channel properties, (4) economic aspects, and (5) data needs and program objectives to be attained through the use of several kinds of sediment records.

  5. Superfund: Contaminated Sediments

    EPA Pesticide Factsheets

    Contaminated sediments are a significant environmental problem and contribute to the over 3,200 fish consumption advisories nationwide. The Superfund program cleans up sediment sites that present an unacceptable risk to human health or the environment.

  6. Georges Bank: A leaky incubator of Alexandrium fundyense blooms

    NASA Astrophysics Data System (ADS)

    McGillicuddy, D. J.; Townsend, D. W.; Keafer, B. A.; Thomas, M. A.; Anderson, D. M.

    2014-05-01

    A series of oceanographic surveys on Georges Bank document variability of populations of the toxic dinoflagellate Alexandrium fundyense on time scales ranging from synoptic to seasonal to interannual. Blooms of A. fundyense on Georges Bank can reach concentrations on the order of 104 cells l-1, and are generally bank-wide in extent. Georges Bank populations of A. fundyense appear to be quasi-independent of those in the adjacent coastal Gulf of Maine, insofar as they occupy a hydrographic niche that is colder and saltier than their coastal counterparts. In contrast to coastal populations that rely on abundant resting cysts for bloom initiation, very few cysts are present in the sediments on Georges Bank. Bloom dynamics must therefore be largely controlled by the balance between growth and mortality processes, which are at present largely unknown for this population. Based on correlations between cell abundance and nutrient distributions, ammonium appears to be an important source of nitrogen for A. fundyense blooms on Georges Bank.

  7. Georges Bank: a leaky incubator of Alexandrium fundyense blooms

    PubMed Central

    McGillicuddy, D.J.; Townsend, D.W.; Keafer, B.A.; Thomas, M.A.; Anderson, D.M.

    2012-01-01

    A series of oceanographic surveys on Georges Bank document variability of populations of the toxic dinoflagellate Alexandrium fundyense on time scales ranging from synoptic to seasonal to interannual. Blooms of A. fundyense on Georges Bank can reach concentrations on the order of 104 cells l−1, and are generally bank-wide in extent. Georges Bank populations of A. fundyense appear to be quasi-independent of those in the adjacent coastal Gulf of Maine, insofar as they occupy a hydrographic niche that is colder and saltier than their coastal counterparts. In contrast to coastal populations that rely on abundant resting cysts for bloom initiation, very few cysts are present in the sediments on Georges Bank. Bloom dynamics must therefore be largely controlled by the balance between growth and mortality processes, which are at present largely unknown for this population. Based on correlations between cell abundance and nutrient distributions, ammonium appears to be an important source of nitrogen for A. fundyense blooms on Georges Bank. PMID:24976691

  8. Fine sediment impacts on Salmonid spawning success: Relative effects of pore blockage and oxygen demand

    NASA Astrophysics Data System (ADS)

    Pattison, I.; Sear, D.; Collins, A.; Jones, I.; Naden, P.

    2013-12-01

    Salmonids act as geomorphic agents constructing a spawning habitat (redd) with fine sediment being washed out of the bed, increasing porosity around the incubating eggs. However, during the incubation period fine sediment infiltrates back into the river bed and degrades the habitat quality. Fine sediment has been found to reduce survival rates of salmonid eggs in both field and laboratory experiments, with the main hypotheses used to explain this being (a) fine sediment reduces gravel permeability and intra-gravel flow velocities; (b) intra-gravel O2 concentrations decrease due to reduced supply and increased consumption by organic sediments; and (c) clay particles block the exchange of O2 across the egg membrane. The SIDO (Sediment Intrusion and Dissolved Oxygen)-UK model is a physically based numerical model which stimulates the effect of fine sediment intrusion on the abiotic characteristics of the salmonid redd, along with the consequences for egg development and survival. This has been used to assess the sensitivity of salmonid egg survival to changes in the quantity and composition of fine sediment, including particle size and sediment oxygen demand. Results indicate that egg survival is highly sensitive to the discharge and the suspended sediment concentrations, particularly to changes in the supply rate of sand particles, rather than silt and clay. This can be explained by the increased likelihood of blocking of intra-gravel pores by larger sand particles, which reduce intra-gravel flow velocities and the supply of oxygen rich water. Furthermore, this effect of sediment mass has been found to be more important than the sediment oxygen consumption process. These findings have implications for how we manage the sediment delivery problem, especially as future projections indicate increased sediment delivery under climate and land management change.

  9. Effects of incubation temperature on growth and performance of the veiled chameleon (Chamaeleo calyptratus).

    PubMed

    Andrews, Robin M

    2008-10-01

    I evaluated the effect of incubation temperature on phenotypes of the veiled chameleon, Chamaeleo calyptratus. I chose this species for study because its large clutch size (30-40 eggs or more) allows replication within clutches both within and among experimental treatments. The major research objectives were (1) to assess the effect of constant low, moderate, and high temperatures on embryonic development, (2) to determine whether the best incubation temperature for embryonic development also produced the "best" hatchlings, and (3) to determine how a change in incubation temperature during mid-development would affect phenotype. To meet these objectives, I established five experimental temperature regimes and determined egg survival and incubation length and measured body size and shape, selected body temperatures, and locomotory performance of lizards at regular intervals from hatching to 90 d, or just before sexual maturity. Incubation temperature affected the length of incubation, egg survival, and body mass, but did not affect sprint speed or selected body temperature although selected body temperature affected growth in mass independently of treatment and clutch. Incubation at moderate temperatures provided the best conditions for both embryonic and post-hatching development. The highest incubation temperatures were disruptive to development; eggs had high mortality, developmental rate was low, and hatchlings grew slowly. Changes in temperature during incubation increased the among-clutch variance in incubation length relative to that of constant temperature treatments.

  10. Incubation temperature influences locomotor performance in young wood ducks (Aix sponsa).

    PubMed

    Hopkins, Brittney Cole; Durant, Sarah Elizabeth; Hepp, Gary Richard; Hopkins, William Alexander

    2011-06-01

    Incubation temperature is an important maternal effect in birds that can influence numerous offspring traits. For example, ducklings from eggs incubated at lower temperatures have lower growth rates, protein content, and are in poorer body condition than ducklings from eggs incubated at higher temperatures. Based on these observations, we predicted that incubation temperature would indirectly influence performance through its direct effects on body size. Wood duck (Aix sponsa) eggs were incubated at three ecologically relevant temperatures (35, 35.9, 37°C). After hatching, all ducklings were housed under identical conditions and were subjected to aquatic and terrestrial racing trials at 15 and 20 days posthatch (dph). Contrary to our prediction, incubation temperature did not influence most duckling body size parameters at 15 or 20 dph. However, incubation temperature did have a strong influence on locomotor performance independent of body size and body condition. Ducklings hatched from eggs incubated at the lowest temperature had significantly reduced maximum aquatic swim velocity than ducklings from higher temperatures. Maximum terrestrial sprint velocity followed a similar pattern, but did not differ statistically among incubation treatments. To our knowledge, this is the first study to demonstrate that slight changes in incubation temperature can directly affect locomotor performance in avian offspring and thus provide a significant source of phenotypic variation in natural wood duck populations. Copyright © 2011 Wiley-Liss, Inc., A Wiley Company.

  11. Incubation temperature effects on hatchling performance in the loggerhead sea turtle (Caretta caretta).

    PubMed

    Fisher, Leah R; Godfrey, Matthew H; Owens, David W

    2014-01-01

    Incubation temperature has significant developmental effects on oviparous animals, including affecting sexual differentiation for several species. Incubation temperature also affects traits that can influence survival, a theory that is verified in this study for the Northwest Atlantic loggerhead sea turtle (Caretta caretta). We conducted controlled laboratory incubations and experiments to test for an effect of incubation temperature on performance of loggerhead hatchlings. Sixty-eight hatchlings were tested in 2011, and 31 in 2012, produced from eggs incubated at 11 different constant temperatures ranging from 27°C to 33°C. Following their emergence from the eggs, we tested righting response, crawling speed, and conducted a 24-hour long swim test. The results support previous studies on sea turtle hatchlings, with an effect of incubation temperature seen on survivorship, righting response time, crawling speed, change in crawl speed, and overall swim activity, and with hatchlings incubated at 27°C showing decreased locomotor abilities. No hatchlings survived to be tested in both years when incubated at 32°C and above. Differences in survivorship of hatchlings incubated at high temperatures are important in light of projected higher sand temperatures due to climate change, and could indicate increased mortality from incubation temperature effects.

  12. Incubation Temperature Effects on Hatchling Performance in the Loggerhead Sea Turtle (Caretta caretta)

    PubMed Central

    Fisher, Leah R.; Godfrey, Matthew H.; Owens, David W.

    2014-01-01

    Incubation temperature has significant developmental effects on oviparous animals, including affecting sexual differentiation for several species. Incubation temperature also affects traits that can influence survival, a theory that is verified in this study for the Northwest Atlantic loggerhead sea turtle (Caretta caretta). We conducted controlled laboratory incubations and experiments to test for an effect of incubation temperature on performance of loggerhead hatchlings. Sixty-eight hatchlings were tested in 2011, and 31 in 2012, produced from eggs incubated at 11 different constant temperatures ranging from 27°C to 33°C. Following their emergence from the eggs, we tested righting response, crawling speed, and conducted a 24-hour long swim test. The results support previous studies on sea turtle hatchlings, with an effect of incubation temperature seen on survivorship, righting response time, crawling speed, change in crawl speed, and overall swim activity, and with hatchlings incubated at 27°C showing decreased locomotor abilities. No hatchlings survived to be tested in both years when incubated at 32°C and above. Differences in survivorship of hatchlings incubated at high temperatures are important in light of projected higher sand temperatures due to climate change, and could indicate increased mortality from incubation temperature effects. PMID:25517114

  13. Characterizing the nutritional strategy of incubating king eiders Somateria spectabilis in northern Alaska

    USGS Publications Warehouse

    Bentzen, R.L.; Powell, A.N.; Williams, T.D.; Kitaysky, A.S.

    2008-01-01

    We measured plasma concentrations of variables associated with lipid metabolism (free fatty acids, glycerol, triglyceride, and ??- hydroxybutyrate), protein metabolism (uric acid), and baseline corticosterone to characterize the nutritional state of incubating king eiders Somateria spectabilis and relate this to incubation constancy at two sites, Kuparuk and Teshekpuk, in northern Alaska. King eiders at both sites appeared to employ a partial-income incubation strategy, relying on both endogenous and exogenous energy resources. Females maintained high invariant levels of free fatty acids, ??-hydroxybutyrate, and glycerol throughout incubation, indicating that fat reserves were a major energy source, and not completely depleted during incubation. Similarly, uric acid did not increase, suggesting effective protein sparing or protein ingestion and adequate lipid reserves throughout incubation. Baseline corticosterone and triglyceride levels increased during incubation, indicative of an increase in foraging during late stages of incubation. Incubating females at Kuparuk had higher triglyceride concentrations but also had higher ??-hydroxybutyrate concentrations than females at Teshekpuk. This dichotomy may reflect a short-term signal of feeding overlaying the longer-term signal of reliance on endogenous lipid reserves due to higher food intake yet higher metabolic costs at Kuparuk because of its colder environment. Incubation constancy was not correlated with plasma concentrations of lipid or protein metabolites. ?? 2008 The Authors.

  14. Rapid assay for microbially reducible ferric iron in aquatic sediments

    USGS Publications Warehouse

    Lovely, Derek R.; Philips , Elizabeth J.P.

    1987-01-01

    The availability of ferric iron for microbial reduction as directly determined by the activity of iron-reducing organisms was compared with its availability as determined by a newly developed chemical assay for microbially reducible iron. The chemical assay was based on the reduction of poorly crystalline ferric iron by hydroxylamine under acidic conditions. There was a strong correlation between the extent to which hydroxylamine could reduce various synthetic ferric iron forms and the susceptibility of the iron to microbial reduction in an enrichment culture of iron-reducing organisms. When sediments that contained hydroxylamine-reducible ferric iron were incubated under anaerobic conditions, ferrous iron accumulated as the concentration of hydroxylamine-reducible ferric iron declined over time. Ferrous iron production stopped as soon as the hydroxylamine-reducible ferric iron was depleted. In anaerobic incubations of reduced sediments that did not contain hydroxylamine-reducible ferric iron, there was no microbial iron reduction, even though the sediments contained high concentrations of oxalate-extractable ferric iron. A correspondence between the presence of hydroxylamine-reducible ferric iron and the extent of ferric iron reduction in anaerobic incubations was observed in sediments from an aquifer and in fresh- and brackish-water sediments from the Potomac River estuary. The assay is a significant improvement over previously described procedures for the determination of hydroxylamine-reducible ferric iron because it provides a correction for the high concentrations of solid ferrous iron which may also be extracted from sediments with acid. This is a rapid, simple technique to determine whether ferric iron is available for microbial reduction.

  15. Rapid assay for microbially reducible ferric iron in aquatic sediments.

    PubMed

    Lovley, D R; Phillips, E J

    1987-07-01

    The availability of ferric iron for microbial reduction as directly determined by the activity of iron-reducing organisms was compared with its availability as determined by a newly developed chemical assay for microbially reducible iron. The chemical assay was based on the reduction of poorly crystalline ferric iron by hydroxylamine under acidic conditions. There was a strong correlation between the extent to which hydroxylamine could reduce various synthetic ferric iron forms and the susceptibility of the iron to microbial reduction in an enrichment culture of iron-reducing organisms. When sediments that contained hydroxylamine-reducible ferric iron were incubated under anaerobic conditions, ferrous iron accumulated as the concentration of hydroxylamine-reducible ferric iron declined over time. Ferrous iron production stopped as soon as the hydroxylamine-reducible ferric iron was depleted. In anaerobic incubations of reduced sediments that did not contain hydroxylamine-reducible ferric iron, there was no microbial iron reduction, even though the sediments contained high concentrations of oxalate-extractable ferric iron. A correspondence between the presence of hydroxylamine-reducible ferric iron and the extent of ferric iron reduction in anaerobic incubations was observed in sediments from an aquifer and in fresh- and brackish-water sediments from the Potomac River estuary. The assay is a significant improvement over previously described procedures for the determination of hydroxylamine-reducible ferric iron because it provides a correction for the high concentrations of solid ferrous iron which may also be extracted from sediments with acid. This is a rapid, simple technique to determine whether ferric iron is available for microbial reduction.

  16. Diagenesis of iron in modern marine sediments

    SciTech Connect

    Canfield, D.E.; Berner, R.A.

    1985-01-01

    Rates of iron liberation to interstitial solution have been measured in vitro on sediments obtained from the rapidly depositing submarine portion of the Mississippi Delta, and from Long Island Sound. Rates were measured by inhibiting sulfate reduction (with molybdate) and following the build-up of dissolved iron with time. Both Mississippi Delta and Long Island Sound sediments show similar exponentially decreasing iron liberation rates with depth. It is found that rates of iron liberation are linearly related to rates of sulfate reduction, with the ratio of sulfide production/iron liberation equal to about 100. Unmodified Mississippi Delta sediment was incubated anoxically, and the behavior of dissolved Fe/sup +2/, SO/sub 4//sup -2/ and H/sub 2/S followed with time. A surprising result is that when abundant reactive iron minerals are present, rates of iron liberation are virtually the same in both the absence and presence of sulfate reduction. This means that for reactive Fe-rich sediments all H/sub 2/S liberated by sulfate reduction can be precipitated by reaction with detrital iron minerals to form iron sulfides so that relatively high concentrations of pore water iron can be observed in the presence of appreciable H/sub 2/S production. It also means that iron liberation to solution is most likely the result of bacterial iron reduction, and not the reduction of ferric oxides by dissolved sulfide. Diagenetic modeling of iron profiles using iron liberation rate measurements backs this contention.

  17. Concentrations of Elements in Sediments and Selective Fractions of Sediments, and in Natural Waters in Contact with Sediments from Lake Roosevelt, Washington, September 2004

    USGS Publications Warehouse

    Paulson, Anthony J.; Wagner, Richard J.; Sanzolone, Richard F.; Cox, Steven E.

    2006-01-01

    Twenty-eight composite and replicate sediment samples from 8 Lake Roosevelt sites were collected and analyzed for 10 alkali and alkaline earth elements, 2 non-metals, 20 metals, and 4 lanthanide and actinide elements. All elements were detected in all sediment samples except for silver (95 percent of the elements detected for 1,008 analyses), which was detected only in 4 samples. Sequential selective extraction procedures were performed on single composite samples from the eight sites. The percentage of detections for the 31 elements analyzed ranged from 76 percent for the first extraction fraction using a weak extractant to 93 percent for the four-acid dissolution of the sediments remaining after the third sequential selective extraction. Water samples in various degrees of contact with the sediment were analyzed for 10 alkali and alkaline earth elements, 5 non-metals, 25 metals, and 16 lanthanide and actinide elements. The filtered water samples included 10 samples from the reservoir water column at 8 sites, 32 samples of porewater, 55 samples from reservoir water overlying sediments in 8 cores from the site incubated in a field laboratory, and 24 water samples that were filtered after being tumbled with sediments from 8 sites. Overall, the concentrations of only 37 percent of the 6,776 analyses of the 121 water samples were greater than the reporting limit. Selenium, bismuth, chromium, niobium, silver, and zirconium were not detected in any water samples. The percentage of concentrations for the water samples that were above the reporting limit ranged from 14 percent for the lanthanide and actinide elements to 77 percent for the alkali and alkaline earth elements. Concentrations were greater than reporting limits in only 23 percent of the analyses of reservoir water and 29 percent of the analyses of reservoir water overlying incubation cores. In contrast, 47 and 48 percent of the concentrations of porewater and water samples tumbled with sediments, respectively

  18. Changes in microbial community during removal of BDE-153 in four types of aquatic sediments.

    PubMed

    Pan, Ying; Chen, Juan; Zhou, Haichao; Tam, Nora F Y

    2017-09-18

    Indigenous microorganisms in sediments could degrade polybrominated diphenyl ethers (PBDEs), but how the microbial communities respond to PBDEs was seldom reported. The effect of BDE-153, a common congener in aquatic environments, on the microbial communities in four types of aquatic sediments was evaluated during the 150days' incubation under an anaerobic condition. The intrinsic potential to remove BDE-153 varied significantly among four sediment types, and the removal rates of mangrove, mudflat, marine and freshwater sediments were 0.013, 0.013, 0.011, and 0.009day(-1), respectively. The observed microbial species, Simpson, Shannon, and Chao1 indices in all sediments were rather stable and were not changed significantly by BDE-153 amendment. However, BDE-153 amendment altered the microbial community compositions in three saline sediments at the end of the incubation period. Distance-based multivariate multiple regression analysis revealed that salinity, total organic carbon (TOC) and BDE-52, the major debromination product of BDE-153, were the three main factors explaining the variations in microbial community compositions in BDE-treated sediments; whereas salinity, TOC and pH were the main contributing factors in control sediments without BDE-153. The daughter congeners generated during anaerobic debromination process need more attention, especially their effect on the microbial communities in aquatic sediments. Copyright © 2017 Elsevier B.V. All rights reserved.

  19. Methanotrophy in surface sediments of streams

    NASA Astrophysics Data System (ADS)

    Bagnoud, Alexandre; Pramateftaki, Paraskevi; Peter, Hannes; Battin, Tom

    2017-04-01

    Because streams are often found to be supersaturated in methane (CH4), they are considered as atmospheric sources of this greenhouse gas. However, little is known about the processes driving CH4 cycling in these environments, i.e. production, consumption and fluxes. CH4 is thought to be produced in deeper anoxic sediments, before it migrates up to reach the oxic stream water, where it can be oxidized by methanotrophs. In order to gain insights into this process, we investigated 14 different streams across Switzerland. We characterized the chemistry of surface and sediment waters by measuring dissolved chemical profiles. We also sampled surface sediments and determined methanotrophic rates with laboratory incubations and Michaelis-Menten modeling. Interestingly, rates were strongly correlated with the CH4 concentrations in stream waters, rather than in sediment waters. This indicates that methantrophic populations feed on CH4 from the surface streamwater, even though CH4 concentrations are higher in the sediment waters. Methanotrophy rates were also correlated with Crenothrix counts (based on 16S rRNA sequencing), a strict methanotroph, while this latter was correlated with pmoA counts (based on quantitative PCR), a gene involved in methanotrophy. These results show that Crenothrix genera are the most active methanotrophs in surface sediments of streams, and can represent more than 2% of microbial communities. Remarkably, the dominating Crenothrix species was detected in all 14 samples. This work allows the assessment of in situ methanotrophic rates, of the environmental parameters driving this process, and of the microbial populations carrying it out, and thus brings useful insights about carbon cycling in streams.

  20. Production of carbonate sediments by a unicellular green alga

    USGS Publications Warehouse

    Yates, K.K.; Robbins, L.L.

    1998-01-01

    This study investigates the ability of the unicellular green alga Natmochloris atoimis to precipitate CaCO3, quantifies mineral precipitation rates, estimates sediment production in a N. atomiis bloom, and discusses the implications of microbial calcification for carbonate sediment deposition. A series of N. atomus cultures, isolated from Lake Reeve, Australia, were incubated at various pH and calcium concentrations to determine environmental parameters for calcification. Rates of calcification were calculated from initial and postincubation alkalinity, pH, and calcium measurements. Replicate experiments and controls consisting of non-calcifying cultures, uninoculated media, and dead cell cultures were performed using environmental culture parameters determined in series cultures. Average calcification rates from replicate experiments were used to predict daily sediment production rates in a small bloom of N. atomus. N. atomus precipitates 0.138 g/L of calcite in approximately 4 h when incubated at pH 8.5, 14.24 mM calcium concentration, 33 ??C, 100 ??E/m2/s light intensity, and a cell population density of 107 cells/mL. Assuming continuous precipitation, this corresponds to a maximum estimated sediment production rate of 1.6 ?? 106 kg of CaCO3, per 12 h day in a single bloom of 3.2 ?? 109 L. Our results suggest that microbial calcification contributes significantly to the carbonate sediment budget.

  1. Enzymatic Hydrolysis of Organic Phosphorus in River Bed Sediments

    NASA Astrophysics Data System (ADS)

    Wang, J.; Pant, H. K.

    2009-12-01

    Enzymatic hydrolysis of phosphorus (P) in bed sediments is an important process that maintains bioavailable P in the river systems. The P bioavailability is the criteria for assessing the eutrophication potential in rivers and streams. The objective of this research was to determine potential bioavailability of organic P (OP) in the Bronx River bed sediments using native phosphatases (NP) and phosphodiesterase (PDEase) hydrolysis. The bed sediments collected in summer 2006 and 2007 were incubated at 37C for 6 h at pH 7.5 with NP. The results showed that NP hydrolyzed substantial amount of OP (up to 76%) under favorable temperature and pH, indicating OP could be hydrolyzed under increased temperature, in turn, increase in P availability in the river. Similarly, the sediments incubated with PDEase under 37C at pH 8.8, the results showed that up to 82% of OP could be hydrolyzed. Strong correlations between percentage of OP hydrolyzed by PDEase and organic matter (OM) were observed for sediments collected in 2006 (r = 0.745; p≤0.01) and 2007 (r = 0.724; p≤0.01), indicating PDEase hydrolysable P is mainly with organic matter. The local hydro-climatic changes such as temperature increase and pH could hydrolyze substantial amount of OP and increase bioavailable P in water column, resulting in potential threat to the river ecosystems.

  2. Accumulation of soil carbon drives denitrification potential and lab-incubated gas production along a chronosequence of salt marsh development

    NASA Astrophysics Data System (ADS)

    He, Yanlong; Widney, Sarah; Ruan, Michelle; Herbert, Ellen; Li, Xiuzhen; Craft, Christopher

    2016-04-01

    We measured sediment organic carbon and nitrogen accumulation and rates of denitrification enzyme activity and greenhouse gas (CO2, CH4, N2O) production from slurries of sediments of a mudflat that formed in 2002, a young (8-year-old) natural Spartina alterniflora salt marsh that developed on part of the mudflat, and four mature (>200 years old) salt marshes in southeastern Georgia to examine microbial processes related to carbon (C) and nitrogen (N) cycling during succession from mudflat to mature marsh. Soil organic C and N and C: N ratio (0-30 cm) increased across the chronosequence from mudflat (791 ± 35 g C/m2, 125 ± 17 g N/m2) to young marsh (2520 ± 131 g C/m2, 190 ± 10 g N/m2) to mature marshes (5827 ± 250 g C/m2, 372 ± 20 g N/m2). After 8 years of colonization by S. alterniflora, sediment organic carbon increased 3.2 times, and nitrogen increased 1.5 times relative to the mudflat. The high rate of organic C and N accumulation based on time series measurements (188 g C/m2/yr, 7.8 g N/m2/yr) and feldspar marker layers (359 g C/m2/yr, 26.2 g N/m2/yr) was attributed to high accretion (3 cm/yr) in this low elevation (0.18 m NAVD88) emerging marsh. Carbon dioxide production increased with increasing sediment organic C from mudflat to mature marshes. Un-amended denitrification enzyme activity, measured in slurry incubations, ranged from an average of 0.020 ± 0.005 μg g-1 hr-1 in the mature marshes to 0.094 ± 0.03 μg g-1 hr-1 in the young marsh. We also measured denitrification potential in slurry incubations amended with C (glucose), N (nitrate), and C + N to assess the potential for substrate limitations. Denitrification potential in the mudflat did not show strong nutrient limitation. In the young marsh, denitrification potential was C-limited, and in the mature marsh, it was co-limited by C and N. In July samples, CO2 production showed a statistically significant increase with age from the mudflat to the mature marshes. However, in both months, CO2

  3. Temperature variations within and between incubators-a prospective, observational study.

    PubMed

    Walker, Meredith W; Butler, Julia M; Higdon, H Lee; Boone, William R

    2013-12-01

    To determine if there is a temperature variation within and between incubators. This prospective, experimental trial with external controls was performed at an Assisted Reproductive Technology laboratory in a tertiary-care, university hospital. Temperature values were taken at various locations within and between incubators. Even though they were both set to 37.0 °C, the same make and model incubators had significantly different internal temperatures. Temperatures differed significantly among top, middle and bottom shelves and between fronts and backs of shelves. We found temperatures differed within and between our front-loading incubators. Thus, laboratory personnel should evaluate their incubators for temperature variations within and between incubators and, if temperatures differ significantly, develop a plan to deal with discrepancies.

  4. Effects of spatial and temporal variation of acid-volatile sulfide on the bioavailability of copper and zinc in freshwater sediments

    SciTech Connect

    Besser, J.M.; Ingersoll, C.G.; Giesy, J.P.

    1996-03-01

    Variation in concentrations of acid-volatile sulfide (AVS) in sediments from the upper Clark Fork River of Montana, USA, was associated with differences in bioaccumulation of Cu and Zn and growth of larvae of the midge, Chironomus tentans. Growth of midge larvae was significantly greater and bioaccumulation of Cu was significantly less in surface sections (0--3 cm depth) of sediment cores, which had greater concentrations of AVS and lesser ratios of simultaneously extracted metals to AVS (SEM:AVS ratios) than in subsurface sediments (6--9 cm). Concentrations of AVS were significantly less in sediments incubated with oxic overlying water for 9 weeks than in the same sediments incubated under anoxic conditions. Bioaccumulation of Cu differed significantly between incubation treatments, corresponding to differences in concentrations of AVS and SEM:AVS ratios, although midge growth did not. Bioaccumulation of Zn did not differ significantly between depth strata of sediment cores or between incubation treatments. When results from the two sets of bioassays were combined, bioaccumulation of Cu and Zn, but not growth, was significantly correlated with SEM:AVS ratios and other estimates of bioavailable metal fractions in sediments. Growth of midge larvae was significantly correlated with bioaccumulation of Zn, but not Cu, suggesting that Zn was the greater contributor to the toxicity of these sediments. Assessments of the toxicity of metal-contaminated freshwater sediments should consider the effects of spatial and temporal variation in AVS concentrations on metal bioavailability.

  5. Testing potential bias in marine plankton respiration rates by dark bottle incubations in the NW Iberian shelf: incubation time and bottle volume

    NASA Astrophysics Data System (ADS)

    Elena García-Martín, Enma; Serret, Pablo; Pérez-Lorenzo, María

    2011-04-01

    The accurate determination of the balance between plankton production and respiration in the ocean is important for C budgets and global change predictions. Disagreements on the measurement of such a balance at different scales (from microbiological to biogeochemical) have produced a controversy over the trophic status of the ocean. This is especially striking in the oligotrophic open ocean, where plankton community O 2 consumption rates in 24 h incubations have frequently produced a net heterotrophic balance, but similar difficulties emerge in coastal systems. These results have been criticised due to the possibility that the standard 24 h in vitro incubations are biased because of the long incubation time needed and the so-called "bottle effect". To study the influence of the incubation time and bottle volume on the measurement of plankton net metabolism, we carried out several time series experiments in the NW Iberian coastal system. Here we present measurements of plankton community respiration rates concurrently obtained through (1) standard in vitro changes in dissolved oxygen concentration after different incubation times ranging from 2 to 48 h, and with bottle volumes of 50, 125 and 570 mL, and (2) the decrease in the oxygen concentration measured every 20 s with oxygen microsensors, during 48 h. Our results refute the contention that 24 h dark 125 mL bottle incubations are systematically biased, and highlight the validity of oxygen microsensors to study the dynamics of natural marine plankton respiration.

  6. Evaluating propagation method performance over time with Bayesian updating: an application to incubator testing

    USGS Publications Warehouse

    Converse, Sarah J.; Chandler, J. N.; Olsen, G.H.; Shafer, C. C.; Hartup, Barry K.; Urbanek, Richard P.

    2010-01-01

    In captive-rearing programs, small sample sizes can limit the quality of information on performance of propagation methods. Bayesian updating can be used to increase information on method performance over time. We demonstrate an application to incubator testing at USGS Patuxent Wildlife Research Center. A new type of incubator was purchased for use in the whooping crane (Grus americana) propagation program, which produces birds for release. We tested the new incubator for reliability, using sandhill crane (Grus canadensis) eggs as surrogates. We determined that the new incubator should result in hatching rates no more than 5% lower than the available incubators, with 95% confidence, before it would be used to incubate whooping crane eggs. In 2007, 5 healthy chicks hatched from 12 eggs in the new incubator, and 2 hatched from 5 in an available incubator, for a median posterior difference of <1%, but with a large 95% credible interval (-41%, 43%). In 2008, we implemented a double-blind evaluation method, where a veterinarian determined whether eggs produced chicks that, at hatching, had no apparent health problems that would impede future release. We used the 2007 estimates as priors in the 2008 analysis. In 2008, 7 normal chicks hatched from 15 eggs in the new incubator, and 11 hatched from 15 in an available incubator, for a median posterior difference of 19%, with 95% credible interval (-8%, 44%). The increased sample size has increased our understanding of incubator performance. While additional data will be collected, at this time the new incubator does not appear adequate for use with whooping crane eggs.

  7. Chemical controls on abiotic and biotic release of geogenic arsenic from Pleistocene aquifer sediments to groundwater.

    PubMed

    Gillispie, Elizabeth C; Andujar, Erika; Polizzotto, Matthew L

    2016-08-10

    Over 150 million people in South and Southeast Asia consume unsafe drinking water from arsenic-rich Holocene aquifers. Although use of As-free water from Pleistocene aquifers is a potential mitigation strategy, such aquifers are vulnerable to geogenic As pollution, placing millions more people at potential risk. The goal of this research was to define chemical controls on abiotic and biotic release of geogenic As to groundwater. Batch incubations of sediments with natural chemical variability from a Pleistocene aquifer in Cambodia were conducted to evaluate how interactions among arsenic, manganese and iron oxides, and dissolved and sedimentary organic carbon influenced As mobilization from sediments. The addition of labile dissolved organic carbon produced the highest concentrations of dissolved As after >7 months, as compared to sediment samples incubated with sodium azide or without added carbon, and the extent of As release was positively correlated with the percent of initial extractable Mn released from the sediments. The mode of As release was impacted by the source of DOC supplied to the sediments, with biological processes responsible for 81% to 85% of the total As release following incubations with lactate and acetate but only up to 43% to 61% of the total As release following incubations with humic and fulvic acids. Overall, cycling of key redox-active elements and organic-carbon reactivity govern the potential for geogenic As release to groundwater, and results here may be used to formulate better predictions of the arsenic pollution potential of aquifers in South and Southeast Asia.

  8. Influences of sediment dessication on phosphorus transformations in an intertidal marsh: formation and release of phosphine.

    PubMed

    Hou, Lijun; Liu, Min; Ding, Pingxing; Zhou, Junliang; Yang, Yi; Zhao, Di; Zheng, Yanli

    2011-05-01

    This study investigated the effects of sediment dewatering on the phosphorus transformations concerning about the production and emission of phosphine in the intertidal marsh of the Yangtze Estuary. The concentrations of matrix-bound phosphine ranged from 18.62-72.53 ng kg(-1) and 31.14-61.22 ng kg(-1) within the August and January exposure incubations, respectively. The responses of matrix-bound phosphine concentrations to sediment dessication demonstrate that the production (or accumulation) of matrix-bound phosphine significantly increased with water loss at the start of the emersion incubations. However, further dehydration inhibited the formation of matrix-bound phosphine in sediments. The significant correlations of matrix-bound phosphine with the organic-P bacteria abundance and alkaline phosphatase activities implicate that the production of matrix-bound phosphine within the dessication incubations was linked closely to the microbial decomposition of organic P. The emissions of phosphine generally decreased with sediment dewatering, with the fluxes of 7.51-96.73 ng m(-2)h(-1) and 5.34-77.74 ng m(-2)h(-1) over the exposure incubations of both August and January, respectively. Also, it is observed that the releases of phosphine during the entire exposure periods were affected not only by its production but also by sediment water and redox conditions. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

  9. The Role of Cable Bacteria on Porewater Acidity in an Organic Rich Coastal Sediment

    NASA Astrophysics Data System (ADS)

    Malkin, S.; Rao, A. M. F.; Seitaj, D.; Burdorf, L. D.; Hidalgo-Martinez, S.; Tramper, A.; Meysman, F. J. R.

    2016-02-01

    Sulphide generating coastal sediments are characterised by steep redox gradients. To connect energetically favorable electron donors and acceptors in such sediments, a variety of different microbial strategies have evolved. For example, the well-known sulphur oxidizing bacteria Beggiatoa can acquire nitrate near the sediment surface and transport this electron acceptor deeper in the sediment to oxidize sulphide. Recently, a very different bacterial sulphur oxidizing lifestyle was described in marine sediments. Cable bacteria (family Desulfobulbaceae) grow as long filaments capable of conducting electrons across centimeter-scale distances, from deep reducing sediments up to surface oxic sediments. Ex situ sediment incubation experiments have shown that cable bacteria can exert a powerful control on porewater pH and associated sediment geochemistry. Yet, the biogeography of these novel bacteria, and their influence on sediment geochemistry in natural environments, is not yet well understood. Here we report on a study carried out at an intertidal mussel bed and an oyster reef in the Wadden Sea (The Netherlands). In all sediments examined, nitrate-storing Beggiatoa were nearly absent, while cable bacteria were consistently abundant, with densities reaching up to 1038 m cm-2. Microsensor profiling revealed acidity distributions that were expected for sediments hosting cable bacteria, with pH maxima near the sediment surface (up to 8.3), and pH minima near the sulphide horizon (down to 6.1). Porewater analyses revealed strongly elevated concentrations of dissolved calcium (< 35 mM), manganese (up to 250 µM), and iron (up to 700 µM), consistent with acidity-driven dissolution of calcium carbonates and iron sulphides associated with cable bacteria activity. Overall, cable bacteria are shown to exert a powerful control on the sediment acidity of coastal bivalve bed sediments, which may have broad implications, particularly for sediment alkalinity fluxes and for carbonate

  10. Dislocation associated incubational domain formation in lightly gadolinium-doped ceria.

    PubMed

    Li, Zhi-Peng; Mori, Toshiyuki; Ye, Fei; Ou, Ding Rong; Zou, Jin; Drennan, John

    2011-02-01

    Nanosized incubational domain was observed in 10 at.% gadolinium-doped ceria (GDC) using high-resolution transmission electron microscopy. Dislocations were extensively observed in 10 at.% GDC instead of heavily doped 25 at.% GDC. By Fast Fourier Transform and Inverse Fast Fourier Transform analysis, it was noticed that the incubational domain existing in 10 at.% GDC has different lattice spacing and orientation from the neighboring ceria matrix. Furthermore, dislocations were usually observed in the interface region between the incubational domain and the ceria matrix. Based on experimental results, the formation mechanism of dislocation associated incubational domain in lightly gadolinium-doped ceria is rationalized.

  11. Variation in incubation periods and egg metabolism in mallards: Intrinsic mechanisms to promote hatch synchrony

    USGS Publications Warehouse

    MacCluskie, Margaret C.; Flint, Paul L.; Sedinger, James S.

    1997-01-01

    We investigated factors affecting incubation time and metabolic rates of Mallard (Anas platyrhynchos) eggs incubated under constant environmental conditions. Time required to reach the star-pipped stage of hatch varied significantly among females, but not with laying sequence or egg size. Metabolic rate of eggs varied positively with position in the laying sequence and tended to vary among females. Metabolic rate did not vary with egg volume or incubation length. Our results indicate metabolic rate may act as one synchronization mechanism for hatch. The role of maternal effects in development time should be considered in subsequent studies of incubation time in ducks.

  12. Comparison of five incubation systems for rat liver slices using functional and viability parameters.

    PubMed

    Olinga, P; Groen, K; Hof, I H; De Kanter, R; Koster, H J; Leeman, W R; Rutten, A A; Van Twillert, K; Groothuis, G M

    1997-10-01

    Precision-cut liver slices are presently used for various research objects, e.g. to study metabolism, transport, and toxicity of xenobiotics. Various incubation systems are presently employed, but a systematic comparison between these incubation systems with respect to preservation of slice function has not been performed yet. Therefore, we started a comparative study to evaluate five of these systems: the shaken flask (an Erlenmeyer in a shaking water bath), the stirred-well (24-well culture plate equipped with grids and magnetic stirrers), rocker platform (6-well culture plate with Netwell insert rocked on a platform), the roller system (dynamic organ culture rolled on an insert in a glass vial), and the 6-well shaker (6-well culture plate in a shaking water bath). The liver slices were incubated in these incubation systems for 0.5, 1.5, and 24.5 h and subsequently subjected to viability and metabolic function tests. The viability of the incubated liver slices was evaluated by: potassium content, MTT assay, energy charge, histomorphology, and LDH leakage. Their metabolic functions were studied by determination of the metabolism of lidocaine, testosterone, and antipyrine. Up to 1.5 h of incubation all five incubation systems gave similar results with respect to viability and metabolic function of the liver slices. However, after 24 h, the shaken flask, the rocker platform, and the 6-well shaker incubation systems appeared to be superior to the stirred well and the roller incubation systems.

  13. Knowledge service decision making in business incubators based on the supernetwork model

    NASA Astrophysics Data System (ADS)

    Zhao, Liming; Zhang, Haihong; Wu, Wenqing

    2017-08-01

    As valuable resources for incubating firms, knowledge resources have received gradually increasing attention from all types of business incubators, and business incubators use a variety of knowledge services to stimulate rapid growth in incubating firms. Based on previous research, we generalize the knowledge transfer and knowledge networking services of two main forms of knowledge services and further divide knowledge transfer services into knowledge depth services and knowledge breadth services. Then, we construct the business incubators' knowledge supernetwork model, describe the evolution mechanism among heterogeneous agents and utilize a simulation to explore the performance variance of different business incubators' knowledge services. The simulation results show that knowledge stock increases faster when business incubators are able to provide knowledge services to more incubating firms and that the degree of discrepancy in the knowledge stock increases during the process of knowledge growth. Further, knowledge transfer services lead to greater differences in the knowledge structure, while knowledge networking services lead to smaller differences. Regarding the two types of knowledge transfer services, knowledge depth services are more conducive to knowledge growth than knowledge breadth services, but knowledge depth services lead to greater gaps in knowledge stocks and greater differences in knowledge structures. Overall, it is optimal for business incubators to select a single knowledge service or portfolio strategy based on the amount of time and energy expended on the two types of knowledge services.

  14. Mind the wind: microclimate effects on incubation effort of an arctic seabird.

    PubMed

    Høyvik Hilde, Christoffer; Pélabon, Christophe; Guéry, Loreleï; Gabrielsen, Geir Wing; Descamps, Sébastien

    2016-04-01

    The energetic costs of reproduction in birds strongly depend on the climate experienced during incubation. Climate change and increasing frequency of extreme weather events may severely affect these costs, especially for species incubating in extreme environments. In this 3-year study, we used an experimental approach to investigate the effects of microclimate and nest shelter on the incubation effort of female common eiders (Somateria mollissima) in a wild Arctic population. We added artificial shelters to a random selection of nesting females, and compared incubation effort, measured as body mass loss during incubation, between females with and without shelter. Nonsheltered females had a higher incubation effort than females with artificial shelters. In nonsheltered females, higher wind speeds increased the incubation effort, while artificially sheltered females experienced no effect of wind. Although increasing ambient temperatures tended to decrease incubation effort, this effect was negligible in the absence of wind. Humidity had no marked effect on incubation effort. This study clearly displays the direct effect of a climatic variable on an important aspect of avian life-history. By showing that increasing wind speed counteracts the energetic benefits of a rising ambient temperature, we were able to demonstrate that a climatic variable other than temperature may also affect wild populations and need to be taken into account when predicting the effects of climate change.

  15. Ecological, evolutionary, and conservation implications of incubation temperature-dependent phenotypes in birds.

    PubMed

    DuRant, Sarah E; Hopkins, William A; Hepp, Gary R; Walters, J R

    2013-05-01

    Incubation is a vital component of reproduction and parental care in birds. Maintaining temperatures within a narrow range is necessary for embryonic development and hatching of young, and exposure to both high and low temperatures can be lethal to embryos. Although it is widely recognized that temperature is important for hatching success, little is known about how variation in incubation temperature influences the post-hatching phenotypes of avian offspring. However, among reptiles it is well known that incubation temperature affects many phenotypic traits of offspring with implications for their future survival and reproduction. Although most birds, unlike reptiles, physically incubate their eggs, and thus behaviourally control nest temperatures, variation in temperature that influences embryonic development still occurs among nests within a population. Recent research in birds has primarily been limited to populations of megapodes and waterfowl; in each group, incubation temperature has substantial effects on hatchling phenotypic traits important for future development, survival, and reproduction. Such observations suggest that incubation temperature (and incubation behaviours of parents) is an important but underappreciated parental effect in birds and may represent a selective force instrumental in shaping avian reproductive ecology and life-history traits. However, much more research is needed to understand how pervasive phenotypic effects of incubation temperature are among birds, the sources of variation in incubation temperature, and how effects on phenotype arise. Such insights will not only provide foundational information regarding avian evolution and ecology, but also contribute to avian conservation. © 2013 The Authors. Biological Reviews © 2013 Cambridge Philosophical Society.

  16. Recent updates on incubation of drug craving: a mini-review.

    PubMed

    Li, Xuan; Caprioli, Daniele; Marchant, Nathan J

    2015-09-01

    Cue-induced drug craving progressively increases after prolonged withdrawal from drug self-administration in laboratory animals, a behavioral phenomenon termed 'incubation of drug craving.' Studies over the years have revealed several important neural mechanisms contributing to incubation of drug craving. In this mini-review, we first discuss three excellent Addiction Biology publications on incubation of drug craving in both human and laboratory animals. We then review several key publications from the past year on behavioral and mechanistic findings related to incubation of drug craving. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

  17. Incubation behaviour of Greater Scaup Aythya marila on the Yukon-Kuskokwim Delta, Alaska

    USGS Publications Warehouse

    Flint, Paul L.

    2003-01-01

    This study examined the incubation behaviour of Greater Scaup Aythya marila on the Yukon-Kuskokwim Delta, Alaska. The goals of the study were to describe the incubation behaviour of Greater Scaup in terms of incubation constancy, recess frequency and recess length. The use of endogenous reserves by Greater Scaup was examined by determining weight loss over the incubation period. Further, intraspecific variation in incubation constancy was considered in terms of hypotheses regarding timing of reproduction. Constancy (% time on nest) averaged 59% during egg laying and increased to 83% during incubation. Patterns of daily incubation constancy varied among females, with no overall trend. Females took an average of 4.3 recesses per day, with an average length of 57 minutes. Body mass declined by 6.4 g day-1 and females initiating nests later tended to be lighter. These data suggest that while Greater Scaup utilise some stored reserves during incubation, they probably meet most of their energetic demands by foraging during incubation recesses. These data are not consistent with the hypothesis that females are initiating nests before adequate forage is available in the spring to meet the demands of egg production and maintenance. Thus, the observed delay in the onset of nesting by Greater Scaup, relative to other sympatric nesting species, does not appear to be related to inadequate forage to meet nutritional requirements.

  18. Noise at the neonatal intensive care unit and inside the incubator.

    PubMed

    Pinheiro, Eliana Moreira; Guinsburg, Ruth; Nabuco, Marco Antonio de Araujo; Kakehashi, Tereza Yoshiko

    2011-01-01

    The goal was to identify sound pressure level (SPL) at the neonatal intensive care unit (NICU) and inside the incubator of a teaching hospital of a public university from São Paulo - SP, Brazil. SPL inside the NICU and the incubator were measured using four dosimeters in January/2010. SPL at the NICU varied from 52.6 dBA to 80.4 dBA and inside the incubator, from 45.4 dBA to 79.1 dBA. SPL both at the NICU and inside the incubator are above the recommended values, but levels were higher at the NICU than inside the incubator. Although there are some specific factors related to SPL inside the incubator, the NICU and incubator acoustic features present a system: an increase/decrease in SPL at the NICU usually tends to increase/decrease SPL inside the incubator. The study points to the need for simultaneous monitoring of SPL at the NICU and inside the incubator.

  19. Impact of incubator type on the yield of in vitro produced bovine blastocysts.

    PubMed

    Avery, B; Greve, T

    1992-01-01

    Because of suboptimal in vitro production of bovine blastocysts a new incubator model (Mini) was tested against the traditional (Heraeus). The difference between their properties seemed only to be the volume of the incubator space. No difference was noted between the CO2 or the temperature, but the data clearly showed a highly significant increase of the blastocyst rates, 6% versus 51% in the Heraeus and the Mini incubator, respectively, calculated as blastocysts per cleaved embryos. It was concluded that the incubator type or model may be a very important part of the in vitro production of bovine embryos, although we were not able to pin point specific causes for this difference.

  20. Influence of algal bloom degradation on nutrient release at the sediment-water interface in Lake Taihu, China.

    PubMed

    Zhu, Mengyuan; Zhu, Guangwei; Zhao, Linlin; Yao, Xin; Zhang, Yunlin; Gao, Guang; Qin, Boqiang

    2013-03-01

    Algal bloom could drastically influence the nutrient cycling in lakes. To understand how the internal nutrient release responds to algal bloom decay, water and sediment columns were sampled at 22 sites from four distinct regions of China's eutrophic Lake Taihu and incubated in the laboratory to examine the influence of massive algal bloom decay on nutrient release from sediment. The column experiment involved three treatments: (1) water and sediment (WS); (2) water and algal bloom (WA); and (3) water, sediment, and algal bloom (WSA). Concentrations of dissolved oxygen (DO), total nitrogen (TN), total phosphorus (TP), ammonium (NH (4) (+) -N), and orthophosphate (PO (4) (3-) -P) were recorded during incubation. The decay of algal material caused a more rapid decrease in DO than in the algae-free controls and led to significant increases in NH (4) (+) -N and PO (4) (3-) -P in the water. The presence of algae during the incubation had a regionally variable effect on sediment nutrient profiles. In the absence of decaying algae (treatment WS), sediment nutrient concentrations decreased during the incubation. In the presence of blooms (WSA), sediments from the river mouth released P to the overlying water, while sediments from other regions absorbed surplus P from the water. This experiment showed that large-scale algal decay will dramatically affect nutrient cycling at the sediment-water interface and would potentially transfer the function of sediment as "container" or "supplier" in Taihu, although oxygen exchange with atmosphere in lake water was stronger than in columns. The magnitude of the effect depends on the physical-chemical character of the sediments.

  1. After The Storm: Assessing The Content, Transformation, And Fate Of Nitrogen In Floodplain Sediments In Aquatic Ecosystems

    NASA Astrophysics Data System (ADS)

    Krieg, C.; Inamdar, S. P.; Kan, J.; Vargas, R.

    2016-12-01

    Large storms can erode, transport, and deposit large amounts of sediment and particulate organic matter (POM) within the fluvial network. Floodplain sediments following these events can contain large amounts of particulate organic C (POC) and N (PN) forms. The C and N processing at these sites could have a significant impact on aquatic nutrient cycling, water quality, and global C and N budgets. The fate of deposited PN and the role the storm deposits play in C and N processing is still poorly understood and warrants further investigation. This study investigates the role of floodplain sediments as sites of N sequestration or leaching. This was achieved through the use of a laboratory sediment incubation experiment coupled with in-situ field monitoring. The incubation experiment investigated the response of watershed sediments to contrasting moisture regimes and the implications this has on the fate of N. Sediment samples were collected from a range of potential sources in a 1-2 nd order stream within a forested catchment of the Piedmont region of Maryland. The potential sediment sources included: Stream Bank, Stream Bed, Forest Floor Humus, Upland Mineral A horizon, and Floodplain Deposits. The moisture regime included continuously moist and wet-dry cycles and were achieved through the application of different volumes of water to the sediment columns. The incubation was performed for a period of 60 days. Sediment/soil chemistry, pore-water chemistry, and microbial community diversity were monitored for the various sediment treatments. It is expected that the sediments experiencing the wet-dry cycles will episodically leach N at a higher rate than the sediments that remain continuously moist, and that the floodplain sediments will release substantial N in both scenarios. These insights are critical as climate-change predictions indicate that both intensity and frequency of large storms are expected to increase in the Northeastern US, thus directly impacting the

  2. Oxygenation of anoxic sediments triggers hatching of zooplankton eggs.

    PubMed

    Broman, Elias; Brüsin, Martin; Dopson, Mark; Hylander, Samuel

    2015-10-22

    Many coastal marine systems have extensive areas with anoxic sediments and it is not well known how these conditions affect the benthic-pelagic coupling. Zooplankton lay their eggs in the pelagic zone, and some sink and lie dormant in the sediment, before hatched zooplankton return to the water column. In this study, we investigated how oxygenation of long-term anoxic sediments affects the hatching frequency of dormant zooplankton eggs. Anoxic sediments from the brackish Baltic Sea were sampled and incubated for 26 days with constant aeration whereby, the sediment surface and the overlying water were turned oxic. Newly hatched rotifers and copepod nauplii (juveniles) were observed after 5 and 8 days, respectively. Approximately 1.5 × 10(5) nauplii m(-2) emerged from sediment turned oxic compared with 0.02 × 10(5) m(-2) from controls maintained anoxic. This study demonstrated that re-oxygenation of anoxic sediments activated a large pool of buried zooplankton eggs, strengthening the benthic-pelagic coupling of the system. Modelling of the studied anoxic zone suggested that a substantial part of the pelagic copepod population can derive from hatching of dormant eggs. We suggest that this process should be included in future studies to understand population dynamics and carbon flows in marine pelagic systems.

  3. Oxygenation of anoxic sediments triggers hatching of zooplankton eggs

    PubMed Central

    Broman, Elias; Brüsin, Martin; Dopson, Mark; Hylander, Samuel

    2015-01-01

    Many coastal marine systems have extensive areas with anoxic sediments and it is not well known how these conditions affect the benthic–pelagic coupling. Zooplankton lay their eggs in the pelagic zone, and some sink and lie dormant in the sediment, before hatched zooplankton return to the water column. In this study, we investigated how oxygenation of long-term anoxic sediments affects the hatching frequency of dormant zooplankton eggs. Anoxic sediments from the brackish Baltic Sea were sampled and incubated for 26 days with constant aeration whereby, the sediment surface and the overlying water were turned oxic. Newly hatched rotifers and copepod nauplii (juveniles) were observed after 5 and 8 days, respectively. Approximately 1.5 × 105 nauplii m−2 emerged from sediment turned oxic compared with 0.02 × 105 m−2 from controls maintained anoxic. This study demonstrated that re-oxygenation of anoxic sediments activated a large pool of buried zooplankton eggs, strengthening the benthic–pelagic coupling of the system. Modelling of the studied anoxic zone suggested that a substantial part of the pelagic copepod population can derive from hatching of dormant eggs. We suggest that this process should be included in future studies to understand population dynamics and carbon flows in marine pelagic systems. PMID:26468249

  4. Paonia Reservoir Sediment Management

    NASA Astrophysics Data System (ADS)

    Kimbrel, S.; Collins, K.; Williams, C.

    2014-12-01

    Paonia Dam and Reservoir are located on Muddy Creek, a tributary of the North Fork Gunnison River in western Colorado. Since dam closure in 1962, the 2002 survey estimates an annual sedimentation rate of 153,000 m3/y, resulting in a 25% loss of total reservoir capacity. Long before sediment levels completely fill the reservoir, the outlet works have recently plugged with sediment and debris, adversely impacting operations, and emphasizing the urgency of formulating an effective sediment management plan. Starting in 2010-2011, operations were changed to lower the reservoir and flush sediment through the outlet works in early spring before filling the pool for irrigation. Even though the flushing strategy through the long, narrow reservoir (~5 km long and 0.3 km wide) has prevented outlet works plugging, a long term plan is needed to manage inflowing and deposited sediment more efficiently. Reclamation's Sedimentation and River Hydraulics Group is leading an effort to study the past and current sediment issues at Paonia Dam and Reservoir, evaluate feasible sediment management alternatives, and formulate a plan for future operations and monitoring. The study is building on previously collected data and the existing knowledge base to develop a comprehensive, sustainable sediment management plan. The study is being executed in three phases: Phase 1 consisted of an initial site visit to map and sample existing reservoir bottom sediments, a preliminary site evaluation upstream and downstream of the dam, and establishment of time-lapse photo sites and taking initial ground-based photos. Phase 2 includes a bathymetric survey of entire reservoir and 11 km of the river downstream of the dam, continuous suspended sediment monitoring upstream and downstream of the reservoir, and collection of additional core samples of reservoir bottom sediments. Phase 3 involves the evaluation of current and past operations and sediment management practices, evaluate feasible sediment

  5. A meta-analysis of experiments linking incubation conditions with subsequent leg weakness in broiler chickens.

    PubMed

    Groves, Peter J; Muir, Wendy I

    2014-01-01

    A series of incubation and broiler growth studies were conducted using one strain of broiler chicken (fast feathering dam line) observing incubation effects on femoral bone ash % at hatch and the ability of the bird to remain standing at 6 weeks of age (Latency-To-Lie). Egg shell temperatures during incubation were consistently recorded. Parsimonious models were developed across eight studies using stepwise multiple linear regression of egg shell temperatures over 3-day periods and both bone ash at hatch and Latency-To-Lie. A model for bone ash at hatch explained 70% of the variation in this factor and revealed an association with lower egg shell temperatures during days 4-6 and 13-15 and higher egg shell temperatures during days 16-18 of incubation. Bone ash at hatch and subsequent Latency-To-Lie were positively correlated (r = 0.57, P<0.05). A model described 66% of the variation Latency-To-Lie showing significant association of the interaction of femoral ash at hatch and lower average egg shell temperatures over the first 15 days of incubation. Lower egg shell temperature in the early to mid incubation process (days 1-15) and higher egg shell temperatures at a later stage (days 16-18) will both tend to delay the hatch time of incubating eggs. Incubation profiles that resulted in later hatching chicks produced birds which could remain standing for a longer time at 6 weeks of age. This supports a contention that the effects of incubation observed in many studies may in fact relate more to earlier hatching and longer sojourn of the hatched chick in the final stage incubator. The implication of these outcomes are that the optimum egg shell temperature during incubation for broiler leg strength development may be lower than that regarded as ideal (37.8°C) for maximum hatchability and chick growth.

  6. Effect of intensity of eggshell pigment and illuminated incubation on hatchability of brown eggs.

    PubMed

    Shafey, T M; Al-Batshan, H A; Ghannam, M M; Al-Ayed, M S

    2005-04-01

    The effects of intensity of brown eggshell pigment (light (LBP), medium (MBP) and dark (DBP)) and light intensity during incubation (low and high, 900 to 1380 and 1430 to 2080 lux, respectively) on eggshell characteristics, embryonic growth, hatchability traits, chick hatching weight and hatching time were investigated using eggs from a meat-type breeder (Hybro) flock at 32, 36 and 41 weeks of age in three trials. With eggs of similar weights the intensity of brown pigment was not associated with eggshell weight and thickness, and did not influence embryo weight and egg weight loss during incubation. The shade of brown pigment of eggs laid by young hens influenced the percentage hatchability (HP) of eggs incubated under light. Illuminated incubation improved HP of LBP eggs (compared with MBP and DBP eggs) from 32- and 36-week-old hens, but had no significant effect on HP of eggs from 41-week-old hens. Light intensity during incubation did not influence egg weight loss. High intensity of light during incubation reduced HP and increased early death percentage (EDP) in the LBP and MBP groups, and did not influence HP and EDP in the DBP group. Brown eggshell pigment and intensity of light during incubation did not influence hatching time. It is concluded that the shade of brown pigment, intensity of light during incubation and age of the breeder hens influenced the hatchability performance of embryos from brown eggs. Light during incubation improved the hatchability of embryos in light brown eggs laid by young hens and the shade of brown pigment of eggs laid by older hens did not influence hatchability under illuminated incubation. High intensity of light during incubation reduced hatchability of light and medium brown eggs, but not the dark brown eggs.

  7. A Meta-Analysis of Experiments Linking Incubation Conditions with Subsequent Leg Weakness in Broiler Chickens

    PubMed Central

    Groves, Peter J.; Muir, Wendy I.

    2014-01-01

    A series of incubation and broiler growth studies were conducted using one strain of broiler chicken (fast feathering dam line) observing incubation effects on femoral bone ash % at hatch and the ability of the bird to remain standing at 6 weeks of age (Latency-To-Lie). Egg shell temperatures during incubation were consistently recorded. Parsimonious models were developed across eight studies using stepwise multiple linear regression of egg shell temperatures over 3-day periods and both bone ash at hatch and Latency-To-Lie. A model for bone ash at hatch explained 70% of the variation in this factor and revealed an association with lower egg shell temperatures during days 4–6 and 13–15 and higher egg shell temperatures during days 16–18 of incubation. Bone ash at hatch and subsequent Latency-To-Lie were positively correlated (r = 0.57, P<0.05). A model described 66% of the variation Latency-To-Lie showing significant association of the interaction of femoral ash at hatch and lower average egg shell temperatures over the first 15 days of incubation. Lower egg shell temperature in the early to mid incubation process (days 1–15) and higher egg shell temperatures at a later stage (days 16–18) will both tend to delay the hatch time of incubating eggs. Incubation profiles that resulted in later hatching chicks produced birds which could remain standing for a longer time at 6 weeks of age. This supports a contention that the effects of incubation observed in many studies may in fact relate more to earlier hatching and longer sojourn of the hatched chick in the final stage incubator. The implication of these outcomes are that the optimum egg shell temperature during incubation for broiler leg strength development may be lower than that regarded as ideal (37.8°C) for maximum hatchability and chick growth. PMID:25054636

  8. Anaerobic oxidation of methane in sediments of two boreal lakes

    NASA Astrophysics Data System (ADS)

    Rissanen, Antti J.; Karvinen, Anu; Nykänen, Hannu; Mpamah, Promise; Peura, Sari; Tiirola, Marja; Kankaala, Paula

    2014-05-01

    Anaerobic oxidation of methane (AOM) is a considerable sink for methane (CH4) in marine systems, but very little is known about the occurrence and importance of the process in freshwater systems. In addition, much about the microbial communities involved in AOM is unclear. AOM coupled with sulfate reduction is the dominant AOM process in marine systems but the scarce existing data suggest that, in freshwater systems, AOM coupled with reduction of alternative electron acceptors (nitrate/nitrite, manganese, iron) is more important. In this study, potential for AOM coupled with metal reduction was studied in boreal lake sediments. Slurries of sediment samples collected from two sites in southeastern Finland, i.e. from Lake Orivesi, Heposelkä, an vegetated littoral site, dominated by Phragmites australis (Sample Sa, sediment layer 0 - 25 cm) and from the profundal zone of a mesotrophic Lake Ätäskö (Aa, 0 - 10 cm; Ab, 10 - 30 cm; Ac, 90 - 130 cm), were incubated in laboratory in anaerobic conditions at in situ temperatures for up to 5 months. The samples were amended either 1) with 13CH4, 2) 13CH4 + manganese(II) oxide (MnO) or 3) 13CH4 + iron(III) hydroxide (Fe(OH)3), and the processes were measured by following the 13C transfer to the carbon dioxide (CO2) pool and by concentration measurements of CH4 and CO2. Changes in microbial communities were studied from DNA extracted from sediment samples before and after incubation period by next-generation sequencing (Ion Torrent) of polymerase chain reaction (PCR) - amplified bacterial and archaeal 16S rRNA and methyl coenzyme-M reductase gene (mcrA) amplicons. Increase in 13C of CO2 gas confirmed that AOM took place in sediments of both study lakes. In general, 13CO2 - production was significant both at the beginning (0 - 21 days) and at the end (84 - 151 days) of incubation period. Potential AOM rates (calculated based on 13CO2 - production) varied considerably and were much lower in deep sediment (Sample Ac), 0.1 - 0

  9. Mechanisms of damage to corals exposed to sedimentation.

    PubMed

    Weber, Miriam; de Beer, Dirk; Lott, Christian; Polerecky, Lubos; Kohls, Katharina; Abed, Raeid M M; Ferdelman, Timothy G; Fabricius, Katharina E

    2012-06-12

    We investigated the mechanisms leading to rapid death of corals when exposed to runoff and resuspended sediments, postulating that the killing was microbially mediated. Microsensor measurements were conducted in mesocosm experiments and in naturally accumulated sediment on corals. In organic-rich, but not in organic-poor sediment, pH and oxygen started to decrease as soon as the sediment accumulated on the coral. Organic-rich sediments caused tissue degradation within 1 d, whereas organic-poor sediments had no effect after 6 d. In the harmful organic-rich sediment, hydrogen sulfide concentrations were low initially but increased progressively because of the degradation of coral mucus and dead tissue. Dark incubations of corals showed that separate exposures to darkness, anoxia, and low pH did not cause mortality within 4 d. However, the combination of anoxia and low pH led to colony death within 24 h. When hydrogen sulfide was added after 12 h of anoxia and low pH, colonies died after an additional 3 h. We suggest that sedimentation kills corals through microbial processes triggered by the organic matter in the sediments, namely respiration and presumably fermentation and desulfurylation of products from tissue degradation. First, increased microbial respiration results in reduced O(2) and pH, initiating tissue degradation. Subsequently, the hydrogen sulfide formed by bacterial decomposition of coral tissue and mucus diffuses to the neighboring tissues, accelerating the spread of colony mortality. Our data suggest that the organic enrichment of coastal sediments is a key process in the degradation of coral reefs exposed to terrestrial runoff.

  10. Formation of dimethyl sulfide and methanethiol in anoxic freshwater sediments.

    PubMed

    Lomans, B P; Smolders, A; Intven, L M; Pol, A; Op, D; Van Der Drift, C

    1997-12-01

    Concentrations of volatile organic sulfur compounds (VOSC) were measured in water and sediment columns of ditches in a minerotrophic peatland in The Netherlands. VOSC, with methanethiol (4 to 40 nM) as the major compound, appeared to be mainly of sediment origin. Both VOSC and hydrogen sulfide concentrations decreased dramatically towards the water surface. High methanethiol and high dimethyl sulfide concentrations in the sediment and just above the sediment surface coincided with high concentrations of hydrogen sulfide (correlation factors, r = 0.91 and r = 0.81, respectively). Production and degradation of VOSC were studied in 32 sediment slurries collected from various freshwater systems in The Netherlands. Maximal endogenous methanethiol production rates of the sediments tested (up to 1.44 (mu)mol per liter of sediment slurry (middot) day(sup-1)) were determined after inhibition of methanogenic and sulfate-reducing populations in order to stop VOSC degradation. These experiments showed that the production and degradation of VOSC in sediments are well balanced. Statistical analysis revealed multiple relationships of methanethiol production rates with the combination of methane production rates (indicative of total anaerobic mineralization) and hydrogen sulfide concentrations (r = 0.90) or with the combination of methane production rates and the sulfate/iron ratios in the sediment (r = 0.82). These findings and the observed stimulation of methanethiol formation in sediment slurry incubations in which the hydrogen sulfide concentrations were artificially increased provided strong evidence that the anaerobic methylation of hydrogen sulfide is the main mechanism for VOSC formation in most freshwater systems. Methoxylated aromatic compounds are likely a major source of methyl groups for this methylation of hydrogen sulfide, since they are important degradation products of the abundant biopolymer lignin. Increased sulfate concentrations in several freshwater

  11. Lagrangian Sediment Transport Model

    NASA Astrophysics Data System (ADS)

    Maderych, V.; Brovchenko, I.; Fenical, S.; Shepsis, V.

    2004-12-01

    A new two-dimensional Lagrangian sediment transport model was developed to simulate a wide-range of sediment transport processes, including sediment mobility under combined current and wave action, sediment transport and bed change under wave and currents effects, sediment transport patterns at nearshore coastal and offshore structures, and turbidity and sediment motion during dredging and dredged material placement. The Lagrangian technique was used to simulate transport of sediments, deposition, and re-suspension. The model can be applied to cohesive, non-cohesive, or mixed sediments. The sediment transport is simulated using bathymetry data, bed resistance characteristics, wave height and period, depth-averaged current velocity and bed material type, size and gradation, which vary throughout the model domain.The non-cohesive sediment transport model is based on a solution of two-dimensional mass conservation equations for the bed layer material and 2D equations for movement of sediment fractions either bed load or suspended load. The water column and bottom are divided into a set of layers: water layer, active layer, several active bed layers, and the bed layer. The model also takes into account the effects of armoring and changes in the bed composition. Cohesive sediments move entirely as suspended load in the water layer and sediment transport computations are based on a solution of the two-dimensional mass conservation equations for the bed layer material and two-dimensional equations for movement of sediment as suspended load. The water column and bed, as for non-cohesive sediments, was divided into a set of layers. Following the approach of Van Ledden (2002), the erosion of sediments made up of mud and sand mixtures is non-cohesive if the mud content is below a critical level. Above a critical mud content, the bed behaves cohesively. Deposition fluxes of mud and sand are independent. The sediment concentration in the water and active layer is represented by

  12. Nutrient leaching from sediments according to different oxygen supplying conditions

    NASA Astrophysics Data System (ADS)

    Lee, J.; Park, J. I.; Choi, S. H.; Kim, K.

    2014-12-01

    To estimate the role of sediments controlling the water quality, many studies have adopted nutrient leaching experiments. However, the experiments were mostly performed under air-open condition, which is different from the actual condition at the bottom of fairly stagnant water body. Therefore, the results may not properly reflect the capability of the sediments supplying the nutrients to the water column. In this study, nutrient leaching experiments were conducted using various sediment samples under two different oxygen supplying conditions: one open and the other closed to the air. For this study, 5 sediment samples were collected from lakes and rivers around Kunsan, Korea. Air-closed leaching experiments were carried out using conventional BOD glass bottles (355 mL) without any head spaces. All the experiments were performed at a solid:solution ratio of 1:7.3. Each reactor was incubated at 25 ℃ for 72 hours or 120 hours. The solution was analyzed for pH, DO, Eh, NO3-N, NH4-N, and PO4-P after the incubation. Silt+clay fraction, total nitrogen (TN), total phosphorus (TP), and COD of the sediments showed close correlations with each other. Air-closed condition showed much higher leached concentrations for NH4-N and PO4-P (up to 60 times) than the air-open condition and the concentrations increased with the incubation time. However, the differences were very small in the experiments using sandy sediments (<0.13 mg/L and < 50 ug/L for NH4 and PO4 concentrations, respectively). In general, the leached NH4 and PO4 concentrations from the air-open experiments were not correlated well with the fine fractions due to nitrification and suppression of Fe-oxide reduction in aerobic condition, respectively. Because of this reason, some air-open results showed NO3-N concentrations higher than the concentrations obtained from the air-closed experiments. The experiments closed to air showed NO3-N concentrations substantially decreasing with the incubation time due to

  13. Copper Sediment Toxicity and Partitioning during Oxidation in a Flow-Through Flume.

    PubMed

    Costello, David M; Hammerschmidt, Chad R; Burton, G Allen

    2015-06-02

    The bioavailability of transition metals in sediments often depends on redox conditions in the sediment. We explored how the physicochemistry and toxicity of anoxic Cu-amended sediments changed as they aged (i.e., naturally oxidized) in a flow-through flume. We amended two sediments (Dow and Ocoee) with Cu, incubated the sediments in a flow-through flume, and measured sediment physicochemistry and toxicity over 213 days. As sediments aged, oxygen penetrated sediment to a greater depth, the relative abundance of Fe oxides increased in surface and deep sediments, and the concentration of acid volatile sulfide declined in Ocoee surface sediments. The total pool of Cu in sediments did not change during aging, but porewater Cu, and Cu bound to amorphous Fe oxides decreased while Cu associated with crystalline Fe oxides increased. The dose-response of the epibenthic amphipod Hyalella azteca to sediment total Cu changed over time, with older sediments being less toxic than freshly spiked sediments. We observed a strong dose-response relationship between porewater Cu and H. azteca growth across all sampling periods, and measurable declines in relative growth rates were observed at concentrations below interstitial water criteria established by the U.S. EPA. Further, solid-phase bioavailability models based on AVS and organic carbon were overprotective and poorly predicted toxicity in aged sediments. We suggest that sediment quality criteria for Cu is best established from measurement of Cu in pore water rather than estimating bioavailable Cu from the various solid-phase ligands, which vary temporally and spatially.

  14. Lignin Degradation and Humus Formation in Alluvial Soils and Sediments

    PubMed Central

    Fustec, Eliane; Chauvet, Eric; Gas, Gilbert

    1989-01-01

    The contribution of lignin to the formation of humic compounds was examined in different environments of the terrestrial-aquatic interface in the Garonne River valley in southwestern France. Alluvial soils and submerged or nonsubmerged river and pond sediments containing alder, poplar, or willow [14C-lignin]ligno-celluloses were incubated. After a 49-day incubation period, 10 to 15% of labeled lignins in alluvial soils was recovered as evolved 14CO2. In nonsubmerged sediments, 10% of the applied activity was released as 14CO2, and in submerged sediments, only 5% was released after 60 days of incubation. In the different alluvial soils and sediments, the bulk of residual activity (70 to 85%) remained in the two coarsest-grain fractions (2,000 to 100 and 100 to 50 μm). Only 2 to 6% of the residual activity of these two coarse fractions was recovered as humic and fulvic acids, except in the case of alder [14C-lignin]lignocellulose, which had decomposed in a soil collected beneath alders. In this one 55% of the residual activity was extracted as humic substances from the 2,000- to 100-μm fraction. Humic and fulvic acids represented from 6 to 50% of the residual activity in the finest-grain fractions (50 to 20 and 20 to 0 μm). The highest percentages were obtained in soil collected beneath alders and in submerged pond sediment. The contribution of different groups of microorganisms, as well as nutrients and clay content, may influence humic-substance formation in such environments. Physical stability also may be an important factor for complex microbial activity involved in this process. PMID:16347894

  15. Controlling factors on methanogenesisin the deep sediment of Lake Kinneret

    NASA Astrophysics Data System (ADS)

    Adler, M.; Sivan, O.; Ronen, Z.; Eckert, W.

    2012-04-01

    The main pathways of methane production (methanogenesis) are through fermentation of acetate (acetoclastic methanogenesis) and through CO2 reduction with hydrogen (hydrogenotrophic methanogenesis). In most freshwater environment the dominant pathway is through acetoclastic methanogenesis, while in marine sediments the main pathway is through CO2 reduction. Another minor pathway of methane production is through methylotrophic methanogenesis with noncompetitive substrate like methylamine etc. This study investigates the controlling parameters on methanogenesis in deep lacustrine sediments and their link to methanotrophy process. Our findings suggest that in Lake Kinneret (Israel) sediments (Station A, 38 m depth), methanogenesis is restricted to a zone between 3 and 25 cm depth and ends abruptly. This is based on a model calculation and slurry incubation experiments. Below this zone there is a sink for methane, and sets of geochemical data show that this methane sink is related to anaerobic oxidation of methane (AOM), which is most likely driven by iron reduction rather than sulfate reduction. In order to explore this ending of methanogenesis and its link to the deep AOM; in-situ profiles in the sediments as well as slurry incubation experiments in modified conditions were conducted. Profiles of dissolved organic carbon and acetate show increase in concentrations with depth, suggesting that the ending of methanogenesis is not trivial. Preliminary incubation of sediments from different depths show accumulation of acetate with depth concurrently to lower methane accumulation even with addition of acetate. Considering that the common substrates concentrations increase at this depth, the abrupt absence of methanogenesis is surprising. Different additions to the slurries suggest a link between methane, sulfur and iron at that depth that affects both methanogenesis and the deep AOM process.

  16. Organic Matter Loading Modifies the Microbial Community Responsible for Nitrogen Loss in Estuarine Sediments.

    PubMed

    Babbin, Andrew R; Jayakumar, Amal; Ward, Bess B

    2016-04-01

    Coastal marine sediments, as locations of substantial fixed nitrogen loss, are very important to the nitrogen budget and to the primary productivity of the oceans. Coastal sediment systems are also highly dynamic and subject to periodic natural and anthropogenic organic substrate additions. The response to organic matter by the microbial community involved in nitrogen loss processes was evaluated using mesocosms of Chesapeake Bay sediments. Over the course of a 50-day incubation, rates of anammox and denitrification were measured weekly using (15)N tracer incubations, and samples were collected for genetic analysis. Rates of both nitrogen loss processes and gene abundances associated with them corresponded loosely, probably because heterogeneities in sediments obscured a clear relationship. The rates of denitrification were stimulated more, and the fraction of nitrogen loss attributed to anammox slightly reduced, by the higher organic matter addition. Furthermore, the large organic matter pulse drove a significant and rapid shift in the denitrifier community composition as determined using a nirS microarray, indicating that the diversity of these organisms plays an essential role in responding to anthropogenic inputs. We also suggest that the proportion of nitrogen loss due to anammox in these coastal estuarine sediments may be underestimated due to temporal dynamics as well as from methodological artifacts related to conventional sediment slurry incubation approaches.

  17. Anaerobic versus aerobic degradation of dimethyl sulfide and methanethiol in anoxic freshwater sediments.

    PubMed

    Lomans, B P; den Camp, H J; Pol, A; Vogels, G D

    1999-02-01

    Degradation of dimethyl sulfide and methanethiol in slurries prepared from sediments of minerotrophic peatland ditches were studied under various conditions. Maximal aerobic dimethyl sulfide-degrading capacities (4.95 nmol per ml of sediment slurry. h-1), measured in bottles shaken under an air atmosphere, were 10-fold higher than the maximal anaerobic degrading capacities determined from bottles shaken under N2 or H2 atmosphere (0.37 and 0. 32 nmol per ml of sediment slurry. h-1, respectively). Incubations under experimental conditions which mimic the in situ conditions (i. e., not shaken and with an air headspace), however, revealed that aerobic degradation of dimethyl sulfide and methanethiol in freshwater sediments is low due to oxygen limitation. Inhibition studies with bromoethanesulfonic acid and sodium tungstate demonstrated that the degradation of dimethyl sulfide and methanethiol in these incubations originated mainly from methanogenic activity. Prolonged incubation under a H2 atmosphere resulted in lower dimethyl sulfide degradation rates. Kinetic analysis of the data resulted in apparent Km values (6 to 8 microM) for aerobic dimethyl sulfide degradation which are comparable to those reported for Thiobacillus spp., Hyphomicrobium spp., and other methylotrophs. Apparent Km values determined for anaerobic degradation of dimethyl sulfide (3 to 8 microM) were of the same order of magnitude. The low apparent Km values obtained explain the low dimethyl sulfide and methanethiol concentrations in freshwater sediments that we reported previously. Our observations point to methanogenesis as the major mechanism of dimethyl sulfide and methanethiol consumption in freshwater sediments.

  18. Sediment Budget and Sediment Fingerprinting as Management Strategies to Understand Sediment Contributions to Receiving Waters

    NASA Astrophysics Data System (ADS)

    Gellis, A.; Fitzpatrick, F.; Gorman-Sanisaca, L.

    2015-12-01

    A sound understanding of the sediment sources contributing to the sediment flux and the overall sediment budget of a watershed is key to total maximum daily load (TMDL) management strategies that focus on reducing sediment and sediment-related nutrient loadings to streams. This understanding can be provided by performing complementary sediment-source fingerprinting and sediment-budgeting investigations. The sediment fingerprinting approach quantifies the relative proportion of the potential sediment sources and the delivery of sediment from these sources. Sediment budget approaches provide information on the magnitude and location of the fluxes and the links between sources, sinks, and sediment output. Sediment budget approaches can include field based, photogrammetric, GIS, and modeling approaches to identify the important sources, erosion, and storage areas of sediment within a watershed. Combining sediment budget and sediment fingerprinting approaches provides resource managers with information on where to target mitigation measures that reduce erosion, and sediment delivery. Many watersheds across the U.S. have or are soon implementing TMDL allocations to reduce sediment and nutrient loadings. Streambank erosion is typically not accounted for in statistical, empirical, and process-based models, yet it is a major source of sediment in many watersheds. We present several examples of sediment budget and sediment fingerprinting studies from the Chesapeake Bay watershed and the Driftless Area, Wisconsin where information on loading of streambank sediment has been used (successfully) to shape upland and stream corridor management practices.

  19. A Study of Business Incubators: Models, Best Practices, and Recommendations for NASA and Florida

    NASA Technical Reports Server (NTRS)

    1997-01-01

    This study was conducted to provide NASA-Kennedy Space Center with information and recommendations to support establishing one or more technology-based business incubators In Florida. The study involved assembling information about incubators: why they succeed, why they fail, how they are organized, and what services they provide. Consequently, this study focuses on widely-recognized "best practices," needed to establish successful technology- based business incubators. The findings are used to optimize the design and implementation of one or more technology-based business incubators to be established in Florida. Recommendations reflect both the essential characteristics of successful incubators and the optimal business demographics in Florida. Appendix A provides a fuller description of the objectives of the study. Technology-based business incubators are an increasing catalyst of new business development across the USi Incubators focus on providing entrepreneurs and small start-up firms with a wide array of support services necessary to bring forth new products and processes based on technologies developed in the nation's federal and private laboratories and universities. Appendix B provides extensive discussion of findings relative to technology- based business incubators.

  20. Effects of incubation temperatures on embryonic and larval survival in rainbow trout, Oncorhynchus mykiss

    USDA-ARS?s Scientific Manuscript database

    Incubation temperature is commonly used by hatcheries to manipulate hatch date in salmonids including rainbow trout (Oncorhynchus mykiss). Target dates for hatching often change during the incubation period and require a sudden adjustment in temperature. Although there are many studies charac...

  1. A Conceptual Development Framework for Management and Leadership Learning in the UK Incubator Sector

    ERIC Educational Resources Information Center

    D. Hannon, Paul

    2003-01-01

    Focuses attention upon a recent phenomenon promoted by public sector policy and government funding and adopted within the private sector as a vehicle for wealth creation, where wealth can mean the development of different forms of capital such as financial, intellectual and social. Incubators and incubation programmes have established themselves…

  2. Tenant Recruitment and Support Processes in Sustainability-Profiled Business Incubators

    ERIC Educational Resources Information Center

    Bank, Natasha; Kanda, Wisdom

    2016-01-01

    Recruitment and support processes in sustainability-profiled incubators have received little research attention. The article addresses this knowledge gap in an empirical investigation of three sustainability-oriented incubators in Sweden, Finland and Germany. The data are based on interviews with managers, stakeholders and tenants in Green Tech…

  3. A rapid and cost effective method for soil carbon mineralization under static incubations

    USDA-ARS?s Scientific Manuscript database

    Soil incubations with subsequent measurement of carbon dioxide (CO2) evolved are common soil assays to estimate C mineralization rates and active organic C. Two common methods used to detect CO2 in laboratory incubations are gas chromatography (GC) and alkali absorption followed by titration (NaOH)...

  4. A rapid and cost effective method for soil carbon mineralization under static incubations

    USDA-ARS?s Scientific Manuscript database

    Soil incubations with subsequent determination of carbon dioxide (CO2) are common soil assays used to estimate C mineralization rates and active organic C pools. Two common methods used to detect CO2 in laboratory incubations are gas chromatography (GC) and alkali absorption followed by titration (...

  5. Experimental evidence that keeping eggs dry is a mechanism for the antimicrobial effects of avian incubation

    NASA Astrophysics Data System (ADS)

    D'Alba, Liliana; Oborn, Allison; Shawkey, Matthew D.

    2010-12-01

    Avian incubation dramatically reduces the abundance and diversity of microbial assemblages on eggshells, and this effect has been hypothesized as an adaptive explanation for partial incubation, the bouts of incubation that some birds perform during the egg-laying period. However, the mechanisms for these antimicrobial effects are largely unknown. In this study, we hypothesized that microbial inhibition is partly achieved through removal of liquid water, which generally enhances microbial growth, from eggshells, and experimentally tested this hypothesis in two ways. First, we placed the first- and second-laid eggs of tree swallow ( Tachycineta bicolor) clutches in unincubated holding nests with either ambient or increased water on eggshells. Second, we added water to eggshells in naturally partially incubated nests. We compared microbial growth on shells during a 5-day experimental period and found that, as predicted, both unincubated groups had higher microbial growth than naturally partially incubated controls, and that only in the absence of incubation did wetted eggs have higher microbial growth than unwetted eggs. Thus, we have shown that water increases microbial growth on eggshells and that incubation nullifies these effects, suggesting that removal of water from egg surfaces is one proximate mechanism for the antimicrobial effects of incubation.

  6. 78 FR 54911 - Certain Thermal Support Devices for Infants, Infant Incubators, Infant Warmers and Components...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-06

    ... COMMISSION Certain Thermal Support Devices for Infants, Infant Incubators, Infant Warmers and Components.... International Trade Commission has received a complaint entitled Certain Thermal Support Devices for Infants... importation of certain thermal support devices for infants, infant incubators, infant warmers and components...

  7. Effects of caffeine supplementation in post-thaw human semen over different incubation periods.

    PubMed

    Pariz, J R; Hallak, J

    2016-11-01

    This study aimed to evaluate the effects of caffeine supplementation in post-cryopreservation human semen over different incubation periods. After collection by masturbation, 17 semen samples were analysed according to World Health Organization criteria, processed and cryopreserved with TEST-yolk buffer (1 : 1) in liquid nitrogen. After a thawing protocol, samples were incubated with 2 mm of caffeine for 0, 5, 15, 30 or 60 min, followed by analysis of motility and mitochondrial activity using 3,3'-diaminobenzidine (DAB). Mean variance analysis was performed, and P < 0.05 was the adopted significance threshold. Samples incubated for 15 min showed increased progressive motility compared to other periods of incubation, as well as a reduced percentage of immotile spermatozoa (P < 0.05). In samples incubated for 5 min, increased mitochondrial activity above 50% was observed (DABI and DABII). Although cryosurvival rates were low after the cryopreservation process, incubation with caffeine was associated with an increase in sperm motility, particularly 15-min incubation, suggesting that incubation with caffeine can be an important tool in patients with worsening seminal quality undergoing infertility treatment.

  8. Microbial infection affects egg viability and incubation behavior in a tropical passerine.

    Treesearch

    Mark I. Cook; Steven R. Beissinger; Gary A. Toranzos; Roberto A. Arendt Rodriguez

    2004-01-01

    Many avian species initiate incubation before clutch completion, which causes eggs to hatch asynchronously. This influences brood competitive dynamics and often results in nestling mortality. The prevailing hypotheses contend that parents incubate early because asynchronous hatching provides fitness benefits to parents or surviving offspring. An alternative idea is...

  9. Effect of Increased Egg Stocking Density in Existing and Experimental Catfish Incubators

    USDA-ARS?s Scientific Manuscript database

    Channel catfish egg masses are typically incubated in stationary wire mesh baskets suspended across metal troughs with flow-through water that is agitated and circulated between the baskets and around the eggs with rotating paddles. A limiting factor in the successful incubation of channel catfish e...

  10. The Contribution of University Business Incubators to New Knowledge-based Ventures: Evidence from Italy.

    ERIC Educational Resources Information Center

    Grimaldi, Rosa; Grandi, Alessandro

    2001-01-01

    University business incubators give businesses access to labs and equipment, scientific-technical knowledge, networks, and reputation. A study of incubators in Italy shows they do not resolve inadequate funding or lack of management and financial skills. However, the networking capacity can offset these problems. (Contains 25 notes/references.)…

  11. A new view of avian life-history evolution tested on an incubation paradox.

    PubMed Central

    Martin, Thomas E

    2002-01-01

    Viewing life-history evolution in birds based on an age-specific mortality framework can explain broad life-history patterns, including the long incubation periods in southern latitudes documented here. I show that incubation periods of species that are matched phylogenetically and ecologically between Argentina and Arizona are longer in Argentina. Long incubation periods have mystified scientists because they increase the accumulated risk of time-dependent mortality to young without providing a clear benefit. I hypothesize that parents of species with low adult mortality accept increased risk of mortality to their young from longer incubation if this allows reduced risk of mortality to themselves. During incubation, songbird parents can reduce risk of mortality to themselves by reducing nest attentiveness (percentage of time on the nest). Here I show that parents of species with lower adult mortality exhibit reduced nest attentiveness and that lower attentiveness is associated with longer incubation periods. However, the incubation period is also modified by juvenile mortality. Clutch size variation is also strongly correlated with age-specific mortality. Ultimately, adult and juvenile mortality explain variation in incubation and other life-history traits better than the historical paradigm. PMID:11839200

  12. Accelerating Success: A Design Guide for Starting a New School Incubator

    ERIC Educational Resources Information Center

    Lake, Robin; Rainey, Lydia

    2004-01-01

    Incubators are organizations that aim to decrease the learning curve for new schools and increase the likelihood that promising school plans will succeed. Incubators offer communities an innovative new way to support locally-initiated school designs. This design guide is intended to help people who are interested in starting a school incubator…

  13. Does incubation temperature fluctuation influence hatchling phenotypes in reptiles? A test using parthenogenetic geckos.

    PubMed

    Andrewartha, Sarah J; Mitchell, Nicola J; Frappell, Peter B

    2010-01-01

    Many lineages of parthenogenetic organisms have persisted through significant environmental change despite the constraints imposed by their fixed genotype and limited evolutionary potential. The ability of parthenogens to occur sympatrically with sexual relatives may in part be due to phenotypic plasticity in their responses to their environment, especially with respect to incubation temperature--a maternally selected trait. Here we measured the incubation temperatures selected by two lineages of triploid parthenogenic geckos in the Heteronotia binoei complex by allowing them to deposit clutches along a thermal gradient. The average nest temperature selected was 28.4 degrees C, with no significant differences between parthenogenic races or individual clones. To investigate the effect of nest-temperature variability on physiological and morphological traits, we incubated eggs from different races at one of four incubation regimes (32 degrees +/- 0 degrees, +/- 3 degrees , +/- 5 degrees , or +/- 9 degrees C). Embryos incubated at constant 32 degrees C developed faster than embryos reared under increasing extremes of diel temperature fluctuation (+/- 3 degrees , +/- 5 degrees C), and incubation at 32 degrees +/- 9 degrees C was unsuccessful. Incubation regime had no effect on the body size, preferred substrate temperature, or mass-specific .V(O2) of hatchlings. However, parthenogenic race had a significant effect on egg mass, tail length, snout-to-vent length, total length, and .V(O2) . We conclude that developmental traits are strongly influenced by clonal genotypes in this parthenogenic complex but are well buffered against fluctuations in incubation temperature.

  14. The Contribution of University Business Incubators to New Knowledge-based Ventures: Evidence from Italy.

    ERIC Educational Resources Information Center

    Grimaldi, Rosa; Grandi, Alessandro

    2001-01-01

    University business incubators give businesses access to labs and equipment, scientific-technical knowledge, networks, and reputation. A study of incubators in Italy shows they do not resolve inadequate funding or lack of management and financial skills. However, the networking capacity can offset these problems. (Contains 25 notes/references.)…

  15. Tenant Recruitment and Support Processes in Sustainability-Profiled Business Incubators

    ERIC Educational Resources Information Center

    Bank, Natasha; Kanda, Wisdom

    2016-01-01

    Recruitment and support processes in sustainability-profiled incubators have received little research attention. The article addresses this knowledge gap in an empirical investigation of three sustainability-oriented incubators in Sweden, Finland and Germany. The data are based on interviews with managers, stakeholders and tenants in Green Tech…

  16. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs.

    PubMed

    Shawkey, Matthew D; Firestone, Mary K; Brodie, Eoin L; Beissinger, Steven R

    2009-01-01

    Microbial infection is a critical source of mortality for early life stages of oviparous vertebrates, but parental defenses against infection are less well known. Avian incubation has been hypothesized to reduce the risk of trans-shell infection by limiting microbial growth of pathogenic bacteria on eggshells, while enhancing growth of commensal or beneficial bacteria that inhibit or competitively exclude pathogens. We tested this hypothesis by comparing bacterial assemblages on naturally incubated and experimentally unincubated eggs at laying and late incubation using a universal 16S rRNA microarray containing probes for over 8000 bacterial taxa. Before treatment, bacterial assemblages on individual eggs from both treatment groups were dissimilar to one another, as measured by clustering in non-metric dimensional scaling (NMDS) ordination space. After treatment, assemblages of unincubated eggs were similar to one another, but those of incubated eggs were not. Furthermore, assemblages of unincubated eggs were characterized by high abundance of six indicator species while incubated eggs had no indicator species. Bacterial taxon richness remained static on incubated eggs, but increased significantly on unincubated eggs, especially in several families of Gram-negative bacteria. The relative abundance of individual bacterial taxa did not change on incubated eggs, but that of 82 bacterial taxa, including some known to infect the interior of eggs, increased on unincubated eggs. Thus, incubation inhibits all of the relatively few bacteria that grow on eggshells, and does not appear to promote growth of any bacteria.

  17. Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs

    PubMed Central

    Shawkey, Matthew D.; Firestone, Mary K.; Brodie, Eoin L.; Beissinger, Steven R.

    2009-01-01

    Microbial infection is a critical source of mortality for early life stages of oviparous vertebrates, but parental defenses against infection are less well known. Avian incubation has been hypothesized to reduce the risk of trans-shell infection by limiting microbial growth of pathogenic bacteria on eggshells, while enhancing growth of commensal or beneficial bacteria that inhibit or competitively exclude pathogens. We tested this hypothesis by comparing bacterial assemblages on naturally incubated and experimentally unincubated eggs at laying and late incubation using a universal 16S rRNA microarray containing probes for over 8000 bacterial taxa. Before treatment, bacterial assemblages on individual eggs from both treatment groups were dissimilar to one another, as measured by clustering in non-metric dimensional scaling (NMDS) ordination space. After treatment, assemblages of unincubated eggs were similar to one another, but those of incubated eggs were not. Furthermore, assemblages of unincubated eggs were characterized by high abundance of six indicator species while incubated eggs had no indicator species. Bacterial taxon richness remained static on incubated eggs, but increased significantly on unincubated eggs, especially in several families of Gram-negative bacteria. The relative abundance of individual bacterial taxa did not change on incubated eggs, but that of 82 bacterial taxa, including some known to infect the interior of eggs, increased on unincubated eggs. Thus, incubation inhibits all of the relatively few bacteria that grow on eggshells, and does not appear to promote growth of any bacteria. PMID:19225566

  18. Survival and growth of American alligator (Alligator mississippiensis) hatchlings after artificial incubation and repatriation

    USGS Publications Warehouse

    Temsiripong, Y.; Woodward, A.R.; Ross, J.P.; Kubilis, P.S.; Percival, H.F.

    2006-01-01

    Hatchling American Alligators (Alligator mississippiensis) produced from artificially incubated wild eggs were returned to their natal areas (repatriated). We compared artificially incubated and repatriated hatchlings released within and outside the maternal alligator's home range with naturally incubated hatchlings captured and released within the maternal alligator's home range on Lake Apopka, Lake Griffin, and Orange Lake in Florida. We used probability of recapture and total length at approximately nine months after hatching as indices of survival and growth rates. Artificially incubated hatchlings released outside of the maternal alligator's home range had lower recapture probabilities than either naturally incubated hatchlings or artificially incubated hatchlings released near the original nest site. Recapture probabilities of other treatments did not differ significantly. Artificially incubated hatchlings were approximately 6% shorter than naturally incubated hatchlings at approximately nine months after hatching. We concluded that repatriation of hatchlings probably would not have long-term effects on populations because of the resiliency of alligator populations to alterations of early age-class survival and growth rates of the magnitude that we observed. Repatriation of hatchlings may be an economical alternative to repatriation of older juveniles for population restoration. However, the location of release may affect subsequent survival and growth. Copyright 2006 Society for the Study of Amphibians and Reptiles.

  19. Pre-incubation movements of female wild turkeys relative to nest initiation in South Dakota

    Treesearch

    Chad P. Lehman; Lester D. Flake; Mark A. Rumble; Roger D. Shields; Dan J. Thompson

    2005-01-01

    Nests of radiotransmittered wild turkeys (Meleagris gallopavo) that are destroyed or abandoned prior to incubation are particularly difficult to locate. As a result researchers often report only incubated nests or estimate numbers of nests attempted by localization of movement or other behavioral changes without quantification. We used radiotelemetry...

  20. The role of prolactin during incubation: comparative studies of three Diomedea albatrosses.

    PubMed

    Hector, J A; Goldsmith, A R

    1985-11-01

    There is much recent evidence that prolactin is an important influence on parental and incubatory behaviour in birds. In this study prolactin was measured at various stages of the breeding cycle in three closely related albatrosses (the wandering albatross Diomedea exulans, the grey-headed albatross D. chrysostoma, and the black-browed albatross D. melanophris). Each species is monogamous, laying one egg, with the sexes sharing parental duties, including lengthy incubation shifts. In experiments where blood samples were taken daily throughout single incubation shifts (of both sexes) and every 3 hr for 36 hr, high prolactin levels were observed, but there was no indication of any changes that might suggest direct relationships between the hormone concentrations and incubatory behaviour. However, high prolactin levels were characteristic of the whole incubation period with a significant decline in concentrations towards the end of the brood-guard period. The timing of the decline in prolactin levels remained constant, even when the incubation period was artificially lengthened or shortened, as did the overall duration of the incubation-brood-guard period. Further experiments eliminated the possibility that the secretion of prolactin was a response to tactile stimulation of the brood patch by the egg. These results suggest that the incubation period is not endogenously timed but that prolactin may still affect the overall duration of the incubation-brood-guard period, although having little or no effect on the number or duration of incubation shifts.

  1. Automatic Incubator-type Temperature Control System for Brain Hypothermia Treatment

    NASA Astrophysics Data System (ADS)

    Gaohua, Lu; Wakamatsu, Hidetoshi

    An automatic air-cooling incubator is proposed to replace the manual water-cooling blanket to control the brain tissue temperature for brain hypothermia treatment. Its feasibility is theoretically discussed as follows: First, an adult patient with the cooling incubator is modeled as a linear dynamical patient-incubator biothermal system. The patient is represented by an 18-compartment structure and described by its state equations. The air-cooling incubator provides almost same cooling effect as the water-cooling blanket, if a light breeze of speed around 3 m/s is circulated in the incubator. Then, in order to control the brain temperature automatically, an adaptive-optimal control algorithm is adopted, while the patient-blanket therapeutic system is considered as a reference model. Finally, the brain temperature of the patient-incubator biothermal system is controlled to follow up the given reference temperature course, in which an adaptive algorithm is confirmed useful for unknown environmental change and/or metabolic rate change of the patient in the incubating system. Thus, the present work ensures the development of the automatic air-cooling incubator for a better temperature regulation of the brain hypothermia treatment in ICU.

  2. Does fine sediment source as well as quantity affect salmonid embryo mortality and development?

    PubMed

    Sear, D A; Jones, J I; Collins, A L; Hulin, A; Burke, N; Bateman, S; Pattison, I; Naden, P S

    2016-01-15

    Fine sediments are known to be an important cause of increased mortality in benthic spawning fish. To date, most of the research has focussed on the relationship between embryo mortality and the quantity of fine sediment accumulated in the egg pocket. However, recent evidence suggests a) that the source of fine sediment might also be important, and b) that fitness of surviving embryos post-hatch might also be impacted by the accumulation of fine sediments. In this paper, we report an experiment designed to simulate the incubation environment of brown trout (Salmo trutta) and Atlantic salmon (Salmo salar). During the experiment, the incubating embryos were exposed to different quantities of fine (<63 μm) sediment derived from four different sources; agricultural topsoils, damaged road verges, eroding river channel banks and tertiary level treated sewage. Results showed that mass and source are independently important for determining the mortality and fitness of alevin. Differences between species were observed, such that brown trout are less sensitive to mass and source of accumulated sediment. We demonstrate for the first time that sediment source is an additional control on the impact of fine sediment, and that this is primarily controlled by the organic matter content and oxygen consumption of the catchment source material.

  3. Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes.

    PubMed

    Steenbergh, Anne K; Bodelier, Paul L E; Slomp, Caroline P; Laanbroek, Hendrikus J

    2014-01-01

    Phosphorus release from sediments can exacerbate the effect of eutrophication in coastal marine ecosystems. The flux of phosphorus from marine sediments to the overlying water is highly dependent on the redox conditions at the sediment-water interface. Bacteria are key players in the biological processes that release or retain phosphorus in marine sediments. To gain more insight in the role of bacteria in phosphorus release from sediments, we assessed the effect of redox conditions on the structure of bacterial communities. To do so, we incubated surface sediments from four sampling sites in the Baltic Sea under oxic and anoxic conditions and analyzed the fingerprints of the bacterial community structures in these incubations and the original sediments. This paper describes the effects of redox conditions, sampling station, and sample type (DNA, RNA, or whole-cell sample) on bacterial community structure in sediments. Redox conditions explained only 5% of the variance in community structure, and bacterial communities from contrasting redox conditions showed considerable overlap. We conclude that benthic bacterial communities cannot be classified as being typical for oxic or anoxic conditions based on community structure fingerprints. Our results suggest that the overall structure of the benthic bacterial community has only a limited impact on benthic phosphate fluxes in the Baltic Sea.

  4. Molybdenum Cycling in Upwelling Sediments: An Example from Namibian Margin Sediments

    NASA Astrophysics Data System (ADS)

    Arnold, G. L.; Goldhammer, T.; Formolo, M.; Brunner, B.; Ferdelman, T.

    2008-12-01

    The paleo-redox application of molybdenum (Mo) isotopes is strongly tied to our knowledge of the modern marine Mo cycle. Elemental mass balance indicates that ~47% of the Mo supplied to the oceans is removed to deep sea sediments, leaving the remaining Mo to "near-shore" reducing sediments (1). The Black Sea is likely the best studied reducing environment with regards to Mo isotopes, yet accounts for only a small fraction of the Mo mass balance. The accumulation of Mo in continental margin sediments has been recently re-assessed and may account for a larger fraction of the marine Mo reservoir than previously thought (2). In the presence of sulfide, the molybdate anion is transformed, by the replacement of oxygen with sulfur, to particle reactive oxy-thiomolybdates (3). This is often cited as the mechanism by which Mo removal proceeds in the Black Sea where sulfide concentrations in the water are high. In contrast, in continental margin settings, the removal mechanism is poorly understood, and the extent to which sulfur cycling plays a role remains un-quantified. To better understand removal/cycling processes in a continental margin setting, where sulfide may only be present in the pore waters and not in the water column, Mo was studied in an array of marine settings off the Namibian coast. Surface sediments were collected across a transect from near-shore/high productivity to deep water/low productivity sediments. These sediments were incubated in bag experiments to study the relationship between sulfur and Mo cycling. Molybdenum concentrations in the Namibian sediments range from detrital values at the lowest productivity site to 25 ppm in surface sediments with high productivity. Preliminary results allude to a correlation between sulfate reduction rates and Mo accumulation in these sediments. Detailed studies of Mo, Mo isotopes, other trace metals, and sulfur investigations from both sediment cores and bag experiments will be presented. (1)Bertine and Turekian

  5. Interactions between fine-grained sediment delivery, river bed deposition and salmonid spawning success

    NASA Astrophysics Data System (ADS)

    Pattison, I.; Sear, D. A.; Collins, A. L.; Jones, J. I.; Naden, P. S.

    2015-03-01

    Salmonids clean river bed gravels to lay their eggs. However, during the incubation period fine sediment infiltrates the bed. This has been found to limit the success of salmonid spawning, as fine sediment reduces gravel permeability resulting in intra-gravel flow velocities and O2 concentrations decreasing. The success of salmonid spawning is therefore a function of the coincidence of fine sediment delivery and the development of the salmonid eggs. The presence of fine sediment also exerts sub-lethal effects on the rate of egg development with a negative feedback slowing and extending the incubation process meaning the eggs are in the gravels for longer and susceptible to more potential sediment delivery events. The SIDO (Sediment Intrusion and Dissolved Oxygen)-UK model is a physically-based numerical model which simulates the effect of fine sediment deposition on the abiotic characteristics of the salmonid redd, along with the consequences for egg development and survival. This model is used to investigate the interactions and feedbacks between the timing and concentrations of suspended sediment delivery events, and the deposition of fine sediment within the gravel bed, and the consequences of this on the rate of egg development and survival. The model simulations suggest that egg survival is highly sensitive to suspended sediment concentrations, particularly to changes in the supply rate of sand particles. The magnitude, frequency and specific timing of sediment delivery events effects egg survival rates. The modelling framework is also used to investigate the impact of the rate of gravel infilling by sediment. The hypotheses of continual, discrete event and non-linear decline in the rate of infilling are investigated.

  6. Incubation stage and polychlorinated biphenyl (PCB) congener patterns in an altricial and precocial bird species

    USGS Publications Warehouse

    Custer, Christine M.; Custer, Thomas W.; Thyen, Stefan; Becker, Peter H.

    2014-01-01

    The composition of polychlorinated biphenyl (PCB) congeners was compared between non-incubated and embryonated eggs of tree swallows (Tachycineta bicolor) and little terns (Sterna albifrons) to determine if measurable changes in PCB congeners occurred during the embryonic period. There was no indication of changes in PCB congener patterns over the incubation period in tree swallows in 1999 and 2000 at a site with very high PCB exposure or a site with more modest PCB exposure. Additionally, congeners known to be either quickly metabolized or conserved based on experimental studies did not generally respond as predicted. Similarly, PCB congener patterns in eggs of little terns from Bottsand, Schleswig-Holstein, Germany, did not differ between non-incubated and embryonated eggs. The results from both species suggest that the stage of incubation is not an important consideration when evaluating PCB congener patterns; comparisons and assessments can be made with eggs collected at all stages of incubation.

  7. Incubation rhythm in the Fulmar Fulmarus glacialis: Annual variation and sex roles

    USGS Publications Warehouse

    Hatch, Scott A.

    1990-01-01

    I monitored the incubation schedules of Fulmars Fulmarus glacialis in an Alaskan colony by observing nests where the male and female were of different colour phases. Complete shifts of up to 16 days were recorded; the average shift in mid-incubation was 4–6 days. Mean shift length was inversely correlated with hatching success in 5 years, suggesting that Fulmars adjusted their foraging patterns to annual differences in food availability. Males assumed the larger share (55%) of incubation on average, and a larger share in years with lower hatching success. Serial correlation in the length of incubation shifts had two components - the influence of prior shift lengths on time spent foraging and individual variation. Failure of the male to relieve the female soon after laying resulted in a few breeding failures and egg losses were associated with exceptionally long shifts throughout incubation.

  8. Are thyroid hormones mediators of incubation temperature-induced phenotypes in birds?

    PubMed Central

    DuRant, S. E.; Carter, A. W.; Denver, R. J.; Hepp, G. R.; Hopkins, W. A.

    2014-01-01

    Incubation temperature influences a suite of traits in avian offspring. However, the mechanisms underlying expression of these phenotypes are unknown. Given the importance of thyroid hormones in orchestrating developmental processes, we hypothesized that they may act as an upstream mechanism mediating the effects of temperature on hatchling phenotypic traits such as growth and thermoregulation. We found that plasma T3, but not T4 concentrations, differed among newly hatched wood ducks (Aix sponsa) from different embryonic incubation temperatures. T4 at hatching correlated with time spent hatching, and T3 correlated with hatchling body condition, tarsus length, time spent hatching and incubation period. In addition, the T3 : T4 ratio differed among incubation temperatures at hatch. Our findings are consistent with the hypothesis that incubation temperature modulates plasma thyroid hormones which in turn influences multiple aspects of duckling phenotype. PMID:24402717

  9. Are thyroid hormones mediators of incubation temperature-induced phenotypes in birds?

    PubMed

    DuRant, S E; Carter, A W; Denver, R J; Hepp, G R; Hopkins, W A

    2014-01-01

    Incubation temperature influences a suite of traits in avian offspring. However, the mechanisms underlying expression of these phenotypes are unknown. Given the importance of thyroid hormones in orchestrating developmental processes, we hypothesized that they may act as an upstream mechanism mediating the effects of temperature on hatchling phenotypic traits such as growth and thermoregulation. We found that plasma T₃, but not T₄ concentrations, differed among newly hatched wood ducks (Aix sponsa) from different embryonic incubation temperatures. T₄ at hatching correlated with time spent hatching, and T₃ correlated with hatchling body condition, tarsus length, time spent hatching and incubation period. In addition, the T₃ : T₄ ratio differed among incubation temperatures at hatch. Our findings are consistent with the hypothesis that incubation temperature modulates plasma thyroid hormones which in turn influences multiple aspects of duckling phenotype.

  10. Incubation Period Duration and Severity of Clinical Disease Following Severe Acute Respiratory Syndrome Coronavirus Infection

    PubMed Central

    Virlogeux, Victor; Fang, Vicky J.; Wu, Joseph T.; Ho, Lai-Ming; Malik Peiris, J. S.; Leung, Gabriel M.; Cowling, Benjamin J.

    2016-01-01

    Background Few previous studies have investigated the association between the severity of an infectious disease and the length of incubation period. Methods We estimated the association between the length of the incubation period and the severity of infection with the severe acute respiratory syndrome (SARS) coronavirus, using data from the epidemic in 2003 in Hong Kong. Results We estimated the incubation period of SARS based on a subset of patients with available data on exposure periods and a separate subset of patients in a putative common source outbreak, and we found significant associations between shorter incubation period and greater severity in both groups after adjusting for potential confounders. Conclusions Our findings suggest that patients with a shorter incubation period proceeded to have more severe disease. Further studies are needed to investigate potential biological mechanisms for this association. PMID:26133021

  11. Comparison of medium, temperature, and length of incubation for detection of vancomycin-resistant Enterococcus.

    PubMed

    Nguyen, Trang D Hua; Evans, Kaye D; Goh, Rosalinda A; Tan, Grace L; Peterson, Ellena M

    2012-07-01

    Campylobacter (Campy; BD Diagnostics, Sparks, MD), Spectra VRE (Remel, Lenexa, KS), and bile-esculin-azide-vancomycin (BEAV; Remel) agars were compared for their ability to detect vancomycin-resistant enterococci (VRE) in 750 stool specimens. The media were compared at 24 h and 48 h of incubation at 35°C and 42°C. When incubated for 24 h at 35°C, Campy was the most sensitive (97.8%) and specific (99.9%) but was comparable to Spectra, which has a sensitivity of 95.6% and a specificity of 99.1%, whereas BEAV was significantly less sensitive (90%) and specific (96.1%). Incubation at 42°C or extended incubation at 35°C for 48 h yielded no advantage over incubation at 35°C for 24 h.

  12. Incubation stage and polychlorinated biphenyl (PCB) congener patterns in an altricial and precocial bird species.

    PubMed

    Custer, Christine M; Custer, Thomas W; Thyen, Stefan; Becker, Peter H

    2014-12-01

    The composition of polychlorinated biphenyl (PCB) congeners was compared between non-incubated and embryonated eggs of tree swallows (Tachycineta bicolor) and little terns (Sterna albifrons) to determine if measurable changes in PCB congeners occurred during the embryonic period. There was no indication of changes in PCB congener patterns over the incubation period in tree swallows in 1999 and 2000 at a site with very high PCB exposure or a site with more modest PCB exposure. Additionally, congeners known to be either quickly metabolized or conserved based on experimental studies did not generally respond as predicted. Similarly, PCB congener patterns in eggs of little terns from Bottsand, Schleswig-Holstein, Germany, did not differ between non-incubated and embryonated eggs. The results from both species suggest that the stage of incubation is not an important consideration when evaluating PCB congener patterns; comparisons and assessments can be made with eggs collected at all stages of incubation. Published by Elsevier Ltd.

  13. Si nanowire growth on sapphire: Classical incubation, reverse reaction, and steady state supersaturation

    SciTech Connect

    Shakthivel, Dhayalan; Rathkanthiwar, Shashwat; Raghavan, Srinivasan

    2015-04-28

    Si nanowire growth on sapphire substrates by the vapor-liquid-solid (VLS) method using Au catalyst particles has been studied. Sapphire was chosen as the substrate to ensure that the vapor phase is the only source of Si. Three hitherto unreported observations are described. First, an incubation period of 120–480 s, which is shown to be the incubation period as defined in classical nucleation theory, is reported. This incubation period permits the determination of a desolvation energy of Si from Au-Si alloys of 15 kT. Two, transmission electron microscopy studies of incubation, point to Si loss by reverse reaction as an important part of the mechanism of Si nanowire growth by VLS. Three, calculations using these physico-chemical parameters determined from incubation and measured steady state growth rates of Si nanowires show that wire growth happens from a supersaturated catalyst droplet.

  14. Salinity of incubation media influences embryonic development of a freshwater turtle.

    PubMed

    Bower, Deborah S; Hodges, Kate M; Georges, Arthur

    2013-02-01

    Variations in water potential have marked effects on aspects of embryological development in reptiles. Therefore variation in the salinity of the incubation environment is likely to have significant consequences on the early life stage. The combination of an extended incubation period, coupled with the real threat of soil salinisation within their range makes Chelodina expansa an ideal model to assess the influence of salinity on turtle embryology. We quantified the influence of salt on the development of C. expansa hatchlings in four substrate treatments varying in salinity. Embryos incubated in higher salinities had 39 % less survival than those incubated in substrates with freshwater. Hatchlings that emerged from eggs in saline treatments were smaller with higher concentrations of plasma sodium, chloride, urea, and potassium. The physiological effects of salinity mirror those of turtles incubated in drier media with low water potential. Salinisation of river banks has the potential to reduce hatching success and fitness of nesting reptiles.

  15. Assessment and Certification of Neonatal Incubator Sensors through an Inferential Neural Network

    PubMed Central

    de Araújo Júnior, José Medeiros; de Menezes Júnior, José Maria Pires; de Albuquerque, Alberto Alexandre Moura; Almeida, Otacílio da Mota; de Araújo, Fábio Meneghetti Ugulino

    2013-01-01

    Measurement and diagnostic systems based on electronic sensors have been increasingly essential in the standardization of hospital equipment. The technical standard IEC (International Electrotechnical Commission) 60601-2-19 establishes requirements for neonatal incubators and specifies the calibration procedure and validation tests for such devices using sensors systems. This paper proposes a new procedure based on an inferential neural network to evaluate and calibrate a neonatal incubator. The proposal presents significant advantages over the standard calibration process, i.e., the number of sensors is drastically reduced, and it runs with the incubator under operation. Since the sensors used in the new calibration process are already installed in the commercial incubator, no additional hardware is necessary; and the calibration necessity can be diagnosed in real time without the presence of technical professionals in the neonatal intensive care unit (NICU). Experimental tests involving the aforementioned calibration system are carried out in a commercial incubator in order to validate the proposal. PMID:24248278

  16. The dirt on sediments

    USGS Publications Warehouse

    Smith, Loren M.; Euliss, Ned H. "Chip"

    2010-01-01

    In the wetland science field, sediment deposition is often thought of as being beneficial especially when one thinks of coastal estuarine systems. For example, sediments deposited from streams and rivers are necessary to naturally build and maintain tidal marshes. These sediments come from eroded upland soils in the interior of the continent. When these sediments are diverted from natural coastal deposition areas, such as occurs from river channelization, we lose marshes through subsidence as is happening throughout coastal Louisiana. However, the value of eroded soils is all a matter of hydrogeomorphic perspective.

  17. Fluvial sediment in Ohio

    USGS Publications Warehouse

    Anttila, Peter W.; Tobin, Robert L.

    1978-01-01

    Characteristics of fluvial sediment in Ohio streams and estimates of sediment yield are reported. Results are based on data from several daily record stations and 5 years of intermittent record from a 38-station network. Most of the sediment transported by Ohio streams is in suspension. Mean annual bedload discharge, in percentage of mean annual suspended-sediment discharge, is estimated to be less than 10 percent at all but one of the sediment stations analyzed. Duration analysis shows that about 90 percent of the suspended sediment is discharged during 10 percent of the time. Concentration of suspended sediment averages less than 100 milligrams per liter 75 percent of the time and less than 50 milligrams per liter 50 percent of the time. Suspended sediment in Ohio streams is composed mostly of silt and clay. Sand particle content ranges from 1 to 2 percent in northwestern Ohio to 15 percent in the east and southeast. Sediment yields range from less than 100 tons per square mile per year (35 tonnes per square kilometer per year) in the northwest corner of Ohio to over 500 tons per square mile per year (17,5 tonnes per square kilometer per year) in the southern part, in Todd Fork basin, lower Paint Creek basin, and the Kentucky Bluegrass area. Yield from about 63 percent of Ohio's land area ranges from 100 to 200 tons per square mile per year (35 to 70 tonnes per square kilometer per year).

  18. The effects of heterospecifics and climatic conditions on incubation behavior within a mixed-species colony

    USGS Publications Warehouse

    Coates, Peter S.; Brussee, Brianne E.; Hothem, Roger L.; Howe, Kristy H.; Casazza, Michael L.; Eadie, John M.

    2016-01-01

    Parental incubation behavior largely influences nest survival, a critical demographic process in avian population dynamics, and behaviors vary across species with different life history breeding strategies. Although research has identified nest survival advantages of mixing colonies, behavioral mechanisms that might explain these effects is largely lacking. We examined parental incubation behavior using video-monitoring techniques on Alcatraz Island, California, of black-crowned night-heron Nycticorax nycticorax(hereinafter, night-heron) in a mixed-species colony with California gulls Larus californicus and western gulls L. occidentalis. We first quantified general nesting behaviors (i.e. incubation constancy, and nest attendance), and a suite of specific nesting behaviors (i.e. inactivity, vigilance, preening, and nest maintenance) with respect to six different daily time periods. We employed linear mixed effects models to investigate environmental and temporal factors as sources of variation in incubation constancy and nest attendance using 211 nest days across three nesting seasons (2010–2012). We found incubation constancy (percent of time on the eggs) and nest attendance (percent of time at the nest) were lower for nests that were located < 3 m from one or more gull nest, which indirectly supports the predator protection hypothesis, whereby heterospecifics provide protection allowing more time for foraging and other self-maintenance activities. To our knowledge, this is the first empirical evidence of the influence of one nesting species on the incubation behavior of another. We also identified distinct differences between incubation constancy and nest attentiveness, indicating that these biparental incubating species do not share similar energetic constraints as those that are observed for uniparental species. Additionally, we found that variation in incubation behavior was a function of temperature and precipitation, where the strength of these effects

  19. Fluxes of nutrients and trace metals across the sediment-water interface controlled by sediment-capping agents: bentonite and sand.

    PubMed

    Han, Junho; Ro, Hee-Myong; Cho, Kyung Hwa; Kim, Kyoung-Woong

    2016-10-01

    The effect of bentonite and sand, as natural capping agents, on the fluxes of nutrients and trace metals across the sediment-water interface was studied through sediment incubation, and the ecotoxicological impact was assessed by using Daphnia magna. Bentonite and sand were layered on the sediment at 15, 75, and 225 mg cm(-2), and the concentration of cations, nutrients, and trace metals was measured. Sediment incubation showed that bentonite reduced the N flux but increased the P flux as a result of dissolution of non-crystalline P from bentonite, while sand slightly decreased the N fluxes but not the P flux. The concentration of Na increased in the overlying water with increasing application rates of bentonite, while that of Ca decreased. However, regardless of the rate of sand application, concentrations of all cation species remained unchanged. The concentration of As and Cr increased with bentonite application rate but decreased with sand. Both capping materials suppressed fluxes of Cd, Cu, Ni, and Zn compared to control, and the extent of suppression was different depending on the trace metal species and capping agents used. During sediment incubation, the survival rate of D. magna significantly decreased in bentonite suspension but began to decrease at the end in sand suspension. Sediment capping of mildly polluted sediments by using bentonite and sand lowered the level of nutrients and trace metals. However, unexpected or undesirable side effects, such as influxes of P and As from bentonite to the overlying water and a possibility of toxic impacts to aquatic ecosystems, were observed, suggesting that capping agents with an adequate assessment of their side effects and toxicity should be predetermined for site-specific sediment management strategies.

  20. Continuous Seasonal River Ebullition Measurements Linked to Sediment Methane Formation.

    PubMed

    Wilkinson, Jeremy; Maeck, Andreas; Alshboul, Zeyad; Lorke, Andreas

    2015-11-17

    Laboratory sediment incubations and continuous ebullition monitoring over an annual cycle in the temperate Saar River, Germany confirm that impounded river zones can produce and emit methane at high rates (7 to 30 (g CH4 m(-3) d(-1)) at 25 °C and 270 to 700 (g CH4 m(-2) yr(-1)), respectively). Summer methane ebullition (ME) peaks were a factor of 4 to 10 times the winter minima, and sediment methane formation was dominated by the upper sediment (depths of 0.14 to 0.2 m). The key driver of the seasonal ME dynamics was temperature. An empirical model relating methane formation to temperature and sediment depth, derived from the laboratory incubations, reproduced the measured daily ebullition from winter to midsummer, although late summer and autumn simulated ME exceeded the observed ME. A possible explanation for this was substrate limitation. We recommend measurements of methanogenically available carbon sources to identify substrate limitation and help characterize variation in methane formation with depth and from site to site.

  1. Anaerobic Oxidation of Methane in Sediments of Two Boreal Lakes

    NASA Astrophysics Data System (ADS)

    Tiirola, M. A.; Rissanen, A. J.; Karvinen, A.; Nykänen, H.; Mpamah, P.; Peura, S.; Kankaala, P.

    2014-12-01

    In this study, potential for Anaerobic oxidation of methane (AOM) coupled with metal reduction was studied in boreal lake sediments. Slurries of sediment samples collected from two sites in southeastern Finland, i.e. from Lake Orivesi, Heposelkä, an vegetated littoral site, dominated by Phragmites australis (Sample Sa, sediment layer 0 - 25 cm) and from the profundal zone of a mesotrophic Lake Ätäskö (Aa, 0 - 10 cm; Ab, 10 - 30 cm; Ac, 90 - 130 cm), were incubated in laboratory in anaerobic conditions at in situ temperatures for up to 5 months. The samples were amended either 1) with 13CH4, 2) 13CH4 + manganese(IV) oxide (MnO2) or 3) 13CH4 + iron(III) hydroxide (Fe(OH)3), and the processes were measured by following the 13C transfer to the carbon dioxide (CO2) pool and by concentration measurements of CH4 and CO2. Changes in microbial communities were studied from DNA extracted from sediment samples before and after incubation period by next-generation sequencing (Ion Torrent) of polymerase chain reaction (PCR) - amplified bacterial and archaeal 16S rRNA and methyl coenzyme-M reductase gene (mcrA) amplicons. AOM took place in every sample except in deepest sample (Ac) with potential rates up to 2.1 nmol CH4 d-1 g-1wetsedim (~2 nmol d-1 cm-3) which are considerably lower than previously reported metal-driven AOM in marine sediments (10-40 nmol d-1 cm-3) but within a range of NO3- -driven AOM in an oligotrophic lake (0.6-3.6 nmol d-1 cm-3). AOM took place without metal additions but addition of Mn4+ increased the potential rates and this increase was especially high in 10-30 cm layer (Ab) of the profundal site (5-fold increase). The structure of the bacterial and archaeal communities changed considerably during incubation. Communities incubated with Mn4+ were especially different from those incubated with Fe3+ or without metals which were more similar with each other. Surprisingly, anaerobic methanotrophic archaea detected, ANME-2D and AOM-associated archaea (AAA

  2. Role of Central Amygdala Neuronal Ensembles in Incubation of Nicotine Craving.

    PubMed

    Funk, Douglas; Coen, Kathleen; Tamadon, Sahar; Hope, Bruce T; Shaham, Yavin; Lê, A D

    2016-08-17

    The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. Here, we further characterized incubation of nicotine craving in the rat model by determining whether this incubation is observed after adolescent-onset nicotine self-administration. We also used the neuronal activity marker Fos and the Daun02 chemogenetic inactivation procedure to identify cue-activated neuronal ensembles that mediate incubation of nicotine craving. We trained adolescent and adult male rats to self-administer nicotine (2 h/d for 12 d) and assessed cue-induced nicotine seeking in extinction tests (1 h) after 1, 7, 14, or 28 withdrawal days. In both adult and adolescent rats, nicotine seeking in the relapse tests followed an inverted U-shaped curve, with maximal responding on withdrawal day 14. Independent of the withdrawal day, nicotine seeking in the relapse tests was higher in adult than in adolescent rats. Analysis of Fos expression in different brain areas of adolescent and adult rats on withdrawal days 1 and 14 showed time-dependent increases in the number of Fos-positive neurons in central and basolateral amygdala, orbitofrontal cortex, ventral and dorsal medial prefrontal cortex, and nucleus accumbens core and shell. In adult Fos-lacZ transgenic rats, selective inactivation of nicotine-cue-activated Fos neurons in central amygdala, but not orbitofrontal cortex, decreased "incubated" nicotine seeking on withdrawal day 14. Our results demonstrate that incubation of nicotine craving occurs after adolescent-onset nicotine self-administration and that neuronal ensembles in central amygdala play a critical role in this incubation. The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. It is currently unknown whether incubation of craving also occurs after adolescent

  3. Effect of eggshell temperature during incubation on embryo development, hatchability, and posthatch development.

    PubMed

    Lourens, A; van den Brand, H; Meijerhof, R; Kemp, B

    2005-06-01

    An experiment was conducted to study the effects of different eggshell temperature (EST) profiles during incubation on embryo mortality, hatchability, and embryo development. Furthermore, chicks from different EST profiles were reared under low and high housing temperatures to investigate subsequent posthatch growth and rectal temperature. Two batches of eggs were used in this experiment. Hatching eggs were subjected to 36.7 or 37.8 degrees C EST during the first week, to 37.8 degrees C EST during the second week, and to 37.8 or 38.9 degrees C EST during the third week of incubation. Posthatch housing temperature decreased from 35 degrees C at d 1 to 30 degrees C at d 7 (high) or decreased from 30 degrees C at d 1 to 25 degrees C at d 7 (low). The difference between machine temperature and EST (DT) was used to illustrate the effect of EST on heat production during incubation. DT differed per batch, and was smallest when eggs were incubated at 36.7 degrees C instead of 37.8 degrees C during wk 1. High EST during wk 3 of incubation (38.9 degrees C instead of 37.8 degrees C) reduced DT only in batch 2. Embryo development was most retarded in eggs incubated at 36.7 degrees C EST compared with at 37.8 degrees C during the first week of incubation. However, highest hatchability and embryo development were always found when EST was maintained at 37.8 degrees C constantly throughout incubation. Chicks that hatched from eggs incubated at low EST during wk 1 of incubation had lower rectal temperature after hatching, especially under low housing temperatures, and this effect lasted until 7 d posthatch in batch 1. The highest rectal temperatures were always found in chicks incubated at 37.8 degrees C EST constantly throughout incubation. Eggs and chicks from different batches require different environmental conditions for optimal embryo development, hatchability, and posthatch growth. Rearing temperature and incubation conditions affect the ability of young chicks to maintain

  4. Influence of prestorage incubation on embryonic development, hatchability, and chick quality.

    PubMed

    Reijrink, I A M; Meijerhof, R; Kemp, B; Graat, E A M; van den Brand, H

    2009-12-01

    Egg storage longer than 7 d is associated with a delay in hatch time and a decline in hatchability and chick quality. Prestorage incubation is suggested as a method to reduce the negative effects of prolonged storage times by altering the developmental stage of the embryo, but earlier research has shown that prestorage incubation can both be detrimental and beneficial for hatchability. The reason for these ambiguous results is not clear and the effect of prestorage incubation on chick quality is not studied extensively. The objective of this study was to investigate changes in developmental stage of embryos during prestorage incubation and the effect of prestorage incubation on hatchability and chick quality. Two experiments were conducted. In experiment I, eggs were stored for 3, 5, 8, or 12 d. In experiment II, eggs were stored for 5 or 11 d. Half of the eggs was stored immediately at 16 to 18 degrees C and the other half was exposed to prestorage incubation for 6 h in experiment I and for 4.5 h in experiment II. According to the classification table of Eyal-Giladi and Kochav (EG), embryonic development was advanced by prestorage incubation from developmental stage EG11.67 to developmental stage EG13.26 in experiment I (P = 0.02) and from developmental stage EG9.22 to developmental stage EG12.63 in experiment II (P < 0.0001). In experiment I, prestorage incubation reduced hatchability of set eggs from 59.3 to 51.5% when storage time was 12 d but did not reduce hatchability when storage time was 3, 5, or 8 d (interaction P = 0.02). Prestorage incubation increased chick length (P = 0.004). In experiment II, prestorage incubation increased hatchability of fertile eggs from 80.6 to 85.9% when storage time was 11 d but did not increase hatchability when storage time was 5 d (interaction P = 0.0009). Prestorage incubation increased percentage of second grade chicks (P = 0.0007). It seems that storage time, embryonic development at egg collection, and prestorage

  5. Some applications of time-marking sediment traps and their implication for monitoring of sediment discharge from disturbed areas

    SciTech Connect

    Nuhfer, E.B.; Anderson, R.Y.; Dean, W.E.

    1985-12-01

    Sediment traps with sample time-marking capabilities have been utilized by the authors to study a variety of sedimentation rates and processes in lakes in both eastern and western US. Through using such traps in field studies, the authors have confirmed with major role that resuspension plays in governing sediment composition, sediment distribution, and duration of entrainment in lakes and reservoirs. In lakes and reservoirs fed from poorly-vegetated drainage basins, suspended sediment present in the reservoirs appears associated closely with rainfall and basin erosion. However, in lakes and reservoirs in well-vegetated basins suspended sediment is more closely related to resuspension caused by thermal destratification and wind-induced circulation. Time-marking sediment traps provide the continuous records of sedimentation that are needed for detailed understanding of patterns and processes. In these studies, they have served to provide information that could not be achieved through more conventional types of sampling. The information is closely analogous to the type sought in studies of reservoir sedimentation in areas disturbed by mining, logging, construction, farming, grazing, or other activities. Time-marking sediment traps hold much potential for such studies. 14 references, 9 figures, 4 tables.

  6. Microbial Populations Stimulated for Hexavalent Uranium Reduction in Uranium Mine Sediment

    PubMed Central

    Suzuki, Yohey; Kelly, Shelly D.; Kemner, Kenneth M.; Banfield, Jillian F.

    2003-01-01

    Uranium-contaminated sediment and water collected from an inactive uranium mine were incubated anaerobically with organic substrates. Stimulated microbial populations removed U almost entirely from solution within 1 month. X-ray absorption near-edge structure analysis showed that U(VI) was reduced to U(IV) during the incubation. Observations by transmission electron microscopy, selected area diffraction pattern analysis, and energy-dispersive X-ray spectroscopic analysis showed two distinct types of prokaryotic cells that precipitated only a U(IV) mineral uraninite (UO2) or both uraninite and metal sulfides. Prokaryotic cells associated with uraninite and metal sulfides were inferred to be sulfate-reducing bacteria. Phylogenetic analysis of 16S ribosomal DNA obtained from the original and incubated sediments revealed that microbial populations were changed from microaerophilic Proteobacteria to anaerobic low-G+C gram-positive sporeforming bacteria by the incubation. Forty-two out of 94 clones from the incubated sediment were related to sulfate-reducing Desulfosporosinus spp., and 23 were related to fermentative Clostridium spp. The results suggest that, if in situ bioremediation were attempted in the uranium mine ponds, Desulfosporosinus spp. would be a major contributor to U(VI) and sulfate reduction and Clostridium spp. to U(VI) reduction. PMID:12620814

  7. Reductive debromination of the commercial polybrominated biphenyl mixture firemaster BP6 by anaerobic microorganisms from sediments

    SciTech Connect

    Morris, P.J.; Quensen, J.F. III; Tiedje, J.M.; Boyd, S.A. )

    1992-10-01

    Anaerobic microorganisms eluted from three sediments, one contaminated with polybrominated biphenyls (PBBs) and two contaminated with polychlorinated biphenyls, were compared for their ability to debrominate the commercial PBB mixture Firemaster. These microorganisms were incubated with reduced anaerobic mineral medium and noncontaminated sediment amended with Firemaster. Firemaster averages six bromines per biphenyl molecule; four of the bromines are substituted in the meta or para position. The inocula from all three sources were able to debrominate the meta and para positions. Microorganisms from the Pine River (St. Louis, Mich.) contaminated with Firemaster, the Hudson River (Hudson Falls, N.Y.) contaminated with Aroclor 1242, and Silver Lake (Pittsfield, Mass.) contaminated with Aroclor 1260 removed 32, 12, and 3% of the meta plus para bromines, respectively, after 32 weeks of incubation. This suggests that previous environmental exposure to PBBs enhances the debromination capability of the sediment microbial community through selection for different strains of microorganisms. The Pine River inoculum removed an average of 1.25 bromines per biphenyl molecule during a 32-week incubation period, resulting in a mixture potentially more accessible to aerobic degradation processes. No ortho bromine removal was observed. However, when Firemaster was incubated with Hudson River microorganisms that had been repeatedly transferred on a pyruvate medium amended with Aroclor 1242, 17% of the meta and para bromines were removed after 16 weeks of incubation and additional debromination products, including 2-bromobiphenyl and biphenyl, were detected.

  8. Light Reduction Capabilities of Homemade and Commercial Incubator Covers in NICU.

    PubMed

    Ludington-Hoe, Susan M; Abouelfettoh, Amel

    2013-01-01

    Reduction of high-risk neonates' exposure to aversive light stimulation is an important component of developmentally supportive care. In neonatal intensive care unit (NICU), usually light is reduced by reducing the room's light level or by using incubator covers. Many types of incubator covers are in use, including homemade and commercial covers. A comparative study was used to determine the light reducing capabilities of 19 homemade incubator covers, 2 commercial covers, and 1 receiving blanket. The covers were tested by covering and uncovering an incubator and an oxygen hood in the NICU during daytime and nighttime lightings. The light reducing capabilities value was determined for each cover using an Extech light dosimeter when the cover was placed over and removed from an oxyhood, and an incubator. The study showed that the light reducing capability of the commercial covers was 91.2%, the homemade covers capability was 72.1%, and the receiving blankets capability was 55.1%. A significant difference between the commercial and homemade covers was found (F = 452.50, P < 0.00). Commercial incubator covers are the most effective covers to achieve light reduction; homemade covers can be effective if made large enough so that they completely cover all sides of the incubator.

  9. Sex-specific effects of increased incubation demand on innate immunity in black guillemots.

    PubMed

    Berzins, Lisha L; Gilchrist, H Grant; Matson, Kevin D; Burness, Gary

    2011-01-01

    Life-history theory predicts that there should be negative fitness consequences, in terms of future reproduction and survival, for parents with increased reproductive effort. We examined whether increased incubation demand affected innate immunity and body condition by performing a clutch-size manipulation experiment in black guillemots (Cepphus grylle). We found that plasma from males incubating experimentally enlarged clutches exhibited significantly reduced lysis titers compared with plasma from males incubating control clutches, while this was not observed in females. The increased incubation demand also impacted agglutination titers differently in males and females, although the effect of treatment was not significant in either sex. Among all birds, lysis titers increased and haptoglobin concentrations decreased from mid- to late incubation. Natural antibody-mediated agglutination titers and body condition were highly repeatable within the incubation bout and between years. This suggests that agglutination titers may serve as a reliable and resilient index of the immunological character of individuals in future studies. Overall, this study demonstrates that increased incubation demand impacts indices of innate immunity differently in males and females. The potential for different components of the immune system to be impacted sex-specifically should be considered in future studies linking immune function and life-history trade-offs.

  10. Pathogenicity of Choristoneura fumiferana nucleopolyhedrovirus propagated in vitro at different incubation temperatures.

    PubMed

    Ebling, Peter M; Caputo, Guido F; Cook, Barbara J

    2003-01-01

    To optimize the in vitro production of Choristoneura fumiferana nucleopolyhedrovirus (CfMNPV) as a potential microbial pest control agent, the pathogenicity of occlusion bodies (OBs) produced in two cell lines at three incubation temperatures was determined by bioassay. A plaque-purified isolate of CfMNPV was amplified in permissive C. fumiferana cell lines, FPMI-CF-203 and FPMI-CF-2C1, and incubated at 22, 24, and 28 degrees C. Occlusion bodies propagated in FPMI-CF-203 cells at 28 degrees C were significantly larger (17.5 microm(3)) and more pathogenic (LD(50) = 27; LD(95) = 185, where LD(50) and LD(95) are doses required to kill 50 and 95% of the test larvae, respectively) than those produced in either of the cell lines at any of the incubation temperatures tested. Increased temperatures yielded larger OBs from both cell lines. The pathogenicity of OBs propagated in the FPMI-CF-203 cell line increased with incubation temperature, whereas that of OBs produced in FPMI-CF-2C1 cells decreased. Comparison of the pathogenicity of OBs, whether naturally occurring or genetically modified, should be standardized by cell line and incubation temperature used for propagation. Production efficiency decreased with increasing incubation temperature for each cell line. Lower incubation temperatures used for propagation, and standardization of the titer of viral inoculum, should be further investigated to determine the economic feasibility of the in vitro production of CfMNPV as a microbial pest control agent.

  11. Effect of egg weight and position relative to incubator fan on broiler hatchability and chick quality.

    PubMed

    Elibol, O; Brake, J

    2008-09-01

    Two experiments, which included 3 incubators, were carried out to investigate the effects of egg weight and position relative to incubator (setter) fan on embryonic mortality, second quality chicks, and fertile hatchability of broiler eggs. Three egg weight groups termed small (approximately 62.4 g), average (approximately 65.4 g), and large (approximately 68.9 g) were set in either the incubator trolley most distant from the fan (FAR) or in the incubator trolley nearest the fan (NEAR) as would be the case during single-stage operation in this type of incubator. Fertile hatchability decreased in the large egg weight group due to increased percentage late embryonic mortality in experiment 1, and both percentage early and late embryonic mortality in experiment 2. Percentage late embryonic mortality and second quality chicks increased and percentage fertile hatchability decreased for eggs in the FAR position in experiment 1 only. A significant interaction of incubator position x egg weight group for late embryonic mortality, second quality chicks, and fertile hatchability was found in experiment 1, but only late embryonic mortality was so affected in experiment 2. Experiment 2 was conducted so that eggshell temperatures could be measured. Large eggs in the FAR position at transfer time (E 18) exhibited significantly higher eggshell temperatures than did the other groups probably because air velocity or air distribution was modified in the FAR position of the incubator and large eggs were most negatively influenced in the trolley in this position.

  12. Equipment-free incubation of recombinase polymerase amplification reactions using body heat.

    PubMed

    Crannell, Zachary Austin; Rohrman, Brittany; Richards-Kortum, Rebecca

    2014-01-01

    The development of isothermal amplification platforms for nucleic acid detection has the potential to increase access to molecular diagnostics in low resource settings; however, simple, low-cost methods for heating samples are required to perform reactions. In this study, we demonstrated that human body heat may be harnessed to incubate recombinase polymerase amplification (RPA) reactions for isothermal amplification of HIV-1 DNA. After measuring the temperature of mock reactions at 4 body locations, the axilla was chosen as the ideal site for comfortable, convenient incubation. Using commonly available materials, 3 methods for securing RPA reactions to the body were characterized. Finally, RPA reactions were incubated using body heat while control RPA reactions were incubated in a heat block. At room temperature, all reactions with 10 copies of HIV-1 DNA and 90% of reactions with 100 copies of HIV-1 DNA tested positive when incubated with body heat. In a cold room with an ambient temperature of 10 degrees Celsius, all reactions containing 10 copies or 100 copies of HIV-1 DNA tested positive when incubated with body heat. These results suggest that human body heat may provide an extremely low-cost solution for incubating RPA reactions in low resource settings.

  13. Incubation temperature affects the behavior of adult leopard geckos (Eublepharis macularius).

    PubMed

    Flores, D; Tousignant, A; Crews, D

    1994-06-01

    The leopard gecko has temperature-dependent sex determination (TSD); females are predominantly produced when incubated at 26 degrees C (100%), 30 degrees C (70%), and 34 degrees C (95%), whereas males are predominantly produced at 32.5 degrees C (75%). Exogenous estradiol can override the effect of temperature on sex determination. To compare temperature-determined females with hormone-determined females, eggs from the male-biased temperature were treated with estradiol benzoate during incubation. As adults, animals from a male-biased incubation temperature were more likely to exhibit aggression than animals from female-biased incubation temperatures. Furthermore, females from a male-biased incubation temperature tended to be less attractive than females from female-biased temperatures. Hormone-determined females were both attractive and aggressive. This suggests that incubation temperature is an important development determinant of adult aggressiveness and attractiveness. The 26 degrees C animals ovariectomized on the day of hatch exhibited more frequent aggression and were unreceptive to males, indicating that postnatal ovarian hormones also play a role in adult sociosexual behaviors. The parallel between incubation temperature and intrauterine position in laboratory mammals is discussed.

  14. Factors affecting incubation patterns and sex roles of black oystercatchers in Alaska

    USGS Publications Warehouse

    Spiegel, Caleb S.; Haig, Susan M.; Goldstein, Michael I.; Huso, Manuela M. P.

    2012-01-01

    Studies examining the effects of human disturbance on avian parental behavior and reproductive success are fundamental to bird conservation. However, many such studies fail to also consider the influence of natural threats, a variable environment, and parental roles. Our work examines interactive relationships of cyclical (time of day, tide, temperature, seasonality) and stochastic (natural/human disturbance) processes with incubation patterns (attendance, bout lengths, recess rates) of the Black Oystercatcher (Haematopus bachmani), a shorebird of conservation concern. We used 24-hour-per-day video monitoring of 13 molecularly-sexed breeding pairs to systematically examine incubation, revealing previously undocumented information that may inform conservation practices for the genus. Seven of 22 video-monitored nests failed, primarily from egg depredation by nocturnally-active mammals. Analyses of 3177 hrs of video footage indicated a near doubling of incubation bout lengths at night, corresponding to the increased risk of nighttime egg predation. Females had higher overall nest attendance (54% vs. 42%) and longer mean incubation bout lengths than males (88 min vs. 73 min). Uninterrupted incubation bouts were over twice as long as bouts interrupted by disturbance. Incubating males departed nests substantially more frequently due to nest-area disturbances than females in one, but not both, years of our study. Our findings suggest that sexes exhibit different, but complimentary, incubation patterns, facilitating efficient egg care in a dynamic environment with several nest threats. We emphasize the importance of considering natural influences when evaluating human threats to shorebird reproductive behavior and success.

  15. Applicability of soil column incubation experiments to measure CO2 efflux

    NASA Astrophysics Data System (ADS)

    Guo, Linlin; Nishimura, Taku; Imoto, Hiromi; Sun, Zhigang

    2015-10-01

    Accurate measurements of CO2 efflux from soils are essential to understand dynamic changes in soil carbon storage. Column incubation experiments are commonly used to study soil water and solute transport; however, the use of column incubation experiments to study soil CO2 efflux has seldom been reported. In this study, a 150-day greenhouse experiment with two treatments (no-tillage and tillage soils) was conducted to evaluate the applicability of soil column incubation experiments to study CO2 efflux. Both the chamber measurement and the gradient method were used, and results from the two methods were consistent: tillage increased soil cumulative CO2 efflux during the incubation period. Compared with fieldwork, incubation experiments can create or precisely control experimental conditions and thus have advantages for investigating the influence of climate factors or human activities on CO2 efflux. They are superior to bottle incubation because soil column experiments maintain a soil structure that is almost the same as that in the field, and thus can facilitate analyses on CO2 behaviour in the soil profile and more accurate evaluations of CO2 efflux. Although some improvements are still required for column incubation experiments, wider application of this method to study soil CO2 behaviour is expected.

  16. Improved fluid management utilizing humidified incubators in extremely low birth weight infants.

    PubMed

    Gaylord, M S; Wright, K; Lorch, K; Lorch, V; Walker, E

    2001-01-01

    To compare fluid and electrolyte management in extremely low birth weight (ELBW) infants nursed in humidified versus nonhumidified incubators. Setting--tertiary intensive care nursery. Subjects--all infants with birth weight < 1000 g admitted 1/95 to 1/99 who were treated with incubators and survived for > 96 hours (N = 155). Intervention--retrospective comparison of daily weights, fluid intakes, urine outputs, and serum electrolytes between group 1 (n = 70, nonhumidified incubators, born 1/95 to 1/97) and group 2 (n = 85, humidified incubators, born 1/97 to 1/99) over the first 4 days after birth. Despite similar daily weight losses between groups, group 1 infants received higher fluid intakes, had lower urine outputs, and had a higher incidence of hypernatremia, hyperkalemia, and azotemia (p < 0.05). Although no differences in mortality or the incidence of patent ductus arteriosus, bronchopulmonary dysplasia, or the overall rate of nosocomial infections were observed, the proportion of gram-negative isolates increased significantly (62%, p < 0.05) following the introduction of humidified incubators. ELBW weight infants nursed in humidified incubators have lower fluid requirements, improved electrolyte balance, and higher urine outputs during the first 4 days after birth compared to those nursed in nonhumidified incubators.

  17. Equipment-Free Incubation of Recombinase Polymerase Amplification Reactions Using Body Heat

    PubMed Central

    Richards-Kortum, Rebecca

    2014-01-01

    The development of isothermal amplification platforms for nucleic acid detection has the potential to increase access to molecular diagnostics in low resource settings; however, simple, low-cost methods for heating samples are required to perform reactions. In this study, we demonstrated that human body heat may be harnessed to incubate recombinase polymerase amplification (RPA) reactions for isothermal amplification of HIV-1 DNA. After measuring the temperature of mock reactions at 4 body locations, the axilla was chosen as the ideal site for comfortable, convenient incubation. Using commonly available materials, 3 methods for securing RPA reactions to the body were characterized. Finally, RPA reactions were incubated using body heat while control RPA reactions were incubated in a heat block. At room temperature, all reactions with 10 copies of HIV-1 DNA and 90% of reactions with 100 copies of HIV-1 DNA tested positive when incubated with body heat. In a cold room with an ambient temperature of 10 degrees Celsius, all reactions containing 10 copies or 100 copies of HIV-1 DNA tested positive when incubated with body heat. These results suggest that human body heat may provide an extremely low-cost solution for incubating RPA reactions in low resource settings. PMID:25372030

  18. The composition of the incubation medium influences the sensitivity of mitochondrial permeability transition to cyclosporin A.

    PubMed

    Chávez, Edmundo; García, Noemi; Zazueta, Cecilia; Correa, Francisco; Avilés, César; García, Gerardo; Balam, Eros O

    2003-04-01

    The aim of this work was to study permeability transition, and the influence of the composition of the incubation medium, on the inhibitory action of cyclosporin A. It was found that cyclosporin inhibited the opening of a nonspecific pore, as induced by the uncoupler carbonyl cyanide m-chlorophenylhydrazone, provided K+ was present in the incubation medium, but failed to do so if mitochondria are incubated in sucrose or Na+-based medium. It was also found that the sensitivity of mitochondria to the uncoupler depended on the incubation mixture, being more sensitive when sucrose was the osmotic support. Matrix Ca2+ release, large amplitude swelling, and drop in transmembrane electric gradient revealed permeability transition. The titration of membrane thiol groups shows them to be increased in mitochondria incubated in sucrose medium, in comparison with the values found in mitochondria incubated in KCl or NaCl medium. Our proposal is that the incubation in sucrose medium propitiated a conformational change of membrane proteins in such a way that cyclosporin was unable to bind to its target site.

  19. Spectroscopic characterization of organic matter of a soil and vinasse mixture during aerobic or anaerobic incubation

    SciTech Connect

    Doelsch, Emmanuel Masion, Armand; Cazevieille, Patrick

    2009-06-15

    Mineralization potentials are often used to classify organic wastes. These methods involve measuring CO{sub 2} production during batch experiments, so variations in chemical compounds are not addressed. Moreover, the physicochemical conditions are not monitored during the reactions. The present study was designed to address these deficiencies. Incubations of a mixture of soil and waste (vinasse at 20% dry matter from a fermentation industry) were conducted in aerobic and anaerobic conditions, and liquid samples obtained by centrifugation were collected at 2 h, 1 d and 28 d. Dissolved organic carbon (DOC) patterns highlighted that: there was a 'soil effect' which increased organic matter (OM) degradation in all conditions compared to vinasse incubated alone; and OM degradation was faster under aerobic conditions since 500 mg kg{sup -1} of C remained after aerobic incubation, as compared to 4000 mg kg{sup -1} at the end of the anaerobic incubation period. No changes were detected by Fourier transform infrared spectroscopy (FTIR) between 2 h and 1 d incubation. At 28 days incubation, the FTIR signal of the aerobic samples was deeply modified, thus confirming the high OM degradation. Under anaerobic conditions, the main polysaccharide contributions ({nu}(C-O)) disappeared at 1000 and 1200 cm{sup -1}, as also confirmed by the {sup 13}C NMR findings. Under aerobic incubation, a 50% decrease in the polysaccharide proportion was observed. Under anaerobic conditions, significant chemical modifications of the organic fraction were detected, namely formation of low molecular weight organic acids.

  20. Long-term consequences of high incubation temperature in a wild bird population.

    PubMed

    Nord, Andreas; Nilsson, Jan-Åke

    2016-04-01

    Because incubation by birds is energetically costly, parents frequently trade off investment in incubation against self-maintenance. This can be manifested by a reduction in incubation temperature, which comes at high somatic costs for nestlings. The extent to which these costs constrain fitness is poorly understood. We incubated wild blue tit clutches at three biologically relevant temperatures and subsequently recorded winter survival and survival to the breeding season. Fledglings from the coldest treatment (35.0°C) survived less well than other fledglings, but the proportion of winter and breeding survivors did not differ significantly between treatments. However, survival probability in both seasons increased with body mass at fledging in birds from low and mid incubation temperatures, but decreased with fledging body mass in the high-temperature treatment. Mid-temperature nestlings were heavier as adults, weighing 7% more than low- and high-temperature survivors. Thus, high incubation temperature can be beneficial in the short term, but costs of accelerated embryonic development may equal those of protracted development in the long term. Such hidden consequences of faster development could maintain natural selection for average incubation temperature. © 2016 The Author(s).

  1. Predator-specific effects on incubation behaviour and offspring growth in great tits.

    PubMed

    Basso, Alessandra; Richner, Heinz

    2015-01-01

    In birds, different types of predators may target adults or offspring differentially and at different times of the reproductive cycle. Hence they may also differentially influence incubation behaviour and thus embryonic development and offspring phenotype. This is poorly understood, and we therefore performed a study to assess the effects of the presence of either a nest predator or a predator targeting adults and offspring after fledging on female incubation behaviour in great tits (Parus major), and the subsequent effects on offspring morphological traits. We manipulated perceived predation risk during incubation using taxidermic models of two predators: the short-tailed weasel posing a risk to incubating females and nestlings, and the sparrowhawk posing a risk to adults and offspring after fledging. To disentangle treatment effects induced during incubation from potential carry-over effects of parental behaviour after hatching, we cross-fostered whole broods from manipulated nests with broods from unmanipulated nests. Both predator treatments lead to a reduced on- and off-bout frequency, to a slower decline in on-bout temperature as incubation advanced and showed a negative effect on nestling body mass gain. At the current state of knowledge on predator-induced variation in incubation patterns alternative hypotheses are feasible, and the findings of this study will be useful for guiding future research.

  2. Light Reduction Capabilities of Homemade and Commercial Incubator Covers in NICU

    PubMed Central

    Ludington-Hoe, Susan M.; Abouelfettoh, Amel

    2013-01-01

    Reduction of high-risk neonates' exposure to aversive light stimulation is an important component of developmentally supportive care. In neonatal intensive care unit (NICU), usually light is reduced by reducing the room's light level or by using incubator covers. Many types of incubator covers are in use, including homemade and commercial covers. A comparative study was used to determine the light reducing capabilities of 19 homemade incubator covers, 2 commercial covers, and 1 receiving blanket. The covers were tested by covering and uncovering an incubator and an oxygen hood in the NICU during daytime and nighttime lightings. The light reducing capabilities value was determined for each cover using an Extech light dosimeter when the cover was placed over and removed from an oxyhood, and an incubator. The study showed that the light reducing capability of the commercial covers was 91.2%, the homemade covers capability was 72.1%, and the receiving blankets capability was 55.1%. A significant difference between the commercial and homemade covers was found (F = 452.50, P < 0.00). Commercial incubator covers are the most effective covers to achieve light reduction; homemade covers can be effective if made large enough so that they completely cover all sides of the incubator. PMID:24286012

  3. Effects of sediment transport on survival of salmonid embryos in a natural stream: A simulation approach

    Treesearch

    Thomas E. Lisle; Jack Lewis

    1992-01-01

    A model is presented that simulates the effects of streamflow and sediment transport on survival of salmonid embryos incubating in spawning gravels in a natural channel. Components of the model include a 6-yr streamflow record, an empirical bed load-transport function, a relation between transport and infiltration of sandy bedload into a gravel bed, effects of fine-...

  4. Effects of human recreation on the incubation behavior of American Oystercatchers

    USGS Publications Warehouse

    McGowan, C.P.; Simons, T.R.

    2006-01-01

    Human recreational disturbance and its effects on wildlife demographics and behavior is an increasingly important area of research. We monitored the nesting success of American Oystercatchers (Haematopus palliatus) in coastal North Carolina in 2002 and 2003. We also used video monitoring at nests to measure the response of incubating birds to human recreation. We counted the number of trips per hour made by adult birds to and from the nest, and we calculated the percent time that adults spent incubating. We asked whether human recreational activities (truck, all-terrain vehicle [ATV], and pedestrian traffic) were correlated with parental behavioral patterns. Eleven a priori models of nest survival and behavioral covariates were evaluated using Akaike's Information Criterion (AIC) to see whether incubation behavior influenced nest survival. Factors associated with birds leaving their nests (n = 548) included ATV traffic (25%), truck traffic (17%), pedestrian traffic (4%), aggression with neighboring oystercatchers or paired birds exchanging incubation duties (26%), airplane traffic (1%) and unknown factors (29%). ATV traffic was positively associated with the rate of trips to and away from the nest (??1 = 0.749, P < 0.001) and negatively correlated with percent time spent incubating (??1 = -0.037, P = 0.025). Other forms of human recreation apparently had little effect on incubation behaviors. Nest survival models incorporating the frequency of trips by adults to and from the nest, and the percentage of time adults spent incubating, were somewhat supported in the AIC analyses. A low frequency of trips to and from the nest and, counter to expectations, low percent time spent incubating were associated with higher daily nest survival rates. These data suggest that changes in incubation behavior might be one mechanism by which human recreation affects the reproductive success of American Oystercatchers.

  5. The central amygdala nucleus is critical for incubation of methamphetamine craving.

    PubMed

    Li, Xuan; Zeric, Tamara; Kambhampati, Sarita; Bossert, Jennifer M; Shaham, Yavin

    2015-03-13

    Cue-induced methamphetamine seeking progressively increases after withdrawal but mechanisms underlying this 'incubation of methamphetamine craving' are unknown. Here we studied the role of central amygdala (CeA), ventral medial prefrontal cortex (vmPFC), and orbitofrontal cortex (OFC), brain regions implicated in incubation of cocaine and heroin craving, in incubation of methamphetamine craving. We also assessed the role of basolateral amygdala (BLA) and dorsal medial prefrontal cortex (dmPFC). We trained rats to self-administer methamphetamine (10 days; 9 h/day, 0.1 mg/kg/infusion) and tested them for cue-induced methamphetamine seeking under extinction conditions during early (2 days) or late (4-5 weeks) withdrawal. We first confirmed that 'incubation of methamphetamine craving' occurs under our experimental conditions. Next, we assessed the effect of reversible inactivation of CeA or BLA by GABAA+GABAB receptor agonists (muscimol+baclofen, 0.03+0.3 nmol) on cue-induced methamphetamine seeking during early and late withdrawal. We also assessed the effect of muscimol+baclofen reversible inactivation of vmPFC, dmPFC, and OFC on 'incubated' cue-induced methamphetamine seeking during late withdrawal. Lever presses in the cue-induced methamphetamine extinction tests were higher during late withdrawal than during early withdrawal (incubation of methamphetamine craving). Muscimol+baclofen injections into CeA but not BLA decreased cue-induced methamphetamine seeking during late but not early withdrawal. Muscimol+baclofen injections into dmPFC, vmPFC, or OFC during late withdrawal had no effect on incubated cue-induced methamphetamine seeking. Together with previous studies, results indicate that the CeA has a critical role in incubation of both drug and non-drug reward craving and demonstrate an unexpected dissociation in mechanisms of incubation of methamphetamine vs cocaine craving.

  6. Geographic variation in avian incubation periods and parental influences on embryonic temperature

    USGS Publications Warehouse

    Martin, T.E.; Auer, S.K.; Bassar, R.D.; Niklison, Alina M.; Lloyd, P.

    2007-01-01

    Theory predicts shorter embryonic periods in species with greater embryo mortality risk and smaller body size. Field studies of 80 passerine species on three continents yielded data that largely conflicted with theory; incubation (embryonic) periods were longer rather than shorter in smaller species, and egg (embryo) mortality risk explained some variation within regions, but did not explain larger differences in incubation periods among geographic regions. Incubation behavior of parents seems to explain these discrepancies. Bird embryos are effectively ectothermic and depend on warmth provided by parents sitting on the eggs to attain proper temperatures for development. Parents of smaller species, plus tropical and southern hemisphere species, commonly exhibited lower nest attentiveness (percent of time spent on the nest incubating) than larger and northern hemisphere species. Lower nest attentiveness produced cooler minimum and average embryonic temperatures that were correlated with longer incubation periods independent of nest predation risk or body size. We experimentally tested this correlation by swapping eggs of species with cool incubation temperatures with eggs of species with warm incubation temperatures and similar egg mass. Incubation periods changed (shortened or lengthened) as expected and verified the importance of egg temperature on development rate. Slower development resulting from cooler temperatures may simply be a cost imposed on embryos by parents and may not enhance offspring quality. At the same time, incubation periods of transferred eggs did not match host species and reflect intrinsic differences among species that may result from nest predation and other selection pressures. Thus, geographic variation in embryonic development may reflect more complex interactions than previously recognized. ?? 2007 The Author(s).

  7. Effect of incubation temperature on nutrient transporters and small intestine morphology of broiler chickens.

    PubMed

    Barri, A; Honaker, C F; Sottosanti, J R; Hulet, R M; McElroy, A P

    2011-01-01

    This study evaluated the effects of elevated incubation temperature on posthatch nutrient transporter gene expression, integrity of the intestinal epithelium, organ development, and performance in Ross 308 broiler chickens. Ross × Ross 308 fertile eggs (n = 900) were incubated at different eggshell temperatures during development. From embryonic day (ED) 1 to ED12, all eggs were incubated at 37.1°C, whereas from ED13 to ED21, the eggs were divided into 2 groups for incubation at 37.4°C (S) or 39.6°C (H). Performance characteristics were measured at day of hatch (DOH) and d 7, 14, 21, 30, and 42. Small intestine and residual yolk sacs were collected at DOH and d 2, 4, 6, and 10 and weighed individually. Intestinal samples from the duodenum, jejunum, and ileum were evaluated for mucosal morphology and relative nutrient transporter gene expression. No significant differences were found in performance or organ weights. The intestinal morphology results showed a temperature × age interaction in duodenum villus height (P = 0.02) and crypt depth (P = 0.05) and in ileum villus height-to-crypt depth ratios (P = 0.02). There was a main effect of temperature, resulting in deeper crypts (P = 0.02) in the jejunum of chicks incubated at H compared with S. In the nutrient gene expression evaluation, peptide transporter (PepT1) showed a temperature × age interaction. On DOH and d 2, 4, and 10, PepT1 expression was similar between chicks incubated at S and H. However, on d 6, chicks incubated at S had significantly higher expression of PepT1 than those incubated at H. This study presents the effects of elevated incubation temperature on small intestine morphology and relative expression of nutrient transporter mRNA in high-yield broiler chicks, which can be important for the availability of nutrients and distribution of energy.

  8. The Central Amygdala Nucleus is Critical for Incubation of Methamphetamine Craving

    PubMed Central

    Li, Xuan; Zeric, Tamara; Kambhampati, Sarita; Bossert, Jennifer M; Shaham, Yavin

    2015-01-01

    Cue-induced methamphetamine seeking progressively increases after withdrawal but mechanisms underlying this ‘incubation of methamphetamine craving' are unknown. Here we studied the role of central amygdala (CeA), ventral medial prefrontal cortex (vmPFC), and orbitofrontal cortex (OFC), brain regions implicated in incubation of cocaine and heroin craving, in incubation of methamphetamine craving. We also assessed the role of basolateral amygdala (BLA) and dorsal medial prefrontal cortex (dmPFC). We trained rats to self-administer methamphetamine (10 days; 9 h/day, 0.1 mg/kg/infusion) and tested them for cue-induced methamphetamine seeking under extinction conditions during early (2 days) or late (4–5 weeks) withdrawal. We first confirmed that ‘incubation of methamphetamine craving' occurs under our experimental conditions. Next, we assessed the effect of reversible inactivation of CeA or BLA by GABAA+GABAB receptor agonists (muscimol+baclofen, 0.03+0.3 nmol) on cue-induced methamphetamine seeking during early and late withdrawal. We also assessed the effect of muscimol+baclofen reversible inactivation of vmPFC, dmPFC, and OFC on ‘incubated' cue-induced methamphetamine seeking during late withdrawal. Lever presses in the cue-induced methamphetamine extinction tests were higher during late withdrawal than during early withdrawal (incubation of methamphetamine craving). Muscimol+baclofen injections into CeA but not BLA decreased cue-induced methamphetamine seeking during late but not early withdrawal. Muscimol+baclofen injections into dmPFC, vmPFC, or OFC during late withdrawal had no effect on incubated cue-induced methamphetamine seeking. Together with previous studies, results indicate that the CeA has a critical role in incubation of both drug and non-drug reward craving and demonstrate an unexpected dissociation in mechanisms of incubation of methamphetamine vs cocaine craving. PMID:25475163

  9. Pathways of organic carbon oxidation in three continental margin sediments

    NASA Technical Reports Server (NTRS)

    Canfield, D. E.; Jorgensen, B. B.; Fossing, H.; Glud, R.; Gundersen, J.; Ramsing, N. B.; Thamdrup, B.; Hansen, J. W.; Nielsen, L. P.; Hall, P. O.

    1993-01-01

    We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and Sigma CO2 liberation sediment incubations were used with O2 penetration depths to conclude that O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated organic carbon mineralization, but their relative significance varied depending on the sediment. Where high concentrations of Mn-oxide were found (3-4 wt% Mn), only Mn reduction occurred. With lower Mn oxide concentrations more typical of coastal sediments, Fe reduction and sulfate reduction were most important and of a similar magnitude. Overall, most of the measured O2 flux into the sediment was used to oxidized reduced inorganic species and not organic carbon. We suspect that the importance of O2 respiration in many coastal sediments has been overestimated, whereas metal oxide reduction (both Fe and Mn reduction) has probably been well underestimated.

  10. Potential oxygen demand of sediments from Lake Erie

    USGS Publications Warehouse

    Schloesser, D.W.; Stickel, R.G.; Bridgeman, T.B.

    2005-01-01

    Dreissenid mussels (Dreissena polymorpha and D. bugensis) biodeposit large quantities of filtered materials (i.e., feces and pseudofeces) directly on bottom substrates. These biodeposits have the potential to increase oxygen demand in sediments and overlying waters and thus contribute to hypolimnetic anoxia in Lake Erie. We hypothesized that higher potential oxygen demand of sediments would occur in areas near shore than in offshore hypolimnetic waters as a result of biodeposits carried by currents from littoral water where mussels, available foods, and biodeposits may be most abundant. To address this hypothesis, we measured potential oxygen demand (mg O2/L/120 h incubation) at six sites near shore and six sites offshore monthly June to September 2002 and August 2003. In addition, we compared, in post priori hypothesis, seven sites with and five sites without dreissenid mussels. Contrary to our hypotheses, potential oxygen demand was not significantly higher in bottles containing nearshore sediments than offshore sediments. Similarly, potential oxygen demand was not significantly higher at sites with dreissenid mussels than at sites without mussels. Data are consistent with pre-dreissenid studies which show oxygen demand and percent ash-free dry weights of sediments were higher offshore than near shore and ash-free dry weight of sediments decreased June to September. Therefore, the present study provides no evidence that dreissenid mussels have contributed directly-via biodeposition-to increased anoxia observed in Lake Erie in the mid to late 1990s.

  11. Pathways of organic carbon oxidation in three continental margin sediments

    NASA Technical Reports Server (NTRS)

    Canfield, D. E.; Jorgensen, B. B.; Fossing, H.; Glud, R.; Gundersen, J.; Ramsing, N. B.; Thamdrup, B.; Hansen, J. W.; Nielsen, L. P.; Hall, P. O.

    1993-01-01

    We have combined several different methodologies to quantify rates of organic carbon mineralization by the various electron acceptors in sediments from the coast of Denmark and Norway. Rates of NH4+ and Sigma CO2 liberation sediment incubations were used with O2 penetration depths to conclude that O2 respiration accounted for only between 3.6-17.4% of the total organic carbon oxidation. Dentrification was limited to a narrow zone just below the depth of O2 penetration, and was not a major carbon oxidation pathway. The processes of Fe reduction, Mn reduction and sulfate reduction dominated organic carbon mineralization, but their relative significance varied depending on the sediment. Where high concentrations of Mn-oxide were found (3-4 wt% Mn), only Mn reduction occurred. With lower Mn oxide concentrations more typical of coastal sediments, Fe reduction and sulfate reduction were most important and of a similar magnitude. Overall, most of the measured O2 flux into the sediment was used to oxidized reduced inorganic species and not organic carbon. We suspect that the importance of O2 respiration in many coastal sediments has been overestimated, whereas metal oxide reduction (both Fe and Mn reduction) has probably been well underestimated.

  12. Erosion and Sedimentation

    NASA Astrophysics Data System (ADS)

    Nelson, Jonathan

    According to legend, a conversation that took place more than 70 years ago between Albert Einstein and his eldest son, Hans Albert Einstein, gives rise to the favorite anecdote of every scientist or engineer working in the field of sediment transport. During this conversation, Hans told his father of his intent to carry out research on the mechanics of sediment transport. Albert had done some work in this area, notably on hindered settling in sediment suspensions, and he advised his son not to pursue study in this field, as he felt sediment transport was so difficult that it was intractable. Like many good sons before him, Hans ignored this advice, and went on to be one of a handful of prominent scientists that shaped modern sediment-transport theory and practice.

  13. Temperature sensitivity of methanogenesis in a thermokarst lake sediment core

    NASA Astrophysics Data System (ADS)

    Heslop, J. K.; Walter Anthony, K. M.; Grosse, G.; Anthony, P.; Bondurant, A.

    2016-12-01

    Little is known about temperature sensitivity of permafrost organic carbon (OC) mineralization over time scales of years to centuries following thaw. Due to their formation and thaw histories, taliks (thaw bulbs) beneath thermokarst lakes provide a unique natural laboratory from which to examine how permafrost thawed in saturated anaerobic conditions responds to changes in temperature following long periods of time since thaw. We anaerobically incubated samples from a 590 cm thermokarst lake sediment core near Fairbanks, Alaska at four temperatures (0, 3, 10, and 25 ºC) bracketing observed talik temperatures. We show that since initial thaw 400 yr BP CH4 production shifts from being most sensitive to at lower (0-3 ºC; Q10-EC=1.15E7) temperatures to being most sensitive at higher (10-25 ºC; Q10-EC=67) temperatures. Frozen sediments collected from beneath the talik, thawed at the commencement of the incubation, had significant (p ≤ 0.05) increases in CH4 production rates at lower temperatures but did not show significant CH4 production rate increases at higher temperatures (10-25 ºC). We hypothesize the thawing of sediments removed a major barrier to C mineralization, leading to rapid initial permafrost C mineralization and preferential mineralization of the most biolabile OC compounds. In contrast, sediments which had been thawed beneath the lake for longer periods of time did not experience statistically significant increases in CH4 production at lower temperatures (0-10 ºC), but had high temperature sensitivities at higher temperatures (10-25 ºC). We believe these rate increases are due to warmer temperatures in the experimental incubations crossing activation energy thresholds, allowing previously recalcitrant fractions of OC to be utilized, and/or the presence of different microbial communities adapted to thawed sediments. Recently-deposited sediments at shallow depths in the lake core experienced increases in CH4 production across all incubation

  14. Role of Central Amygdala Neuronal Ensembles in Incubation of Nicotine Craving

    PubMed Central

    Coen, Kathleen; Tamadon, Sahar; Hope, Bruce T.; Shaham, Yavin; Lê, A.D.

    2016-01-01

    The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. Here, we further characterized incubation of nicotine craving in the rat model by determining whether this incubation is observed after adolescent-onset nicotine self-administration. We also used the neuronal activity marker Fos and the Daun02 chemogenetic inactivation procedure to identify cue-activated neuronal ensembles that mediate incubation of nicotine craving. We trained adolescent and adult male rats to self-administer nicotine (2 h/d for 12 d) and assessed cue-induced nicotine seeking in extinction tests (1 h) after 1, 7, 14, or 28 withdrawal days. In both adult and adolescent rats, nicotine seeking in the relapse tests followed an inverted U-shaped curve, with maximal responding on withdrawal day 14. Independent of the withdrawal day, nicotine seeking in the relapse tests was higher in adult than in adolescent rats. Analysis of Fos expression in different brain areas of adolescent and adult rats on withdrawal days 1 and 14 showed time-dependent increases in the number of Fos-positive neurons in central and basolateral amygdala, orbitofrontal cortex, ventral and dorsal medial prefrontal cortex, and nucleus accumbens core and shell. In adult Fos–lacZ transgenic rats, selective inactivation of nicotine-cue-activated Fos neurons in central amygdala, but not orbitofrontal cortex, decreased “incubated” nicotine seeking on withdrawal day 14. Our results demonstrate that incubation of nicotine craving occurs after adolescent-onset nicotine self-administration and that neuronal ensembles in central amygdala play a critical role in this incubation. SIGNIFICANCE STATEMENT The craving response to smoking-associated cues in humans or to intravenous nicotine-associated cues in adult rats progressively increases or incubates after withdrawal. It is currently unknown whether incubation of craving

  15. Metabolic cost of incubation in the Laysan albatross and Bonin petrel.

    PubMed

    Grant, G S; Whittow, G C

    1983-01-01

    1. Oxygen consumption and carbon dioxide production were measured in resting and incubating Laysan albatrosses and Bonin petrels on Midway Atoll in the north central Pacific Ocean. 2. Incubation metabolism within the thermal neutral zone is less than or equal to resting metabolism in the albatross and petrel. 3. The respiratory quotients (0.64-0.72) during the long fasts indicate fat metabolism. 4. The estimated fractional water content of the albatross and petrel do not change during incubation fasts because water loss is balanced by metabolic water production.

  16. Incubation time of heterogeneous growth of islands in the mode of incomplete condensation

    NASA Astrophysics Data System (ADS)

    Dubrovskii, V. G.

    2016-11-01

    The incubation time necessary for the growth of surface islands on heterogeneous nucleation centers to begin has been theoretically analyzed depending on the material gas flow and surface temperature. It is shown that, under heterogeneous growth in the mode of incomplete condensation, the incubation time increases with temperature according to the Arrhenius law and is inversely proportional to the flow, irrespective of the mechanism of diffusion transport to islands. The results obtained have been qualitatively compared with the experimental data on the incubation time for three-dimensional GaN islands arising in the initial stage of self-induced growth of GaN nanowires.

  17. Distribution and rate of methane oxidation in sediments of the Florida everglades

    SciTech Connect

    King, G.M.; Roslev, P.; Skovgaard, H. )

    1990-09-01

    Rates of methane emission from intact cores were measured during anoxic dark and oxic light and dark incubations. Rates of methane oxidation were calculated on the basis of oxic incubations by using the anoxic emissions as an estimate of the maximum potential flux. This technique indicated that methane oxidation consumed up to 91% of the maximum potential flux in peat sediments but that oxidation was negligible in marl sediments. Oxygen microprofiles determined for intact cores were comparable to profiles measured in situ. Thus, the laboratory incubations appeared to provide a reasonable approximation of in situ activities. The magnitude of root-associated oxidation rates indicated that belowground plant surfaces may not markedly increase the total capacity for methane consumption. However, the data collectively support the notion that the distribution and activity of methane oxidation have a major impact on the magnitude of atmospheric fluxes from the Everglades.

  18. Trans-shell infection by pathogenic micro-organisms reduces the shelf life of non-incubated bird's eggs: a constraint on the onset of incubation?

    PubMed Central

    Cook, Mark I; Beissinger, Steven R; Toranzos, Gary A; Rodriguez, Roberto A; Arendt, Wayne J

    2003-01-01

    Many birds initiate incubation before clutch completion, which results in asynchronous hatching. The ensuing within-brood size disparity often places later-hatched nestlings at a developmental disadvantage, but the functional significance of the timing of the onset of incubation is poorly understood. Early incubation may serve to maintain the viability of early-laid eggs, which declines over time owing to the putative effects of ambient temperature. An unexplored risk to egg viability is trans-shell infection by micro-organisms. We experimentally investigated the rate and magnitude of microbial trans-shell infection of the egg, and the relative effects of ambient temperature and micro-organisms on hatching success. We show that infection of egg contents is prevalent and occurs within the time required to lay a clutch. The probability of infection depends on the climatic conditions, the exposure period and the phylogenetic composition of the eggshell microbiota. We also demonstrate that microbial infection and ambient temperature act independently to reduce egg viability considerably. Our results suggest that these two factors could affect the onset of avian incubation in a wide range of environments. PMID:14613609

  19. Analytical Ultracentrifugation: Sedimentation Velocity and Sedimentation Equilibrium

    PubMed Central

    Cole, James L.; Lary, Jeffrey W.; Moody, Thomas; Laue, Thomas M.

    2009-01-01

    Analytical ultracentrifugation (AUC) is a versatile and powerful method for the quantitative analysis of macromolecules in solution. AUC has broad applications for the study of biomacromolecules in a wide range of solvents and over a wide range of solute concentrations. Three optical systems are available for the analytical ultracentrifuge (absorbance, interference and fluorescence) that permit precise and selective observation of sedimentation in real time. In particular, the fluorescence system provides a new way to extend the scope of AUC to probe the behavior of biological molecules in complex mixtures and at high solute concentrations. In sedimentation velocity, the movement of solutes in high centrifugal fields is interpreted using hydrodynamic theory to define the size, shape and interactions of macromolecules. Sedimentation equilibrium is a thermodynamic method where equilibrium concentration gradients at lower centrifugal fields are analyzed to define molecule mass, assembly stoichiometry, association constants and solution nonideality. Using specialized sample cells and modern analysis software, researchers can use sedimentation velocity to determine the homogeneity of a sample and define whether it undergoes concentration-dependent association reactions. Subsequently, more thorough model-dependent analysis of velocity and equilibrium experiments can provide a detailed picture of the nature of the species present in solution and their interactions. PMID:17964931

  20. Bacterial methylmercury degradation in Florida Everglades peat sediment

    USGS Publications Warehouse

    Marvin-DiPasquale, M. C.; Oremland, R.S.

    1998-01-01

    Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently ???0.1 d-1 and decreased with sediment depth. Higher k values were observed when shorter incubation times and lower MeHg amendment levels were used, and k increased 2-fold as in-situ MeHg concentrations were approached. The average floc layer k was 0.046 ?? 0.023 d-1 (n = 17) for 1-2 day incubations. In-situ degradation rates were estimated to be 0.02-0.5 ng of MeHg (g of dry sediment)-1 d-1, increasing from eutrophied to pristine areas. Nitrate-respiring bacteria did not demethylate MeHg, and NO3- addition partially inhibited degradation in some cases. MeHg degradation rates were not affected by PO43- addition. 14CO2 production in all samples indicated that oxidative demethylation (OD) was an important degradation mechanism. OD occurred over 5 orders of magnitude of applied MeHg concentration, with lowest limits [1-18 ng of MeHg (g of dry sediment)-1] in the range of in-situ MeHg levels. Sulfate reducers and methanogens were the primary agents of anaerobic OD, although it is suggested that methanogens dominate degradation at in-situ MeHg concentrations. Specific pathways of OD by these two microbial groups are proposed.Methylmercury (MeHg) degradation was investigated along an eutrophication gradient in the Florida Everglades by quantifying 14CH4 and 14CO2 production after incubation of anaerobic sediments with [14C]MeHg. Degradation rate constants (k) were consistently ???0.1 d-1 and decreased with sediment depth. Higher k values were observed when shorter incubation times and lower MeHg amendment levels were used, and k increased 2-fold as in-situ MeHg concentrations were approached. The average floc layer k was 0.046??0.023 d-1 (n = 17) for 1-2 day incubations. In-situ degradation rates were estimated to be 0

  1. Amending soils with sediment material from constructed wetlands increases phosphorus sorption

    NASA Astrophysics Data System (ADS)

    Laakso, Johanna; Uusitalo, Risto; Leppänen, Janette; Yli-Halla, Markku

    2017-04-01

    Sediment of agricultural constructed wetlands (CWs) is comprised of matter eroded from surrounding fields. This material is rich in aluminium (Al) and iron (Fe) (hydr)oxides that have a high affinity for phosphorus (P). Sediment material returned to fields could therefore affect soil P retention characteristics. We incubated a clay soil with a high soil test P (STP, 24 mg PAc l-1; extracted with pH 4.65 ammonium acetate buffer) and a sandy loam with excessive STP (210 mg PAc l-1) for three weeks with increasing amounts of CW sediment: 0, 2, 5, 10 and 50% of the sample volume. After incubation, the soil-sediment mixtures were studied with the quantity/intensity (Q/I) technique, using chemical extractions and by exposing the mixtures to simulated rainfall. Sorption affinity for P regularly increased with increasing the sediment share of the mixtures, the 0% sediment content having the lowest and 50% sediment content the highest P sorption. With 0% sediment application, the value of equilibrium P concentration (EPC0) determined by Q/I technique, was 0.69 and 44.3 mg l-1 for clay soil and sandy loam, respectively. With 2-5% sediment amendment, the EPC0 decreased 13-36% for clay soil and 13-54% for sandy loam. The 50% sediment mixtures had EPC0 of 0.05 mg l-1 for both soils. At a practically feasible sediment addition rate of 5%, dissolved reactive P (DRP) in percolating water from simulated rainfall decreased by 55% in the clay soil and 54% in sandy loam (p<0.001 in both cases). Particulate-P (PP) also showed a decreasing trend with increasing sediment addition rate. Upon prolonged simulated rainfall, the decreasing effect of sediment on DRP and PP declined somewhat. The effects of sediment addition can be attributed partly to increased salt concentrations in the sediment, which have a short-term effect on P mobilisation, but mostly to increased concentrations of Al and Fe (hydr)oxides, increasing long-term P sorption capacity. Amending the soils with sediment material

  2. Improved measurement of extracellular enzymatic activities in subsurface sediments using competitive desorption treatment

    NASA Astrophysics Data System (ADS)

    Hoarfrost, Adrienne; Snider, Rachel; Arnosti, Carol

    2017-02-01

    Extracellular enzymatic activities initiate microbially-driven heterotrophic carbon cycling in subsurface sediments. While measurement of hydrolytic activities in sediments is fundamental to our understanding of carbon cycling, these measurements are often technically difficult due to sorption of organic substrates to the sediment matrix. Most methods that measure hydrolysis of organic substrates in sediments rely on recovery of a fluorophore or fluorescently-labeled target substrate from a sediment incubation. The tendency for substrates to sorb to sediments results in lower recovery of an added substrate, and can result in data that are unusable or difficult to interpret. We developed a treatment using competitive desorption of a fluorescently-labeled, high molecular weight organic substrate that improves recovery of the labeled substrate from sediment subsamples. Competitive desorption treatment improved recovery of the fluorescent substrate by a median of 66%, expanded the range of sediments for which activity measurements could be made, and was effective in sediments from a broad range of geochemical contexts. More reliable measurements of hydrolytic activities in sediments will yield usable and more easily interpretable data from a wider range of sedimentary environments, enabling better understanding of microbially-catalyzed carbon cycling in subsurface environments.

  3. The design of neonatal incubators: a systems-oriented, human-centered approach.

    PubMed

    Ferris, T K; Shepley, M M

    2013-04-01

    This report describes a multidisciplinary design project conducted in an academic setting reflecting a systems-oriented, human-centered philosophy in the design of neonatal incubator technologies. Graduate students in Architectural Design and Human Factors Engineering courses collaborated in a design effort that focused on supporting the needs of three user groups of incubator technologies: infant patients, family members and medical personnel. Design teams followed established human-centered design methods that included interacting with representatives from the user groups, analyzing sets of critical tasks and conducting usability studies with existing technologies. An iterative design and evaluation process produced four conceptual designs of incubators and supporting equipment that better address specific needs of the user groups. This report introduces the human-centered design approach, highlights some of the analysis findings and design solutions, and offers a set of design recommendations for future incubation technologies.

  4. The design of multi temperature and humidity monitoring system for incubator

    NASA Astrophysics Data System (ADS)

    Yu, Junyu; Xu, Peng; Peng, Zitao; Qiang, Haonan; Shen, Xiaoyan

    2017-01-01

    Currently, there is only one monitor of the temperature and humidity in an incubator, which may cause inaccurate or unreliable data, and even endanger the life safety of the baby. In order to solve this problem,we designed a multi-point temperature and humidity monitoring system for incubators. The system uses the STC12C5A60S2 microcontrollers as the sender core chip which is connected to four AM2321 temperature and humidity sensors. We select STM32F103ZET6 core development board as the receiving end,cooperating with Zigbee wireless transmitting and receiving module to realize data acquisition and transmission. This design can realize remote real-time observation data on the computer by communicating with PC via Ethernet. Prototype tests show that the system can effectively collect and display the information of temperature and humidity of multiple incubators at the same time and there are four monitors in each incubator.

  5. Kangaroo care compared to incubators in maintaining body warmth in preterm infants.

    PubMed

    Ludington-Hoe, S M; Nguyen, N; Swinth, J Y; Satyshur, R D

    2000-07-01

    Many preterm infants cared for in incubators do not experience Kangaroo Care (KC), skin-to-skin contact with their mothers, due to fear of body heat loss when being held outside the incubator. A randomized clinical trial of 16 KC and 13 control infants using a pretest-test-posttest design of three consecutive interfeeding intervals of 2.5 to 3.0 h duration each was conducted over 1 day. Infant abdominal and toe temperatures were measured in and out of the incubator; maternal breast temperature was measured during KC. Repeated measures ANOVA showed no change in abdominal temperature across all periods and between groups. Toe temperatures were significantly higher during KC than incubator periods, and maternal breast temperature met each infant's neutral thermal zone requirements within 5 min of onset of KC. Preterm infants similar to those studied here will maintain body warmth with up to 3 h of KC.

  6. Ostrich (Struthio camelus) embryonic development from 7 to 42 days of incubation.

    PubMed

    Brand, Z; Cloete, S W P; Malecki, I A; Brown, C R

    2017-04-01

    1. Hatching success of ostrich eggs is poor (50-60% of fertile eggs). The current study was designed to identify the timing of key stages in the development of the ostrich embryo. 2. Growth of both embryo and wing length during 42 d of incubation was comparable and approximately linear, with a more or less weekly doubling in size up to 35 d of incubation. 3. The embryo eye size increased more rapidly than beak length and reached a maximum of ~16.2 mm by 28 d of incubation, whereas beak length increased continuously until hatching at 42 d. 4. Linear regression equations were derived from morphometric measurements of embryos between 7 and 42 d. 5. Information stemming from these results can be used to estimate the age of dead-in-shell embryos in an attempt to identify timing of incubation problems that potentially result in low hatchability of fertile eggs.

  7. Science incubators: synthesis centers and their role in the research ecosystem.

    PubMed

    Rodrigo, Allen; Alberts, Susan; Cranston, Karen; Kingsolver, Joel; Lapp, Hilmar; McClain, Craig; Smith, Robin; Vision, Todd; Weintraub, Jory; Wiegmann, Brian

    2013-01-01

    How should funding agencies enable researchers to explore high-risk but potentially high-reward science? One model that appears to work is the NSF-funded synthesis center, an incubator for community-led, innovative science.

  8. Incubation temperature manipulation during fetal development reduces adiposity of broiler hatchlings.

    PubMed

    Almeida, V R; Morita, V S; Sgavioli, S; Vicentini, T I; Castiblanco, D M C; Boleli, I C

    2016-02-01

    Broilers are known as an efficient source of lean meat. Genetic selection resulted in broiler strains with large body size and fast growth, but a concomitant increase in fat deposition also occurred. Other than reducing nutrient intake, there is a lack of alternative methods to control body fat composition of broilers. The present study assessed whether incubation temperature (machine temperatures: 36ºC, 37.5ºC, and 39ºC; eggshell temperatures: 37.4 ± 0.08°C, 37.8 ± 0.15ºC, and 38.8 ± 0.33°C, respectively.) from d 13 affects broiler hatchling fat deposition. We analyzed adipocyte hypertrophy and proliferation in 3 body regions; weight and chemical composition of yolk-free chicks and yolk sacs; and serum lipid profile. Increased incubation temperature reduced abdominal and cervical adipocyte size. Independently of temperature, cervical adipocytes were smaller and showed higher proliferation than adipocytes in the abdominal and thigh regions. Smaller cervical adipocytes were observed in birds from eggs incubated at 36ºC and 39ºC. With regard to weight and composition of chicks, ash content as a percentage of dry matter was the only variable affected by temperature; it was higher in chicks from eggs incubated at 36ºC than at 39ºC and showed no significant difference between chicks incubated at 39ºC and 37.5ºC. Absolute and relative weights of yolk sacs were higher from eggs incubated at 39ºC than at 36ºC, and these two treatments did not differ from the 37.5ºC control. Absolute measures of yolk sac lipids, moisture, dry matter, and crude protein content were lower in chicks from eggs incubated at 36ºC, and no significant differences were found for these variables between chicks from eggs incubated at 37.5ºC and 39ºC. Hatchlings from eggs incubated at 36°C had significantly higher cholesterol levels than chicks incubated at the other 2 temperatures, but no additional effects on blood lipids were detected. Incubation temperature manipulation during

  9. Assessing the toxicity of sediments using the medaka embryo-larval assay and 2 other bioassays.

    PubMed

    Barhoumi, Badreddine; Clérandeau, Christelle; Landi, Laure; Pichon, Anaïk; Le Bihanic, Florane; Poirier, Dominique; Anschutz, Pierre; Budzinski, Hélène; Driss, Mohamed Ridha; Cachot, Jérôme

    2016-09-01

    Sediments are sinks for aquatic pollutants, and analyzing toxicity in such complex matrices is still challenging. To evaluate the toxicity of bioavailable pollutants accumulated in sediments from the Bizerte lagoon (Tunisia), a novel assay, the medaka embryo-larval assay by sediment contact, was applied. Japanese medaka (Oryzias latipes) embryos were incubated in direct contact with sediment samples up to hatching. Lethal and sublethal adverse effects were recorded in embryos and larvae up to 20 d postfertilization. Results from medaka embryo-larval assay were compared with cytotoxicity (Microtox®), genotoxicity (SOS chromotest), and pollutant content of sediments. The results highlight differences in the contamination profile and toxicity pattern between the different studied sediments. A significant correlation was shown between medaka embryo-larval assay by sediment contact and SOS chromotest responses and concentrations of most organic pollutants studied. No correlation was shown between pollutant levels and Microtox. According to the number of sediment samples detected as toxic, medaka embryo-larval assay by sediment contact was more sensitive than Microtox, which in turn was more sensitive than the SOS chromotest; and medaka embryo-larval assay by sediment contact allowed sediment toxicity assessment of moderately polluted sediments without pollutant extraction and using an ecologically realistic exposure scenario. Although medaka embryo-larval assay by sediment contact should be tested on a larger sample set, the results show that it is sensitive and convenient enough to monitor the toxicity of natural sediments. Environ Toxicol Chem 2016;35:2270-2280. © 2016 SETAC. © 2016 SETAC.

  10. External Service Providers to the National Security Technology Incubator: Formalization of Relationships

    SciTech Connect

    2008-04-30

    This report documents the formalization of relationships with external service providers in the development of the National Security Technology Incubator (NSTI). The technology incubator is being developed as part of the National Security Preparedness Project (NSPP), funded by a Department of Energy (DOE)/National Nuclear Security Administration (NNSA) grant. This report summarizes the process in developing and formalizing relationships with those service providers and includes a sample letter of cooperation executed with each provider.

  11. Particle size alterations of feedstuffs during in situ neutral detergent fiber incubation.

    PubMed

    Krämer, M; Nørgaard, P; Lund, P; Weisbjerg, M R

    2013-07-01

    Particle size alterations during neutral detergent fiber (NDF) determination and in situ rumen incubation were analyzed by dry sieving and image analysis to evaluate the in situ procedure for estimation of NDF degradation parameters and indigestible NDF concentration in terms of particle size. Early-cut and late-cut grass silages, corn silage, alfalfa silage, rapeseed meal, and dried distillers grains were examined. Treatments were (1) drying and grinding of forage samples and grinding of concentrates; (2) neutral detergent-soluble (NDS) extraction; (3) machine washing and NDS extraction; (4) 24-h rumen incubation, machine washing, and NDS extraction; and (5) 288-h rumen incubation, machine washing, and NDS extraction. Degradation profiles for potentially degradable NDF were determined and image analysis was used to estimate particle size profiles and thereby the risk for particle loss. Particle dimensions changed during NDF determination and in situ rumen incubation and variations depended on feedstuff and treatment. Corn silage and late-cut grass silage varied most in particle area among feedstuffs, with an increase of 139% between 0 and 24h and a decrease of 77% between 24 and 288 h for corn silage and a decrease of 74% for late-cut grass silage between 24- and 288-h in situ rumen incubation. Especially for late-cut grass silage residues after 288 h in situ rumen incubation, a high mass proportion in the critical zone for escape was found. Particle area decreased linearly with increasing incubation time. Particle loss during in situ rumen incubation cannot be excluded and is likely to vary among feedstuffs.

  12. Avian embryo monitoring during incubation using multi-channel diffuse speckle contrast analysis

    PubMed Central

    Yeo, Chaebeom; Park, Hyun-cheol; Lee, Kijoon; Song, Cheol

    2015-01-01

    Determining the survival rate of avian embryos during incubation is essential for cost-saving in the poultry industry. A multi-channel diffuse speckle contrast analysis (DSCA) system, comprising four optical fiber channels, is proposed to achieve noninvasive in vivo measurements of deep tissue flow. The system was able to monitor chick embryo vital signs over the entire incubation period. Moreover, it proved useful in distinguishing between chick embryos in healthy and weakened conditions. PMID:26819820

  13. AMPA Receptor Plasticity in Accumbens Core Contributes to Incubation of Methamphetamine Craving.

    PubMed

    Scheyer, Andrew F; Loweth, Jessica A; Christian, Daniel T; Uejima, Jamie; Rabei, Rana; Le, Tuan; Dolubizno, Hubert; Stefanik, Michael T; Murray, Conor H; Sakas, Courtney; Wolf, Marina E

    2016-11-01

    The incubation of cue-induced drug craving in rodents provides a model of persistent vulnerability to craving and relapse in human addicts. After prolonged withdrawal, incubated cocaine craving depends on strengthening of nucleus accumbens (NAc) core synapses through incorporation of Ca(2+)-permeable alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors (CP-AMPARs). Through metabotropic glutamate receptor 1 (mGluR1)-mediated synaptic depression, mGluR1 positive allosteric modulators remove CP-AMPARs from these synapses and thereby reduce cocaine craving. This study aimed to determine if similar plasticity accompanies incubation of methamphetamine craving. Rats self-administered saline or methamphetamine under extended-access conditions. Cue-induced seeking tests demonstrated incubation of methamphetamine craving. After withdrawal periods ranging from 1 to >40 days, rats underwent one of the following procedures: 1) whole-cell patch clamp recordings to characterize AMPAR transmission, 2) intra-NAc core injection of the CP-AMPAR antagonist 1-naphthyl acetyl spermine followed by a seeking test, or 3) systemic administration of a mGluR1 positive allosteric modulator followed by a seeking test. Incubation of methamphetamine craving was associated with CP-AMPAR accumulation in NAc core, and both effects were maximal after ~1 week of withdrawal. Expression of incubated craving was decreased by intra-NAc core 1-naphthyl acetyl spermine injection or systemic mGluR1 positive allosteric modulator administration. These results are the first to demonstrate a role for the NAc in the incubation of methamphetamine craving and describe adaptations in synaptic transmission associated with this model. They establish that incubation of craving and associated CP-AMPAR plasticity occur much more rapidly during withdrawal from methamphetamine compared with cocaine. However, a common mGluR1-based therapeutic strategy may be helpful for recovering cocaine and methamphetamine

  14. Incubation behavior of king eiders on the coastal plain of Northern Alaska

    USGS Publications Warehouse

    Bentzen, R.L.; Powell, A.N.; Phillips, Laura M.; Suydam, R.S.

    2010-01-01

    Incubating birds balance their energetic demands during incubation with the needs of the developing embryos. Incubation behavior is correlated with body size; larger birds can accumulate more endogenous reserves and maintain higher incubation constancy. King eiders (Somateria spectabilis) contend with variable and cold spring weather, little nesting cover, and low food availability, and thus are likely to rely heavily on endogenous reserves to maintain high incubation constancy. We examined the patterns of nest attendance of king eiders at Teshekpuk and Kuparuk, Alaska (2002-2005) in relation to clutch size, daily temperature, and endogenous reserves to explore factors controlling incubation behavior. Females at Kuparuk had higher constancy (98.5 ?? 0.2%, n = 30) than at Teshekpuk (96.9 ?? 0.8%, n = 26), largely due to length of recesses. Mean recess length ranged from 21.5 to 23.7 min at Kuparuk, and from 28.5 to 51.2 min at Teshekpuk. Mean body mass on arrival at breeding grounds (range; Teshekpuk 1,541-1,805, Kuparuk 1,616-1,760), and at the end of incubation (Teshekpuk 1,113-1,174, Kuparuk 1,173-1,183), did not vary between sites or among years (F < 1.1, P > 0.3). Daily constancy increased 1% with every 5??C increase in minimum daily temperature (??min = 0.005, 95% CI 0.002, 0.009). Higher constancy combined with similar mass loss at Kuparuk implies that females there met foraging requirements with shorter recesses. Additionally, females took more recesses at low temperatures, suggesting increased maintenance needs which were potentially ameliorated by feeding during these recesses, indicating that metabolic costs and local foraging conditions drove incubation behavior. ?? 2010 US Government.

  15. Study of the formation of the primary (137)Cs vertical profile in the organic matter-rich sediments.

    PubMed

    Tarasiuk, N; Lukšienė, B; Maceika, E; Filistovičius, V; Žukauskaitė, Z; Nedzveckienė, L; Buivydas, Š

    2017-10-01

    A laboratory study of the formation of the primary vertical profile of the (137)Cs activity concentration in the anaerobic organic matter-rich sediments was carried out. The incubation was performed using sediment baths method (initial thickness of the water layer over the sediments ∼40 cm, initial radiocesium activity concentration in water ∼14.53 Bq·L(-1)). An exponential profile (R(2)∼0.999) with the half-height width of ∼0.65 cm was formed after ∼32 days of the incubation. A further course of the experiment (sediments were sampled after 64, 130 and 293 days of the incubation) revealed deviations in the form of the radiocesium activity concentration profile related to the appearance of the additional Gauss factor with the increasing half-height width of ∼1.2, ∼1.3 and ∼3 cm, respectively. In spite of the evident growth of the half-height width, the radiocesium migration rate decreased from 0.02 cm·day(-1) for the first 32 days of incubation down to 0.009 cm·day(-1) at the end of the incubation experiment. Such a time-dependent decrease in the radiocesium migration is possibly related to the beginning of the second radiocesium migration phase depending on the retardation factor. Besides diffusion, the formation of vertical profiles of radiocesium activity concentrations in sediments was additionally induced by effects of buoyancy of the upper sediment layer due to the seepage of the above lying water into sediments. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Shifts in Identity and Activity of Methanotrophs in Arctic Lake Sediments in Response to Temperature Changes

    PubMed Central

    He, Ruo; Wooller, Matthew J.; Pohlman, John W.; Quensen, John; Tiedje, James M.

    2012-01-01

    Methane (CH4) flux to the atmosphere is mitigated via microbial CH4 oxidation in sediments and water. As arctic temperatures increase, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is important to predicting future CH4 emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), and pyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C, and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH4 oxidation activity was measured in microcosm incubations containing sediments at all temperatures, with the highest CH4 oxidation potential of 37.5 μmol g−1 day−1 in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and of the 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in 13C-labeled DNA obtained by SIP demonstrated that the type I methanotrophs Methylobacter, Methylomonas, and Methylosoma dominated carbon acquisition from CH4 in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature. Methylotrophs were also abundant in the microbial community that derived carbon from CH4, especially in the deeper sediments (depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R = 0.82) with the relative abundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophic communities in arctic lake sediments respond to temperature variations. PMID:22522690

  17. Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes

    USGS Publications Warehouse

    He, Ruo; Wooller, Matthew J.; Pohlman, John W.; Quensen, John; Tiedje, James M.; Leigh, Mary Beth

    2012-01-01

    Methane (CH4) flux to the atmosphere is mitigated via microbial CH4 oxidation in sediments and water. As arctic temperaturesincrease, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is importantto predicting future CH4 emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), andpyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C,and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH4 oxidation activitywas measured in microcosm incubations containing sediments at all temperatures, with the highest CH4 oxidation potential of37.5 mol g1 day1 in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and ofthe 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in 13C-labeled DNA obtained bySIP demonstrated that the type I methanotrophs Methylobacter, Methylomonas, and Methylosoma dominated carbon acquisitionfrom CH4 in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature.Methylotrophs were also abundant in the microbial community that derived carbon from CH4, especially in the deeper sediments(depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R0.82) with the relativeabundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophiccommunities in arctic lake sediments respond to temperature variations.

  18. Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes.

    PubMed

    He, Ruo; Wooller, Matthew J; Pohlman, John W; Quensen, John; Tiedje, James M; Leigh, Mary Beth

    2012-07-01

    Methane (CH(4)) flux to the atmosphere is mitigated via microbial CH(4) oxidation in sediments and water. As arctic temperatures increase, understanding the effects of temperature on the activity and identity of methanotrophs in arctic lake sediments is important to predicting future CH(4) emissions. We used DNA-based stable-isotope probing (SIP), quantitative PCR (Q-PCR), and pyrosequencing analyses to identify and characterize methanotrophic communities active at a range of temperatures (4°C, 10°C, and 21°C) in sediments (to a depth of 25 cm) sampled from Lake Qalluuraq on the North Slope of Alaska. CH(4) oxidation activity was measured in microcosm incubations containing sediments at all temperatures, with the highest CH(4) oxidation potential of 37.5 μmol g(-1) day(-1) in the uppermost (depth, 0 to 1 cm) sediment at 21°C after 2 to 5 days of incubation. Q-PCR of pmoA and of the 16S rRNA genes of type I and type II methanotrophs, and pyrosequencing of 16S rRNA genes in (13)C-labeled DNA obtained by SIP demonstrated that the type I methanotrophs Methylobacter, Methylomonas, and Methylosoma dominated carbon acquisition from CH(4) in the sediments. The identity and relative abundance of active methanotrophs differed with the incubation temperature. Methylotrophs were also abundant in the microbial community that derived carbon from CH(4), especially in the deeper sediments (depth, 15 to 20 cm) at low temperatures (4°C and 10°C), and showed a good linear relationship (R = 0.82) with the relative abundances of methanotrophs in pyrosequencing reads. This study describes for the first time how methanotrophic communities in arctic lake sediments respond to temperature variations.

  19. Influence of incubation conditions on hydrolysis efficiency and iodine enrichment in baker's yeast.

    PubMed

    Dolińska, Barbara; Zieliński, Michał; Dobrzański, Zbigniew; Chojnacka, Katarzyna; Opaliński, Sebastian; Ryszka, Florian

    2012-06-01

    The influence of incubation conditions, enzyme type, hydrolysis time, and potassium iodide concentration on hydrolysis and iodine enrichment were studied in supernatant and pellets of Saccharomyces cervisiae hydrolysates. The type of enzyme used and incubation time significantly influence hydrolysis efficiency and protein concentration in supernatant and pellet. The highest protein hydrolysis efficiency was obtained by 24-h incubation with papain. Significantly lower values were observed for pepsin and autolysis. The potassium iodide concentration influences the iodine content of supernatant and pellet, but not hydrolysis. Iodide enrichment of supernatant and pellet depends on the concentration of iodide using during incubation. High concentration of iodide and long incubation times were the conditions for optimal iodide enrichment and high-protein hydrolysates. The optimal hydrolysis efficiency and iodine enrichment were obtained during 24-h incubation with papain in a 4.5-mM potassium iodide medium. The efficiency reached 98.22% with iodine concentrations of 2,664.91 and 9,200.67 μg/g iodine in pellet and supernatant, respectively.

  20. Composition and location of simulated lake-shore redds influence incubation success in kokanee, Oncorhynchus nerka

    USGS Publications Warehouse

    Fincel, M.J.; Chipps, S.R.; Bennett, D.H.

    2009-01-01

    Methods for improving spawning habitat for lakeshore spawning kokanee, Oncorhynchus nerka (Walbaum), were explored by quantifying incubation success of embryos exposed to three substrate treatments in Lake Pend Oreille, Idaho, USA. Substrate treatments included no modification that used existing gravels in the lake (EXISTING), a cleaned substrate treatment where existing gravels were sifted in the water column to remove silt (CLEANED) and the addition of new, silt-free gravel (ADDED). Incubation success was evaluated using Whitlock-Vibert incubation boxes buried within each substrate treatment that contained recently fertilised embryos. Upon retrieval, live and dead sac fry and eyed eggs were enumerated to determine incubation success (sac fry and eyed eggs ?? 100/number of fertilised embryos). Incubation success varied significantly among locations and redd treatments. In general, incubation success among ADDED redds (0.0-13.0%) was significantly lower than that for EXISTING (1.4-61.0%) and CLEANED (0.4-62.5%) redds. Adding new gravel to spawning areas changed the morphometry of the gravel-water interface and probably exposed embryos to disturbance from wave action and reduced embryo survival. Moreover, efforts to improve spawning habitat for lakeshore spawning kokanee should consider water depth and location (e.g. protected shorelines) as important variables. Adding clean gravel to existing spawning areas may provide little benefit if water depth or lake-bottom morphometry are altered. ?? 2009 Blackwell Publishing Ltd.

  1. Exposing broiler eggs to green, red and white light during incubation.

    PubMed

    Archer, G S

    2017-02-08

    Previous work has shown that exposing broiler eggs to white light during incubation can improve hatchability and post-hatch animal welfare. It was hypothesized that due to how different wavelengths of light can affect avian physiology differently, and how pigmented eggshells filter light that different monochromatic wavelengths would have differential effects on hatchability and post-hatch animal welfare indicators. To determine, we incubated chicken eggs (n=6912) under either no light (dark), green light, red light or white light; the light level was 250 lux. White and red light were observed to increase hatch of fertile (P0.05). Fear response of during isolation and tonic immobility was reduced (P0.05) from dark incubated broilers. All light incubated broilers had lower (P<0.05) plasma corticosterone and higher (P<0.05) plasma serotonin concentrations than dark incubated broilers. These results indicate that white light and red light that is a component of it are possibly the key spectrum to improving hatchability and lower fear and stress susceptibility, whereas green light is not as effective. Incubating broiler eggs under these spectrums could be used to improve hatchery efficiency and post-hatch animal welfare at the same time.

  2. Incubating rainbow trout in soft water increased their later sensitivity to cadmium and zinc

    USGS Publications Warehouse

    Mebane, Christopher A.; Hennessy, Daniel P.; Dillon, Frank S.

    2010-01-01

    Water hardness is well known to affect the toxicity of some metals; however, reports on the influence of hardness during incubation or acclimation on later toxicity to metals have been conflicting. We incubated rainbow trout (Oncorhynchus mykiss) near the confluence of two streams, one with soft water and one with very-soft water (average incubation hardnesses of about 21 and 11 mg/L as CaCO3, respectively). After developing to the swim-up stage, the fish were exposed for 96-h to a mixture of cadmium (Cd) and zinc (Zn) in water with a hardness of 27 mg/L as CaCO3. The fish incubated in the higher hardness water were about two times more resistant than the fish incubated in the extremely soft water. This difference was similar or greater than the difference that would have been predicted by criteria hardness equations had the fish been tested in the different acclimation waters. We think it is plausible that the energy demands for fish to maintain homeostasis in the lower hardness water make the fish more sensitive to metals that inhibit ionoregulation such as Cd and Zn. We suggest that if important decisions were to be based upon test results, assumptions of adequate hardness acclimation should be carefully considered and short acclimation periods avoided. If practical, incubating rainbow trout in the control waters to be tested may reduce uncertainties in the possible influences of differing rearing water hardness on the test results.

  3. Adrenocortical suppression in highland chick embryos is restored during incubation at sea level.

    PubMed

    Salinas, Carlos E; Villena, Mercedes; Blanco, Carlos E; Giussani, Dino A

    2011-01-01

    By combining the chick embryo model with incubation at high altitude, this study tested the hypothesis that development at high altitude is related to a fetal origin of adrenocortical but not adrenomedullary suppression and that hypoxia is the mechanism underlying the relationship. Fertilized eggs from sea-level or high altitude hens were incubated at sea level or high altitude. Fertilized eggs from sea-level hens were also incubated at altitude with oxygen supplementation. At day 20 of incubation, embryonic blood was taken for measurement of plasma corticotropin, corticosterone, and Po(2). Following biometry, the adrenal glands were collected and frozen for measurement of catecholamine content. Development of chick embryos at high altitude led to pronounced adrenocortical blunting, but an increase in adrenal catecholamine content. These effects were similar whether the fertilized eggs were laid by sea-level or high altitude hens. The effects of high altitude on the stress axes were completely prevented by incubation at high altitude with oxygen supplementation. When chick embryos from high altitude hens were incubated at sea level, plasma hormones and adrenal catecholamine content were partially restored toward levels measured in sea-level chick embryos. There was a significant correlation between adrenocortical blunting and elevated adrenal catecholamine content with both asymmetric growth restriction and fetal hypoxia. The data support the hypothesis tested and provide evidence to isolate the direct contribution of developmental hypoxia to alterations in the stress system.

  4. Incubation period for campylobacteriosis and its importance in the estimation of incidence related to travel.

    PubMed

    Horn, B J; Lake, R J

    2013-10-03

    Differentiation between travel-related and domestic cases of infectious disease is important in managing risk. Incubation periods of cases from several outbreaks of campylobacteriosis in Canada, Europe, and the United States with defined exposure time of less than 24 hours were collated to provide information on the incubation period distribution. This distribution was consistent across the varied outbreaks considered, with 84% (702/832) of cases having an incubation period of four days or less and 1% having an incubation period of eight days or more. The incubation period distribution was incorporated into a model for the number of travel-related cases presenting with symptom onset at given dates after return to their country of residence. Using New Zealand notification data between 2006 and 2010 for cases who had undertaken foreign travel within 10 days prior to symptom onset, we found that 29.6% (67/227 cases; 95% confidence interval (CI): 28.3–30.8%) of these cases were likely to have been domestic cases. When cases with symptom onset prior to arrival were included, the probable domestic cases represented 11.8% (67/571; 95% CI: 11.2–12.3%). Consideration of incubation time distributions and consistent collection of travel start/end dates with symptom onset dates would assist attribution of cases to foreign travel.

  5. Incubation temperature affects the immune function of hatchling soft-shelled turtles, Pelodiscus sinensis

    PubMed Central

    Dang, Wei; Zhang, Wen; Du, Wei-Guo

    2015-01-01

    Identifying how developmental temperature affects the immune system is critical for understanding how ectothermic animals defend against pathogens and their fitness in the changing world. However, reptiles have received little attention regarding this issue. We incubated eggs at three ecologically relevant temperatures to determine how incubation temperature affects the immune function of hatchling soft-shelled turtles, Pelodiscus sinensis. When exposed to bacterial infections, hatchlings from 24 °C had lower cumulative mortalities (55%, therefore, higher immunocompetence) than those from 28 °C (85%) or 32 °C (100%). Consistent with higher immunocompetence, hatchlings from low incubation temperature had higher IgM, IgD, and CD3γ expressions than their counterparts from the other two higher incubation temperatures. Conversely, the activity of immunity-related enzymes did not match the among-temperature difference in immune function. Specifically, enzyme activity was higher at intermediate temperatures (alkaline phosphatase) or was not affected by incubation temperature (acid phosphatase, lysozyme). Our study is the first to provide unequivocal evidence (at the molecular and organismal level) about the significant effect of incubation temperature on offspring immunity in reptiles. Our results also indicate that the reduced immunity induced by high developmental temperatures might increase the vulnerability of reptiles to the outbreak of diseases under global warming scenarios. PMID:26028216

  6. Foot-mediated incubation: Nazca booby (Sula granti) feet as surrogate brood patches.

    PubMed

    Morgan, Stephanie M; Ashley-Ross, Miriam A; Anderson, David J

    2003-01-01

    Incubation in most avian species involves transferring heat from parent to egg through a highly vascularized brood patch. Some birds, however, do not develop a brood patch. Unusual among birds, these species hold their eggs under the webs of their feet, but the role of the feet in heat transfer is uncertain. Often the webs are positioned between the feathered abdomen and the egg during incubation, suggesting that either the abdomen, the feet, or both could transfer heat to the egg. We studied heat transfer from foot webs to eggs during incubation in Nazca boobies by spatially separating the feet from the abdomen using an oversized egg. We found that feet transfer heat to eggs independently of any heat that may be transferred from the abdomen. In addition, we found that incubating boobies had significantly greater vascularization in their foot webs, measured as a percentage of web area covered by vessels, than nonincubating boobies. We also found that males, whether incubating or nonincubating, had significantly less web vascularization than females. We concluded that vascularized Nazca booby feet function in the same way during incubation that vascularized brood patches do, acting as surrogate brood patches.

  7. Incubation under climate warming affects learning ability and survival in hatchling lizards.

    PubMed

    Dayananda, Buddhi; Webb, Jonathan K

    2017-03-01

    Despite compelling evidence for substantial individual differences in cognitive performance, it is unclear whether cognitive ability influences fitness of wild animals. In many animals, environmental stressors experienced in utero can produce substantial variation in the cognitive abilities of offspring. In reptiles, incubation temperatures experienced by embryos can influence hatchling brain function and learning ability. Under climate warming, the eggs of some lizard species may experience higher temperatures, which could affect the cognitive abilities of hatchlings. Whether such changes in cognitive abilities influence the survival of hatchlings is unknown. To determine whether incubation-induced changes in spatial learning ability affect hatchling survival, we incubated velvet gecko, Amalosia lesueurii, eggs using two fluctuating temperature regimes to mimic current (cold) versus future (hot) nest temperatures. We measured the spatial learning ability of hatchlings from each treatment, and released individually marked animals at two field sites in southeastern Australia. Hatchlings from hot-incubated eggs were slower learners than hatchlings from cold-incubated eggs. Survival analyses revealed that hatchlings with higher learning scores had higher survival than hatchlings with poor learning scores. Our results show that incubation temperature affects spatial learning ability in hatchling lizards, and that such changes can influence the survival of hatchlings in the wild.

  8. Leaching of soils during laboratory incubations does not affect soil organic carbon mineralisation but solubilisation.

    PubMed

    González-Domínguez, Beatriz; Studer, Mirjam S; Hagedorn, Frank; Niklaus, Pascal A; Abiven, Samuel

    2017-01-01

    Laboratory soil incubations provide controlled conditions to investigate carbon and nutrient dynamics; however, they are not free of artefacts. As carbon and nitrogen cycles are tightly linked, we aimed at investigating whether the incubation-induced accumulation of mineral nitrogen (Nmin) biases soil organic carbon (SOC) mineralisation. For this, we selected two soils representative of the C:N ratio values found in European temperate forests, and applied two incubation systems: 'closed' beakers and 'open' microlysimeters. The latter allowed leaching the soil samples during the incubation. By the end of the 121-day experiment, the low C:N soil significantly accumulated more Nmin in beakers (5.12 g kg-1 OC) than in microlysimeters (3.00 g kg-1 OC) but there was not a significant difference in SOC mineralisation at any point of the experiment. On the other hand, Nmin did not accumulate in the high C:N soil but, by the end of the experiment, leaching had promoted 33.9% more SOC solubilisation than beakers. Therefore, we did not find evidence that incubation experiments introduce a bias on SOC mineralisation. This outcome strengthens results from soil incubation studies.

  9. A review of factors influencing the availability of dissolved oxygen to incubating salmonid embryos

    NASA Astrophysics Data System (ADS)

    Greig, S. M.; Sear, D. A.; Carling, P. A.

    2007-01-01

    Previous investigations into factors influencing incubation success of salmonid progeny have largely been limited to the development of empirical relationships between characteristics of the incubation environment and survival to emergence. It is suggested that adopting a process-based approach to assessing incubation success aids identification of the precise causes of embryonic mortalities, and provides a robust framework for developing and implementing managerial responses.Identifying oxygen availability within the incubation environment as a limiting factor, a comprehensive review of trends in embryonic respiration, and processes influencing the flux of oxygenated water through gravel riverbeds is provided. The availability of oxygen to incubating salmonid embryos is dependent on the exchange of oxygenated water with the riverbed, and the ability of the riverbed gravel medium to transport this water at a rate and concentration appropriate to support embryonic respiratory requirements. Embryonic respiratory trends indicate that oxygen consumption varies with stage of development, ambient water temperature and oxygen availability. The flux of oxygenated water through the incubation environment is controlled by a complex interaction of intragravel and extragravel processes and factors. The processes driving the exchange of channel water with gravel riverbeds include bed topography, bed permeability, and surface roughness effects. The flux of oxygenated water through riverbed gravels is controlled by gravel permeability, coupling of surface-subsurface flow and oxygen demands imposed by materials infiltrating riverbed gravels. Temporally and spatially variable inputs of groundwater can also influence the oxygen concentration of interstitial water. Copyright

  10. Fitness cost of incubation in great tits (Parus major) is related to clutch size.

    PubMed

    de Heij, Maaike E; van den Hout, Piet J; Tinbergen, Joost M

    2006-09-22

    Life-history theory predicts that parents produce the number of offspring that maximizes their fitness. In birds, natural selection on parental decisions regarding clutch size may act during egg laying, incubation or nestling phase. To study the fitness consequences of clutch size during the incubation phase, we manipulated the clutch sizes during this phase only in three breeding seasons and measured the fitness consequences on the short and the long term. Clutch enlargement did not affect the offspring fitness of the manipulated first clutches, but fledging probability of the subsequent clutch in the same season was reduced. Parents incubating enlarged first clutches provided adequate care for the offspring of their first clutches during the nestling phase, but paid the price when caring for the offspring of their second clutch. Parents that incubated enlarged first clutches had lower local survival in the 2 years when the population had a relatively high production of second clutches, but not in the third year when there was a very low production of second clutches. During these 2 years, the costs of incubation were strong enough to change positive selection, as established by brood size manipulations in this study population, into stabilizing selection through the negative effect of incubation on parental fitness.

  11. Incubation temperature affects growth and energy metabolism in blue tit nestlings.

    PubMed

    Nord, Andreas; Nilsson, Jan-Åke

    2011-11-01

    Because the maintenance of proper developmental temperatures during avian incubation is costly to parents, embryos of many species experience pronounced variation in incubation temperature. However, the effects of such temperature variation on nestling development remain relatively unexplored. To investigate this, we artificially incubated wild blue tit (Cyanistes caeruleus L.) clutches at 35.0°, 36.5°, or 38.0°C for two-thirds of the incubation period. We returned clutches to their original nests before hatching and subsequently recorded nestling growth and resting metabolic rate. The length of the incubation period decreased with temperature, whereas hatching success increased. Nestlings from the lowest incubation temperature group had shorter tarsus lengths at 2 weeks of age, but body mass and wing length were not affected by temperature. In addition, nestlings from the lowest temperature group had a significantly higher resting metabolic rate compared with mid- and high-temperature nestlings, which may partly explain observed size differences between the groups. These findings suggest that nest microclimate can influence nestling phenotype, but whether observed differences carry over to later life-history stages remains unknown.

  12. Metabolic responses to chronic hypoxic incubation in embryonic American alligators (Alligator mississippiensis).

    PubMed

    Crossley, Dane A; Ling, Rick; Nelson, Derek; Gillium, Taylor; Conner, Justin; Hapgood, James; Elsey, Ruth M; Eme, John

    2017-01-01

    Chronic hypoxic incubation is a common tool used to study developmental changes in reduced O2 conditions, and it has been useful for identifying phenotypically plastic periods during ontogeny in laboratory settings. Reptilian embryos can be subjected to natural hypoxia due to nesting strategy, and recent studies have been important in establishing the phenotypic responses of several species to low developmental oxygen. In particular, the cardiovascular responses of American alligators (Alligator mississippiensis) to low developmental oxygen have been detailed, including a substantial cardiac enlargement that may support a higher mass specific metabolic rate. However, embryo mass-specific metabolic demands of hypoxic incubated alligator embryos have not been measured. In this study, alligator eggs were incubated in 10% O2 (H) or 21% O2 (N) environments for the entire course of embryonic development. Acute metabolic measures in 21% and 10% O2 were taken for both H and N groups. We hypothesized that acute 10% O2 exposure has no impact on metabolic rate of embryonic alligators, and that metabolic rate is unaffected by chronic hypoxic incubation when studied in embryos measured at 21% O2. Our findings suggest phenotypic changes resulting from hypoxic incubation early in incubation, in particular relative cardiac enlargement, enable embryonic alligators to sustain metabolic rate during acute hypoxic exposure. Copyright © 2016 Elsevier Inc. All rights reserved.

  13. Incubation of Conditioning-Specific Reflex Modification: Implications for Post Traumatic Stress Disorder

    PubMed Central

    Schreurs, Bernard G.; Smith-Bell, Carrie A.; Burhans, Lauren B.

    2011-01-01

    Incubation of fear has been used to account for the delayed manifestation of symptoms of fear and anxiety including the delayed onset of Post Traumatic Stress Disorder (PTSD). We have shown the utility of classical conditioning-specific modification of the rabbit nictitating membrane response (NMR) as a model of PTSD. This modification includes an exaggeration in the size and a change in the timing of the unconditioned NMR after several days of classical conditioning. To assess the effects of incubation on conditioning-specific modification, we measured changes in responding as a function of the time between classical conditioning and NMR testing. After just one day of classical conditioning resulting in modest levels of learning, increases in response size were an inverted-U shaped function of days of incubation with little if any change occurring one and ten days after training but significant change occurring after six days. The incubation effect persisted for a week. An unpaired control group showed no change in the size of the response confirming the incubation effect was associative. The results bear a striking resemblance to symptoms of PTSD that do not always occur immediately after trauma and become exacerbated over time and then persist. They point to a window when incubation can exacerbate symptoms and speak to the vulnerability of re-experiencing trauma too soon. This could be a serious problem for military or emergency personnel recalled to combat or a disaster site without sufficient time to deal with the effects of their initial experiences. PMID:21803372

  14. Sucrose incubation increases freezing tolerance of asparagus (Asparagus officinalis L.) embryogenic cell suspensions.

    PubMed

    Jitsuyama, Y; Suzuki, T; Harada, T; Fujikawa, S

    2002-01-01

    The freezing tolerance of asparagus (Asparagus officinalis L.) embryogenic cells, as determined by electrolyte leakage, was increased by the incubation of samples in medium containing 0.8 M sucrose. To elucidate the mechanism involved, we investigated the changes in soluble carbohydrates, cell ultrastructure and proteins accompanying the increase in freezing tolerance following incubation in sugar-rich medium. During sugar incubation, the intracellular sucrose content increased from 67 mol g-1FW to 429 mol g-1FW; it was also metabolized into fructose and glucose, as determined by high-performance liquid chromatography. Microscopy revealed that sugar incubation induced plasmolysis of embryogenic cells and drastic changes in cell ultrastructure with the appearance of rough endoplasmic reticulum (rER). Furthermore, immunoblotting analysis with anti-dehydrin antiserum revealed that a dehydrin-like protein appeared only when maximal freezing tolerance was induced by sugar incubation. These results suggest that freezing tolerance of asparagus embryogenic cells is increased by a complex mechanism involving notably changes in cell ultrastructure and accumulation of certain sugars and proteins during sugar incubation.

  15. Determinants of incubation period: do reptilian embryos hatch after a fixed total number of heart beats?

    PubMed

    Du, Wei-Guo; Radder, Rajkumar S; Sun, Bo; Shine, Richard

    2009-05-01

    The eggs of birds typically hatch after a fixed (but lineage-specific) cumulative number of heart beats since the initiation of incubation. Is the same true for non-avian reptiles, despite wide intraspecific variation in incubation period generated by variable nest temperatures? Non-invasive monitoring of embryo heart beat rates in one turtle species (Pelodiscus sinensis) and two lizards (Bassiana duperreyi and Takydromus septentrionalis) show that the total number of heart beats during embryogenesis is relatively constant over a wide range of warm incubation conditions. However, incubation at low temperatures increases the total number of heart beats required to complete embryogenesis, because the embryo spends much of its time at temperatures that require maintenance functions but that do not allow embryonic growth or differentiation. Thus, cool-incubated embryos allocate additional metabolic effort to maintenance costs. Under warm conditions, total number of heart beats thus predicts incubation period in non-avian reptiles as well as in birds (the total number of heart beats are also similar); however, under the colder nest conditions often experienced by non-avian reptiles, maintenance costs add significantly to total embryonic metabolic expenditure.

  16. Use of tri-gas incubator for routine culture of Campylobacter species from fecal specimens.

    PubMed Central

    Thompson, J S; Hodge, D S; Smith, D E; Yong, Y A

    1990-01-01

    We evaluated a tri-gas incubator for Campylobacter isolation to be used instead of an anaerobic jar. Fecal specimens were cultured in duplicate onto charcoal selective medium and incubated at 43 degrees C for 48 h in two different environments: a tri-gas incubator (Forma Scientific) adjusted to provide an atmosphere of 10% CO2, 10% O2, and the balance N2; and evacuated anaerobic jars with a replacement gas mixture of 10% CO2, 5% O2, and 85% N2. A total of 106 Campylobacter jejuni and 8 Campylobacter coli isolates were obtained from 2,348 stool specimens. Of the positive specimens, 113 isolates came from the incubator and 111 isolates came from the anaerobic jars. An additional 32 previously positive specimens were replated onto charcoal selective medium and retested by both methods. We recovered 27 C. jejuni isolates, 26 isolates by each method. The isolates from the incubator typically produced discrete colonies, while the isolates from the anaerobic jar showed some degree of swarming in colony formation. The tri-gas incubator provided a cost-effective method for culturing Campylobacter spp. PMID:2280012

  17. An application of computational fluid mechanics to the air flow in an infant incubator.

    PubMed

    Yamaguchi, T; Hanai, S; Horio, H; Hasegawa, T

    1992-01-01

    An application of the computational fluid mechanical method to the air flow in a two-dimensional model of an infant incubator was described. The air flow in a numerical model was simulated and the Navier-Stokes equations were directly solved using a finite-volume method incorporating a body-fitted coordinate system on a mini-supercomputer. The model was based on a real infant incubator, slightly simplified for the sake of computing speed, and included a model of a baby. The number of computation grids was 101 x 61 = 6161. The calculation was carried out under the condition of unsteady, starting airflow and the results were examined by the means of color graphics animation. There were several very large scale eddies in the incubator free space, and their global structure did not show strong changes once they were established. Although the global structure did not change, small scale eddies were shown to be produced around the air inlet and convected down through the free space of the incubator. From these results, we believe that assuming steady and uniform flow in the incubator may not always be relevant when considering heat loss of a baby in an incubator. The steady and uniform flow has been previously assumed either implicitly or explicitly by most of the authors.

  18. Simple SPION Incubation as an Efficient Intracellular Labeling Method for Tracking Neural Progenitor Cells Using MRI

    PubMed Central

    D. M., Jayaseema; Lai, Jiann-Shiun; Hueng, Dueng-Yuan; Chang, Chen

    2013-01-01

    Cellular magnetic resonance imaging (MRI) has been well-established for tracking neural progenitor cells (NPC). Superparamagnetic iron oxide nanoparticles (SPIONs) approved for clinical application are the most common agents used for labeling. Conventionally, transfection agents (TAs) were added with SPIONs to facilitate cell labeling because SPIONs in the native unmodified form were deemed inefficient for intracellular labeling. However, compelling evidence also shows that simple SPION incubation is not invariably ineffective. The labeling efficiency can be improved by prolonged incubation and elevated iron doses. The goal of the present study was to establish simple SPION incubation as an efficient intracellular labeling method. To this end, NPCs derived from the neonatal subventricular zone were incubated with SPIONs (Feridex®) and then evaluated in vitro with regard to the labeling efficiency and biological functions. The results showed that, following 48 hours of incubation at 75 µg/ml, nearly all NPCs exhibited visible SPION intake. Evidence from light microscopy, electron microscopy, chemical analysis, and magnetic resonance imaging confirmed the effectiveness of the labeling. Additionally, biological assays showed that the labeled NPCs exhibited unaffected viability, oxidative stress, apoptosis and differentiation. In the demonstrated in vivo cellular MRI experiment, the hypointensities representing the SPION labeled NPCs remained observable throughout the entire tracking period. The findings indicate that simple SPION incubation without the addition of TAs is an efficient intracellular magnetic labeling method. This simple approach may be considered as an alternative approach to the mainstream labeling method that involves the use of TAs. PMID:23468856

  19. Simple SPION incubation as an efficient intracellular labeling method for tracking neural progenitor cells using MRI.

    PubMed

    Chen, Chiao-Chi V; Ku, Min-Chi; D M, Jayaseema; Lai, Jiann-Shiun; Hueng, Dueng-Yuan; Chang, Chen

    2013-01-01

    Cellular magnetic resonance imaging (MRI) has been well-established for tracking neural progenitor cells (NPC). Superparamagnetic iron oxide nanoparticles (SPIONs) approved for clinical application are the most common agents used for labeling. Conventionally, transfection agents (TAs) were added with SPIONs to facilitate cell labeling because SPIONs in the native unmodified form were deemed inefficient for intracellular labeling. However, compelling evidence also shows that simple SPION incubation is not invariably ineffective. The labeling efficiency can be improved by prolonged incubation and elevated iron doses. The goal of the present study was to establish simple SPION incubation as an efficient intracellular labeling method. To this end, NPCs derived from the neonatal subventricular zone were incubated with SPIONs (Feridex®) and then evaluated in vitro with regard to the labeling efficiency and biological functions. The results showed that, following 48 hours of incubation at 75 µg/ml, nearly all NPCs exhibited visible SPION intake. Evidence from light microscopy, electron microscopy, chemical analysis, and magnetic resonance imaging confirmed the effectiveness of the labeling. Additionally, biological assays showed that the labeled NPCs exhibited unaffected viability, oxidative stress, apoptosis and differentiation. In the demonstrated in vivo cellular MRI experiment, the hypointensities representing the SPION labeled NPCs remained observable throughout the entire tracking period. The findings indicate that simple SPION incubation without the addition of TAs is an efficient intracellular magnetic labeling method. This simple approach may be considered as an alternative approach to the mainstream labeling method that involves the use of TAs.

  20. Incubation temperature affects the immune function of hatchling soft-shelled turtles, Pelodiscus sinensis.

    PubMed

    Dang, Wei; Zhang, Wen; Du, Wei-Guo

    2015-06-01

    Identifying how developmental temperature affects the immune system is critical for understanding how ectothermic animals defend against pathogens and their fitness in the changing world. However, reptiles have received little attention regarding this issue. We incubated eggs at three ecologically relevant temperatures to determine how incubation temperature affects the immune function of hatchling soft-shelled turtles, Pelodiscus sinensis. When exposed to bacterial infections, hatchlings from 24 °C had lower cumulative mortalities (55%, therefore, higher immunocompetence) than those from 28 °C (85%) or 32 °C (100%). Consistent with higher immunocompetence, hatchlings from low incubation temperature had higher IgM, IgD, and CD3γ expressions than their counterparts from the other two higher incubation temperatures. Conversely, the activity of immunity-related enzymes did not match the among-temperature difference in immune function. Specifically, enzyme activity was higher at intermediate temperatures (alkaline phosphatase) or was not affected by incubation temperature (acid phosphatase, lysozyme). Our study is the first to provide unequivocal evidence (at the molecular and organismal level) about the significant effect of incubation temperature on offspring immunity in reptiles. Our results also indicate that the reduced immunity induced by high developmental temperatures might increase the vulnerability of reptiles to the outbreak of diseases under global warming scenarios.

  1. Remote monitoring of parental incubation conditions in the greater sandhill crane

    USGS Publications Warehouse

    Gee, G.F.; Hatfield, J.; Howey, P.J.

    1995-01-01

    To monitor incubation conditions in nests of greater sandhill cranes, a radiotransmitting egg was built using six temperature sensors, a position sensor, and a light sensor. Sensor readings were received, along with time of observations, and stored in a computer. The egg was used to monitor incubation in nests of six pairs of cranes during 1987 and 1988. Ambient temperature was also measured. Analysis of covariance (ANCOVA) was used to relate highest egg temperature, core egg temperature, and lowest egg temperature to ambient temperature, time since the egg was last turned, and time since the beginning of incubation. Ambient temperature had the greatest effect on egg temperature (P 0.0001), followed by the time since the beginning of incubation and time since the egg was last turned. Pair effect, the class variable in the ANCOVA. was also very significant (P < 0.0001). A nine-term Fourier series was used to estimate the average core egg temperature versus time of day and was found to fit the data well (r2 = 0.94). The Fourier series will be used to run a mechanical incubator to simulate natural incubation conditions for cranes.

  2. [Nutrients regeneration speed of sediment in harmful algae blooms (HAB) area of East China Sea].

    PubMed

    Qi, Xiao-hong; Liu, Sumei; Zhang, Jing; Chen, Hongtao

    2003-07-01

    The fluxes of dissolved nutrients at sediment-water interface were investigated at 4 stations in the HAB area of East China Sea in May 2001 and May 2002. The benthic fluxes of nutrients were determined by incubating the sediment core samples with bottom seawater bubbled with air or nitrogen. The transfer of nutrients was more active under anoxic condition. The fluxes of dissolved nutrients were generally high at the stations close to the coast. The sediment was the source of SiO3(2-), which accounted for 6% of primary production. For DIN and PO4(3-), the sediment was the sink. DIN and PO4(3-) adsorbed by sediment accounted for 5.9% and 67% of the riverine DIN and PO4(3-) inputs, respectively, and the inputs of SiO3(2-) accounted for 7.8%.

  3. High rates of denitrification and nitrate removal in cold seep sediments

    PubMed Central

    Bowles, Marshall; Joye, Samantha

    2011-01-01

    We measured denitrification and nitrate removal rates in cold seep sediments from the Gulf of Mexico. Heterotrophic potential denitrification rates were assayed in time-series incubations. Surficial sediments inhabited by Beggiatoa exhibited higher heterotrophic potential denitrification rates (32 μ N reduced day−1) than did deeper sediments (11 μ N reduced day−1). Nitrate removal rates were high in both sediment horizons. These nitrate removal rates translate into rapid turnover times (<1 day) for the nitrate pool, resulting in a faster turnover for the nitrate pool than for the sulfate pool. Together, these data underscore the rigorous nature of internal nitrogen cycling at cold seeps and the requirement for novel mechanisms to provide nitrate to the sediment microbial community. PMID:20944683

  4. High rates of denitrification and nitrate removal in cold seep sediments.

    PubMed

    Bowles, Marshall; Joye, Samantha

    2011-03-01

    We measured denitrification and nitrate removal rates in cold seep sediments from the Gulf of Mexico. Heterotrophic potential denitrification rates were assayed in time-series incubations. Surficial sediments inhabited by Beggiatoa exhibited higher heterotrophic potential denitrification rates (32 μM N reduced day(-1)) than did deeper sediments (11 μM N reduced day(-1)). Nitrate removal rates were high in both sediment horizons. These nitrate removal rates translate into rapid turnover times (<1 day) for the nitrate pool, resulting in a faster turnover for the nitrate pool than for the sulfate pool. Together, these data underscore the rigorous nature of internal nitrogen cycling at cold seeps and the requirement for novel mechanisms to provide nitrate to the sediment microbial community.

  5. Identifying sediment sources in the sediment TMDL process

    USGS Publications Warehouse

    Gellis, Allen C.; Fitzpatrick, Faith A.; Schubauer-Berigan, Joseph P.; Landy, R.B.; Gorman Sanisaca, Lillian E.

    2015-01-01

    Sediment is an important pollutant contributing to aquatic-habitat degradation in many waterways of the United States. This paper discusses the application of sediment budgets in conjunction with sediment fingerprinting as tools to determine the sources of sediment in impaired waterways. These approaches complement monitoring, assessment, and modeling of sediment erosion, transport, and storage in watersheds. Combining the sediment fingerprinting and sediment budget approaches can help determine specific adaptive management plans and techniques applied to targeting hot spots or areas of high erosion.

  6. Use of Novel Whole Core Incubations to Measure the Fate of Fertilizer N in a Flooded Agricultural System

    NASA Astrophysics Data System (ADS)

    Penton, C. R.; Bruland, G. L.; Popp, B. N.; Engstrom, P.; Tiedje, J.; Brown, G. A.; Deenik, J. L.

    2010-12-01

    We developed a new whole-core perfusion technique for tracking the fate of 15NH4+ added to intact vegetated cores. Taro plants (Colocasia esculenta) were field-grown in (20 cm diameter) cores for three months, which allowed exchange with natural porewater, then harvested. Following core extraction, surface and porewater were removed and 15NH4+ labeled porewater was slowly re-introduced to the core through a perfusion cap in the laboratory. Mini porewater equilibrators were placed in 1 cm increments through the sediment profile for porewater extraction during incubation. We also independently tested the ability of taro roots to oxygenate the subsurface by growing plants in nutrient agar and measuring O2 flux with a microelectrode. In the agar experiment, diurnal O2 transport was monitored and the application of wind across the taro leaves was found necessary to develop an oxygenated zone at the root tips. Using this information, the harvested taro were incubated in growth chambers after perfusion using three treatments: Vegetated without wind, vegetated with wind, and a non-vegetated control. Porewater was analyzed for 29+30N2, 15NH4+, 15NO3-, and unlabeled nitrate and ammonium species. Plant uptake of 15NH4+ was also determined. Quantitative PCR was performed on the sediment profiles of functional genes involved in nitrogen cycling for correlation to N transformations. The major pathway of N loss was root-mediated nitrification/denitrification followed by a flow of 29+30N2 through the aerenchyma. The vegetated wind treatment exhibited the highest concentrations of labeled N2 in the subsurface during all time periods. In contrast, the vegetated no wind treatment had much higher aerenchyma 29+30N2 concentration, accounting for ~100% of the subsurface N2 accumulation by day three of the incubation. Surface water N2 concentrations were also highest in the no wind treatment. After nine days the 29+30N2 concentrations dropped by ~70%, with little difference remaining

  7. Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

    PubMed

    Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

    2016-08-01

    Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single-cell genomics, metagenomics and transcriptomics with (14)C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70-86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490-cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with (14)C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter, JTB255 and SSr clades) that made up >50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drives important parts of marine carbon and sulfur cycles.

  8. Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments

    PubMed Central

    Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M.; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

    2015-01-01

    Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single cell genomics, metagenomics and -transcriptomics with 14C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70 to 86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490 cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with 14C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter-, JTB255- and SSr-clades) that made up more than 50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drive important parts of marine carbon and sulfur cycles. PMID:26872043

  9. Metatranscriptomic insights into polyphosphate metabolism in marine sediments

    PubMed Central

    Jones, Daniel S; Flood, Beverly E; Bailey, Jake V

    2016-01-01

    Microorganisms can influence inorganic phosphate (Pi) in pore waters, and thus the saturation state of phosphatic minerals, by accumulating and hydrolyzing intracellular polyphosphate (poly-P). Here we used comparative metatranscriptomics to explore microbial poly-P utilization in marine sediments. Sulfidic marine sediments from methane seeps near Barbados and from the Santa Barbara Basin (SBB) oxygen minimum zone were incubated under oxic and anoxic sulfidic conditions. Pi was sequestered under oxic conditions and liberated under anoxic conditions. Transcripts homologous to poly-P kinase type 2 (ppk2) were 6–22 × more abundant in metatranscriptomes from the anoxic incubations, suggesting that reversible poly-P degradation by Ppk2 may be an important metabolic response to anoxia by marine microorganisms. Overall, diverse taxa differentially expressed homologues of genes for poly-P degradation (ppk2 and exopolyphosphatase) under different incubation conditions. Sulfur-oxidizing microorganisms appeared to preferentially express genes for poly-P degradation under anoxic conditions, which may impact phosphorus cycling in a wide range of oxygen-depleted marine settings. PMID:26381585

  10. The anaerobic degradation of organic matter in Danish coastal sediments - Iron reduction, manganese reduction, and sulfate reduction

    NASA Technical Reports Server (NTRS)

    Canfield, Donald E.; Thamdrup, BO; Hansen, Jens W.

    1993-01-01

    A combination of porewater and solid phase analysis as well as a series of sediment incubations are used to quantify organic carbon oxidation by dissimilatory Fe reduction, Mn reduction, and sulfate reduction, in sediments from the Skagerrak (located off the northeast coast of Jutland, Denmark). Solid phase data are integrated with incubation results to define the zones of the various oxidation processes. At S(9), surface Mn enrichments of up to 3.5 wt pct were found, and with such a ready source of Mn, dissimilatory Mn reduction was the only significant anaerobic process of carbon oxidation in the surface 10 cm of the sediment. At S(4) and S(6), active Mn reduction occurred; however, most of the Mn reduction may have resulted from the oxidation of acid volatile sulfides and Fe(2+) rather than by a dissimilatory sulfate. Dissolved Mn(2+) was found to completely adsorb onto sediment containing fully oxidized Mn oxides.

  11. Indicators: Sediment Mercury

    EPA Pesticide Factsheets

    Sediment mercury is mercury that has become embedded into the bottom substrates of aquatic ecosystems. Mercury is a common pollutant of aquatic ecosystems and it can have a substantial impact on both human and wildlife health.

  12. SEDIMENT GEOCHEMICAL MODEL

    EPA Science Inventory

    Until recently, sediment geochemical models (diagenetic models) have been only able to explain sedimentary flux and concentration profiles for a few simplified geochemical cycles (e.g., nitrogen, carbon and sulfur). However with advances in numerical methods, increased accuracy ...

  13. Site 765: Sediment Lithostratigraphy

    USGS Publications Warehouse

    ,

    1990-01-01

    A 935-m-thick succession of Quaternary through Lower Cretaceous sediments was recovered at Site 765 (Fig. 10). A single core of Quaternary sediment was obtained from Hole 765A; drilling terminated and a new hole was drilled in an attempt to establish the mud line. Quaternary through middle Miocene sediments were cored in Hole 765B down to a depth of 395.6 mbsf. Middle Miocene through Lower Cretaceous sediments were cored in Hole 765C, after washing the interval between 0 and 350.2 mbsf. Exact lithologic correlation of the basal cores from Hole 765B with the upper cores from Hole 765C is not possible because of poor recovery; hence, correlation is based solely on matching sub-bottom depths.

  14. SEDIMENT GEOCHEMICAL MODEL

    EPA Science Inventory

    Until recently, sediment geochemical models (diagenetic models) have been only able to explain sedimentary flux and concentration profiles for a few simplified geochemical cycles (e.g., nitrogen, carbon and sulfur). However with advances in numerical methods, increased accuracy ...

  15. Indicators: Streambed Sediments

    EPA Pesticide Factsheets

    Streambed sediments are fine mineral deposits and silt located on the streambed. In excess amounts, they can fill in the habitat spaces between stream cobbles and rocks where aquatic organisms live and breed.

  16. The role of sediment structure in gas bubble storage and release

    NASA Astrophysics Data System (ADS)

    Liu, L.; Wilkinson, J.; Koca, K.; Buchmann, C.; Lorke, A.

    2016-07-01

    Ebullition is an important pathway for methane emission from inland waters. However, the mechanisms controlling methane bubble formation and release in aquatic sediments remain unclear. A laboratory incubation experiment was conducted to investigate the dynamics of methane bubble formation, storage, and release in response to hydrostatic head drops in three different types of natural sediment. Homogenized clayey, silty, and sandy sediments (initially quasi-uniform through the depth of the columns) were incubated in chambers for 3 weeks. We observed three distinct stages of methane bubble formation and release: stage I—microbubble formation-displacing mobile water from sediment pores with negligible ebullition; stage II—formation of large bubbles, displacing the surrounding sediment with concurrent increase in ebullition; and stage III—formation of conduits with relatively steady ebullition. The maximum depth-averaged volumetric gas content at steady state varied from 18.8% in clayey to 12.0% in silty and 13.2% in sandy sediment. Gas storage in the sediment columns showed strong vertical stratification: most of the free gas was stored in an upper layer, whose thickness varied with sediment grain size. The magnitude of individual ebullition episodes was linearly correlated to hydrostatic head drop and decreased from clayey to sandy to silty sediment and was in excess of that estimated from gas expansion alone, indicating the release of pore water methane. These findings combined with a hydrodynamic model capable of determining dominant sediment type and depositional zones could help resolve spatial heterogeneities in methane ebullition at medium to larger scales in inland waters.

  17. Efficacy of ultra short sub-30 minute incubation of 5-aminolevulinic acid photodynamic therapy in vitro.

    PubMed

    Koo, Eugene; Austin, Evan; Mamalis, Andrew; Jagdeo, Jared

    2017-08-01

    The estimated incidence of cutaneous squamous cell carcinoma (SCC) is 700,000 cases per year. In the US, SCC incidence is highest among fair skinned adults older than 50 years of age. Thus, as the population ages, the reported number of SCCs will likely increase in the future. Photodynamic therapy (PDT) is an FDA approved therapy for treatment of actinic keratoses (AKs), a precursor to cutaneous SCC lesions. The FDA approved incubation time of the photosensitizing agent 5-aminolevulinic acid (ALA) is 14-18 hours. Recent studies have investigated short ALA incubation times of 1-3 hours with ALA and PDT demonstrating treatment success. Therefore, the question exists whether ALA incubation periods of less than 30 minutes are efficacious. Herein, we evaluate the efficacy of short ALA incubation periods by measuring apoptosis after 10, 15, and 20 minutes of ALA incubation. AG13145 normal human dermal fibroblasts HDFs were incubated with 10, 15, or 20 minute of ALA at various concentrations (0, 0.05, 0.075, 0.1, 0.25, 0.375, 0.5, 1, and 2 mM). After ALA incubation, samples were treated with 1,000 seconds (16 minutes 40 seconds) of Blu-U fluorescent blue light (417 ± 5 nm) for a fluence of 10 J/cm(2) . Immediately following treatment with blue light, samples were collected and stained for apoptosis and necrosis with annexin-V and 7-aminoactinomycin D (7-AAD), and then analyzed by flow cytometry. HDFs incubated with ALA for 10 minute at 36 °C followed by 10 J/cm(2) of blue light had no statistically significant changes in apoptosis. HDFs incubated with ALA for 15 or 20 minutes at 36 °C followed by 10 J/cm(2) of blue light had statistically significant increases in the percentages of cells positive for apoptosis in the 0.5, 1.0, and 2.0 mM ALA doses (P < 0.05). We found that incubation of ALA for at least 15 minutes followed by 10 J/cm(2) of blue light resulted in a statistically significant increase in apoptosis. Lasers Surg. Med. 49

  18. Role of Dorsomedial Striatum Neuronal Ensembles in Incubation of Methamphetamine Craving after Voluntary Abstinence.

    PubMed

    Caprioli, Daniele; Venniro, Marco; Zhang, Michelle; Bossert, Jennifer M; Warren, Brandon L; Hope, Bruce T; Shaham, Yavin

    2017-01-25

    We recently developed a rat model of incubation of methamphetamine craving after choice-based voluntary abstinence. Here, we studied the role of dorsolateral striatum (DLS) and dorsomedial striatum (DMS) in this incubation. We trained rats to self-administer palatable food pellets (6 d, 6 h/d) and methamphetamine (12 d, 6 h/d). We then assessed relapse to methamphetamine seeking under extinction conditions after 1 and 21 abstinence days. Between tests, the rats underwent voluntary abstinence (using a discrete choice procedure between methamphetamine and food; 20 trials/d) for 19 d. We used in situ hybridization to measure the colabeling of the activ