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Sample records for indeksatsiya baz dannykh

  1. Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B

    PubMed Central

    2015-01-01

    Bromodomains are acetyl-lysine specific protein interaction domains that have recently emerged as a new target class for the development of inhibitors that modulate gene transcription. The two closely related bromodomain containing proteins BAZ2A and BAZ2B constitute the central scaffolding protein of the nucleolar remodeling complex (NoRC) that regulates the expression of noncoding RNAs. However, BAZ2 bromodomains have low predicted druggability and so far no selective inhibitors have been published. Here we report the development of GSK2801, a potent, selective and cell active acetyl-lysine competitive inhibitor of BAZ2A and BAZ2B bromodomains as well as the inactive control compound GSK8573. GSK2801 binds to BAZ2 bromodomains with dissociation constants (KD) of 136 and 257 nM for BAZ2B and BAZ2A, respectively. Crystal structures demonstrated a canonical acetyl-lysine competitive binding mode. Cellular activity was demonstrated using fluorescent recovery after photobleaching (FRAP) monitoring displacement of GFP-BAZ2A from acetylated chromatin. A pharmacokinetic study in mice showed that GSK2801 had reasonable in vivo exposure after oral dosing, with modest clearance and reasonable plasma stability. Thus, GSK2801 represents a versatile tool compound for cellular and in vivo studies to understand the role of BAZ2 bromodomains in chromatin biology. PMID:25799074

  2. Boltzmann-Arrhenius (baz) Model in Physics-Of Problems

    NASA Astrophysics Data System (ADS)

    Suhir, E.; Kang, S.-M.

    2013-05-01

    Boltzmann-Arrhenius-Zhurkov (BAZ) model enables one to obtain a simple, easy-to-use and physically meaningful formula for the evaluation of the probability of failure (PoF) of a material after the given time in operation at the given temperature and under the given stress (not necessarily mechanical). It is shown that the material degradation (aging, damage accumulation, flaw propagation, etc.) can be viewed, when BAZ model is considered, as a Markovian process, and that the BAZ model can be obtained as the steady-state solution to the Fokker-Planck equation in the theory of Markovian processes. It is shown also that the BAZ model addresses the worst and a reasonably conservative situation, when the highest PoF is expected. It is suggested therefore that the transient period preceding the condition addressed by the steady-state BAZ model need not be accounted for in engineering evaluations. However, when there is an interest in understanding the physics of the transient degradation process, the obtained solution to the Fokker-Planck equation can be used for this purpose.

  3. Baz, the Bard and Borrowing: "Romeo and Juliet" on Film.

    ERIC Educational Resources Information Center

    Allen, Rhonda; Guest, Peter

    1999-01-01

    Outlines a unit of study of Baz Luhrmann's 1997 film version of "Romeo and Juliet" for Year 10 students in Australia. Includes a series of lessons/questions and activities that include directing students (1) to consider speed and editing and character analysis; (2) to engage in language comparison; and (3) to generate extended responses. (NH)

  4. BAZ1B in Nucleus Accumbens Regulates Reward-Related Behaviors in Response to Distinct Emotional Stimuli

    PubMed Central

    Sun, HaoSheng; Martin, Jennifer A.; Werner, Craig T.; Wang, Zi-Jun; Damez-Werno, Diane M.; Scobie, Kimberly N.; Shao, Ning-Yi; Dias, Caroline; Rabkin, Jacqui; Koo, Ja Wook; Gancarz, Amy M.; Mouzon, Ezekiell A.; Neve, Rachael L.; Shen, Li; Dietz, David M.

    2016-01-01

    ATP-dependent chromatin remodeling proteins are being implicated increasingly in the regulation of complex behaviors, including models of several psychiatric disorders. Here, we demonstrate that Baz1b, an accessory subunit of the ISWI family of chromatin remodeling complexes, is upregulated in the nucleus accumbens (NAc), a key brain reward region, in both chronic cocaine-treated mice and mice that are resilient to chronic social defeat stress. In contrast, no regulation is seen in mice that are susceptible to this chronic stress. Viral-mediated overexpression of Baz1b, along with its associated subunit Smarca5, in mouse NAc is sufficient to potentiate both rewarding responses to cocaine, including cocaine self-administration, and resilience to chronic social defeat stress. However, despite these similar, proreward behavioral effects, genome-wide mapping of BAZ1B in NAc revealed mostly distinct subsets of genes regulated by these chromatin remodeling proteins after chronic exposure to either cocaine or social stress. Together, these findings suggest important roles for BAZ1B and its associated chromatin remodeling complexes in NAc in the regulation of reward behaviors to distinct emotional stimuli and highlight the stimulus-specific nature of the actions of these regulatory proteins. SIGNIFICANCE STATEMENT We show that BAZ1B, a component of chromatin remodeling complexes, in the nucleus accumbens regulates reward-related behaviors in response to chronic exposure to both rewarding and aversive stimuli by regulating largely distinct subsets of genes. PMID:27053203

  5. Mouse BAZ1A (ACF1) Is Dispensable for Double-Strand Break Repair but Is Essential for Averting Improper Gene Expression during Spermatogenesis

    PubMed Central

    Dowdle, James A.; Mehta, Monika; Kass, Elizabeth M.; Vuong, Bao Q.; Inagaki, Akiko; Egli, Dieter; Jasin, Maria; Keeney, Scott

    2013-01-01

    ATP-dependent chromatin remodelers control DNA access for transcription, recombination, and other processes. Acf1 (also known as BAZ1A in mammals) is a defining subunit of the conserved ISWI-family chromatin remodelers ACF and CHRAC, first purified over 15 years ago from Drosophila melanogaster embryos. Much is known about biochemical properties of ACF and CHRAC, which move nucleosomes in vitro and in vivo to establish ordered chromatin arrays. Genetic studies in yeast, flies and cultured human cells clearly implicate these complexes in transcriptional repression via control of chromatin structures. RNAi experiments in transformed mammalian cells in culture also implicate ACF and CHRAC in DNA damage checkpoints and double-strand break repair. However, their essential in vivo roles in mammals are unknown. Here, we show that Baz1a-knockout mice are viable and able to repair developmentally programmed DNA double-strand breaks in the immune system and germ line, I-SceI endonuclease-induced breaks in primary fibroblasts via homologous recombination, and DNA damage from mitomycin C exposure in vivo. However, Baz1a deficiency causes male-specific sterility in accord with its high expression in male germ cells, where it displays dynamic, stage-specific patterns of chromosomal localization. Sterility is caused by pronounced defects in sperm development, most likely a consequence of massively perturbed gene expression in spermatocytes and round spermatids in the absence of BAZ1A: the normal spermiogenic transcription program is largely intact but more than 900 other genes are mis-regulated, primarily reflecting inappropriate up-regulation. We propose that large-scale changes in chromatin composition that occur during spermatogenesis create a window of vulnerability to promiscuous transcription changes, with an essential function of ACF and/or CHRAC chromatin remodeling activities being to safeguard against these alterations. PMID:24244200

  6. The PCP pathway regulates Baz planar distribution in epithelial cells.

    PubMed

    Aigouy, Benoit; Le Bivic, André

    2016-01-01

    The localisation of apico-basal polarity proteins along the Z-axis of epithelial cells is well understood while their distribution in the plane of the epithelium is poorly characterised. Here we provide a systematic description of the planar localisation of apico-basal polarity proteins in the Drosophila ommatidial epithelium. We show that the adherens junction proteins Shotgun and Armadillo, as well as the baso-lateral complexes, are bilateral, i.e. present on both sides of cell interfaces. In contrast, we report that other key adherens junction proteins, Bazooka and the myosin regulatory light chain (Spaghetti squash) are unilateral, i.e. present on one side of cell interfaces. Furthermore, we demonstrate that planar cell polarity (PCP) and not the apical determinants Crumbs and Par-6 control Bazooka unilaterality in cone cells. Altogether, our work unravels an unexpected organisation and combination of apico-basal, cytoskeletal and planar polarity proteins that is different on either side of cell-cell interfaces and unique for the different contacts of the same cell. PMID:27624969

  7. The PCP pathway regulates Baz planar distribution in epithelial cells

    PubMed Central

    Aigouy, Benoit; Le Bivic, André

    2016-01-01

    The localisation of apico-basal polarity proteins along the Z-axis of epithelial cells is well understood while their distribution in the plane of the epithelium is poorly characterised. Here we provide a systematic description of the planar localisation of apico-basal polarity proteins in the Drosophila ommatidial epithelium. We show that the adherens junction proteins Shotgun and Armadillo, as well as the baso-lateral complexes, are bilateral, i.e. present on both sides of cell interfaces. In contrast, we report that other key adherens junction proteins, Bazooka and the myosin regulatory light chain (Spaghetti squash) are unilateral, i.e. present on one side of cell interfaces. Furthermore, we demonstrate that planar cell polarity (PCP) and not the apical determinants Crumbs and Par-6 control Bazooka unilaterality in cone cells. Altogether, our work unravels an unexpected organisation and combination of apico-basal, cytoskeletal and planar polarity proteins that is different on either side of cell-cell interfaces and unique for the different contacts of the same cell. PMID:27624969

  8. Claire Danes's Star-Body, Teen Female Viewers and the Pluralisation of Authorship in Baz Luhrmann's "William Shakespeare's Romeo + Juliet"

    ERIC Educational Resources Information Center

    Keam, Angela

    2008-01-01

    Teaching William Shakespeare's canonical tragedy "Romeo and Juliet" to teenagers in the context of the English classroom in Australia is not a particularly new pedagogical practice. In the year 2008, when many teachers (particularly those with a feminist bent such as I) are intent on guiding their students to decipher the ideological motivations…

  9. Aspects of the integration of 3D buildings models with database. (Polish Title: Aspekty integracji modeli 3D budynków z bazą danych opisowych)

    NASA Astrophysics Data System (ADS)

    Kraszewski, B.

    2013-12-01

    In recent years in Poland for many cities 3D models were created. These developments mainly building models which contain only geometric information were included. However, it is advisable to extend the functionality and spectrum of applications of these models by adding to them information from existing databases. In this article the integration of 3D building models with databases were presented. Two methods of connection of both sets of data were analyzed. First was based on independent connection CAD model with database file and the second was integrated both types of data in CityGML structure. The capabilities of both methods on example 3D data were examined. The 3D data interior and exterior part of building were included. Based on analyzes it was found that the first connection methods used ODBC interface was more friendly for user, because integration could be done in CAD software usually used to 3D models creation. This method to connection used unique identifier MSLINK definited for all database records. The structure of connected database allowed to connect together individual attribute to set of date (tables) collected in different department of institution. The CityGML standard allowed saving not only descriptive information, but also describe semantic and topology of the objects. This format on creation stage request from user a knowledge about specific recording structure based on XML code. In CityGML standard default attributes for individual spatial objects were defined. The values for this attributes in specific code list were determined. In both presented methods it was allowed to add user attributes

  10. Bazooka/PAR3 is dispensable for polarity in Drosophila follicular epithelial cells.

    PubMed

    Shahab, Jaffer; Tiwari, Manu D; Honemann-Capito, Mona; Krahn, Michael P; Wodarz, Andreas

    2015-03-13

    Apico-basal polarity is the defining characteristic of epithelial cells. In Drosophila, apical membrane identity is established and regulated through interactions between the highly conserved Par complex (Bazooka/Par3, atypical protein kinase C and Par6), and the Crumbs complex (Crumbs, Stardust and PATJ). It has been proposed that Bazooka operates at the top of a genetic hierarchy in the establishment and maintenance of apico-basal polarity. However, there is still ambiguity over the correct sequence of events and cross-talk with other pathways during this process. In this study, we reassess this issue by comparing the phenotypes of the commonly used baz(4) and baz(815-8) alleles with those of the so far uncharacterized baz(XR11) and baz(EH747) null alleles in different Drosophila epithelia. While all these baz alleles display identical phenotypes during embryonic epithelial development, we observe strong discrepancies in the severity and penetrance of polarity defects in the follicular epithelium: polarity is mostly normal in baz(EH747) and baz(XR11) while baz(4) and baz(815) (-8) show loss of polarity, severe multilayering and loss of epithelial integrity throughout the clones. Further analysis reveals that the chromosomes carrying the baz(4) and baz(815-8) alleles may contain additional mutations that enhance the true baz loss-of-function phenotype in the follicular epithelium. This study clearly shows that Baz is dispensable for the regulation of polarity in the follicular epithelium, and that the requirement for key regulators of cell polarity is highly dependent on developmental context and cell type.

  11. Bazooka/PAR3 is dispensable for polarity in Drosophila follicular epithelial cells

    PubMed Central

    Shahab, Jaffer; Tiwari, Manu D.; Honemann-Capito, Mona; Krahn, Michael P.; Wodarz, Andreas

    2015-01-01

    Apico-basal polarity is the defining characteristic of epithelial cells. In Drosophila, apical membrane identity is established and regulated through interactions between the highly conserved Par complex (Bazooka/Par3, atypical protein kinase C and Par6), and the Crumbs complex (Crumbs, Stardust and PATJ). It has been proposed that Bazooka operates at the top of a genetic hierarchy in the establishment and maintenance of apico-basal polarity. However, there is still ambiguity over the correct sequence of events and cross-talk with other pathways during this process. In this study, we reassess this issue by comparing the phenotypes of the commonly used baz4 and baz815-8 alleles with those of the so far uncharacterized bazXR11 and bazEH747 null alleles in different Drosophila epithelia. While all these baz alleles display identical phenotypes during embryonic epithelial development, we observe strong discrepancies in the severity and penetrance of polarity defects in the follicular epithelium: polarity is mostly normal in bazEH747 and bazXR11 while baz4 and baz815-8 show loss of polarity, severe multilayering and loss of epithelial integrity throughout the clones. Further analysis reveals that the chromosomes carrying the baz4 and baz815-8 alleles may contain additional mutations that enhance the true baz loss-of-function phenotype in the follicular epithelium. This study clearly shows that Baz is dispensable for the regulation of polarity in the follicular epithelium, and that the requirement for key regulators of cell polarity is highly dependent on developmental context and cell type. PMID:25770183

  12. Formation of a Bazooka-Stardust complex is essential for plasma membrane polarity in epithelia.

    PubMed

    Krahn, Michael P; Bückers, Johanna; Kastrup, Lars; Wodarz, Andreas

    2010-09-01

    Apical-basal polarity in Drosophila melanogaster epithelia depends on several evolutionarily conserved proteins that have been assigned to two distinct protein complexes: the Bazooka (Baz)-PAR-6 (partitioning defective 6)-atypical protein kinase C (aPKC) complex and the Crumbs (Crb)-Stardust (Sdt) complex. These proteins operate in a functional hierarchy, in which Baz is required for the proper subcellular localization of all other proteins. We investigated how these proteins interact and how this interaction is regulated. We show that Baz recruits Sdt to the plasma membrane by direct interaction between the Postsynaptic density 95/Discs large/Zonula occludens 1 (PDZ) domain of Sdt and a region of Baz that contains a phosphorylation site for aPKC. Phosphorylation of Baz causes the dissociation of the Baz-Sdt complex. Overexpression of a nonphosphorylatable version of Baz blocks the dissociation of Sdt from Baz, causing phenotypes very similar to those of crb and sdt mutations. Our findings provide a molecular mechanism for the phosphorylation-dependent interaction between the Baz-PAR-3 and Crb complexes during the establishment of epithelial polarity.

  13. aPKC Phosphorylation of Bazooka Defines the Apical/Lateral Border in Drosophila Epithelial Cells

    PubMed Central

    Morais-de-Sá, Eurico; Mirouse, Vincent; St Johnston, Daniel

    2010-01-01

    Summary Bazooka (PAR-3), PAR-6, and aPKC form a complex that plays a key role in the polarization of many cell types. In epithelial cells, however, Bazooka localizes below PAR-6 and aPKC at the apical/lateral junction. Here, we show that Baz is excluded from the apical aPKC domain in epithelia by aPKC phosphorylation, which disrupts the Baz/aPKC interaction. Removal of Baz from the complex is epithelial-specific because it also requires the Crumbs complex, which prevents the Baz/PAR-6 interaction. In the absence of Crumbs or aPKC phosphorylation of Baz, mislocalized Baz recruits adherens junction components apically, leading to a loss of the apical domain and an expansion of lateral. Thus, apical exclusion of Baz by Crumbs and aPKC defines the apical/lateral border. Although Baz acts as an aPKC targeting and specificity factor in nonepithelial cells, our results reveal that it performs a complementary function in positioning the adherens junction in epithelia. PMID:20434988

  14. Nascent DNA Proteomics Reveals a Chromatin Remodeler Required for Topoisomerase I Loading at Replication Forks.

    PubMed

    Ribeyre, Cyril; Zellweger, Ralph; Chauvin, Maeva; Bec, Nicole; Larroque, Christian; Lopes, Massimo; Constantinou, Angelos

    2016-04-12

    During transcription and DNA replication, the DNA template is overwound ahead of RNA and DNA polymerases and relaxed by DNA topoisomerases. Inhibitors of topoisomerases are potent anti-cancer agents. Camptothecin traps topoisomerase I on DNA and exerts preferential cytotoxicity toward cancer cells by way of its interference with the progression of replication forks. Starting with an unbiased proteomic analysis, we find that the chromatin remodeling complex BAZ1B-SMARCA5 accumulates near replication forks in camptothecin-exposed cells. We report that BAZ1B associates with topoisomerase I and facilitates its access to replication forks. Single-molecule analyses of replication structures show that BAZ1B contributes to replication interference by camptothecin. A lack of BAZ1B confers increased cellular tolerance of camptothecin. These findings reveal BAZ1B as a key facilitator of topoisomerase I function during DNA replication that affects the response of cancer cells to topoisomerase I inhibitors.

  15. The Effect of Breakfast Type on Total Daily Energy Intake and Body Mass Index Among Thai School Children.

    PubMed

    Purttiponthanee, Sasiumphai; Rojroongwasinkul, Nipa; Wimonpeerapattana, Wanphen; Thasanasuwan, Wiyada; Senaprom, Sayamon; Khouw, Ilse; Deurenberg, Paul

    2016-07-01

    The study investigated the association between breakfast types consumed, daily energy intake, and body mass index for age Z-score (BAZ). Cross-sectional data from 1258 children aged 7 to 12.9 years were analyzed for breakfast type, nutrient intakes, BAZ, and proportion of overweight or obesity. Analysis of covariance was used to compare energy and nutrient intakes, BAZ, and proportion of overweight/obese children between breakfast groups. Only 19% of children had adequate energy intake from breakfast. Those consuming snacks had a significantly lower BAZ (Z = -0.73), with 5% of them being overweight/obese. Those consuming beverages and desserts had the lowest total daily energy intake (1314 kcal) and lowest protein intake (8.4 g). The results suggest that breakfast type is associated with daily energy intake and BAZ. Most breakfasts are not adequate. School-based nutrition education programs involving families, teachers, and health professionals can contribute to improve this situation. PMID:27183975

  16. Subsurface biological activity zone detection using genetic search algorithms

    SciTech Connect

    Mahinthakumar, G.; Gwo, J.P.; Moline, G.R.; Webb, O.F.

    1999-12-01

    Use of generic search algorithms for detection of subsurface biological activity zones (BAZ) is investigated through a series of hypothetical numerical biostimulation experiments. Continuous injection of dissolved oxygen and methane with periodically varying concentration stimulates the cometabolism of indigenous methanotropic bacteria. The observed breakthroughs of methane are used to deduce possible BAZ in the subsurface. The numerical experiments are implemented in a parallel computing environment to make possible the large number of simultaneous transport simulations required by the algorithm. The results show that genetic algorithms are very efficient in locating multiple activity zones, provided the observed signals adequately sample the BAZ.

  17. aPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization.

    PubMed

    Soriano, Erika V; Ivanova, Marina E; Fletcher, Georgina; Riou, Philippe; Knowles, Philip P; Barnouin, Karin; Purkiss, Andrew; Kostelecky, Brenda; Saiu, Peter; Linch, Mark; Elbediwy, Ahmed; Kjær, Svend; O'Reilly, Nicola; Snijders, Ambrosius P; Parker, Peter J; Thompson, Barry J; McDonald, Neil Q

    2016-08-22

    Atypical protein kinase C (aPKC) is a key apical-basal polarity determinant and Par complex component. It is recruited by Par3/Baz (Bazooka in Drosophila) into epithelial apical domains through high-affinity interaction. Paradoxically, aPKC also phosphorylates Par3/Baz, provoking its relocalization to adherens junctions (AJs). We show that Par3 conserved region 3 (CR3) forms a tight inhibitory complex with a primed aPKC kinase domain, blocking substrate access. A CR3 motif flanking its PKC consensus site disrupts the aPKC kinase N lobe, separating P-loop/αB/αC contacts. A second CR3 motif provides a high-affinity anchor. Mutation of either motif switches CR3 to an efficient in vitro substrate by exposing its phospho-acceptor site. In vivo, mutation of either CR3 motif alters Par3/Baz localization from apical to AJs. Our results reveal how Par3/Baz CR3 can antagonize aPKC in stable apical Par complexes and suggests that modulation of CR3 inhibitory arms or opposing aPKC pockets would perturb the interaction, promoting Par3/Baz phosphorylation. PMID:27554858

  18. Adaptive capacity of fishing communities at marine protected areas: a case study from the Colombian Pacific.

    PubMed

    Moreno-Sánchez, Rocío del Pilar; Maldonado, Jorge Higinio

    2013-12-01

    Departing from a theoretical methodology, we estimate empirically an index of adaptive capacity (IAC) of a fishing community to the establishment of marine protected areas (MPAs). We carried out household surveys, designed to obtain information for indicators and sub-indicators, and calculated the IAC. Moreover, we performed a sensitivity analysis to check for robustness of the results. Our findings show that, despite being located between two MPAs, the fishing community of Bazán in the Colombian Pacific is highly vulnerable and that the socioeconomic dimension of the IAC constitutes the most binding dimension for building adaptive capacity. Bazán is characterized by extreme poverty, high dependence on resources, and lack of basic public infrastructure. Notwithstanding, social capital and local awareness about ecological conditions may act as enhancers of adaptive capacity. The establishment of MPAs should consider the development of strategies to confer adaptive capacity to local communities highly dependent on resource extraction. PMID:24213997

  19. Seismic detections of the 15 February 2013 Chelyabinsk meteor from the dense ChinArray

    NASA Astrophysics Data System (ADS)

    Li, Lu; Wang, Baoshan; Peng, Zhigang; Wang, Weitao

    2016-07-01

    ChinArray is a dense portable broadband seismic network to cover the entire continental China, and the Phase I is deployed along the north-south seismic belt in southwest China. In this study, we analyze seismic data recorded on the ChinArray following the February 15, 2013 Chelyabinsk (Russia) meteor. This was the largest known object entering the Earth's atmosphere since the 1908 Tunguska meteor. The seismic energy radiated from this event was recorded by seismic stations worldwide including the dense ChinArray that are more than 4000 km away. The weak signal from the meteor event was contaminated by a magnitude 5.8 Tonga earthquake occurred ~20 min earlier. To test the feasibility of detecting the weak seismic signals from the meteor event, we compute vespagram and perform F-K analysis to the surface-wave data. We identify a seismic phase with back azimuth (BAZ) of 329.7° and slowness of 34.73 s/deg, corresponding to the surface wave from the Russian meteor event (BAZ ~325.97°). The surface magnitude (M S) of the meteor event is 3.94 ± 0.18. We also perform similar analysis on the data from the broadband array F-net in Japan, and find the BAZ of the surface waves to be 316.61°. With the different BAZs of ChinArray and F-net, we locate the Russian meteor event at 58.80°N, 58.72°E. The relatively large mislocation (~438 km as compared with 55.15°N, 61.41°E by others) may be a result of the bending propagation path of surface waves, which deviates from the great circle path. Our results suggest that the dense ChinArray and its subarrays could be used to detect weak signals at teleseismic distances.

  20. Seismic detections of the 15 February 2013 Chelyabinsk meteor from the dense ChinArray

    NASA Astrophysics Data System (ADS)

    Li, Lu; Wang, Baoshan; Peng, Zhigang; Wang, Weitao

    2016-08-01

    ChinArray is a dense portable broadband seismic network to cover the entire continental China, and the Phase I is deployed along the north-south seismic belt in southwest China. In this study, we analyze seismic data recorded on the ChinArray following the February 15, 2013 Chelyabinsk (Russia) meteor. This was the largest known object entering the Earth's atmosphere since the 1908 Tunguska meteor. The seismic energy radiated from this event was recorded by seismic stations worldwide including the dense ChinArray that are more than 4000 km away. The weak signal from the meteor event was contaminated by a magnitude 5.8 Tonga earthquake occurred ~20 min earlier. To test the feasibility of detecting the weak seismic signals from the meteor event, we compute vespagram and perform F-K analysis to the surface-wave data. We identify a seismic phase with back azimuth (BAZ) of 329.7° and slowness of 34.73 s/deg, corresponding to the surface wave from the Russian meteor event (BAZ ~325.97°). The surface magnitude ( M S) of the meteor event is 3.94 ± 0.18. We also perform similar analysis on the data from the broadband array F-net in Japan, and find the BAZ of the surface waves to be 316.61°. With the different BAZs of ChinArray and F-net, we locate the Russian meteor event at 58.80°N, 58.72°E. The relatively large mislocation (~438 km as compared with 55.15°N, 61.41°E by others) may be a result of the bending propagation path of surface waves, which deviates from the great circle path. Our results suggest that the dense ChinArray and its subarrays could be used to detect weak signals at teleseismic distances.

  1. Distinct roles of Bazooka and Stardust in the specification of Drosophila photoreceptor membrane architecture.

    PubMed

    Hong, Yang; Ackerman, Larry; Jan, Lily Yeh; Jan, Yuh-Nung

    2003-10-28

    Photoreceptors form during Drosophila pupal development and acquire elaborate membrane structures, including the rhabdomeres and stalk membranes. Here, we show that the development of these cellular structures involves two distinct processes: the establishment of apical-basal polarity that requires Bazooka (Baz), and the regionalization of apical membrane into stalk membranes and rhabdomeres that requires Stardust (Sdt). In the absence of Baz, the apical-basal polarity is compromised in early pupal photoreceptors, and no identifiable apical membrane domain is formed. Sdt, in contrast, plays a more limited role in apical-basal polarity but is essential for the proper localization of transmembrane protein Crumbs (Crb), known to be required in the biogenesis of stalk membrane. Loss of Sdt causes strong defects in stalk membrane and rhabdomere resembling crb mutant phenotype. Thus, proteins required for establishing the early embryonic epithelial polarity are used later for the morphogenesis of photoreceptors, with Baz and Sdt functioning in different aspects of the formation of the apical-basal cellular architecture.

  2. Magi Is Associated with the Par Complex and Functions Antagonistically with Bazooka to Regulate the Apical Polarity Complex

    PubMed Central

    Padash Barmchi, Mojgan; Samarasekera, Gayathri; Gilbert, Mary; Auld, Vanessa J.; Zhang, Bing

    2016-01-01

    The mammalian MAGI proteins play important roles in the maintenance of adherens and tight junctions. The MAGI family of proteins contains modular domains such as WW and PDZ domains necessary for scaffolding of membrane receptors and intracellular signaling components. Loss of MAGI leads to reduced junction stability while overexpression of MAGI can lead to increased adhesion and stabilization of epithelial morphology. However, how Magi regulates junction assembly in epithelia is largely unknown. We investigated the single Drosophila homologue of Magi to study the in vivo role of Magi in epithelial development. Magi is localized at the adherens junction and forms a complex with the polarity proteins, Par3/Bazooka and aPKC. We generated a Magi null mutant and found that Magi null mutants were viable with no detectable morphological defects even though the Magi protein is highly conserved with vertebrate Magi homologues. However, overexpression of Magi resulted in the displacement of Baz/Par3 and aPKC and lead to an increase in the level of PIP3. Interestingly, we found that Magi and Baz functioned in an antagonistic manner to regulate the localization of the apical polarity complex. Maintaining the balance between the level of Magi and Baz is an important determinant of the levels and localization of apical polarity complex. PMID:27074039

  3. Daily Physical Activity and Screen Time, but Not Other Sedentary Activities, Are Associated with Measures of Obesity during Childhood

    PubMed Central

    Lee, Shoo Thien; Wong, Jyh Eiin; Nik Shanita, Safii; Ismail, Mohd Noor; Deurenberg, Paul; Poh, Bee Koon

    2014-01-01

    Childhood obesity is related to low physical activity level and a sedentary lifestyle. The aim of this study was to assess the physical activity level and sedentary behaviour of Malaysian children aged 7 to 12 years and to examine their association with body mass index (BMI), BMI-for-age Z-score (BAZ), body fatness (%BF) and waist circumference (WC). A total of 1736 children, representing all ethnic groups were recruited from six regions of Malaysia. Anthropometric measurements included body weight, height and waist circumference. Body fat percentage (%BF) was assessed using bioelectrical impedance. Physical activity was assessed by a physical activity questionnaire (PAQ) in all children and by pedometers in a subsample (n = 514). PAQ score and pedometer step counts were negatively associated with BMI, BAZ, %BF and WC after adjusting for covariates. Screen time was positively associated with BAZ and WC. However, other sedentary activities were not significantly related with any anthropometric indicators. Strategies to promote active living among children in Malaysia should focus not only on increasing physical activity but also emphasise reduction in sedentary behaviours. PMID:25546277

  4. Tonotopic representation and space map in the non-primary auditory cortex of the mustached bat.

    PubMed

    Kujirai, K; Suga, N

    1983-01-01

    As auditory system has no sensory epithelium into which auditory space are projected, we studied the physiological map of the auditory space in the non-primary auditory cortex of the mustached bat by using the echo of their orientation sound. Ten bats were used as experimental subjects. Tungsten wire electrodes were inserted obliquely in the dorsomedial (DM) and ventroposterior (VP) areas of the non-primary auditory cortex. When single neuron was isolated, best frequency (BF), best azymuth (BAZ) and best elevation (BEL) were measured and were plotted on a schematic figure. To mimic its biosonar, one loudspeaker, delivering synthesized orientation sounds, was placed in front of the animal, and another loudspeaker delivering synthesized echo was mounted on a movable hoop. Tonotopic representation was observed but complicated in both areas, and those areas could be divided into several subdivisions consisting of the neuron groups characterized by three frequency bands. The neurons were thought to be related to the processing of biosonar informations from the facts that their BFs agreed with the scope of the FM sweep of each echo harmonics. The magnitude of the response showed rapid increase at their BAZ or BEL, so that the neurons seemed to tune to a certain direction in the auditory space. Especially in the DM area, neurons assumed a systematic arrangement of their BAZs on the cerebral surface and showed some tendency of a systematic arrangement of their BELs. The DM area was thought to have a kind of neural map of the auditory space.

  5. Daily physical activity and screen time, but not other sedentary activities, are associated with measures of obesity during childhood.

    PubMed

    Lee, Shoo Thien; Wong, Jyh Eiin; Shanita, Safii Nik; Ismail, Mohd Noor; Deurenberg, Paul; Poh, Bee Koon

    2015-01-01

    Childhood obesity is related to low physical activity level and a sedentary lifestyle. The aim of this study was to assess the physical activity level and sedentary behaviour of Malaysian children aged 7 to 12 years and to examine their association with body mass index (BMI), BMI-for-age Z-score (BAZ), body fatness (%BF) and waist circumference (WC). A total of 1736 children, representing all ethnic groups were recruited from six regions of Malaysia. Anthropometric measurements included body weight, height and waist circumference. Body fat percentage (%BF) was assessed using bioelectrical impedance. Physical activity was assessed by a physical activity questionnaire (PAQ) in all children and by pedometers in a subsample (n = 514). PAQ score and pedometer step counts were negatively associated with BMI, BAZ, %BF and WC after adjusting for covariates. Screen time was positively associated with BAZ and WC. However, other sedentary activities were not significantly related with any anthropometric indicators. Strategies to promote active living among children in Malaysia should focus not only on increasing physical activity but also emphasise reduction in sedentary behaviours. PMID:25546277

  6. Daily physical activity and screen time, but not other sedentary activities, are associated with measures of obesity during childhood.

    PubMed

    Lee, Shoo Thien; Wong, Jyh Eiin; Shanita, Safii Nik; Ismail, Mohd Noor; Deurenberg, Paul; Poh, Bee Koon

    2014-12-23

    Childhood obesity is related to low physical activity level and a sedentary lifestyle. The aim of this study was to assess the physical activity level and sedentary behaviour of Malaysian children aged 7 to 12 years and to examine their association with body mass index (BMI), BMI-for-age Z-score (BAZ), body fatness (%BF) and waist circumference (WC). A total of 1736 children, representing all ethnic groups were recruited from six regions of Malaysia. Anthropometric measurements included body weight, height and waist circumference. Body fat percentage (%BF) was assessed using bioelectrical impedance. Physical activity was assessed by a physical activity questionnaire (PAQ) in all children and by pedometers in a subsample (n = 514). PAQ score and pedometer step counts were negatively associated with BMI, BAZ, %BF and WC after adjusting for covariates. Screen time was positively associated with BAZ and WC. However, other sedentary activities were not significantly related with any anthropometric indicators. Strategies to promote active living among children in Malaysia should focus not only on increasing physical activity but also emphasise reduction in sedentary behaviours.

  7. Impact of nutritional recovery with linear growth on the concentrations of adipokines in undernourished children living in Brazilian slums.

    PubMed

    Martins, Vinicius J B; Neves, Andrea P O; Franco, Maria do C P; Clemente, Ana P G; Sawaya, Ana L

    2014-09-28

    Undernutrition in early life has been reported to be closely associated with the development of non-communicable diseases in adulthood. Adequate treatment is important for reversing these effects. In the present study, we investigated the effects of undernutrition and anthropometric recovery on the weights and heights of children in relation to the concentrations of leptin, adiponectin and plasminogen activator inhibitor-1 (PAI-1). A total of 119 children (aged 6-16 years) from the slums of São Paulo were selected according to their nutritional status and divided into three groups as follows: control (healthy without intervention, n 38) with a height-for-age Z score (HAZ) and a BMI-for-age Z score (BAZ) > -1·6; undernourished (HAZ and/or BAZ < -1·6, n 54); recovered from undernutrition (after treatment in a rehabilitation centre; HAZ and BAZ > -1·6, n 27). Blood samples were collected to determine insulin, glucose, leptin, adiponectin and PAI-1 concentrations. Leptin concentrations in the undernourished group were lower than those in the control and recovered groups (mean 0·92 (95% CI 0·67, 1·25), 2·03 (95% CI 1·46, 2·82) and 1·66 (95% CI 1·15, 2·44) ng/ml, P=0·003), which had similar leptin concentrations. There were no differences in adiponectin and PAI-1 concentrations among the groups. A positive correlation between waist circumference and leptin concentrations was observed in all the girls and boys of the control group (control: r 0·729, P<0·01; undernourished: r 0·490, P<0·05; and recovered: r 0·829, P<0·01; r 0·673, P<0·05). Stronger correlations between leptin and insulin concentrations were observed in the recovered group. The results of the present study indicate that normal leptin concentrations are found when normal height and weight are achieved.

  8. Effect of Age at Antiretroviral Therapy Initiation on Catch-Up Growth within the First 24 Months among HIV-Infected Children in the IeDEA West African Pediatric Cohort

    PubMed Central

    Jesson, Julie; Koumakpaï, Sikiratou; Diagne, Ndeye R.; Amorissani-Folquet, Madeleine; Kouéta, Fla; Aka, Addi; Lawson-Evi, Koko; Dicko, Fatoumata; Kouakou, Kouadio; Pety, Touré; Renner, Lorna; Eboua, Tanoh; Coffie, Patrick A.; Desmonde, Sophie; Leroy, Valériane

    2015-01-01

    Background We described malnutrition and the effect of age at antiretroviral therapy (ART) initiation on catch-up growth over 24 months among HIV-infected children enrolled in the IeDEA West African paediatric cohort (pWADA). Methods Malnutrition was defined at ART initiation (baseline) by a Z-score <-2 SD, according to three anthropometric indicators: Weight-for-age (WAZ) for underweight, Height-for-age (HAZ) for stunting, and Weight-for-Height/BMI-for-age (WHZ/BAZ) for wasting. Kaplan-Meier estimates for catch-up growth (Z-score ≥-2 SD) on ART, adjusted for gender, immunodeficiency and malnutrition at ART initiation, ART regimen, time period and country, were compared by age at ART initiation. Cox proportional hazards regression models determined predictors of catch-up growth on ART over 24 months. Results Between 2001 and 2012, 2004 HIV-infected children < 10 years of age were included. At ART initiation, 51% were underweight, 48% were stunted and 33% were wasted. The 24-month adjusted estimates for catch-up growth were 69% (95% confidence interval [CI]: 57;80), 61% (95%CI: 47;70), and 90% (95%CI: 76;95) for WAZ, HAZ, and WHZ/BAZ, respectively. Adjusted catch-up growth was more likely for children <5 years of age at ART initiation compared to children ≥5 years for WAZ, HAZ (P<0.001), and for WHZ/BAZ (P = 0.026). Conclusions Malnutrition among these children is an additional burden that has to be urgently managed. Despite a significant growth improvement after 24 months on ART, especially in children <5 years, a substantial proportion of children still never achieved catch-up growth. Nutritional care should be part of the global healthcare of HIV-infected children in sub-Saharan Africa. PMID:25955835

  9. Skim milk, whey, and casein increase body weight and whey and casein increase the plasma C-peptide concentration in overweight adolescents.

    PubMed

    Arnberg, Karina; Mølgaard, Christian; Michaelsen, Kim Fleischer; Jensen, Signe Marie; Trolle, Ellen; Larnkjær, Anni

    2012-12-01

    In adults, dietary protein seems to induce weight loss and dairy proteins may be insulinotropic. However, the effect of milk proteins in adolescents is unclear. The objective was to test whether milk and milk proteins reduce body weight, waist circumference, homeostatic model assessment, plasma insulin, and insulin secretion estimated as the plasma C-peptide concentration in overweight adolescents. Overweight adolescents (n = 203) aged 12-15 y with a BMI of 25.4 ± 2.3 kg/m(2) (mean ± SD) were randomized to 1 L/d of skim milk, whey, casein, or water for 12 wk. All milk drinks contained 35 g protein/L. Before randomization, a subgroup of adolescents (n = 32) was studied for 12 wk before the intervention began as a pretest control group. The effects of the milk-based test drinks were compared with baseline (wk 0), the water group, and the pretest control group. Diet and physical activity were registered. Outcomes were BMI-for-age Z-scores (BAZs), waist circumference, plasma insulin, homeostatic model assessment, and plasma C-peptide. We found no change in BAZ in the pretest control and water groups, whereas it was greater at 12 wk in the skim milk, whey, and casein groups compared with baseline and with the water and pretest control groups. The plasma C-peptide concentration increased from baseline to wk 12 in the whey and casein groups and increments were greater than in the pretest control (P < 0.02). There were no significant changes in plasma C-peptide in the skim milk or water group. These data suggest that high intakes of skim milk, whey, and casein increase BAZs in overweight adolescents and that whey and casein increase insulin secretion. Whether the effect on body weight is primary or secondary to the increased insulin secretion remains to be elucidated.

  10. Relationship between anthropometric indicators and cognitive performance in Southeast Asian school-aged children.

    PubMed

    Sandjaja; Poh, Bee Koon; Rojroonwasinkul, Nipa; Le Nyugen, Bao Khanh; Budiman, Basuki; Ng, Lai Oon; Soonthorndhada, Kusol; Xuyen, Hoang Thi; Deurenberg, Paul; Parikh, Panam

    2013-09-01

    Nutrition is an important factor in mental development and, as a consequence, in cognitive performance. Malnutrition is reflected in children's weight, height and BMI curves. The present cross-sectional study aimed to evaluate the association between anthropometric indices and cognitive performance in 6746 school-aged children (aged 6-12 years) of four Southeast Asian countries: Indonesia; Malaysia; Thailand; Vietnam. Cognitive performance (non-verbal intelligence quotient (IQ)) was measured using Raven's Progressive Matrices test or Test of Non-Verbal Intelligence, third edition (TONI-3). Height-for-age z-scores (HAZ), weight-for-age z-scores (WAZ) and BMI-for-age z-scores (BAZ) were used as anthropometric nutritional status indices. Data were weighted using age, sex and urban/rural weight factors to resemble the total primary school-aged population per country. Overall, 21% of the children in the four countries were underweight and 19% were stunted. Children with low WAZ were 3·5 times more likely to have a non-verbal IQ < 89 (OR 3·53 and 95% CI 3·52, 3·54). The chance of having a non-verbal IQ < 89 was also doubled with low BAZ and HAZ. In contrast, except for severe obesity, the relationship between high BAZ and IQ was less clear and differed per country. The odds of having non-verbal IQ levels < 89 also increased with severe obesity. In conclusion, undernourishment and non-verbal IQ are significantly associated in 6-12-year-old children. Effective strategies to improve nutrition in preschoolers and school-aged children can have a pronounced effect on cognition and, in the longer term, help in positively contributing to individual and national development.

  11. Relationship between anthropometric indicators and cognitive performance in Southeast Asian school-aged children.

    PubMed

    Sandjaja; Poh, Bee Koon; Rojroonwasinkul, Nipa; Le Nyugen, Bao Khanh; Budiman, Basuki; Ng, Lai Oon; Soonthorndhada, Kusol; Xuyen, Hoang Thi; Deurenberg, Paul; Parikh, Panam

    2013-09-01

    Nutrition is an important factor in mental development and, as a consequence, in cognitive performance. Malnutrition is reflected in children's weight, height and BMI curves. The present cross-sectional study aimed to evaluate the association between anthropometric indices and cognitive performance in 6746 school-aged children (aged 6-12 years) of four Southeast Asian countries: Indonesia; Malaysia; Thailand; Vietnam. Cognitive performance (non-verbal intelligence quotient (IQ)) was measured using Raven's Progressive Matrices test or Test of Non-Verbal Intelligence, third edition (TONI-3). Height-for-age z-scores (HAZ), weight-for-age z-scores (WAZ) and BMI-for-age z-scores (BAZ) were used as anthropometric nutritional status indices. Data were weighted using age, sex and urban/rural weight factors to resemble the total primary school-aged population per country. Overall, 21% of the children in the four countries were underweight and 19% were stunted. Children with low WAZ were 3·5 times more likely to have a non-verbal IQ < 89 (OR 3·53 and 95% CI 3·52, 3·54). The chance of having a non-verbal IQ < 89 was also doubled with low BAZ and HAZ. In contrast, except for severe obesity, the relationship between high BAZ and IQ was less clear and differed per country. The odds of having non-verbal IQ levels < 89 also increased with severe obesity. In conclusion, undernourishment and non-verbal IQ are significantly associated in 6-12-year-old children. Effective strategies to improve nutrition in preschoolers and school-aged children can have a pronounced effect on cognition and, in the longer term, help in positively contributing to individual and national development. PMID:24016767

  12. Planar Cell Polarity Breaks the Symmetry of PAR Protein Distribution prior to Mitosis in Drosophila Sensory Organ Precursor Cells.

    PubMed

    Besson, Charlotte; Bernard, Fred; Corson, Francis; Rouault, Hervé; Reynaud, Elodie; Keder, Alyona; Mazouni, Khalil; Schweisguth, François

    2015-04-20

    During development, cell-fate diversity can result from the unequal segregation of fate determinants at mitosis. Polarization of the mother cell is essential for asymmetric cell division (ACD). It often involves the formation of a cortical domain containing the PAR complex proteins Par3, Par6, and atypical protein kinase C (aPKC). In the fly notum, sensory organ precursor cells (SOPs) divide asymmetrically within the plane of the epithelium and along the body axis to generate two distinct cells. Fate asymmetry depends on the asymmetric localization of the PAR complex. In the absence of planar cell polarity (PCP), SOPs divide with a random planar orientation but still asymmetrically, showing that PCP is dispensable for PAR asymmetry at mitosis. To study when and how the PAR complex localizes asymmetrically, we have used a quantitative imaging approach to measure the planar polarization of the proteins Bazooka (Baz, fly Par3), Par6, and aPKC in living pupae. By using imaging of functional GFP-tagged proteins with image processing and computational modeling, we find that Baz, Par6, and aPKC become planar polarized prior to mitosis in a manner independent of the AuroraA kinase and that PCP is required for the planar polarization of Baz, Par6, and aPKC during interphase. This indicates that a "mitosis rescue" mechanism establishes asymmetry at mitosis in PCP mutants. This study therefore identifies PCP as the initial symmetry-breaking signal for the planar polarization of PAR proteins in asymmetrically dividing SOPs.

  13. Planar Cell Polarity Breaks the Symmetry of PAR Protein Distribution prior to Mitosis in Drosophila Sensory Organ Precursor Cells.

    PubMed

    Besson, Charlotte; Bernard, Fred; Corson, Francis; Rouault, Hervé; Reynaud, Elodie; Keder, Alyona; Mazouni, Khalil; Schweisguth, François

    2015-04-20

    During development, cell-fate diversity can result from the unequal segregation of fate determinants at mitosis. Polarization of the mother cell is essential for asymmetric cell division (ACD). It often involves the formation of a cortical domain containing the PAR complex proteins Par3, Par6, and atypical protein kinase C (aPKC). In the fly notum, sensory organ precursor cells (SOPs) divide asymmetrically within the plane of the epithelium and along the body axis to generate two distinct cells. Fate asymmetry depends on the asymmetric localization of the PAR complex. In the absence of planar cell polarity (PCP), SOPs divide with a random planar orientation but still asymmetrically, showing that PCP is dispensable for PAR asymmetry at mitosis. To study when and how the PAR complex localizes asymmetrically, we have used a quantitative imaging approach to measure the planar polarization of the proteins Bazooka (Baz, fly Par3), Par6, and aPKC in living pupae. By using imaging of functional GFP-tagged proteins with image processing and computational modeling, we find that Baz, Par6, and aPKC become planar polarized prior to mitosis in a manner independent of the AuroraA kinase and that PCP is required for the planar polarization of Baz, Par6, and aPKC during interphase. This indicates that a "mitosis rescue" mechanism establishes asymmetry at mitosis in PCP mutants. This study therefore identifies PCP as the initial symmetry-breaking signal for the planar polarization of PAR proteins in asymmetrically dividing SOPs. PMID:25843034

  14. The Costs and Cost-Effectiveness of a School-Based Comprehensive Intervention Study on Childhood Obesity in China

    PubMed Central

    Meng, Liping; Xu, Haiquan; Liu, Ailing; van Raaij, Joop; Bemelmans, Wanda; Hu, Xiaoqi; Zhang, Qian; Du, Songming; Fang, Hongyun; Ma, Jun; Xu, Guifa; Li, Ying; Guo, Hongwei; Du, Lin; Ma, Guansheng

    2013-01-01

    Background The dramatic rise of overweight and obesity among Chinese children has greatly affected the social economic development. However, no information on the cost-effectiveness of interventions in China is available. The objective of this study is to evaluate the cost and the cost-effectiveness of a comprehensive intervention program for childhood obesity. We hypothesized the integrated intervention which combined nutrition education and physical activity (PA) is more cost-effective than the same intensity of single intervention. Methods And Findings: A multi-center randomized controlled trial conducted in six large cities during 2009-2010. A total of 8301 primary school students were categorized into five groups and followed one academic year. Nutrition intervention, PA intervention and their shared common control group were located in Beijing. The combined intervention and its’ control group were located in other 5 cities. In nutrition education group, ‘nutrition and health classes’ were given 6 times for the students, 2 times for the parents and 4 times for the teachers and health workers. "Happy 10" was carried out twice per day in PA group. The comprehensive intervention was a combination of nutrition and PA interventions. BMI and BAZ increment was 0.65 kg/m2 (SE 0.09) and 0.01 (SE 0.11) in the combined intervention, respectively, significantly lower than that in its’ control group (0.82±0.09 for BMI, 0.10±0.11 for BAZ). No significant difference were found neither in BMI nor in BAZ change between the PA intervention and its’ control, which is the same case in the nutrition intervention. The single intervention has a relative lower intervention costs compared with the combined intervention. Labor costs in Guangzhou, Shanghai and Jinan was higher compared to other cities. The cost-effectiveness ratio was $120.3 for BMI and $249.3 for BAZ in combined intervention, respectively. Conclusions The school-based integrated obesity intervention program

  15. Localization and Function of Pals1-associated Tight Junction Protein in Drosophila Is Regulated by Two Distinct Apical Complexes.

    PubMed

    Sen, Arnab; Sun, Rui; Krahn, Michael P

    2015-05-22

    The transmembrane protein Crumbs (Crb) and its intracellular adaptor protein Pals1 (Stardust, Sdt in Drosophila) play a crucial role in the establishment and maintenance of apical-basal polarity in epithelial cells in various organisms. In contrast, the multiple PDZ domain-containing protein Pals1-associated tight junction protein (PATJ), which has been described to form a complex with Crb/Sdt, is not essential for apical basal polarity or for the stability of the Crb/Sdt complex in the Drosophila epidermis. Here we show that, in the embryonic epidermis, Sdt is essential for the correct subcellular localization of PATJ in differentiated epithelial cells but not during cellularization. Consistently, the L27 domain of PATJ is crucial for the correct localization and function of the protein. Our data further indicate that the four PDZ domains of PATJ function, to a large extent, in redundancy, regulating the function of the protein. Interestingly, the PATJ-Sdt heterodimer is not only recruited to the apical cell-cell contacts by binding to Crb but depends on functional Bazooka (Baz). However, biochemical experiments show that PATJ associates with both complexes, the Baz-Sdt and the Crb-Sdt complex, in the mature epithelium of the embryonic epidermis, suggesting a role of these two complexes for the function of PATJ during the development of Drosophila.

  16. Localization and Function of Pals1-associated Tight Junction Protein in Drosophila Is Regulated by Two Distinct Apical Complexes*

    PubMed Central

    Sen, Arnab; Sun, Rui; Krahn, Michael P.

    2015-01-01

    The transmembrane protein Crumbs (Crb) and its intracellular adaptor protein Pals1 (Stardust, Sdt in Drosophila) play a crucial role in the establishment and maintenance of apical-basal polarity in epithelial cells in various organisms. In contrast, the multiple PDZ domain-containing protein Pals1-associated tight junction protein (PATJ), which has been described to form a complex with Crb/Sdt, is not essential for apical basal polarity or for the stability of the Crb/Sdt complex in the Drosophila epidermis. Here we show that, in the embryonic epidermis, Sdt is essential for the correct subcellular localization of PATJ in differentiated epithelial cells but not during cellularization. Consistently, the L27 domain of PATJ is crucial for the correct localization and function of the protein. Our data further indicate that the four PDZ domains of PATJ function, to a large extent, in redundancy, regulating the function of the protein. Interestingly, the PATJ-Sdt heterodimer is not only recruited to the apical cell-cell contacts by binding to Crb but depends on functional Bazooka (Baz). However, biochemical experiments show that PATJ associates with both complexes, the Baz-Sdt and the Crb-Sdt complex, in the mature epithelium of the embryonic epidermis, suggesting a role of these two complexes for the function of PATJ during the development of Drosophila. PMID:25847234

  17. Biobased polyesters with composition-dependent thermomechanical properties: synthesis and characterization of poly(butylene succinate-co-butylene azelate).

    PubMed

    Mincheva, Rosica; Delangre, Adrien; Raquez, Jean-Marie; Narayan, Ramani; Dubois, Philippe

    2013-03-11

    Environmentally friendly poly(butylenesuccinate-co-butyleneazelate) (P(BS-co-BAz)s) aliphatic copolyesters with composition-dependent thermomechanical properties were synthesized from succinic acid (SuA), 1,4-butanediol (BDO), and dimethylazelate (DMAz) through a two-step polycondensation reaction. The molar SuA/AzA ratio was varied from 4:1 to 1:4, and the chemical structure and molecular characteristics of resulting (co)polyesters were characterized by NMR and SEC, whereas thermal properties and crystallinity were studied by differential scanning calorimetry (DSC), dynamic mechanical thermal analyses (DMTA), and X-ray diffraction (XRD). A good agreement between theoretical and experimental SuA/AzA molar ratios in the copolyesters was achieved, together with the recovery of semicrystalline random copolymers of uniform composition along the chains. NMR, DSC, DMTA, and XRD results show that depending on their composition the P(BS-co-BAz) copolyesters might find applications from elastomers to high-impact thermoplastics.

  18. Smaller and larger deletions of the Williams Beuren syndrome region implicate genes involved in mild facial phenotype, epilepsy and autistic traits

    PubMed Central

    Fusco, Carmela; Micale, Lucia; Augello, Bartolomeo; Teresa Pellico, Maria; Menghini, Deny; Alfieri, Paolo; Cristina Digilio, Maria; Mandriani, Barbara; Carella, Massimo; Palumbo, Orazio; Vicari, Stefano; Merla, Giuseppe

    2014-01-01

    Williams Beuren syndrome (WBS) is a multisystemic disorder caused by a hemizygous deletion of 1.5 Mb on chromosome 7q11.23 spanning 28 genes. A few patients with larger and smaller WBS deletion have been reported. They show clinical features that vary between isolated SVAS to the full spectrum of WBS phenotype, associated with epilepsy or autism spectrum behavior. Here we describe four patients with atypical WBS 7q11.23 deletions. Two carry ∼3.5 Mb larger deletion towards the telomere that includes Huntingtin-interacting protein 1 (HIP1) and tyrosine 3-monooxygenase/tryptophan 5-monooxigenase activation protein gamma (YWHAG) genes. Other two carry a shorter deletion of ∼1.2 Mb at centromeric side that excludes the distal WBS genes BAZ1B and FZD9. Along with previously reported cases, genotype–phenotype correlation in the patients described here further suggests that haploinsufficiency of HIP1 and YWHAG might cause the severe neurological and neuropsychological deficits including epilepsy and autistic traits, and that the preservation of BAZ1B and FZD9 genes may be related to mild facial features and moderate neuropsychological deficits. This report highlights the importance to characterize additional patients with 7q11.23 atypical deletions comparing neuropsychological and clinical features between these individuals to shed light on the pathogenic role of genes within and flanking the WBS region. PMID:23756441

  19. Phase Structures and Piezoelectric Properties of (K,Na,Li)(Nb,Sb)O3-(Bi,Ag)ZrO3 Lead-Free Ceramics

    NASA Astrophysics Data System (ADS)

    Li, ZhiPeng; Zhang, Yang; Li, LingYu; Li, JianKang; Zhai, JiWei

    2016-06-01

    Samples in the pseudoternary lead-free piezoelectric ceramic system 0.94KNN-(0.06 - x)LiSbO3- x(Bi0.5Ag0.5)ZrO3 were prepared using a solid-state reaction technique and their phase transition behavior and electrical properties studied. Results showed that BAZ diffuses into KNN-LS to form a new solid solution, and induces a phase transition from tetragonal to rhombohedral phase with increase of x. At 0.02 ≤ x ≤ 0.03, coexistence of tetragonal and rhombohedral phases is observed, and enhanced piezoelectric properties are achieved in this composition range due to the polymorphic phase transition near room temperature. Doping with (Bi0.5Ag0.5)ZrO3 effectively promotes densification and further enhances the piezoelectric and dielectric properties of of the ceramics. Moreover, the ceramic with x = 0.025 possesses excellent electrical properties of k p = 42.3%, {d_{33}^{*}} = 320 pm/V and d 33 = 235 pC/N, tan δ = 0.039, and T c = 326°C. This result indicates that 0.94KNN-0.035LS-0.025BAZ ceramic is a promising lead-free material for practical applications.

  20. Smaller and larger deletions of the Williams Beuren syndrome region implicate genes involved in mild facial phenotype, epilepsy and autistic traits.

    PubMed

    Fusco, Carmela; Micale, Lucia; Augello, Bartolomeo; Teresa Pellico, Maria; Menghini, Deny; Alfieri, Paolo; Cristina Digilio, Maria; Mandriani, Barbara; Carella, Massimo; Palumbo, Orazio; Vicari, Stefano; Merla, Giuseppe

    2014-01-01

    Williams Beuren syndrome (WBS) is a multisystemic disorder caused by a hemizygous deletion of 1.5 Mb on chromosome 7q11.23 spanning 28 genes. A few patients with larger and smaller WBS deletion have been reported. They show clinical features that vary between isolated SVAS to the full spectrum of WBS phenotype, associated with epilepsy or autism spectrum behavior. Here we describe four patients with atypical WBS 7q11.23 deletions. Two carry ~3.5 Mb larger deletion towards the telomere that includes Huntingtin-interacting protein 1 (HIP1) and tyrosine 3-monooxygenase/tryptophan 5-monooxigenase activation protein gamma (YWHAG) genes. Other two carry a shorter deletion of ~1.2 Mb at centromeric side that excludes the distal WBS genes BAZ1B and FZD9. Along with previously reported cases, genotype-phenotype correlation in the patients described here further suggests that haploinsufficiency of HIP1 and YWHAG might cause the severe neurological and neuropsychological deficits including epilepsy and autistic traits, and that the preservation of BAZ1B and FZD9 genes may be related to mild facial features and moderate neuropsychological deficits. This report highlights the importance to characterize additional patients with 7q11.23 atypical deletions comparing neuropsychological and clinical features between these individuals to shed light on the pathogenic role of genes within and flanking the WBS region.

  1. Predicted reliability of aerospace electronics: Application of two advanced probabilistic concepts

    NASA Astrophysics Data System (ADS)

    Suhir, E.

    Two advanced probabilistic design-for-reliability (PDfR) concepts are addressed and discussed in application to the prediction, quantification and assurance of the aerospace electronics reliability: 1) Boltzmann-Arrhenius-Zhurkov (BAZ) model, which is an extension of the currently widely used Arrhenius model and, in combination with the exponential law of reliability, enables one to obtain a simple, easy-to-use and physically meaningful formula for the evaluation of the probability of failure (PoF) of a material or a device after the given time in operation at the given temperature and under the given stress (not necessarily mechanical), and 2) Extreme Value Distribution (EVD) technique that can be used to assess the number of repetitive loadings that result in the material/device degradation and eventually lead to its failure by closing, in a step-wise fashion, the gap between the bearing capacity (stress-free activation energy) of the material or the device and the demand (loading). It is shown that the material degradation (aging, damage accumulation, flaw propagation, etc.) can be viewed, when BAZ model is considered, as a Markovian process, and that the BAZ model can be obtained as the ultimate steady-state solution to the well-known Fokker-Planck equation in the theory of Markovian processes. It is shown also that the BAZ model addresses the worst, but a reasonably conservative, situation. It is suggested therefore that the transient period preceding the condition addressed by the steady-state BAZ model need not be accounted for in engineering evaluations. However, when there is an interest in understanding the transient degradation process, the obtained solution to the Fokker-Planck equation can be used for this purpose. As to the EVD concept, it attributes the degradation process to the accumulation of damages caused by a train of repetitive high-level loadings, while loadings of levels that are considerably lower than their extreme values do not contribute

  2. Participation in the Juntos Conditional Cash Transfer Program in Peru Is Associated with Changes in Child Anthropometric Status but Not Language Development or School Achievement1234

    PubMed Central

    Andersen, Christopher T; Reynolds, Sarah A; Behrman, Jere R; Crookston, Benjamin T; Dearden, Kirk A; Escobal, Javier; Mani, Subha; Sánchez, Alan; Stein, Aryeh D; Fernald, Lia CH

    2015-01-01

    Background: It is unclear what effects a conditional cash transfer (CCT) program would have on child anthropometry, language development, or school achievement in the context of the nutrition transition experienced by many low- and middle-income countries. Objective: We estimated the association of participation in Peru’s Juntos CCT with anthropometry, language development, and school achievement among children aged 7–8 y. Methods: We used data from the Young Lives Study of a cohort born between 2001 and 2002. We estimated associations of the Juntos program with height-for-age z score (HAZ), body mass index–for–age z score (BAZ), stunting, and overweight at age 7–8 y separately for children participating in the program for ≥2 y (n = 169) and children participating for <2 y (n = 188). We then estimated associations with receptive vocabulary and grade achievement among children who had been assessed at age 4–6 y before enrollment in Juntos (n = 243). We identified control subjects using propensity score matching and conducted difference-in-differences comparisons. Results: Juntos participation was associated with increases in HAZ among boys participating for ≥2 y [average effect of treatment among the treated (ATT): 0.43; 95% CI: 0.09, 0.77; P = 0.01] and for boys participating for <2 y (ATT: 0.52; 95% CI: 0.23, 0.80; P < 0.01). Among girls participating in the program for ≥2 y, BAZ declined (ATT: –0.60; 95% CI: –1.00, –0.21; P < 0.01) as did the prevalence of overweight (ATT: –22.0 percentage points; 95% CI: –42.5, –2.7 percentage points; P = 0.03). We observed no significant associations of Juntos participation with receptive vocabulary or grade attainment. Conclusions: CCT program participation in Peru was associated with better linear growth among boys and decreased BAZ among girls, highlighting that a large-scale poverty-alleviation intervention may influence anthropometric outcomes in the context of the nutrition transition. PMID

  3. Rapid Infancy Weight Gain and 7- to 9-year Childhood Obesity Risk: A Prospective Cohort Study in Rural Western China.

    PubMed

    Zhou, Jing; Dang, Shaonong; Zeng, Lingxia; Gao, Wenlong; Wang, Duolao; Li, Qiang; Jiang, Wenhui; Pei, Leilei; Li, Chao; Yan, Hong

    2016-04-01

    Obesity is increasing in developing countries. This study aimed to identify the association between rapid infancy weight gain and obesity risk among early school-age children. A total of 581 singletons (349 boys, 232 girls) whose mothers participated in an antenatal multiple micronutrient supplement trial in rural western China were followed from birth to between 7 and 9 years of age. Height and weight were measured at birth, 1.5 years, and between 7 and 9 years. At the 7- to 9-year time point, body composition was determined using bioelectrical impedance analysis. Multilevel mixed analysis was used to test the associations between rapid weight gain in infancy (from birth to age 1.5 years) and body size and composition or overweight/obesity among early school-age children. Overall, 31.2% (181 of 581) of the infants showed a weight-for-age Z score gain greater than 0.67 between birth and 1.5 years, indicating rapid weight gain. Approximately 5.7% (33 of 579) of the subjects were overweight (BMI-for-age Z scores [BAZ] >1 and ≤2) or obese (BAZ >2). Rapid infancy weight gain was associated with a higher BAZ (P < 0.001), mid-upper arm circumferences (P < 0.001), percentage body fat (P < 0.001), and fat mass index (P < 0.001) at 7 to 9 years of age after adjusting for biological and social economic factors, genetic factors, and perinatal and postnatal factors. These associations appeared to be independent of gender, economic status at early school age, and maternal nutritional status at enrollment. Rapid growers may have approximately 3 times the risk of being overweight/obese during the early school-age years (odds ratio = 2.94, 95% CI: 1.17-7.43, P = 0.022). Rapid infancy weight gain is a risk factor for being overweight/obesity among early school-age children in rural western China. We propose that social and biological determinants, such as economic status, physical activity, and feeding practice, should be targeted to prevent obesity.

  4. Serum Trans Fatty Acids Are Not Associated with Weight Gain or Linear Growth in School-Age Children123

    PubMed Central

    Baylin, Ana; Perng, Wei; Mora-Plazas, Mercedes; Marin, Constanza; Villamor, Eduardo

    2015-01-01

    Background: Animal and human adult studies indicate that long-term intake of trans fatty acids (TFAs) may be associated with weight gain. High intake of fast foods and snacks, which are rich in TFAs, is linked to overweight status among school-age children. However, the specific effects of TFAs in this population are unknown. Objective: We examined whether serum TFAs, used as biomarkers of intake, are associated with faster weight gain and linear growth during school years. Methods: We quantified TFAs by GLC in serum samples of 668 children aged 5–12 y at the time of recruitment into an ongoing cohort study performed in Bogota (Colombia) since 2006. Serum proportions of trans palmitoleic acid (16:1t), trans oleic acid (18:1t), trans linoleic acid (18:2t), and total TFAs were used as biomarkers of intake. Anthropometric characteristics were measured periodically for a median of 30 mo. Body mass index-for-age z scores (BAZs) and height-for-age z scores (HAZs) were calculated with the use of the WHO reference. We estimated mean changes in BAZs and HAZs over follow-up according to quartiles of each TFA at baseline by using mixed-effects regression models with restricted cubic splines. Results: Proportions of trans palmitoleic acid, trans oleic acid, trans linoleic acid, and total TFAs (mean ± SD, % of total serum FAs), were 0.22 ± 0.06, 0.91 ± 0.37, 0.96 ± 0.27, and 2.10 ± 0.59, respectively. Serum TFAs were not associated with changes in BAZs and HAZs after adjusting for sex, baseline age, and socioeconomic status. In a subgroup analysis by sex, serum trans palmitoleic acid was positively associated with the estimated change in HAZs from ages 6 to 14 y in boys (with use of the first quartile as the reference, differences in HAZs for trans palmitoleic acid quartiles were 0.73, 0.53, and 0.70, P-trend = 0.03). Conclusions: Proportions of serum TFAs, used as biomarkers of TFA intake, were not associated with weight gain in children aged 6–14 y in low- and middle

  5. Rapid Infancy Weight Gain and 7- to 9-year Childhood Obesity Risk

    PubMed Central

    Zhou, Jing; Dang, Shaonong; Zeng, Lingxia; Gao, Wenlong; Wang, Duolao; Li, Qiang; Jiang, Wenhui; Pei, Leilei; Li, Chao; Yan, Hong

    2016-01-01

    Abstract Obesity is increasing in developing countries. This study aimed to identify the association between rapid infancy weight gain and obesity risk among early school-age children. A total of 581 singletons (349 boys, 232 girls) whose mothers participated in an antenatal multiple micronutrient supplement trial in rural western China were followed from birth to between 7 and 9 years of age. Height and weight were measured at birth, 1.5 years, and between 7 and 9 years. At the 7- to 9-year time point, body composition was determined using bioelectrical impedance analysis. Multilevel mixed analysis was used to test the associations between rapid weight gain in infancy (from birth to age 1.5 years) and body size and composition or overweight/obesity among early school-age children. Overall, 31.2% (181 of 581) of the infants showed a weight-for-age Z score gain greater than 0.67 between birth and 1.5 years, indicating rapid weight gain. Approximately 5.7% (33 of 579) of the subjects were overweight (BMI-for-age Z scores [BAZ] >1 and ≤2) or obese (BAZ >2). Rapid infancy weight gain was associated with a higher BAZ (P < 0.001), mid-upper arm circumferences (P < 0.001), percentage body fat (P < 0.001), and fat mass index (P < 0.001) at 7 to 9 years of age after adjusting for biological and social economic factors, genetic factors, and perinatal and postnatal factors. These associations appeared to be independent of gender, economic status at early school age, and maternal nutritional status at enrollment. Rapid growers may have approximately 3 times the risk of being overweight/obese during the early school-age years (odds ratio = 2.94, 95% CI: 1.17–7.43, P = 0.022). Rapid infancy weight gain is a risk factor for being overweight/obesity among early school-age children in rural western China. We propose that social and biological determinants, such as economic status, physical activity, and feeding practice, should be targeted to prevent

  6. Rapid Infancy Weight Gain and 7- to 9-year Childhood Obesity Risk: A Prospective Cohort Study in Rural Western China.

    PubMed

    Zhou, Jing; Dang, Shaonong; Zeng, Lingxia; Gao, Wenlong; Wang, Duolao; Li, Qiang; Jiang, Wenhui; Pei, Leilei; Li, Chao; Yan, Hong

    2016-04-01

    Obesity is increasing in developing countries. This study aimed to identify the association between rapid infancy weight gain and obesity risk among early school-age children. A total of 581 singletons (349 boys, 232 girls) whose mothers participated in an antenatal multiple micronutrient supplement trial in rural western China were followed from birth to between 7 and 9 years of age. Height and weight were measured at birth, 1.5 years, and between 7 and 9 years. At the 7- to 9-year time point, body composition was determined using bioelectrical impedance analysis. Multilevel mixed analysis was used to test the associations between rapid weight gain in infancy (from birth to age 1.5 years) and body size and composition or overweight/obesity among early school-age children. Overall, 31.2% (181 of 581) of the infants showed a weight-for-age Z score gain greater than 0.67 between birth and 1.5 years, indicating rapid weight gain. Approximately 5.7% (33 of 579) of the subjects were overweight (BMI-for-age Z scores [BAZ] >1 and ≤2) or obese (BAZ >2). Rapid infancy weight gain was associated with a higher BAZ (P < 0.001), mid-upper arm circumferences (P < 0.001), percentage body fat (P < 0.001), and fat mass index (P < 0.001) at 7 to 9 years of age after adjusting for biological and social economic factors, genetic factors, and perinatal and postnatal factors. These associations appeared to be independent of gender, economic status at early school age, and maternal nutritional status at enrollment. Rapid growers may have approximately 3 times the risk of being overweight/obese during the early school-age years (odds ratio = 2.94, 95% CI: 1.17-7.43, P = 0.022). Rapid infancy weight gain is a risk factor for being overweight/obesity among early school-age children in rural western China. We propose that social and biological determinants, such as economic status, physical activity, and feeding practice, should be targeted to prevent obesity. PMID

  7. A new concept for creating the basic map

    NASA Astrophysics Data System (ADS)

    Parzyński, Zenon

    2014-12-01

    A lot of changes have been made to the legislative regulations associated with geodesy during the implementation of the INSPIRE Directive in Poland (amongst others, the structure of databases). There have also been great changes concerning the basic map and the method of its creation and updating. A new concept for creating the basic map is presented in this article Dokonaliśmy wielu zmian w prawnych regulacjach dotyczących geodezji w trakcie implementacji Dyrektywy INSPIRE w Polsce (m.in. struktury baz danych). Bardzo duże zmiany objęły mapę zasadniczą i procedury jej tworzenia i uaktualniania. W artykule jest zaprezentowana nowa koncepcja tworzenia mapy zasadniczej.

  8. Disrupting Acetyl-Lysine Recognition: Progress in the Development of Bromodomain Inhibitors.

    PubMed

    Romero, F Anthony; Taylor, Alexander M; Crawford, Terry D; Tsui, Vickie; Côté, Alexandre; Magnuson, Steven

    2016-02-25

    Bromodomains, small protein modules that recognize acetylated lysine on histones, play a significant role in the epigenome, where they function as "readers" that ultimately determine the functional outcome of the post-translational modification. Because the initial discovery of selective BET inhibitors have helped define the role of that protein family in oncology and inflammation, BET bromodomains have continued to garner the most attention of any other bromodomain. More recently, non-BET bromodomain inhibitors that are potent and selective have been disclosed for ATAD2, CBP, BRD7/9, BRPF, BRPF/TRIM24, CECR2, SMARCA4, and BAZ2A/B. Such novel inhibitors can be used to probe the physiological function of these non-BET bromodomains and further understanding of their role in certain disease states. Here, we provide an update to the progress in identifying selective bromodomain inhibitors and their use as biological tools, as well as our perspective on the field.

  9. [The historical environment from which Social Service emerged].

    PubMed

    Ramírez López, Celia

    2012-01-01

    The historic background in which Social Service appeared dates back to the time when L. Cárdenas (1934-1940) was president of Mexico. In 1935, the reaction of the University to the reformation of article 3 was considered as an antirevolutionary behavior and was seen as opposite to the State's education project. Our history begins in this scenario. During L. Chico Goerne's term, the University signs a new agreement with the Government in which, among other things, the Social Service as a mandatory requirement to obtain a university degree is established. Thus, the mandatory Social Service organized by G. Baz, director of the Facultad de Medicina, who reinforced it as the University rector. Since the establishment of the Social Service, the University did not have to fight for financial support and also restored its prestige and social usefulness before the government that used to exclude the University from its project.

  10. Inhibition of copper corrosion by bis-(1,1‧-benzotriazoly)-α,ω-diamide compounds in aerated sulfuric acid solution

    NASA Astrophysics Data System (ADS)

    Zhang, Da-Quan; Gao, Li-Xin; Zhou, Guo-Ding

    2006-05-01

    Three kinds of novel corrosion inhibitors, bis-(1,1'-benzotriazoly)-α,ω-succinyldiamide (BSU), bis-(1,1'-benzotriazoly)-α,ω-adipoyldiamide (BAD), and bis-(1,1'-benzotriazoly)-α,ω-azelayldiamide (BAZ) were synthesized and certified by IR and 1H NMR. Their corrosion inhibition effects for copper in 0.5 M H 2SO 4 were evaluated by weight-loss method. It shows that among the three compounds, only BSU behaves better compared with BTA. The inhibition efficiency (IE) increased with increasing BSU concentration to 85.2% at the 5 × 10 -4 M level. Polarization studies showed that BSU suppressed both anodic and cathodic corrosion reactions. The minimum energy conformation of these compounds was obtained by MM2 force field program. The two benzotriazoly moieties in BSU molecule are more parallel than in other compounds. This is benefit to increase the inhibition effects of BSU.

  11. armadillo, bazooka, and stardust are critical for early stages in formation of the zonula adherens and maintenance of the polarized blastoderm epithelium in Drosophila.

    PubMed

    Müller, H A; Wieschaus, E

    1996-07-01

    Cellularization of the Drosophila embryo results in the formation of a cell monolayer with many characteristics of a polarized epithelium. We have used antibodies specific to cellular junctions and nascent plasma membranes to study the formation of the zonula adherens (ZA) in relation to the establishment of basolateral membrane polarity. The same approach was then used as a test system to identify X-linked zygotically active genes required for ZA formation. We show that ZA formation begins during cellularization and that the basolateral membrane domain is established at mid-gastrulation. By creating deficiencies for defined regions of the X chromosome, we have identified genes that are required for the formation of the ZA and the generation of basolateral membrane polarity. We show that embryos mutant for both stardust (sdt) and bazooka (baz) fail to form a ZA. In addition to the failure to establish the ZA, the formation of the monolayered epithelium is disrupted after cellularization, resulting in formation of a multilayered cell sheet by mid-gastrulation. SEM analysis of mutant embryos revealed a conversion of cells exhibiting epithelial characteristics into cells exhibiting mesenchymal characteristics. To investigate how mutations that affect an integral component of the ZA itself influence ZA formation, we examined embryos with reduced maternal and zygotic supply of wild-type Arm protein. These embryos, like embryos mutant for both sdt and baz, exhibit an early disruption of ZA formation. These results suggest that early stages in the assembly of the ZA are critical for the stability of the polarized blastoderm epithelium.

  12. Skeletal maturation in children with Cushing Syndrome is not consistently delayed: the role of corticotropin, obesity, and steroid hormones, and the effect of surgical cure

    PubMed Central

    Lodish, Maya B; Gourgari, Evgenia; Sinaii, Ninet; Hill, Suvimol; Libuit, Laura; Mastroyannis, Spyridon; Keil, Meg; Batista, Dalia L.; Stratakis, Constantine

    2014-01-01

    Objective To measure bone age (BA) in patients with Cushing syndrome (CS) before and 1-year after transsphenoidal surgery or adrenalectomy, and to correlate BA with hormonal and other measurements. Study design Case series at the National Institutes of Health Clinical Center including 93 children with Cushing Disease (CD) (43 F, 12.3±2.9 yr.) and 31 children with ACTH-independent CS (AICS) (22 F, 10.3±4.5 yr.). BA was obtained prior to surgery and at follow-up. Outcome measures were comparison of BA in CD versus AICS; and analysis of the effect of hypercortisolism, insulin excess, BMI and androgen excess on BA. Results 26 out of 124 (21.0%) children with CS had advanced BA, compared with the expected general population prevalence of 2.5% (p<0.0001). Only 4/124 (3.2%) had delayed BA. The majority of patients (76%) had normal bone age. Average BA Z-score (BAZ) was similar in patients with CD and AICS (0.6±1.4 vs. 0.5±1.8, p=0.8865). BMI SDS, and normalized values of DHEA, DHEA-S, androsteonedione, estradiol and testosterone were all significantly higher in the patients with advanced bone age versus those with normal or delayed bone age. 59 cured patients had follow-up BA 1.2±0.3 years after TSS, with decrease of BAZ (1.0±1.6 vs. 0.3±1.4, p<0.0001). Conclusions Contrary to common belief, endogenous CS in children appears to be associated with normal or even advanced skeletal maturation. When present, bone age advancement in CS is related to obesity, insulin resistance and elevated levels of adrenal androgens (and their aromatization). This finding may have significant implications for treatment decisions and final height predictions in these patients. PMID:24412141

  13. Coda Q Attenuation and Source Parameters Analysis in North East India Using Local Earthquakes

    NASA Astrophysics Data System (ADS)

    Mohapatra, A. K.; Mohanty, W. K.; Earthquake Seismology

    2010-12-01

    Alok Kumar Mohapatra1* and William Kumar Mohanty1 *Corresponding author: alokgpiitkgp@gmail.com 1Department of Geology and Geophysics, Indian Institute of Technology, Kharagpur, West Bengal, India. Pin-721302 ABSTRACT In the present study, the quality factor of coda waves (Qc) and the source parameters has been estimated for the Northeastern India, using the digital data of ten local earthquakes from April 2001 to November 2002. Earthquakes with magnitude range from 3.8 to 4.9 have been taken into account. The time domain coda decay method of a single back scattering model is used to calculate frequency dependent values of Coda Q (Qc) where as, the source parameters like seismic moment(Mo), stress drop, source radius(r), radiant energy(Wo),and strain drop are estimated using displacement amplitude spectrum of body wave using Brune's model. The earthquakes with magnitude range 3.8 to 4.9 have been used for estimation Qc at six central frequencies 1.5 Hz, 3.0 Hz, 6.0 Hz, 9.0 Hz, 12.0 Hz, and 18.0 Hz. In the present work, the Qc value of local earthquakes are estimated to understand the attenuation characteristic, source parameters and tectonic activity of the region. Based on a criteria of homogeneity in the geological characteristics and the constrains imposed by the distribution of available events the study region has been classified into three zones such as the Tibetan Plateau Zone (TPZ), Bengal Alluvium and Arakan-Yuma Zone (BAZ), Shillong Plateau Zone (SPZ). It follows the power law Qc= Qo (f/fo)n where, Qo is the quality factor at the reference frequency (1Hz) fo and n is the frequency parameter which varies from region to region. The mean values of Qc reveals a dependence on frequency, varying from 292.9 at 1.5 Hz to 4880.1 at 18 Hz. Average frequency dependent relationship Qc values obtained of the Northeastern India is 198 f 1.035, while this relationship varies from the region to region such as, Tibetan Plateau Zone (TPZ): Qc= 226 f 1.11, Bengal Alluvium

  14. The Role and Place of Cartography in the Development of the Spatial Information Infrastructure

    NASA Astrophysics Data System (ADS)

    Olszewski, Robert

    2012-09-01

    Hundreds of various spatial databases and maps developed using those databases were created in Poland and abroad in the past decade. The majority of them were created ad hoc, in relation to implementation of current demands of particular institutions or organisations. Thus, the side effect |of rapid development of geoinformation was increasing organisational, methodological and conceptual chaos. Adoption and successive implementation of resolutions of the EU INSPIRE Direc- tive, as well as the Polish Act on the Spatial Information Infrastructure was the partial solution of the discussed issues. However, the legal acts of high grade specify only general rules of creation of the geoinformation infrastructure. The development of modem and functional spatial, reference and thematic databases requires detailed determination of a conceptual model of particular databases, the ways of their population, utilisation and processing of data stored in those databases. However, legislative activity is not the most important part of that process; appropriate understanding of sur- rounding geographic reality, resulting in the development of correct cartographic models, implemented in the form of spatial databases, is far more important. Therefore, after the period of rapid technological development and fascination of modem information solutions, the deep methodological reflection is necessary. W minionym dziesięcioleciu powstało, zarówno na świecie, jak i w Polsce, setki różnego rodzaju baz danych przestrzennych i opracowywanych na ich podstawie map. Większość z nich była tworzona ad hoc w związku z realizacją bieżących potrzeb danej instytucji czy organizacji. Skutkiem ubocznym gwałtownego rozwoju geoinformacji stał się zatem narastający chaos organizacyjny, metodyczny i koncepcyjny. Częściowym rozwiązaniem tego problemu stało się przyjęcie i sukcesywne wdrażanie zapisów unijnej dyrektywy INSPIRE i polskiej ustawy o infrastrukturze informacji

  15. Converted Ps amplitude variations on the dipping slab Moho beneath the Kii Peninsula, central Japan

    NASA Astrophysics Data System (ADS)

    Shiomi, K.; Park, J. J.

    2011-12-01

    Receiver function (RF) analysis is a very useful method to detect seismic velocity discontinuities beneath a seismic station. One can estimate the depth of interfaces using the delay time of Ps converted phases in RFs. One can also evaluate elastic properties at an interface from changes of Ps polarity and Ps amplitude. Ps amplitude depends primarily on the impedance contrast at an interface, but the variation of Ps amplitude on back azimuth (BAZ) of the incoming P wave is affected if the interface is dipping and/or anisotropic rock surrounds the interface. Moreover, variation in the incidence angle of incoming P waves also causes variation in Ps amplitude. Shiomi and Park (2009; AGU FM) defined 'standard amplitude' of a converted phase at a dipping interface beneath a station, based on back azimuth dependence of the Ps amplitude. They did not consider ray parameter dependence to the Ps amplitude evaluation, but it affects the accuracy of the standard amplitude estimate. In this study, we check ray parameter dependence, and apply the method to the stations in the Kii Peninsula, central Japan. We select earthquakes with high signal-to-noise ratio observed from October 2000 to August 2010 with magnitudes 6.0 or greater. Checking distribution of BAZs and incidence angles of teleseismic waveforms observed at each station, we confirm that 80% of the selected events are located to the south of stations. Ray parameters of 10% of the events are larger than 0.077. In the case of dipping interface, Ps amplitude variation with BAZ is larger for incoming P waves with larger ray parameters. Since events located in the west or northeast of stations are fewer than other directions, the contribution of events with large ray parameter is not small in these directions. These directions correspond to the dipping direction of the subducting Philippine Sea slab, thus the Ps amplitudes tend to become large. This means the Ps amplitude may be overestimated when we do not take ray

  16. L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity.

    PubMed

    Geiger, Roger; Rieckmann, Jan C; Wolf, Tobias; Basso, Camilla; Feng, Yuehan; Fuhrer, Tobias; Kogadeeva, Maria; Picotti, Paola; Meissner, Felix; Mann, Matthias; Zamboni, Nicola; Sallusto, Federica; Lanzavecchia, Antonio

    2016-10-20

    Metabolic activity is intimately linked to T cell fate and function. Using high-resolution mass spectrometry, we generated dynamic metabolome and proteome profiles of human primary naive T cells following activation. We discovered critical changes in the arginine metabolism that led to a drop in intracellular L-arginine concentration. Elevating L-arginine levels induced global metabolic changes including a shift from glycolysis to oxidative phosphorylation in activated T cells and promoted the generation of central memory-like cells endowed with higher survival capacity and, in a mouse model, anti-tumor activity. Proteome-wide probing of structural alterations, validated by the analysis of knockout T cell clones, identified three transcriptional regulators (BAZ1B, PSIP1, and TSN) that sensed L-arginine levels and promoted T cell survival. Thus, intracellular L-arginine concentrations directly impact the metabolic fitness and survival capacity of T cells that are crucial for anti-tumor responses.

  17. Space Age Archaeology

    NASA Technical Reports Server (NTRS)

    1988-01-01

    In 1985, the Egyptian Antiques Organization (EAO) asked Dr. Farouk El-Baz whether it would be possible to examine and sample the second chamber of the subterranean chamber carved in the bedrock near the Great Pyramid of Khufu in Giza, Egypt, without admitting people, air or contaminants. He felt it could by applying space technology to the task. The initial contact led to a two year project which he organized and headed a team, co-sponsored by EAO and the National Geographic Society (NGS), to apply space technology in an effort to examine and photograph the Giza Chamber. The NGS photographic division modified and tested a remotely controlled video system and a 35-millimeter camera, and developed a lighting system that would not elevate the chamber temperature. Still needed was a drill to cut through the limestone cap without using lubricants or cooling fluids that might contaminate the chamber, and an airlock that would admit the drill shaft and photo equipment but not the air. Bob Moores from Black & Decker Corporation tailored a new drill to the Giza exploration. The drill bit broke through into the chamber at a depth of 63 inches, a stainless steel tube was lowered through the airlock to take samples of the chamber air at several levels. The video camera sent images from the chamber revealing that there was a disassembled royal boat that had been there.

  18. Molecular Basis of Histone Tail Recognition by Human TIP5 PHD Finger and Bromodomain of the Chromatin Remodeling Complex NoRC

    PubMed Central

    Tallant, Cynthia; Valentini, Erica; Fedorov, Oleg; Overvoorde, Lois; Ferguson, Fleur M.; Filippakopoulos, Panagis; Svergun, Dmitri I.; Knapp, Stefan; Ciulli, Alessio

    2015-01-01

    Summary Binding of the chromatin remodeling complex NoRC to RNA complementary to the rDNA promoter mediates transcriptional repression. TIP5, the largest subunit of NoRC, is involved in recruitment to rDNA by interactions with promoter-bound TTF-I, pRNA, and acetylation of H4K16. TIP5 domains that recognize posttranslational modifications on histones are essential for recruitment of NoRC to chromatin, but how these reader modules recognize site-specific histone tails has remained elusive. Here, we report crystal structures of PHD zinc finger and bromodomains from human TIP5 and BAZ2B in free form and bound to H3 and/or H4 histones. PHD finger functions as an independent structural module in recognizing unmodified H3 histone tails, and the bromodomain prefers H3 and H4 acetylation marks followed by a key basic residue, KacXXR. Further low-resolution analyses of PHD-bromodomain modules provide molecular insights into their trans histone tail recognition, required for nucleosome recruitment and transcriptional repression of the NoRC complex. PMID:25533489

  19. Pins is not required for spindle orientation in the Drosophila wing disc

    PubMed Central

    Lovegrove, Holly E.; Kujawiak, Izabela; Dawney, Nicole S.; Zhu, Jinwei; Cooper, Samantha; Zhang, Rongguang

    2016-01-01

    In animal cells, mitotic spindles are oriented by the dynein/dynactin motor complex, which exerts a pulling force on astral microtubules. Dynein/dynactin localization depends on Mud/NUMA, which is typically recruited to the cortex by Pins/LGN. In Drosophila neuroblasts, the Inscuteable/Baz/Par-6/aPKC complex recruits Pins apically to induce vertical spindle orientation, whereas in epithelial cells Dlg recruits Pins laterally to orient the spindle horizontally. Here we investigate division orientation in the Drosophila imaginal wing disc epithelium. Live imaging reveals that spindle angles vary widely during prometaphase and metaphase, and therefore do not reliably predict division orientation. This finding prompted us to re-examine mutants that have been reported to disrupt division orientation in this tissue. Loss of Mud misorients divisions, but Inscuteable expression and aPKC, dlg and pins mutants have no effect. Furthermore, Mud localizes to the apical-lateral cortex of the wing epithelium independently of both Pins and cell cycle stage. Thus, Pins is not required in the wing disc because there are parallel mechanisms for Mud localization and hence spindle orientation, making it a more robust system than in other epithelia. PMID:27287805

  20. Identification of a Sudden Cardiac Death Susceptibility Locus at 2q24.2 through Genome-Wide Association in European Ancestry Individuals

    PubMed Central

    Reinier, Kyndaron; Teodorescu, Carmen; Uy-Evanado, Audrey; Carter-Monroe, Naima; Kaikkonen, Kari S.; Kortelainen, Marja-Leena; Boucher, Gabrielle; Lagacé, Caroline; Moes, Anna; Zhao, XiaoQing; Kolodgie, Frank; Rivadeneira, Fernando; Hofman, Albert; Witteman, Jacqueline C. M.; Uitterlinden, André G.; Marsman, Roos F.; Pazoki, Raha; Bardai, Abdennasser; Koster, Rudolph W.; Dehghan, Abbas; Hwang, Shih-Jen; Bhatnagar, Pallav; Post, Wendy; Hilton, Gina; Prineas, Ronald J.; Li, Man; Köttgen, Anna; Ehret, Georg; Boerwinkle, Eric; Coresh, Josef; Kao, W. H. Linda; Psaty, Bruce M.; Tomaselli, Gordon F.; Sotoodehnia, Nona; Siscovick, David S.; Burke, Greg L.; Marbán, Eduardo; Spooner, Peter M.; Cupples, L. Adrienne; Jui, Jonathan; Gunson, Karen; Kesäniemi, Y. Antero; Wilde, Arthur A. M.; Tardif, Jean-Claude; O'Donnell, Christopher J.; Bezzina, Connie R.; Virmani, Renu; Stricker, Bruno H. C. h.; Tan, Hanno L.; Albert, Christine M.; Chakravarti, Aravinda; Rioux, John D.; Huikuri, Heikki V.; Chugh, Sumeet S.

    2011-01-01

    Sudden cardiac death (SCD) continues to be one of the leading causes of mortality worldwide, with an annual incidence estimated at 250,000–300,000 in the United States and with the vast majority occurring in the setting of coronary disease. We performed a genome-wide association meta-analysis in 1,283 SCD cases and >20,000 control individuals of European ancestry from 5 studies, with follow-up genotyping in up to 3,119 SCD cases and 11,146 controls from 11 European ancestry studies, and identify the BAZ2B locus as associated with SCD (P = 1.8×10−10). The risk allele, while ancestral, has a frequency of ∼1.4%, suggesting strong negative selection and increases risk for SCD by 1.92–fold per allele (95% CI 1.57–2.34). We also tested the role of 49 SNPs previously implicated in modulating electrocardiographic traits (QRS, QT, and RR intervals). Consistent with epidemiological studies showing increased risk of SCD with prolonged QRS/QT intervals, the interval-prolonging alleles are in aggregate associated with increased risk for SCD (P = 0.006). PMID:21738491

  1. High-density Genotyping of Immune Loci in Kawasaki Disease and IVIG Treatment Response in European-American Case-parent Trio Study

    PubMed Central

    Shendre, Aditi; Wiener, Howard W.; Zhi, Degui; Vazquez, Ana I; Portman, Michael A.; Shrestha, Sadeep

    2014-01-01

    Kawasaki disease (KD) is a diffuse and acute small-vessel vasculitis observed in children and has genetic and autoimmune components. We genotyped 112 case-parent trios of European decent (confirmed by AIMS) using the ImmunoChip array and performed association analyses with susceptibility to KD and IVIG non-response. KD susceptibility was assessed using the transmission disequilibrium test whereas IVIG non-response was evaluated using multivariable logistic regression analysis. We replicated SNPs in three gene regions (FCGR, CD40/CDH22, and HLA-DQB2/HLA-DOB) that have been previously associated with KD and provide support to other findings of several novel SNPs in genes with potential pathway in KD pathogenesis. SNP rs838143 in the 3′ UTR of FUT1 gene (2.7×10-5) and rs9847915 in the intergenic region of LOC730109 ∣ BRD7P2 (6.81×10-7) were the top hits for KD susceptibility in additive and dominant models, respectively. The top hits for IVIG responsiveness were rs1200332 in the intergenic region of BAZ1A ∣ C14orf19 (1.4×10-4) and rs4889606 in the intron of the STX1B gene (6.95×10-5) in additive and dominant models, respectively. Our study suggests that genes and biological pathways involved in autoimmune diseases play an important role in the pathogenesis of KD and IVIG response mechanism. PMID:25101798

  2. Pins is not required for spindle orientation in the Drosophila wing disc.

    PubMed

    Bergstralh, Dan T; Lovegrove, Holly E; Kujawiak, Izabela; Dawney, Nicole S; Zhu, Jinwei; Cooper, Samantha; Zhang, Rongguang; St Johnston, Daniel

    2016-07-15

    In animal cells, mitotic spindles are oriented by the dynein/dynactin motor complex, which exerts a pulling force on astral microtubules. Dynein/dynactin localization depends on Mud/NUMA, which is typically recruited to the cortex by Pins/LGN. In Drosophila neuroblasts, the Inscuteable/Baz/Par-6/aPKC complex recruits Pins apically to induce vertical spindle orientation, whereas in epithelial cells Dlg recruits Pins laterally to orient the spindle horizontally. Here we investigate division orientation in the Drosophila imaginal wing disc epithelium. Live imaging reveals that spindle angles vary widely during prometaphase and metaphase, and therefore do not reliably predict division orientation. This finding prompted us to re-examine mutants that have been reported to disrupt division orientation in this tissue. Loss of Mud misorients divisions, but Inscuteable expression and aPKC, dlg and pins mutants have no effect. Furthermore, Mud localizes to the apical-lateral cortex of the wing epithelium independently of both Pins and cell cycle stage. Thus, Pins is not required in the wing disc because there are parallel mechanisms for Mud localization and hence spindle orientation, making it a more robust system than in other epithelia.

  3. The extended AT-hook is a novel RNA binding motif

    PubMed Central

    Filarsky, Michael; Zillner, Karina; Araya, Ingrid; Villar-Garea, Ana; Merkl, Rainer; Längst, Gernot; Németh, Attila

    2015-01-01

    The AT-hook has been defined as a DNA binding peptide motif that contains a glycine-arginine-proline (G-R-P) tripeptide core flanked by basic amino acids. Recent reports documented variations in the sequence of AT-hooks and revealed RNA binding activity of some canonical AT-hooks, suggesting a higher structural and functional variability of this protein domain than previously anticipated. Here we describe the discovery and characterization of the extended AT-hook peptide motif (eAT-hook), in which basic amino acids appear symmetrical mainly at a distance of 12–15 amino acids from the G-R-P core. We identified 80 human and 60 mouse eAT-hook proteins and biochemically characterized the eAT-hooks of Tip5/BAZ2A, PTOV1 and GPBP1. Microscale thermophoresis and electrophoretic mobility shift assays reveal the nucleic acid binding features of this peptide motif, and show that eAT-hooks bind RNA with one order of magnitude higher affinity than DNA. In addition, cellular localization studies suggest a role for the N-terminal eAT-hook of PTOV1 in nucleocytoplasmic shuttling. In summary, our findings classify the eAT-hook as a novel nucleic acid binding motif, which potentially mediates various RNA-dependent cellular processes. PMID:26156556

  4. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations

    PubMed Central

    Köttgen, Anna; Albrecht, Eva; Teumer, Alexander; Vitart, Veronique; Krumsiek, Jan; Hundertmark, Claudia; Pistis, Giorgio; Ruggiero, Daniela; O’Seaghdha, Conall M; Haller, Toomas; Yang, Qiong; Tanaka, Toshiko; Johnson, Andrew D; Kutalik, Zoltán; Smith, Albert V; Shi, Julia; Struchalin, Maksim; Middelberg, Rita P S; Brown, Morris J; Gaffo, Angelo L; Pirastu, Nicola; Li, Guo; Hayward, Caroline; Zemunik, Tatijana; Huffman, Jennifer; Yengo, Loic; Zhao, Jing Hua; Demirkan, Ayse; Feitosa, Mary F; Liu, Xuan; Malerba, Giovanni; Lopez, Lorna M; van der Harst, Pim; Li, Xinzhong; Kleber, Marcus E; Hicks, Andrew A; Nolte, Ilja M; Johansson, Asa; Murgia, Federico; Wild, Sarah H; Bakker, Stephan J L; Peden, John F; Dehghan, Abbas; Steri, Maristella; Tenesa, Albert; Lagou, Vasiliki; Salo, Perttu; Mangino, Massimo; Rose, Lynda M; Lehtimäki, Terho; Woodward, Owen M; Okada, Yukinori; Tin, Adrienne; Müller, Christian; Oldmeadow, Christopher; Putku, Margus; Czamara, Darina; Kraft, Peter; Frogheri, Laura; Thun, Gian Andri; Grotevendt, Anne; Gislason, Gauti Kjartan; Harris, Tamara B; Launer, Lenore J; McArdle, Patrick; Shuldiner, Alan R; Boerwinkle, Eric; Coresh, Josef; Schmidt, Helena; Schallert, Michael; Martin, Nicholas G; Montgomery, Grant W; Kubo, Michiaki; Nakamura, Yusuke; Tanaka, Toshihiro; Munroe, Patricia B; Samani, Nilesh J; Jacobs, David R; Liu, Kiang; D’Adamo, Pio; Ulivi, Sheila; Rotter, Jerome I; Psaty, Bruce M; Vollenweider, Peter; Waeber, Gerard; Campbell, Susan; Devuyst, Olivier; Navarro, Pau; Kolcic, Ivana; Hastie, Nicholas; Balkau, Beverley; Froguel, Philippe; Esko, Tõnu; Salumets, Andres; Khaw, Kay Tee; Langenberg, Claudia; Wareham, Nicholas J; Isaacs, Aaron; Kraja, Aldi; Zhang, Qunyuan; Wild, Philipp S; Scott, Rodney J; Holliday, Elizabeth G; Org, Elin; Viigimaa, Margus; Bandinelli, Stefania; Metter, Jeffrey E; Lupo, Antonio; Trabetti, Elisabetta; Sorice, Rossella; Döring, Angela; Lattka, Eva; Strauch, Konstantin; Theis, Fabian; Waldenberger, Melanie; Wichmann, H-Erich; Davies, Gail; Gow, Alan J; Bruinenberg, Marcel; Study, LifeLines Cohort; Stolk, Ronald P; Kooner, Jaspal S; Zhang, Weihua; Winkelmann, Bernhard R; Boehm, Bernhard O; Lucae, Susanne; Penninx, Brenda W; Smit, Johannes H; Curhan, Gary; Mudgal, Poorva; Plenge, Robert M; Portas, Laura; Persico, Ivana; Kirin, Mirna; Wilson, James F; Leach, Irene Mateo; van Gilst, Wiek H; Goel, Anuj; Ongen, Halit; Hofman, Albert; Rivadeneira, Fernando; Uitterlinden, Andre G; Imboden, Medea; von Eckardstein, Arnold; Cucca, Francesco; Nagaraja, Ramaiah; Piras, Maria Grazia; Nauck, Matthias; Schurmann, Claudia; Budde, Kathrin; Ernst, Florian; Farrington, Susan M; Theodoratou, Evropi; Prokopenko, Inga; Stumvoll, Michael; Jula, Antti; Perola, Markus; Salomaa, Veikko; Shin, So-Youn; Spector, Tim D; Sala, Cinzia; Ridker, Paul M; Kähönen, Mika; Viikari, Jorma; Hengstenberg, Christian; Nelson, Christopher P; Consortium, CARDIoGRAM; Consortium, DIAGRAM; Consortium, ICBP; Consortium, MAGIC; Meschia, James F; Nalls, Michael A; Sharma, Pankaj; Singleton, Andrew B; Kamatani, Naoyuki; Zeller, Tanja; Burnier, Michel; Attia, John; Laan, Maris; Klopp, Norman; Hillege, Hans L; Kloiber, Stefan; Choi, Hyon; Pirastu, Mario; Tore, Silvia; Probst-Hensch, Nicole M; Völzke, Henry; Gudnason, Vilmundur; Parsa, Afshin; Schmidt, Reinhold; Whitfield, John B; Fornage, Myriam; Gasparini, Paolo; Siscovick, David S; Polašek, Ozren; Campbell, Harry; Rudan, Igor; Bouatia-Naji, Nabila; Metspalu, Andres; Loos, Ruth J F; van Duijn, Cornelia M; Borecki, Ingrid B; Ferrucci, Luigi; Gambaro, Giovanni; Deary, Ian J; Wolffenbuttel, Bruce H R; Chambers, John C; März, Winfried; Pramstaller, Peter P; Snieder, Harold; Gyllensten, Ulf; Wright, Alan F; Navis, Gerjan; Watkins, Hugh; Witteman, Jacqueline C M; Sanna, Serena; Schipf, Sabine; Dunlop, Malcolm G; Tönjes, Anke; Ripatti, Samuli; Soranzo, Nicole; Toniolo, Daniela; Chasman, Daniel I; Raitakari, Olli; Kao, W H Linda; Ciullo, Marina; Fox, Caroline S; Caulfield, Mark; Bochud, Murielle; Gieger, Christian

    2013-01-01

    Elevated serum urate concentrations can cause gout, a prevalent and painful inflammatory arthritis. By combining data from >140,000 individuals of European ancestry within the Global Urate Genetics Consortium (GUGC), we identified and replicated 28 genome-wide significant loci in association with serum urate concentrations (18 new regions in or near TRIM46, INHBB, SFMBT1, TMEM171, VEGFA, BAZ1B, PRKAG2, STC1, HNF4G, A1CF, ATXN2, UBE2Q2, IGF1R, NFAT5, MAF, HLF, ACVR1B-ACVRL1 and B3GNT4). Associations for many of the loci were of similar magnitude in individuals of non-European ancestry. We further characterized these loci for associations with gout, transcript expression and the fractional excretion of urate. Network analyses implicate the inhibins-activins signaling pathways and glucose metabolism in systemic urate control. New candidate genes for serum urate concentration highlight the importance of metabolic control of urate production and excretion, which may have implications for the treatment and prevention of gout. PMID:23263486

  5. Pins is not required for spindle orientation in the Drosophila wing disc.

    PubMed

    Bergstralh, Dan T; Lovegrove, Holly E; Kujawiak, Izabela; Dawney, Nicole S; Zhu, Jinwei; Cooper, Samantha; Zhang, Rongguang; St Johnston, Daniel

    2016-07-15

    In animal cells, mitotic spindles are oriented by the dynein/dynactin motor complex, which exerts a pulling force on astral microtubules. Dynein/dynactin localization depends on Mud/NUMA, which is typically recruited to the cortex by Pins/LGN. In Drosophila neuroblasts, the Inscuteable/Baz/Par-6/aPKC complex recruits Pins apically to induce vertical spindle orientation, whereas in epithelial cells Dlg recruits Pins laterally to orient the spindle horizontally. Here we investigate division orientation in the Drosophila imaginal wing disc epithelium. Live imaging reveals that spindle angles vary widely during prometaphase and metaphase, and therefore do not reliably predict division orientation. This finding prompted us to re-examine mutants that have been reported to disrupt division orientation in this tissue. Loss of Mud misorients divisions, but Inscuteable expression and aPKC, dlg and pins mutants have no effect. Furthermore, Mud localizes to the apical-lateral cortex of the wing epithelium independently of both Pins and cell cycle stage. Thus, Pins is not required in the wing disc because there are parallel mechanisms for Mud localization and hence spindle orientation, making it a more robust system than in other epithelia. PMID:27287805

  6. Waist circumference as a marker for screening nonalcoholic fatty liver disease in obese adolescents

    PubMed Central

    Clemente, Ana Paula Grotti; Dal Molin, Bárbara; de Carvalho-Ferreira, Joana Pereira; Campos, Raquel Munhoz da Silveira; Ganen, Aline de Piano; Tock, Lian; de Mello, Marco Túlio; Dâmaso, Ana Raimunda

    2016-01-01

    Abstract Objective: To assess the relationship between the degree of waist circumference (WC) and nonalcoholic fatty liver disease (NAFLD) in obese adolescents of both genders, analyzed according to quartiles of WC. Methods: Cross-sectional study that involved 247 obese adolescents aged 12–19 years. Mean values of the nutritional parameters and serum analyses were compared with the groups using the independent t-test. Pearson correlation coefficient was used to determine the relationship of the parameters studied. Chi-square test for trend was used to determine the relationship between the prevalence of the NAFLD and WC quartile by gender. Results: NAFLD were presented in 60% of the study participants. Obese adolescents in the 3rd and 4th quartiles of WC presented higher prevalence of NAFLD when compared with that in the 1st quartile in both genders. The NAFLD patients had significantly higher values for body weight, BMI (body mass index), BAZ-score (BMI-for-age z-scores), total fat (% and kg), WC, visceral fat, insulin, insulin resistance index (HOMA-IR), aspartate aminotransferase and alanine aminotransferase, when compared with non-NAFLD obese adolescents. Conclusions: In conclusion, the results presented here suggest that an increase in WC can reliably predict the risk of NAFLD in obese adolescents. This is a low cost and easy-to-use tool that can help in screening in adolescents. PMID:26830602

  7. The extended AT-hook is a novel RNA binding motif.

    PubMed

    Filarsky, Michael; Zillner, Karina; Araya, Ingrid; Villar-Garea, Ana; Merkl, Rainer; Längst, Gernot; Németh, Attila

    2015-01-01

    The AT-hook has been defined as a DNA binding peptide motif that contains a glycine-arginine-proline (G-R-P) tripeptide core flanked by basic amino acids. Recent reports documented variations in the sequence of AT-hooks and revealed RNA binding activity of some canonical AT-hooks, suggesting a higher structural and functional variability of this protein domain than previously anticipated. Here we describe the discovery and characterization of the extended AT-hook peptide motif (eAT-hook), in which basic amino acids appear symmetrical mainly at a distance of 12-15 amino acids from the G-R-P core. We identified 80 human and 60 mouse eAT-hook proteins and biochemically characterized the eAT-hooks of Tip5/BAZ2A, PTOV1 and GPBP1. Microscale thermophoresis and electrophoretic mobility shift assays reveal the nucleic acid binding features of this peptide motif, and show that eAT-hooks bind RNA with one order of magnitude higher affinity than DNA. In addition, cellular localization studies suggest a role for the N-terminal eAT-hook of PTOV1 in nucleocytoplasmic shuttling. In summary, our findings classify the eAT-hook as a novel nucleic acid binding motif, which potentially mediates various RNA-dependent cellular processes.

  8. Evidence of young volcanic vents in the lunar maria

    NASA Astrophysics Data System (ADS)

    Braden, S.; Robinson, M. S.; Stopar, J. D.

    2013-12-01

    from broad areas of mare basalt flows. Changes in extrusion rate and temperature commonly occur at vents, which could explain the IMPs' unique morphology. Furthermore, IMPs are often spatially associated with volcanic features such as mare domes (e.g., Cauchy 5), collapse calderas (e.g., Hyginus crater), and large pyroclastic deposits (e.g., Mare Vaporum). Multispectral analysis on a subset of the largest IMPs using combined Clementine UV-VIS data (950/750 nm ratio) and LROC Wide Angle Camera images (320/415 nm ratio) show that the uneven unit is consistent with a mare basalt composition. The multispectral data also suggest the presence of pyroclastic material in the area directly surrounding some of the IMPs, which is consistent with a vent hypothesis. Thus, the morphology, composition, and distribution of IMPs imply that lunar volcanic activity may be much younger than generally recognized. References: [1] Whitaker E. (1972) NASA SP-289. [2] Schultz P. H. (1976) Moon Morphology, 626 pp., Univ. of Texas. [3] Stooke P. J. (2012) LPSC 43, abst 1011. [4] Braden S. E. et al. (2013) LPSC 44, abst. 2843. [5] El-Baz, F. (1973) NASA SP-330. [6] Strain P. L. and El-Baz F. (1980) PLPSC 11, 2437-2446. [7] Schultz P. H. (2006) Nature, 444, 184-186. [8] Staid M. et al. (2011) LPSC 42, abst. 2499. [9] Garry W. B. et al. (2012) JGR, 117, E00H31. [10] Robinson M. S. et al. (2010) LPSC 41, abst. 2592.

  9. The Use of Digital Terrain Model in the Study of Distribution of Cultural Landscape Elements based on the Example of Silesia Beskid

    NASA Astrophysics Data System (ADS)

    Sobala, Michał; Czajka, Barbara

    2012-01-01

    Digital Terrain Model (DTM) and maps based on it, are very valuable tool in investigations of distribution of cultural landscape elements. Connection DTM with a digital land cover maps, clearly illustrate factors determinate location of various landscape elements. The paper presents the applicability of Digital Terrain Model to detect the influence of topographic attributes on landscape elements distribution and to determinate the landscape's structure in the different altitudinal zones. Presented results, are the effect of the first phase of cultural landscape elements distribution research and they are starting point to look for other factors which could effect on structure of the landscape. Numeryczny model terenu i jego mapy pochodne stanowią bardzo cenne narzędzie badania rozmieszczenia elementów krajobrazu kulturowego. W połączeniu z cyfrową mapą pokrycia terenu, pozwalają na czytelne zobrazowanie czynników warunkujących lokalizację poszczególnych elementów krajobrazu oraz określenie ich znaczenia. W pracy przedstawiono możliwości zastosowania numerycznego modelu terenu do określenia wpływu wybranych atrybutów topograficznych na rozmieszczenie elementów krajobrazu kulturowego oraz do określenia jego struktury w poszczególnych strefach wysokościowych. Zwrócono uwagę, iż uzyskane za pomocą numerycznego modelu terenu wyniki są efektem jednego z etapów badania uwarunkowań rozmieszczenia elementów krajobrazu kulturowego i stanowią bazę wyjściową do poszukiwania innych czynników, które mogły wpływać na jego strukturę.

  10. Effect of silicate minerals (zeolite, bentonite, kaolin, granite) on in vitro fermentation of amorphous cellulose, meadow hay, wheat straw and barley.

    PubMed

    Váradyová, Zora; Baran, Miroslav; Siroka, Peter; Styriaková, Iveta

    2003-01-01

    The objective of the present experiment was to determine the effects of addition of silicate minerals, zeolite (Z), bentonite (B), kaolin (K), granite (G) on the rumen fermentation parameters, total gas, methane, total and individual volatile fatty acids (VFA) and hydrogen recovery in rumen fluid inoculum from sheep. Different materials (0.25 g) meadow hay (MH), wheat straw (WS), barley (BA) and amorphous cellulose (AC) were used as substrates. Silicate minerals (0.1 g) were added to the fermentation bottles containing substrates and rumen fluid inoculum and incubated for 72 h in vitro. The gas production technique simulates fermentation in the rumen was used to determine fermentation parameters. The total gas production was significantly higher compared to control for MH plus B (MHB), MH plus G (MHG), WS plus Z (WSZ), WS plus B (WSB), WS plus K (WSK), WS plus G (WSG), AC plus B (ACB), AC plus G (ACG), BA plus Z (BAZ), BA plus B (BAB), BA plus K (BAK), BA plus granite (BAG). Significant differences of the methane production were found between the controls, WSG, BAB and BAK. The total VFA concentration was increased in ACG (83.1 mM). The acetate: propionate (A:P) ratio of the control and additives ranged between 3.1 and 3.6 for MH, 2.7 and 3.5 for WS, 1.6 and 1.8 for AC and 2.3 and 2.9 for BA. It was concluded that the silicate minerals had no appreciable effect on the methane production, however, they support the microbial metabolism by influencing (bentonite, granite) and slightly influencing (zeolite, kaolin) the rumen fermentation.

  11. [Nutritional status of preschool children attending the Chilean National Nursery Schools Council Programs (JUNJI): assessment of the agreement among anthropometric indicators of obesity and central obesity].

    PubMed

    Gutiérez-Gómez, Yareni; Kain, Juliana; Uauy, Ricardo; Galván, Marcos; Corvalán, Camila

    2009-03-01

    Historically, the anthropometric assessment of nutritional welfare programs has been targeted to assess nutritional deficiencies based on weight-to-age and height-to-age indicators. Recently, given the increase on childhood obesity, it has been also recommended the measurement of indicators of obesity (i.e., weight-to-height) and central obesity (i.e., waist circumference). However, the agreement of these indicators in preschool children is unclear. The aims of this study were: (1) assess the nutritional status of children attending the Chilean National Nursery Schools Council Program (JUNJI); (2) assess the agreement between general and central obesity anthropometric measurements in these children. In 574 girls and 580 boys, 3.0 to 5.9 years old, we measured: weight, height, waist and hip circumference, and five skinfolds. We used the WHO 2006 growth standards to estimate Z-scores. We defined general obesity as WHZ or BAZ= 2, and central obesity as waist circumference > or =90 percentile of NHANES III. The participants were on average slightly shorter but considerably heavier and obese than the reference populations. Prevalence of general obesity was close to 16% with both indicators while prevalence of central obesity reached 15%. There was good agreement among general obesity indicators and central obesity indicators (Kappa = 0.6-0.7). In summary, we found a high prevalence of obesity and central obesity among Chilean preschool children beneficiaries of a welfare program. At this age, there was a good agreement among general obesity indicators and central obesity indicators. These results suggest that waist circumferences measurements should not be incorporated to the program.

  12. TEMEL ETİK KURAMLAR AÇISINDAN ADALET ve SAĞLIK HAKKI KAVRAMLARININ DEĞERLENDİRMESİ1,2

    PubMed Central

    Ekmekçi, Perihan Elif; Arda, Berna

    2015-01-01

    Sağlık hakkı temel bir insan hakkıdır. Ancak günümüzde sağlık hakkının hayata geçmesi, sağlık sunumunda gereksinim duyulan kaynakların kısıtlı olması nedeniyle engeller ile karşılaşmaktadır. Ayrıca tıp alanındaki hızlı teknolojik ilerlemeler, tanı ve tedavi imkânlarının her geçen gün gelişmesine yol açmaktadır. Bu durum, sağlık hizmetlerinin sunumunu dağıtıcı adaletin bir süjesi haline getirmektedir. Adalet kavramının tanımlanabilmesi için öncelikle, birey ya da toplulukların bir şeye ilişkin hak talebinde bulunmalarının koşullarını tanımlanmalı daha sonra hak edilenin kim tarafından ve nasıl verileceğinin belirlenmelidir. Etik kuramlar, etik açıdan doğru eyleyebilmek için hangi dayanak noktalarından yola çıkarak hangi değerleri önceleyerek karar vermek gerektiği konusunda kendi paradigmalarını oluşturmuşlardır. Adalet ve sağlık hakkı gibi temel kavramlar, temel etik kuramlar tarafından, o kuramın bağlamı içinde değerlendirilmekte ve anlam kazanmaktadır. Sağlık hakkı bazı etik kuramlar tarafından insan varlığının doğal bir bileşeni olarak tanımlanırken, bazı etik kuramlar tarafından bağlamsal olarak kabul edilmekte bazıları tarafından ise reddedilmekte, adalet kavramı ve bağlantılı olarak adaletin materyal ve formal ilkeleri gibi kavramların içerikleri ve taşıdıkları değerler içinden bakılan etik kuramın paradigmasına bağlı olarak farklıklar içermektedir. Etik kuramların paradigmaları sadece kavramların tanımlanmasında değil, aynı zamanda pratik uygulamalarda da farklı yaklaşımları gerektirmektedir. Bu çalışmada, erdem etiği, faydacı etik kuram, ödev etiği, liberal etik kuram ve kommuniteryan etik kuramın adalet ve sağlık hakkını nasıl kavramsallaştırdıklarını ortaya konmaktır. Bu amaçla öncelikle her bir etik kuramın genel çerçevesi tanımlanmış ve bu çerçevenin çizdiği teorik paradigma i

  13. A Reliable Method of Completing and Compensating the Results of Measurements of Flow Parameters in a Network of Headings / O Pewnej Metodzie Uzupełniania I Wyrównywania Wyników Pomiarów Parametrów Przepływu W Sieci Wyrobisk Górniczych

    NASA Astrophysics Data System (ADS)

    Dziurzyński, Wacław; Krach, Andrzej; Pałka, Teresa

    2015-03-01

    pressure values on the basis of the available results of measurements carried out in adjacent nodes, as well as the pressure value calculated on the basis of the heading geometry and the given volumetric flow rate. The present paper discusses the methodology of compensating and balancing the volumetric air flow rates within a network of headings (Chapter 2) and the methodology of determining pressure values (Chapter 3) in the nodes of the network. The developed calculation algorithms - verified by means of sample calculations performed for a selected area of a mine ventilation network - were introduced into the VentGraph software system. The calculation results were presented in tabular form. The Summary section discusses the minuses and pluses of the adopted methodology. Podstawą prognozy procesu przewietrzania jest posługiwanie się zwalidowanym programem komputerowym (Dziurzyński i in., 2011; Pritchard, 2010) oraz poprawnie przygotowaną bazą danych zawierającą parametry opisujące przepływ powietrza i gazów, zgodną z przyjętym modelem matematycznym w programie komputerowym VentGraph (Dziurzyński, 2002). Dysponując bazą danych pomiarowych oraz przyjętym do obliczeń komputerowych i symulacji procesu przewietrzania modelem matematycznym przystępujemy do opracowania modelu numerycznego dla wybranej sieci wyrobisk kopalni. Przygotowanie modelu numerycznego sieci wentylacyjnej danej kopalni wymaga dostarczenia zestawu danych dotyczących struktury sieci i własności fizycznych jej elementów, tj. wyrobisk, wentylatorów, tam, a przy symulacji pożaru dodatkowo wymagane jest podanie parametrów opisujących ognisko pożaru oraz własności skał górotworu. Obecna praktyka postępowania polega na tym, że wykonuje się ręczne pomiary wentylacyjne w wyrobiskach górniczych, a uzyskane wyniki stanowią podstawę do wyznaczenia parametrów fizycznych takich jak: opór aerodynamiczny wyrobiska, gęstość przepływającego powietrza i

  14. Pleiotropic genes for metabolic syndrome and inflammation.

    PubMed

    Kraja, Aldi T; Chasman, Daniel I; North, Kari E; Reiner, Alexander P; Yanek, Lisa R; Kilpeläinen, Tuomas O; Smith, Jennifer A; Dehghan, Abbas; Dupuis, Josée; Johnson, Andrew D; Feitosa, Mary F; Tekola-Ayele, Fasil; Chu, Audrey Y; Nolte, Ilja M; Dastani, Zari; Morris, Andrew; Pendergrass, Sarah A; Sun, Yan V; Ritchie, Marylyn D; Vaez, Ahmad; Lin, Honghuang; Ligthart, Symen; Marullo, Letizia; Rohde, Rebecca; Shao, Yaming; Ziegler, Mark A; Im, Hae Kyung; Schnabel, Renate B; Jørgensen, Torben; Jørgensen, Marit E; Hansen, Torben; Pedersen, Oluf; Stolk, Ronald P; Snieder, Harold; Hofman, Albert; Uitterlinden, Andre G; Franco, Oscar H; Ikram, M Arfan; Richards, J Brent; Rotimi, Charles; Wilson, James G; Lange, Leslie; Ganesh, Santhi K; Nalls, Mike; Rasmussen-Torvik, Laura J; Pankow, James S; Coresh, Josef; Tang, Weihong; Linda Kao, W H; Boerwinkle, Eric; Morrison, Alanna C; Ridker, Paul M; Becker, Diane M; Rotter, Jerome I; Kardia, Sharon L R; Loos, Ruth J F; Larson, Martin G; Hsu, Yi-Hsiang; Province, Michael A; Tracy, Russell; Voight, Benjamin F; Vaidya, Dhananjay; O'Donnell, Christopher J; Benjamin, Emelia J; Alizadeh, Behrooz Z; Prokopenko, Inga; Meigs, James B; Borecki, Ingrid B

    2014-08-01

    Metabolic syndrome (MetS) has become a health and financial burden worldwide. The MetS definition captures clustering of risk factors that predict higher risk for diabetes mellitus and cardiovascular disease. Our study hypothesis is that additional to genes influencing individual MetS risk factors, genetic variants exist that influence MetS and inflammatory markers forming a predisposing MetS genetic network. To test this hypothesis a staged approach was undertaken. (a) We analyzed 17 metabolic and inflammatory traits in more than 85,500 participants from 14 large epidemiological studies within the Cross Consortia Pleiotropy Group. Individuals classified with MetS (NCEP definition), versus those without, showed on average significantly different levels for most inflammatory markers studied. (b) Paired average correlations between 8 metabolic traits and 9 inflammatory markers from the same studies as above, estimated with two methods, and factor analyses on large simulated data, helped in identifying 8 combinations of traits for follow-up in meta-analyses, out of 130,305 possible combinations between metabolic traits and inflammatory markers studied. (c) We performed correlated meta-analyses for 8 metabolic traits and 6 inflammatory markers by using existing GWAS published genetic summary results, with about 2.5 million SNPs from twelve predominantly largest GWAS consortia. These analyses yielded 130 unique SNPs/genes with pleiotropic associations (a SNP/gene associating at least one metabolic trait and one inflammatory marker). Of them twenty-five variants (seven loci newly reported) are proposed as MetS candidates. They map to genes MACF1, KIAA0754, GCKR, GRB14, COBLL1, LOC646736-IRS1, SLC39A8, NELFE, SKIV2L, STK19, TFAP2B, BAZ1B, BCL7B, TBL2, MLXIPL, LPL, TRIB1, ATXN2, HECTD4, PTPN11, ZNF664, PDXDC1, FTO, MC4R and TOMM40. Based on large data evidence, we conclude that inflammation is a feature of MetS and several gene variants show pleiotropic genetic

  15. Koncepcja resilience. Kluczowe pojęcia i wybrane zagadnienia

    PubMed Central

    Borucka, Anna; Ostaszewski, Krzysztof

    2009-01-01

    Streszczenie Celem niniejszej pracy jest przybliżenie kluczowych pojęć związanych koncepcją resilience. Ta koncepcja wyjaśnia fenomen pozytywnej adaptacji dzieci i młodzieży narażonych na duże ryzyko, przeciwności losu i/lub zdarzenia traumatyczne. Koncepcja resilience akcentuje znaczenie czynników i mechanizmów chroniących w wieku rozwojowym. Z tych przyczyn może być bardzo użyteczna dla rozwijania programów profilaktyki i promocji zdrowia psychicznego wśród dzieci i młodzieży. W niniejszym przeglądzie wykorzystano prace znaczących Autorów zajmujących się tą dziedziną m.in. M. Ruttera. N. Garmezy, E. Werner, S. Luthar, A. Sameroffa, K. Kumpfer, A. Masten, M. Zimmermana, D. Cicchetti. W przeglądzie uwzględniono ponad 20 artykułów i rozdziałów książkowych, które ukazały się w ostatnich 25 latach. Zostały one wybrane z elektronicznej bazy publikacji dostępnej na Uniwersytecie Michigan: elektronicznej bazy SAMSHA oraz z elektronicznych baz publikacji naukowych dostępnych w naszym kraju. W artykule przytoczono kilka definicji resilience, które wskazują na jej interaktywny i dynamiczny charakter. Uwzględniają one wzajemny wpływ czynników ryzyka i czynników chroniących (i ich interakcję) na zachowanie człowieka, jego kompetencje i zdrowie psychiczne. W pracy opisano podstawowe pojęcia związane z resilience: ryzyko, czynniki ryzyka, czynniki chroniące, pozytywną adaptację oraz teoretyczne modele i mechanizmy resilience. Przedstawiono różnice między mechanizmami ryzyka a mechanizmami chroniącymi. Zasygnalizowano też trudności związane z wykorzystaniem podstawowych pojęć resilience w badaniach empirycznych m.in. w określeniu wskaźników ryzyka, wyodrębnieniu grup ryzyka, określeniu wskaźników pozytywnej adaptacji. PMID:19301507

  16. Sequence-specific labeling of nucleic acids and proteins with methyltransferases and cofactor analogues.

    PubMed

    Hanz, Gisela Maria; Jung, Britta; Giesbertz, Anna; Juhasz, Matyas; Weinhold, Elmar

    2014-11-22

    S-Adenosyl-l-methionine (AdoMet or SAM)-dependent methyltransferases (MTase) catalyze the transfer of the activated methyl group from AdoMet to specific positions in DNA, RNA, proteins and small biomolecules. This natural methylation reaction can be expanded to a wide variety of alkylation reactions using synthetic cofactor analogues. Replacement of the reactive sulfonium center of AdoMet with an aziridine ring leads to cofactors which can be coupled with DNA by various DNA MTases. These aziridine cofactors can be equipped with reporter groups at different positions of the adenine moiety and used for Sequence-specific Methyltransferase-Induced Labeling of DNA (SMILing DNA). As a typical example we give a protocol for biotinylation of pBR322 plasmid DNA at the 5'-ATCGAT-3' sequence with the DNA MTase M.BseCI and the aziridine cofactor 6BAz in one step. Extension of the activated methyl group with unsaturated alkyl groups results in another class of AdoMet analogues which are used for methyltransferase-directed Transfer of Activated Groups (mTAG). Since the extended side chains are activated by the sulfonium center and the unsaturated bond, these cofactors are called double-activated AdoMet analogues. These analogues not only function as cofactors for DNA MTases, like the aziridine cofactors, but also for RNA, protein and small molecule MTases. They are typically used for enzymatic modification of MTase substrates with unique functional groups which are labeled with reporter groups in a second chemical step. This is exemplified in a protocol for fluorescence labeling of histone H3 protein. A small propargyl group is transferred from the cofactor analogue SeAdoYn to the protein by the histone H3 lysine 4 (H3K4) MTase Set7/9 followed by click labeling of the alkynylated histone H3 with TAMRA azide. MTase-mediated labeling with cofactor analogues is an enabling technology for many exciting applications including identification and functional study of MTase substrates as

  17. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits.

    PubMed

    Haddad, Nizar; Mahmud Batainh, Ahmed; Suleiman Migdadi, Osama; Saini, Deepti; Krishnamurthy, Venkatesh; Parameswaran, Sriram; Alhamuri, Zaid

    2016-08-01

    Apis mellifera syriaca exhibits a high degree of tolerance to pests and pathogens including varroa mites. This native honey bee subspecies of Jordan expresses behavioral adaptations to high temperature and dry seasons typical of the region. However, persistent honey bee imports of commercial breeder lines are endangering local honey bee population. This study reports the use of next-generation sequencing (NGS) technology to study the A. m. syriaca genome and to identify genetic factors possibly contributing toward mite resistance and other favorable traits. We obtained a total of 46.2 million raw reads by applying the NGS to sequence A. m. syriaca and used extensive bioinformatics approach to identify several candidate genes for Varroa mite resistance, behavioral and immune responses characteristic for these bees. As a part of characterizing the functional regulation of molecular genetic pathway, we have mapped the pathway genes potentially involved using information from Drosophila melanogaster and present possible functional changes implicated in responses to Varroa destructor mite infestation toward this. We performed in-depth functional annotation methods to identify ∼600 candidates that are relevant, genes involved in pathways such as microbial recognition and phagocytosis, peptidoglycan recognition protein family, Gram negative binding protein family, phagocytosis receptors, serpins, Toll signaling pathway, Imd pathway, Tnf, JAK-STAT and MAPK pathway, heamatopioesis and cellular response pathways, antiviral, RNAi pathway, stress factors, etc. were selected. Finally, we have cataloged function-specific polymorphisms between A. mellifera and A. m. syriaca that could give better understanding of varroa mite resistance mechanisms and assist in breeding. We have identified immune related embryonic development (Cactus, Relish, dorsal, Ank2, baz), Varroa hygiene (NorpA2, Zasp, LanA, gasp, impl3) and Varroa resistance (Pug, pcmt, elk, elf3-s10, Dscam2, Dhc64C, gro

  18. Density Variations in Quartz As a Key for Deciphering Impact-Related Ultrasonic Sounding (Rajlich's Hypothesis)?

    NASA Astrophysics Data System (ADS)

    Mestan, J.; Alvarez Polanco, E. I.

    2014-12-01

    Ultrasound is a form of mechanical energy with a frequency greater than ≈ 20 kHz (upper human hearing limit). It is used in many scientific as well as industrial fields. Most modern applications of ultrasound utilize sources which are either piezoelectric or magnetostrictive (Benwell et Bly 1987). A meteorite impact has been considered to be an ultrasound source during last years (Rajlich 2011). Rajlich (2014) is coming with a hypothesis that white planes made of microcavities in Bohemian quartz have their origin in an impact-related ultrasonic sounding. The Bohemian Massif has been considered to be one of the largest impact craters in whole of the world (Papagiannis et El-Baz 1988, Papagiannis 1989, Rajlich 2014). Rajlich's hypothesis implies a liquid behavior of quartz during the impact event. We state that then there have to exist planes of slightly higher density than their surroundings together with planes of microcavities. They should intersect each other without mutual influencing (as in a case of planes made of microcavities). Because physics of ultrasound during an impact event is a brand new and unknown field, we try to choose a simple way of its cognition. It is possible to take the sine wave and set 3 requirements. (1) There exist some surroundings of points of peak amplitudes. (2) These surroundings are of higher density (compression) or lower density (rarefaction) than the mean density of quartz. (3) The difference between the higher/lower and surrounding density is measurable. There was done an experimental study of Bohemian quartz using QCT bone densitometry at the Radiology Munich. Quartz with a size of ≈ 5 x 8 cm absorbed too much RTG radiation (kV 140, mAs 330), which made a picture of internal structure impossible. We propose another techniques and appeal to other scientists to face this challenge. If Bohemian quartz has a harmonically distributed density, we consider it to be a support for Rajlich's hypothesis. AcknowledgementsWe would like

  19. Next generation sequencing of Apis mellifera syriaca identifies genes for Varroa resistance and beneficial bee keeping traits.

    PubMed

    Haddad, Nizar; Mahmud Batainh, Ahmed; Suleiman Migdadi, Osama; Saini, Deepti; Krishnamurthy, Venkatesh; Parameswaran, Sriram; Alhamuri, Zaid

    2016-08-01

    Apis mellifera syriaca exhibits a high degree of tolerance to pests and pathogens including varroa mites. This native honey bee subspecies of Jordan expresses behavioral adaptations to high temperature and dry seasons typical of the region. However, persistent honey bee imports of commercial breeder lines are endangering local honey bee population. This study reports the use of next-generation sequencing (NGS) technology to study the A. m. syriaca genome and to identify genetic factors possibly contributing toward mite resistance and other favorable traits. We obtained a total of 46.2 million raw reads by applying the NGS to sequence A. m. syriaca and used extensive bioinformatics approach to identify several candidate genes for Varroa mite resistance, behavioral and immune responses characteristic for these bees. As a part of characterizing the functional regulation of molecular genetic pathway, we have mapped the pathway genes potentially involved using information from Drosophila melanogaster and present possible functional changes implicated in responses to Varroa destructor mite infestation toward this. We performed in-depth functional annotation methods to identify ∼600 candidates that are relevant, genes involved in pathways such as microbial recognition and phagocytosis, peptidoglycan recognition protein family, Gram negative binding protein family, phagocytosis receptors, serpins, Toll signaling pathway, Imd pathway, Tnf, JAK-STAT and MAPK pathway, heamatopioesis and cellular response pathways, antiviral, RNAi pathway, stress factors, etc. were selected. Finally, we have cataloged function-specific polymorphisms between A. mellifera and A. m. syriaca that could give better understanding of varroa mite resistance mechanisms and assist in breeding. We have identified immune related embryonic development (Cactus, Relish, dorsal, Ank2, baz), Varroa hygiene (NorpA2, Zasp, LanA, gasp, impl3) and Varroa resistance (Pug, pcmt, elk, elf3-s10, Dscam2, Dhc64C, gro

  20. Association of NOD2 and IL23R with Inflammatory Bowel Disease in Puerto Rico

    PubMed Central

    Ballester, Veroushka; Guo, Xiuqing; Vendrell, Roberto; Haritunians, Talin; Klomhaus, Alexandra M.; Li, Dalin; McGovern, Dermot P. B.; Rotter, Jerome I.; Torres, Esther A.; Taylor, Kent D.

    2014-01-01

    The Puerto Rico population may be modeled as an admixed population with contributions from three continents: Sub-Saharan Africa, Ancient America, and Europe. Extending the study of the genetics of inflammatory bowel disease (IBD) to an admixed population such as Puerto Rico has the potential to shed light on IBD genes identified in studies of European populations, find new genes contributing to IBD susceptibility, and provide basic information on IBD for the care of US patients of Puerto Rican and Latino descent. In order to study the association between immune-related genes and Crohn’s disease (CD) and ulcerative colitis (UC) in Puerto Rico, we genotyped 1159 Puerto Rican cases, controls, and family members with the ImmunoChip. We also genotyped 832 subjects from the Human Genome Diversity Panel to provide data for estimation of global and local continental ancestry. Association of SNPs was tested by logistic regression corrected for global continental descent and family structure. We observed the association between Crohn’s disease and NOD2 (rs17313265, 0.28 in CD, 0.19 in controls, OR 1.5, p = 9×10−6) and IL23R (rs11209026, 0.026 in CD, 0.0.071 in controls, OR 0.4, p = 3.8×10−4). The haplotype structure of both regions resembled that reported for European populations and “local” continental ancestry of the IL23R gene was almost entirely of European descent. We also observed suggestive evidence for the association of the BAZ1A promoter SNP with CD (rs1200332, 0.45 in CD, 0.35 in controls, OR 1.5, p = 2×10−6). Our estimate of continental ancestry surrounding this SNP suggested an origin in Ancient America for this putative susceptibility region. Our observations underscored the great difference between global continental ancestry and local continental ancestry at the level of the individual gene, particularly for immune-related loci. PMID:25259511

  1. The geovisualisation window of the temporal and spatial variability for Volunteered Geographic Information activities

    NASA Astrophysics Data System (ADS)

    Medynska-Gulij, Beata; Myszczuk, Miłosz

    2012-11-01

    panele jest wyeksponowana graficznie pojedyncza aktywnosc. Przetwarzanie danych odbyło sie w srodowisku open source, a technologia funkcjonowania aplikacji okna geowizualizacji bazowała na zastosowaniu asynchronicznych zapytan do serwera WWW oraz serwera baz danych co zapewnia sprawne "odswiezanie” poszczególnych paneli.

  2. Young Lunar Volcanic Features: How Did They Form?

    NASA Astrophysics Data System (ADS)

    Elder, Catherine; Hayne, Paul O.; Donaldson Hanna, Kerri; Bandfield, Joshua; Ghent, Rebecca; Williams, Jean-Pierre; Paige, David A.

    2016-10-01

    Irregular mare patches (IMPs) on the Moon are younger than 100 Myr [1, 2], but their formation mechanism is unknown. Previous work has suggested caldera collapse [3], explosive outgassing [2], pyroclastic eruptions [4], basaltic lava flows [1, 5], and regolith drainage into graben [6]. Here we present observations from the Lunar Reconnaissance Orbiter (LRO) Diviner thermal radiometer of the four largest IMPs. These observations suggest that the surfaces of the IMPs are on average only slightly rockier than the surrounding regolith. The nighttime cooling curves of the IMPs and the surrounding regolith do not intersect, which suggests that there is no layering in the top 5-10 cm of the IMPs. We also measure the thermal inertia (parameterized through the "H-parameter" [7]) of the IMPs. We find that the thermal inertia of Sosigenes is higher than that of the surrounding regolith (probably due to mass wasting), the thermal inertia of Cauchy-5 and Maskelyne is not significantly different from the surrounding regolith, and the thermal inertia of the largest smooth mound in Ina is significantly lower than the surrounding regolith. Only some IMPs are in topographic depressions or associated with graben, so neither caldera collapse nor drainage into graben can explain the formation of all IMPs. It is unlikely that basaltic lava flows would lead to a thermal inertia lower than that of lunar regolith. Therefore, of the formation mechanisms proposed to date, pyroclastic eruptions or another type of explosive outgassing [e.g. 2] possibly accompanied by basaltic lava flows or drainage into graben best explain the available observations of IMPs.[1] Braden, S. et al. (2014) Nature Geo 7, 787-791. [2] Schultz, P. H. et al. (2006) Nature 444, 184-186. [3] El-Baz, F. (1973) Apollo 17: Preliminary Science Report 330, 30-13. [4] Carter, L. B. et al. (2013) LPSC 44, 2146. [5] Garry, W. B. et al. (2012) JGR 117, E00H31. [6] Qiao, L. et al. (2002) LPSC 47, 2002. [7] Vasavada, A. R. et al

  3. Maternal Micronutrient Supplementation and Long Term Health Impact in Children in Rural Bangladesh

    PubMed Central

    Mannan, Tania; Ahmed, Sultan; Akhtar, Evana; Roy, Anjan Kumar; Haq, Md Ahsanul; Roy, Adity; Kippler, Maria; Ekström, Eva-Charlotte; Wagatsuma, Yukiko; Raqib, Rubhana

    2016-01-01

    Background Limited data is available on the role of prenatal nutritional status on the health of school-age children. We aimed to determine the impact of maternal micronutrient supplementation on the health status of Bangladeshi children. Methods Children (8.6–9.6 years; n = 540) were enrolled from a longitudinal mother-child cohort, where mothers were supplemented daily with either 30mg iron and 400μg folic acid (Fe30F), or 60mg iron and 400μg folic acid (Fe60F), or Fe30F including 15 micronutrients (MM), in rural Matlab. Blood was collected from children to determine the concentration of hemoglobin (Hb) and several micronutrients. Anthropometric and Hb data from these children were also available at 4.5 years of age and mothers at gestational week (GW) 14 and 30. Results MM supplementation significantly improved (p≤0.05) body mass index-for-age z-score (BAZ), but not Hb levels, in 9 years old children compared to the Fe30F group. MM supplementation also reduced markers of inflammation (p≤0.05). About 28%, 35% and 23% of the women were found to be anemic at GW14, GW30 and both time points, respectively. The prevalence of anemia was 5% and 15% in 4.5 and 9 years old children, respectively. The adjusted odds of having anemia in 9 year old children was 3-fold higher if their mothers were anemic at both GW14 and GW30 [Odds Ratio (OR) = 3.05; 95% Confidence Interval (CI) 1.42, 6.14, P = 0.002] or even higher if they were also anemic at 4.5 years of age [OR = 5.92; 95% CI 2.64, 13.25; P<0.001]. Conclusion Maternal micronutrient supplementation imparted beneficial effects on child health. Anemia during pregnancy and early childhood are important risk factors for the occurrence of anemia in school-age children. PMID:27537051

  4. Large Multiethnic Candidate Gene Study for C-Reactive Protein Levels: Identification of a Novel Association at CD36 in African Americans

    PubMed Central

    Ellis, Jaclyn; Lange, Ethan M.; Li, Jin; Dupuis, Josee; Baumert, Jens; Walston, Jeremy D.; Keating, Brendan J.; Durda, Peter; Fox, Ervin R.; Palmer, Cameron D.; Meng, Yan A.; Young, Taylor; Farlow, Deborah N.; Schnabel, Renate B.; Marzi, Carola S.; Larkin, Emma; Martin, Lisa W.; Bis, Joshua C.; Auer, Paul; Ramachandran, Vasan S.; Gabriel, Stacey B.; Willis, Monte S.; Pankow, James S.; Papanicolaou, George J.; Rotter, Jerome I.; Ballantyne, Christie M.; Gross, Myron D.; Lettre, Guillaume; Wilson, James G.; Peters, Ulrike; Koenig, Wolfgang; Tracy, Russell P.; Redline, Susan; Reiner, Alex P.; Benjamin, Emelia J.; Lange, Leslie A.

    2014-01-01

    C-reactive protein (CRP) is a heritable biomarker of systemic inflammation and a predictor of cardiovascular disease (CVD). Large-scale genetic association studies for CRP have largely focused on individuals of European descent. We sought to uncover novel genetic variants for CRP in a multi-ethnic sample using the ITMAT Broad-CARe (IBC) array, a custom 50,000 SNP gene-centric array having dense coverage of over 2,000 candidate CVD genes. We performed analyses on 7570 African Americans (AA) from the Candidate gene Association Resource (CARe) study and race-combined meta-analyses that included 29,939 additional individuals of European descent from CARe, the Women’s Health Initiative (WHI) and KORA studies. We observed array-wide significance (p<2.2×10−6) for four loci in AA, three of which have been reported previously in individuals of European descent (IL6R, p=2.0×10−6; CRP, p=4.2×10−71; APOE, p=1.6×10−6). The fourth significant locus, CD36 (p=1.6×10−6), was observed at a functional variant (rs3211938) that is extremely rare in individuals of European descent. We replicated the CD36 finding (p=1.8×10−5) in an independent sample of 8041 AA women from WHI; a meta-analysis combining the CARe and WHI AA results at rs3211938 reached genome-wide significance (p=1.5×10−10). In the race-combined meta-analyses, 13 loci reached significance, including ten (CRP, TOMM40/APOE/APOC1, HNF1A, LEPR, GCKR, IL6R, IL1RN, NLRP3, HNF4A and BAZ1B/BCL7B) previously associated with CRP, and one (ARNTL) previously reported to be nominally associated with CRP. Two novel loci were also detected (RPS6KB1, p=2.0×10−6; CD36, p=1.4×10−6). These results highlight both shared and unique genetic risk factors for CRP in AA compared to populations of European descent. PMID:24643644

  5. Remote sensing of the hydrologic history of the eastern Sahara

    NASA Astrophysics Data System (ADS)

    Farr, T. G.; Blom, R. G.; Paillou, P.

    2010-12-01

    The eastern Sahara Desert has never been thoroughly mapped in terms of the landforms and subsurface signs of past climates conducive to human occupation. As part of ongoing work and through a new proposal to NASA, we are generating new maps of the paleohydrology, topography, geomorphology, and surficial deposits of the area and developing GIS-based models which use the data to pinpoint past resources and travel pathways. The maps we are generating will constitute a unique resource for exploration for water and archeological sites in the Gilf Kebir and other regions of NE Africa. That the Sahara was favorable for human habitation at times has long been known. With the remarkable paleo-landscape revealed by the L-band (25 cm) Shuttle Imaging Radar-A in 1981, it became clear that ancient humans concentrated along integrated drainage systems dubbed “radar rivers” by McCauley and colleagues. However SIR-A and subsequent long-wavelength radar coverage was limited and regional understanding of the drainage network has remained elusive. We are mapping the area with three sensors optimized for mapping and characterizing arid regions: The Japanese PALSAR L-band imaging radar, NASA’s SRTM, and ASTER. Together these sensors provide full coverage of the area allowing characterization and mapping of surface and subsurface landforms formed and modified by former wetter climates. In particular and following the work of Ghoneim, Robinson, El Baz and others, we are mapping the regional drainage network revealed by the radar images and applying modern analysis tools to the drainage basins and channels. These include drainage density, channel gradient vs. distance, and longitudinal and cross-channel topographic profiles. We use these quantities to estimate a stream’s past approach to equilibrium and this to infer balances between climate, tectonic uplift, and other changes in base level. Discovery over the last few years of large paleolakes (e.g. Mega Lake Chad, North Darfur

  6. Selected Properties of Flotation Tailings Wastes Deposited in the Gilów and Żelazny Most Waste Reservoirs Regarding Their Potential Environmental Management / Wybrane Właściwości Odpadów Poflotacyjnych Zdeponowanych W Zbiornikach Gilów I Żelazny Most W Aspekcie Możliwości Ich Zagospodarowania Przyrodniczego

    NASA Astrophysics Data System (ADS)

    Baran, Agnieszka; Śliwka, Małgorzata; Lis, Marcin

    2013-09-01

    Wastes originating from copper mining, particularly generated during the ore enrichment process constitute a considerable percentage of industrial wastes in Poland, which theoretically are supposed to provide a raw material base but remain wholly unmanaged. Wastes from copper flotation are deposited on the waste dumps which pose a significant eco-toxicological hazard. The paper discussed the results of analysis of selected post-floatation waste properties deposited in the Żelazny Most and Gilów reservoirs from the perspective of their environmental management. Odpady pochodzące z górnictwa miedzi, szczególnie powstające w procesie wzbogacania rudy, stanowią znaczny odsetek odpadów przemysłowych w naszym kraju, które teoretycznie zasilić mają bazę surowcową i w całości pozostają niezagospodarowane. Odpady z procesu flotacji miedzi są deponowane na składowiskach i stanowią zagrożeniem ekologicznym i ekotoksykologicznym dla środowiska przyrodniczego i człowieka. Niekorzystne oddziaływanie składowisk odpadów poflotacyjnych na środowisko to przede wszystkim deformacje terenu, zanieczyszczenia gleb zanieczyszczeń roślinności metalami ciężkimi, oraz zanieczyszczenie wód powierzchniowych i podziemnych. W artykule zostały omówione niektóre właściwości fizykochemiczne oraz ekotoksykologiczne odpadów poflotacyjnych deponowanych w zbiornikach Żelazny Most i Gilów pod kątem ich biologicznego zagospodarowania. Próbki pobranych osadów, po odpowiednim przygotowaniu, poddano ocenie wybranych parametrów fizycznych, analizie chemicznej oraz serii testów ekotoksykologicznych. Właściwości ekotoksykologiczne osadów oceniono przy użyciu baterii biotestów składającej się z dwóch biotestów pracujących na pięciu organizmach (tab. 1). W teście Phytotoxkit do pomiaru toksyczności osadu wykorzystano trzy rośliny: Sorghum saccharatum, Lepidium sativum i Sinapis alba. Mierzonym parametrem było zahamowanie kiełkowania nasion oraz d

  7. Inventory of Multiring Basins on the Moon After the Clementine Mission

    NASA Astrophysics Data System (ADS)

    Spudis, P. D.

    1995-09-01

    topography for a basin is that of the degraded Lomonosov-Fleming basin [3,6]. This feature appears as a quasi-circular, smooth plateau of nearly constant elevation about 500 km across. Such an expression is likely caused by infilling of the basin with ancient mare basalts, covered by highland plains and reexposed as the ejecta of dark halo impact craters [7,8]. This interpretation is supported by the mafic signature of the plains in this region in the Clementine global color image [9] and the presense of elevated amounts of iron in the highland crust here [10]. The altimetry data also show many depressions that are likely to be previously unrecognized basins. For example, depressions near the crater Darwin (20 degrees S, 70 degrees W; basin about 300 km diameter), eastern Mare Frigoris (55 degrees N, 30 degrees W; basin about 700 km across), and east of Mare Humboldtianum (60 degrees N, 130 degrees E; basin about 400 km diameter) are probably degraded impact basins. To date, over 45 basins and their rings have been mapped on the Moon and the relief and volumes of the basins have been measured. Work continues on the analysis of this numerical data, which should give insight into the processes of basin formation and planetary evolution. References: [1] Wilhelms D. E. (1987) USGS Prof. Pap. 1348, 302 pp. [2] Spudis P. D. (1993) Geology of Multi-Ring Impact Basins, Cambridge Univ., 263 pp. [3] Nozette S. et al. (1994) Science, 266, 1835. [4] Zuber M. T. et al. (1994) Science, 266, 1839. [5] Spudis P. D. et al. (1994) Science, 266, 1848. [6] Wilhelms D. and El-Baz F. (1977) USGS Map I-948. [7] Schultz P. H. and Spudis P. D. (1979) Proc. LPSC 10th, 2899. [8] Schultz P. H. and Spudis P. D. (1982) Nature, 302, 233. [9] Lucey P. G. et al. (1994) Science, 266, 1855. [10] Lucey P. G. et al. (1995) Science, 268, 1150.

  8. New Criteria to Assess Seismic and Rock Burst Hazard in Coal Mines / Nowe Kryteria Dla Oceny Zagrożenia Sejsmicznego I Tąpaniami W Kopalniach Węgla Kamiennego

    NASA Astrophysics Data System (ADS)

    Mutke, Grzegorz; Dubiński, Józef; Lurka, Adam

    2015-09-01

    niektórych przypadkach również wypadki śmiertelne. Przedstawiono podstawowe parametry sejsmologiczne stosowane w kraju i w świecie do oceny zagrożenia sejsmicznego. Opisano podstawowe zasady metody kompleksowej oceny stanu zagrożenia tąpnięciem, w skład której wchodzi metoda sejsmologiczna bieżącej (pomiarowej) oceny stanu zagrożenia. Od wielu lat, wraz z ciągłym rozwojem bazy aparaturowej i możliwości w zakresie cyfrowej rejestracji sejsmogramów oraz przetwarzania i interpretacji danych pomiarowych wzrasta znaczenie metod sejsmicznych, które są dzisiaj powszechnie stosowane w polskich kopalniach zagrożonych tąpaniami. Ciągła obserwacja zjawisk sejsmicznych indukowanych w trakcie rozwoju procesu eksploatacji pokładów węgla umożliwiła, w oparciu o zgromadzoną bazę danych, opracowywanie nowych kryteriów zagrożenia sejsmicznego oraz zagrożenia tąpnięciem, które winny wyraźnie poprawić efektywność metody sejsmologii górniczej. W artykule przedstawiono nowe kryteria oceny stanu bieżącego zagrożenia tąpaniami zaproponowane do stosowania w polskich kopalniach węgla kamiennego, które prowadzą eksploatację systemem ścianowym. Kryteria te są oparte na wynikach ciągłej rejestracji sejsmologicznej, połączonej z bieżącą analizą zarejestrowanych wstrząsów i obliczaniem wybranych parametrów sejsmologicznych. Parametry te to położenie ognisk wstrząsów w stosunku do wyrobisk eksploatacyjnych, energia sejsmiczna wstrząsów, suma energii sejsmicznej wyzwolona na każde 5m postępu ściany eksploatacyjnej, wartość wagowanego parametru amplitudy prędkości drgań PPVW, moment sejsmiczny M0, indeks energii EI oraz parametr b rozkładu wstrząsów według relacji Gutenberga-Richtera. Wartości powyższych parametrów są określane dla każdej doby lub w przesuwających się co dobę oknach czasowych lub oknach zawierających określoną liczbę wstrząsów, a następnie porównywane, raz na dobę, z ich wartościami

  9. Ages of Lunar Light Plains

    NASA Astrophysics Data System (ADS)

    Hiesinger, Harald; Howes van der Bogert, Carolyn; Thiessen, Fiona; Robinson, Mark

    2013-04-01

    light plains are necessary to corroborate this preliminary observation. In general, our new absolute model ages are similar to model ages derived for light plains north of Mare Frigoris (3.65-4.0 Ga) [6], light plains within the SPA basin (3.43-3.81 Ga) [7], and light plains in the surroundings of the Orientale and Imbrium basins (3.8-4.3 Ga) [8]. The ages are not only similar, but also show similar ranges. While our model ages vary by about 300 Ma, model ages of [6,7] exhibit ranges of ~350 Ma and ~380 Ma, respectively. Ages of [8] show a somewhat wider range of ~500 Ma. From this wide range in ages it has been concluded that a formation of the light plains by a single event (i.e., Orientale or Imbrium) is unlikely [6-8]. References: [1] Wilhelms and McCauley (1971), USGS I-703; [2] Stuart-Alexander (1978), USGS I-1047; [3] Wilhelms et al. (1979), USGS I-1162; [4] Scott et al. (1977), USGS I-1034; [5] Wilhelms and El-Baz (1977), USGS I-948; [6] Köhler et al. (2000), LPSC 31, #1822; [7] Thiessen et al. (2012), LPSC 43, #2060; [8] Neukum (1977b), Moon 17, 383-393.

  10. New Criteria to Assess Seismic and Rock Burst Hazard in Coal Mines / Nowe Kryteria Dla Oceny Zagrożenia Sejsmicznego I Tąpaniami W Kopalniach Węgla Kamiennego

    NASA Astrophysics Data System (ADS)

    Mutke, Grzegorz; Dubiński, Józef; Lurka, Adam

    2015-09-01

    niektórych przypadkach również wypadki śmiertelne. Przedstawiono podstawowe parametry sejsmologiczne stosowane w kraju i w świecie do oceny zagrożenia sejsmicznego. Opisano podstawowe zasady metody kompleksowej oceny stanu zagrożenia tąpnięciem, w skład której wchodzi metoda sejsmologiczna bieżącej (pomiarowej) oceny stanu zagrożenia. Od wielu lat, wraz z ciągłym rozwojem bazy aparaturowej i możliwości w zakresie cyfrowej rejestracji sejsmogramów oraz przetwarzania i interpretacji danych pomiarowych wzrasta znaczenie metod sejsmicznych, które są dzisiaj powszechnie stosowane w polskich kopalniach zagrożonych tąpaniami. Ciągła obserwacja zjawisk sejsmicznych indukowanych w trakcie rozwoju procesu eksploatacji pokładów węgla umożliwiła, w oparciu o zgromadzoną bazę danych, opracowywanie nowych kryteriów zagrożenia sejsmicznego oraz zagrożenia tąpnięciem, które winny wyraźnie poprawić efektywność metody sejsmologii górniczej. W artykule przedstawiono nowe kryteria oceny stanu bieżącego zagrożenia tąpaniami zaproponowane do stosowania w polskich kopalniach węgla kamiennego, które prowadzą eksploatację systemem ścianowym. Kryteria te są oparte na wynikach ciągłej rejestracji sejsmologicznej, połączonej z bieżącą analizą zarejestrowanych wstrząsów i obliczaniem wybranych parametrów sejsmologicznych. Parametry te to położenie ognisk wstrząsów w stosunku do wyrobisk eksploatacyjnych, energia sejsmiczna wstrząsów, suma energii sejsmicznej wyzwolona na każde 5m postępu ściany eksploatacyjnej, wartość wagowanego parametru amplitudy prędkości drgań PPVW, moment sejsmiczny M0, indeks energii EI oraz parametr b rozkładu wstrząsów według relacji Gutenberga-Richtera. Wartości powyższych parametrów są określane dla każdej doby lub w przesuwających się co dobę oknach czasowych lub oknach zawierających określoną liczbę wstrząsów, a następnie porównywane, raz na dobę, z ich wartościami

  11. The Application of Coreless Inductors for Displacement Measurements in Laboratory Investigations of Rock Properties

    NASA Astrophysics Data System (ADS)

    Nurkowski, Janusz

    2014-12-01

    ści termicznej (rys. 7). Zmiany częstotliwości z czujnika referencyjnego są poprawkami do wskazań czujnika pomiarowego. Oba czujniki są naprzemiennie podłączane do tego samego generatora poprzez elektroniczny przełącznik (rys. 5). Zastosowanie jednego generatora powoduje, że poprawki te umożliwiają również praktycznie całkowitą eliminację błędu pomiaru ze względu na zmiany temperatury otoczenia i napięcia zasilania na generator i częstościomierz. Charakterystyka przetwornika długość-częstotliwość jest nieliniowa (rys. 3), co wynika z zależności między długością cewki czujnika, więc jej indukcyjnością, a częstotliwością rezonansową obwodu LC (1). Najdokładniej charakterystykę czujnika otrzymać można przez wzorcowanie. Uwzględnione są wtedy głównie pasożytnicze indukcyjności i pojemności połączeń, których wartości trudno obliczyć lub zmierzyć. W pomiarach należy dążyć, na ile to możliwe, do montowania krótkiego czujnika do długich próbek, w ten sposób zmiany długości badanego materiału będą większe, a krótszy czujnik dozna większego odkształcenia, więc czułość pomiaru będzie duża. Jednak zbyt krótki czujnik ma małą indukcyjność i wtedy jego czułość ograniczy indukcyjność połączeń (2). Opracowano dwa podstawowe typy takiego czujnika. Pierwszy, do pomiaru odkształceń liniowych, np. do pomiaru ściśliwości (rys. 2 i 6), o prostej cewce, który jest mocowany do próbki za pośrednictwem zaczepów przytwierdzonych do niej. W ten sposób czujnik nie kontaktuje się bezpośrednio z powierzchnią próbki, i odkształca się bez tarcia, co umożliwia precyzyjny pomiar, szczególnie przy obciążaniu cyklicznym. Bazę pomiarową można dostosowywać do długości próbki, mocując czujnik do zaczepów poprzez łączniki, uzyskując globalny pomiar odkształceń. Czujnik mierzy zmiany długości z rozdzielczością poniżej 1 μm, przy maksymalnych odkształceniach czujnika o kilkadziesi