Science.gov

Sample records for information database program

  1. Rural Water Quality Database: Educational Program to Collect Information.

    ERIC Educational Resources Information Center

    Lemley, Ann; Wagenet, Linda

    1993-01-01

    A New York State project created a water quality database for private drinking water supplies, using the statewide educational program to collect the data. Another goal was to develop this program so rural residents could increase their knowledge of water supply management. (Author)

  2. A Statewide Information Databases Program: What Difference Does It Make to Academic Libraries?

    ERIC Educational Resources Information Center

    Lester, June; Wallace, Danny P.

    2004-01-01

    The Oklahoma Department of Libraries (ODL) launched Oklahoma's statewide database program in 1997. For the state's academic libraries, the program extended access to information, increased database use, and fostered positive relationships among ODL, academic libraries, and Oklahoma State Regents for Higher Education (OSRHE), creating a more…

  3. An Examination of Job Skills Posted on Internet Databases: Implications for Information Systems Degree Programs.

    ERIC Educational Resources Information Center

    Liu, Xia; Liu, Lai C.; Koong, Kai S.; Lu, June

    2003-01-01

    Analysis of 300 information technology job postings in two Internet databases identified the following skill categories: programming languages (Java, C/C++, and Visual Basic were most frequent); website development (57% sought SQL and HTML skills); databases (nearly 50% required Oracle); networks (only Windows NT or wide-area/local-area networks);…

  4. An Examination of Job Skills Posted on Internet Databases: Implications for Information Systems Degree Programs.

    ERIC Educational Resources Information Center

    Liu, Xia; Liu, Lai C.; Koong, Kai S.; Lu, June

    2003-01-01

    Analysis of 300 information technology job postings in two Internet databases identified the following skill categories: programming languages (Java, C/C++, and Visual Basic were most frequent); website development (57% sought SQL and HTML skills); databases (nearly 50% required Oracle); networks (only Windows NT or wide-area/local-area networks);…

  5. Demonstration of SLUMIS: a clinical database and management information system for a multi organ transplant program.

    PubMed Central

    Kurtz, M.; Bennett, T.; Garvin, P.; Manuel, F.; Williams, M.; Langreder, S.

    1991-01-01

    Because of the rapid evolution of the heart, heart/lung, liver, kidney and kidney/pancreas transplant programs at our institution, and because of a lack of an existing comprehensive database, we were required to develop a computerized management information system capable of supporting both clinical and research requirements of a multifaceted transplant program. SLUMIS (ST. LOUIS UNIVERSITY MULTI-ORGAN INFORMATION SYSTEM) was developed for the following reasons: 1) to comply with the reporting requirements of various transplant registries, 2) for reporting to an increasing number of government agencies and insurance carriers, 3) to obtain updates of our operative experience at regular intervals, 4) to integrate the Histocompatibility and Immunogenetics Laboratory (HLA) for online test result reporting, and 5) to facilitate clinical investigation. PMID:1807741

  6. Physiological Information Database (PID)

    EPA Science Inventory

    EPA has developed a physiological information database (created using Microsoft ACCESS) intended to be used in PBPK modeling. The database contains physiological parameter values for humans from early childhood through senescence as well as similar data for laboratory animal spec...

  7. Physiological Information Database (PID)

    EPA Science Inventory

    EPA has developed a physiological information database (created using Microsoft ACCESS) intended to be used in PBPK modeling. The database contains physiological parameter values for humans from early childhood through senescence as well as similar data for laboratory animal spec...

  8. Database Reviews: Legal Information.

    ERIC Educational Resources Information Center

    Seiser, Virginia

    Detailed reviews of two legal information databases--"Laborlaw I" and "Legal Resource Index"--are presented in this paper. Each database review begins with a bibliographic entry listing the title; producer; vendor; cost per hour contact time; offline print cost per citation; time period covered; frequency of updates; and size…

  9. Unified Database Development Program.

    DTIC Science & Technology

    1984-03-01

    unified database (UDB) program was to develop an automated system that would be useful to those responsible for the design , development, testing, and...weapon system design . Baekgound The Air Force is concerned with the lack of adequate logistics consideration during the weapon system design process. To...produce a weapon system with optimal cost and mission effectiveness, logistics factors must be considered very early and throughout the system design

  10. Databases as an information service

    NASA Technical Reports Server (NTRS)

    Vincent, D. A.

    1983-01-01

    The relationship of databases to information services, and the range of information services users and their needs for information is explored and discussed. It is argued that for database information to be valuable to a broad range of users, it is essential that access methods be provided that are relatively unstructured and natural to information services users who are interested in the information contained in databases, but who are not willing to learn and use traditional structured query languages. Unless this ease of use of databases is considered in the design and application process, the potential benefits from using database systems may not be realized.

  11. Databases as an information service

    NASA Technical Reports Server (NTRS)

    Vincent, D. A.

    1983-01-01

    The relationship of databases to information services, and the range of information services users and their needs for information is explored and discussed. It is argued that for database information to be valuable to a broad range of users, it is essential that access methods be provided that are relatively unstructured and natural to information services users who are interested in the information contained in databases, but who are not willing to learn and use traditional structured query languages. Unless this ease of use of databases is considered in the design and application process, the potential benefits from using database systems may not be realized.

  12. Unified Database Development Program. Final Report.

    ERIC Educational Resources Information Center

    Thomas, Everett L., Jr.; Deem, Robert N.

    The objective of the unified database (UDB) program was to develop an automated information system that would be useful in the design, development, testing, and support of new Air Force aircraft weapon systems. Primary emphasis was on the development of: (1) a historical logistics data repository system to provide convenient and timely access to…

  13. Choosing the Right Database Management Program.

    ERIC Educational Resources Information Center

    Vockell, Edward L.; Kopenec, Donald

    1989-01-01

    Provides a comparison of four database management programs commonly used in schools: AppleWorks, the DOS 3.3 and ProDOS versions of PFS, and MECC's Data Handler. Topics discussed include information storage, spelling checkers, editing functions, search strategies, graphs, printout formats, library applications, and HyperCard. (LRW)

  14. Chesapeake Bay Program Water Quality Database

    EPA Pesticide Factsheets

    The Chesapeake Information Management System (CIMS), designed in 1996, is an integrated, accessible information management system for the Chesapeake Bay Region. CIMS is an organized, distributed library of information and software tools designed to increase basin-wide public access to Chesapeake Bay information. The information delivered by CIMS includes technical and public information, educational material, environmental indicators, policy documents, and scientific data. Through the use of relational databases, web-based programming, and web-based GIS a large number of Internet resources have been established. These resources include multiple distributed on-line databases, on-demand graphing and mapping of environmental data, and geographic searching tools for environmental information. Baseline monitoring data, summarized data and environmental indicators that document ecosystem status and trends, confirm linkages between water quality, habitat quality and abundance, and the distribution and integrity of biological populations are also available. One of the major features of the CIMS network is the Chesapeake Bay Program's Data Hub, providing users access to a suite of long- term water quality and living resources databases. Chesapeake Bay mainstem and tidal tributary water quality, benthic macroinvertebrates, toxics, plankton, and fluorescence data can be obtained for a network of over 800 monitoring stations.

  15. Integrated Primary Care Information Database (IPCI)

    Cancer.gov

    The Integrated Primary Care Information Database is a longitudinal observational database that was created specifically for pharmacoepidemiological and pharmacoeconomic studies, inlcuding data from computer-based patient records supplied voluntarily by general practitioners.

  16. Database Systems. Course Three. Information Systems Curriculum.

    ERIC Educational Resources Information Center

    O'Neil, Sharon Lund; Everett, Donna R.

    This course is the third of seven in the Information Systems curriculum. The purpose of the course is to familiarize students with database management concepts and standard database management software. Databases and their roles, advantages, and limitations are explained. An overview of the course sets forth the condition and performance standard…

  17. Information Literacy Skills: Comparing and Evaluating Databases

    ERIC Educational Resources Information Center

    Grismore, Brian A.

    2012-01-01

    The purpose of this database comparison is to express the importance of teaching information literacy skills and to apply those skills to commonly used Internet-based research tools. This paper includes a comparison and evaluation of three databases (ProQuest, ERIC, and Google Scholar). It includes strengths and weaknesses of each database based…

  18. Information Technology and an Educational Broadcasting Database.

    ERIC Educational Resources Information Center

    McAleese, R.; Duncan, E. B.

    1985-01-01

    Explains the link between educational broadcasting and information technology. Some aspects of knowledge organization for information retrieval are explored and illustrated with reference to the University of Aberdeen's Educational Broadcasting Database. A pilot exercise includes communication of user-selected data from the database to…

  19. TWRS information locator database system design description

    SciTech Connect

    Knutson, B.J.

    1996-09-13

    This document gives an overview and description of the Tank Waste Remediation System (TWRS) Information Locator Database (ILD)system design. The TWRS ILD system is an inventory of information used in the TWRS Systems Engineering process to represent the TWRS Technical Baseline. The inventory is maintained in the form of a relational database developed in Paradox 4.5.

  20. An Improved Database System for Program Assessment

    ERIC Educational Resources Information Center

    Haga, Wayne; Morris, Gerard; Morrell, Joseph S.

    2011-01-01

    This research paper presents a database management system for tracking course assessment data and reporting related outcomes for program assessment. It improves on a database system previously presented by the authors and in use for two years. The database system presented is specific to assessment for ABET (Accreditation Board for Engineering and…

  1. COINS: A composites information database system

    NASA Technical Reports Server (NTRS)

    Siddiqi, Shahid; Vosteen, Louis F.; Edlow, Ralph; Kwa, Teck-Seng

    1992-01-01

    An automated data abstraction form (ADAF) was developed to collect information on advanced fabrication processes and their related costs. The information will be collected for all components being fabricated as part of the ACT program and include in a COmposites INformation System (COINS) database. The aim of the COINS development effort is to provide future airframe preliminary design and fabrication teams with a tool through which production cost can become a deterministic variable in the design optimization process. The effort was initiated by the Structures Technology Program Office (STPO) of the NASA LaRC to implement the recommendations of a working group comprised of representatives from the commercial airframe companies. The principal working group recommendation was to re-institute collection of composite part fabrication data in a format similar to the DOD/NASA Structural Composites Fabrication Guide. The fabrication information collection form was automated with current user friendly computer technology. This work in progress paper describes the new automated form and features that make the form easy to use by an aircraft structural design-manufacturing team.

  2. Network Configuration of Oracle and Database Programming Using SQL

    NASA Technical Reports Server (NTRS)

    Davis, Melton; Abdurrashid, Jibril; Diaz, Philip; Harris, W. C.

    2000-01-01

    A database can be defined as a collection of information organized in such a way that it can be retrieved and used. A database management system (DBMS) can further be defined as the tool that enables us to manage and interact with the database. The Oracle 8 Server is a state-of-the-art information management environment. It is a repository for very large amounts of data, and gives users rapid access to that data. The Oracle 8 Server allows for sharing of data between applications; the information is stored in one place and used by many systems. My research will focus primarily on SQL (Structured Query Language) programming. SQL is the way you define and manipulate data in Oracle's relational database. SQL is the industry standard adopted by all database vendors. When programming with SQL, you work on sets of data (i.e., information is not processed one record at a time).

  3. Network Configuration of Oracle and Database Programming Using SQL

    NASA Technical Reports Server (NTRS)

    Davis, Melton; Abdurrashid, Jibril; Diaz, Philip; Harris, W. C.

    2000-01-01

    A database can be defined as a collection of information organized in such a way that it can be retrieved and used. A database management system (DBMS) can further be defined as the tool that enables us to manage and interact with the database. The Oracle 8 Server is a state-of-the-art information management environment. It is a repository for very large amounts of data, and gives users rapid access to that data. The Oracle 8 Server allows for sharing of data between applications; the information is stored in one place and used by many systems. My research will focus primarily on SQL (Structured Query Language) programming. SQL is the way you define and manipulate data in Oracle's relational database. SQL is the industry standard adopted by all database vendors. When programming with SQL, you work on sets of data (i.e., information is not processed one record at a time).

  4. Acquisition of Language Information from Online Databases

    NASA Astrophysics Data System (ADS)

    Sano, Hikomaro

    This report describes the methods to acquire language information from online databases, which are usually employed to retrieve technical information. Typical uses are shown to obtain equivalent foreign words, language usages, illustrative sentences and statistical linguistic data, by use of JOIS, DIALOG, SDC and BRS online information systems. In comparison with dictionaries and usage books, the online databases provide a vast file of language information, which is unabridged, continually updated and accessible through any words or their combinations. In addition, they give quantitative data such as frequencies in use of words and expressions.

  5. HANFORD NUCLEAR CRITICALITY SAFETY PROGRAM DATABASE

    SciTech Connect

    TOFFER, H.

    2005-05-02

    The Hanford Database is a useful information retrieval tool for a criticality safety practitioner. The database contains nuclear criticality literature screened for parameter studies. The entries, characterized with a value index, are segregated into 16 major and six minor categories. A majority of the screened entries have abstracts and a limited number are connected to the Office of Scientific and Technology Information (OSTI) database of full-size documents. Simple and complex searches of the data can be accomplished very rapidly and the end-product of the searches could be a full-size document. The paper contains a description of the database, user instructions, and a number of examples.

  6. Programming database tools for the casual user

    SciTech Connect

    Katz, R.A; Griffiths, C.

    1990-01-01

    The AGS Distributed Control System (AGSDCS) uses a relational database management system (INTERBASE) for the storage of all data associated with the control of the particle accelerator complex. This includes the static data which describes the component devices of the complex, as well as data for application program startup and data records that are used in analysis. Due to licensing restraints, it was necessary to develop tools to allow programs requiring access to a database to be unconcerned whether or not they were running on a licensed node. An in-house database server program was written, using Apollo mailbox communication protocols, allowing application programs via calls to this server to access the interbase database. Initially, the tools used by the server to actually access the database were written using the GDML C host language interface. Through the evolutionary learning process these tools have been converted to Dynamic SQL. Additionally, these tools have been extracted from the exclusive province of the database server and placed in their own library. This enables application programs to use these same tools on a licensed node without using the database server and without having to modify the application code. The syntax of the C calls remain the same.

  7. DOE technology information management system database study report

    SciTech Connect

    Widing, M.A.; Blodgett, D.W.; Braun, M.D.; Jusko, M.J.; Keisler, J.M.; Love, R.J.; Robinson, G.L.

    1994-11-01

    To support the missions of the US Department of Energy (DOE) Special Technologies Program, Argonne National Laboratory is defining the requirements for an automated software system that will search electronic databases on technology. This report examines the work done and results to date. Argonne studied existing commercial and government sources of technology databases in five general areas: on-line services, patent database sources, government sources, aerospace technology sources, and general technology sources. First, it conducted a preliminary investigation of these sources to obtain information on the content, cost, frequency of updates, and other aspects of their databases. The Laboratory then performed detailed examinations of at least one source in each area. On this basis, Argonne recommended which databases should be incorporated in DOE`s Technology Information Management System.

  8. Applying GIS technology to the Regional Information Sharing Systems database

    NASA Astrophysics Data System (ADS)

    Aumond, Karen L.

    1997-02-01

    The Regional Information Sharing Systems (RISS) program was formed as a partnership for information exchange between the federal government and state and local law enforcement. The six regional projects provide member law enforcement agencies in all 50 states with a broad range of intelligence and investigative support services. Recently, the existing RISS databases were redesigned to allow for connectivity among projects and the capability of a nationwide search of over 450,000 suspects. This relational database of intelligence information, along with a photographic imaging system, an operational `critical event' database, and GIS mapping are integrated components of RISSNET. The Geographical-Regional Information Sharing System (G-RISS) application is being prototypes by Graphic Data Systems Corporation at one RISS site, the Western States Information Network in Sacramento, California. G-RISS is a tool that will combine information from various law enforcement resources, map criminal activities to detect trends and assist agencies by being proactive to combat these activities.

  9. Nuclear Criticality Information System. Database examples

    SciTech Connect

    Foret, C.A.

    1984-06-01

    The purpose of this publication is to provide our users with a guide to using the Nuclear Criticality Information System (NCIS). It is comprised of an introduction, an information and resources section, a how-to-use section, and several useful appendices. The main objective of this report is to present a clear picture of the NCIS project and its available resources as well as assisting our users in accessing the database and using the TIS computer to process data. The introduction gives a brief description of the NCIS project, the Technology Information System (TIS), online user information, future plans and lists individuals to contact for additional information about the NCIS project. The information and resources section outlines the NCIS database and describes the resources that are available. The how-to-use section illustrates access to the NCIS database as well as searching datafiles for general or specific data. It also shows how to access and read the NCIS news section as well as connecting to other information centers through the TIS computer.

  10. The NSO FTS database program and archive (FTSDBM)

    NASA Technical Reports Server (NTRS)

    Lytle, D. M.

    1992-01-01

    Data from the NSO Fourier transform spectrometer is being re-archived from half inch tape onto write-once compact disk. In the process, information about each spectrum and a low resolution copy of each spectrum is being saved into an on-line database. FTSDBM is a simple database management program in the NSO external package for IRAF. A command language allows the FTSDBM user to add entries to the database, delete entries, select subsets from the database based on keyword values including ranges of values, create new database files based on these subsets, make keyword lists, examine low resolution spectra graphically, and make disk number/file number lists. Once the archive is complete, FTSDBM will allow the database to be efficiently searched for data of interest to the user and the compact disk format will allow random access to that data.

  11. The NSO FTS Database Program and Archive (FTSDBM)

    NASA Astrophysics Data System (ADS)

    Lytle, D. M.

    1993-01-01

    Data from the NSO Fourier transform spectrometer is being re-archived from half inch tape onto write-once compact disk. In the process, information about each spectrum and a low resolution copy of each spectrum is being saved into an on-line database. FTSDBM is a simple database management program in the NSO external package for IRAF. A command language allows the FTSDBM user to add entries to the database, delete entries, select subsets from the database based on keyword values including ranges of values, create new database files based on these subsets, make keyword lists, examine low resolution spectra graphically, and make disk number/file number lists. Once the archive is complete, FTSDBM will allow the database to be efficiently searched for data of interest to the user and the compact disk format will allow random access to these data.

  12. Olympic Information in the SPORT Database.

    ERIC Educational Resources Information Center

    Belna, Alison M.; And Others

    1984-01-01

    Profiles the SPORT database, produced by Sport Information Resource Centre, Ottawa, Ontario, which provides extensive coverage of individual sports including practice, training and equipment, recreation, sports medicine, physical education, sport facilities, and international sport history. Olympic coverage in SPORT, sports sciences, online…

  13. Olympic Information in the SPORT Database.

    ERIC Educational Resources Information Center

    Belna, Alison M.; And Others

    1984-01-01

    Profiles the SPORT database, produced by Sport Information Resource Centre, Ottawa, Ontario, which provides extensive coverage of individual sports including practice, training and equipment, recreation, sports medicine, physical education, sport facilities, and international sport history. Olympic coverage in SPORT, sports sciences, online…

  14. An information model based weld schedule database

    SciTech Connect

    Kleban, S.D.; Knorovsky, G.A.; Hicken, G.K.; Gershanok, G.A.

    1997-08-01

    As part of a computerized system (SmartWeld) developed at Sandia National Laboratories to facilitate agile manufacturing of welded assemblies, a weld schedule database (WSDB) was also developed. SmartWeld`s overall goals are to shorten the design-to-product time frame and to promote right-the-first-time weldment design and manufacture by providing welding process selection guidance to component designers. The associated WSDB evolved into a substantial subproject by itself. At first, it was thought that the database would store perhaps 50 parameters about a weld schedule. This was a woeful underestimate: the current WSDB has over 500 parameters defined in 73 tables. This includes data bout the weld, the piece parts involved, the piece part geometry, and great detail about the schedule and intervals involved in performing the weld. This complex database was built using information modeling techniques. Information modeling is a process that creates a model of objects and their roles for a given domain (i.e. welding). The Natural-Language Information Analysis methodology (NIAM) technique was used, which is characterized by: (1) elementary facts being stated in natural language by the welding expert, (2) determinism (the resulting model is provably repeatable, i.e. it gives the same answer every time), and (3) extensibility (the model can be added to without changing existing structure). The information model produced a highly normalized relational schema that was translated to Oracle{trademark} Relational Database Management Systems for implementation.

  15. 75 FR 4827 - Submission for OMB Review; Comment Request Clinical Trials Reporting Program (CTRP) Database (NCI)

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-29

    ... Reporting Program (CTRP) Database (NCI) Summary: Under the provisions of Section 3507(a)(1)(D) of the... Program (CTRP) Database. Type of Information Collection Request: REVISION of currently approved collection... developing an electronic resource, the NCI Clinical Trials Reporting Program (CTRP) Database, to serve as...

  16. CHID: a unique health information and education database.

    PubMed

    Lunin, L F; Stein, R S

    1987-04-01

    The public's growing interest in health information and the health professions' increasing need to locate health education materials can be answered in part by the new Combined Health Information Database (CHID). This unique database focuses on materials and programs in professional and patient education, general health education, and community risk reduction. Accessible through BRS, CHID suggests sources for procuring brochures, pamphlets, articles, and films on community services, programs at HMOs and hospitals, aspects of coping, and more. CHID is a joint project of six federally funded agencies in the Public Health Service. CHID provides citations with abstracts to major health journals, books, reports, pamphlets, hard-to-find information resources, and to health education programs under way in state and local health departments and other locations.

  17. The Eruption Forecasting Information System (EFIS) database project

    NASA Astrophysics Data System (ADS)

    Ogburn, Sarah; Harpel, Chris; Pesicek, Jeremy; Wellik, Jay; Pallister, John; Wright, Heather

    2016-04-01

    The Eruption Forecasting Information System (EFIS) project is a new initiative of the U.S. Geological Survey-USAID Volcano Disaster Assistance Program (VDAP) with the goal of enhancing VDAP's ability to forecast the outcome of volcanic unrest. The EFIS project seeks to: (1) Move away from relying on the collective memory to probability estimation using databases (2) Create databases useful for pattern recognition and for answering common VDAP questions; e.g. how commonly does unrest lead to eruption? how commonly do phreatic eruptions portend magmatic eruptions and what is the range of antecedence times? (3) Create generic probabilistic event trees using global data for different volcano 'types' (4) Create background, volcano-specific, probabilistic event trees for frequently active or particularly hazardous volcanoes in advance of a crisis (5) Quantify and communicate uncertainty in probabilities A major component of the project is the global EFIS relational database, which contains multiple modules designed to aid in the construction of probabilistic event trees and to answer common questions that arise during volcanic crises. The primary module contains chronologies of volcanic unrest, including the timing of phreatic eruptions, column heights, eruptive products, etc. and will be initially populated using chronicles of eruptive activity from Alaskan volcanic eruptions in the GeoDIVA database (Cameron et al. 2013). This database module allows us to query across other global databases such as the WOVOdat database of monitoring data and the Smithsonian Institution's Global Volcanism Program (GVP) database of eruptive histories and volcano information. The EFIS database is in the early stages of development and population; thus, this contribution also serves as a request for feedback from the community.

  18. Database resources of the National Center for Biotechnology Information.

    PubMed

    2015-01-01

    The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank(®) nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. Additional NCBI resources focus on literature (Bookshelf, PubMed Central (PMC) and PubReader); medical genetics (ClinVar, dbMHC, the Genetic Testing Registry, HIV-1/Human Protein Interaction Database and MedGen); genes and genomics (BioProject, BioSample, dbSNP, dbVar, Epigenomics, Gene, Gene Expression Omnibus (GEO), Genome, HomoloGene, the Map Viewer, Nucleotide, PopSet, Probe, RefSeq, Sequence Read Archive, the Taxonomy Browser, Trace Archive and UniGene); and proteins and chemicals (Biosystems, COBALT, the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), the Molecular Modeling Database (MMDB), Protein Clusters, Protein and the PubChem suite of small molecule databases). The Entrez system provides search and retrieval operations for many of these databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov.

  19. Database resources of the National Center for Biotechnology Information.

    PubMed

    2016-01-04

    The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank(®) nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. Additional NCBI resources focus on literature (PubMed Central (PMC), Bookshelf and PubReader), health (ClinVar, dbGaP, dbMHC, the Genetic Testing Registry, HIV-1/Human Protein Interaction Database and MedGen), genomes (BioProject, Assembly, Genome, BioSample, dbSNP, dbVar, Epigenomics, the Map Viewer, Nucleotide, Probe, RefSeq, Sequence Read Archive, the Taxonomy Browser and the Trace Archive), genes (Gene, Gene Expression Omnibus (GEO), HomoloGene, PopSet and UniGene), proteins (Protein, the Conserved Domain Database (CDD), COBALT, Conserved Domain Architecture Retrieval Tool (CDART), the Molecular Modeling Database (MMDB) and Protein Clusters) and chemicals (Biosystems and the PubChem suite of small molecule databases). The Entrez system provides search and retrieval operations for most of these databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. Published by Oxford University Press on behalf of Nucleic Acids Research 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

  20. Database resources of the National Center for Biotechnology Information

    PubMed Central

    2016-01-01

    The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. Additional NCBI resources focus on literature (PubMed Central (PMC), Bookshelf and PubReader), health (ClinVar, dbGaP, dbMHC, the Genetic Testing Registry, HIV-1/Human Protein Interaction Database and MedGen), genomes (BioProject, Assembly, Genome, BioSample, dbSNP, dbVar, Epigenomics, the Map Viewer, Nucleotide, Probe, RefSeq, Sequence Read Archive, the Taxonomy Browser and the Trace Archive), genes (Gene, Gene Expression Omnibus (GEO), HomoloGene, PopSet and UniGene), proteins (Protein, the Conserved Domain Database (CDD), COBALT, Conserved Domain Architecture Retrieval Tool (CDART), the Molecular Modeling Database (MMDB) and Protein Clusters) and chemicals (Biosystems and the PubChem suite of small molecule databases). The Entrez system provides search and retrieval operations for most of these databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:26615191

  1. Database resources of the National Center for Biotechnology Information

    PubMed Central

    2015-01-01

    The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. Additional NCBI resources focus on literature (Bookshelf, PubMed Central (PMC) and PubReader); medical genetics (ClinVar, dbMHC, the Genetic Testing Registry, HIV-1/Human Protein Interaction Database and MedGen); genes and genomics (BioProject, BioSample, dbSNP, dbVar, Epigenomics, Gene, Gene Expression Omnibus (GEO), Genome, HomoloGene, the Map Viewer, Nucleotide, PopSet, Probe, RefSeq, Sequence Read Archive, the Taxonomy Browser, Trace Archive and UniGene); and proteins and chemicals (Biosystems, COBALT, the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), the Molecular Modeling Database (MMDB), Protein Clusters, Protein and the PubChem suite of small molecule databases). The Entrez system provides search and retrieval operations for many of these databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov. PMID:25398906

  2. An overview on biodiversity information in databases.

    PubMed

    Shanmughavel, Piramanayagam

    2007-03-27

    The massive development of biodiversity related information systems over the WWW (World Wide Web) has created much excitement in recent years. These arrays of new data sources are counterbalanced by the difficulty in knowing their location and nature. However, biologists and computer scientists have started to pull together in a rising tide of coherence and organization to address this issue. The fledging field of biodiversity informatics is expected to deliver major advances that could turn the WWW into a giant global biodiversity information system. The present paper briefly reviews the databases in preserving the biodiversity data.

  3. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Wheeler, David L.; Barrett, Tanya; Benson, Dennis A.; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Feolo, Michael; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Khovayko, Oleg; Landsman, David; Lipman, David J.; Madden, Thomas L.; Maglott, Donna R.; Miller, Vadim; Ostell, James; Pruitt, Kim D.; Schuler, Gregory D.; Shumway, Martin; Sequeira, Edwin; Sherry, Steven T.; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusov, Roman L.; Tatusova, Tatiana A.; Wagner, Lukas; Yaschenko, Eugene

    2008-01-01

    In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data available through NCBI's web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace, Assembly, and Short Read Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Database of Genotype and Phenotype, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool and the PubChem suite of small molecule databases. Augmenting the web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:18045790

  4. Database resources of the National Center for Biotechnology Information.

    PubMed

    Wheeler, David L; Barrett, Tanya; Benson, Dennis A; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; Dicuccio, Michael; Edgar, Ron; Federhen, Scott; Feolo, Michael; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Khovayko, Oleg; Landsman, David; Lipman, David J; Madden, Thomas L; Maglott, Donna R; Miller, Vadim; Ostell, James; Pruitt, Kim D; Schuler, Gregory D; Shumway, Martin; Sequeira, Edwin; Sherry, Steven T; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusov, Roman L; Tatusova, Tatiana A; Wagner, Lukas; Yaschenko, Eugene

    2008-01-01

    In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data available through NCBI's web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace, Assembly, and Short Read Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Database of Genotype and Phenotype, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool and the PubChem suite of small molecule databases. Augmenting the web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  5. Advanced information technology: Building stronger databases

    SciTech Connect

    Price, D.

    1994-12-01

    This paper discusses the attributes of the Advanced Information Technology (AIT) tool set, a database application builder designed at the Lawrence Livermore National Laboratory. AIT consists of a C library and several utilities that provide referential integrity across a database, interactive menu and field level help, and a code generator for building tightly controlled data entry support. AIT also provides for dynamic menu trees, report generation support, and creation of user groups. Composition of the library and utilities is discussed, along with relative strengths and weaknesses. In addition, an instantiation of the AIT tool set is presented using a specific application. Conclusions about the future and value of the tool set are then drawn based on the use of the tool set with that specific application.

  6. Consolidated Environmental Resource Database Information Process (CERDIP)

    DTIC Science & Technology

    2015-11-19

    Approved OMB No. 0704-0188 Public reporting burden for this collection of information is estimated to average 1 hour per response, including the...Arlington, VA 22202-4302, and to the Office of Management and Budget, Paperwork Reduction Project (0704-0188), Washington, DC 20503. 1. AGENCY USE...Building 211 Fort Belvoir, VA 22060-5527 Program Manager : Mr. Erik Hangeland, NDCEE Program Manager , 410-436-6986 10. SPONSORING/MONITORING

  7. A description of the Global Resources Information Database

    NASA Technical Reports Server (NTRS)

    Vermillion, Charles H.; Hebin, O.; Kroze, H.

    1990-01-01

    This paper describes the Global Resources Information Database (GRID), which is part of the Global Environmental Monitoring (GEM) Program. The following four objectives were established for GRID: (1) to collect and disseminate geographical information; (2) to construct within developing countries a geographical information system (GIS); (3) to demonstrate the ability of GIS to fuse global and national data sets for resource and environment management and planning at the national level; and (4) to train individuals from developing countries in remote sensing technology. The activities of GRID are coordinated at the GEM center at Nairobi (Kenya).

  8. A description of the Global Resources Information Database

    NASA Technical Reports Server (NTRS)

    Vermillion, Charles H.; Hebin, O.; Kroze, H.

    1990-01-01

    This paper describes the Global Resources Information Database (GRID), which is part of the Global Environmental Monitoring (GEM) Program. The following four objectives were established for GRID: (1) to collect and disseminate geographical information; (2) to construct within developing countries a geographical information system (GIS); (3) to demonstrate the ability of GIS to fuse global and national data sets for resource and environment management and planning at the national level; and (4) to train individuals from developing countries in remote sensing technology. The activities of GRID are coordinated at the GEM center at Nairobi (Kenya).

  9. Database resources of the National Center for Biotechnology Information.

    PubMed

    Wheeler, David L; Barrett, Tanya; Benson, Dennis A; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Kenton, David L; Khovayko, Oleg; Lipman, David J; Madden, Thomas L; Maglott, Donna R; Ostell, James; Pruitt, Kim D; Schuler, Gregory D; Schriml, Lynn M; Sequeira, Edwin; Sherry, Stephen T; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Suzek, Tugba O; Tatusov, Roman; Tatusova, Tatiana A; Wagner, Lukas; Yaschenko, Eugene

    2006-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups, Retroviral Genotyping Tools, HIV-1, Human Protein Interaction Database, SAGEmap, Gene Expression Omnibus, Entrez Probe, GENSAT, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih.gov.

  10. Database resources of the National Center for Biotechnology Information.

    PubMed

    Sayers, Eric W; Barrett, Tanya; Benson, Dennis A; Bolton, Evan; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; DiCuccio, Michael; Federhen, Scott; Feolo, Michael; Fingerman, Ian M; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J; Lu, Zhiyong; Madden, Thomas L; Madej, Tom; Maglott, Donna R; Marchler-Bauer, Aron; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Phan, Lon; Pruitt, Kim D; Schuler, Gregory D; Sequeira, Edwin; Sherry, Stephen T; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A; Wagner, Lukas; Wang, Yanli; Wilbur, W John; Yaschenko, Eugene; Ye, Jian

    2011-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central (PMC), Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Electronic PCR, OrfFinder, Splign, ProSplign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), IBIS, Biosystems, Peptidome, OMSSA, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  11. Database resources of the National Center for Biotechnology Information.

    PubMed

    Sayers, Eric W; Barrett, Tanya; Benson, Dennis A; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Feolo, Michael; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J; Madden, Thomas L; Maglott, Donna R; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Pruitt, Kim D; Schuler, Gregory D; Sequeira, Edwin; Sherry, Stephen T; Shumway, Martin; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A; Wagner, Lukas; Yaschenko, Eugene; Ye, Jian

    2009-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART) and the PubChem suite of small molecule databases. Augmenting many of the web applications is custom implementation of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  12. Database resources of the National Center for Biotechnology Information.

    PubMed

    Sayers, Eric W; Barrett, Tanya; Benson, Dennis A; Bolton, Evan; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; Dicuccio, Michael; Federhen, Scott; Feolo, Michael; Fingerman, Ian M; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Krasnov, Sergey; Landsman, David; Lipman, David J; Lu, Zhiyong; Madden, Thomas L; Madej, Tom; Maglott, Donna R; Marchler-Bauer, Aron; Miller, Vadim; Karsch-Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Phan, Lon; Pruitt, Kim D; Schuler, Gregory D; Sequeira, Edwin; Sherry, Stephen T; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A; Wagner, Lukas; Wang, Yanli; Wilbur, W John; Yaschenko, Eugene; Ye, Jian

    2012-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Website. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central (PMC), Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, Genome and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Probe, Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  13. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Wheeler, David L.; Barrett, Tanya; Benson, Dennis A.; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Kenton, David L.; Khovayko, Oleg; Lipman, David J.; Madden, Thomas L.; Maglott, Donna R.; Ostell, James; Pruitt, Kim D.; Schuler, Gregory D.; Schriml, Lynn M.; Sequeira, Edwin; Sherry, Stephen T.; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Suzek, Tugba O.; Tatusov, Roman; Tatusova, Tatiana A.; Wagner, Lukas; Yaschenko, Eugene

    2006-01-01

    In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups, Retroviral Genotyping Tools, HIV-1, Human Protein Interaction Database, SAGEmap, Gene Expression Omnibus, Entrez Probe, GENSAT, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of the resources can be accessed through the NCBI home page at: . PMID:16381840

  14. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Sayers, Eric W.; Barrett, Tanya; Benson, Dennis A.; Bolton, Evan; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Federhen, Scott; Feolo, Michael; Fingerman, Ian M.; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J.; Lu, Zhiyong; Madden, Thomas L.; Madej, Tom; Maglott, Donna R.; Marchler-Bauer, Aron; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Phan, Lon; Pruitt, Kim D.; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Stephen T.; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A.; Wagner, Lukas; Wang, Yanli; Wilbur, W. John; Yaschenko, Eugene; Ye, Jian

    2011-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central (PMC), Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Electronic PCR, OrfFinder, Splign, ProSplign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), IBIS, Biosystems, Peptidome, OMSSA, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:21097890

  15. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Sayers, Eric W.; Barrett, Tanya; Benson, Dennis A.; Bolton, Evan; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Federhen, Scott; Feolo, Michael; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J.; Lu, Zhiyong; Madden, Thomas L.; Madej, Tom; Maglott, Donna R.; Marchler-Bauer, Aron; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Pruitt, Kim D.; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Stephen T.; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A.; Wagner, Lukas; Wang, Yanli; John Wilbur, W.; Yaschenko, Eugene; Ye, Jian

    2010-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, Reference Sequence, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Peptidome, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:19910364

  16. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Sayers, Eric W.; Barrett, Tanya; Benson, Dennis A.; Bolton, Evan; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Federhen, Scott; Feolo, Michael; Fingerman, Ian M.; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Krasnov, Sergey; Landsman, David; Lipman, David J.; Lu, Zhiyong; Madden, Thomas L.; Madej, Tom; Maglott, Donna R.; Marchler-Bauer, Aron; Miller, Vadim; Karsch-Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Phan, Lon; Pruitt, Kim D.; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Stephen T.; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A.; Wagner, Lukas; Wang, Yanli; Wilbur, W. John; Yaschenko, Eugene; Ye, Jian

    2012-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Website. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central (PMC), Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, Genome and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Probe, Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:22140104

  17. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Sayers, Eric W.; Barrett, Tanya; Benson, Dennis A.; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Feolo, Michael; Geer, Lewis Y.; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J.; Madden, Thomas L.; Maglott, Donna R.; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Pruitt, Kim D.; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Stephen T.; Shumway, Martin; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A.; Wagner, Lukas; Yaschenko, Eugene; Ye, Jian

    2009-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART) and the PubChem suite of small molecule databases. Augmenting many of the web applications is custom implementation of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:18940862

  18. Database resources of the National Center for Biotechnology Information.

    PubMed

    2014-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, PubReader, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Primer-BLAST, COBALT, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the Map Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, ClinVar, MedGen, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Probe, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All these resources can be accessed through the NCBI home page.

  19. Database resources of the National Center for Biotechnology Information.

    PubMed

    2013-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Probe, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page.

  20. Database resources of the National Center for Biotechnology Information

    PubMed Central

    2013-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Primer-BLAST, COBALT, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Probe, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page. PMID:23193264

  1. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Acland, Abigail; Agarwala, Richa; Barrett, Tanya; Beck, Jeff; Benson, Dennis A.; Bollin, Colleen; Bolton, Evan; Bryant, Stephen H.; Canese, Kathi; Church, Deanna M.; Clark, Karen; DiCuccio, Michael; Dondoshansky, Ilya; Federhen, Scott; Feolo, Michael; Geer, Lewis Y.; Gorelenkov, Viatcheslav; Hoeppner, Marilu; Johnson, Mark; Kelly, Christopher; Khotomlianski, Viatcheslav; Kimchi, Avi; Kimelman, Michael; Kitts, Paul; Krasnov, Sergey; Kuznetsov, Anatoliy; Landsman, David; Lipman, David J.; Lu, Zhiyong; Madden, Thomas L.; Madej, Tom; Maglott, Donna R.; Marchler-Bauer, Aron; Karsch-Mizrachi, Ilene; Murphy, Terence; Ostell, James; O'Sullivan, Christopher; Panchenko, Anna; Phan, Lon; Pruitt, Don Preussm Kim D.; Rubinstein, Wendy; Sayers, Eric W.; Schneider, Valerie; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Stephen T.; Shumway, Martin; Sirotkin, Karl; Siyan, Karanjit; Slotta, Douglas; Soboleva, Alexandra; Soussov, Vladimir; Starchenko, Grigory; Tatusova, Tatiana A.; Trawick, Bart W.; Vakatov, Denis; Wang, Yanli; Ward, Minghong; John Wilbur, W.; Yaschenko, Eugene; Zbicz, Kerry

    2014-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI Web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, PubReader, Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Primer-BLAST, COBALT, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, dbVar, Epigenomics, the Genetic Testing Registry, Genome and related tools, the Map Viewer, Trace Archive, Sequence Read Archive, BioProject, BioSample, ClinVar, MedGen, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Probe, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All these resources can be accessed through the NCBI home page. PMID:24259429

  2. Database resources of the National Center for Biotechnology Information.

    PubMed

    Wheeler, David L; Barrett, Tanya; Benson, Dennis A; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Geer, Lewis Y; Kapustin, Yuri; Khovayko, Oleg; Landsman, David; Lipman, David J; Madden, Thomas L; Maglott, Donna R; Ostell, James; Miller, Vadim; Pruitt, Kim D; Schuler, Gregory D; Sequeira, Edwin; Sherry, Steven T; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusov, Roman L; Tatusova, Tatiana A; Wagner, Lukas; Yaschenko, Eugene

    2007-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link(BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace and Assembly Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Viral Genotyping Tools, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART) and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  3. Database resources of the National Center for Biotechnology Information.

    PubMed

    Sayers, Eric W; Barrett, Tanya; Benson, Dennis A; Bolton, Evan; Bryant, Stephen H; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M; Dicuccio, Michael; Federhen, Scott; Feolo, Michael; Geer, Lewis Y; Helmberg, Wolfgang; Kapustin, Yuri; Landsman, David; Lipman, David J; Lu, Zhiyong; Madden, Thomas L; Madej, Tom; Maglott, Donna R; Marchler-Bauer, Aron; Miller, Vadim; Mizrachi, Ilene; Ostell, James; Panchenko, Anna; Pruitt, Kim D; Schuler, Gregory D; Sequeira, Edwin; Sherry, Stephen T; Shumway, Martin; Sirotkin, Karl; Slotta, Douglas; Souvorov, Alexandre; Starchenko, Grigory; Tatusova, Tatiana A; Wagner, Lukas; Wang, Yanli; John Wilbur, W; Yaschenko, Eugene; Ye, Jian

    2010-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, Reference Sequence, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Peptidome, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

  4. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Wheeler, David L.; Barrett, Tanya; Benson, Dennis A.; Bryant, Stephen H.; Canese, Kathi; Chetvernin, Vyacheslav; Church, Deanna M.; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Geer, Lewis Y.; Kapustin, Yuri; Khovayko, Oleg; Landsman, David; Lipman, David J.; Madden, Thomas L.; Maglott, Donna R.; Ostell, James; Miller, Vadim; Pruitt, Kim D.; Schuler, Gregory D.; Sequeira, Edwin; Sherry, Steven T.; Sirotkin, Karl; Souvorov, Alexandre; Starchenko, Grigory; Tatusov, Roman L.; Tatusova, Tatiana A.; Wagner, Lukas; Yaschenko, Eugene

    2007-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link(BLink), Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace and Assembly Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Viral Genotyping Tools, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus (GEO), Entrez Probe, GENSAT, Online Mendelian Inheritance in Man (OMIM), Online Mendelian Inheritance in Animals (OMIA), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART) and the PubChem suite of small molecule databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at . PMID:17170002

  5. Recruitment and Information Program

    ERIC Educational Resources Information Center

    Liebergott, Harvey

    1976-01-01

    The Bureau of Education for the Handicapped's Recruitment and Information Program provides parents and other interested individuals with information on the educational needs of handicapped children through such activities as the National Information Center for the Handicapped ("Closer Look"), pamphlets on various subjects, and media…

  6. ASEAN Mineral Database and Information System (AMDIS)

    NASA Astrophysics Data System (ADS)

    Okubo, Y.; Ohno, T.; Bandibas, J. C.; Wakita, K.; Oki, Y.; Takahashi, Y.

    2014-12-01

    AMDIS has lunched officially since the Fourth ASEAN Ministerial Meeting on Minerals on 28 November 2013. In cooperation with Geological Survey of Japan, the web-based GIS was developed using Free and Open Source Software (FOSS) and the Open Geospatial Consortium (OGC) standards. The system is composed of the local databases and the centralized GIS. The local databases created and updated using the centralized GIS are accessible from the portal site. The system introduces distinct advantages over traditional GIS. Those are a global reach, a large number of users, better cross-platform capability, charge free for users, charge free for provider, easy to use, and unified updates. Raising transparency of mineral information to mining companies and to the public, AMDIS shows that mineral resources are abundant throughout the ASEAN region; however, there are many datum vacancies. We understand that such problems occur because of insufficient governance of mineral resources. Mineral governance we refer to is a concept that enforces and maximizes the capacity and systems of government institutions that manages minerals sector. The elements of mineral governance include a) strengthening of information infrastructure facility, b) technological and legal capacities of state-owned mining companies to fully-engage with mining sponsors, c) government-led management of mining projects by supporting the project implementation units, d) government capacity in mineral management such as the control and monitoring of mining operations, and e) facilitation of regional and local development plans and its implementation with the private sector.

  7. Database Resources of the National Center for Biotechnology Information

    PubMed Central

    2017-01-01

    The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. The Entrez system provides search and retrieval operations for most of these data from 37 distinct databases. The E-utilities serve as the programming interface for the Entrez system. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. New resources released in the past year include iCn3D, MutaBind, and the Antimicrobial Resistance Gene Reference Database; and resources that were updated in the past year include My Bibliography, SciENcv, the Pathogen Detection Project, Assembly, Genome, the Genome Data Viewer, BLAST and PubChem. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov. PMID:27899561

  8. Southwest Exotic Mapping Program (SWEMP) Database, 2007

    USGS Publications Warehouse

    Thomas, Kathryn A.; Guertin, Patricia

    2017-01-01

    The Southwest Exotic Plant Mapping Program (SWEMP) is a collaborative effort between the United States Geological Survey and federal, tribal, state, county and non-governmental organization (NGO) partners in the southwest. This project is an ongoing effort to compile and distribute regional data on the occurrence of non-native invasive plants in the southwestern United States. The database represents the known sites (represented by a point location, i.e. site) of non-native invasive plant infestations within Arizona and New Mexico, and adjacent portions of California, Colorado, Nevada and Utah. These data, collected from 1911 to 2006, represent the field observations of various state, federal, tribal and county agencies, along with some specimen data from Herbaria. The SWEMP database comprises a compilation of data submitted through 2006.

  9. Copyright Program Information.

    ERIC Educational Resources Information Center

    National Center for Educational Communication (DHEW/OE), Washington, DC.

    The purpose of this publication is to provide information about the U.S. Office of Education (USOE) Copyright Program. It is a supplement to the Copyright Guidelines published in the Federal Register on May 9, 1970 (available as LI 002 914) and provides information primarily for those institutions and organizations which are developing educational…

  10. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Wheeler, David L.; Barrett, Tanya; Benson, Dennis A.; Bryant, Stephen H.; Canese, Kathi; Church, Deanna M.; DiCuccio, Michael; Edgar, Ron; Federhen, Scott; Helmberg, Wolfgang; Kenton, David L.; Khovayko, Oleg; Lipman, David J.; Madden, Thomas L.; Maglott, Donna R.; Ostell, James; Pontius, Joan U.; Pruitt, Kim D.; Schuler, Gregory D.; Schriml, Lynn M.; Sequeira, Edwin; Sherry, Steven T.; Sirotkin, Karl; Starchenko, Grigory; Suzek, Tugba O.; Tatusov, Roman; Tatusova, Tatiana A.; Wagner, Lukas; Yaschenko, Eugene

    2005-01-01

    In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data retrieval systems and computational resources for the analysis of data in GenBank and other biological data made available through NCBI's website. NCBI resources include Entrez, Entrez Programming Utilities, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups (COGs), Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheritance in Man (OMIM), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD) and the Conserved Domain Architecture Retrieval Tool (CDART). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized datasets. All of the resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov. PMID:15608222

  11. Database resources of the National Center for Biotechnology Information

    PubMed Central

    Wheeler, David L.; Church, Deanna M.; Lash, Alex E.; Leipe, Detlef D.; Madden, Thomas L.; Pontius, Joan U.; Schuler, Gregory D.; Schriml, Lynn M.; Tatusova, Tatiana A.; Wagner, Lukas; Rapp, Barbara A.

    2001-01-01

    In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources that operate on the data in GenBank and a variety of other biological data made available through NCBI’s Web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, HomoloGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing, Human MapViewer, GeneMap’99, Human–Mouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, Cancer Genome Anatomy Project (CGAP), SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheri­tance in Man (OMIM), the Molecular Modeling Database (MMDB) and the Conserved Domain Database (CDD). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih.gov. PMID:11125038

  12. The Eruption Forecasting Information System: Volcanic Eruption Forecasting Using Databases

    NASA Astrophysics Data System (ADS)

    Ogburn, S. E.; Harpel, C. J.; Pesicek, J. D.; Wellik, J.

    2016-12-01

    Forecasting eruptions, including the onset size, duration, location, and impacts, is vital for hazard assessment and risk mitigation. The Eruption Forecasting Information System (EFIS) project is a new initiative of the US Geological Survey-USAID Volcano Disaster Assistance Program (VDAP) and will advance VDAP's ability to forecast the outcome of volcanic unrest. The project supports probability estimation for eruption forecasting by creating databases useful for pattern recognition, identifying monitoring data thresholds beyond which eruptive probabilities increase, and for answering common forecasting questions. A major component of the project is a global relational database, which contains multiple modules designed to aid in the construction of probabilistic event trees and to answer common questions that arise during volcanic crises. The primary module contains chronologies of volcanic unrest. This module allows us to query eruption chronologies, monitoring data, descriptive information, operational data, and eruptive phases alongside other global databases, such as WOVOdat and the Global Volcanism Program. The EFIS database is in the early stages of development and population; thus, this contribution also is a request for feedback from the community. Preliminary data are already benefitting several research areas. For example, VDAP provided a forecast of the likely remaining eruption duration for Sinabung volcano, Indonesia, using global data taken from similar volcanoes in the DomeHaz database module, in combination with local monitoring time-series data. In addition, EFIS seismologists used a beta-statistic test and empirically-derived thresholds to identify distal volcano-tectonic earthquake anomalies preceding Alaska volcanic eruptions during 1990-2015 to retrospectively evaluate Alaska Volcano Observatory eruption precursors. This has identified important considerations for selecting analog volcanoes for global data analysis, such as differences between

  13. Information Access through Electronic Databases for Rural Public Libraries.

    ERIC Educational Resources Information Center

    Canepi, Kitti

    1997-01-01

    To compile a list of recommended electronic databases for rural libraries, public library patron questions received by the Arizona State Reference Center were searched on ten databases. The results indicated Books in Print, Magazine Database, ABI/INFORM, Public Affairs Information System (PAIS), and Government Printing Office (GPO) Publications…

  14. 47 CFR 69.120 - Line information database.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 3 2010-10-01 2010-10-01 false Line information database. 69.120 Section 69...) ACCESS CHARGES Computation of Charges § 69.120 Line information database. (a) A charge that is expressed... from a local exchange carrier database to recover the costs of: (1) The transmission facilities...

  15. 47 CFR 69.120 - Line information database.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 47 Telecommunication 3 2013-10-01 2013-10-01 false Line information database. 69.120 Section 69...) ACCESS CHARGES Computation of Charges § 69.120 Line information database. (a) A charge that is expressed... from a local exchange carrier database to recover the costs of: (1) The transmission facilities...

  16. 47 CFR 69.120 - Line information database.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 47 Telecommunication 3 2012-10-01 2012-10-01 false Line information database. 69.120 Section 69...) ACCESS CHARGES Computation of Charges § 69.120 Line information database. (a) A charge that is expressed... from a local exchange carrier database to recover the costs of: (1) The transmission facilities...

  17. 47 CFR 69.120 - Line information database.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 47 Telecommunication 3 2014-10-01 2014-10-01 false Line information database. 69.120 Section 69...) ACCESS CHARGES Computation of Charges § 69.120 Line information database. (a) A charge that is expressed... from a local exchange carrier database to recover the costs of: (1) The transmission facilities...

  18. 47 CFR 69.120 - Line information database.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 3 2011-10-01 2011-10-01 false Line information database. 69.120 Section 69...) ACCESS CHARGES Computation of Charges § 69.120 Line information database. (a) A charge that is expressed... from a local exchange carrier database to recover the costs of: (1) The transmission facilities...

  19. COINS: A composites information database system

    NASA Technical Reports Server (NTRS)

    Siddiqi, Shahid; Vosteen, Louis F.; Edlow, Ralph; Kwa, Teck-Seng

    1992-01-01

    An automated data abstraction form (ADAF) was developed to collect information on advanced fabrication processes and their related costs. The information will be collected for all components being fabricated as part of the Advanced Composite Technology (ACT) program and included in a COmposites INformation System (COINS) data base. The aim of the COINS development effort is to provide future airframe preliminary design and fabrication teams with a tool through which production cost can become a deterministic variable in the design optimization process. The effort was initiated by NASA Langley to implement the recommendations of a working group comprised of representatives from the commercial airframe companies. The principal working group recommendation was to reinstitute collection of composite part fabrication data in a format similar to the DOD/NASA Structural Composites Fabrication Guide. The fabrication information collection form was automated with current user friendly computer technology. The new automated form and features that make the form easy to use by an aircraft structural design manufacturing team are described.

  20. COINS: A composites information database system

    NASA Technical Reports Server (NTRS)

    Siddiqi, Shahid; Vosteen, Louis F.; Edlow, Ralph; Kwa, Teck-Seng

    1992-01-01

    An automated data abstraction form (ADAF) was developed to collect information on advanced fabrication processes and their related costs. The information will be collected for all components being fabricated as part of the Advanced Composite Technology (ACT) program and included in a COmposites INformation System (COINS) data base. The aim of the COINS development effort is to provide future airframe preliminary design and fabrication teams with a tool through which production cost can become a deterministic variable in the design optimization process. The effort was initiated by NASA Langley to implement the recommendations of a working group comprised of representatives from the commercial airframe companies. The principal working group recommendation was to reinstitute collection of composite part fabrication data in a format similar to the DOD/NASA Structural Composites Fabrication Guide. The fabrication information collection form was automated with current user friendly computer technology. The new automated form and features that make the form easy to use by an aircraft structural design manufacturing team are described.

  1. Cancer registration using case history database in hospital information system.

    PubMed

    Nose, Y; Akazawa, K; Watanabe, Y; Yokota, M; Okamura, S; Maehara, Y; Sugimachi, K

    1988-07-01

    The World Health Organization (WHO) recommendations for hospital cancer registration, although being effective for combating the disease, need heavy manpower for complete implementation. A computer-based method for cancer registration is in use at Kyushu University Hospital as part of the integrated hospital information system. This method needs no manpower for data gathering, and the database includes almost all the core data and half of optional data recommended for cancer registration by the WHO. This database can, therefore, be regarded as a file for hospital cancer registration, and is used for two applications. The prepared form is automatically completed for the regional cancer register by a computer program without involving any physicians' time. In addition, a decision support system for the protocol used for a patient with a cancer was developed. Trendtables and graphs of clinical examination and medication are displayed, with suggestions and warning for physicians to help them make clinical decisions.

  2. The eNanoMapper database for nanomaterial safety information.

    PubMed

    Jeliazkova, Nina; Chomenidis, Charalampos; Doganis, Philip; Fadeel, Bengt; Grafström, Roland; Hardy, Barry; Hastings, Janna; Hegi, Markus; Jeliazkov, Vedrin; Kochev, Nikolay; Kohonen, Pekka; Munteanu, Cristian R; Sarimveis, Haralambos; Smeets, Bart; Sopasakis, Pantelis; Tsiliki, Georgia; Vorgrimmler, David; Willighagen, Egon

    2015-01-01

    The NanoSafety Cluster, a cluster of projects funded by the European Commision, identified the need for a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs). Ontologies, open standards, and interoperable designs were envisioned to empower a harmonized approach to European research in nanotechnology. This setting provides a number of opportunities and challenges in the representation of nanomaterials data and the integration of ENM information originating from diverse systems. Within this cluster, eNanoMapper works towards supporting the collaborative safety assessment for ENMs by creating a modular and extensible infrastructure for data sharing, data analysis, and building computational toxicology models for ENMs. The eNanoMapper database solution builds on the previous experience of the consortium partners in supporting diverse data through flexible data storage, open source components and web services. We have recently described the design of the eNanoMapper prototype database along with a summary of challenges in the representation of ENM data and an extensive review of existing nano-related data models, databases, and nanomaterials-related entries in chemical and toxicogenomic databases. This paper continues with a focus on the database functionality exposed through its application programming interface (API), and its use in visualisation and modelling. Considering the preferred community practice of using spreadsheet templates, we developed a configurable spreadsheet parser facilitating user friendly data preparation and data upload. We further present a web application able to retrieve the experimental data via the API and analyze it with multiple data preprocessing and machine learning algorithms. We demonstrate how the eNanoMapper database is used to import and publish online ENM and assay data from several data sources, how the "representational state transfer" (REST) API enables building user friendly

  3. The eNanoMapper database for nanomaterial safety information

    PubMed Central

    Chomenidis, Charalampos; Doganis, Philip; Fadeel, Bengt; Grafström, Roland; Hardy, Barry; Hastings, Janna; Hegi, Markus; Jeliazkov, Vedrin; Kochev, Nikolay; Kohonen, Pekka; Munteanu, Cristian R; Sarimveis, Haralambos; Smeets, Bart; Sopasakis, Pantelis; Tsiliki, Georgia; Vorgrimmler, David; Willighagen, Egon

    2015-01-01

    Summary Background: The NanoSafety Cluster, a cluster of projects funded by the European Commision, identified the need for a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs). Ontologies, open standards, and interoperable designs were envisioned to empower a harmonized approach to European research in nanotechnology. This setting provides a number of opportunities and challenges in the representation of nanomaterials data and the integration of ENM information originating from diverse systems. Within this cluster, eNanoMapper works towards supporting the collaborative safety assessment for ENMs by creating a modular and extensible infrastructure for data sharing, data analysis, and building computational toxicology models for ENMs. Results: The eNanoMapper database solution builds on the previous experience of the consortium partners in supporting diverse data through flexible data storage, open source components and web services. We have recently described the design of the eNanoMapper prototype database along with a summary of challenges in the representation of ENM data and an extensive review of existing nano-related data models, databases, and nanomaterials-related entries in chemical and toxicogenomic databases. This paper continues with a focus on the database functionality exposed through its application programming interface (API), and its use in visualisation and modelling. Considering the preferred community practice of using spreadsheet templates, we developed a configurable spreadsheet parser facilitating user friendly data preparation and data upload. We further present a web application able to retrieve the experimental data via the API and analyze it with multiple data preprocessing and machine learning algorithms. Conclusion: We demonstrate how the eNanoMapper database is used to import and publish online ENM and assay data from several data sources, how the “representational state transfer

  4. Implementation of a computer database testing and analysis program.

    PubMed

    Rouse, Deborah P

    2007-01-01

    The author is the coordinator of a computer software database testing and analysis program implemented in an associate degree nursing program. Computer software database programs help support the testing development and analysis process. Critical thinking is measurable and promoted with their use. The reader of this article will learn what is involved in procuring and implementing a computer database testing and analysis program in an academic nursing program. The use of the computerized database for testing and analysis will be approached as a method to promote and evaluate the nursing student's critical thinking skills and to prepare the nursing student for the National Council Licensure Examination.

  5. Environmental databases and other computerized information tools

    NASA Technical Reports Server (NTRS)

    Clark-Ingram, Marceia

    1995-01-01

    Increasing environmental legislation has brought about the development of many new environmental databases and software application packages to aid in the quest for environmental compliance. These databases and software packages are useful tools and applicable to a wide range of environmental areas from atmospheric modeling to materials replacement technology. The great abundance of such products and services can be very overwhelming when trying to identify the tools which best meet specific needs. This paper will discuss the types of environmental databases and software packages available. This discussion will also encompass the affected environmental areas of concern, product capabilities, and hardware requirements for product utilization.

  6. 48 CFR 804.1102 - Vendor Information Pages (VIP) Database.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... (VIP) Database. 804.1102 Section 804.1102 Federal Acquisition Regulations System DEPARTMENT OF VETERANS AFFAIRS GENERAL ADMINISTRATIVE MATTERS Contract Execution 804.1102 Vendor Information Pages (VIP) Database. Prior to January 1, 2012, all VOSBs and SDVOSBs must be listed in the VIP database, available at...

  7. 48 CFR 804.1102 - Vendor Information Pages (VIP) Database.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... (VIP) Database. 804.1102 Section 804.1102 Federal Acquisition Regulations System DEPARTMENT OF VETERANS AFFAIRS GENERAL ADMINISTRATIVE MATTERS Contract Execution 804.1102 Vendor Information Pages (VIP) Database. Prior to January 1, 2012, all VOSBs and SDVOSBs must be listed in the VIP database, available at...

  8. 48 CFR 804.1102 - Vendor Information Pages (VIP) Database.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... (VIP) Database. 804.1102 Section 804.1102 Federal Acquisition Regulations System DEPARTMENT OF VETERANS AFFAIRS GENERAL ADMINISTRATIVE MATTERS Contract Execution 804.1102 Vendor Information Pages (VIP) Database. Prior to January 1, 2012, all VOSBs and SDVOSBs must be listed in the VIP database, available at...

  9. 48 CFR 804.1102 - Vendor Information Pages (VIP) Database.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... (VIP) Database. 804.1102 Section 804.1102 Federal Acquisition Regulations System DEPARTMENT OF VETERANS AFFAIRS GENERAL ADMINISTRATIVE MATTERS Contract Execution 804.1102 Vendor Information Pages (VIP) Database. Prior to January 1, 2012, all VOSBs and SDVOSBs must be listed in the VIP database, available at...

  10. 48 CFR 804.1102 - Vendor Information Pages (VIP) Database.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... (VIP) Database. 804.1102 Section 804.1102 Federal Acquisition Regulations System DEPARTMENT OF VETERANS AFFAIRS GENERAL ADMINISTRATIVE MATTERS Contract Execution 804.1102 Vendor Information Pages (VIP) Database. Prior to January 1, 2012, all VOSBs and SDVOSBs must be listed in the VIP database, available at...

  11. Database design using NIAM (Nijssen Information Analysis Method) modeling

    SciTech Connect

    Stevens, N.H.

    1989-01-01

    The Nissjen Information Analysis Method (NIAM) is an information modeling technique based on semantics and founded in set theory. A NIAM information model is a graphical representation of the information requirements for some universe of discourse. Information models facilitate data integration and communication within an organization about data semantics. An information model is sometimes referred to as the semantic model or the conceptual schema. It helps in the logical and physical design and implementation of databases. NIAM information modeling is used at Sandia National Laboratories to design and implement relational databases containing engineering information which meet the users' information requirements. The paper focuses on the design of one database which satisfied the data needs of four disjoint but closely related applications. The applications as they existed before did not talk to each other even though they stored much of the same data redundantly. NIAM was used to determine the information requirements and design the integrated database. 6 refs., 7 figs.

  12. TWRS information locator database system administrator`s manual

    SciTech Connect

    Knutson, B.J., Westinghouse Hanford

    1996-09-13

    This document is a guide for use by the Tank Waste Remediation System (TWRS) Information Locator Database (ILD) System Administrator. The TWRS ILD System is an inventory of information used in the TWRS Systems Engineering process to represent the TWRS Technical Baseline. The inventory is maintained in the form of a relational database developed in Paradox 4.5.

  13. Diet History Questionnaire: Database Utility Program

    Cancer.gov

    If you need to modify the standard nutrient database, a single nutrient value must be provided by gender and portion size. If you have modified the database to have fewer or greater demographic groups, nutrient values must be included for each group.

  14. Diet History Questionnaire II: Database Utility Program

    Cancer.gov

    If you need to modify the standard nutrient database, a single nutrient value must be provided by gender and portion size. If you have modified the database to have fewer or greater demographic groups, nutrient values must be included for each group.

  15. The Animal Genetic Resource Information Network (AnimalGRIN) Database: A Database Design & Implementation Case

    ERIC Educational Resources Information Center

    Irwin, Gretchen; Wessel, Lark; Blackman, Harvey

    2012-01-01

    This case describes a database redesign project for the United States Department of Agriculture's National Animal Germplasm Program (NAGP). The case provides a valuable context for teaching and practicing database analysis, design, and implementation skills, and can be used as the basis for a semester-long team project. The case demonstrates the…

  16. The Animal Genetic Resource Information Network (AnimalGRIN) Database: A Database Design & Implementation Case

    ERIC Educational Resources Information Center

    Irwin, Gretchen; Wessel, Lark; Blackman, Harvey

    2012-01-01

    This case describes a database redesign project for the United States Department of Agriculture's National Animal Germplasm Program (NAGP). The case provides a valuable context for teaching and practicing database analysis, design, and implementation skills, and can be used as the basis for a semester-long team project. The case demonstrates the…

  17. Evaluation of personal digital assistant drug information databases for the managed care pharmacist.

    PubMed

    Lowry, Colleen M; Kostka-Rokosz, Maria D; McCloskey, William W

    2003-01-01

    Personal digital assistants (PDAs) are becoming a necessity for practicing pharmacists. They offer a time-saving and convenient way to obtain current drug information. Several software companies now offer general drug information databases for use on hand held computers. PDAs priced less than 200 US dollars often have limited memory capacity; therefore, the user must choose from a growing list of general drug information database options in order to maximize utility without exceeding memory capacity. This paper reviews the attributes of available general drug information software databases for the PDA. It provides information on the content, advantages, limitations, pricing, memory requirements, and accessibility of drug information software databases. Ten drug information databases were subjectively analyzed and evaluated based on information from the product.s Web site, vendor Web sites, and from our experience. Some of these databases have attractive auxiliary features such as kinetics calculators, disease references, drug-drug and drug-herb interaction tools, and clinical guidelines, which may make them more useful to the PDA user. Not all drug information databases are equal with regard to content, author credentials, frequency of updates, and memory requirements. The user must therefore evaluate databases for completeness, currency, and cost effectiveness before purchase. In addition, consideration should be given to the ease of use and flexibility of individual programs.

  18. Information Systems in Teacher Preparation Programs: What Can We Learn from a 5-Year Longitudinal Case Study of an Electronic Portfolio Database?

    ERIC Educational Resources Information Center

    Swan, Gerry

    2009-01-01

    In 2003, a portfolio system was implemented to manage the data associated with the field experiences in a teacher education program at a research institution in the southeast region of the United States. In this longitudinal study, the implementation trends from usage data extracted from the system are used to discuss the implications for the use…

  19. Information Systems in Teacher Preparation Programs: What Can We Learn from a 5-Year Longitudinal Case Study of an Electronic Portfolio Database?

    ERIC Educational Resources Information Center

    Swan, Gerry

    2009-01-01

    In 2003, a portfolio system was implemented to manage the data associated with the field experiences in a teacher education program at a research institution in the southeast region of the United States. In this longitudinal study, the implementation trends from usage data extracted from the system are used to discuss the implications for the use…

  20. Development of an Ada programming support environment database SEAD (Software Engineering and Ada Database) administration manual

    NASA Technical Reports Server (NTRS)

    Liaw, Morris; Evesson, Donna

    1988-01-01

    Software Engineering and Ada Database (SEAD) was developed to provide an information resource to NASA and NASA contractors with respect to Ada-based resources and activities which are available or underway either in NASA or elsewhere in the worldwide Ada community. The sharing of such information will reduce duplication of effort while improving quality in the development of future software systems. SEAD data is organized into five major areas: information regarding education and training resources which are relevant to the life cycle of Ada-based software engineering projects such as those in the Space Station program; research publications relevant to NASA projects such as the Space Station Program and conferences relating to Ada technology; the latest progress reports on Ada projects completed or in progress both within NASA and throughout the free world; Ada compilers and other commercial products that support Ada software development; and reusable Ada components generated both within NASA and from elsewhere in the free world. This classified listing of reusable components shall include descriptions of tools, libraries, and other components of interest to NASA. Sources for the data include technical newletters and periodicals, conference proceedings, the Ada Information Clearinghouse, product vendors, and project sponsors and contractors.

  1. Information discovery applied to a power generation database

    SciTech Connect

    Rodriguez, G.; Hernandez, V.

    1996-11-01

    An information discovery system is presented that extracts knowledge from databases in a form that is much more compact and easy to understand than the original set of records. The system was tested with a subset of a real power generation database of the Federal Commission of Electricity in Mexico (CFE = Comision Federal de Electricidad). The paper discusses a machine learning algorithm for induction of rules and the heuristics used to obtain the simplest rules that define the knowledge hidden in a database.

  2. A description of an automated database comparison program

    NASA Technical Reports Server (NTRS)

    Mcminn, John D.; Shaughnessy, John D.; Arbuckle, P. Douglas

    1988-01-01

    An interactive FORTRAN computer comparison program designed to automatically locate regions of incongruity between two databases is described. The software, guided by user input parameters, incrementally compares the databases and generates plots of these regions in the databases which do not compare within a specified tolerance. Additionally, tools are provided within the software which enable the user to statistically reduce the number of data points in the databases compared. To facilitate the description of these tools, the procedures used to compare two aerodynamic databases for an F-18A fighter aircraft are detailed.

  3. 75 FR 76831 - Publicly Available Consumer Product Safety Information Database

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-09

    ...The Consumer Product Safety Commission (``Commission,'' ``CPSC,'' or ``we'') is issuing a final rule that would establish a Publicly Available Consumer Product Safety Information Database (``Database''). Section 212 of the Consumer Product Safety Improvement Act of 2008 (``CPSIA'') amended the Consumer Product Safety Act (``CPSA'') to require the Commission to establish and maintain a publicly available, searchable database on the safety of consumer products, and other products or substances regulated by the Commission. The final rule interprets various statutory requirements pertaining to the information to be included in the Database and also establishes provisions regarding submitting reports of harm; providing notice of reports of harm to manufacturers; publishing reports of harm and manufacturer comments in the Database; and dealing with confidential and materially inaccurate information.

  4. Creation of geographic information database of subsatellite calibration test site

    NASA Astrophysics Data System (ADS)

    Zyelyk, Ya. I.; Semeniv, O. V.

    2014-12-01

    The prototype of geographic information database (DB) of the sub-satellite calibration test site has been created, to which user can be accessed from the free open-source geographic information system Quantum GIS (QGIS) environment. QGIS is used as an integrator of all data and applications and visualizer of the satellite imagery and vector layers of test sites in the cartographic interface. Conversion of the database from the local representation in the MS Access to the server representation in the PostgreSQL environment has been performed. Dynamic application to QGIS for user interaction from QGIS environment with the object-relational database and to display information from the database has been created. Functional-algorithmic part of these application and the interface for user interaction with the database has been developed.

  5. Brain Tumor Database, a free relational database for collection and analysis of brain tumor patient information.

    PubMed

    Bergamino, Maurizio; Hamilton, David J; Castelletti, Lara; Barletta, Laura; Castellan, Lucio

    2015-03-01

    In this study, we describe the development and utilization of a relational database designed to manage the clinical and radiological data of patients with brain tumors. The Brain Tumor Database was implemented using MySQL v.5.0, while the graphical user interface was created using PHP and HTML, thus making it easily accessible through a web browser. This web-based approach allows for multiple institutions to potentially access the database. The BT Database can record brain tumor patient information (e.g. clinical features, anatomical attributes, and radiological characteristics) and be used for clinical and research purposes. Analytic tools to automatically generate statistics and different plots are provided. The BT Database is a free and powerful user-friendly tool with a wide range of possible clinical and research applications in neurology and neurosurgery. The BT Database graphical user interface source code and manual are freely available at http://tumorsdatabase.altervista.org.

  6. The Information Scientist as Database Manager in a Corporate Environment.

    ERIC Educational Resources Information Center

    Chapman, Janet L.

    1986-01-01

    Special librarians are in unique position to become directly involved in the design, development, and management of automated in-house databases. Software packages called application generators enable the librarian/information scientist to develop database applications without programmer intervention and with very little or no knowledge of…

  7. The Internationality of Information Banks--Online Bibliographic Databases.

    ERIC Educational Resources Information Center

    Veith, Richard H.

    The international character of online bibliographic databases is assessed by addressing three major aspects: literature production, article selection, and database use, as well as a number of side issues such as distribution and language. Requests for information were sent to producers and suppliers, most of whom responded, with no attempt being…

  8. Online Information. Selected Databases at the New York State Library.

    ERIC Educational Resources Information Center

    New York State Library, Albany. Database Services.

    This brochure describes the online information services at the New York State Library, which has online access to over 250 databases covering a broad range of subject areas, including current events, law, science, medicine, public affairs, grants, business, computer technology, education, social welfare, and humanities. Many of these databases are…

  9. Online Information. Selected Databases at the New York State Library.

    ERIC Educational Resources Information Center

    New York State Library, Albany. Database Services.

    This brochure describes the online information services at the New York State Library, which has online access to over 250 databases covering a broad range of subject areas, including current events, law, science, medicine, public affairs, grants, business, computer technology, education, social welfare, and humanities. Many of these databases are…

  10. Relational Information Management Data-Base System

    NASA Technical Reports Server (NTRS)

    Storaasli, O. O.; Erickson, W. J.; Gray, F. P.; Comfort, D. L.; Wahlstrom, S. O.; Von Limbach, G.

    1985-01-01

    DBMS with several features particularly useful to scientists and engineers. RIM5 interfaced with any application program written in language capable of Calling FORTRAN routines. Applications include data management for Space Shuttle Columbia tiles, aircraft flight tests, high-pressure piping, atmospheric chemistry, census, university registration, CAD/CAM Geometry, and civil-engineering dam construction.

  11. Relational Information Management Data-Base System

    NASA Technical Reports Server (NTRS)

    Storaasli, O. O.; Erickson, W. J.; Gray, F. P.; Comfort, D. L.; Wahlstrom, S. O.; Von Limbach, G.

    1985-01-01

    DBMS with several features particularly useful to scientists and engineers. RIM5 interfaced with any application program written in language capable of Calling FORTRAN routines. Applications include data management for Space Shuttle Columbia tiles, aircraft flight tests, high-pressure piping, atmospheric chemistry, census, university registration, CAD/CAM Geometry, and civil-engineering dam construction.

  12. The publication speed of information in bibliographic chemical databases.

    PubMed

    Dióspatonyi, I; Horvai, G; Braun, T

    2001-01-01

    The quality of bibliographic databases depends very much on the reliably fast follow-up of the pertinent literature. We have studied this quality feature of two important chemical bibliographic databases: Chemical Abstracts (CA) and Analytical Abstracts (AA). The follow-up rate (speed of information) of these databases has been determined with respect to 10 core journals in analytical chemistry. On the average the performance of Chemical Abstracts has been good over the past decade, while the formerly poor performance of Analytical Abstracts has improved considerably. Some quite unexpected nonuniformities can, however, still be detected in the publication time distributions of both databases.

  13. Clinical decision support tools: analysis of online drug information databases

    PubMed Central

    Clauson, Kevin A; Marsh, Wallace A; Polen, Hyla H; Seamon, Matthew J; Ortiz, Blanca I

    2007-01-01

    Background Online drug information databases are used to assist in enhancing clinical decision support. However, the choice of which online database to consult, purchase or subscribe to is likely made based on subjective elements such as history of use, familiarity, or availability during professional training. The purpose of this study was to evaluate clinical decision support tools for drug information by systematically comparing the most commonly used online drug information databases. Methods Five commercially available and two freely available online drug information databases were evaluated according to scope (presence or absence of answer), completeness (the comprehensiveness of the answers), and ease of use. Additionally, a composite score integrating all three criteria was utilized. Fifteen weighted categories comprised of 158 questions were used to conduct the analysis. Descriptive statistics and Chi-square were used to summarize the evaluation components and make comparisons between databases. Scheffe's multiple comparison procedure was used to determine statistically different scope and completeness scores. The composite score was subjected to sensitivity analysis to investigate the effect of the choice of percentages for scope and completeness. Results The rankings for the databases from highest to lowest, based on composite scores were Clinical Pharmacology, Micromedex, Lexi-Comp Online, Facts & Comparisons 4.0, Epocrates Online Premium, RxList.com, and Epocrates Online Free. Differences in scope produced three statistical groupings with Group 1 (best) performers being: Clinical Pharmacology, Micromedex, Facts & Comparisons 4.0, Lexi-Comp Online, Group 2: Epocrates Premium and RxList.com and Group 3: Epocrates Free (p < 0.05). Completeness scores were similarly stratified. Collapsing the databases into two groups by access (subscription or free), showed the subscription databases performed better than the free databases in the measured criteria (p < 0

  14. Clinical decision support tools: analysis of online drug information databases.

    PubMed

    Clauson, Kevin A; Marsh, Wallace A; Polen, Hyla H; Seamon, Matthew J; Ortiz, Blanca I

    2007-03-08

    Online drug information databases are used to assist in enhancing clinical decision support. However, the choice of which online database to consult, purchase or subscribe to is likely made based on subjective elements such as history of use, familiarity, or availability during professional training. The purpose of this study was to evaluate clinical decision support tools for drug information by systematically comparing the most commonly used online drug information databases. Five commercially available and two freely available online drug information databases were evaluated according to scope (presence or absence of answer), completeness (the comprehensiveness of the answers), and ease of use. Additionally, a composite score integrating all three criteria was utilized. Fifteen weighted categories comprised of 158 questions were used to conduct the analysis. Descriptive statistics and Chi-square were used to summarize the evaluation components and make comparisons between databases. Scheffe's multiple comparison procedure was used to determine statistically different scope and completeness scores. The composite score was subjected to sensitivity analysis to investigate the effect of the choice of percentages for scope and completeness. The rankings for the databases from highest to lowest, based on composite scores were Clinical Pharmacology, Micromedex, Lexi-Comp Online, Facts & Comparisons 4.0, Epocrates Online Premium, RxList.com, and Epocrates Online Free. Differences in scope produced three statistical groupings with Group 1 (best) performers being: Clinical Pharmacology, Micromedex, Facts & Comparisons 4.0, Lexi-Comp Online, Group 2: Epocrates Premium and RxList.com and Group 3: Epocrates Free (p < 0.05). Completeness scores were similarly stratified. Collapsing the databases into two groups by access (subscription or free), showed the subscription databases performed better than the free databases in the measured criteria (p < 0.001). Online drug

  15. Use of Numeric Databases in Reference and Information Services.

    ERIC Educational Resources Information Center

    Bartkus, Edward P.

    1982-01-01

    Outlines structural changes in the information supply community effected by the emergence of computer-searchable files as a major information resource together with other developments in electronic technology. Database definitions, interface differences, DuPont experiences, and options available to libraries and information centers are discussed.…

  16. Discovering Knowledge from Noisy Databases Using Genetic Programming.

    ERIC Educational Resources Information Center

    Wong, Man Leung; Leung, Kwong Sak; Cheng, Jack C. Y.

    2000-01-01

    Presents a framework that combines Genetic Programming and Inductive Logic Programming, two approaches in data mining, to induce knowledge from noisy databases. The framework is based on a formalism of logic grammars and is implemented as a data mining system called LOGENPRO (Logic Grammar-based Genetic Programming System). (Contains 34…

  17. A Relational Algebra Query Language for Programming Relational Databases

    ERIC Educational Resources Information Center

    McMaster, Kirby; Sambasivam, Samuel; Anderson, Nicole

    2011-01-01

    In this paper, we describe a Relational Algebra Query Language (RAQL) and Relational Algebra Query (RAQ) software product we have developed that allows database instructors to teach relational algebra through programming. Instead of defining query operations using mathematical notation (the approach commonly taken in database textbooks), students…

  18. Extending a geocoding database by Web information extraction

    NASA Astrophysics Data System (ADS)

    Wu, Yunchao; Niu, Zheng

    2008-10-01

    Local Search has recently attracted much attention. And the popular architecture of Local Search is map-and-hyperlinks, which links geo-referenced Web content to a map interface. This architecture shows that a good Local Search not only depends on search engine techniques, but also on a perfect geocoding database. The process of building and updating a geocoding database is laborious and time consuming so that it is usually difficult to keep up with the change of the real world. However, the Web provides a rich resource of location related information, which would be a supplementary information source for geocoding. Therefore, this paper introduces how to extract geographic information from Web documents to extend a geocoding database. Our approach involves two major steps. First, geographic named entities are identified and extracted from Web content. Then, named entities are geocoded and put into storage. By this way, we can extend a geocoding database to provide better local Web search services.

  19. Information Retrieval in Telemedicine: a Comparative Study on Bibliographic Databases

    PubMed Central

    Ahmadi, Maryam; Sarabi, Roghayeh Ershad; Orak, Roohangiz Jamshidi; Bahaadinbeigy, Kambiz

    2015-01-01

    Background and Aims: The first step in each systematic review is selection of the most valid database that can provide the highest number of relevant references. This study was carried out to determine the most suitable database for information retrieval in telemedicine field. Methods: Cinhal, PubMed, Web of Science and Scopus databases were searched for telemedicine matched with Education, cost benefit and patient satisfaction. After analysis of the obtained results, the accuracy coefficient, sensitivity, uniqueness and overlap of databases were calculated. Results: The studied databases differed in the number of retrieved articles. PubMed was identified as the most suitable database for retrieving information on the selected topics with the accuracy and sensitivity ratios of 50.7% and 61.4% respectively. The uniqueness percent of retrieved articles ranged from 38% for Pubmed to 3.0% for Cinhal. The highest overlap rate (18.6%) was found between PubMed and Web of Science. Less than 1% of articles have been indexed in all searched databases. Conclusion: PubMed is suggested as the most suitable database for starting search in telemedicine and after PubMed, Scopus and Web of Science can retrieve about 90% of the relevant articles. PMID:26236086

  20. Information Retrieval in Telemedicine: a Comparative Study on Bibliographic Databases.

    PubMed

    Ahmadi, Maryam; Sarabi, Roghayeh Ershad; Orak, Roohangiz Jamshidi; Bahaadinbeigy, Kambiz

    2015-06-01

    The first step in each systematic review is selection of the most valid database that can provide the highest number of relevant references. This study was carried out to determine the most suitable database for information retrieval in telemedicine field. Cinhal, PubMed, Web of Science and Scopus databases were searched for telemedicine matched with Education, cost benefit and patient satisfaction. After analysis of the obtained results, the accuracy coefficient, sensitivity, uniqueness and overlap of databases were calculated. The studied databases differed in the number of retrieved articles. PubMed was identified as the most suitable database for retrieving information on the selected topics with the accuracy and sensitivity ratios of 50.7% and 61.4% respectively. The uniqueness percent of retrieved articles ranged from 38% for Pubmed to 3.0% for Cinhal. The highest overlap rate (18.6%) was found between PubMed and Web of Science. Less than 1% of articles have been indexed in all searched databases. PubMed is suggested as the most suitable database for starting search in telemedicine and after PubMed, Scopus and Web of Science can retrieve about 90% of the relevant articles.

  1. Fish Karyome: A karyological information network database of Indian Fishes.

    PubMed

    Nagpure, Naresh Sahebrao; Pathak, Ajey Kumar; Pati, Rameshwar; Singh, Shri Prakash; Singh, Mahender; Sarkar, Uttam Kumar; Kushwaha, Basdeo; Kumar, Ravindra

    2012-01-01

    'Fish Karyome', a database on karyological information of Indian fishes have been developed that serves as central source for karyotype data about Indian fishes compiled from the published literature. Fish Karyome has been intended to serve as a liaison tool for the researchers and contains karyological information about 171 out of 2438 finfish species reported in India and is publically available via World Wide Web. The database provides information on chromosome number, morphology, sex chromosomes, karyotype formula and cytogenetic markers etc. Additionally, it also provides the phenotypic information that includes species name, its classification, and locality of sample collection, common name, local name, sex, geographical distribution, and IUCN Red list status. Besides, fish and karyotype images, references for 171 finfish species have been included in the database. Fish Karyome has been developed using SQL Server 2008, a relational database management system, Microsoft's ASP.NET-2008 and Macromedia's FLASH Technology under Windows 7 operating environment. The system also enables users to input new information and images into the database, search and view the information and images of interest using various search options. Fish Karyome has wide range of applications in species characterization and identification, sex determination, chromosomal mapping, karyo-evolution and systematics of fishes.

  2. Retrieving Online Information on Drugs: An Analysis of Four Databases.

    ERIC Educational Resources Information Center

    Lavengood, Kathryn A.

    This study examines the indexing of drugs in the literature and compares actual drug indexing to stated indexing policies in selected databases. The goal is to aid health science information specialists, end-users, and/or non-subject experts to improve recall and comprehensiveness when searching for drug information by identifying the most useful…

  3. Potentials of Advanced Database Technology for Military Information Systems

    DTIC Science & Technology

    2001-04-01

    might be promising for military information systems as well. In this paper, we discuss the potentials of multi-media databases and data mining . Both...directions focus on the handling of a vague information need of a user. In general, data mining systems allow a higher degree of vagueness than multi-media

  4. Towards general information theoretical representations of database problems

    SciTech Connect

    Joslyn, C.

    1997-06-01

    General database systems are described from the General Systems Theoretical (GST) framework. In this context traditional information theoretical (statistical) and general information theoretical (fuzzy measure and set theoretical, possibilistic, and random set theoretical) representations are derived. A preliminary formal framework is introduced.

  5. Retrieving Online Information on Drugs: An Analysis of Four Databases.

    ERIC Educational Resources Information Center

    Lavengood, Kathryn A.

    This study examines the indexing of drugs in the literature and compares actual drug indexing to stated indexing policies in selected databases. The goal is to aid health science information specialists, end-users, and/or non-subject experts to improve recall and comprehensiveness when searching for drug information by identifying the most useful…

  6. An Enriched Meta-Information Schema for Astronomical Databases

    NASA Astrophysics Data System (ADS)

    Calvo, S. C.; White, N. E.; McGlynn, T. A.; Duesterhaus, M. M.; Rosen, C. A.; Sabol, E. J.

    The next-generation High Energy Astrophysics Science Ar\\-chive Research Center (HEASARC) database system is under development with an enriched meta-information schema, allowing flexibility in the description of astronomical database tables and selection of data therefrom. It is anticipated that this schema will facilitate access to the data in a client-server fashion, and also make it easier to exchange data between institutions.

  7. DPS Planetary Science Graduate Programs Database for Students and Advisors

    NASA Astrophysics Data System (ADS)

    Klassen, David R.; Roman, Anthony; Meinke, Bonnie K.

    2016-10-01

    Several years ago the DPS Education committee decided that it should have an online resource that could help undergraduate students find graduate programs that could lead to a PhD with a focus in planetary science. It began in 2013 as a static page of information and evolved from there to a database-driven web site. Visitors can browse the entire list of programs or create a subset listing based on several filters. The site should be of use not only to undergraduates looking for programs, but also for advisers looking to help their students decide on their future plans. The reason for such a list is that "planetary science" is a heading that covers an extremely diverse set of disciplines. The usual case is that planetary scientists are housed in a discipline-placed department so that finding them is typically not easy—undergraduates cannot look for a Planetary Science department, but must (somehow) know to search for them in all their possible places. This can overwhelm even determined undergraduate student, and even many advisers!We present here the updated site and a walk-through of the basic features as well as some usage statistics from the collected web site analytics. We ask for community feedback on additional features to make the system more usable for them. We also call upon those mentoring and advising undergraduates to use this resource, and for program admission chairs to continue to review their entry and provide us with the most up-to-date information.The URL for our site is http://dps.aas.org/education/graduate-schools.

  8. Using Alumni and Student Databases for Program Evaluation and Planning

    ERIC Educational Resources Information Center

    Davidson-Shivers, Gayle V.; Inpornjivit, Kit; Sellers, Kim

    2004-01-01

    This article describes the process used to identify students in and alumni of an instructional design master's and doctoral program in order to evaluate the effectiveness of this program. Two databases were created on these two groups and then later used to develop to datasheet surveys, which were the Survey of Students and the Survey of Alumni.…

  9. A Prototype Gerontological Information Program.

    ERIC Educational Resources Information Center

    Brindle, Elizabeth A.; And Others

    This paper describes research on the kinds of information needed by individuals in human service delivery and older persons' organizations. The Gerontological Information Program (GRIP) uses an integrated approach to gerontological information: research, systems development, and education. An information needs assessment questionnaire survey of 65…

  10. UST/LUST Program Information

    EPA Pesticide Factsheets

    This asset includes an inventory of programmatic information, including policies and guidance, training course materials and Leaking Underground Storage Tanks (LUST) Trust Fund information. This documentation is used by states, territories, tribes and private parties to implement the Underground Storage Tank (UST) program. It also includes analysis of the laws and regulations that govern USTs, and policies and guidance for implementing the UST program developed by EPA in consultation with state and territorial UST programs.

  11. Information Security Program Regulation

    DTIC Science & Technology

    1986-06-01

    Over the High Seas," January 13, 1981 (rr) DoD Directive 5210.41, "Security Criteria and Standards for Pro - tecting Nuclear Weapons," September 12...relevant to operations of nongovernment personnel entrusted with classified information shall be made applicable thereto by con - tracts or other legally...Regulation applies to protection of classified information pro -cessed, stored or used in, or communicated, displayed or dissemi- nated by an automatic

  12. Database service for Japanese Standards Information : 'KIKAKU NET'

    NASA Astrophysics Data System (ADS)

    Fujii, Masayuki

    Japanese Standards Association (JSA) started the standards information database services, 'KIKAKU NET' in October 1989. In Japan, it is the only standards information database compiled based on the information and know-hows which the Association has accumulated over fifteen years and has been entrusted the project for research by Agency Industrial Science and Technology, Ministry of International Trade and Industry. It covers the domestic standards information datafile for Japanese Industrial Standards (JIS), Japanese Agricultural Standards (JAS), and some Japanese Association Standards which are related to JIS, and the foreign standards information datafile for international standards of ISO and IEC, foreign national standards, and foreign association standards. 'KIKAKU NET' is available for user's personal computer by on-line access to the host computer of distributors which have been contracted with the Association. This paper describes characteristics, contents and the system outline of 'KIKAKU NET'.

  13. RadOnc: An Integrated Clinical Database and Information Retrieval System Implemented by HyperCard

    PubMed Central

    Michael, Patricia A.; Foxlee, R. Heath

    1989-01-01

    RadOnc is a prototype hypermedia program designed for the resident physician which integrates a radiation oncology clinical database with reference information. Basic and clinical science information relevant to radiation oncology with pertinent literature reviews are linked to patient records which contain a clinical summary of the presentation, treatment and results. RadOnc's features include a dictionary, search capability, navigational aids, information printing and archiving, and graphics, linkage and updating tools.

  14. Flight Deck Interval Management Display. [Elements, Information and Annunciations Database User Guide

    NASA Technical Reports Server (NTRS)

    Lancaster, Jeff; Dillard, Michael; Alves, Erin; Olofinboba, Olu

    2014-01-01

    The User Guide details the Access Database provided with the Flight Deck Interval Management (FIM) Display Elements, Information, & Annunciations program. The goal of this User Guide is to support ease of use and the ability to quickly retrieve and select items of interest from the Database. The Database includes FIM Concepts identified in a literature review preceding the publication of this document. Only items that are directly related to FIM (e.g., spacing indicators), which change or enable FIM (e.g., menu with control buttons), or which are affected by FIM (e.g., altitude reading) are included in the database. The guide has been expanded from previous versions to cover database structure, content, and search features with voiced explanations.

  15. Data-Based Interval Throwing Programs for Baseball Players

    PubMed Central

    Axe, Michael; Hurd, Wendy; Snyder-Mackler, Lynn

    2009-01-01

    Context: Baseball throwing injuries are common. Emphasis on injury prevention and rehabilitation is made in an attempt to keep athletes on the field of competition. Interval throwing programs are an integral part of training, conditioning, and returning an injured baseball player to the game. Evidence Acquisition: Development of data-driven programs was based on the number, type, distance, and intensity of throws during games, across the spectrum of ages and positions for baseball athletes at all levels of play. Statistical analysis by age, position, and level of play determined the need for separate throwing programs. Means, the high range, game rules, and practical considerations were used to develop each data-based interval throwing program. Results: Data-based age and level-of-play interval throwing programs for pitchers, catchers, infielders, and outfielders have been developed, tested, and implemented for more than 10 years. Progression is based on type and location of injury, symptoms in response to throwing, and preinjury performance profile. Although the throwing programs are highly structured, there is ample opportunity to modify them to meet the needs of individual athletes. Conclusion: Data-based interval throwing programs for baseball athletes are an integral training and conditioning element for both injured and uninjured athletes who are preparing for sports participation. Medical team members should equip themselves with an understanding of how to use the programs for safe training, conditioning, and return to play. PMID:23015866

  16. ODIN. Online Database Information Network: ODIN Policy & Procedure Manual.

    ERIC Educational Resources Information Center

    Townley, Charles T.; And Others

    Policies and procedures are outlined for the Online Database Information Network (ODIN), a cooperative of libraries in south-central Pennsylvania, which was organized to improve library services through technology. The first section covers organization and goals, members, and responsibilities of the administrative council and libraries. Patrons…

  17. Integration of Information Retrieval and Database Management Systems.

    ERIC Educational Resources Information Center

    Deogun, Jitender S.; Raghavan, Vijay V.

    1988-01-01

    Discusses the motivation for integrating information retrieval and database management systems, and proposes a probabilistic retrieval model in which records in a file may be composed of attributes (formatted data items) and descriptors (content indicators). The details and resolutions of difficulties involved in integrating such systems are…

  18. Sensory Information Systems Program

    DTIC Science & Technology

    2012-03-06

    Measurement Scientific Challenge: How does binaural hearing disclose the locus of sound in real 3D environments? • Eliminates inter-aural...Auditory Representations. 22-23 August. Hosted by U. Washington. Informational Masking & Binaural Hearing. 17-19 Nov. Hosted by Boston U. Brain...representation and filtering. • E. Bleszynski (Monopole Research): Math model of bone- & tissue-conducted sound • M. Elhilali (Johns Hopkins U

  19. The use of relational databases in health care information systems.

    PubMed

    Borok, L S

    1995-01-01

    The relational database is especially well suited to be the cornerstone of the next generation of health care information systems. Health care organizations can take advantage of the lessons learned from major corporations that have built entire information infrastructures using it. The relational model's strength in handling the analysis of transaction data makes it ideal for fulfilling complex utilization review requirements and providing a solid foundation for the increasing operational demands of large physician-managed managed care networks.

  20. IFIM: a database of integrated fitness information for microbial genes

    PubMed Central

    Wei, Wen; Ye, Yuan-Nong; Luo, Sen; Deng, Yan-Yan; Lin, Dan; Guo, Feng-Biao

    2014-01-01

    Knowledge of an organism’s fitness for survival is important for a complete understanding of microbial genetics and effective drug design. Current essential gene databases provide only binary essentiality data from genome-wide experiments. We therefore developed a new database that Integrates quantitative Fitness Information for Microbial genes (IFIM). The IFIM database currently contains data from 16 experiments and 2186 theoretical predictions. The highly significant correlation between the experiment-derived fitness data and our computational simulations demonstrated that the computer-generated predictions were often as reliable as the experimental data. The data in IFIM can be accessed easily, and the interface allows users to browse through the gene fitness information that it contains. IFIM is the first resource that allows easy access to fitness data of microbial genes. We believe this database will contribute to a better understanding of microbial genetics and will be useful in designing drugs to resist microbial pathogens, especially when experimental data are unavailable. Database URL: http://cefg.uestc.edu.cn/ifim/ or http://cefg.cn/ifim/ PMID:24923821

  1. Interoperability of biodiversity databases: biodiversity information on every desktop.

    PubMed

    Edwards, J L; Lane, M A; Nielsen, E S

    2000-09-29

    Data about biodiversity are either scattered in many databases or reside on paper or other media not amenable to interactive searching. The Global Biodiversity Information Facility (GBIF) is a framework for facilitating the digitization of biodiversity data and for making interoperable an as-yet-unknown number of biodiversity databases that are distributed around the globe. In concert with other existing efforts, GBIF will catalyze the completion of a Catalog of the Names of Known Organisms and will develop search engines to mine the vast quantities of biodiversity data. It will be an outstanding tool for scientists, natural resource managers, and policy-makers.

  2. An online database for genome information of agricultural plants

    PubMed Central

    Kim, ChangKug; Park, DongSuk; Seol, YoungJoo; Yoon, UngHan; Lee, GangSeob; Hahn, JangHo

    2012-01-01

    The integration-based genome database provides useful information through a user-friendly web interface that allows analysis of comparative genome for agricultural plants. We have concentrated on the functional bioinformatics of major agricultural resources, such as rice, Chinese cabbage, rice mutant lines, and microorganisms. The major functions are focused on functional genome analysis, including genome projects, gene expression analysis, gene markers with genetic map, analysis tools for comparative genome structure, and genome annotation in agricultural plants. Availability The database is available for free at http://nabic.naas.go.kr/ PMID:23275706

  3. A new database for medical images and information

    NASA Astrophysics Data System (ADS)

    Tahmoush, Dave; Samet, Hanan

    2007-03-01

    We present a medical image and medical record database for the storage, research, transmission, and evaluation of medical images, as well as tele-medicine applications. Any medical image from a source that supports the DICOM standard can be stored and accessed, as well as associated analysis and annotations. Information and image retrieval can be done based on patient info, date, doctor's annotations, features in the images, or a spatial combination of features. Secure access and transmission is addressed for tele-medicine applications. This database application follows all HIPPA regulations.

  4. Overview of national bird population monitoring programs and databases

    Treesearch

    Gregory S. Butcher; Bruce Peterjohn; C. John Ralph

    1993-01-01

    A number of programs have been set up to monitor populations of nongame migratory birds. We review these programs and their purposes and provide information on obtaining data or results from these programs. In addition, we review recommendations for improving these programs.

  5. [Retrieval of bioethical information from the SIBIL database].

    PubMed

    Pizzarelli, Scilla; Di Benedetto, Mirko

    2004-01-01

    SIBIL (Italian Online Bioethical Information System) is the database distributed on the net by the Istituto Superiore di Sanita through the homonymous system, conceived for a systematic dissemination of bioethical information, which is scattered in a multitude of informative resources, due to the interdisciplinary nature of the subject. The present work shows the structure and the main features of the database, which aims to provide a regular update on the national ethical debate through the collection of a wide range of documents. Emphasis is laid on the query mechanisms through practical suggestions which may contribute to a more precise searching, thus granting the retrieval of relevant documents. The article also describes the short-term development of the system, which is expected to take part in a European bioethical net in the near future.

  6. LinkProt: a database collecting information about biological links

    PubMed Central

    Dabrowski-Tumanski, Pawel; Jarmolinska, Aleksandra I.; Niemyska, Wanda; Rawdon, Eric J.; Millett, Kenneth C.; Sulkowska, Joanna I.

    2017-01-01

    Protein chains are known to fold into topologically complex shapes, such as knots, slipknots or complex lassos. This complex topology of the chain can be considered as an additional feature of a protein, separate from secondary and tertiary structures. Moreover, the complex topology can be defined also as one additional structural level. The LinkProt database (http://linkprot.cent.uw.edu.pl) collects and displays information about protein links — topologically non-trivial structures made by up to four chains and complexes of chains (e.g. in capsids). The database presents deterministic links (with loops closed, e.g. by two disulfide bonds), links formed probabilistically and macromolecular links. The structures are classified according to their topology and presented using the minimal surface area method. The database is also equipped with basic tools which allow users to analyze the topology of arbitrary (bio)polymers. PMID:27794552

  7. Environmental Monitoring and Assessment Program (EMAP) National Coastal Database

    EPA Pesticide Factsheets

    The Environmental Monitoring and Assessment Program (EMAP) National Coastal Database contains estuarine and coastal data that EMAP and Regional-EMAP have collected since 1990 from thousands of stations along the U.S. coasts. These data include water column data, sediment contaminants and toxicity data, and benthic macroinvertebrate and demersal fish community and contaminant data.

  8. Database Application for a Youth Market Livestock Production Education Program

    ERIC Educational Resources Information Center

    Horney, Marc R.

    2013-01-01

    This article offers an example of a database designed to support teaching animal production and husbandry skills in county youth livestock programs. The system was used to manage production goals, animal growth and carcass data, photos and other imagery, and participant records. These were used to produce a variety of customized reports to help…

  9. Database Application for a Youth Market Livestock Production Education Program

    ERIC Educational Resources Information Center

    Horney, Marc R.

    2013-01-01

    This article offers an example of a database designed to support teaching animal production and husbandry skills in county youth livestock programs. The system was used to manage production goals, animal growth and carcass data, photos and other imagery, and participant records. These were used to produce a variety of customized reports to help…

  10. Distributive Education Programs. A Program Information Publication.

    ERIC Educational Resources Information Center

    Ely, Vivien King

    Intended for reference use by vocational education decision makers, including chief school officers, administrative and supervisory personnel, and advisory councils, this publication contains information on topics to be considered before, during, and after establishing a program for distributive education. A section is devoted to each of the…

  11. Integration of TGS and CTEN assays using the CTEN{_}FIT analysis and databasing program

    SciTech Connect

    Estep, R.

    2000-05-01

    The CTEN{_}FIT program, written for Windows 9x/NT in C++, performs databasing and analysis of combined thermal/epithermal neutron (CTEN) passive and active neutron assay data and integrates that with isotopics results and gamma-ray data from methods such as tomographic gamma scanning (TGS). The binary database is reflected in a companion Excel database that allows extensive customization via Visual Basic for Applications macros. Automated analysis options make the analysis of the data transparent to the assay system operator. Various record browsers and information displays simplified record keeping tasks.

  12. Accelerating Information Retrieval from Profile Hidden Markov Model Databases.

    PubMed

    Tamimi, Ahmad; Ashhab, Yaqoub; Tamimi, Hashem

    2016-01-01

    Profile Hidden Markov Model (Profile-HMM) is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases.

  13. Accelerating Information Retrieval from Profile Hidden Markov Model Databases

    PubMed Central

    Ashhab, Yaqoub; Tamimi, Hashem

    2016-01-01

    Profile Hidden Markov Model (Profile-HMM) is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases. PMID:27875548

  14. MIPS: a database for protein sequences, homology data and yeast genome information.

    PubMed Central

    Mewes, H W; Albermann, K; Heumann, K; Liebl, S; Pfeiffer, F

    1997-01-01

    The MIPS group (Martinsried Institute for Protein Sequences) at the Max-Planck-Institute for Biochemistry, Martinsried near Munich, Germany, collects, processes and distributes protein sequence data within the framework of the tripartite association of the PIR-International Protein Sequence Database (,). MIPS contributes nearly 50% of the data input to the PIR-International Protein Sequence Database. The database is distributed on CD-ROM together with PATCHX, an exhaustive supplement of unique, unverified protein sequences from external sources compiled by MIPS. Through its WWW server (http://www.mips.biochem.mpg.de/ ) MIPS permits internet access to sequence databases, homology data and to yeast genome information. (i) Sequence similarity results from the FASTA program () are stored in the FASTA database for all proteins from PIR-International and PATCHX. The database is dynamically maintained and permits instant access to FASTA results. (ii) Starting with FASTA database queries, proteins have been classified into families and superfamilies (PROT-FAM). (iii) The HPT (hashed position tree) data structure () developed at MIPS is a new approach for rapid sequence and pattern searching. (iv) MIPS provides access to the sequence and annotation of the complete yeast genome (), the functional classification of yeast genes (FunCat) and its graphical display, the 'Genome Browser' (). A CD-ROM based on the JAVA programming language providing dynamic interactive access to the yeast genome and the related protein sequences has been compiled and is available on request. PMID:9016498

  15. Capturing and classifying functional status information in administrative databases.

    PubMed

    Iezzoni, Lisa I; Greenberg, Marjorie S

    2003-01-01

    The health care delivery system aims to improve the functioning of Americans, but little information exists to judge progress toward meeting this goal. Administrative data generated through running and overseeing health care delivery offer considerable information about diagnoses and procedures in coded formats comparable across settings of care. This article explores the issues raised when considering adding coded information about functional status to administrative databases throughout the health care system. The National Committee on Vital and Health Statistics (NCVHS) identified the International Classification of Functioning, Disability and Health (ICF) as the only viable code set for consistently reporting functional status.

  16. MushBase: A Mushroom Information Database Application

    PubMed Central

    Le, Vang Quy; Lee, Hyun-Sook

    2007-01-01

    A database application, namely MushBase, has been built based on Microsoft Access in order to store and manage different kinds of data about mushroom biological information of species, strains and their physiological characteristics such as geometries and growth condition(s). In addition, it is also designed to store another group of information that is experimental data about mushroom classification by Random Amplification of Polymorphic DNA (RAPD). These two groups of information are stored and managed in the way so that it is convenient to retrieve each group of data and to cross-refer between them as well. PMID:24015087

  17. Montana Rivers Information System : Edit/Entry Program User's Manual.

    SciTech Connect

    United States. Bonneville Power Administration; Montana Department of Fish, Wildlife and Parks

    1992-07-01

    The Montana Rivers Information System (MRIS) was initiated to assess the state`s fish, wildlife, and recreation value; and natural cultural, and geologic features. The MRIS is now a set of data bases containing part of the information in the Natural Heritage Program natural features and threatened and endangered species data bases and comprises of the Montana Interagency Stream Fisheries Database; the MDFWP Recreation Database; and the MDFWP Wildlife Geographic Information System. The purpose of this User`s Manual is to describe to the user how to maintain the MRIS database of their choice by updating, changing, deleting, and adding records using the edit/entry programs; and to provide to the user all information and instructions necessary to complete data entry into the MRIS databases.

  18. Development of distributed image database combined with clinical information in hospital information system.

    PubMed

    Ikeda, M; Ishigaki, T; Yamauchi, K

    1995-08-01

    We have developed a distributed image database system composed of the data in our medium-scale PACS that provides diagnostic-quality images and the data in our HIS. INFORMIX software was used to construct the distributed relational database. The data in HIS were retrieved using several programs written in COBOL. Image data in PACS were retrieved using ACR-NEMA protocols. The data retrieved from the HIS database involved medication, disease entities, laboratory test results, etc. Therefore, the image data on a given patient can be retrieved by specifying the name of the disease in our database system. Our method offers a practical one to make a global database system to maintain the integrity of the data in the HIS and the PACS. The combination of image data and disease made it quite easy to make a sample database for developing a computer-aided diagnostic system.

  19. Large-scale Health Information Database and Privacy Protection*1

    PubMed Central

    YAMAMOTO, Ryuichi

    2016-01-01

    Japan was once progressive in the digitalization of healthcare fields but unfortunately has fallen behind in terms of the secondary use of data for public interest. There has recently been a trend to establish large-scale health databases in the nation, and a conflict between data use for public interest and privacy protection has surfaced as this trend has progressed. Databases for health insurance claims or for specific health checkups and guidance services were created according to the law that aims to ensure healthcare for the elderly; however, there is no mention in the act about using these databases for public interest in general. Thus, an initiative for such use must proceed carefully and attentively. The PMDA*2 projects that collect a large amount of medical record information from large hospitals and the health database development project that the Ministry of Health, Labour and Welfare (MHLW) is working on will soon begin to operate according to a general consensus; however, the validity of this consensus can be questioned if issues of anonymity arise. The likelihood that researchers conducting a study for public interest would intentionally invade the privacy of their subjects is slim. However, patients could develop a sense of distrust about their data being used since legal requirements are ambiguous. Nevertheless, without using patients’ medical records for public interest, progress in medicine will grind to a halt. Proper legislation that is clear for both researchers and patients will therefore be highly desirable. A revision of the Act on the Protection of Personal Information is currently in progress. In reality, however, privacy is not something that laws alone can protect; it will also require guidelines and self-discipline. We now live in an information capitalization age. I will introduce the trends in legal reform regarding healthcare information and discuss some basics to help people properly face the issue of health big data and privacy

  20. Improving interoperability between microbial information and sequence databases

    PubMed Central

    Romano, Paolo; Dawyndt, Peter; Piersigilli, Francesca; Swings, Jean

    2005-01-01

    Background Biological resources are essential tools for biomedical research. Their availability is promoted through on-line catalogues. Common Access to Biological Resources and Information (CABRI) is a service for distribution of biological resources and related data collected by 28 European culture collections. Linking this information to bioinformatics databanks can make the collections' holdings more visible after a search in molecular biology databanks and vice-versa. Identification of links to sequence databases can be useful, but annotation and indexing problems, together with compilation errors, immediately arise. In this paper, we present our efforts for the identification of cross-references between CABRI catalogues and the EMBL Data Library and related results. Results An SRS site with both EMBL and CABRI catalogues has been set up. Ad-hoc changes in indexing scripts allowed to achieve homogeneous index keys and SRS link features have been used to identify links between databases. After manual checking and comparison with an alternative procedure, about 67,500 valid cross-references were identified, added to the EMBL Data Library and are now distributed with it. HTML links can be established from EMBL to CABRI network service. Procedures can be executed whenever needed. Conclusion Links between EMBL and CABRI catalogues constitute an improved access to micro-organisms of certified quality and can produce positive effects on biomedical research. Further links between CABRI catalogues and other bioinformatics databases can now easily be defined by using these cross-references. Linking genetic information onto natural resources information may stand model for the integration of other databases containing empirical data on these materials. PMID:16351750

  1. Large-scale Health Information Database and Privacy Protection.

    PubMed

    Yamamoto, Ryuichi

    2016-09-01

    Japan was once progressive in the digitalization of healthcare fields but unfortunately has fallen behind in terms of the secondary use of data for public interest. There has recently been a trend to establish large-scale health databases in the nation, and a conflict between data use for public interest and privacy protection has surfaced as this trend has progressed. Databases for health insurance claims or for specific health checkups and guidance services were created according to the law that aims to ensure healthcare for the elderly; however, there is no mention in the act about using these databases for public interest in general. Thus, an initiative for such use must proceed carefully and attentively. The PMDA projects that collect a large amount of medical record information from large hospitals and the health database development project that the Ministry of Health, Labour and Welfare (MHLW) is working on will soon begin to operate according to a general consensus; however, the validity of this consensus can be questioned if issues of anonymity arise. The likelihood that researchers conducting a study for public interest would intentionally invade the privacy of their subjects is slim. However, patients could develop a sense of distrust about their data being used since legal requirements are ambiguous. Nevertheless, without using patients' medical records for public interest, progress in medicine will grind to a halt. Proper legislation that is clear for both researchers and patients will therefore be highly desirable. A revision of the Act on the Protection of Personal Information is currently in progress. In reality, however, privacy is not something that laws alone can protect; it will also require guidelines and self-discipline. We now live in an information capitalization age. I will introduce the trends in legal reform regarding healthcare information and discuss some basics to help people properly face the issue of health big data and privacy

  2. TOMATOMICS: A Web Database for Integrated Omics Information in Tomato.

    PubMed

    Kudo, Toru; Kobayashi, Masaaki; Terashima, Shin; Katayama, Minami; Ozaki, Soichi; Kanno, Maasa; Saito, Misa; Yokoyama, Koji; Ohyanagi, Hajime; Aoki, Koh; Kubo, Yasutaka; Yano, Kentaro

    2017-01-01

    Solanum lycopersicum (tomato) is an important agronomic crop and a major model fruit-producing plant. To facilitate basic and applied research, comprehensive experimental resources and omics information on tomato are available following their development. Mutant lines and cDNA clones from a dwarf cultivar, Micro-Tom, are two of these genetic resources. Large-scale sequencing data for ESTs and full-length cDNAs from Micro-Tom continue to be gathered. In conjunction with information on the reference genome sequence of another cultivar, Heinz 1706, the Micro-Tom experimental resources have facilitated comprehensive functional analyses. To enhance the efficiency of acquiring omics information for tomato biology, we have integrated the information on the Micro-Tom experimental resources and the Heinz 1706 genome sequence. We have also inferred gene structure by comparison of sequences between the genome of Heinz 1706 and the transcriptome, which are comprised of Micro-Tom full-length cDNAs and Heinz 1706 RNA-seq data stored in the KaFTom and Sequence Read Archive databases. In order to provide large-scale omics information with streamlined connectivity we have developed and maintain a web database TOMATOMICS (http://bioinf.mind.meiji.ac.jp/tomatomics/). In TOMATOMICS, access to the information on the cDNA clone resources, full-length mRNA sequences, gene structures, expression profiles and functional annotations of genes is available through search functions and the genome browser, which has an intuitive graphical interface.

  3. NASA STI program database: Journal coverage (1990-1992)

    NASA Technical Reports Server (NTRS)

    1993-01-01

    Data are given in tabular form on the extent of recent journal accessions (1990-1992) to the NASA Scientific and Technical Information (STI) Database. Journals are presented by country in two ways: first by an alphabetical listing; and second, by the decreasing number of citations extracted from these journals during this period. An appendix containing a statistical summary is included.

  4. Data mining approaches for information retrieval from genomic databases

    NASA Astrophysics Data System (ADS)

    Liu, Donglin; Singh, Gautam B.

    2000-04-01

    Sequence retrieval in genomic databases is used for finding sequences related to a query sequence specified by a user. Comparison is the main part of the retrieval system in genomic databases. An efficient sequence comparison algorithm is critical in bioinformatics. There are several different algorithms to perform sequence comparison, such as the suffix array based database search, divergence measurement, methods that rely upon the existence of a local similarity between the query sequence and sequences in the database, or common mutual information between query and sequences in DB. In this paper we have described a new method for DNA sequence retrieval based on data mining techniques. Data mining tools generally find patterns among data and have been successfully applied in industries to improve marketing, sales, and customer support operations. We have applied the descriptive data mining techniques to find relevant patterns that are significant for comparing genetic sequences. Relevance feedback score based on common patterns is developed and employed to compute distance between sequences. The contigs of human chromosomes are used to test the retrieval accuracy and the experimental results are presented.

  5. CCSI: a database providing chromatin-chromatin spatial interaction information.

    PubMed

    Xie, Xiaowei; Ma, Wenbin; Songyang, Zhou; Luo, Zhenhua; Huang, Junfeng; Dai, Zhiming; Xiong, Yuanyan

    2016-01-01

    Distal regulatory elements have been shown to regulate gene transcription through spatial interactions, and single nucleotide polymorphisms (SNPs) are linked with distal gene expression by spatial proximity, which helps to explain the causal role of disease-associated SNPs in non-coding region. Therefore, studies on spatial interactions between chromatin have created a new avenue for elucidating the mechanism of transcriptional regulation in disease pathogenesis. Recently, a growing number of chromatin interactions have been revealed by means of 3C, 4C, 5C, ChIA-PET and Hi-C technologies. To interpret and utilize these interactions, we constructed chromatin-chromatin spatial interaction (CCSI) database by integrating and annotating 91 sets of chromatin interaction data derived from published literature, UCSC database and NCBI GEO database, resulting in a total of 3,017,962 pairwise interactions (false discovery rate < 0.05), covering human, mouse and yeast. A web interface has been designed to provide access to the chromatin interactions. The main features of CCSI are (i) showing chromatin interactions and corresponding genes, enhancers and SNPs within the regions in the search page; (ii) offering complete interaction datasets, enhancer and SNP information in the download page; and (iii) providing analysis pipeline for the annotation of interaction data. In conclusion, CCSI will facilitate exploring transcriptional regulatory mechanism in disease pathogenesis associated with spatial interactions among genes, regulatory regions and SNPs. Database URL: http://songyanglab.sysu.edu.cn/ccsi.

  6. MPOD: A Material Property Open Database linked to structural information

    NASA Astrophysics Data System (ADS)

    Pepponi, Giancarlo; Gražulis, Saulius; Chateigner, Daniel

    2012-08-01

    Inspired by the Crystallography Open Database (COD), the Material Properties Open Database (MPOD) was given birth. MPOD aims at collecting and making publicly available at no charge tensorial properties (including scalar properties) of phases and linking such properties to structural information of the COD when available. MPOD files are written with the STAR file syntax, used and developed for the Crystallographic Information Files. A dictionary containing new definitions has been written according to the Dictionary Definition Language 1, although some tricks were adopted to allow for multiple entries still avoiding ambiguousness. The initial set includes mechanical properties, elastic stiffness and compliance, internal friction; electrical properties, resistivity, dielectric permittivity and stiffness, thermodynamic properties, heat capacity, thermal conductivity, diffusivity and expansion; electromechanical properties, piezoelectricity, electrostriction, electromechanical coupling; optical properties; piezooptic and photoelastic properties; superconducting properties, critical fields, penetration and coherence lengths. Properties are reported in MPOD files where the original published paper containing the data is cited and structural and experimental information is also given. One MPOD file contains information relative to only one publication and one phase. The files and the information contained therein can also be consulted on-line at http://www.materialproperties.org.

  7. Materials Inventory Database for the Light Water Reactor Sustainability Program

    SciTech Connect

    Kazi Ahmed; Shannon M. Bragg-Sitton

    2013-08-01

    Scientific research involves the purchasing, processing, characterization, and fabrication of many sample materials. The history of such materials can become complicated over their lifetime – materials might be cut into pieces or moved to various storage locations, for example. A database with built-in functions to track these kinds of processes facilitates well-organized research. The Material Inventory Database Accounting System (MIDAS) is an easy-to-use tracking and reference system for such items. The Light Water Reactor Sustainability Program (LWRS), which seeks to advance the long-term reliability and productivity of existing nuclear reactors in the United States through multiple research pathways, proposed MIDAS as an efficient way to organize and track all items used in its research. The database software ensures traceability of all items used in research using built-in functions which can emulate actions on tracked items – fabrication, processing, splitting, and more – by performing operations on the data. MIDAS can recover and display the complete history of any item as a simple report. To ensure the database functions suitably for the organization of research, it was developed alongside a specific experiment to test accident tolerant nuclear fuel cladding under the LWRS Advanced Light Water Reactor Nuclear Fuels Pathway. MIDAS kept track of materials used in this experiment from receipt at the laboratory through all processes, test conduct and, ultimately, post-test analysis. By the end of this process, the database proved to be right tool for this program. The database software will help LWRS more efficiently conduct research experiments, from simple characterization tests to in-reactor experiments. Furthermore, MIDAS is a universal tool that any other research team could use to organize their material inventory.

  8. Assessment of a Library Science Program Specializing in Chemical Information.

    ERIC Educational Resources Information Center

    Wiggins, Gary; Monnier, Cynthia

    1994-01-01

    Reports on a survey of Indiana University Master in Library Science (M.L.S.)-Chemical Information Specialist program graduates. Information includes graduates' educational background; the nature of first jobs and current positions held; and databases most frequently used. Graduates generally favored more training in computer skills, patent…

  9. Application Program Interface for the Orion Aerodynamics Database

    NASA Technical Reports Server (NTRS)

    Robinson, Philip E.; Thompson, James

    2013-01-01

    The Application Programming Interface (API) for the Crew Exploration Vehicle (CEV) Aerodynamic Database has been developed to provide the developers of software an easily implemented, fully self-contained method of accessing the CEV Aerodynamic Database for use in their analysis and simulation tools. The API is programmed in C and provides a series of functions to interact with the database, such as initialization, selecting various options, and calculating the aerodynamic data. No special functions (file read/write, table lookup) are required on the host system other than those included with a standard ANSI C installation. It reads one or more files of aero data tables. Previous releases of aerodynamic databases for space vehicles have only included data tables and a document of the algorithm and equations to combine them for the total aerodynamic forces and moments. This process required each software tool to have a unique implementation of the database code. Errors or omissions in the documentation, or errors in the implementation, led to a lengthy and burdensome process of having to debug each instance of the code. Additionally, input file formats differ for each space vehicle simulation tool, requiring the aero database tables to be reformatted to meet the tool s input file structure requirements. Finally, the capabilities for built-in table lookup routines vary for each simulation tool. Implementation of a new database may require an update to and verification of the table lookup routines. This may be required if the number of dimensions of a data table exceeds the capability of the simulation tools built-in lookup routines. A single software solution was created to provide an aerodynamics software model that could be integrated into other simulation and analysis tools. The highly complex Orion aerodynamics model can then be quickly included in a wide variety of tools. The API code is written in ANSI C for ease of portability to a wide variety of systems. The

  10. Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis

    PubMed Central

    Peng, Zhi-yu; Zhou, Xin; Li, Linchuan; Yu, Xiangchun; Li, Hongjiang; Jiang, Zhiqiang; Cao, Guangyu; Bai, Mingyi; Wang, Xingchun; Jiang, Caifu; Lu, Haibin; Hou, Xianhui; Qu, Lijia; Wang, Zhiyong; Zuo, Jianru; Fu, Xiangdong; Su, Zhen; Li, Songgang; Guo, Hongwei

    2009-01-01

    Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in responses to numerous plant hormones, including auxin, gibberellin, cytokinin, abscisic acid, ethylene, jasmonic acid, salicylic acid, and brassinosteroid. Here, we develop an Arabidopsis hormone database, which aims to provide a systematic and comprehensive view of genes participating in plant hormonal regulation, as well as morphological phenotypes controlled by plant hormones. Based on data from mutant studies, transgenic analysis and gene ontology (GO) annotation, we have identified a total of 1026 genes in the Arabidopsis genome that participate in plant hormone functions. Meanwhile, a phenotype ontology is developed to precisely describe myriad hormone-regulated morphological processes with standardized vocabularies. A web interface (http://ahd.cbi.pku.edu.cn) would allow users to quickly get access to information about these hormone-related genes, including sequences, functional category, mutant information, phenotypic description, microarray data and linked publications. Several applications of this database in studying plant hormonal regulation and hormone cross-talk will be presented and discussed. PMID:19015126

  11. Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis.

    PubMed

    Peng, Zhi-yu; Zhou, Xin; Li, Linchuan; Yu, Xiangchun; Li, Hongjiang; Jiang, Zhiqiang; Cao, Guangyu; Bai, Mingyi; Wang, Xingchun; Jiang, Caifu; Lu, Haibin; Hou, Xianhui; Qu, Lijia; Wang, Zhiyong; Zuo, Jianru; Fu, Xiangdong; Su, Zhen; Li, Songgang; Guo, Hongwei

    2009-01-01

    Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in responses to numerous plant hormones, including auxin, gibberellin, cytokinin, abscisic acid, ethylene, jasmonic acid, salicylic acid, and brassinosteroid. Here, we develop an Arabidopsis hormone database, which aims to provide a systematic and comprehensive view of genes participating in plant hormonal regulation, as well as morphological phenotypes controlled by plant hormones. Based on data from mutant studies, transgenic analysis and gene ontology (GO) annotation, we have identified a total of 1026 genes in the Arabidopsis genome that participate in plant hormone functions. Meanwhile, a phenotype ontology is developed to precisely describe myriad hormone-regulated morphological processes with standardized vocabularies. A web interface (http://ahd.cbi.pku.edu.cn) would allow users to quickly get access to information about these hormone-related genes, including sequences, functional category, mutant information, phenotypic description, microarray data and linked publications. Several applications of this database in studying plant hormonal regulation and hormone cross-talk will be presented and discussed.

  12. An Integrated Chemical Information Program

    NASA Astrophysics Data System (ADS)

    Somerville, Arleen N.; Cardinal, Susan K.

    2003-05-01

    Chemical educators have long recognized the importance of teaching their students how to locate and use chemical information. Many articles have been written about stand-alone courses and about efforts that focus on teaching specific topics within a course or two. At the University of Rochester, however, chemical information instruction is integrated into courses throughout the undergraduate and graduate curriculum in a sequential manner. Students utilize their information-seeking skills in completing course work and then this information serves as the base on which to continuously build new skills. This article describes the program as implemented over four years, notes how the faculty and librarian work together in conjunction with student input, and depicts how the instruction contributes to the educational value of the courses.

  13. Visualizing uncertainty for geographical information in the global terrorism database

    NASA Astrophysics Data System (ADS)

    Jones, Josh; Chang, Remco; Butkiewicz, Thomas; Ribarsky, William

    2008-04-01

    Presenting information on a geopolitical map can offer powerful insight into a problem by leveraging an individual's innate capacity to discover patterns and to use map-related cues to incorporate pre-existing knowledge. This mode of presentation is not without its flaws, however, as the act of placing information at specific coordinates can imply a false sense of the data's geo-spatial certainty. Traditional uncertainty visualization techniques, such as those that change primitive attributes or employ animation, can create large amounts of clutter or actively distract when visualizing geospatially uncertain events within large datasets. To effectively identify geo-spatial trends within the Global Terrorism Database of the START Center, we have developed a novel usage of squarified treemaps that maintains the strengths of traditional map-viewing but incorporates some measure of data verity.

  14. Information Systems - Cancer Imaging Program

    Cancer.gov

    The Lung Image Database Consortium (LIDC) represents an effort by CIP grantees in a consortium to create a database of spiral CT images of the lung for use in CAD (computer-aided detection) algorithm research. The Imaging Database Resources Initiative (IDRI) is extending the efforts of the LIDC, to create a larger database of spiral CT imaging of the lung for use in CAD algorithm research. Image Archive Resources contains links to Web sites related to the interests of the NCI CIP Image Archive Committee. The Molecular Imaging and Contrast Agent Database (MICAD) is a database of research data on in vivo molecular imaging and contrast agents.

  15. Strategies for Teaching Students to Process Information Using Databases.

    ERIC Educational Resources Information Center

    Rooze, Gene E.

    The database management system or computerized database is an important tool for teaching thinking in the social studies. But what the teacher does to teach the student about databases, to use prepared databases, to organize their data, to direct their research, and to draw conclusions using this teaching device is just as important. The Direct…

  16. Evaluation of the National Database of Nursing Quality Indicators (NDNQI) Training Program on Pressure Ulcers.

    PubMed

    Bergquist-Beringer, Sandra; Davidson, Jan; Agosto, Carolyn; Linde, Norma K; Abel, Marla; Spurling, Kara; Dunton, Nancy; Christopher, Angela

    2009-06-01

    The National Database of Nursing Quality Indicators (NDNQI) Pressure Ulcer Training Program was developed to improve nursing accuracy and reliability in identifying and staging pressure ulcers and differentiating hospital- and unit-acquired from community-acquired pressure ulcers. Of 5,200 individuals who completed the training program within 5 months of release, 937 provided written evaluation comments. Four major themes emerged from content analysis of the evaluation remarks: pressure ulcer and other wound pictures; accuracy and clarity of content; program design and technology; and the educational/informational experience. Reviewers most frequently commented on their positive learning experience. Program components that enhanced the educational experience included the array of pressure ulcer pictures at each stage and pictures of other wounds. Clarity of content, program design, and technological problems were barriers to reviewer satisfaction. Findings suggest the NDNQI Pressure Ulcer Training Program was effective for educating staff nurses on pressure ulcer identification and staging.

  17. Industrial information database service by personal computer network 'Saitamaken Industrial Information System'

    NASA Astrophysics Data System (ADS)

    Sugahara, Keiji

    Saitamaken Industrial Information System provides onlined database services, which does not rely on computers for the whole operation, but utilizes computers, optical disk files or facsimiles for certain operations as we think fit. It employes the method of providing information for various, outputs, that is, image information is sent from optical disk files to facsimiles, or other information is provided from computers to terminals as well as facsimiles. Locating computers as a core in the system, it enables integrated operations. The system at terminal side was developed separately with functions such as operation by turnkey style, down-loading of statistical information and the newest menu.

  18. NATional CARBon Sequestration Database and Geographic Information System (NATCARB)

    SciTech Connect

    Timothy R. Carr

    2006-01-09

    This report provides a brief summary of the milestone for Quarter 1 of 2006 of the NATional CARBon Sequestration Database and Geographic Information System (NATCARB) This milestone assigns consistent symbology to the ''National CO{sub 2} Facilities'' GIS layer on the NATCARB website. As a default, CO{sub 2} sources provided by the Regional Carbon Sequestration Partnerships and the National Group are now all one symbol type. In addition for sinks such as oil and gas fields where data is drawn from multiple partnerships, the symbology is given a single color. All these modifications are accomplished as the layer is passed through the national portal (www.natcarb.org). This documentation is sent to National Energy Technology Laboratory (NETL) as a Topical Report and will be included in the next Annual Report.

  19. TIDBIT - the INEL database of BNCT information and treatment

    SciTech Connect

    Mancuso, C.A.

    1995-11-01

    The INEL Database of BNCT Information and Treatment (TIDBIT) has been under development for several years. Late in 1993, a new software development team took over the project and did and assessment of the current implementation status, and determined that the user interface was unsatisfactory for the expected users and that the data structures were out of step with the current state of reality. The team evaluated several tools that would improve the user interface to make the system easier to use. Uniface turned out to be the product of choice. During 1994, TIDBIT got its name, underwent a complete change of appearance, had a major overhaul to the data structures that support the application, and system documentation was begun. A prototype of the system was demonstrated in September 1994.

  20. Materials And Processes Technical Information System (MAPTIS) LDEF materials database

    NASA Technical Reports Server (NTRS)

    Davis, John M.; Strickland, John W.

    1992-01-01

    The Materials and Processes Technical Information System (MAPTIS) is a collection of materials data which was computerized and is available to engineers in the aerospace community involved in the design and development of spacecraft and related hardware. Consisting of various database segments, MAPTIS provides the user with information such as material properties, test data derived from tests specifically conducted for qualification of materials for use in space, verification and control, project management, material information, and various administrative requirements. A recent addition to the project management segment consists of materials data derived from the LDEF flight. This tremendous quantity of data consists of both pre-flight and post-flight data in such diverse areas as optical/thermal, mechanical and electrical properties, atomic concentration surface analysis data, as well as general data such as sample placement on the satellite, A-O flux, equivalent sun hours, etc. Each data point is referenced to the primary investigator(s) and the published paper from which the data was taken. The MAPTIS system is envisioned to become the central location for all LDEF materials data. This paper consists of multiple parts, comprising a general overview of the MAPTIS System and the types of data contained within, and the specific LDEF data element and the data contained in that segment.

  1. Oryzabase. An integrated biological and genome information database for rice.

    PubMed

    Kurata, Nori; Yamazaki, Yukiko

    2006-01-01

    The aim of Oryzabase is to create a comprehensive view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information (http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp). The database contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. The anatomical description of rice development is unique and is the first known representation for rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. The systematic presentation of a large number of rice mutant and mutant trait genes is indispensable, as is description of research in wild strains, core collections, and their detailed characterization. Several genetic, physical, and expression maps with full genome and cDNA sequences are also combined with biological data in Oryzabase. These datasets, when pooled together, could provide a useful tool for gaining greater knowledge about the life cycle of rice, the relationship between phenotype and gene function, and rice genetic diversity. For exchanging community information, Oryzabase publishes the Rice Genetics Newsletter organized by the Rice Genetics Cooperative and provides a mailing service, rice-e-net/rice-net.

  2. Multigenerational information: the example of the Icelandic Genealogy Database.

    PubMed

    Tulinius, Hrafn

    2011-01-01

    The first part of the chapter describes the Icelandic Genealogical Database, how it was created, what it contains, and how it operates. In the second part, an overview of research accomplished with material from the database is given.

  3. Database resources of the National Center for Biotechnology Information: 2002 update

    PubMed Central

    Wheeler, David L.; Church, Deanna M.; Lash, Alex E.; Leipe, Detlef D.; Madden, Thomas L.; Pontius, Joan U.; Schuler, Gregory D.; Schriml, Lynn M.; Tatusova, Tatiana A.; Wagner, Lukas; Rapp, Barbara A.

    2002-01-01

    In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources that operate on the data in GenBank and a variety of other biological data made available through NCBI’s web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, HomoloGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing, Human MapViewer, Human¡VMouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheritance in Man (OMIM), the Molecular Modeling Database (MMDB) and the Conserved Domain Database (CDD). Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov. PMID:11752242

  4. Sports Information Online: Searching the SPORT Database and Tips for Finding Sports Medicine Information Online.

    ERIC Educational Resources Information Center

    Janke, Richard V.; And Others

    1988-01-01

    The first article describes SPORT, a database providing international coverage of athletics and physical education, and compares it to other online services in terms of coverage, thesauri, possible search strategies, and actual usage. The second article reviews available online information on sports medicine. (CLB)

  5. Sports Information Online: Searching the SPORT Database and Tips for Finding Sports Medicine Information Online.

    ERIC Educational Resources Information Center

    Janke, Richard V.; And Others

    1988-01-01

    The first article describes SPORT, a database providing international coverage of athletics and physical education, and compares it to other online services in terms of coverage, thesauri, possible search strategies, and actual usage. The second article reviews available online information on sports medicine. (CLB)

  6. The National Center for Biotechnology Information's Protein Clusters Database

    PubMed Central

    Klimke, William; Agarwala, Richa; Badretdin, Azat; Chetvernin, Slava; Ciufo, Stacy; Fedorov, Boris; Kiryutin, Boris; O’Neill, Kathleen; Resch, Wolfgang; Resenchuk, Sergei; Schafer, Susan; Tolstoy, Igor; Tatusova, Tatiana

    2009-01-01

    Rapid increases in DNA sequencing capabilities have led to a vast increase in the data generated from prokaryotic genomic studies, which has been a boon to scientists studying micro-organism evolution and to those who wish to understand the biological underpinnings of microbial systems. The NCBI Protein Clusters Database (ProtClustDB) has been created to efficiently maintain and keep the deluge of data up to date. ProtClustDB contains both curated and uncurated clusters of proteins grouped by sequence similarity. The May 2008 release contains a total of 285 386 clusters derived from over 1.7 million proteins encoded by 3806 nt sequences from the RefSeq collection of complete chromosomes and plasmids from four major groups: prokaryotes, bacteriophages and the mitochondrial and chloroplast organelles. There are 7180 clusters containing 376 513 proteins with curated gene and protein functional annotation. PubMed identifiers and external cross references are collected for all clusters and provide additional information resources. A suite of web tools is available to explore more detailed information, such as multiple alignments, phylogenetic trees and genomic neighborhoods. ProtClustDB provides an efficient method to aggregate gene and protein annotation for researchers and is available at http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters. PMID:18940865

  7. The National Center for Biotechnology Information's Protein Clusters Database.

    PubMed

    Klimke, William; Agarwala, Richa; Badretdin, Azat; Chetvernin, Slava; Ciufo, Stacy; Fedorov, Boris; Kiryutin, Boris; O'Neill, Kathleen; Resch, Wolfgang; Resenchuk, Sergei; Schafer, Susan; Tolstoy, Igor; Tatusova, Tatiana

    2009-01-01

    Rapid increases in DNA sequencing capabilities have led to a vast increase in the data generated from prokaryotic genomic studies, which has been a boon to scientists studying micro-organism evolution and to those who wish to understand the biological underpinnings of microbial systems. The NCBI Protein Clusters Database (ProtClustDB) has been created to efficiently maintain and keep the deluge of data up to date. ProtClustDB contains both curated and uncurated clusters of proteins grouped by sequence similarity. The May 2008 release contains a total of 285 386 clusters derived from over 1.7 million proteins encoded by 3806 nt sequences from the RefSeq collection of complete chromosomes and plasmids from four major groups: prokaryotes, bacteriophages and the mitochondrial and chloroplast organelles. There are 7180 clusters containing 376 513 proteins with curated gene and protein functional annotation. PubMed identifiers and external cross references are collected for all clusters and provide additional information resources. A suite of web tools is available to explore more detailed information, such as multiple alignments, phylogenetic trees and genomic neighborhoods. ProtClustDB provides an efficient method to aggregate gene and protein annotation for researchers and is available at http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters.

  8. 21 CFR 830.350 - Correction of information submitted to the Global Unique Device Identification Database.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... Unique Device Identification Database. 830.350 Section 830.350 Food and Drugs FOOD AND DRUG... Global Unique Device Identification Database § 830.350 Correction of information submitted to the Global Unique Device Identification Database. (a) If FDA becomes aware that any information submitted to...

  9. GLOBE Program's Data and Information System

    NASA Astrophysics Data System (ADS)

    Memarsadeghi, N.; Overoye, D.; Lewis, C.; Butler, D. M.; Ramapriyan, H.

    2016-12-01

    "The Global Learning and Observations to Benefit the Environment (GLOBE) Program is an international science and education program that provides students and the public worldwide with the opportunity to participate in data collection and the scientific process, and contribute meaningfully to our understanding of the Earth system and global environment" (www.globe.gov ). GLOBE Program has a rich community of students, teachers, scientists, trainers, country coordinators, and alumni across the world, technologically spanning both high- and low-end users. There are 117 GLOBE participating countries from around the world. GLOBE's Science data protocols and educational material span atmosphere, biosphere, hydrosphere, soil (pedosphere), and Earth as a System scientific areas (http://www.globe.gov/do-globe/globe-teachers-guide). GLOBE's Data and Information System (DIS), when first introduced in 1995, was a cutting edge system that was well-received and innovative for its time. However, internet-based technologies have changed dramatically since then. Projects to modernize and evolve the GLOBE DIS started in 2010, resulting in today's GLOBE DIS. The current GLOBE DIS is now built upon the latest information technologies and is engaging and supporting the user community with advanced tools and services to further the goals of the GLOBE Program. GLOBE DIS consists of over 20 years of observation and training data, a rich set of software systems and applications for data entry, visualization, and analysis, as well as tools for training users in various science data protocols and enabling collaborations among members of the international user community. We present the existing GLOBE DIS, application technologies, and lessons learned for their operations, development, sustaining engineering, and data management practices. Examples of GLOBE DIS technologies include Liferay System for integrated user and content management, a Postgress/PostGIS database, Ruby on Rails for Data

  10. Knowledge Discovery in Variant Databases Using Inductive Logic Programming

    PubMed Central

    Nguyen, Hoan; Luu, Tien-Dao; Poch, Olivier; Thompson, Julie D.

    2013-01-01

    Understanding the effects of genetic variation on the phenotype of an individual is a major goal of biomedical research, especially for the development of diagnostics and effective therapeutic solutions. In this work, we describe the use of a recent knowledge discovery from database (KDD) approach using inductive logic programming (ILP) to automatically extract knowledge about human monogenic diseases. We extracted background knowledge from MSV3d, a database of all human missense variants mapped to 3D protein structure. In this study, we identified 8,117 mutations in 805 proteins with known three-dimensional structures that were known to be involved in human monogenic disease. Our results help to improve our understanding of the relationships between structural, functional or evolutionary features and deleterious mutations. Our inferred rules can also be applied to predict the impact of any single amino acid replacement on the function of a protein. The interpretable rules are available at http://decrypthon.igbmc.fr/kd4v/. PMID:23589683

  11. Using a Relational Database to Index Infectious Disease Information

    PubMed Central

    Brown, Jay A.

    2010-01-01

    Mapping medical knowledge into a relational database became possible with the availability of personal computers and user-friendly database software in the early 1990s. To create a database of medical knowledge, the domain expert works like a mapmaker to first outline the domain and then add the details, starting with the most prominent features. The resulting “intelligent database” can support the decisions of healthcare professionals. The intelligent database described in this article contains profiles of 275 infectious diseases. Users can query the database for all diseases matching one or more specific criteria (symptom, endemic region of the world, or epidemiological factor). Epidemiological factors include sources (patients, water, soil, or animals), routes of entry, and insect vectors. Medical and public health professionals could use such a database as a decision-support software tool. PMID:20623018

  12. 7 CFR 220.21 - Program information.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 4 2011-01-01 2011-01-01 false Program information. 220.21 Section 220.21 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS SCHOOL BREAKFAST PROGRAM § 220.21 Program information. School Food Authorities...

  13. 7 CFR 220.21 - Program information.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 4 2012-01-01 2012-01-01 false Program information. 220.21 Section 220.21 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS SCHOOL BREAKFAST PROGRAM § 220.21 Program information. School Food Authorities...

  14. 7 CFR 220.21 - Program information.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 4 2013-01-01 2013-01-01 false Program information. 220.21 Section 220.21 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS SCHOOL BREAKFAST PROGRAM § 220.21 Program information. School Food Authorities...

  15. Selecting Data-Base Management Software for Microcomputers in Libraries and Information Units.

    ERIC Educational Resources Information Center

    Pieska, K. A. O.

    1986-01-01

    Presents a model for the evaluation of database management systems software from the viewpoint of librarians and information specialists. The properties of data management systems, database management systems, and text retrieval systems are outlined and compared. (10 references) (CLB)

  16. Developing an Information and Records Management Program.

    ERIC Educational Resources Information Center

    Rutledge, Juli G.; Kartis, Alexia M.

    1984-01-01

    The need for information controls for college records management programs and the elements of program organization, planning, and management are discussed. Conditions at institutions that indicate a flaw in information control are identified, along with the benefits of a sound records management program. The management of an information and…

  17. Developing an Information and Records Management Program.

    ERIC Educational Resources Information Center

    Rutledge, Juli G.; Kartis, Alexia M.

    1984-01-01

    The need for information controls for college records management programs and the elements of program organization, planning, and management are discussed. Conditions at institutions that indicate a flaw in information control are identified, along with the benefits of a sound records management program. The management of an information and…

  18. GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

    PubMed

    Lee, Jennifer M; Davenport, Guy F; Marshall, David; Ellis, T H Noel; Ambrose, Michael J; Dicks, Jo; van Hintum, Theo J L; Flavell, Andrew J

    2005-10-01

    The extensive germplasm resource collections that are now available for major crop plants and their wild relatives will increasingly provide valuable biological and bioinformatics resources for plant physiologists and geneticists to dissect the molecular basis of key traits and to develop highly adapted plant material to sustain future breeding programs. A key to the efficient deployment of these resources is the development of information systems that will enable the collection and storage of biological information for these plant lines to be integrated with the molecular information that is now becoming available through the use of high-throughput genomics and post-genomics technologies. The GERMINATE database has been designed to hold a diverse variety of data types, ranging from molecular to phenotypic, and to allow querying between such data for any plant species. Data are stored in GERMINATE in a technology-independent manner, such that new technologies can be accommodated in the database as they emerge, without modification of the underlying schema. Users can access data in GERMINATE databases either via a lightweight Perl-CGI Web interface or by the more complex Genomic Diversity and Phenotype Connection software. GERMINATE is released under the GNU General Public License and is available at http://germinate.scri.sari.ac.uk/germinate/.

  19. The integrated web service and genome database for agricultural plants with biotechnology information.

    PubMed

    Kim, Changkug; Park, Dongsuk; Seol, Youngjoo; Hahn, Jangho

    2011-01-01

    The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage.

  20. Co-PylotDB - A Python-Based Single-Window User Interface for Transmitting Information to a Database

    SciTech Connect

    Barnette, Daniel W.

    2012-01-05

    Co-PylotDB, written completely in Python, provides a user interface (UI) with which to select user and data file(s), directories, and file content, and provide or capture various other information for sending data collected from running any computer program to a pre-formatted database table for persistent storage. The interface allows the user to select input, output, make, source, executable, and qsub files. It also provides fields for specifying the machine name on which the software was run, capturing compile and execution lines, and listing relevant user comments. Data automatically captured by Co-PylotDB and sent to the database are user, current directory, local hostname, current date, and time of send. The UI provides fields for logging into a local or remote database server, specifying a database and a table, and sending the information to the selected database table. If a server is not available, the UI provides for saving the command that would have saved the information to a database table for either later submission or for sending via email to a collaborator who has access to the desired database.

  1. State-Funded Informational Databases: You May Lose Them Even if You Use Them!

    ERIC Educational Resources Information Center

    Bell, Mary Ann

    2005-01-01

    State-funded informational databases are a boon to students, teachers, and teacher-librarians, but as states struggle with budgets, funding for these resources is endangered survey results on the status of databases in all fifty states along with suggestions for keeping the databases or dealing with their absence follow. Today's students and…

  2. 24 CFR 81.72 - Public-use database and public information.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 24 Housing and Urban Development 1 2010-04-01 2010-04-01 false Public-use database and public... Public-use database and public information. (a) General. Except as provided in paragraph (c) of this section, the Secretary shall establish and make available for public use, a public-use database...

  3. 24 CFR 81.72 - Public-use database and public information.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 24 Housing and Urban Development 1 2014-04-01 2014-04-01 false Public-use database and public... Public-use database and public information. (a) General. Except as provided in paragraph (c) of this section, the Secretary shall establish and make available for public use, a public-use database...

  4. 24 CFR 81.72 - Public-use database and public information.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 24 Housing and Urban Development 1 2013-04-01 2013-04-01 false Public-use database and public... Public-use database and public information. (a) General. Except as provided in paragraph (c) of this section, the Secretary shall establish and make available for public use, a public-use database...

  5. 24 CFR 81.72 - Public-use database and public information.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 24 Housing and Urban Development 1 2011-04-01 2011-04-01 false Public-use database and public... Public-use database and public information. (a) General. Except as provided in paragraph (c) of this section, the Secretary shall establish and make available for public use, a public-use database...

  6. 24 CFR 81.72 - Public-use database and public information.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 24 Housing and Urban Development 1 2012-04-01 2012-04-01 false Public-use database and public... Public-use database and public information. (a) General. Except as provided in paragraph (c) of this section, the Secretary shall establish and make available for public use, a public-use database...

  7. 47 CFR 76.1512 - Programming information.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 47 Telecommunication 4 2014-10-01 2014-10-01 false Programming information. 76.1512 Section 76... MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Open Video Systems § 76.1512 Programming information. (a) An... for the purpose of selecting programming on the open video system, or in the way such material or...

  8. 47 CFR 76.1512 - Programming information.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 4 2010-10-01 2010-10-01 false Programming information. 76.1512 Section 76... MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Open Video Systems § 76.1512 Programming information. (a) An... for the purpose of selecting programming on the open video system, or in the way such material or...

  9. 47 CFR 76.1512 - Programming information.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 47 Telecommunication 4 2012-10-01 2012-10-01 false Programming information. 76.1512 Section 76... MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Open Video Systems § 76.1512 Programming information. (a) An... for the purpose of selecting programming on the open video system, or in the way such material or...

  10. 47 CFR 76.1512 - Programming information.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 47 Telecommunication 4 2013-10-01 2013-10-01 false Programming information. 76.1512 Section 76... MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Open Video Systems § 76.1512 Programming information. (a) An... for the purpose of selecting programming on the open video system, or in the way such material or...

  11. A Request Oriented Information Selection Program.

    ERIC Educational Resources Information Center

    Ryan, Elizabeth

    The program is a general purpose information retrieval program which can be used with a file of fixed format documents. Designed to be used by noncomputer personnel, the program provides flexibility in search requests and output format, which enable it to satisfy users' requests for information promptly and inexpensively. To insure easy adaptation…

  12. Working with HITRAN Database Using Hapi: HITRAN Application Programming Interface

    NASA Astrophysics Data System (ADS)

    Kochanov, Roman V.; Hill, Christian; Wcislo, Piotr; Gordon, Iouli E.; Rothman, Laurence S.; Wilzewski, Jonas

    2015-06-01

    A HITRAN Application Programing Interface (HAPI) has been developed to allow users on their local machines much more flexibility and power. HAPI is a programming interface for the main data-searching capabilities of the new "HITRANonline" web service (http://www.hitran.org). It provides the possibility to query spectroscopic data from the HITRAN database in a flexible manner using either functions or query language. Some of the prominent current features of HAPI are: a) Downloading line-by-line data from the HITRANonline site to a local machine b) Filtering and processing the data in SQL-like fashion c) Conventional Python structures (lists, tuples, and dictionaries) for representing spectroscopic data d) Possibility to use a large set of third-party Python libraries to work with the data e) Python implementation of the HT lineshape which can be reduced to a number of conventional line profiles f) Python implementation of total internal partition sums (TIPS-2011) for spectra simulations g) High-resolution spectra calculation accounting for pressure, temperature and optical path length h) Providing instrumental functions to simulate experimental spectra i) Possibility to extend HAPI's functionality by custom line profiles, partitions sums and instrumental functions Currently the API is a module written in Python and uses Numpy library providing fast array operations. The API is designed to deal with data in multiple formats such as ASCII, CSV, HDF5 and XSAMS. This work has been supported by NASA Aura Science Team Grant NNX14AI55G and NASA Planetary Atmospheres Grant NNX13AI59G. L.S. Rothman et al. JQSRT, Volume 130, 2013, Pages 4-50 N.H. Ngo et al. JQSRT, Volume 129, November 2013, Pages 89-100 A. L. Laraia at al. Icarus, Volume 215, Issue 1, September 2011, Pages 391-400

  13. [Cystic Fibrosis Cloud database: An information system for storage and management of clinical and microbiological data of cystic fibrosis patients].

    PubMed

    Prieto, Claudia I; Palau, María J; Martina, Pablo; Achiary, Carlos; Achiary, Andrés; Bettiol, Marisa; Montanaro, Patricia; Cazzola, María L; Leguizamón, Mariana; Massillo, Cintia; Figoli, Cecilia; Valeiras, Brenda; Perez, Silvia; Rentería, Fernando; Diez, Graciela; Yantorno, Osvaldo M; Bosch, Alejandra

    2016-01-01

    The epidemiological and clinical management of cystic fibrosis (CF) patients suffering from acute pulmonary exacerbations or chronic lung infections demands continuous updating of medical and microbiological processes associated with the constant evolution of pathogens during host colonization. In order to monitor the dynamics of these processes, it is essential to have expert systems capable of storing and subsequently extracting the information generated from different studies of the patients and microorganisms isolated from them. In this work we have designed and developed an on-line database based on an information system that allows to store, manage and visualize data from clinical studies and microbiological analysis of bacteria obtained from the respiratory tract of patients suffering from cystic fibrosis. The information system, named Cystic Fibrosis Cloud database is available on the http://servoy.infocomsa.com/cfc_database site and is composed of a main database and a web-based interface, which uses Servoy's product architecture based on Java technology. Although the CFC database system can be implemented as a local program for private use in CF centers, it can also be used, updated and shared by different users who can access the stored information in a systematic, practical and safe manner. The implementation of the CFC database could have a significant impact on the monitoring of respiratory infections, the prevention of exacerbations, the detection of emerging organisms, and the adequacy of control strategies for lung infections in CF patients.

  14. 47 CFR 76.1512 - Programming information.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 4 2011-10-01 2011-10-01 false Programming information. 76.1512 Section 76... MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Open Video Systems § 76.1512 Programming information. (a) An... with regard to material or information (including advertising) provided by the operator to subscribers...

  15. Applied Information Systems Research Program Workshop

    NASA Technical Reports Server (NTRS)

    Bredekamp, Joe

    1991-01-01

    Viewgraphs on Applied Information Systems Research Program Workshop are presented. Topics covered include: the Earth Observing System Data and Information System; the planetary data system; Astrophysics Data System project review; OAET Computer Science and Data Systems Programs; the Center of Excellence in Space Data and Information Sciences; and CASIS background.

  16. 76 FR 10262 - Information Security Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-24

    ... 46 CFR Part 503 RIN 3072-AC40 Information Security Program AGENCY: Federal Maritime Commission... relating to its Information Security Program to reflect the changes implemented by Executive Order 13526--Classified National Security Information--that took effect January 5, 2010, and which prescribes a...

  17. 7 CFR 227.40 - Program information.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 4 2010-01-01 2010-01-01 false Program information. 227.40 Section 227.40 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS NUTRITION EDUCATION AND TRAINING PROGRAM Miscellaneous § 227.40 Program...

  18. 7 CFR 227.40 - Program information.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 4 2013-01-01 2013-01-01 false Program information. 227.40 Section 227.40 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS NUTRITION EDUCATION AND TRAINING PROGRAM Miscellaneous § 227.40 Program...

  19. 7 CFR 227.40 - Program information.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 4 2014-01-01 2014-01-01 false Program information. 227.40 Section 227.40 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS NUTRITION EDUCATION AND TRAINING PROGRAM Miscellaneous § 227.40 Program...

  20. 7 CFR 227.40 - Program information.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 4 2011-01-01 2011-01-01 false Program information. 227.40 Section 227.40 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS NUTRITION EDUCATION AND TRAINING PROGRAM Miscellaneous § 227.40 Program...

  1. 7 CFR 227.40 - Program information.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 4 2012-01-01 2012-01-01 false Program information. 227.40 Section 227.40 Agriculture Regulations of the Department of Agriculture (Continued) FOOD AND NUTRITION SERVICE, DEPARTMENT OF AGRICULTURE CHILD NUTRITION PROGRAMS NUTRITION EDUCATION AND TRAINING PROGRAM Miscellaneous § 227.40 Program...

  2. Program Contacts and Mailing/Courier Information

    EPA Pesticide Factsheets

    This page provides the contact information for the staff at EPA responsible for the different sections of the Review of New Chemicals program, including contacts for PMN Prenotice and Exemptions and the Central Data Exchange program.

  3. A request-oriented information selection program

    NASA Technical Reports Server (NTRS)

    Ryan, E.

    1968-01-01

    General purpose information retrieval program written entirely in FORTRAN 4 was developed and can be used with any file of fixed format documents. This program is easily used by noncomputer personnel and provides flexibility in search requests and output format.

  4. Database versioning and its implementation in geoscience information systems

    NASA Astrophysics Data System (ADS)

    Le, Hai Ha; Schaeben, Helmut; Jasper, Heinrich; Görz, Ines

    2014-09-01

    Many different versions of geoscience data concurrently exist in a database for different geological paradigms, source data, and authors. The aim of this study is to manage these versions in a database management system. Our data include geological surfaces, which are triangulated meshes in this study. Unlike revision/version/source control systems, our data are stored in a central database without local copies. The main contributions of this study include (1) a data model with input/output/manage functions, (2) a mesh comparison function, (3) a version merging strategy, and (4) the implementation of all of the concepts in PostgreSQL and gOcad. The software has been tested using synthetic surfaces and a simple tectonic model of a deformed stratigraphic horizon.

  5. Information Technology Standards Program management plan

    SciTech Connect

    1998-05-01

    This document presents a logical and realistic plan to implement the Information Technology (IT) Standards Program throughout the Department of Energy (DOE). It was developed by DOE Chief Information Officer (CIO) staff, with participation from many other individuals throughout the DOE complex. The DOE IT Standards Program coordinates IT standards activities Department-wide, including implementation of standards to support the DOE Information Architecture. The Program is voluntary, participatory, and consensus-based. The intent is to enable accomplishment of the DOE mission, and the Program is applicable to all DOE elements, both Federal and contractor. The purpose of this document is to describe the key elements of the DOE IT Standards Program.

  6. Integration of the stratigraphic aspects of very large sea-floor databases using information processing

    USGS Publications Warehouse

    Jenkins, Clinton N.; Flocks, J.; Kulp, M.; ,

    2006-01-01

    Information-processing methods are described that integrate the stratigraphic aspects of large and diverse collections of sea-floor sample data. They efficiently convert common types of sea-floor data into database and GIS (geographical information system) tables, visual core logs, stratigraphic fence diagrams and sophisticated stratigraphic statistics. The input data are held in structured documents, essentially written core logs that are particularly efficient to create from raw input datasets. Techniques are described that permit efficient construction of regional databases consisting of hundreds of cores. The sedimentological observations in each core are located by their downhole depths (metres below sea floor - mbsf) and also by a verbal term that describes the sample 'situation' - a special fraction of the sediment or position in the core. The main processing creates a separate output event for each instance of top, bottom and situation, assigning top-base mbsf values from numeric or, where possible, from word-based relative locational information such as 'core catcher' in reference to sampler device, and recovery or penetration length. The processing outputs represent the sub-bottom as a sparse matrix of over 20 sediment properties of interest, such as grain size, porosity and colour. They can be plotted in a range of core-log programs including an in-built facility that better suits the requirements of sea-floor data. Finally, a suite of stratigraphic statistics are computed, including volumetric grades, overburdens, thicknesses and degrees of layering. ?? The Geological Society of London 2006.

  7. [Drug effects informational services: databases for patenting and marketing].

    PubMed

    Shkarenkova, L S; Orlovskaya, T T; Ovchinnikovaq, T V

    1997-01-01

    The review is concerned with databases (DB) for patent and commercial aspects of new drugs marketing. The DB characteristics are given and the search peculiarities in every DB and its possible access are discussed. BD accessible through the STN International are presented.

  8. The health periodicals database: full-text access to consumer and technical health information.

    PubMed

    Lingle, V A

    1990-01-01

    The HEALTH PERIODICALS DATABASE, produced by the Information Access Company, is a unique online file which provides full-text access to both general interest health-related literature and key technical resources in the medical field. Available on DIALOG and CompuServe, the database is described as a useful tool for information on the health, fitness, and nutrition industries. Special features of the database are reviewed and comparisons are made with resources of similar scope.

  9. Heterogeneous databases integration in a hospital information systems environment: a bottom-up approach.

    PubMed Central

    Kamel, M. N.; Zviran, M.

    1991-01-01

    The paper describes the problem of heterogeneous databases, discusses the need for an integrated hospital information system and provides a five-step method for integrating heterogeneous databases in the hospital environment. The scope of this method facilitates the integration of medical, administrative and fiscal information elements of a hospital into a unified environment. PMID:1807623

  10. A Parallel Relational Database Management System Approach to Relevance Feedback in Information Retrieval.

    ERIC Educational Resources Information Center

    Lundquist, Carol; Frieder, Ophir; Holmes, David O.; Grossman, David

    1999-01-01

    Describes a scalable, parallel, relational database-drive information retrieval engine. To support portability across a wide range of execution environments, all algorithms adhere to the SQL-92 standard. By incorporating relevance feedback algorithms, accuracy is enhanced over prior database-driven information retrieval efforts. Presents…

  11. A Multilateral Use and Processing of A Large Bibliographic Database for Research Information

    NASA Astrophysics Data System (ADS)

    Konishi, Osamu; Obayashi, Haruo

    In order to explain the multilateral use of bibliographic database in research activities, nuclear fusion research field as the comprehensive science was selected. The processing method of the above mentioned database is mainly described. Considering advantages of the bibliographic and indexed information of such database, its use is classified into three types: 1. To use for reference information, 2. To obtain facts and knowledge from information, and 3. To process and analyse information. Each sample corresponding to the above is introduced as follows, and the usefulness of a large scale database is made clear. 1) Use of online search in research activities, 2) Construction of scientific terms list utilizing keywords and their frequency in the database, and 3) To analyse bibliographic information metrically and evaluate research. This is an application of scientometrics.

  12. Unified Planetary Coordinates System: A Searchable Database of Geodetic Information

    NASA Technical Reports Server (NTRS)

    Becker, K. J.a; Gaddis, L. R.; Soderblom, L. A.; Kirk, R. L.; Archinal, B. A.; Johnson, J. R.; Anderson, J. A.; Bowman-Cisneros, E.; LaVoie, S.; McAuley, M.

    2005-01-01

    Over the past 40 years, an enormous quantity of orbital remote sensing data has been collected for Mars from many missions and instruments. Unfortunately these datasets currently exist in a wide range of disparate coordinate systems, making it extremely difficult for the scientific community to easily correlate, combine, and compare data from different Mars missions and instruments. As part of our work for the PDS Imaging Node and on behalf of the USGS Astrogeology Team, we are working to solve this problem and to provide the NASA scientific research community with easy access to Mars orbital data in a unified, consistent coordinate system along with a wide variety of other key geometric variables. The Unified Planetary Coordinates (UPC) system is comprised of two main elements: (1) a database containing Mars orbital remote sensing data computed using a uniform coordinate system, and (2) a process by which continual maintainance and updates to the contents of the database are performed.

  13. Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses

    PubMed Central

    Sekar, Kanagaraj

    2016-01-01

    Ebola Virus Disease (EVD) is a life-threatening haemorrhagic fever in humans. Even though there are many reports on EVD, the protein precursor functions and virulent factors of ebolaviruses remain poorly understood. Comparative analyses of Ebolavirus genomes will help in the identification of these important features. This prompted us to develop the Ebolavirus Database (EDB) and we have provided links to various tools that will aid researchers to locate important regions in both the genomes and proteomes of Ebolavirus. The genomic analyses of ebolaviruses will provide important clues for locating the essential and core functional genes. The aim of EDB is to act as an integrated resource for ebolaviruses and we strongly believe that the database will be a useful tool for clinicians, microbiologists, health care workers, and bioscience researchers. PMID:27190508

  14. Environmental Programs Information: Affecting Kansas Public Schools

    ERIC Educational Resources Information Center

    Kansas State Department of Education, 2004

    2004-01-01

    This document provides a brief overview of the environmental issues that affect Kansas public schools. Specific programs that address these problems are included, along with their contact information. This document contains information on the following issues and programs: (1) Department of Health and Environment; (2) air; (3) asbestos; (4)…

  15. 32 CFR 542.7 - Program information.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 3 2014-07-01 2014-07-01 false Program information. 542.7 Section 542.7 National Defense Department of Defense (Continued) DEPARTMENT OF THE ARMY MILITARY EDUCATION SCHOOLS AND COLLEGES § 542.7 Program information. (a) The JROTC/NDCC is organized into units at public and private...

  16. 32 CFR 562.7 - Program information.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 3 2014-07-01 2014-07-01 false Program information. 562.7 Section 562.7 National Defense Department of Defense (Continued) DEPARTMENT OF THE ARMY ORGANIZED RESERVES RESERVE OFFICERS' TRAINING CORPS § 562.7 Program information. (a) The Senior ROTC is conducted at military colleges...

  17. Information hiding in parallel programs

    SciTech Connect

    Foster, I.

    1992-01-30

    A fundamental principle in program design is to isolate difficult or changeable design decisions. Application of this principle to parallel programs requires identification of decisions that are difficult or subject to change, and the development of techniques for hiding these decisions. We experiment with three complex applications, and identify mapping, communication, and scheduling as areas in which decisions are particularly problematic. We develop computational abstractions that hide such decisions, and show that these abstractions can be used to develop elegant solutions to programming problems. In particular, they allow us to encode common structures, such as transforms, reductions, and meshes, as software cells and templates that can reused in different applications. An important characteristic of these structures is that they do not incorporate mapping, communication, or scheduling decisions: these aspects of the design are specified separately, when composing existing structures to form applications. This separation of concerns allows the same cells and templates to be reused in different contexts.

  18. Chapter 1 Information Management Program. User's Guide.

    ERIC Educational Resources Information Center

    RMC Research Corp., Denver, CO.

    The first of seven chapters in this guide for users of the Chapter 1 Information Management Program (CHIMP) provides an introduction to the program, which was designed to help school districts maintain data and produce reports used in the evaluation of Chapter 1 programs. It is noted that these reports are useful for meeting state and federal…

  19. 78 FR 54862 - Information Collection; General Program Administration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-06

    ... Farm Service Agency Information Collection; General Program Administration AGENCY: Farm Service Agency... Programs (FLP) General Program Administration. The information collected is used to ensure that applicants... INFORMATION: ] Title: Farm Loan Programs, General Program Administration. OMB Control Number:...

  20. University Program Management Information System

    NASA Technical Reports Server (NTRS)

    Gans, Gary (Technical Monitor)

    2002-01-01

    As basic policy, NASA believes that colleges and universities should be encouraged to participate in the nation's space and aeronautics program to the maximum extent practicable. Indeed, universities are considered as partners with government and industry in the nation's aerospace program. NASA's objective is to have them bring their scientific, engineering, and social research competence to bear on aerospace problems and on the broader social, economic, and international implications of NASA's technical and scientific programs. It is expected that, in so doing, universities will strengthen both their research and their educational capabilities to contribute more effectively to the national well-being. This annual report is one means of documenting the NASA-university relationship, frequently denoted, collectively, as NASA's University Program. This report is consistent with agency accounting records, as the data is obtained from NASA's Financial and Contractual Status (FACS) System, operated by the Financial Management Division and the Procurement Office. However, in accordance with interagency agreements, the orientation differs from that required for financial or procurement purposes. Any apparent discrepancies between this report and other NASA procurement or financial reports stem from the selection criteria for the data. This report was prepared by the Education Division/FE, Office of Human Resources and Education.

  1. University Program Management Information System

    NASA Technical Reports Server (NTRS)

    Gans, Gary (Technical Monitor)

    2004-01-01

    As basic policy, NASA believes that colleges and universities should be encouraged to participate in the nation's space and aeronautics program to the maximum extent practicable. Indeed, universities are considered as partners with government and industry in the nation's aerospace program. NASA's objective is to have them bring their scientific, engineering, and social research competence to bear on aerospace problems and on the broader social, economic, and international implications of NASA's technical and scientific programs. It is expected that, in so doing, universities will strengthen both their research and their educational capabilities to contribute more effectively to the national well being. This annual report is one means of documenting the NASA-university relationship, frequently denoted, collectively, as NASA's University Program. This report is consistent with agency accounting records, as the data is obtained from NASA's Financial and Contractual Status (FACS) System, operated by the Financial Management Division and the Procurement Office. However, in accordance with interagency agreements, the orientation differs from that required for financial or procurement purposes. Any apparent discrepancies between this report and other NASA procurement or financial reports stem from the selection criteria for the data.

  2. University Program Management Information System

    NASA Technical Reports Server (NTRS)

    2001-01-01

    As basic policy, NASA believes that colleges and universities should be encouraged to participate in the nation's space and aeronautics program to the maximum extent practicable. Indeed, universities are considered as partners with government and industry in the nation's aerospace program. NASA' objective is to have them bring their scientific, engineering, and social research competence to bear on aerospace problems and on the broader social, economic, and international implications of NASA's technical and scientific programs. It is expected that, in so doing, universities will strengthen both their research and their educational capabilities to contribute more effectively to the national well being. This annual report is one means of documenting the NASA-university relationship, frequently denoted, collectively, as NASA's University Program. This report is consistent with agency accounting records, as the data is obtained from NASA's Financial and Contractual Status (FACS) System, operated by the Financial Management Division and the Procurement Office. However, in accordance with interagency agreements, the orientation differs from that required for financial or procurement purposes. Any apparent discrepancies between this report and other NASA procurement or financial reports stem from the selection criteria for the data.

  3. Water Information Programs in Kansas

    USGS Publications Warehouse

    Aucott, Walter

    2010-01-01

    The USGS has collected hydrologic information in Kansas for more than 100 years. This information consists of streamflow and gage-height data; reservoir content; water-quality and water-quantity data; suspended-sediment data; and groundwater levels. Hydrologic studies are conducted on statewide, regional, and local levels. The USGS in Kansas works cooperatively with 31 Federal, State, and local agencies, such as the Kansas Water Office, the U.S. Army Corps of Engineers, and the City of Wichita.

  4. A database-informed approach to new plant shielding design

    SciTech Connect

    Lloyd, T. M.

    2011-07-01

    Document available in abstract form only, full text of document follows: To facilitate the definition and description of radiation dose rates in the numerous rooms and areas of a new nuclear power plant, a database approach was developed. This approach offers a number of benefits over more manual methods. A key benefit is that the selection of an appropriate shielding method to use in each area of the plant is greatly facilitated by virtue of the team's improved ability to grasp the significance of each of the individual sources that are candidates for making a significant contribution to the dose rate in each area. By understanding the level of relevant contribution - if any - of each of these candidate sources, an analyst is able to select a method that will define the contribution without becoming enmired in a model representing inappropriately high degrees of accuracy and modeling time. This database method, by allowing for an evolving understanding of dose rates and sources in the neighboring rooms for each portion of the plant, leads to substantial reductions in the effort of characterizing a plant's radiation environment. As an additional benefit, the database serves as a tool for documenting the shielding calculations themselves, automatically generating formatted sections including drawing and source term references, shielding calculation types, key dimensions, and results; these sections can form the starting point of a full calculation package. The approach offers a final project management benefit: estimating, tracking, and predicting the effort associated with the many calculations involved in such a project are greatly systematized, leading to more reliable manpower estimates. (authors)

  5. Field validation of food service listings: a comparison of commercial and online geographic information system databases.

    PubMed

    Seliske, Laura; Pickett, William; Bates, Rebecca; Janssen, Ian

    2012-08-01

    Many studies examining the food retail environment rely on geographic information system (GIS) databases for location information. The purpose of this study was to validate information provided by two GIS databases, comparing the positional accuracy of food service places within a 1 km circular buffer surrounding 34 schools in Ontario, Canada. A commercial database (InfoCanada) and an online database (Yellow Pages) provided the addresses of food service places. Actual locations were measured using a global positioning system (GPS) device. The InfoCanada and Yellow Pages GIS databases provided the locations for 973 and 675 food service places, respectively. Overall, 749 (77.1%) and 595 (88.2%) of these were located in the field. The online database had a higher proportion of food service places found in the field. The GIS locations of 25% of the food service places were located within approximately 15 m of their actual location, 50% were within 25 m, and 75% were within 50 m. This validation study provided a detailed assessment of errors in the measurement of the location of food service places in the two databases. The location information was more accurate for the online database, however, when matching criteria were more conservative, there were no observed differences in error between the databases.

  6. Improving Installation Level Classified Information Protection Programs.

    DTIC Science & Technology

    1987-04-01

    1987 Api ni 16. SUPPLEMENTARY NOTATION ITEM 11: CLASSIFIED INFORMATION PROTECTION-PROGRAMS 17. COSATI CODES 18. SUBJECT TERMS ( Continue on rwuerse if...nectmary and identify by block number) S FIELD GROUP SUB. GR. % 19. ABSTRACT ( Continue on reverse if necessary and identify by block numbero Recent DoD...USAF installation level classified information protection programs. II. BACKGROUND. Recent unauthorized disclosures of classified information to the

  7. Reliability database development for use with an object-oriented fault tree evaluation program

    NASA Technical Reports Server (NTRS)

    Heger, A. Sharif; Harringtton, Robert J.; Koen, Billy V.; Patterson-Hine, F. Ann

    1989-01-01

    A description is given of the development of a fault-tree analysis method using object-oriented programming. In addition, the authors discuss the programs that have been developed or are under development to connect a fault-tree analysis routine to a reliability database. To assess the performance of the routines, a relational database simulating one of the nuclear power industry databases has been constructed. For a realistic assessment of the results of this project, the use of one of existing nuclear power reliability databases is planned.

  8. Navy Manufacturing Information Innovation Program

    DTIC Science & Technology

    2006-02-10

    opportunities, for a fee. Navy TechMatch is a "free" service to industry; government benefits from the fact that more people are exposed to doing business with...by anyone for relevant information. The real benefit of Navy TechMatch is becoming a registered user. At no cost, registered users can receive email...the benefits of Navy TechMatch but contain all the information from the Army TechMatch and Air Force TechMatch systems, which are currently under

  9. U.S. Air Force Scientific and Technical Information Program - The STINFO Program

    NASA Technical Reports Server (NTRS)

    Blados, Walter R.

    1991-01-01

    The U.S. Air Force STINFO (Scientific and Technical Information) program has as its main goal the proper use of all available scientific and technical information in the development of programs. The organization of STINFO databases, the use of STINFO in the development and advancement of aerospace science and technology and the acquisition of superior systems at lowest cost, and the application to public and private sectors of technologies developed for military uses are examined. STINFO user training is addressed. A project for aerospace knowledge diffusion is discussed.

  10. U.S. Air Force Scientific and Technical Information Program - The STINFO Program

    NASA Technical Reports Server (NTRS)

    Blados, Walter R.

    1991-01-01

    The U.S. Air Force STINFO (Scientific and Technical Information) program has as its main goal the proper use of all available scientific and technical information in the development of programs. The organization of STINFO databases, the use of STINFO in the development and advancement of aerospace science and technology and the acquisition of superior systems at lowest cost, and the application to public and private sectors of technologies developed for military uses are examined. STINFO user training is addressed. A project for aerospace knowledge diffusion is discussed.

  11. Policy Information System Computer Program.

    ERIC Educational Resources Information Center

    Hamlin, Roger E.; And Others

    The concepts and methodologies outlined in "A Policy Information System for Vocational Education" are presented in a simple computer format in this booklet. It also contains a sample output representing 5-year projections of various planning needs for vocational education. Computerized figures in the eight areas corresponding to those in the…

  12. Policy Information System Computer Program.

    ERIC Educational Resources Information Center

    Hamlin, Roger E.; And Others

    The concepts and methodologies outlined in "A Policy Information System for Vocational Education" are presented in a simple computer format in this booklet. It also contains a sample output representing 5-year projections of various planning needs for vocational education. Computerized figures in the eight areas corresponding to those in the…

  13. Issues in the design of a clinical microbiology database within an integrated hospital information system.

    PubMed Central

    Nussbaum, B. E.

    1991-01-01

    The LASTWORD hospital information system contains a clinical microbiology database which permits both review of patient reports and retrospective data searches using clinical and/or demographic criteria. The elements supporting this database are dictionary tables of coded phrases, a general purpose query language (Tandem ENFORM), an HL7 interface to a laboratory computer system, and long-term data storage of demographic, microbiology and other clinical data in a relational database. PMID:1807616

  14. Evaluation of nursing-specific drug information PDA databases used as clinical decision support tools.

    PubMed

    Polen, Hyla H; Clauson, Kevin A; Thomson, Wendy; Zapantis, Antonia; Lou, Jennie Q

    2009-10-01

    Nursing is arguably the most organizationally diverse healthcare profession. Educational backgrounds may vary, even among similarly credentialed nurses. Drug information databases used as clinical decision support tools can improve access to pharmacologic information at point-of-care when housed on personal digital assistants. They may also help address the disparity in drug information and pharmacology education between nurses. To evaluate nursing-specific drug information database content on personal digital assistants (PDAs). Seven nursing-specific PDA databases were evaluated for scope (absence or presence of an answer) and completeness (three-point scale) via the use of 80 general category and 80 subspecialty drug information questions. Erroneous information was also tracked. Individual scope and completeness scores were delineated by rank order and chi square was performed to determine differences in scope and completeness scores between the databases. Davis's Drug Guide for Nurses (DDGN) and Nursing Lexi-Drugs (NLD) tied for the highest scores for scope, including each answering 72.5% of the 160 evaluation questions. No significant differences existed between their scores and those earned by Nursing2008 Drug Handbook (p<0.05). The highest scores for completeness were earned by NLD with 58.1% and DDGN at 57.1%. Saunders Nursing Drug Handbook was the only database that showed a significantly lower score in completeness as compared to the other six databases (p<0.05). A 4.2% overall error rate was found among database answers. Significant differences were found among the performances in the databases evaluated in this study for their ability to answer commonly encountered drug information issues in nursing practice. All databases contained some erroneous information and even the top performers failed to provide answers to more than one-fourth of the questions posed. The availability of accurate and timely drug information at point-of-care can play a vital role

  15. Adjustments for Unmeasured Confounders in Pharmacoepidemiologic Database Studies Using External Information

    PubMed Central

    Stürmer, Til; Glynn, Robert J; Rothman, Kenneth J; Avorn, Jerry; Schneeweiss, Sebastian

    2008-01-01

    Background Non-experimental studies of drug effects in large automated databases can provide timely assessment of real-life drug use, but are prone to confounding by variables that are not contained in these databases and thus cannot be controlled. Objectives To describe how information on additional confounders from validation studies can help address the problem of unmeasured confounding in the main study. Research Design Review types of validation studies that allow adjustment for unmeasured confounding and illustrate these with an example. Subjects: Main study New Jersey residents 65 years or older hospitalized between 1995 and 1997, who filled prescriptions within Medicaid or a pharmaceutical assistance program. Validation study: representative sample of Medicare beneficiaries. Measures Association between nonsteroidal anti-inflammatory drugs (NSAIDs) and mortality. Results Validation studies are categorized as internal (ie, additional information is collected on participants of the main study) or external. Availability of information on disease outcome will affect choice of analytic strategies. Using an external validation study without data on disease outcome to adjust for unmeasured confounding, propensity score calibration (PSC) leads to a plausible estimate of the association between NSAIDs and mortality in the elderly, if the biases caused by measured and unmeasured confounders go in the same direction. Conclusions Estimates of drug effects can be adjusted for confounders that are not available in the main but can be measured in a validation study. PSC uses validation data without information on disease outcome under a strong assumption. The collection and integration of validation data in pharmacoepidemiology should be encouraged. PMID:17909375

  16. PHASS99: A software program for retrieving and decoding the radiometric ages of igneous rocks from the international database IGBADAT

    NASA Astrophysics Data System (ADS)

    Al-Mishwat, Ali T.

    2016-05-01

    PHASS99 is a FORTRAN program designed to retrieve and decode radiometric and other physical age information of igneous rocks contained in the international database IGBADAT (Igneous Base Data File). In the database, ages are stored in a proprietary format using mnemonic representations. The program can handle up to 99 ages in an igneous rock specimen and caters to forty radiometric age systems. The radiometric age alphanumeric strings assigned to each specimen description in the database consist of four components: the numeric age and its exponential modifier, a four-character mnemonic method identification, a two-character mnemonic name of analysed material, and the reference number in the rock group bibliography vector. For each specimen, the program searches for radiometric age strings, extracts them, parses them, decodes the different age components, and converts them to high-level English equivalents. IGBADAT and similarly-structured files are used for input. The output includes three files: a flat raw ASCII text file containing retrieved radiometric age information, a generic spreadsheet-compatible file for data import to spreadsheets, and an error file. PHASS99 builds on the old program TSTPHA (Test Physical Age) decoder program and expands greatly its capabilities. PHASS99 is simple, user friendly, fast, efficient, and does not require users to have knowledge of programing.

  17. The Air Program Information Management System (APIMS)

    DTIC Science & Technology

    2011-11-02

    Technology November 2, 2011 The Air Program Information Management System (APIMS) Frank Castaneda, III, P.E. APIMS Program Manager AFCEE/TDNQ APIMS...NOV 2011 2. REPORT TYPE 3. DATES COVERED 00-00-2011 to 00-00-2011 4. TITLE AND SUBTITLE The Air Program Information Management System (APIMS... Information   Management   System : Sustainability of  Enterprise air quality management system • Aspects and Impacts to Process • Auditing and Measurement

  18. An Online Database for Informing Ecological Network Models: http://kelpforest.ucsc.edu

    PubMed Central

    Beas-Luna, Rodrigo; Novak, Mark; Carr, Mark H.; Tinker, Martin T.; Black, August; Caselle, Jennifer E.; Hoban, Michael; Malone, Dan; Iles, Alison

    2014-01-01

    Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/databaseui). PMID:25343723

  19. An online database for informing ecological network models: http://kelpforest.ucsc.edu.

    PubMed

    Beas-Luna, Rodrigo; Novak, Mark; Carr, Mark H; Tinker, Martin T; Black, August; Caselle, Jennifer E; Hoban, Michael; Malone, Dan; Iles, Alison

    2014-01-01

    Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/databaseui).

  20. An online database for informing ecological network models: http://kelpforest.ucsc.edu

    USGS Publications Warehouse

    Beas-Luna, Rodrigo; Tinker, M. Tim; Novak, Mark; Carr, Mark H.; Black, August; Caselle, Jennifer E.; Hoban, Michael; Malone, Dan; Iles, Alison C.

    2014-01-01

    Ecological network models and analyses are recognized as valuable tools for understanding the dynamics and resiliency of ecosystems, and for informing ecosystem-based approaches to management. However, few databases exist that can provide the life history, demographic and species interaction information necessary to parameterize ecological network models. Faced with the difficulty of synthesizing the information required to construct models for kelp forest ecosystems along the West Coast of North America, we developed an online database (http://kelpforest.ucsc.edu/) to facilitate the collation and dissemination of such information. Many of the database's attributes are novel yet the structure is applicable and adaptable to other ecosystem modeling efforts. Information for each taxonomic unit includes stage-specific life history, demography, and body-size allometries. Species interactions include trophic, competitive, facilitative, and parasitic forms. Each data entry is temporally and spatially explicit. The online data entry interface allows researchers anywhere to contribute and access information. Quality control is facilitated by attributing each entry to unique contributor identities and source citations. The database has proven useful as an archive of species and ecosystem-specific information in the development of several ecological network models, for informing management actions, and for education purposes (e.g., undergraduate and graduate training). To facilitate adaptation of the database by other researches for other ecosystems, the code and technical details on how to customize this database and apply it to other ecosystems are freely available and located at the following link (https://github.com/kelpforest-cameo/data​baseui).

  1. 76 FR 54807 - Notice of Proposed Information Collection: IMLS Museum Web Database: MuseumsCount.gov

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-02

    ... ARTS AND THE HUMANITIES Notice of Proposed Information Collection: IMLS Museum Web Database: Museums..., address, phone, e-mail, Web site, congressional district, and geographic location would be collected. The... of Museum and Library Services. Title: IMLS Museum Web Database, MuseumsCount.gov . OMB Number: To be...

  2. National Databases with Information on College Students with Disabilities. NCCSD Research Brief. Volume 1, Issue 1

    ERIC Educational Resources Information Center

    Avellone, Lauren; Scott, Sally

    2017-01-01

    The purpose of this research brief was to identify and provide an overview of national databases containing information about college students with disabilities. Eleven instruments from federal and university-based sources were described. Databases reflect a variety of survey methods, respondents, definitions of disability, and research questions.…

  3. A System for the Automatic Retrieval of Information from a Specialist Database.

    ERIC Educational Resources Information Center

    Aldous, K. J.

    1996-01-01

    Discusses a method for organizing and augmenting the data in a complex database to make automatic retrieval possible. Presents an example of the method using a database of information on the nature and use of fungicides. Initial results of trials with potential users suggest that the system can produce relevant responses to queries. (Author/AEF)

  4. Developing a Large Lexical Database for Information Retrieval, Parsing, and Text Generation Systems.

    ERIC Educational Resources Information Center

    Conlon, Sumali Pin-Ngern; And Others

    1993-01-01

    Important characteristics of lexical databases and their applications in information retrieval and natural language processing are explained. An ongoing project using various machine-readable sources to build a lexical database is described, and detailed designs of individual entries with examples are included. (Contains 66 references.) (EAM)

  5. Accessibility and Availability of Online Information for Orthopedic Surgery Residency Programs

    PubMed Central

    Davidson, Austin R.; Loftis, Christopher M.; Throckmorton, Thomas W.

    2016-01-01

    Abstract Background Prospective orthopedic residency applicants commonly use one of three databases to identify potential programs: Accreditation Council of Graduate Medical Education (ACGME), American Medical Association (FREIDA), or Orthogate. org. In addition, institutional websites are typically the primary source of information once programs are identified. We sought to evaluate the databases and websites used by prospective orthopedic surgery applicants for content and accessibility. We hypothesized that information would be more available in comparison to previous studies but would still fail to provide complete, up to date program information for the prospective applicant. Methods Three online databases were queried in December 2014 to compile a list of orthopedic residency programs in the United States. This combined list was used as a basis for evaluating individual institution websites. Previously described criteria were used to evaluate the availability of information contained within orthopedic surgery residency websites. Results At the time of online review, 157 programs were identified. Depending on the database in question, up to 33% of programs either did not provide a link or listed a non-functioning link. Among the variety of evaluated criteria, inclusion of the information varied between 12% and 97% for the individual program websites. Conclusions Online databases are useful in listing programs, but individual program details and direct functional links are lacking. Most program websites contain varying degrees of desired information; however, not all programs maintain websites which consistently provide information to satisfy the evaluated criteria in this study. Improved online accessibility and availability of information for residency programs would increase their visibility and utility for prospective applicants. PMID:27528832

  6. Accessibility and Availability of Online Information for Orthopedic Surgery Residency Programs.

    PubMed

    Davidson, Austin R; Loftis, Christopher M; Throckmorton, Thomas W; Kelly, Derek M

    2016-01-01

    Prospective orthopedic residency applicants commonly use one of three databases to identify potential programs: Accreditation Council of Graduate Medical Education (ACGME), American Medical Association (FREIDA), or Orthogate. org. In addition, institutional websites are typically the primary source of information once programs are identified. We sought to evaluate the databases and websites used by prospective orthopedic surgery applicants for content and accessibility. We hypothesized that information would be more available in comparison to previous studies but would still fail to provide complete, up to date program information for the prospective applicant. Three online databases were queried in December 2014 to compile a list of orthopedic residency programs in the United States. This combined list was used as a basis for evaluating individual institution websites. Previously described criteria were used to evaluate the availability of information contained within orthopedic surgery residency websites. At the time of online review, 157 programs were identified. Depending on the database in question, up to 33% of programs either did not provide a link or listed a non-functioning link. Among the variety of evaluated criteria, inclusion of the information varied between 12% and 97% for the individual program websites. Online databases are useful in listing programs, but individual program details and direct functional links are lacking. Most program websites contain varying degrees of desired information; however, not all programs maintain websites which consistently provide information to satisfy the evaluated criteria in this study. Improved online accessibility and availability of information for residency programs would increase their visibility and utility for prospective applicants.

  7. Information analysis of a spatial database for ecological land classification

    NASA Technical Reports Server (NTRS)

    Davis, Frank W.; Dozier, Jeff

    1990-01-01

    An ecological land classification was developed for a complex region in southern California using geographic information system techniques of map overlay and contingency table analysis. Land classes were identified by mutual information analysis of vegetation pattern in relation to other mapped environmental variables. The analysis was weakened by map errors, especially errors in the digital elevation data. Nevertheless, the resulting land classification was ecologically reasonable and performed well when tested with higher quality data from the region.

  8. Information analysis of a spatial database for ecological land classification

    NASA Technical Reports Server (NTRS)

    Davis, Frank W.; Dozier, Jeff

    1990-01-01

    An ecological land classification was developed for a complex region in southern California using geographic information system techniques of map overlay and contingency table analysis. Land classes were identified by mutual information analysis of vegetation pattern in relation to other mapped environmental variables. The analysis was weakened by map errors, especially errors in the digital elevation data. Nevertheless, the resulting land classification was ecologically reasonable and performed well when tested with higher quality data from the region.

  9. Comparison of bibliographic databases for information on the rehabilitation of people with severe mental illness*

    PubMed Central

    Brettle, Alison J.; Long, Andrew F.

    2001-01-01

    Objective: The research sought to examine the overlap in coverage between several health-related databases, thus enabling the identification of the most important sources for searching for information on the rehabilitation of people with severe mental illness. Methods: The literature was searched within a systematic review. Several health-related databases were retrieved (Cumulative Index to Nursing and Allied Health Literature, The Cochrane Library, MEDLINE, PsycLIT, Sociofile, and Social Science Citation Index), noting their source and comparing results retrieved from each database. Findings: The total number of studies retrieved from each database varied. Almost a third of the papers retrieved from each database were unique to that source. Forty-two percent of the papers were only found in one database. Restricting a search to one database alone would miss many papers and could affect the results of a systematic review. PsycLIT was the most useful database for this topic area, containing 44% of the papers. MEDLINE, the database of first choice for many health professionals, held only 29%. Conclusions: No database was determined to be significantly more useful than any other—each warranted inclusion in the study. Reliance cannot be placed on one database alone, and other methods such as hand searching should also be used. Although this may not be new information for information professionals, it is likely to be new for health professionals and researchers who are increasingly performing their own literature searches. Information professionals have an important role to play in conveying this message to those outside their profession. PMID:11837257

  10. Databases and Clearinghouses: Information Resources for Education. Information Series No. 167.

    ERIC Educational Resources Information Center

    Feaster, Thelma J.; And Others

    Databases and clearinghouses useful in education are described in this publication. Section one, "Databases," contains one-page summaries of 54 databases of interest to educators, covering a variety of subjects, such as energy and environmental education, psychology, funding sources, language, special education, art, child abuse and neglect, and…

  11. Applied Information Systems Research Program Workshop

    NASA Technical Reports Server (NTRS)

    1991-01-01

    The first Applied Information Systems Research Program (AISRP) Workshop provided the impetus for several groups involved in information systems to review current activities. The objectives of the workshop included: (1) to provide an open forum for interaction and discussion of information systems; (2) to promote understanding by initiating a dialogue with the intended benefactors of the program, the scientific user community, and discuss options for improving their support; (3) create an advocacy in having science users and investigators of the program meet together and establish the basis for direction and growth; and (4) support the future of the program by building collaborations and interaction to encourage an investigator working group approach for conducting the program.

  12. Intelligent Information Retrieval for a Multimedia Database Using Captions

    DTIC Science & Technology

    1992-07-23

    can be moved to optical storage (presently a 10-platter magneto optical jukebox) when needed. The reason to move it to optical storage is that the...aircraft’ program, noun-1, , noun-1, ’A-7’, noun-1, noun-1, ’A-7’, noun-1, [ noun-1, ’A-7’, noun-1, [ ’AAR-47’, noun-1, ’ electro- optica ’AC-130

  13. Database Program To Manage Slides and Images for Teaching and Presentations.

    ERIC Educational Resources Information Center

    Byers, John A.

    1999-01-01

    Describes a computer program that manages a collection of pictures such as photographic slides, overheads, or computer images in one or more databases. Discusses organizing the database, searching, and keeping track of the time needed to present the images. (Author/LRW)

  14. Internet programs for drawing moth pheromone analogs and searching literature database.

    PubMed

    Byers, John A

    2002-04-01

    An Internet web page is described for organizing and analyzing information about lepidopteran sex pheromone components. Hypertext markup language (HTML) with JavaScript program code is used to draw moth pheromone analogs by combining GIF bitmap images for viewing by web browsers such as Netscape or Microsoft Intemet Explorer. Straight-chain hydrocarbons of 5-22 carbons with epoxides or unsaturated positions of E or Z geometrical configuration with several altemative functional groups can be drawn by simply checking menu bars or checkboxes representing chain length, E/Z unsaturation points, epoxide position and chirality, and optional functional groups. The functional group can be an aldehyde, alcohol, or ester of formate, acetate, propionate, or butyrate. The program is capable of drawing several million structures and naming them [e.g., (E,E)-8,10-dodecadien-1-ol and abbreviated as E8E10-12:OH]. A Java applet program run from the same page searches forthe presently drawn structure in an intemal database compiled from the Pherolist, and if the component is found, provides a textarea display of the families and species using the component. Links are automatically specified for drawn components if found in the Pherolist web site (maintained by H. Am). Windowed links can also be made to two other JavaScript programs that allow searches of a web site database with over 5900 research citations on lepidopteran semiochemicals and a calculator of vapor pressures of some moth sex pheromone analogs at a specified temperature. Various evolutionary and biosynthetic aspects are discussed in regard to the diversity of moth sex pheromone components.

  15. A high-quality fuels database of photos and information

    Treesearch

    Clinton S. Wright; Paige C. Eagle; Diana L. Olson

    2010-01-01

    Photo series and their associated data provide a quick and easy way for managers to quantify and describe fuel and vegetation properties, such as loading of dead and down woody material, tree density, or height of understory vegetation. This information is critical for making fuel management decisions and for predicting fire behavior and fire effects. The Digital Photo...

  16. Development of an EMF Measurments Database, EMF Rapid Program, Project #5, Interim Report: April 1995-December 1996

    SciTech Connect

    T. Dan Bracken, Inc.

    1998-03-01

    The EMF Measurements Database project is being implemented by T. Dan Bracken, Inc. as part of the EMF Research and Public Information Dissemination (EMF RAPID) Program. The Database is a collection of data sets that relate to measurement of electric and/or magnetic fields. This report describes activities during the period January 1997 to March 1998. Primary goals for the EMF Measurements Database are to develop a database structure that can accommodate the diversity of EMF data sets, provide guidance for production of future EMF data sets, and serve as an accessible repository of EMF measurement data. Specific objectives of the EMF Measurements Database are: o to presewe study descriptions, results and data; o to provide readily accessible, well-documented data; and - o to facilitate communication among researchers. In addition, the EMF Measurements Database will encourage additional analysis of existing data sets, facilitate analysis of data from multiple projects, support design of new studies, and permit future issues in EMF exposure assessment to be addressed with existing data. Preservation of study descriptions and data is accomplished with a formal, but open, structure. Specifications have been developed for the various elements of the database. Each data set in the database is formally described by a metadata file. The structured metadata file describes the origin, development, logical and physical structure, and distribution mechanism for each data set. The metadata for each data set is generated according to a specification developed for the EMF Measurements Database. The actual measurement data is contained in data products for each data set. The number and type of data product will vary by data set. Most of the data products available from the EMF Measurements Database can be downloaded from an Internet site. For some data sets, the data products will be maintained by other patties who may have their own access procedures.

  17. Intelligent Access to Sequence and Structure Databases (IASSD) − an interface for accessing information from major web databases

    PubMed Central

    Ganguli, Sayak; Gupta, Manoj Kumar; Basu, Protip; Banik, Rahul; Singh, Pankaj Kumar; Vishal, Vineet; Bera, Abhisek Ranjan; Chakraborty, Hirak Jyoti; Das, Sasti Gopal

    2014-01-01

    With the advent of age of big data and advances in high throughput technology accessing data has become one of the most important step in the entire knowledge discovery process. Most users are not able to decipher the query result that is obtained when non specific keywords or a combination of keywords are used. Intelligent access to sequence and structure databases (IASSD) is a desktop application for windows operating system. It is written in Java and utilizes the web service description language (wsdl) files and Jar files of E-utilities of various databases such as National Centre for Biotechnology Information (NCBI) and Protein Data Bank (PDB). Apart from that IASSD allows the user to view protein structure using a JMOL application which supports conditional editing. Availability The Jar file is freely available through e-mail from the corresponding author. PMID:25670880

  18. Selected Federal and State Book Program Information.

    ERIC Educational Resources Information Center

    Millenson, Roy H., Comp.

    This publication presents information on federal and state programs which fund library and other book-related projects. Federal programs described provide funding for: (1) library services (Title I, Library Services and Construction Act/LSCA); (2) instructional materials and school library resources (Title IV-B, Elementary and Secondary Education…

  19. Efficiency of 22 online databases in the search for physicochemical, toxicological and ecotoxicological information on chemicals.

    PubMed

    Guerbet, Michel; Guyodo, Gaetan

    2002-03-01

    The objective of this study was to evaluate the efficiency of 22 free online databases that could be used for an exhaustive search of physicochemical, toxicological and/or ecotoxicological information about various chemicals. Twenty-two databases with free access on the Internet were referenced. We then selected 27 major physicochemical, toxicological and ecotoxicological criteria and 14 compounds belonging to seven different chemical classes which were used to interrogate all the databases. Two indices were successively calculated to evaluate the efficiency with taking or not taking account of their specialization. More than 50% of the 22 databases 'knew' all of the 14 chemicals, but the quantity of information provided is very different from one to the other and most are poorly documented. Two categories clearly appear with specialized and non-specialized databases. The HSDB database is the most efficient general database to be searched first, because it is well documented for most of the 27 criteria. However, some specialized databases (i.e. EXTOXNET, SOLVEDB, etc.) must be searched secondarily to find additional information.

  20. NIASGBdb: NIAS Genebank databases for genetic resources and plant disease information.

    PubMed

    Takeya, Masaru; Yamasaki, Fukuhiro; Uzuhashi, Shihomi; Aoki, Takayuki; Sawada, Hiroyuki; Nagai, Toshirou; Tomioka, Keisuke; Tomooka, Norihiko; Sato, Toyozo; Kawase, Makoto

    2011-01-01

    The National Institute of Agrobiological Sciences (NIAS) is implementing the NIAS Genebank Project for conservation and promotion of agrobiological genetic resources to contribute to the development and utilization of agriculture and agricultural products. The project's databases (NIASGBdb; http://www.gene.affrc.go.jp/databases_en.php) consist of a genetic resource database and a plant diseases database, linked by a web retrieval database. The genetic resources database has plant and microorganism search systems to provide information on research materials, including passport and evaluation data for genetic resources with the desired properties. To facilitate genetic diversity research, several NIAS Core Collections have been developed. The NIAS Rice (Oryza sativa) Core Collection of Japanese Landraces contains information on simple sequence repeat (SSR) polymorphisms. SSR marker information for azuki bean (Vigna angularis) and black gram (V. mungo) and DNA sequence data from some selected Japanese strains of the genus Fusarium are also available. A database of plant diseases in Japan has been developed based on the listing of common names of plant diseases compiled by the Phytopathological Society of Japan. Relevant plant and microorganism genetic resources are associated with the plant disease names by the web retrieval database and can be obtained from the NIAS Genebank for research or educational purposes.

  1. NIASGBdb: NIAS Genebank databases for genetic resources and plant disease information

    PubMed Central

    Takeya, Masaru; Yamasaki, Fukuhiro; Uzuhashi, Shihomi; Aoki, Takayuki; Sawada, Hiroyuki; Nagai, Toshirou; Tomioka, Keisuke; Tomooka, Norihiko; Sato, Toyozo; Kawase, Makoto

    2011-01-01

    The National Institute of Agrobiological Sciences (NIAS) is implementing the NIAS Genebank Project for conservation and promotion of agrobiological genetic resources to contribute to the development and utilization of agriculture and agricultural products. The project’s databases (NIASGBdb; http://www.gene.affrc.go.jp/databases_en.php) consist of a genetic resource database and a plant diseases database, linked by a web retrieval database. The genetic resources database has plant and microorganism search systems to provide information on research materials, including passport and evaluation data for genetic resources with the desired properties. To facilitate genetic diversity research, several NIAS Core Collections have been developed. The NIAS Rice (Oryza sativa) Core Collection of Japanese Landraces contains information on simple sequence repeat (SSR) polymorphisms. SSR marker information for azuki bean (Vigna angularis) and black gram (V. mungo) and DNA sequence data from some selected Japanese strains of the genus Fusarium are also available. A database of plant diseases in Japan has been developed based on the listing of common names of plant diseases compiled by the Phytopathological Society of Japan. Relevant plant and microorganism genetic resources are associated with the plant disease names by the web retrieval database and can be obtained from the NIAS Genebank for research or educational purposes. PMID:20952407

  2. Research Goes to School II: How to Go On-Line to the Information Database.

    ERIC Educational Resources Information Center

    Newman, Joan; Motomatsu, Nancy

    Designed to help educators locate the most up-to-date research and information available for decision making, this handbook summarizes a vast collection of current educational, technical, and sociological information in computer databases. As online information systems multiply and become more consumer-oriented, and as microcomputers and modems…

  3. An efficient delivery of historical information for the Mendelian Inheritance in Man database.

    PubMed Central

    Li, P.; Waldo, D.; Pineo, S.; Foster, P.

    1995-01-01

    The ability to manage information with regard to changes in a database is critical for quality control. This information can also provide audit trails about the time of the change and the person who made the change. In addition, historical information can provide the proper context in which to interpret the relationships between the current and past data. In most genomic databases, only the most recent copy of the information is presented to the user, thereby losing the audit trail and the historical context. Therefore, we have constructed a delivery mechanism for the historical information in the Mendelian Inheritance in Man database. Furthermore, this feature was designed to optionally display only the changes so that the user can bypass the unchanged portions of the text. It was anticipated that technical problems would influence the acceptance of this information delivery. However, the involvement of the editorial staff became the critical factor. PMID:8563251

  4. On the Information Content of Program Traces

    NASA Technical Reports Server (NTRS)

    Frumkin, Michael; Hood, Robert; Yan, Jerry; Saini, Subhash (Technical Monitor)

    1998-01-01

    Program traces are used for analysis of program performance, memory utilization, and communications as well as for program debugging. The trace contains records of execution events generated by monitoring units inserted into the program. The trace size limits the resolution of execution events and restricts the user's ability to analyze the program execution. We present a study of the information content of program traces and develop a coding scheme which reduces the trace size to the limit given by the trace entropy. We apply the coding to the traces of AIMS instrumented programs executed on the IBM SPA and the SCSI Power Challenge and compare it with other coding methods. Our technique shows size of the trace can be reduced by more than a factor of 5.

  5. Implementing a Schoolwide Information Literacy Program.

    ERIC Educational Resources Information Center

    Thompson, Helen; Henley, Susan

    2001-01-01

    Discusses how library media specialists can get teachers' support and cooperation to implement a schoolwide information literacy program. Highlights include national or state curriculum standards in language arts, social studies, science, and math; and an example of a poetry unit for language arts that includes information literacy and language…

  6. UNIVIEW: A computer graphics platform bringing information databases to life

    NASA Astrophysics Data System (ADS)

    Warnstam, J.

    2008-06-01

    Uniview is a PC-based software platform for three-dimensional exploration of the Universe and the visualisation of information that is located at any position in this Universe, be it on the surface of the Earth or many light-years away from home. What began as a collaborative project with the American Museum of Natural History1 in New York in 2003 has now evolved into one of the leading visualisation platforms for the planetarium and science centre market with customers in both Europe and USA.

  7. Database search for safety information on cosmetic ingredients.

    PubMed

    Pauwels, Marleen; Rogiers, Vera

    2007-12-01

    Ethical considerations with respect to experimental animal use and regulatory testing are worldwide under heavy discussion and are, in certain cases, taken up in legislative measures. The most explicit example is the European cosmetic legislation, establishing a testing ban on finished cosmetic products since 11 September 2004 and enforcing that the safety of a cosmetic product is assessed by taking into consideration "the general toxicological profile of the ingredients, their chemical structure and their level of exposure" (OJ L151, 32-37, 23 June 1993; OJ L066, 26-35, 11 March 2003). Therefore the availability of referenced and reliable information on cosmetic ingredients becomes a dire necessity. Given the high-speed progress of the World Wide Web services and the concurrent drastic increase in free access to information, identification of relevant data sources and evaluation of the scientific value and quality of the retrieved data, are crucial. Based upon own practical experience, a survey is put together of freely and commercially available data sources with their individual description, field of application, benefits and drawbacks. It should be mentioned that the search strategies described are equally useful as a starting point for any quest for safety data on chemicals or chemical-related substances in general.

  8. How to Extract Information and Knowledge from Fusion Massive Databases

    SciTech Connect

    Murari, A.; Vega, J.; Alonso, J. A.; De LaLuna, E.; Hidalgo, C.; Ratta, G. A.; Farthing, J.

    2008-03-12

    The need to understand and control the dynamics of reactor grade fusion plasmas requires the analysis of increasing amounts of data, which at JET can reach easily the level of several GBytes per shot. Therefore a series of new approaches are being pursued to store the data and to retrieve the required information. They range from loss less data compression techniques, to wavelets and Structural Pattern Recognition methods. Since the information available is very often affected by high level of uncertainties and the phenomena to be studied are complex and nonlinear, the inference problems in this field of plasma physics are particularly delicate. Even in this perspective innovative solutions are under development. In particular a range of Soft Computing approaches have already been implemented at JET. The most successful are Bayesian statistics for the integration of diagnostic measurements, Data Mining techniques to study the nonlinear correlation of various variables and Fuzzy Logic to include the knowledge of the experts even if formulated in linguistics terms. Specific methodologies are being investigated for real time control, since it poses some specific issues. In this field, a combination of hardware and software solutions, like Cellular Nonlinear Networks, are often necessary to satisfy the needs of both speed and reliability.

  9. Information system for maintaining a database of geobotanical descriptions while studying a landscape

    NASA Astrophysics Data System (ADS)

    Shchukova, K.

    2015-10-01

    Nowadays, there is a need in developing a common information space for providing a centralized data storage of geobotanical descriptions while studying a landscape and custom software for collecting, storing and processing semi-structured data. In the paper, the results of information system development for maintaining a geobotanical database are discussed. The database was developed via the bottom-up design approach and ER-model (Entity- Relationship). The analysis results of geobotanical data obtained from field studies and the database structure of geobotanical descriptions while studying a landscape are considered. At the moment, the information system for maintaining the geobotanical database is applied by the Institute of Steppe, Ural Branch of Russian Academy of Sciences.

  10. The Coral Trait Database, a curated database of trait information for coral species from the global oceans.

    PubMed

    Madin, Joshua S; Anderson, Kristen D; Andreasen, Magnus Heide; Bridge, Tom C L; Cairns, Stephen D; Connolly, Sean R; Darling, Emily S; Diaz, Marcela; Falster, Daniel S; Franklin, Erik C; Gates, Ruth D; Hoogenboom, Mia O; Huang, Danwei; Keith, Sally A; Kosnik, Matthew A; Kuo, Chao-Yang; Lough, Janice M; Lovelock, Catherine E; Luiz, Osmar; Martinelli, Julieta; Mizerek, Toni; Pandolfi, John M; Pochon, Xavier; Pratchett, Morgan S; Putnam, Hollie M; Roberts, T Edward; Stat, Michael; Wallace, Carden C; Widman, Elizabeth; Baird, Andrew H

    2016-03-29

    Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to an organism's function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. The database houses species- and individual-level data from published field and experimental studies alongside contextual data that provide important framing for analyses. In this data descriptor, we release data for 56 traits for 1547 species, and present a collaborative platform on which other trait data are being actively federated. Our overall goal is for the Coral Trait Database to become an open-source, community-led data clearinghouse that accelerates coral reef research.

  11. The Coral Trait Database, a curated database of trait information for coral species from the global oceans

    NASA Astrophysics Data System (ADS)

    Madin, Joshua S.; Anderson, Kristen D.; Andreasen, Magnus Heide; Bridge, Tom C. L.; Cairns, Stephen D.; Connolly, Sean R.; Darling, Emily S.; Diaz, Marcela; Falster, Daniel S.; Franklin, Erik C.; Gates, Ruth D.; Hoogenboom, Mia O.; Huang, Danwei; Keith, Sally A.; Kosnik, Matthew A.; Kuo, Chao-Yang; Lough, Janice M.; Lovelock, Catherine E.; Luiz, Osmar; Martinelli, Julieta; Mizerek, Toni; Pandolfi, John M.; Pochon, Xavier; Pratchett, Morgan S.; Putnam, Hollie M.; Roberts, T. Edward; Stat, Michael; Wallace, Carden C.; Widman, Elizabeth; Baird, Andrew H.

    2016-03-01

    Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. The database houses species- and individual-level data from published field and experimental studies alongside contextual data that provide important framing for analyses. In this data descriptor, we release data for 56 traits for 1547 species, and present a collaborative platform on which other trait data are being actively federated. Our overall goal is for the Coral Trait Database to become an open-source, community-led data clearinghouse that accelerates coral reef research.

  12. The Coral Trait Database, a curated database of trait information for coral species from the global oceans

    PubMed Central

    Madin, Joshua S.; Anderson, Kristen D.; Andreasen, Magnus Heide; Bridge, Tom C.L.; Cairns, Stephen D.; Connolly, Sean R.; Darling, Emily S.; Diaz, Marcela; Falster, Daniel S.; Franklin, Erik C.; Gates, Ruth D.; Hoogenboom, Mia O.; Huang, Danwei; Keith, Sally A.; Kosnik, Matthew A.; Kuo, Chao-Yang; Lough, Janice M.; Lovelock, Catherine E.; Luiz, Osmar; Martinelli, Julieta; Mizerek, Toni; Pandolfi, John M.; Pochon, Xavier; Pratchett, Morgan S.; Putnam, Hollie M.; Roberts, T. Edward; Stat, Michael; Wallace, Carden C.; Widman, Elizabeth; Baird, Andrew H.

    2016-01-01

    Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. The database houses species- and individual-level data from published field and experimental studies alongside contextual data that provide important framing for analyses. In this data descriptor, we release data for 56 traits for 1547 species, and present a collaborative platform on which other trait data are being actively federated. Our overall goal is for the Coral Trait Database to become an open-source, community-led data clearinghouse that accelerates coral reef research. PMID:27023900

  13. RESIS-II: An Updated Version of the Original Reservoir Sedimentation Survey Information System (RESIS) Database

    USGS Publications Warehouse

    Ackerman, Katherine V.; Mixon, David M.; Sundquist, Eric T.; Stallard, Robert F.; Schwarz, Gregory E.; Stewart, David W.

    2009-01-01

    The Reservoir Sedimentation Survey Information System (RESIS) database, originally compiled by the Soil Conservation Service (now the Natural Resources Conservation Service) in collaboration with the Texas Agricultural Experiment Station, is the most comprehensive compilation of data from reservoir sedimentation surveys throughout the conterminous United States (U.S.). The database is a cumulative historical archive that includes data from as early as 1755 and as late as 1993. The 1,823 reservoirs included in the database range in size from farm ponds to the largest U.S. reservoirs (such as Lake Mead). Results from 6,617 bathymetric surveys are available in the database. This Data Series provides an improved version of the original RESIS database, termed RESIS-II, and a report describing RESIS-II. The RESIS-II relational database is stored in Microsoft Access and includes more precise location coordinates for most of the reservoirs than the original database but excludes information on reservoir ownership. RESIS-II is anticipated to be a template for further improvements in the database.

  14. Embrittlement Database from the Radiation Safety Information Computational Center

    DOE Data Explorer

    The Embrittlement Data Base (EDB) is a comprehensive collection of data from surveillance capsules of U.S. commercial nuclear power reactors and from experiments in material test reactors. The collected data are contained in either the Power Reactor Embrittlement Data Base (PR-EDB) or the Test Reactor Embrittlement Data Base (TR-EDB). The EDB work includes verification of the quality of the EDB, provision for user-friendly software to access and process the data, exploration and/or confirmation of embrittlement prediction models, provision for rapid investigation of regulatory issues, and provision for the technical bases for voluntary consensus standards or regulatory guides. The EDB is designed for use with a personal computer. The data are collected into "raw data files." Traceability of all data is maintained by including complete references along with the page numbers. External data verification of the PR-EDB is the responsibility of the vendors, who were responsible for the insertion and testing of the materials in the surveillance capsules. Internal verification is accomplished by checking against references and checking for inconsistencies. Examples of information contained in the EDBs are: Charpy data, tensile data, reactor type, irradiation environments, fracture toughness data, instrumented Charpy data, pressure-temperature (P-T) data, chemistry data, and material history. The TR-EDB additionally has annealing Charpy data. The current version of the PR-EDB contains the test results from 269 Charpy capsules irradiated in 101 reactors. These results include 320 plate data points, 123 forging data points, 113 standard reference materials (SRMS) or correlation monitor (CM) points, 244 weld material data points, and 220 heat-affected-zone (HAZ) material data points. Similarly, the TR-EDB contains information for 290 SRM or CM points, 342 plate data points, 165 forging data points, 378 welds, and 55 HAZ materials. [copied from http://rsicc.ornl.gov/RelatedLinks.aspx?t=edb

  15. The Reach Address Database (RAD)

    EPA Pesticide Factsheets

    The Reach Address Database (RAD) stores reach address information for each Water Program feature that has been linked to the underlying surface water features (streams, lakes, etc) in the National Hydrology Database (NHD) Plus dataset.

  16. Extension of Generalized Fluid System Simulation Program's Fluid Property Database

    NASA Technical Reports Server (NTRS)

    Patel, Kishan

    2011-01-01

    This internship focused on the development of additional capabilities for the General Fluid Systems Simulation Program (GFSSP). GFSSP is a thermo-fluid code used to evaluate system performance by a finite volume-based network analysis method. The program was developed primarily to analyze the complex internal flow of propulsion systems and is capable of solving many problems related to thermodynamics and fluid mechanics. GFSSP is integrated with thermodynamic programs that provide fluid properties for sub-cooled, superheated, and saturation states. For fluids that are not included in the thermodynamic property program, look-up property tables can be provided. The look-up property tables of the current release version can only handle sub-cooled and superheated states. The primary purpose of the internship was to extend the look-up tables to handle saturated states. This involves a) generation of a property table using REFPROP, a thermodynamic property program that is widely used, and b) modifications of the Fortran source code to read in an additional property table containing saturation data for both saturated liquid and saturated vapor states. Also, a method was implemented to calculate the thermodynamic properties of user-fluids within the saturation region, given values of pressure and enthalpy. These additions required new code to be written, and older code had to be adjusted to accommodate the new capabilities. Ultimately, the changes will lead to the incorporation of this new capability in future versions of GFSSP. This paper describes the development and validation of the new capability.

  17. Data-Based Interval Throwing Programs for Collegiate Softball Players

    PubMed Central

    Axe, Michael J.; Windley, Thomas C.; Snyder-Mackler, Lynn

    2002-01-01

    Objective: To construct interval throwing programs followed by a simulated game for collegiate softball players at all positions. The programs are intended to be used as functional progressions within a comprehensive rehabilitation program for an injured athlete or to augment off-season conditioning workouts. Design and Setting: We collected data over a single season of National Collegiate Athletic Association softball at the University of Delaware and Goldey Beacom College. We observed 220 half-innings of play and 2785 pitches during data collection. Subjects: The subjects were collegiate-level softball players at all positions of play. Measurements: We recorded the number of pitches for pitchers. For catchers, we recorded the number of sprints to back up a play, time in the squat stance, throws back to the pitcher, and the perceived effort and distance of all other throws. We also collected the perceived effort and distance of all throws for infielders and outfielders. Results: Pitchers threw an average of 89.61 pitches per game; catchers were in the squat stance 14.13 minutes per game; infielders threw the ball between 4.28 times per game and 6.30 times per game; and outfielders threw distances of up to 175 feet. Conclusions: We devised the interval throwing programs from the data collected, field dimensions, the types of injuries found to occur in softball, and a general understanding of tissue healing. We designed programs that allow a safe and efficient progressive return to sport. PMID:12937435

  18. A distributed database system for sharing geological information using free and open source software

    NASA Astrophysics Data System (ADS)

    Nemoto, T.; Masumoto, S.; Nonogaki, S.; Raghavan, V.

    2013-12-01

    Recently, geological information, such as borehole data and geological maps, and seismic, volcanic or landslide hazard maps are published on the Internet by the national government, local governments, and research institutes in Japan. Most web systems that deliver such geological information consist of a centralized database, which are located and maintained in one location. It is easier to manage the centralized database system because all data resides in a single location. However, if the database breaks, the web service will not be available. In the present study, a distributed database system has been developed to continue delivering geological information even if a database breaks. The distributed database system has an advantage that the system remains available although an individual database is down. All the software used to construct the system is free and open source software. PostgreSQL and pgpool-II are utilized to construct a distributed database. PostgreSQL is a powerful relational database management system. Pgpool-II has a function for management of multiple PostgreSQL servers. OpenLayers is used for the web map clients. Replication and Parallel query modes with pgpool-II are utilized for distribution of a database. It is possible to create a real-time backup on 2 or more PostgreSQL clusters by replication mode. If a database breaks, the backup database will works to continue delivering geological information. Data can be split among multiple servers by using parallel query mode. The rules to send partitioned data to an appropriate cluster are contained in the System Database. If large-scale data is searched, the overall execution time will be reduced. The prototype for sharing 1500 borehole data has been successfully implemented by combination of PostgreSQL and pgpool-II on Linux server. Further development and improvement of the system are necessary to manage and analyze various spatial data in addition to borehole data. This study was supported

  19. Traditional Medicine Collection Tracking System (TM-CTS): a database for ethnobotanically driven drug-discovery programs.

    PubMed

    Harris, Eric S J; Erickson, Sean D; Tolopko, Andrew N; Cao, Shugeng; Craycroft, Jane A; Scholten, Robert; Fu, Yanling; Wang, Wenquan; Liu, Yong; Zhao, Zhongzhen; Clardy, Jon; Shamu, Caroline E; Eisenberg, David M

    2011-05-17

    Ethnobotanically driven drug-discovery programs include data related to many aspects of the preparation of botanical medicines, from initial plant collection to chemical extraction and fractionation. The Traditional Medicine Collection Tracking System (TM-CTS) was created to organize and store data of this type for an international collaborative project involving the systematic evaluation of commonly used Traditional Chinese Medicinal plants. The system was developed using domain-driven design techniques, and is implemented using Java, Hibernate, PostgreSQL, Business Intelligence and Reporting Tools (BIRT), and Apache Tomcat. The TM-CTS relational database schema contains over 70 data types, comprising over 500 data fields. The system incorporates a number of unique features that are useful in the context of ethnobotanical projects such as support for information about botanical collection, method of processing, quality tests for plants with existing pharmacopoeia standards, chemical extraction and fractionation, and historical uses of the plants. The database also accommodates data provided in multiple languages and integration with a database system built to support high throughput screening based drug discovery efforts. It is accessed via a web-based application that provides extensive, multi-format reporting capabilities. This new database system was designed to support a project evaluating the bioactivity of Chinese medicinal plants. The software used to create the database is open source, freely available, and could potentially be applied to other ethnobotanically driven natural product collection and drug-discovery programs. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

  20. Traditional Medicine Collection Tracking System (TM-CTS): A Database for Ethnobotanically-Driven Drug-Discovery Programs

    PubMed Central

    Harris, Eric S. J.; Erickson, Sean D.; Tolopko, Andrew N.; Cao, Shugeng; Craycroft, Jane A.; Scholten, Robert; Fu, Yanling; Wang, Wenquan; Liu, Yong; Zhao, Zhongzhen; Clardy, Jon; Shamu, Caroline E.; Eisenberg, David M.

    2011-01-01

    Aim of the study. Ethnobotanically-driven drug-discovery programs include data related to many aspects of the preparation of botanical medicines, from initial plant collection to chemical extraction and fractionation. The Traditional Medicine-Collection Tracking System (TM-CTS) was created to organize and store data of this type for an international collaborative project involving the systematic evaluation of commonly used Traditional Chinese Medicinal plants. Materials and Methods. The system was developed using domain-driven design techniques, and is implemented using Java, Hibernate, PostgreSQL, Business Intelligence and Reporting Tools (BIRT), and Apache Tomcat. Results. The TM-CTS relational database schema contains over 70 data types, comprising over 500 data fields. The system incorporates a number of unique features that are useful in the context of ethnobotanical projects such as support for information about botanical collection, method of processing, quality tests for plants with existing pharmacopoeia standards, chemical extraction and fractionation, and historical uses of the plants. The database also accommodates data provided in multiple languages and integration with a database system built to support high throughput screening based drug discovery efforts. It is accessed via a web-based application that provides extensive, multi-format reporting capabilities. Conclusions. This new database system was designed to support a project evaluating the bioactivity of Chinese medicinal plants. The software used to create the database is open source, freely available, and could potentially be applied to other ethnobotanically-driven natural product collection and drug-discovery programs. PMID:21420479

  1. Searching fee and non-fee toxicology information resources: an overview of selected databases.

    PubMed

    Wright, L L

    2001-01-12

    Toxicology profiles organize information by broad subjects, the first of which affirms identity of the agent studied. Studies here show two non-fee databases (ChemFinder and ChemIDplus) verify the identity of compounds with high efficiency (63% and 73% respectively) with the fee-based Chemical Abstracts Registry file serving well to fill data gaps (100%). Continued searching proceeds using knowledge of structure, scope and content to select databases. Valuable sources for information are factual databases that collect data and facts in special subject areas organized in formats available for analysis or use. Some sources representative of factual files are RTECS, CCRIS, HSDB, GENE-TOX and IRIS. Numerous factual databases offer a wealth of reliable information; however, exhaustive searches probe information published in journal articles and/or technical reports with records residing in bibliographic databases such as BIOSIS, EMBASE, MEDLINE, TOXLINE and Web of Science. Listed with descriptions are numerous factual and bibliographic databases supplied by 11 producers. Given the multitude of options and resources, it is often necessary to seek service desk assistance. Questions were posed by telephone and e-mail to service desks at DIALOG, ISI, MEDLARS, Micromedex and STN International. Results of the survey are reported.

  2. TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network

    PubMed Central

    Chun, Jung Nyeo; Cho, Hyeon Sung; Lim, Jin Muk; Kim, Hong-Gee; So, Insuk; Kwon, Dongseop; Jeon, Ju-Hong

    2012-01-01

    Transient receptor potential (TRP) channels are a family of Ca2+-permeable cation channels that play a crucial role in biological and disease processes. To advance TRP channel research, we previously created the TRIP (TRansient receptor potential channel-Interacting Protein) Database, a manually curated database that compiles scattered information on TRP channel protein-protein interactions (PPIs). However, the database needs to be improved for information accessibility and data utilization. Here, we present the TRIP Database 2.0 (http://www.trpchannel.org) in which many helpful, user-friendly web interfaces have been developed to facilitate knowledge acquisition and inspire new approaches to studying TRP channel functions: 1) the PPI information found in the supplementary data of referred articles was curated; 2) the PPI summary matrix enables users to intuitively grasp overall PPI information; 3) the search capability has been expanded to retrieve information from ‘PubMed’ and ‘PIE the search’ (a specialized search engine for PPI-related articles); and 4) the PPI data are available as sif files for network visualization and analysis using ‘Cytoscape’. Therefore, our TRIP Database 2.0 is an information hub that works toward advancing data-driven TRP channel research. PMID:23071747

  3. A national water-use information program

    USGS Publications Warehouse

    Mann, William B.; Moore, John E.; Chase, Edith B.

    1982-01-01

    The U.S. Geological Survey has compiled estimates of water use every five years since 1950. These estimates have been derived from many sources, and have a wide range of accuracy. Therefore, they fall short of providing a national data base that is both current and reliable. In 1977, the Congress of the United States recognized the need for uniform information on water use and directed the U.S. Geological Survey to establish a National Water-Use Information Program to complement the Survey's data on the availability and quality of the Nation's water resources. The National Water-Use Information Program was designed as a cooperative program between the States and the Federal Government. The goals of the program are: to collect and compile water-use data; to develop and refine computerized water-use data systems at both the State and national levels; to devise new methods and techniques to improve the collection and analysis of water-use information; and to disseminate this information to those involved in establishing water-resources policy and to those managing the resources. The program that started in 1978 in 20 States now includes participation by 47 States. Water-Use information is being compiled for 12 categories of use. Each State will have a automated data system that contains site-specific information about the water use in each category. The National Water-Use Data System will contain information for the 12 categories of use summarized by counties and river basins within each State. The national system will aid in defining how much fresh and saline surface water and ground water is withdrawn and for what purpose, how much water is consumed during use, and how much water is returned to a water body (stream, lake, or aquifer) after use.

  4. GENSHELL: A genesis database 2D to 3D shell transformation program

    SciTech Connect

    Sjaardema, G.D.

    1993-07-01

    GENSHELL is a three-dimensional shell mesh generation program. The three-dimensional shell mesh is generated by mapping a two-dimensional quadrilateral mesh into three dimensions according to one of several types of transformations: translation, mapping onto a spherical, ellipsoidal, or cylindrical surface, and mapping onto a user-defined spline surface. The generated three-dimensional mesh can then be reoriented by offsetting, reflecting about an axis, revolving about an axis, and scaling the coordinates. GENSHELL can be used to mesh complex three-dimensional geometries composed of several sections when the sections can be defined in terms of transformations of two-dimensional geometries. The code GJOIN is then used to join the separate sections into a single body. GENSHELL updates the EXODUS quality assurance and information records to help track the codes and files used to generate the mesh. GENSHELL reads and writes two-dimensional and three-dimensional mesh databases in the GENESIS database format; therefore, it is compatible with the preprocessing, postprocessing, and analysis codes in the Sandia National Laboratories Engineering Analysis Code Access System (SEACAS).

  5. Advanced technology program: information infrastructure for healthcare focused program.

    PubMed

    Spivack, Richard N

    2002-01-01

    This paper describes an initiative begun by the Advanced Technology Program in 1994 referred to as the Information Infrastructure for Healthcare (IIH) focused program. The IIH focus program began with an initial exchange of ideas among members of the private and public sectors (industry's submission of "white papers"; workshops conducted by the ATP; meetings held between individuals from both groups) to identify those technologies necessary for the development of a national information infrastructure in healthcare. A discussion of the development of the focus program through a "white paper" process notes differences that existed between what the ATP had hoped to gain through this method and how the private sector responded. A statistical description of the participants as well as a brief discussion of the ATP review and selection process is included.

  6. Program Plan for 2005: NASA Scientific and Technical Information Program

    NASA Technical Reports Server (NTRS)

    2005-01-01

    Throughout 2005 and beyond, NASA will be faced with great challenges and even greater opportunities. Following a period of reevaluation, reinvention, and transformation, we will move rapidly forward to leverage new partnerships, approaches, and technologies that will enhance the way we do business. NASA's Scientific and Technical Information (STI) Program, which functions under the auspices of the Agency's Chief Information Officer (CIO), is an integral part of NASA's future. The program supports the Agency's missions to communicate scientific knowledge and understanding and to help transfer NASA's research and development (R&D) information to the aerospace and academic communities and to the public. The STI Program helps ensure that the Agency will remain at the leading edge of R&D by quickly and efficiently capturing and sharing NASA and worldwide STI to use for problem solving, awareness, and knowledge management and transfer.

  7. A proposed key escrow system for secure patient information disclosure in biomedical research databases.

    PubMed

    Ferris, Todd A; Garrison, Gregory M; Lowe, Henry J

    2002-01-01

    Access to clinical data is of increasing importance to biomedical research. The pending HIPAA privacy regulations provide specific requirements for the release of protected health information. Under the regulations, biomedical researchers may utilize anonymized data, or adhere to HIPAA requirements regarding protected health information. In order to provide researchers with anonymized data from a clinical research database, we reviewed several published strategies for de-identification of protected health information. Critical analysis with respect to this project suggests that de-identification alone is problematic when applied to clinical research databases. We propose a hybrid system; utilizing secure key escrow, de-identification, and role-based access for IRB approved researchers.

  8. Design of Student Information Management Database Application System for Office and Departmental Target Responsibility System

    NASA Astrophysics Data System (ADS)

    Zhou, Hui

    It is the inevitable outcome of higher education reform to carry out office and departmental target responsibility system, in which statistical processing of student's information is an important part of student's performance review. On the basis of the analysis of the student's evaluation, the student information management database application system is designed by using relational database management system software in this paper. In order to implement the function of student information management, the functional requirement, overall structure, data sheets and fields, data sheet Association and software codes are designed in details.

  9. The designing and implementation of PE teaching information resource database based on broadband network

    NASA Astrophysics Data System (ADS)

    Wang, Jian

    2017-01-01

    In order to change traditional PE teaching mode and realize the interconnection, interworking and sharing of PE teaching resources, a distance PE teaching platform based on broadband network is designed and PE teaching information resource database is set up. The designing of PE teaching information resource database takes Windows NT 4/2000Server as operating system platform, Microsoft SQL Server 7.0 as RDBMS, and takes NAS technology for data storage and flow technology for video service. The analysis of system designing and implementation shows that the dynamic PE teaching information resource sharing platform based on Web Service can realize loose coupling collaboration, realize dynamic integration and active integration and has good integration, openness and encapsulation. The distance PE teaching platform based on Web Service and the design scheme of PE teaching information resource database can effectively solve and realize the interconnection, interworking and sharing of PE teaching resources and adapt to the informatization development demands of PE teaching.

  10. Knowledge sharing and information integration in healthcare using ontologies and deductive databases.

    PubMed

    Nardon, Fabiane Bizinella; Moura, Lincoln A

    2004-01-01

    This paper describes a method for using Semantic Web technologies for sharing knowledge in healthcare. It combines deductive databases and ontologies, so that it is possible to extract knowledge that has not been explicitly declared within the database. A representation of the UMLS (Unified Medical Language System) Semantic Network and Metathesaurus was created using the RDF standard, in order to represent the basic medical ontology. The inference over the knowledge base is done by the TRI-DEDALO System, a deductive data-base created to query and update RDF based knowledge sources as well as conventional relational databases. Finally, an ontology was created for the Brazilian National Health Card data interchange format, a standard to capture and transmit health encounter information throughout the country. This paper demonstrates how this approach can be used to integrate heterogeneous information and to answer complex queries in a real world environment.

  11. Online Searching of Bibliographic Databases: Microcomputer Access to National Information Systems.

    ERIC Educational Resources Information Center

    Coons, Bill

    This paper describes the range and scope of various information databases available for technicians, researchers, and managers employed in forestry and the forest products industry. Availability of information on reports of field and laboratory research, business trends, product prices, and company profiles through national distributors of…

  12. Forest Vegetation Simulator translocation techniques with the Bureau of Land Management's Forest Vegetation Information system database

    Treesearch

    Timothy A. Bottomley

    2008-01-01

    The BLM uses a database, called the Forest Vegetation Information System (FORVIS), to store, retrieve, and analyze forest resource information on a majority of their forested lands. FORVIS also has the capability of easily transferring appropriate data electronically into Forest Vegetation Simulator (FVS) for simulation runs. Only minor additional data inputs or...

  13. Decision-Support Tools and Databases to Inform Regional Stormwater Utility Development in New England

    EPA Science Inventory

    Development of stormwater utilities requires information on existing stormwater infrastructure and impervious cover as well as costs and benefits of stormwater management options. US EPA has developed a suite of databases and tools that can inform decision-making by regional sto...

  14. Online Searching of Bibliographic Databases: Microcomputer Access to National Information Systems.

    ERIC Educational Resources Information Center

    Coons, Bill

    This paper describes the range and scope of various information databases available for technicians, researchers, and managers employed in forestry and the forest products industry. Availability of information on reports of field and laboratory research, business trends, product prices, and company profiles through national distributors of…

  15. Decision-Support Tools and Databases to Inform Regional Stormwater Utility Development in New England

    EPA Science Inventory

    Development of stormwater utilities requires information on existing stormwater infrastructure and impervious cover as well as costs and benefits of stormwater management options. US EPA has developed a suite of databases and tools that can inform decision-making by regional sto...

  16. Tale of Two Databases: The History of Federally Funded Information Systems for Education and Medicine

    ERIC Educational Resources Information Center

    Weiner, Sharon A.

    2009-01-01

    Access to scholarly information in the disciplines of education and medicine occurred primarily through the simultaneous development of two bibliographic databases. The Education Resource Information Center (ERIC) originated as a resource designed to be comprehensive in its inclusion of peer-reviewed and unpublished literature for the entire…

  17. Development and Implementation of a Hierarchical Classification System for the ABI/INFORM Database.

    ERIC Educational Resources Information Center

    Bond, David K.

    A new search feature has been developed and implemented to enhance online information retrieval from the ABI/INFORM database, which includes abstracts from more than 500 journals covering all aspects of business and management. Published by Data Courier Inc., it includes material dating back to 1971. Because of the diverse nature of the database…

  18. Tale of Two Databases: The History of Federally Funded Information Systems for Education and Medicine

    ERIC Educational Resources Information Center

    Weiner, Sharon A.

    2009-01-01

    Access to scholarly information in the disciplines of education and medicine occurred primarily through the simultaneous development of two bibliographic databases. The Education Resource Information Center (ERIC) originated as a resource designed to be comprehensive in its inclusion of peer-reviewed and unpublished literature for the entire…

  19. Development and Implementation of a Hierarchical Classification System for the ABI/INFORM Database.

    ERIC Educational Resources Information Center

    Bond, David K.

    A new search feature has been developed and implemented to enhance online information retrieval from the ABI/INFORM database, which includes abstracts from more than 500 journals covering all aspects of business and management. Published by Data Courier Inc., it includes material dating back to 1971. Because of the diverse nature of the database…

  20. The Montana Rivers Information System: Edit/entry program user`s manual

    SciTech Connect

    Not Available

    1992-07-01

    The Montana Rivers Information System (MRIS) was initiated to assess the state`s fish, wildlife, and recreation value; and natural cultural and geologic features. The MRIS is now a set of data bases containing part of the information in the Natural Heritage Program natural features and threatened and endangered species data bases. The purpose of this User`s Manual is to: (1) describe to the user how to maintain the MRIS database of their choice by updating, changing, deleting, and adding records using the edit/entry programs; and (2) provide to the user all information and instructions necessary to complete data entry into the MRIS databases.

  1. Towards BioDBcore: a community-defined information specification for biological databases

    PubMed Central

    Gaudet, Pascale; Bairoch, Amos; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Attwood, Teresa K.; Bateman, Alex; Blake, Judith A.; Bult, Carol J.; Cherry, J. Michael; Chisholm, Rex L.; Cochrane, Guy; Cook, Charles E.; Eppig, Janan T.; Galperin, Michael Y.; Gentleman, Robert; Goble, Carole A.; Gojobori, Takashi; Hancock, John M.; Howe, Douglas G.; Imanishi, Tadashi; Kelso, Janet; Landsman, David; Lewis, Suzanna E.; Mizrachi, Ilene Karsch; Orchard, Sandra; Ouellette, B. F. Francis; Ranganathan, Shoba; Richardson, Lorna; Rocca-Serra, Philippe; Schofield, Paul N.; Smedley, Damian; Southan, Christopher; Tan, Tin Wee; Tatusova, Tatiana; Whetzel, Patricia L.; White, Owen; Yamasaki, Chisato

    2011-01-01

    The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases. PMID:21097465

  2. Towards BioDBcore: a community-defined information specification for biological databases

    PubMed Central

    Gaudet, Pascale; Bairoch, Amos; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Attwood, Teresa K.; Bateman, Alex; Blake, Judith A.; Bult, Carol J.; Cherry, J. Michael; Chisholm, Rex L.; Cochrane, Guy; Cook, Charles E.; Eppig, Janan T.; Galperin, Michael Y.; Gentleman, Robert; Goble, Carole A.; Gojobori, Takashi; Hancock, John M.; Howe, Douglas G.; Imanishi, Tadashi; Kelso, Janet; Landsman, David; Lewis, Suzanna E.; Karsch Mizrachi, Ilene; Orchard, Sandra; Ouellette, B.F. Francis; Ranganathan, Shoba; Richardson, Lorna; Rocca-Serra, Philippe; Schofield, Paul N.; Smedley, Damian; Southan, Christopher; Tan, Tin W.; Tatusova, Tatiana; Whetzel, Patricia L.; White, Owen; Yamasaki, Chisato

    2011-01-01

    The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources; and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases. PMID:21205783

  3. Towards BioDBcore: a community-defined information specification for biological databases.

    PubMed

    Gaudet, Pascale; Bairoch, Amos; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; Attwood, Teresa K; Bateman, Alex; Blake, Judith A; Bult, Carol J; Cherry, J Michael; Chisholm, Rex L; Cochrane, Guy; Cook, Charles E; Eppig, Janan T; Galperin, Michael Y; Gentleman, Robert; Goble, Carole A; Gojobori, Takashi; Hancock, John M; Howe, Douglas G; Imanishi, Tadashi; Kelso, Janet; Landsman, David; Lewis, Suzanna E; Mizrachi, Ilene Karsch; Orchard, Sandra; Ouellette, B F Francis; Ranganathan, Shoba; Richardson, Lorna; Rocca-Serra, Philippe; Schofield, Paul N; Smedley, Damian; Southan, Christopher; Tan, Tin Wee; Tatusova, Tatiana; Whetzel, Patricia L; White, Owen; Yamasaki, Chisato

    2011-01-01

    The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases.

  4. Clinical decision support tools: performance of personal digital assistant versus online drug information databases.

    PubMed

    Clauson, Kevin A; Polen, Hyla H; Marsh, Wallace A

    2007-12-01

    To evaluate personal digital assistant (PDA) drug information databases used to support clinical decision-making, and to compare the performance of PDA databases with their online versions. Prospective evaluation with descriptive analysis. Five drug information databases available for PDAs and online were evaluated according to their scope (inclusion of correct answers), completeness (on a 3-point scale), and ease of use; 158 question-answer pairs across 15 weighted categories of drug information essential to health care professionals were used to evaluate these databases. An overall composite score integrating these three measures was then calculated. Scores for the PDA databases and for each PDA-online pair were compared. Among the PDA databases, composite rankings, from highest to lowest, were as follows: Lexi-Drugs, Clinical Pharmacology OnHand, Epocrates Rx Pro, mobileMicromedex (now called Thomson Clinical Xpert), and Epocrates Rx free version. When we compared database pairs, online databases that had greater scope than their PDA counterparts were Clinical Pharmacology (137 vs 100 answers, p<0.001), Micromedex (132 vs 96 answers, p<0.001), Lexi-Comp Online (131 vs 119 answers, p<0.001), and Epocrates Online Premium (103 vs 98 answers, p=0.001). Only Micromedex online was more complete than its PDA version (p=0.008). Regarding ease of use, the Lexi-Drugs PDA database was superior to Lexi-Comp Online (p<0.001); however, Epocrates Online Premium, Epocrates Online Free, and Micromedex online were easier to use than their PDA counterparts (p<0.001). In terms of composite scores, only the online versions of Clinical Pharmacology and Micromedex demonstrated superiority over their PDA versions (p>0.01). Online and PDA drug information databases assist practitioners in improving their clinical decision-making. Lexi-Drugs performed significantly better than all of the other PDA databases evaluated. No PDA database demonstrated superiority to its online counterpart

  5. Survey among physicians by means of dynamic access to an Internet information server database.

    PubMed

    Hölzer, S; Kraft, H; Tafazzoli, A G; Dudeck, J

    1997-01-01

    Current database management systems, client-server architecture and the internet infrastructure are simplifying the exchange of information. Large and widespread electronic medical record systems are accessible via platform-independent browsing applications. The following brief summary shows one of the manifold conceivable applications of these technologies in medicine. It describes a survey among physicians with the scope of quality assurance in medicine. The dynamic, platform-independent, world-wide access to databases offers interesting aspects in medical informatics.

  6. 76 FR 27002 - Information Collection; National Recreation Program Administration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-10

    ... Forest Service Information Collection; National Recreation Program Administration AGENCY: Forest Service... new information collection, National Recreation Program Administration. DATES: Comments must be... INFORMATION: Title: National Recreation Program Administration. OMB Number: 0596-New. Expiration Date of...

  7. French Medical-Administrative Database for Epidemiology and Safety in Ophthalmology (EPISAFE): The EPISAFE Collaboration Program in Cataract Surgery.

    PubMed

    Daien, Vincent; Korobelnik, Jean-Francois; Delcourt, Cécile; Cougnard-Gregoire, Audrey; Delyfer, Marie Noelle; Bron, Alain M; Carrière, Isabelle; Villain, Max; Daures, Jean Pierre; Lacombe, Sandy; Mariet, Anne Sophie; Quantin, Catherine; Creuzot-Garcher, Catherine

    2017-01-01

    Medical-administrative databases are an important source of big data to assess the epidemiology of diseases and interventions, compare drugs, and investigate rare adverse events. We describe the French national health insurance system databases and the Epidemiology and Safety (EPISAFE) collaboration program in ophthalmology and illustrate the paper with recent studies that used the databases to investigate cataract surgery. The Système national d'information inter-régime de l'assurance maladie (SNIIR-AM) is one of the largest databases of medical and administrative data for a general population, covering nearly 65 million people. The SNIIR-AM database links data for all outpatient-reimbursed health expenditures, hospitalization in all 1,546 French private or public healthcare facilities, and date of death. The use of this database provides information at the scale of the entire country, allowing measurement of the impact of changes in practices and new guidelines. Between 2009 and 2012, a total of 2,717,203 eyes in 1,817,865 patients underwent cataract surgery in France, and the incidence of cataract surgery increased from 9.86 to 11.08/1,000 person-years. The 4-year cumulative risk of retinal detachment was 0.99%, and patients <60 years of age were at higher risk of retinal detachment. The incidence of pseudophakic cystoid macular edema was 0.95%. From 2005 to 2014, from data including more than 6 million procedures, the incidence of endophthalmitis after cataract surgery decreased from 0.15 to 0.05%. The EPISAFE collaboration program encompasses the key issues facing ophthalmology, including public health and public policy concerning disease incidence and prevalence, safety and adverse event monitoring, and clinical guidelines. © 2017 S. Karger AG, Basel.

  8. The development of an Ada programming support environment database: SEAD (Software Engineering and Ada Database), user's manual

    NASA Technical Reports Server (NTRS)

    Liaw, Morris; Evesson, Donna

    1988-01-01

    This is a manual for users of the Software Engineering and Ada Database (SEAD). SEAD was developed to provide an information resource to NASA and NASA contractors with respect to Ada-based resources and activities that are available or underway either in NASA or elsewhere in the worldwide Ada community. The sharing of such information will reduce the duplication of effort while improving quality in the development of future software systems. The manual describes the organization of the data in SEAD, the user interface from logging in to logging out, and concludes with a ten chapter tutorial on how to use the information in SEAD. Two appendices provide quick reference for logging into SEAD and using the keyboard of an IBM 3270 or VT100 computer terminal.

  9. TMI-2 technical information and examination program

    NASA Astrophysics Data System (ADS)

    Hess, C. J.

    1985-04-01

    In 1984, the US Department of Energy's Technical Information and Examination Program entered its fifth year of research and development work at Three Mile Island Unit 2 (TMI-2) and at the Idaho National Engineering Laboratory and other supporting laboratories. The work concentrated on six major areas: (1) waste immobilization; (2) reactor evaluation; (3) data acquisition; (4) information and industry coordination; (5) core activities, and (6) EPICOR 2 and waste research and disposition.

  10. A genotypic and phenotypic information source for marker-assisted selection of cereals: the CEREALAB database

    PubMed Central

    Milc, Justyna; Sala, Antonio; Bergamaschi, Sonia; Pecchioni, Nicola

    2011-01-01

    The CEREALAB database aims to store genotypic and phenotypic data obtained by the CEREALAB project and to integrate them with already existing data sources in order to create a tool for plant breeders and geneticists. The database can help them in unravelling the genetics of economically important phenotypic traits; in identifying and choosing molecular markers associated to key traits; and in choosing the desired parentals for breeding programs. The database is divided into three sub-schemas corresponding to the species of interest: wheat, barley and rice; each sub-schema is then divided into two sub-ontologies, regarding genotypic and phenotypic data, respectively. Database URL: http://www.cerealab.unimore.it/jws/cerealab.jnlp PMID:21247929

  11. 77 FR 3455 - Privacy Act of 1974; System of Records-Migrant Education Bypass Program Student Database

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-24

    ... Education Bypass Program Student Database AGENCY: Office of Elementary and Secondary Education, Department... a new system of records entitled ``Migrant Education Bypass Program Student Database (MEBPSD)'' (18... Database'' in the subject line of the electronic message. During and after the comment period, you...

  12. Characteristics of comprehensive Chemical Industry Database CD-NET : Centered around chemical product information file

    NASA Astrophysics Data System (ADS)

    Takano, Hideo

    This paper describes Chemical Product Information File of Chemical Industry Database, CD-NET provided by Chemical Data Service Inc.. It defines "information" first, then explains file organization and presents how Chemical product Information File is located in CD-NET. Mentioning its complementary relation with JICST's JOIS-F the author defines the File as chemical product information for business purpose. All of the information items in the File emphasize that it is exactly a type of business and practical database. To distinguish general items from important items by product, all of the information is categorized into II classes by general chemical product and by area. The scope and emphasized items under each class are described in detail.

  13. Management Information System for ESD Program Offices.

    DTIC Science & Technology

    1978-03-01

    Management Information System (MIS) functional requirements for the ESD Program Office are defined in terms of the Computer-Aided Design and Specification Tool. The development of the computer data base and a description of the MIS structure is included in the report. This report addresses management areas such as cost/budgeting, scheduling, tracking capabilities, and ECP

  14. Counsellee's experience of cancer genetic counselling with pedigrees that automatically incorporate genealogical and cancer database information.

    PubMed

    Stefansdottir, Vigdis; Johannsson, Oskar Th; Skirton, Heather; Jonsson, Jon J

    2016-07-01

    While pedigree drawing software is often utilised in genetic services, the use of genealogical databases in genetic counselling is unusual. This is mainly because of the unavailability of such databases in most countries. Electronically generated pedigrees used for cancer genetic counselling in Iceland create pedigrees that automatically incorporate information from a large, comprehensive genealogy database and nation-wide cancer registry. The aim of this descriptive qualitative study was to explore counsellees' experiences of genetic services, including family history taking, using these electronically generated pedigrees. Four online focus groups with 19 participants were formed, using an asynchronous posting method. Participants were encouraged to discuss their responses to questions posted on the website by the researcher. The main themes arising were motivation, information and trust, impact of testing and emotional responses. Most of the participants expressed trust in the method of using electronically generated pedigrees, although some voiced worries about information safety. Many experienced worry and anxiety while waiting for results of genetic testing, but limited survival guilt was noted. Family communication was either unchanged or improved following genetic counselling. The use of electronically generated pedigrees was well received by participants, and they trusted the information obtained via the databases. Age did not seem to influence responses. These results may be indicative of the particular culture in Iceland, where genealogical information is well known and freely shared. Further studies are needed to determine whether use of similar approaches to genealogical information gathering may be acceptable elsewhere.

  15. A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information.

    PubMed

    Knowlton, Michelle N; Li, Tongbin; Ren, Yongliang; Bill, Brent R; Ellis, Lynda Bm; Ekker, Stephen C

    2008-01-07

    The zebrafish is a powerful model vertebrate amenable to high throughput in vivo genetic analyses. Examples include reverse genetic screens using morpholino knockdown, expression-based screening using enhancer trapping and forward genetic screening using transposon insertional mutagenesis. We have created a database to facilitate web-based distribution of data from such genetic studies. The MOrpholino DataBase is a MySQL relational database with an online, PHP interface. Multiple quality control levels allow differential access to data in raw and finished formats. MODBv1 includes sequence information relating to almost 800 morpholinos and their targets and phenotypic data regarding the dose effect of each morpholino (mortality, toxicity and defects). To improve the searchability of this database, we have incorporated a fixed-vocabulary defect ontology that allows for the organization of morpholino affects based on anatomical structure affected and defect produced. This also allows comparison between species utilizing Phenotypic Attribute Trait Ontology (PATO) designated terminology. MODB is also cross-linked with ZFIN, allowing full searches between the two databases. MODB offers users the ability to retrieve morpholino data by sequence of morpholino or target, name of target, anatomical structure affected and defect produced. MODB data can be used for functional genomic analysis of morpholino design to maximize efficacy and minimize toxicity. MODB also serves as a template for future sequence-based functional genetic screen databases, and it is currently being used as a model for the creation of a mutagenic insertional transposon database.

  16. Northeast India Helminth Parasite Information Database (NEIHPID): Knowledge Base for Helminth Parasites.

    PubMed

    Biswal, Devendra Kumar; Debnath, Manish; Kharumnuid, Graciously; Thongnibah, Welfrank; Tandon, Veena

    2016-01-01

    Most metazoan parasites that invade vertebrate hosts belong to three phyla: Platyhelminthes, Nematoda and Acanthocephala. Many of the parasitic members of these phyla are collectively known as helminths and are causative agents of many debilitating, deforming and lethal diseases of humans and animals. The North-East India Helminth Parasite Information Database (NEIHPID) project aimed to document and characterise the spectrum of helminth parasites in the north-eastern region of India, providing host, geographical distribution, diagnostic characters and image data. The morphology-based taxonomic data are supplemented with information on DNA sequences of nuclear, ribosomal and mitochondrial gene marker regions that aid in parasite identification. In addition, the database contains raw next generation sequencing (NGS) data for 3 foodborne trematode parasites, with more to follow. The database will also provide study material for students interested in parasite biology. Users can search the database at various taxonomic levels (phylum, class, order, superfamily, family, genus, and species), or by host, habitat and geographical location. Specimen collection locations are noted as co-ordinates in a MySQL database and can be viewed on Google maps, using Google Maps JavaScript API v3. The NEIHPID database has been made freely available at http://nepiac.nehu.ac.in/index.php.

  17. Northeast India Helminth Parasite Information Database (NEIHPID): Knowledge Base for Helminth Parasites

    PubMed Central

    Debnath, Manish; Kharumnuid, Graciously; Thongnibah, Welfrank; Tandon, Veena

    2016-01-01

    Most metazoan parasites that invade vertebrate hosts belong to three phyla: Platyhelminthes, Nematoda and Acanthocephala. Many of the parasitic members of these phyla are collectively known as helminths and are causative agents of many debilitating, deforming and lethal diseases of humans and animals. The North-East India Helminth Parasite Information Database (NEIHPID) project aimed to document and characterise the spectrum of helminth parasites in the north-eastern region of India, providing host, geographical distribution, diagnostic characters and image data. The morphology-based taxonomic data are supplemented with information on DNA sequences of nuclear, ribosomal and mitochondrial gene marker regions that aid in parasite identification. In addition, the database contains raw next generation sequencing (NGS) data for 3 foodborne trematode parasites, with more to follow. The database will also provide study material for students interested in parasite biology. Users can search the database at various taxonomic levels (phylum, class, order, superfamily, family, genus, and species), or by host, habitat and geographical location. Specimen collection locations are noted as co-ordinates in a MySQL database and can be viewed on Google maps, using Google Maps JavaScript API v3. The NEIHPID database has been made freely available at http://nepiac.nehu.ac.in/index.php PMID:27285615

  18. DSSTOX NATIONAL TOXICOLOGY PROGRAM BIOASSAY ON-LINE DATABASE STRUCTURE-INDEX LOCATOR FILE: SDF FILE AND DOCUMENTATION

    EPA Science Inventory

    NTPBSI: National Toxicology Program Bioassay On-line Database Structure-Index Locator File. Database contains the results collected on approxiately 300 toxicity studies from shorter duration test and from genetic toxicity studies, both in vitro and in vivo tests.

  19. DSSTOX NATIONAL TOXICOLOGY PROGRAM BIOASSAY ON-LINE DATABASE STRUCTURE-INDEX LOCATOR FILE: SDF FILE AND DOCUMENTATION

    EPA Science Inventory

    NTPBSI: National Toxicology Program Bioassay On-line Database Structure-Index Locator File. Database contains the results collected on approxiately 300 toxicity studies from shorter duration test and from genetic toxicity studies, both in vitro and in vivo tests.

  20. Teaching Three-Dimensional Structural Chemistry Using Crystal Structure Databases. 3. The Cambridge Structural Database System: Information Content and Access Software in Educational Applications

    ERIC Educational Resources Information Center

    Battle, Gary M.; Allen, Frank H.; Ferrence, Gregory M.

    2011-01-01

    Parts 1 and 2 of this series described the educational value of experimental three-dimensional (3D) chemical structures determined by X-ray crystallography and retrieved from the crystallographic databases. In part 1, we described the information content of the Cambridge Structural Database (CSD) and discussed a representative teaching subset of…

  1. BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

    PubMed Central

    Bagger, Frederik Otzen; Sasivarevic, Damir; Sohi, Sina Hadi; Laursen, Linea Gøricke; Pundhir, Sachin; Sønderby, Casper Kaae; Winther, Ole; Rapin, Nicolas; Porse, Bo T.

    2016-01-01

    Research on human and murine haematopoiesis has resulted in a vast number of gene-expression data sets that can potentially answer questions regarding normal and aberrant blood formation. To researchers and clinicians with limited bioinformatics experience, these data have remained available, yet largely inaccessible. Current databases provide information about gene-expression but fail to answer key questions regarding co-regulation, genetic programs or effect on patient survival. To address these shortcomings, we present BloodSpot (www.bloodspot.eu), which includes and greatly extends our previously released database HemaExplorer, a database of gene expression profiles from FACS sorted healthy and malignant haematopoietic cells. A revised interactive interface simultaneously provides a plot of gene expression along with a Kaplan–Meier analysis and a hierarchical tree depicting the relationship between different cell types in the database. The database now includes 23 high-quality curated data sets relevant to normal and malignant blood formation and, in addition, we have assembled and built a unique integrated data set, BloodPool. Bloodpool contains more than 2000 samples assembled from six independent studies on acute myeloid leukemia. Furthermore, we have devised a robust sample integration procedure that allows for sensitive comparison of user-supplied patient samples in a well-defined haematopoietic cellular space. PMID:26507857

  2. Systemic inaccuracies in the National Surgical Quality Improvement Program database: Implications for accuracy and validity for neurosurgery outcomes research.

    PubMed

    Rolston, John D; Han, Seunggu J; Chang, Edward F

    2017-03-01

    The American College of Surgeons (ACS) National Surgical Quality Improvement Program (NSQIP) provides a rich database of North American surgical procedures and their complications. Yet no external source has validated the accuracy of the information within this database. Using records from the 2006 to 2013 NSQIP database, we used two methods to identify errors: (1) mismatches between the Current Procedural Terminology (CPT) code that was used to identify the surgical procedure, and the International Classification of Diseases (ICD-9) post-operative diagnosis: i.e., a diagnosis that is incompatible with a certain procedure. (2) Primary anesthetic and CPT code mismatching: i.e., anesthesia not indicated for a particular procedure. Analyzing data for movement disorders, epilepsy, and tumor resection, we found evidence of CPT code and postoperative diagnosis mismatches in 0.4-100% of cases, depending on the CPT code examined. When analyzing anesthetic data from brain tumor, epilepsy, trauma, and spine surgery, we found evidence of miscoded anesthesia in 0.1-0.8% of cases. National databases like NSQIP are an important tool for quality improvement. Yet all databases are subject to errors, and measures of internal consistency show that errors affect up to 100% of case records for certain procedures in NSQIP. Steps should be taken to improve data collection on the frontend of NSQIP, and also to ensure that future studies with NSQIP take steps to exclude erroneous cases from analysis.

  3. An informal introduction to program transformation

    SciTech Connect

    Hopkins, K.W.

    1994-08-01

    In the summer of 1992, I had the opportunity to participate in a Faculty Research Program, at Argonne National Laboratory. During that time I came in contact with some developments in computer science that were unfamiliar to me as a mathematician. Since most mathematicians have some exposure to computers, but certainly are not computer scientists, I felt it was appropriate to write a paper summarizing my introduction to program transformation. This paper is not meant to be a full explanation of the topic, but an informal introduction for the ``mathematical layman.``

  4. CICT Computing, Information, and Communications Technology Program

    NASA Technical Reports Server (NTRS)

    Laufenberg, Lawrence; Tu, Eugene (Technical Monitor)

    2002-01-01

    The CICT Program is part of the NASA Aerospace Technology Enterprise's fundamental technology thrust to develop tools. processes, and technologies that enable new aerospace system capabilities and missions. The CICT Program's four key objectives are: Provide seamless access to NASA resources- including ground-, air-, and space-based distributed information technology resources-so that NASA scientists and engineers can more easily control missions, make new scientific discoveries, and design the next-generation space vehicles, provide high-data delivery from these assets directly to users for missions, develop goal-oriented human-centered systems, and research, develop and evaluate revolutionary technology.

  5. CICT Computing, Information, and Communications Technology Program

    NASA Technical Reports Server (NTRS)

    Laufenberg, Lawrence; Tu, Eugene (Technical Monitor)

    2002-01-01

    The CICT Program is part of the NASA Aerospace Technology Enterprise's fundamental technology thrust to develop tools. processes, and technologies that enable new aerospace system capabilities and missions. The CICT Program's four key objectives are: Provide seamless access to NASA resources- including ground-, air-, and space-based distributed information technology resources-so that NASA scientists and engineers can more easily control missions, make new scientific discoveries, and design the next-generation space vehicles, provide high-data delivery from these assets directly to users for missions, develop goal-oriented human-centered systems, and research, develop and evaluate revolutionary technology.

  6. Complementary use of the SciSearch database for improved biomedical information searching.

    PubMed Central

    Brown, C M

    1998-01-01

    The use of at least two complementary online biomedical databases is generally considered critical for biomedical scientists seeking to keep fully abreast of recent research developments as well as to retrieve the highest number of relevant citations possible. Although the National Library of Medicine's MEDLINE is usually the database of choice, this paper illustrates the benefits of using another database, the Institute for Scientific Information's SciSearch, when conducting a biomedical information search. When a simple query about red wine consumption and coronary artery disease was posed simultaneously in both MEDLINE and SciSearch, a greater number of relevant citations were retrieved through SciSearch. This paper also provides suggestions for carrying out a comprehensive biomedical literature search in a rapid and efficient manner by using SciSearch in conjunction with MEDLINE. PMID:9549014

  7. AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond

    PubMed Central

    Hu, Zhi-Liang; Fritz, Eric Ryan; Reecy, James M.

    2007-01-01

    The Animal Quantitative Trait Loci (QTL) database (AnimalQTLdb) is designed to house all publicly available QTL data on livestock animal species from which researchers can easily locate and compare QTL within species. The database tools are also added to link the QTL data to other types of genomic information, such as radiation hybrid (RH) maps, finger printed contig (FPC) physical maps, linkage maps and comparative maps to the human genome, etc. Currently, this database contains data on 1287 pig, 630 cattle and 657 chicken QTL, which are dynamically linked to respective RH, FPC and human comparative maps. We plan to apply the tool to other animal species, and add more structural genome information for alignment, in an attempt to aid comparative structural genome studies (). PMID:17135205

  8. Modernization of the NASA scientific and technical information program

    NASA Technical Reports Server (NTRS)

    Cotter, Gladys A.; Hunter, Judy F.; Ostergaard, K.

    1993-01-01

    The NASA Scientific and Technical Information Program utilizes a technology infrastructure assembled in the mid 1960s to late 1970s to process and disseminate its information products. When this infrastructure was developed it placed NASA as a leader in processing STI. The retrieval engine for the STI database was the first of its kind and was used as the basis for developing commercial, other U.S., and foreign government agency retrieval systems. Due to the combination of changes in user requirements and the tremendous increase in technological capabilities readily available in the marketplace, this infrastructure is no longer the most cost-effective or efficient methodology available. Consequently, the NASA STI Program is pursuing a modernization effort that applies new technology to current processes to provide near-term benefits to the user. In conjunction with this activity, we are developing a long-term modernization strategy designed to transition the Program to a multimedia, global 'library without walls.' Critical pieces of the long-term strategy include streamlining access to sources of STI by using advances in computer networking and graphical user interfaces; creating and disseminating technical information in various electronic media including optical disks, video, and full text; and establishing a Technology Focus Group to maintain a current awareness of emerging technology and to plan for the future.

  9. 76 FR 1137 - Publicly Available Consumer Product Safety Information Database: Notice of Public Web Conferences

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-07

    ... COMMISSION Publicly Available Consumer Product Safety Information Database: Notice of Public Web Conferences... Commission (``Commission,'' ``CPSC,'' or ``we'') is announcing two Web conferences to demonstrate to...''). The Web conferences will be webcast live from the Commission's headquarters in Bethesda, MD via the...

  10. High Database Prices and Their Impact on Information Access: Is There a Solution?

    ERIC Educational Resources Information Center

    Nelson, Michael L.

    1987-01-01

    Recent trends in the pricing of online database systems are described and their impact on searcher behavior and satisfaction is discussed. A design is proposed for a major research project that would use data gathered by the Information Market Indicators to assess the feasibility of a price-based solution. (CLB)

  11. Measuring Information through Topical Subheadings of the Medline Database: A Case Study.

    ERIC Educational Resources Information Center

    Alvarez, P.; Pulgarin, A.

    1999-01-01

    Describes a method for measuring research information from thematic references such as headings and subheadings that are used in indexing, cataloging, and online searching, using the Rasch model as the measuring instrument. Discusses results of a search of anesthesiology in the Medline database that was used as a case study. (Author/LRW)

  12. Free text databases in an Integrated Academic Information System (IAIMS) at Columbia Presbyterian Medical Center.

    PubMed

    Clark, A S; Shea, S

    1991-01-01

    The use of Folio Views, a PC DOS based product for free text databases, is explored in three applications in an Integrated Academic Information System (IAIMS): (1) a telephone directory, (2) a grants and contracts newsletter, and (3) nursing care plans.

  13. Measuring Information through Topical Subheadings of the Medline Database: A Case Study.

    ERIC Educational Resources Information Center

    Alvarez, P.; Pulgarin, A.

    1999-01-01

    Describes a method for measuring research information from thematic references such as headings and subheadings that are used in indexing, cataloging, and online searching, using the Rasch model as the measuring instrument. Discusses results of a search of anesthesiology in the Medline database that was used as a case study. (Author/LRW)

  14. Discovering More Chemical Concepts from 3D Chemical Information Searches of Crystal Structure Databases

    ERIC Educational Resources Information Center

    Rzepa, Henry S.

    2016-01-01

    Three new examples are presented illustrating three-dimensional chemical information searches of the Cambridge structure database (CSD) from which basic core concepts in organic and inorganic chemistry emerge. These include connecting the regiochemistry of aromatic electrophilic substitution with the geometrical properties of hydrogen bonding…

  15. Discovering More Chemical Concepts from 3D Chemical Information Searches of Crystal Structure Databases

    ERIC Educational Resources Information Center

    Rzepa, Henry S.

    2016-01-01

    Three new examples are presented illustrating three-dimensional chemical information searches of the Cambridge structure database (CSD) from which basic core concepts in organic and inorganic chemistry emerge. These include connecting the regiochemistry of aromatic electrophilic substitution with the geometrical properties of hydrogen bonding…

  16. Auto-Indexing of the 1971-77 ABI/INFORM Database.

    ERIC Educational Resources Information Center

    Trubkin, Loene

    1979-01-01

    Describes the automatic indexing project undertaken in 1978 to convert by means of a "bridge vocabulary" the terms in the ABI/INFORM database to index terms of a controlled vocabulary. Components of the bridge vocabulary are explained, and examples demonstrating the process of conversion are provided. (JD)

  17. Technologies and standards in the information systems of the soil-geographic database of Russia

    NASA Astrophysics Data System (ADS)

    Golozubov, O. M.; Rozhkov, V. A.; Alyabina, I. O.; Ivanov, A. V.; Kolesnikova, V. M.; Shoba, S. A.

    2015-01-01

    The achievements, problems, and challenges of the modern stage of the development of the Soil-Geographic Database of Russia (SGDBR) and the history of this project are outlined. The structure of the information system of the SGDBR as an internet-based resource to collect data on soil profiles and to integrate the geographic and attribute databases on the same platform is described. The pilot project in Rostov oblast illustrates the inclusion of regional information in the SGDBR and its application for solving practical problems. For the first time in Russia, the GeoRSS standard based on the structured hypertext representation of the geographic and attribute information has been applied in the state system for the agromonitoring of agricultural lands in Rostov oblast and information exchange through the internet.

  18. Applying the desiderata for controlled medical vocabularies to drug information databases.

    PubMed Central

    Lau, L. M.; Lam, S. H.

    1999-01-01

    Medication history has always been an integral part of the patient's medical record. With the advent of the computerized medical record and the longitudinal clinical data repository, having the medication history has enabled the development of clinical decision support system that alerts for drug to drug interactions and drug allergies. Furthermore, medication data is increasingly being analyzed from a utilization and clinical outcomes standpoint. For these activities to occur, a controlled pharmacy vocabulary akin to a controlled medical vocabulary is essential. Drug information databases are well-established sources of information for pharmacy-related data and products. However, do they measure up as a controlled vocabulary? Recent experience reviewing drug information databases and integrating pharmacy-related information into a data dictionary in real-time clinical use at multiple health care institutions have revealed several challenges and issues. These are discussed according to Cimino's desiderata for controlled medical vocabularies. PMID:10566328

  19. VaProS: a database-integration approach for protein/genome information retrieval.

    PubMed

    Gojobori, Takashi; Ikeo, Kazuho; Katayama, Yukie; Kawabata, Takeshi; Kinjo, Akira R; Kinoshita, Kengo; Kwon, Yeondae; Migita, Ohsuke; Mizutani, Hisashi; Muraoka, Masafumi; Nagata, Koji; Omori, Satoshi; Sugawara, Hideaki; Yamada, Daichi; Yura, Kei

    2016-12-01

    Life science research now heavily relies on all sorts of databases for genome sequences, transcription, protein three-dimensional (3D) structures, protein-protein interactions, phenotypes and so forth. The knowledge accumulated by all the omics research is so vast that a computer-aided search of data is now a prerequisite for starting a new study. In addition, a combinatory search throughout these databases has a chance to extract new ideas and new hypotheses that can be examined by wet-lab experiments. By virtually integrating the related databases on the Internet, we have built a new web application that facilitates life science researchers for retrieving experts' knowledge stored in the databases and for building a new hypothesis of the research target. This web application, named VaProS, puts stress on the interconnection between the functional information of genome sequences and protein 3D structures, such as structural effect of the gene mutation. In this manuscript, we present the notion of VaProS, the databases and tools that can be accessed without any knowledge of database locations and data formats, and the power of search exemplified in quest of the molecular mechanisms of lysosomal storage disease. VaProS can be freely accessed at http://p4d-info.nig.ac.jp/vapros/ .

  20. DB90: A Fortran Callable Relational Database Routine for Scientific and Engineering Computer Programs

    NASA Technical Reports Server (NTRS)

    Wrenn, Gregory A.

    2005-01-01

    This report describes a database routine called DB90 which is intended for use with scientific and engineering computer programs. The software is written in the Fortran 90/95 programming language standard with file input and output routines written in the C programming language. These routines should be completely portable to any computing platform and operating system that has Fortran 90/95 and C compilers. DB90 allows a program to supply relation names and up to 5 integer key values to uniquely identify each record of each relation. This permits the user to select records or retrieve data in any desired order.

  1. A Database for Propagation Models and Conversion to C++ Programming Language

    NASA Technical Reports Server (NTRS)

    Kantak, Anil V.; Angkasa, Krisjani; Rucker, James

    1996-01-01

    In the past few years, a computer program was produced to contain propagation models and the necessary prediction methods of most propagation phenomena. The propagation model database described here creates a user friendly environment that makes using the database easy for experienced users and novices alike. The database is designed to pass data through the desired models easily and generate relevant results quickly. The database already contains many of the propagation phenomena models accepted by the propagation community and every year new models are added. The major sources of models included are the NASA Propagation Effects Handbook or the International Radio Consultive Committee (CCIR) or publications such as the Institute for Electrical and Electronic Engineers (IEEE).

  2. A Database for Propagation Models and Conversion to C++ Programming Language

    NASA Technical Reports Server (NTRS)

    Kantak, Anil V.; Angkasa, Krisjani; Rucker, James

    1996-01-01

    In the past few years, a computer program was produced to contain propagation models and the necessary prediction methods of most propagation phenomena. The propagation model database described here creates a user friendly environment that makes using the database easy for experienced users and novices alike. The database is designed to pass data through the desired models easily and generate relevant results quickly. The database already contains many of the propagation phenomena models accepted by the propagation community and every year new models are added. The major sources of models included are the NASA Propagation Effects Handbook or the International Radio Consultive Committee (CCIR) or publications such as the Institute for Electrical and Electronic Engineers (IEEE).

  3. Development of an EMF Measurements Database, EMF Rapid Program, Project #5, Interim Report: April 1995-December 1996

    SciTech Connect

    T. Dan Bracken, Inc.

    1997-04-01

    The EMF measurement data sets in existence today were compiled with varying goals and techniques. Consequently, they have different information content as well as varying logical and physical structure. Future studies will continue to pursue varying goals and utilize techniques that cannot be known in advance. Primary goals for the EMF Measurements Database developed under the Department of Energy EMF RAPID Program are to develop a database structure that can accommodate the diversity of EMF data sets, provide guidance for production of future EMF data sets, and serve as an accessible repository of EMF measurement data. Specific objectives of the EMF Measurements Database are: o to preserve study descriptions, results and data; o to provide readily accessible, well-documented data; and o to facilitate communication among researchers. In addition, the EMF Measurements Database will encourage additional analysis of existing data sets, facilitate analysis of data from multiple projects, support design of new studies, and permit future issues in EMF exposure assessment to be addressed with existing data. Preservation of study descriptions and data is accomplished with a formal, but open, structure. Specifications have been developed for the various elements of the database. Each data set in the database is formally described by a metadata file. The structured metadata file describes the origin, development, logical and physical structure and distribution mechanism for each data set. The metadata for each data set is generated according to a specification developed for the EMF Measurements Database. The actual measurement data is contained in data Products for each data set. The number and type of data product will vary by data set. Most of the data products in the possession of the EMF Measurements Database are available for download from an Internet site. For some data sets, the data products will be maintained by other parties who may have their own access procedures

  4. The Human Intermediate Filament Database: comprehensive information on a gene family involved in many human diseases.

    PubMed

    Szeverenyi, Ildiko; Cassidy, Andrew J; Chung, Cheuk Wang; Lee, Bernett T K; Common, John E A; Ogg, Stephen C; Chen, Huijia; Sim, Shu Yin; Goh, Walter L P; Ng, Kee Woei; Simpson, John A; Chee, Li Lian; Eng, Goi Hui; Li, Bin; Lunny, Declan P; Chuon, Danny; Venkatesh, Aparna; Khoo, Kian Hoe; McLean, W H Irwin; Lim, Yun Ping; Lane, E Birgitte

    2008-03-01

    We describe a revised and expanded database on human intermediate filament proteins, a major component of the eukaryotic cytoskeleton. The family of 70 intermediate filament genes (including those encoding keratins, desmins, and lamins) is now known to be associated with a wide range of diverse diseases, at least 72 distinct human pathologies, including skin blistering, muscular dystrophy, cardiomyopathy, premature aging syndromes, neurodegenerative disorders, and cataract. To date, the database catalogs 1,274 manually-curated pathogenic sequence variants and 170 allelic variants in intermediate filament genes from over 459 peer-reviewed research articles. Unrelated cases were collected from all of the six sequence homology groups and the sequence variations were described at cDNA and protein levels with links to the related diseases and reference articles. The mutations and polymorphisms are presented in parallel with data on protein structure, gene, and chromosomal location and basic information on associated diseases. Detailed statistics relating to the variants records in the database are displayed by homology group, mutation type, affected domain, associated diseases, and nucleic and amino acid substitutions. Multiple sequence alignment algorithms can be run from queries to determine DNA or protein sequence conservation. Literature sources can be interrogated within the database and external links are provided to public databases. The database is freely and publicly accessible online at www.interfil.org (last accessed 13 September 2007). Users can query the database by various keywords and the search results can be downloaded. It is anticipated that the Human Intermediate Filament Database (HIFD) will provide a useful resource to study human genome variations for basic scientists, clinicians, and students alike.

  5. National Streamflow Information Program: Implementation Status Report

    USGS Publications Warehouse

    Norris, J. Michael

    2009-01-01

    The U.S. Geological Survey (USGS) operates and maintains a nationwide network of about 7,500 streamgages designed to provide and interpret long-term, accurate, and unbiased streamflow information to meet the multiple needs of many diverse national, regional, state, and local users. The National Streamflow Information Program (NSIP) was initiated in 2003 in response to Congressional and stakeholder concerns about (1) the decrease in the number of operating streamgages, including a disproportionate loss of streamgages with a long period of record; (2) the inability of the USGS to continue operating high-priority streamgages in an environment of reduced funding through partnerships; and (3) the increasing demand for streamflow information due to emerging resource-management issues and new data-delivery capabilities. The NSIP's mission is to provide the streamflow information and understanding required to meet national, regional, state, and local needs. Most of the existing streamgages are funded through partnerships with more than 850 other Federal, state, tribal, and local agencies. Currently, about 90 percent of the streamgages send data to the World Wide Web in near-real time (some information is transmitted within 15 minutes, whereas some lags by about 4 hours). The streamflow information collected at USGS streamgages is used for many purposes: *In water-resource appraisals and allocations - to determine how much water is available and how it is being allocated; *To provide streamflow information required by interstate agreements, compacts, and court decrees; *For engineering design of reservoirs, bridges, roads, culverts, and treatment plants; *For the operation of reservoirs, the operation of locks and dams for navigation purposes, and power production; *To identify changes in streamflow resulting from changes in land use, water use, and climate; *For streamflow forecasting, flood planning, and flood forecasting; *To support water-quality programs by allowing

  6. An integrated proteome database for two-dimensional electrophoresis data analysis and laboratory information management system.

    PubMed

    Cho, Sang Yun; Park, Kang-Sik; Shim, Jung Eun; Kwon, Min-Seok; Joo, Kil Hong; Lee, Won Suk; Chang, Joon; Kim, Hoguen; Chung, Hyun Cheol; Kim, Hyun Ok; Paik, Young-Ki

    2002-09-01

    We describe an integrated proteome database, termed Yonsei Proteome Research Center Proteome Database (YPRC-PDB) which can store, retrieve and analyze various information including two-dimensional electrophoresis (2-DE) images and associated spot information that were obtained during studies of hepatocellular carcinoma (HCC). YPRC-PDB is also designed to perform as a laboratory information management system that manages sample information, clinical background, conditions of both sample preparation and 2-DE, and entire sets of experimental results. It also features query system and data-mining applications, which are amenable to automatically analyze expression level changes of a specific protein and directly link to clinical information. The user interface is web-based, so that the results from other laboratories can be shared effectively. In particular, the master gel image query is equipped with a graphic tool that can easily identify the relationship between the specific pathological stage of HCC and expression levels of a potential marker protein on the master gel image. Thus, YPRC-PDB is a versatile integrated database suitable for subsequent analyses. The information in YPRC-PDB is updated easily and it is available to authorized users on the World Wide Web (http://yprcpdb.proteomix.org/ approximately damduck/).

  7. ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms

    PubMed Central

    Pareja, Eduardo; Pareja-Tobes, Pablo; Manrique, Marina; Pareja-Tobes, Eduardo; Bonal, Javier; Tobes, Raquel

    2006-01-01

    Background Transcriptional regulation processes are the principal mechanisms of adaptation in prokaryotes. In these processes, the regulatory proteins and the regulatory DNA signals located in extragenic regions are the key elements involved. As all extragenic spaces are putative regulatory regions, ExtraTrain covers all extragenic regions of available genomes and regulatory proteins from bacteria and archaea included in the UniProt database. Description ExtraTrain provides integrated and easily manageable information for 679816 extragenic regions and for the genes delimiting each of them. In addition ExtraTrain supplies a tool to explore extragenic regions, named Palinsight, oriented to detect and search palindromic patterns. This interactive visual tool is totally integrated in the database, allowing the search for regulatory signals in user defined sets of extragenic regions. The 26046 regulatory proteins included in ExtraTrain belong to the families AraC/XylS, ArsR, AsnC, Cold shock domain, CRP-FNR, DeoR, GntR, IclR, LacI, LuxR, LysR, MarR, MerR, NtrC/Fis, OmpR and TetR. The database follows the InterPro criteria to define these families. The information about regulators includes manually curated sets of references specifically associated to regulator entries. In order to achieve a sustainable and maintainable knowledge database ExtraTrain is a platform open to the contribution of knowledge by the scientific community providing a system for the incorporation of textual knowledge. Conclusion ExtraTrain is a new database for exploring Extragenic regions and Transcriptional information in bacteria and archaea. ExtraTrain database is available at . PMID:16539733

  8. Design, Development, and Maintenance of the GLOBE Program Website and Database

    NASA Technical Reports Server (NTRS)

    Brummer, Renate; Matsumoto, Clifford

    2004-01-01

    This is a 1-year (Fy 03) proposal to design and develop enhancements, implement improved efficiency and reliability, and provide responsive maintenance for the operational GLOBE (Global Learning and Observations to Benefit the Environment) Program website and database. This proposal is renewable, with a 5% annual inflation factor providing an approximate cost for the out years.

  9. Facilitating Research in Physician Assistant Programs: Creating a Student-Level Longitudinal Database.

    PubMed

    Morgan, Perri; Humeniuk, Katherine M; Everett, Christine M

    2015-09-01

    As physician assistant (PA) roles expand and diversify in the United States and around the world, there is a pressing need for research that illuminates how PAs may best be selected, educated, and used in health systems to maximize their potential contributions to health. Physician assistant education programs are well positioned to advance this research by collecting and organizing data on applicants, students, and graduates. Our PA program is creating a permanent longitudinal education database for research that contains extensive student-level data. This database will allow us to conduct research on all phases of PA education, from admission processes through the professional practice of our graduates. In this article, we describe our approach to constructing a longitudinal student-level research database and discuss the strengths and limitations of longitudinal databases for research on education and the practice of PAs. We hope to encourage other PA programs to initiate similar projects so that, in the future, data can be combined for use in multi-institutional research that can contribute to improved education for PA students across programs.

  10. Design, Development, and Maintenance of the GLOBE Program Website and Database

    NASA Technical Reports Server (NTRS)

    Brummer, Renate; Matsumoto, Clifford

    2004-01-01

    This is a 1-year (Fy 03) proposal to design and develop enhancements, implement improved efficiency and reliability, and provide responsive maintenance for the operational GLOBE (Global Learning and Observations to Benefit the Environment) Program website and database. This proposal is renewable, with a 5% annual inflation factor providing an approximate cost for the out years.

  11. 76 FR 4350 - Health Information Technology Extension Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-25

    ... HUMAN SERVICES Health Information Technology Extension Program ACTION: Public Notice. SUMMARY: This notice announces changes to the Health Information Technology Extension Program, which assists providers seeking to adopt and become meaningful users of health information technology, as authorized under...

  12. Establishing a high-risk neuroblastoma cohort using the Pediatric Health Information System Database.

    PubMed

    Desai, Ami V; Kavcic, Marko; Huang, Yuan-Shung; Herbst, Nicole; Fisher, Brian T; Seif, Alix E; Li, Yimei; Hennessy, Sean; Aplenc, Richard; Bagatell, Rochelle

    2014-06-01

    International Classification of Diseases, 9th Revision (ICD-9) code(s) for neuroblastoma do not exist, preventing identification of these patients in administrative databases. To overcome this challenge, a three-step algorithm, using ICD-9 codes, exclusion criteria, and manual review of chemotherapy billing data, was utilized to assemble a high-risk neuroblastoma cohort (n = 952) from the Pediatric Health Information System (PHIS) Database and validated at a single institution [sensitivity 89.1%; positive predictive value (PPV) 96.1%]. This cohort provides a data source for future comparative effectiveness and clinical epidemiology studies in high-risk neuroblastoma patients.

  13. Another Look at Taurus Littrow: An Interactive Geographic Information System DataBase

    NASA Technical Reports Server (NTRS)

    Coombs, Cassandra R.; Meisburger, J. L.; Nettles, J. W.

    1998-01-01

    A variety of data has been amassed for the Apollo 17 landing site, including topography, sample locations, and imagery. These data were compiled into a Geographic Information System (GIS) to analyze their interrelationships more easily. The database will allow the evaluation of the resource potential of the Taurus Littrow region pyroclastic deposits. The database also serves as a catalog for the returned lunar samples. This catalog includes rock type, size, and location. While this project specifically targets the Taurus Littrow region, it is applicable to other regions as well.

  14. Another Look at Taurus Littrow: An Interactive Geographic Information System DataBase

    NASA Technical Reports Server (NTRS)

    Coombs, Cassandra R.; Meisburger, J. L.; Nettles, J. W.

    1998-01-01

    A variety of data has been amassed for the Apollo 17 landing site, including topography, sample locations, and imagery. These data were compiled into a Geographic Information System (GIS) to analyze their interrelationships more easily. The database will allow the evaluation of the resource potential of the Taurus Littrow region pyroclastic deposits. The database also serves as a catalog for the returned lunar samples. This catalog includes rock type, size, and location. While this project specifically targets the Taurus Littrow region, it is applicable to other regions as well.

  15. 76 FR 53912 - FDA's Public Database of Products With Orphan-Drug Designation: Replacing Non-Informative Code...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-30

    ... HUMAN SERVICES Food and Drug Administration FDA's Public Database of Products With Orphan-Drug... its public database of products that have received orphan-drug designation. The Orphan Drug Act... received orphan designation were published on our public database with non-informative code names....

  16. From metaphor to practices: The introduction of "information engineers" into the first DNA sequence database.

    PubMed

    García-Sancho, Miguel

    2011-01-01

    This paper explores the introduction of professional systems engineers and information management practices into the first centralized DNA sequence database, developed at the European Molecular Biology Laboratory (EMBL) during the 1980s. In so doing, it complements the literature on the emergence of an information discourse after World War II and its subsequent influence in biological research. By the careers of the database creators and the computer algorithms they designed, analyzing, from the mid-1960s onwards information in biology gradually shifted from a pervasive metaphor to be embodied in practices and professionals such as those incorporated at the EMBL. I then investigate the reception of these database professionals by the EMBL biological staff, which evolved from initial disregard to necessary collaboration as the relationship between DNA, genes, and proteins turned out to be more complex than expected. The trajectories of the database professionals at the EMBL suggest that the initial subject matter of the historiography of genomics should be the long-standing practices that emerged after World War II and to a large extent originated outside biomedicine and academia. Only after addressing these practices, historians may turn to their further disciplinary assemblage in fields such as bioinformatics or biotechnology.

  17. 78 FR 20296 - Proposed Information Collection; Comment Request; Marine Recreational Information Program Fishing...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-04

    ... National Oceanic and Atmospheric Administration Proposed Information Collection; Comment Request; Marine... for revision of a current information collection. The title will be changed from ``Marine Recreational Information Program'' to ``Marine Recreational Information Program Fishing Effort Survey''....

  18. A Privacy-Preserved Analytical Method for eHealth Database with Minimized Information Loss

    PubMed Central

    Chen, Ya-Ling; Cheng, Bo-Chao; Chen, Hsueh-Lin; Lin, Chia-I; Liao, Guo-Tan; Hou, Bo-Yu; Hsu, Shih-Chun

    2012-01-01

    Digitizing medical information is an emerging trend that employs information and communication technology (ICT) to manage health records, diagnostic reports, and other medical data more effectively, in order to improve the overall quality of medical services. However, medical information is highly confidential and involves private information, even legitimate access to data raises privacy concerns. Medical records provide health information on an as-needed basis for diagnosis and treatment, and the information is also important for medical research and other health management applications. Traditional privacy risk management systems have focused on reducing reidentification risk, and they do not consider information loss. In addition, such systems cannot identify and isolate data that carries high risk of privacy violations. This paper proposes the Hiatus Tailor (HT) system, which ensures low re-identification risk for medical records, while providing more authenticated information to database users and identifying high-risk data in the database for better system management. The experimental results demonstrate that the HT system achieves much lower information loss than traditional risk management methods, with the same risk of re-identification. PMID:22969273

  19. A proposed key escrow system for secure patient information disclosure in biomedical research databases.

    PubMed Central

    Ferris, Todd A.; Garrison, Gregory M.; Lowe, Henry J.

    2002-01-01

    Access to clinical data is of increasing importance to biomedical research. The pending HIPAA privacy regulations provide specific requirements for the release of protected health information. Under the regulations, biomedical researchers may utilize anonymized data, or adhere to HIPAA requirements regarding protected health information. In order to provide researchers with anonymized data from a clinical research database, we reviewed several published strategies for de-identification of protected health information. Critical analysis with respect to this project suggests that de-identification alone is problematic when applied to clinical research databases. We propose a hybrid system; utilizing secure key escrow, de-identification, and role-based access for IRB approved researchers. PMID:12463824

  20. Collaborative development of a US/Russia safety information center database

    SciTech Connect

    Dvorack, M.A.; Smith, R.E.; Ananiychuk, V.N.; Volkova, N.A.

    1998-01-01

    One of the major outgrowths resulting from the collapse of the former Soviet Union (FSU) has been an increase in technical information exchange and dialogue between the Russian and American nuclear weapons laboratories. One area of such discussions is concerned with the safety of low probability, high consequence systems and operations. In order to further the understanding between the respective institutes in this important area, a collaborative effort has been established between Sandia National Laboratories and the two premier Russian nuclear weapons laboratories, Arzamas-16 and Chelyabinsk-70, in which a common database has been developed which contains safety information provided by all three laboratories. More than 1,200 documents have been placed by the three institutes into this database. This paper describes the details of this data base, including the types of safety information being stored.

  1. The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips.

    PubMed

    Smith, Constance M; Finger, Jacqueline H; Kadin, James A; Richardson, Joel E; Ringwald, Martin

    2014-10-01

    Because molecular mechanisms of development are extraordinarily complex, the understanding of these processes requires the integration of pertinent research data. Using the Gene Expression Database for Mouse Development (GXD) as an example, we illustrate the progress made toward this goal, and discuss relevant issues that apply to developmental databases and developmental research in general. Since its first release in 1998, GXD has served the scientific community by integrating multiple types of expression data from publications and electronic submissions and by making these data freely and widely available. Focusing on endogenous gene expression in wild-type and mutant mice and covering data from RNA in situ hybridization, in situ reporter (knock-in), immunohistochemistry, reverse transcriptase-polymerase chain reaction, Northern blot, and Western blot experiments, the database has grown tremendously over the years in terms of data content and search utilities. Currently, GXD includes over 1.4 million annotated expression results and over 260,000 images. All these data and images are readily accessible to many types of database searches. Here we describe the data and search tools of GXD; explain how to use the database most effectively; discuss how we acquire, curate, and integrate developmental expression information; and describe how the research community can help in this process. Copyright © 2014 The Authors Developmental Dynamics published by Wiley Periodicals, Inc. on behalf of American Association of Anatomists.

  2. Improvements to the Magnetics Information Consortium (MagIC) Paleo and Rock Magnetic Database

    NASA Astrophysics Data System (ADS)

    Jarboe, N.; Minnett, R.; Tauxe, L.; Koppers, A. A. P.; Constable, C.; Jonestrask, L.

    2015-12-01

    The Magnetic Information Consortium (MagIC) database (http://earthref.org/MagIC/) continues to improve the ease of data uploading and editing, the creation of complex searches, data visualization, and data downloads for the paleomagnetic, geomagnetic, and rock magnetic communities. Online data editing is now available and the need for proprietary spreadsheet software is therefore entirely negated. The data owner can change values in the database or delete entries through an HTML 5 web interface that resembles typical spreadsheets in behavior and uses. Additive uploading now allows for additions to data sets to be uploaded with a simple drag and drop interface. Searching the database has improved with the addition of more sophisticated search parameters and with the facility to use them in complex combinations. A comprehensive summary view of a search result has been added for increased quick data comprehension while a raw data view is available if one desires to see all data columns as stored in the database. Data visualization plots (ARAI, equal area, demagnetization, Zijderveld, etc.) are presented with the data when appropriate to aid the user in understanding the dataset. MagIC data associated with individual contributions or from online searches may be downloaded in the tab delimited MagIC text file format for susbsequent offline use and analysis. With input from the paleomagnetic, geomagnetic, and rock magnetic communities, the MagIC database will continue to improve as a data warehouse and resource.

  3. Database Management: Building, Changing and Using Databases. Collected Papers and Abstracts of the Mid-Year Meeting of the American Society for Information Science (15th, Portland, Oregon, May 1986).

    ERIC Educational Resources Information Center

    American Society for Information Science, Washington, DC.

    This document contains abstracts of papers on database design and management which were presented at the 1986 mid-year meeting of the American Society for Information Science (ASIS). Topics considered include: knowledge representation in a bilingual art history database; proprietary database design; relational database design; in-house databases;…

  4. Database Management: Building, Changing and Using Databases. Collected Papers and Abstracts of the Mid-Year Meeting of the American Society for Information Science (15th, Portland, Oregon, May 1986).

    ERIC Educational Resources Information Center

    American Society for Information Science, Washington, DC.

    This document contains abstracts of papers on database design and management which were presented at the 1986 mid-year meeting of the American Society for Information Science (ASIS). Topics considered include: knowledge representation in a bilingual art history database; proprietary database design; relational database design; in-house databases;…

  5. 32 CFR 2400.45 - Information Security Program Review.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 6 2013-07-01 2013-07-01 false Information Security Program Review. 2400.45... SECURITY PROGRAM Office of Science and Technology Policy Information Security Program Management § 2400.45 Information Security Program Review. (a) The Director, OSTP, shall require an annual formal review of the OSTP...

  6. 32 CFR 2400.45 - Information Security Program Review.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 32 National Defense 6 2012-07-01 2012-07-01 false Information Security Program Review. 2400.45... SECURITY PROGRAM Office of Science and Technology Policy Information Security Program Management § 2400.45 Information Security Program Review. (a) The Director, OSTP, shall require an annual formal review of the OSTP...

  7. 32 CFR 2400.45 - Information Security Program Review.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 6 2014-07-01 2014-07-01 false Information Security Program Review. 2400.45... SECURITY PROGRAM Office of Science and Technology Policy Information Security Program Management § 2400.45 Information Security Program Review. (a) The Director, OSTP, shall require an annual formal review of the OSTP...

  8. Operation database petroleum GIS results: Evaluation and application of geographic information systems to exploration and production

    SciTech Connect

    Fried, C.C. ); Leonard, J.E. )

    1990-05-01

    FACT: Maps are the principle graphic tool used in exploration and production. FACT: The geographic information systems (GTS) industry exceeds $250 million annually providing powerful mapping tools to a variety of disciplines. FACT: Geographic information systems are infrequently used in exploration and production which represents less than 2% of the total GIS sphere. Therefore, Operation Database Petroleum GIS, sponsored by AAPG's Geobyte and the National Computer Graphics Association, was conceived as an information exchange between the petroleum industry and GIS vendors to address this disparity. The objective of the database was to communicate petroleum industry requirements to GIS vendors and to demonstrate the potential of GIS to the petroleum industry. Requirements, in the form of data and problems, were developed by an industry group representing major and independent oil companies. The problems included base map, well, seismic, lease, transportation, topographic, three-dimensional, and remote sensing exercises. Data included scout well data, directional surveys, production histories, seismic shot-point locations and interpretive times, geologic interpretations (tops and structure and isopach maps), leases, topography, well logs, remote sensing images, gravity contours, and geographic reference information. Over 120 GIS vendors were offered a chance to participate, and nearly 20 engaged in the exercises. This talk will focus on the process, results, and conclusions of Operation Database Petroleum GIS.

  9. HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma

    PubMed Central

    Henrique, Tiago; José Freitas da Silveira, Nelson; Henrique Cunha Volpato, Arthur; Mioto, Mayra Mataruco; Carolina Buzzo Stefanini, Ana; Bachir Fares, Adil; Gustavo da Silva Castro Andrade, João; Masson, Carolina; Verónica Mendoza López, Rossana; Daumas Nunes, Fabio; Paulo Kowalski, Luis; Severino, Patricia; Tajara, Eloiza Helena

    2016-01-01

    The total amount of scientific literature has grown rapidly in recent years. Specifically, there are several million citations in the field of cancer. This makes it difficult, if not impossible, to manually retrieve relevant information on the mechanisms that govern tumor behavior or the neoplastic process. Furthermore, cancer is a complex disease or, more accurately, a set of diseases. The heterogeneity that permeates many tumors is particularly evident in head and neck (HN) cancer, one of the most common types of cancer worldwide. In this study, we present HNdb, a free database that aims to provide a unified and comprehensive resource of information on genes and proteins involved in HN squamous cell carcinoma, covering data on genomics, transcriptomics, proteomics, literature citations and also cross-references of external databases. Different literature searches of MEDLINE abstracts were performed using specific Medical Subject Headings (MeSH terms) for oral, oropharyngeal, hypopharyngeal and laryngeal squamous cell carcinomas. A curated gene-to-publication assignment yielded a total of 1370 genes related to HN cancer. The diversity of results allowed identifying novel and mostly unexplored gene associations, revealing, for example, that processes linked to response to steroid hormone stimulus are significantly enriched in genes related to HN carcinomas. Thus, our database expands the possibilities for gene networks investigation, providing potential hypothesis to be tested. Database URL: http://www.gencapo.famerp.br/hndb PMID:27013077

  10. DRASTIC—INSIGHTS: querying information in a plant gene expression database

    PubMed Central

    Button, Davina K.; Gartland, Kevan M. A.; Ball, Leslie D.; Natanson, Louis; Gartland, Jill S.; Lyon, Gary D.

    2006-01-01

    DRASTIC––Database Resource for the Analysis of Signal Transduction In Cells () has been created as a first step towards a data-based approach for constructing signal transduction pathways. DRASTIC is a relational database of plant expressed sequence tags and genes up- or down-regulated in response to various pathogens, chemical exposure or other treatments such as drought, salt and low temperature. More than 17700 records have been obtained from 306 treatments affecting 73 plant species from 512 peer-reviewed publications with most emphasis being placed on data from Arabidopsis thaliana. DRASTIC has been developed by the Scottish Crop Research Institute and the University of Abertay Dundee and allows rapid identification of plant genes that are up- or down-regulated by multiple treatments and those that are regulated by a very limited (or perhaps a single) treatment. The INSIGHTS (INference of cell SIGnaling HypoTheseS) suite of web-based tools allows intelligent data mining and extraction of information from the DRASTIC database. Potential response pathways can be visualized and comparisons made between gene expression patterns in response to various treatments. The knowledge gained informs plant signalling pathways and systems biology investigations. PMID:16381965

  11. High Energy Nuclear Database: A Testbed for Nuclear Data Information Technology

    SciTech Connect

    Brown, D A; Vogt, R; Beck, B; Pruet, J

    2007-04-18

    We describe the development of an on-line high-energy heavy-ion experimental database. When completed, the database will be searchable and cross-indexed with relevant publications, including published detector descriptions. While this effort is relatively new, it will eventually contain all published data from older heavy-ion programs as well as published data from current and future facilities. These data include all measured observables in proton-proton, proton-nucleus and nucleus-nucleus collisions. Once in general use, this database will have tremendous scientific payoff as it makes systematic studies easier and allows simpler benchmarking of theoretical models for a broad range of experiments. Furthermore, there is a growing need for compilations of high-energy nuclear data for applications including stockpile stewardship, technology development for inertial confinement fusion, target and source development for upcoming facilities such as the International Linear Collider and homeland security. This database is part of a larger proposal that includes the production of periodic data evaluations and topical reviews. These reviews would provide an alternative and impartial mechanism to resolve discrepancies between published data from rival experiments and between theory and experiment. Since this database will be a community resource, it requires the high-energy nuclear physics community's financial and manpower support. This project serves as a testbed for the further development of an object-oriented nuclear data format and database system. By using ''off-the-shelf'' software tools and techniques, the system is simple, robust, and extensible. Eventually we envision a ''Grand Unified Nuclear Format'' encapsulating data types used in the ENSDF, ENDF/B, EXFOR, NSR and other formats, including processed data formats.

  12. NASA University Program Management Information System

    NASA Technical Reports Server (NTRS)

    2000-01-01

    As basic policy, NASA believes that colleges and universities should be encouraged to participate in the nation's space and aeronautics program to the maximum extent practicable. Indeed, universities are considered as partners with government and industry in the nation's aerospace program. NASA:s objective is to have them bring their scientific, engineering, and social research competence to bear on aerospace problems and on the broader social, economic, and international implications of NASA's technical and scientific programs. It is expected that, in so doing, universities will strengthen both their research and their educational capabilities to contribute more effectively to the national well-being. NASA field codes and certain Headquarters program offices provide funds for those activities in universities which contribute to the mission needs of that particular NASA element. Although NASA has no predetermined amount of money to devote to university activities, the effort funded each year is substantial. This annual report is one means of documenting the NASA-university relationship, frequently denoted, collectively, as NASA's University Program. This report is consistent with agency accounting records, as the data is obtained from NASA:s Financial and Contractual Status (FACS) System, operated by the Financial Management Division and the Procurement Office. However, in accordance with interagency agreements, the orientation differs from that required for financial or procurement purposes. Any apparent discrepancies between this report and other NASA procurement or financial reports stem from the selection criteria for the data.* This report was prepared by the Education Division/FE, Office of Human Resources and Education, using a management information system which was modernized during FY 1993.

  13. NASA University Program Management Information System

    NASA Technical Reports Server (NTRS)

    Gans, Gary

    1997-01-01

    As basic policy, NASA believes that colleges and universities should be encouraged to participate in the nation's space and aeronautics program to the maximum extent practicable. Indeed, universities are considered as partners with government and industry in the nation's aerospace program. NASA's objective is to have them bring their scientific, engineering, and social research competence to bear on aerospace problems and on the broader social, economic, and international implications of NASA's technical and scientific programs. It is expected that, in so doing, universities will strengthen both their research and their educational capabilities to contribute more effectively to the national well-being. NASA field codes and certain Headquarters program offices provide funds for those activities in universities which contribute to the mission needs of that particular NASA element. Although NASA has no predetermined amount of money to devote to university activities, the effort funded each year is substantial. This annual report is one means of documenting the NASA-university relationship, frequently denoted, collectively, as NASA's University Program. This report is consistent with agency accounting records, as the data is obtained from NASA's Financial and Contractual Status (FACS) System, operated by the Financial Management Division and the Procurement Office. However, in accordance with interagency agreements, the orientation differs from that required for financial or procurement purposes. Any apparent discrepancies between this report and other NASA procurement or financial reports stem from the selection criteria for the data. This report was prepared by the Education Division/FE, Office of Human Resources and Education, using a management information system which was modernized during FY 1993.

  14. The Next Step in Educational Program Budgets and Information Resource Management: Integrated Data Structures.

    ERIC Educational Resources Information Center

    Jackowski, Edward M.

    1988-01-01

    Discusses the role that information resource management (IRM) plays in educational program-oriented budgeting (POB), and presents a theoretical IRM model. Highlights include design considerations for integrated data systems; database management systems (DBMS); and how POB data can be integrated to enhance its value and use within an educational…

  15. Comparison of Programs Used for FIA Inventory Information Dissemination and Spatial Representation

    Treesearch

    Roger C. Lowe; Chris J. Cieszewski

    2005-01-01

    Six online applications developed for the interactive display of Forest Inventory and Analysis (FIA) data in which FIA database information and query results can be viewed as or selected from interactive geographic maps are compared. The programs evaluated are the U.S. Department of Agriculture Forest Service?s online systems; a SAS server-based mapping system...

  16. Representation of chemical information in OASIS centralized 3D database for existing chemicals.

    PubMed

    Nikolov, Nikolai; Grancharov, Vanio; Stoyanova, Galya; Pavlov, Todor; Mekenyan, Ovanes

    2006-01-01

    The present inventory of existing chemicals in regulatory agencies in North America and Europe, encompassing the chemicals of the European Chemicals Bureau (EINECS, with 61 573 discrete chemicals); the Danish EPA (159 448 chemicals); the U.S. EPA (TSCA, 56 882 chemicals; HPVC, 10 546 chemicals) and pesticides' active and inactive ingredients of the U.S. EPA (1379 chemicals); the Organization for Economic Cooperation and Development (HPVC, 4750 chemicals); Environment Canada (DSL, 10851 chemicals); and the Japanese Ministry of Economy, Trade, and Industry (16811), was combined in a centralized 3D database for existing chemicals. The total number of unique chemicals from all of these databases exceeded 185 500. Defined and undefined chemical mixtures and polymers are handled, along with discrete (hydrolyzing and nonhydrolyzing) chemicals. The database manager provides the storage and retrieval of chemical structures with 2D and 3D data, accounting for molecular flexibility by using representative sets of conformers for each chemical. The electronic and geometric structures of all conformers are quantum-chemically optimized and evaluated. Hence, the database contains over 3.7 million 3D records with hundreds of millions of descriptor data items at the levels of structures, conformers, or atoms. The platform contains a highly developed search subsystem--a search is possible on Chemical Abstracts Service numbers; names; 2D and 3D fragment searches; structural, conformational, or atomic properties; affiliation in other chemical databases; structure similarity; logical combinations; saved queries; and search result exports. Models (collections of logically related descriptors) are supported, including information on a model's author, date, bioassay, organs/tissues, conditions, administration, and so forth. Fragments can be interactively constructed using a visual structure editor. A configurable database browser is designed for the inspection and editing of all types of

  17. Shewregdb: Database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1

    SciTech Connect

    Syed, Mustafa; Karpinets, Tatiana V.; Leuze, Mike; Kora, Guruprasad; Romine, Margaret F.; Uberbacher, Edward

    2009-10-15

    Shewanella oneidensis MR-1 is an important model organism for environmental research as it has an exceptional metabolic and respiratory versatility regulated by a complex regulatory network. We have developed a database to collect experimental and computational data relating to regulation of gene and protein expression and a visualization environment that enables integration of these data types. The regulatory information in the database was collected from the published literature and different Internet resources. It includes predictions of DNA regulator binding sites, sigma factor binding sites, transcription units, operons, promoters, and RNA regulators including non-coding RNAs, riboswitches, and different types of terminators. A visualization environment based on GBrowser was developed for accessing the collected information and for its overlaying with experimental data (experimental results from studies employing microarrays, proteomics, and/or gene mutagenesis) and other genome annotations.

  18. Integration of Remotely Sensed Data Into Geospatial Reference Information Databases. Un-Ggim National Approach

    NASA Astrophysics Data System (ADS)

    Arozarena, A.; Villa, G.; Valcárcel, N.; Pérez, B.

    2016-06-01

    Remote sensing satellites, together with aerial and terrestrial platforms (mobile and fixed), produce nowadays huge amounts of data coming from a wide variety of sensors. These datasets serve as main data sources for the extraction of Geospatial Reference Information (GRI), constituting the "skeleton" of any Spatial Data Infrastructure (SDI). Since very different situations can be found around the world in terms of geographic information production and management, the generation of global GRI datasets seems extremely challenging. Remotely sensed data, due to its wide availability nowadays, is able to provide fundamental sources for any production or management system present in different countries. After several automatic and semiautomatic processes including ancillary data, the extracted geospatial information is ready to become part of the GRI databases. In order to optimize these data flows for the production of high quality geospatial information and to promote its use to address global challenges several initiatives at national, continental and global levels have been put in place, such as European INSPIRE initiative and Copernicus Programme, and global initiatives such as the Group on Earth Observation/Global Earth Observation System of Systems (GEO/GEOSS) and United Nations Global Geospatial Information Management (UN-GGIM). These workflows are established mainly by public organizations, with the adequate institutional arrangements at national, regional or global levels. Other initiatives, such as Volunteered Geographic Information (VGI), on the other hand may contribute to maintain the GRI databases updated. Remotely sensed data hence becomes one of the main pillars underpinning the establishment of a global SDI, as those datasets will be used by public agencies or institutions as well as by volunteers to extract the required spatial information that in turn will feed the GRI databases. This paper intends to provide an example of how institutional

  19. [Public scientific knowledge distribution in health information, communication and information technology indexed in MEDLINE and LILACS databases].

    PubMed

    Packer, Abel Laerte; Tardelli, Adalberto Otranto; Castro, Regina Célia Figueiredo

    2007-01-01

    This study explores the distribution of international, regional and national scientific output in health information and communication, indexed in the MEDLINE and LILACS databases, between 1996 and 2005. A selection of articles was based on the hierarchical structure of Information Science in MeSH vocabulary. Four specific domains were determined: health information, medical informatics, scientific communications on healthcare and healthcare communications. The variables analyzed were: most-covered subjects and journals, author affiliation and publication countries and languages, in both databases. The Information Science category is represented in nearly 5% of MEDLINE and LILACS articles. The four domains under analysis showed a relative annual increase in MEDLINE. The Medical Informatics domain showed the highest number of records in MEDLINE, representing about half of all indexed articles. The importance of Information Science as a whole is more visible in publications from developed countries and the findings indicate the predominance of the United States, with significant growth in scientific output from China and South Korea and, to a lesser extent, Brazil.

  20. 77 FR 43236 - Proposed Information Collection; Comment Request; SURF Program Student Applicant Information

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-24

    ... Program Student Applicant Information AGENCY: National Institute of Standards and Technology (NIST... SURF (Summer Undergraduate Research Fellowship) Program. The information will be provided by student... technical evaluators and is needed to determine eligible students, select students for the program using...

  1. The cost and performance of utility commercial lighting programs. A report from the Database on Energy Efficiency Programs (DEEP) project

    SciTech Connect

    Eto, J.; Vine, E.; Shown, L.; Sonnenblick, R.; Payne, C.

    1994-05-01

    The objective of the Database on Energy Efficiency Programs (DEEP) is to document the measured cost and performance of utility-sponsored, energy-efficiency, demand-side management (DSM) programs. Consistent documentation of DSM programs is a challenging goal because of problems with data consistency, evaluation methodologies, and data reporting formats that continue to limit the usefulness and comparability of individual program results. This first DEEP report investigates the results of 20 recent commercial lighting DSM programs. The report, unlike previous reports of its kind, compares the DSM definitions and methodologies that each utility uses to compute costs and energy savings and then makes adjustments to standardize reported program results. All 20 programs were judged cost-effective when compared to avoided costs in their local areas. At an average cost of 3.9{cents}/kWh, however, utility-sponsored energy efficiency programs are not ``too cheap to meter.`` While it is generally agreed upon that utilities must take active measures to minimize the costs and rate impacts of DSM programs, the authors believe that these activities will be facilitated by industry adoption of standard definitions and reporting formats, so that the best program designs can be readily identified and adopted.

  2. 77 FR 21618 - 60-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF STATE 60-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing Electronic Form... of 1995. Title of Information Collection: Civilian Response Corps Database In-Processing...

  3. Organising multi-dimensional biological image information: the BioImage Database.

    PubMed

    Carazo, J M; Stelzer, E H; Engel, A; Fita, I; Henn, C; Machtynger, J; McNeil, P; Shotton, D M; Chagoyen, M; de Alarcón, P A; Fritsch, R; Heymann, J B; Kalko, S; Pittet, J J; Rodriguez-Tomé, P; Boudier, T

    1999-01-01

    Nowadays it is possible to unravel complex information at all levels of cellular organization by obtaining multi-dimensional image information. At the macromolecular level, three-dimensional (3D) electron microscopy, together with other techniques, is able to reach resolutions at the nanometer or subnanometer level. The information is delivered in the form of 3D volumes containing samples of a given function, for example, the electron density distribution within a given macromolecule. The same situation happens at the cellular level with the new forms of light microscopy, particularly confocal microscopy, all of which produce biological 3D volume information. Furthermore, it is possible to record sequences of images over time (videos), as well as sequences of volumes, bringing key information on the dynamics of living biological systems. It is in this context that work on BioImage started two years ago, and that its first version is now presented here. In essence, BioImage is a database specifically designed to contain multi-dimensional images, perform queries and interactively work with the resulting multi-dimensional information on the World Wide Web, as well as accomplish the required cross-database links. Two sister home pages of BioImage can be accessed at http://www. bioimage.org and http://www-embl.bioimage.org

  4. RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling.

    PubMed

    Xie, Shang-Qian; Nie, Peng; Wang, Yan; Wang, Hongwei; Li, Hongyu; Yang, Zhilong; Liu, Yizhi; Ren, Jian; Xie, Zhi

    2016-01-04

    Translational control is crucial in the regulation of gene expression and deregulation of translation is associated with a wide range of cancers and human diseases. Ribosome profiling is a technique that provides genome wide information of mRNA in translation based on deep sequencing of ribosome protected mRNA fragments (RPF). RPFdb is a comprehensive resource for hosting, analyzing and visualizing RPF data, available at www.rpfdb.org or http://sysbio.sysu.edu.cn/rpfdb/index.html. The current version of database contains 777 samples from 82 studies in 8 species, processed and reanalyzed by a unified pipeline. There are two ways to query the database: by keywords of studies or by genes. The outputs are presented in three levels. (i) Study level: including meta information of studies and reprocessed data for gene expression of translated mRNAs; (ii) Sample level: including global perspective of translated mRNA and a list of the most translated mRNA of each sample from a study; (iii) Gene level: including normalized sequence counts of translated mRNA on different genomic location of a gene from multiple samples and studies. To explore rich information provided by RPF, RPFdb also provides a genome browser to query and visualize context-specific translated mRNA. Overall our database provides a simple way to search, analyze, compare, visualize and download RPF data sets. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  5. The Poisoning Information Database Covers a Large Proportion of Real Poisoning Cases in Korea.

    PubMed

    Kim, Su Jin; Chung, Sung Phil; Gil, Hyo-Wook; Choi, Sang-Cheon; Kim, Hyun; Kang, Changwoo; Kim, Hyun Jin; Park, Jung Soo; Lee, Kyung Woo; Cho, Junho; Yoon, Jae Chol; Cho, Soohyung; Choe, Michael Sung Pil; Hwang, Tae Sik; Hong, Dae Young; Lim, Hoon; Kim, Yang-Weon; Kim, Seung Whan; Kang, Hyunggoo; Kim, Woo Jeong

    2016-07-01

    The poisoning information database (PIDB) provides clinical toxicological information on commonly encountered toxic substances in Korea. The aim of this study was to estimate the coverage rate of the PIDB by comparing the database with the distribution of toxic substances that real poisoning patients presented to 20 emergency departments. Development of the PIDB started in 2007, and the number of toxic substances increased annually from 50 to 470 substances in 2014. We retrospectively reviewed the medical records of patients with toxic exposure who visited 20 emergency departments in Korea from January to December 2013. Identified toxic substances were classified as prescription drug, agricultural chemical, household product, animal or plant, herbal drug, or other. We calculated the coverage rate of the PIDB for both the number of poisoning cases and the kinds of toxic substances. A total of 10,887 cases of intoxication among 8,145 patients was collected. The 470 substances registered in the PIDB covered 89.3% of 8,891 identified cases related to poisoning, while the same substances only covered 45.3% of the 671 kinds of identified toxic substances. According to category, 211 prescription drugs, 58 agricultural chemicals, 28 household products, and 32 animals or plants were not covered by the PIDB. This study suggested that the PIDB covered a large proportion of real poisoning cases in Korea. However, the database should be continuously extended to provide information for even rare toxic substances.

  6. The Poisoning Information Database Covers a Large Proportion of Real Poisoning Cases in Korea

    PubMed Central

    2016-01-01

    The poisoning information database (PIDB) provides clinical toxicological information on commonly encountered toxic substances in Korea. The aim of this study was to estimate the coverage rate of the PIDB by comparing the database with the distribution of toxic substances that real poisoning patients presented to 20 emergency departments. Development of the PIDB started in 2007, and the number of toxic substances increased annually from 50 to 470 substances in 2014. We retrospectively reviewed the medical records of patients with toxic exposure who visited 20 emergency departments in Korea from January to December 2013. Identified toxic substances were classified as prescription drug, agricultural chemical, household product, animal or plant, herbal drug, or other. We calculated the coverage rate of the PIDB for both the number of poisoning cases and the kinds of toxic substances. A total of 10,887 cases of intoxication among 8,145 patients was collected. The 470 substances registered in the PIDB covered 89.3% of 8,891 identified cases related to poisoning, while the same substances only covered 45.3% of the 671 kinds of identified toxic substances. According to category, 211 prescription drugs, 58 agricultural chemicals, 28 household products, and 32 animals or plants were not covered by the PIDB. This study suggested that the PIDB covered a large proportion of real poisoning cases in Korea. However, the database should be continuously extended to provide information for even rare toxic substances. PMID:27365999

  7. Information flow in the DAMA Project beyond database managers: Information flow managers

    SciTech Connect

    Russell, L.; Wolfson, O.; Yu, C.

    1996-03-01

    To meet the demands of commercial data traffic on the information highway, a new look at managing data is necessary. One projected activity, sharing of point-of-sale information, is being considered in the Demand Activated Manufacturing Project of the American Textile Partnership project. A scenario is examined in which 100,000 retail outlets communicate over a period of days. They provide the latest estimate of demand for sewn products across a chain of 26,000 suppliers through the use of bill-of-materials explosions at four levels of detail. A new paradign the information flow manager, is developed to handle this situation, including the case where members of the supply chain fail to communicate and go out of business. Techniques for approximation are introduced to keep estimates of demand as current as possible.

  8. A New Interface for the Magnetics Information Consortium (MagIC) Paleo and Rock Magnetic Database

    NASA Astrophysics Data System (ADS)

    Jarboe, N.; Minnett, R.; Koppers, A. A. P.; Tauxe, L.; Constable, C.; Shaar, R.; Jonestrask, L.

    2014-12-01

    The Magnetic Information Consortium (MagIC) database (http://earthref.org/MagIC/) continues to improve the ease of uploading data, the creation of complex searches, data visualization, and data downloads for the paleomagnetic, geomagnetic, and rock magnetic communities. Data uploading has been simplified and no longer requires the use of the Excel SmartBook interface. Instead, properly formatted MagIC text files can be dragged-and-dropped onto an HTML 5 web interface. Data can be uploaded one table at a time to facilitate ease of uploading and data error checking is done online on the whole dataset at once instead of incrementally in an Excel Console. Searching the database has improved with the addition of more sophisticated search parameters and with the ability to use them in complex combinations. Searches may also be saved as permanent URLs for easy reference or for use as a citation in a publication. Data visualization plots (ARAI, equal area, demagnetization, Zijderveld, etc.) are presented with the data when appropriate to aid the user in understanding the dataset. Data from the MagIC database may be downloaded from individual contributions or from online searches for offline use and analysis in the tab delimited MagIC text file format. With input from the paleomagnetic, geomagnetic, and rock magnetic communities, the MagIC database will continue to improve as a data warehouse and resource.

  9. A database of information on technologies for hazardous waste site remediation

    SciTech Connect

    Holter, G.M.; White, M.K.; Byrant, J.L.

    1992-04-01

    A personal-computer-based database and user interface has been developed for retrieving and reviewing information on technologies applicable to the environmental remediation of hazardous waste sites. This system and its information represent a useful source of technology information for people preparing, reviewing, and approving site remediation plans or evaluating remediation technologies. The system includes a variety of information for approximately 90 distinct remedial action technologies. A general text description of each technology is provided, together with basic engineering or design parameters and flowcharts. Information on applying a given technology includes the applicability of the technology to specific contaminants, associated technologies that may be required in conjunction to provide for complete remediation of a site, technical limitations and constraints on the use of the technology, and identification of information or site data needed to deploy the technology at a particular site. US federal regulatory information relating to each technology is also provided. In addition, the system identifies sources for more detailed information for these technologies (i.e., references and specific sites where these technologies have been used). Technologies to be considered can be selected from the complete list of technologies for which information is included, or can be chosen from a shorter list of technologies matching a set of user-specific remediation objectives. The technology information is compiled from a wide variety of sources. The system is designed to support the assessment of remedial alternatives at US sites, but should be readily adaptable to other environmental remediation situations throughout the world.

  10. World mussel watch database. National status and trends program for marine environmental quality: Technical memo

    SciTech Connect

    Cantillo, A.Y.

    1997-04-01

    The Global Ocean Observing System (GOOS) is an internationally cooordinated system for systematic operational data collection and analysis. This contribution to GOOS is an attempt to determine the levels of contaminants in mussels and oysters collected worldwide and to compare the results with the long-term Mussel Watch programs of the United States and France. A comprehensive literature search of studies using any species of mussels and/or oysters worldwide to monitor the levels of trace metals and organic contaminants was conducted and the data compiled into the World Mussel Watch database. Data sources and statistics of the database are included. Results of the World Mussel Watch and the US and France Mussel Watch programs were compared and typical levels of some trace metals in uncontaminated mussels and oysters were calculated.

  11. Introducing new technology: handheld computers and drug databases. A comparison between two residency programs.

    PubMed

    Brilla, Roland; Wartenberg, Katja Elfriede

    2004-02-01

    There have been numerous efforts to introduce and increase the use of handheld computers, also called personal digital assistants (PDA), in health care, one of which is the distribution of PDAs to Neurology residents at the University of Illinois at Chicago. The authors examined the success of this intervention by comparing PDA use and user attitudes between residents of the intervention group and residents in another residency program where the use of PDAs is neither encouraged nor discouraged. The authors examined in particular the use of drug databases on the PDA as its currently most popular application in health care. The use of PDAs for purposes not related to health care was widespread among individuals in both programs, but the use of drug databases was significantly more common in the control group, which can be interpreted as a success of the intervention.

  12. Using Patent Classification to Discover Chemical Information in a Free Patent Database: Challenges and Opportunities

    ERIC Educational Resources Information Center

    Ha¨rtinger, Stefan; Clarke, Nigel

    2016-01-01

    Developing skills for searching the patent literature is an essential element of chemical information literacy programs at the university level. The present article creates awareness of patents as a rich source of chemical information. Patent classification is introduced as a key-component in comprehensive search strategies. The free Espacenet…

  13. Using Patent Classification to Discover Chemical Information in a Free Patent Database: Challenges and Opportunities

    ERIC Educational Resources Information Center

    Ha¨rtinger, Stefan; Clarke, Nigel

    2016-01-01

    Developing skills for searching the patent literature is an essential element of chemical information literacy programs at the university level. The present article creates awareness of patents as a rich source of chemical information. Patent classification is introduced as a key-component in comprehensive search strategies. The free Espacenet…

  14. Informational database methodology for urban risk analysis.Case study: the historic centre of Bucharest

    NASA Astrophysics Data System (ADS)

    Armas, I.; Dumitrascu, S.

    2009-04-01

    , but is also a very populated area, this being factors that favour a high susceptibility level. In addition, the majority of the buildings are included in the first and second categories of seismic risk, being built between 1875 and 1940, the age of the buildings establishing an increased vulnerability to natural hazards. The methodology was developed through the contribution of three partner universities from Bucharest: the University of Bucharest, the Academy for Economic Studies and the Technical University of Constructions. The method suggested was based on the analysis and processing of digital and statistical spatial information resulted from 1:500 topographical plans, satellite pictures, archives and historical maps used for the identification of the age of the buildings. Also, an important stage was represented by the field investigations that resulted with the data used in the assessment of the buildings: year of construction, location and vicinity, height, number of floors, state and function of the building, equipment and construction type. The information collected from the field together with the data resulted from the digitization of the ortophotoplans were inserted in ArcGIS in order to compile the database. Furthermore, the team from the Cybernetics Faculty developed a special software package in Visual Studio and SQL server in order to insert the sheets in GIS so that they could be statistically processed. The final product of the study is a program that includes as main functions editing, the analysis based on selected factors (individual or group) and viewing of building information in the shape of maps or 3D visualization. The strengths of the informational system resulted are given by the extended range of applicability, the short processing period, accessibility, capacity of support for a large amount of information and, thus, standing out as an adequate instrument to fit the needs of a susceptible population.

  15. 75 FR 45600 - Information Collection: Emergency Conservation Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-03

    ... Farm Service Agency Information Collection: Emergency Conservation Program AGENCY: Farm Service Agency... Emergency Conservation Program (ECP). To assist with the modernization of ECP, new forms, which allow for..., Conservation and Environmental Programs Division, Farm Service Agency, United States Department of...

  16. Policy Gradient Adaptive Dynamic Programming for Data-Based Optimal Control.

    PubMed

    Luo, Biao; Liu, Derong; Wu, Huai-Ning; Wang, Ding; Lewis, Frank L

    2016-11-22

    The model-free optimal control problem of general discrete-time nonlinear systems is considered in this paper, and a data-based policy gradient adaptive dynamic programming (PGADP) algorithm is developed to design an adaptive optimal controller method. By using offline and online data rather than the mathematical system model, the PGADP algorithm improves control policy with a gradient descent scheme. The convergence of the PGADP algorithm is proved by demonstrating that the constructed.

  17. A Data-Based Financial Management Information System (FMIS) for Administrative Sciences Department

    DTIC Science & Technology

    1990-12-01

    Financial Management Information System that would result in improved management of financial assets, better use of clerical skills, and more detailed...develops and implements a personal computer-based Management Information System for the Management of the many funding accounts controlled by the...different software programs, into a single all-encompassing Management Information System . The system was written using dBASE IV and is currently operational.

  18. 76 FR 19310 - Information Collection; Certified State Mediation Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-07

    ... Farm Service Agency Information Collection; Certified State Mediation Program AGENCY: Farm Service... Mediation Program. The information collection is necessary to ensure the grant program is being administered... following methods: Mail: Carol Wagner, Certified State Mediation Program Manager, USDA, FSA, Appeals and...

  19. 32 CFR 2400.45 - Information Security Program Review.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... TECHNOLOGY POLICY REGULATIONS TO IMPLEMENT E.O. 12356; OFFICE OF SCIENCE AND TECHNOLOGY POLICY INFORMATION SECURITY PROGRAM Office of Science and Technology Policy Information Security Program Management § 2400.45... 32 National Defense 6 2010-07-01 2010-07-01 false Information Security Program Review....

  20. 32 CFR 2400.45 - Information Security Program Review.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... TECHNOLOGY POLICY REGULATIONS TO IMPLEMENT E.O. 12356; OFFICE OF SCIENCE AND TECHNOLOGY POLICY INFORMATION SECURITY PROGRAM Office of Science and Technology Policy Information Security Program Management § 2400.45... 32 National Defense 6 2011-07-01 2011-07-01 false Information Security Program Review....

  1. Validation and extraction of molecular-geometry information from small-molecule databases

    PubMed Central

    Long, Fei; Emsley, Paul; Gražulis, Saulius; Merkys, Andrius; Vaitkus, Antanas

    2017-01-01

    A freely available small-molecule structure database, the Crystallography Open Database (COD), is used for the extraction of molecular-geometry information on small-molecule compounds. The results are used for the generation of new ligand descriptions, which are subsequently used by macromolecular model-building and structure-refinement software. To increase the reliability of the derived data, and therefore the new ligand descriptions, the entries from this database were subjected to very strict validation. The selection criteria made sure that the crystal structures used to derive atom types, bond and angle classes are of sufficiently high quality. Any suspicious entries at a crystal or molecular level were removed from further consideration. The selection criteria included (i) the resolution of the data used for refinement (entries solved at 0.84 Å resolution or higher) and (ii) the structure-solution method (structures must be from a single-crystal experiment and all atoms of generated molecules must have full occupancies), as well as basic sanity checks such as (iii) consistency between the valences and the number of connections between atoms, (iv) acceptable bond-length deviations from the expected values and (v) detection of atomic collisions. The derived atom types and bond classes were then validated using high-order moment-based statistical techniques. The results of the statistical analyses were fed back to fine-tune the atom typing. The developed procedure was repeated four times, resulting in fine-grained atom typing, bond and angle classes. The procedure will be repeated in the future as and when new entries are deposited in the COD. The whole procedure can also be applied to any source of small-molecule structures, including the Cambridge Structural Database and the ZINC database. PMID:28177306

  2. Combining new technologies for effective collection development: a bibliometric study using CD-ROM and a database management program.

    PubMed Central

    Burnham, J F; Shearer, B S; Wall, J C

    1992-01-01

    Librarians have used bibliometrics for many years to assess collections and to provide data for making selection and deselection decisions. With the advent of new technology--specifically, CD-ROM databases and reprint file database management programs--new cost-effective procedures can be developed. This paper describes a recent multidisciplinary study conducted by two library faculty members and one allied health faculty member to test a bibliometric method that used the MEDLINE and CINAHL databases on CD-ROM and the Papyrus database management program to produce a new collection development methodology. PMID:1600424

  3. Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes

    PubMed Central

    Hirahata, Masaki; Abe, Takashi; Tanaka, Naoto; Kuwana, Yoshikazu; Shigemoto, Yasumasa; Miyazaki, Satoru; Suzuki, Yoshiyuki; Sugawara, Hideaki

    2007-01-01

    Genome Information Broker for Viruses (GIB-V) is a comprehensive virus genome/segment database. We extracted 18 418 complete virus genomes/segments from the International Nucleotide Sequence Database Collaboration (INSDC, ) by DNA Data Bank of Japan (DDBJ), EMBL and GenBank and stored them in our system. The list of registered viruses is arranged hierarchically according to taxonomy. Keyword searches can be performed for genome/segment data or biological features of any virus stored in GIB-V. GIB-V is equipped with a BLAST search function, and search results are displayed graphically or in list form. Moreover, the BLAST results can be used online with the ClustalW feature of the DDBJ. All available virus genome/segment data can be collected by the GIB-V download function. GIB-V can be accessed at no charge at . PMID:17158166

  4. A distributed intelligent information system with natural language input for ad hoc knowledge discovery in databases

    SciTech Connect

    Fass, D.; Hall, G.; Laurens, O.; McFetridge, P.; Popowich, F.; Rueden, M. von

    1996-11-01

    A distributed information system is described which features a graphic user interface incorporating natural language input and which provides ad hoc knowledge discovery in relational databases. The system is comprised of multiple processes which communicate with each other over a network. The knowledge discovery process involves extracting generalizations from data using background knowledge in the form of concept hierarchies and a learning procedure based upon an attribute-oriented induction technique. The natural language understanding process is a parser based on Head-Driven Phrase Structure Grammar (HPSG), a modern lexicon-based grammar formalism better equipped than older rule-based approaches for handling the often idiosyncratic behavior of words. To generate semantic interpretations, the parser makes use of a process which orders logical access paths in unnormalized databases based on the strength of their dependency structures and on their efficiency of execution.

  5. Nucleic Acid Database: a Repository of Three-Dimensional Information about Nucleic Acids

    DOE Data Explorer

    Berman, H. M.; Olson, W. K.; Beveridge, D. L.; Westbrook, J.; Gelbin, A.; Demeny, T.; Hsieh, S. H.; Srinivasan, A. R.; Schneider, B.

    The Nucleic Acid Database (NDB) provides 3-D structural information about nucleic acids.  It is a relational database designed to facilitate the easy search for nucleic acid structures using any of the stored primary or derived structural features. Reports can then be created describing any properties of the selected structures and structures may be viewed in several different formats, including the mmCIF format, the NDB Atlas format, the NDB coordinate format, or the PDB coordinate format. Browsing structure images created directly from coordinates in the repository can also be done. More than 7000 structures have been released as of May 2014. This website also includes a number of specialized tools and interfaces. The NDB Project is funded by the National Institutes of Health and has been funded by the National Science Foundation and the Department of Energy in the past.

  6. Turning text into research networks: information retrieval and computational ontologies in the creation of scientific databases.

    PubMed

    Ceci, Flávio; Pietrobon, Ricardo; Gonçalves, Alexandre Leopoldo

    2012-01-01

    Web-based, free-text documents on science and technology have been increasing growing on the web. However, most of these documents are not immediately processable by computers slowing down the acquisition of useful information. Computational ontologies might represent a possible solution by enabling semantically machine readable data sets. But, the process of ontology creation, instantiation and maintenance is still based on manual methodologies and thus time and cost intensive. We focused on a large corpus containing information on researchers, research fields, and institutions. We based our strategy on traditional entity recognition, social computing and correlation. We devised a semi automatic approach for the recognition, correlation and extraction of named entities and relations from textual documents which are then used to create, instantiate, and maintain an ontology. We present a prototype demonstrating the applicability of the proposed strategy, along with a case study describing how direct and indirect relations can be extracted from academic and professional activities registered in a database of curriculum vitae in free-text format. We present evidence that this system can identify entities to assist in the process of knowledge extraction and representation to support ontology maintenance. We also demonstrate the extraction of relationships among ontology classes and their instances. We have demonstrated that our system can be used for the conversion of research information in free text format into database with a semantic structure. Future studies should test this system using the growing number of free-text information available at the institutional and national levels.

  7. OpenTrials: towards a collaborative open database of all available information on all clinical trials.

    PubMed

    Goldacre, Ben; Gray, Jonathan

    2016-04-08

    OpenTrials is a collaborative and open database for all available structured data and documents on all clinical trials, threaded together by individual trial. With a versatile and expandable data schema, it is initially designed to host and match the following documents and data for each trial: registry entries; links, abstracts, or texts of academic journal papers; portions of regulatory documents describing individual trials; structured data on methods and results extracted by systematic reviewers or other researchers; clinical study reports; and additional documents such as blank consent forms, blank case report forms, and protocols. The intention is to create an open, freely re-usable index of all such information and to increase discoverability, facilitate research, identify inconsistent data, enable audits on the availability and completeness of this information, support advocacy for better data and drive up standards around open data in evidence-based medicine. The project has phase I funding. This will allow us to create a practical data schema and populate the database initially through web-scraping, basic record linkage techniques, crowd-sourced curation around selected drug areas, and import of existing sources of structured and documents. It will also allow us to create user-friendly web interfaces onto the data and conduct user engagement workshops to optimise the database and interface designs. Where other projects have set out to manually and perfectly curate a narrow range of information on a smaller number of trials, we aim to use a broader range of techniques and attempt to match a very large quantity of information on all trials. We are currently seeking feedback and additional sources of structured data.

  8. National information network and database system of hazardous waste management in China

    SciTech Connect

    Ma Hongchang

    1996-12-31

    Industries in China generate large volumes of hazardous waste, which makes it essential for the nation to pay more attention to hazardous waste management. National laws and regulations, waste surveys, and manifest tracking and permission systems have been initiated. Some centralized hazardous waste disposal facilities are under construction. China`s National Environmental Protection Agency (NEPA) has also obtained valuable information on hazardous waste management from developed countries. To effectively share this information with local environmental protection bureaus, NEPA developed a national information network and database system for hazardous waste management. This information network will have such functions as information collection, inquiry, and connection. The long-term objective is to establish and develop a national and local hazardous waste management information network. This network will significantly help decision makers and researchers because it will be easy to obtain information (e.g., experiences of developed countries in hazardous waste management) to enhance hazardous waste management in China. The information network consists of five parts: technology consulting, import-export management, regulation inquiry, waste survey, and literature inquiry.

  9. 7 CFR 1493.30 - Information required for program participation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE EXPORT PROGRAMS CCC EXPORT CREDIT GUARANTEE PROGRAMS CCC Export Credit Guarantee Program (GSM-102) and CCC Intermediate Export Credit Guarantee Program (GSM-103) Operations § 1493.30 Information required for program participation. Before CCC will accept an application...

  10. 7 CFR 1493.30 - Information required for program participation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE EXPORT PROGRAMS CCC EXPORT CREDIT GUARANTEE PROGRAMS CCC Export Credit Guarantee Program (GSM-102) and CCC Intermediate Export Credit Guarantee Program (GSM-103) Operations § 1493.30 Information required for program participation. Before CCC will accept an application...

  11. 7 CFR 1493.30 - Information required for program participation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE EXPORT PROGRAMS CCC EXPORT CREDIT GUARANTEE PROGRAMS CCC Export Credit Guarantee Program (GSM-102) and CCC Intermediate Export Credit Guarantee Program (GSM-103) Operations § 1493.30 Information required for program participation. Before CCC will accept an application...

  12. 75 FR 68418 - Real-Time System Management Information Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-08

    ... Federal Highway Administration 23 CFR Part 511 RIN 2125-AF19 Real-Time System Management Information... System Management Information Program that provides, in all States, the capability to monitor, in real... traveler information. The purposes of the Real-Time System Management Information Program are to:...

  13. A Web-based multi-database system supporting distributed collaborative management and sharing of microarray experiment information.

    PubMed

    Burgarella, Sarah; Cattaneo, Dario; Masseroli, Marco

    2006-01-01

    We developed MicroGen, a multi-database Web based system for managing all the information characterizing spotted microarray experiments. It supports information gathering and storing according to the Minimum Information About Microarray Experiments (MIAME) standard. It also allows easy sharing of information and data among all multidisciplinary actors involved in spotted microarray experiments.

  14. A Web-Based Multi-Database System Supporting Distributed Collaborative Management and Sharing of Microarray Experiment Information

    PubMed Central

    Burgarella, Sarah; Cattaneo, Dario; Masseroli, Marco

    2006-01-01

    We developed MicroGen, a multi-database Web based system for managing all the information characterizing spotted microarray experiments. It supports information gathering and storing according to the Minimum Information About Microarray Experiments (MIAME) standard. It also allows easy sharing of information and data among all multidisciplinary actors involved in spotted microarray experiments. PMID:17238488

  15. PhasePlot: A Software Program for Visualizing Phase Relations Computed Using Thermochemical Models and Databases

    NASA Astrophysics Data System (ADS)

    Ghiorso, M. S.

    2011-12-01

    A new software program has been developed for Macintosh computers that permits the visualization of phase relations calculated from thermodynamic data-model collections. The data-model collections of MELTS (Ghiorso and Sack, 1995, CMP 119, 197-212), pMELTS (Ghiorso et al., 2002, G-cubed 3, 10.1029/2001GC000217) and the deep mantle database of Stixrude and Lithgow-Bertelloni (2011, GJI 184, 1180-1213) are currently implemented. The software allows users to enter a system bulk composition and a range of reference conditions and then calculate a grid of phase relations. These relations may be visualized in a variety of ways including phase diagrams, phase proportion plots, and contour diagrams of phase compositions and abundances. Results may be exported into Excel or similar spreadsheet applications. Flexibility in stipulating reference conditions permit the construction of temperature-pressure, temperature-volume, entropy-pressure, or entropy-volume display grids. Calculations on the grid are performed for fixed bulk composition or in open systems governed by user specified constraints on component chemical potentials (e.g., specified oxygen fugacity buffers). The calculation engine for the software is optimized for multi-core compute architectures and is very fast, allowing a typical grid of 64 points to be calculated in under 10 seconds on a dual-core laptop/iMac. The underlying computational thermodynamic algorithms have been optimized for speed and robust behavior. Taken together, both of these advances facilitate in classroom demonstrations and permit novice users to work with the program effectively, focusing on problem specification and interpretation of results rather than on manipulation and mechanics of computation - a key feature of an effective instructional tool. The emphasis in this software package is graphical visualization, which aids in better comprehension of complex phase relations in multicomponent systems. Anecdotal experience in using Phase

  16. Data-Based Interval Hitting Program for Female College Volleyball Players

    PubMed Central

    Hurd, Wendy; Hunter-Giordano, Airelle; Axe, Michael; Snyder-Mackler, Lynn

    2009-01-01

    Context: Interval sports programs are a critical rehabilitation element when preparing the injured athlete for a return to preinjury activities. There is currently no published interval hitting program to guide a return to unrestricted play for the volleyball athlete. Therefore, data-based, position-specific overhead hitting programs that control for intensity, time, and number of ball strikes were developed for female college volleyball players. Evidence Acquisition: Records from a single Division I varsity women’s volleyball team were examined for all matches during 7 consecutive years of team play. Data were collected for number of hitting and service attempts per game for each position and the number of games per match. Results: Per game, middle hitters averaged 4.51 attacks and 2.77 service attempts; right-side hitters, 3.58 attacks and 1.26 service attempts; outside hitters, 6.37 attacks and 3.44 service attempts; and setters and defensive specialists, 0.17 attacks and 1.78 service attempts. Conclusion: The interval hitting program can provide rehabilitation specialists with a data-based approach that may facilitate a return to play and minimize the risk of reinjury for volleyball athletes. PMID:23015917

  17. The Optical Memory Card: Its Role In Distributing Digital Information From Large Databases

    NASA Astrophysics Data System (ADS)

    Barnes, Robert B.; Sukernick, Frank J.

    1987-01-01

    The efficient storage and retrieval of technical information in wholly digital form has begun. The Computer Aided Logistics Support (CALS) initiative of the Office of the Secretary of Defense (OSD) has established a goal to transition from today's paper-based system to a digital system for logistics and technical information. This action will meet the projected information distribution requirements of the DoD and provide both an example and stimulus for similar action throughout our industrial society. A number of major aerospace contractors are already focusing on the efficient storage and retrieval of technical information from very large digital databases. However, for this information to be useable in the field, it must be made available in logical unit sizes and distributed in a convenient medium. This paper suggests that the optical memory card could become that medium. Using technology similar to today's writeable optical disks, optical memory cards will make it possible to conveniently distribute and use digital information. For example, the Drexon LaserCardTM brand of optical memory card, while only the size of a standard credit card, can hold up to 2 megabytes of updateable digital information (about 800 pages of text or 200 pages of integrated text and graphics) and can be issued in on-demand quantities. Thus, optical memory cards have the potential to significantly contribute to the overall needs of both government and industry.

  18. Lapin Data Interchange Among Database, Analysis and Display Programs Using XML-Based Text Files

    NASA Technical Reports Server (NTRS)

    2005-01-01

    The purpose of grant NCC3-966 was to investigate and evaluate the interchange of application-specific data among multiple programs each carrying out part of the analysis and design task. This has been carried out previously by creating a custom program to read data produced by one application and then write that data to a file whose format is specific to the second application that needs all or part of that data. In this investigation, data of interest is described using the XML markup language that allows the data to be stored in a text-string. Software to transform output data of a task into an XML-string and software to read an XML string and extract all or a portion of the data needed for another application is used to link two independent applications together as part of an overall design effort. This approach was initially used with a standard analysis program, Lapin, along with standard applications a standard spreadsheet program, a relational database program, and a conventional dialog and display program to demonstrate the successful sharing of data among independent programs. Most of the effort beyond that demonstration has been concentrated on the inclusion of more complex display programs. Specifically, a custom-written windowing program organized around dialogs to control the interactions have been combined with an independent CAD program (Open Cascade) that supports sophisticated display of CAD elements such as lines, spline curves, and surfaces and turbine-blade data produced by an independent blade design program (UD0300).

  19. Lapin Data Interchange Among Database, Analysis and Display Programs Using XML-Based Text Files

    NASA Technical Reports Server (NTRS)

    2004-01-01

    The purpose was to investigate and evaluate the interchange of application- specific data among multiple programs each carrying out part of the analysis and design task. This has been carried out previously by creating a custom program to read data produced by one application and then write that data to a file whose format is specific to the second application that needs all or part of that data. In this investigation, data of interest is described using the XML markup language that allows the data to be stored in a text-string. Software to transform output data of a task into an XML-string and software to read an XML string and extract all or a portion of the data needed for another application is used to link two independent applications together as part of an overall design effort. This approach was initially used with a standard analysis program, Lapin, along with standard applications a standard spreadsheet program, a relational database program, and a conventional dialog and display program to demonstrate the successful sharing of data among independent programs. See Engineering Analysis Using a Web-Based Protocol by J.D. Schoeffler and R.W. Claus, NASA TM-2002-211981, October 2002. Most of the effort beyond that demonstration has been concentrated on the inclusion of more complex display programs. Specifically, a custom-written windowing program organized around dialogs to control the interactions have been combined with an independent CAD program (Open Cascade) that supports sophisticated display of CAD elements such as lines, spline curves, and surfaces and turbine-blade data produced by an independent blade design program (UD0300).

  20. Homeland situation awareness through mining and fusing heterogeneous information from intelligence databases and field sensors

    NASA Astrophysics Data System (ADS)

    Digioia, Giusj; Panzieri, Stefano

    2012-06-01

    One of the most felt issues in the defence domain is that of having huge quantities of data stored in databases and acquired from field sensors, without being able to infer information from them. Usually databases are continuously updated with observations, and are related to heterogeneous data. Deep and continuous analysis on data could mine useful correlations, explain relations existing among data and cue searches for further evidences. The solution to the problem addressed before seems to deal both with the domain of Data Mining and with the domain of high level Data Fusion, that is Situation Assessment, Threat Assessment and Process Refinement, also synthesised as Situation Awareness. The focus of this paper is the definition of an architecture for a system adopting data mining techniques to adaptively discover clusters of information and relation among them, to classify observations acquired and to use the model of knowledge and the classification derived in order to assess situations, threats and refine the search for evidences. Sources of information taken into account are those related to the intelligence domain, as IMINT, HUMINT, ELINT, COMINT and other non-conventional sources. The algorithms applied refer to not supervised and supervised classification for rule exploitation, and adaptively built Hidden Markov Model for situation and threat assessment.

  1. New perspectives in toxicological information management, and the role of ISSTOX databases in assessing chemical mutagenicity and carcinogenicity.

    PubMed

    Benigni, Romualdo; Battistelli, Chiara Laura; Bossa, Cecilia; Tcheremenskaia, Olga; Crettaz, Pierre

    2013-07-01

    Currently, the public has access to a variety of databases containing mutagenicity and carcinogenicity data. These resources are crucial for the toxicologists and regulators involved in the risk assessment of chemicals, which necessitates access to all the relevant literature, and the capability to search across toxicity databases using both biological and chemical criteria. Towards the larger goal of screening chemicals for a wide range of toxicity end points of potential interest, publicly available resources across a large spectrum of biological and chemical data space must be effectively harnessed with current and evolving information technologies (i.e. systematised, integrated and mined), if long-term screening and prediction objectives are to be achieved. A key to rapid progress in the field of chemical toxicity databases is that of combining information technology with the chemical structure as identifier of the molecules. This permits an enormous range of operations (e.g. retrieving chemicals or chemical classes, describing the content of databases, finding similar chemicals, crossing biological and chemical interrogations, etc.) that other more classical databases cannot allow. This article describes the progress in the technology of toxicity databases, including the concepts of Chemical Relational Database and Toxicological Standardized Controlled Vocabularies (Ontology). Then it describes the ISSTOX cluster of toxicological databases at the Istituto Superiore di Sanitá. It consists of freely available databases characterised by the use of modern information technologies and by curation of the quality of the biological data. Finally, this article provides examples of analyses and results made possible by ISSTOX.

  2. A database paradigm for the management of DICOM-RT structure sets using a geographic information system

    NASA Astrophysics Data System (ADS)

    Shao, Weber; Kupelian, Patrick A.; Wang, Jason; Low, Daniel A.; Ruan, Dan

    2014-03-01

    We devise a paradigm for representing the DICOM-RT structure sets in a database management system, in such way that secondary calculations of geometric information can be performed quickly from the existing contour definitions. The implementation of this paradigm is achieved using the PostgreSQL database system and the PostGIS extension, a geographic information system commonly used for encoding geographical map data. The proposed paradigm eliminates the overhead of retrieving large data records from the database, as well as the need to implement various numerical and data parsing routines, when additional information related to the geometry of the anatomy is desired.

  3. Adding Hierarchical Objects to Relational Database General-Purpose XML-Based Information Managements

    NASA Technical Reports Server (NTRS)

    Lin, Shu-Chun; Knight, Chris; La, Tracy; Maluf, David; Bell, David; Tran, Khai Peter; Gawdiak, Yuri

    2006-01-01

    NETMARK is a flexible, high-throughput software system for managing, storing, and rapid searching of unstructured and semi-structured documents. NETMARK transforms such documents from their original highly complex, constantly changing, heterogeneous data formats into well-structured, common data formats in using Hypertext Markup Language (HTML) and/or Extensible Markup Language (XML). The software implements an object-relational database system that combines the best practices of the relational model utilizing Structured Query Language (SQL) with those of the object-oriented, semantic database model for creating complex data. In particular, NETMARK takes advantage of the Oracle 8i object-relational database model using physical-address data types for very efficient keyword searches of records across both context and content. NETMARK also supports multiple international standards such as WEBDAV for drag-and-drop file management and SOAP for integrated information management using Web services. The document-organization and -searching capabilities afforded by NETMARK are likely to make this software attractive for use in disciplines as diverse as science, auditing, and law enforcement.

  4. Interdisciplinary Collaboration amongst Colleagues and between Initiatives with the Magnetics Information Consortium (MagIC) Database

    NASA Astrophysics Data System (ADS)

    Minnett, R.; Koppers, A. A. P.; Jarboe, N.; Tauxe, L.; Constable, C.; Jonestrask, L.; Shaar, R.

    2014-12-01

    Earth science grand challenges often require interdisciplinary and geographically distributed scientific collaboration to make significant progress. However, this organic collaboration between researchers, educators, and students only flourishes with the reduction or elimination of technological barriers. The Magnetics Information Consortium (http://earthref.org/MagIC/) is a grass-roots cyberinfrastructure effort envisioned by the geo-, paleo-, and rock magnetic scientific community to archive their wealth of peer-reviewed raw data and interpretations from studies on natural and synthetic samples. MagIC is dedicated to facilitating scientific progress towards several highly multidisciplinary grand challenges and the MagIC Database team is currently beta testing a new MagIC Search Interface and API designed to be flexible enough for the incorporation of large heterogeneous datasets and for horizontal scalability to tens of millions of records and hundreds of requests per second. In an effort to reduce the barriers to effective collaboration, the search interface includes a simplified data model and upload procedure, support for online editing of datasets amongst team members, commenting by reviewers and colleagues, and automated contribution workflows and data retrieval through the API. This web application has been designed to generalize to other databases in MagIC's umbrella website (EarthRef.org) so the Geochemical Earth Reference Model (http://earthref.org/GERM/) portal, Seamount Biogeosciences Network (http://earthref.org/SBN/), EarthRef Digital Archive (http://earthref.org/ERDA/) and EarthRef Reference Database (http://earthref.org/ERR/) will benefit from its development.

  5. A probabilistic NF2 relational algebra for integrated information retrieval and database systems

    SciTech Connect

    Fuhr, N.; Roelleke, T.

    1996-12-31

    The integration of information retrieval (IR) and database systems requires a data model which allows for modelling documents as entities, representing uncertainty and vagueness and performing uncertain inference. For this purpose, we present a probabilistic data model based on relations in non-first-normal-form (NF2). Here, tuples are assigned probabilistic weights giving the probability that a tuple belongs to a relation. Thus, the set of weighted index terms of a document are represented as a probabilistic subrelation. In a similar way, imprecise attribute values are modelled as a set-valued attribute. We redefine the relational operators for this type of relations such that the result of each operator is again a probabilistic NF2 relation, where the weight of a tuple gives the probability that this tuple belongs to the result. By ordering the tuples according to decreasing probabilities, the model yields a ranking of answers like in most IR models. This effect also can be used for typical database queries involving imprecise attribute values as well as for combinations of database and IR queries.

  6. Databases and information integration for the Medicago truncatula genome and transcriptome.

    PubMed

    Cannon, Steven B; Crow, John A; Heuer, Michael L; Wang, Xiaohong; Cannon, Ethalinda K S; Dwan, Christopher; Lamblin, Anne-Francoise; Vasdewani, Jayprakash; Mudge, Joann; Cook, Andrew; Gish, John; Cheung, Foo; Kenton, Steve; Kunau, Timothy M; Brown, Douglas; May, Gregory D; Kim, Dongjin; Cook, Douglas R; Roe, Bruce A; Town, Chris D; Young, Nevin D; Retzel, Ernest F

    2005-05-01

    An international consortium is sequencing the euchromatic genespace of Medicago truncatula. Extensive bioinformatic and database resources support the marker-anchored bacterial artificial chromosome (BAC) sequencing strategy. Existing physical and genetic maps and deep BAC-end sequencing help to guide the sequencing effort, while EST databases provide essential resources for genome annotation as well as transcriptome characterization and microarray design. Finished BAC sequences are joined into overlapping sequence assemblies and undergo an automated annotation process that integrates ab initio predictions with EST, protein, and other recognizable features. Because of the sequencing project's international and collaborative nature, data production, storage, and visualization tools are broadly distributed. This paper describes databases and Web resources for the project, which provide support for physical and genetic maps, genome sequence assembly, gene prediction, and integration of EST data. A central project Web site at medicago.org/genome provides access to genome viewers and other resources project-wide, including an Ensembl implementation at medicago.org, physical map and marker resources at mtgenome.ucdavis.edu, and genome viewers at the University of Oklahoma (www.genome.ou.edu), the Institute for Genomic Research (www.tigr.org), and Munich Information for Protein Sequences Center (mips.gsf.de).

  7. Nationwide incidence of motor neuron disease using the French health insurance information system database.

    PubMed

    Kab, Sofiane; Moisan, Frédéric; Preux, Pierre-Marie; Marin, Benoît; Elbaz, Alexis

    2017-08-01

    There are no estimates of the nationwide incidence of motor neuron disease (MND) in France. We used the French health insurance information system to identify incident MND cases (2012-2014), and compared incidence figures to those from three external sources. We identified incident MND cases (2012-2014) based on three data sources (riluzole claims, hospitalisation records, long-term chronic disease benefits), and computed MND incidence by age, gender, and geographic region. We used French mortality statistics, Limousin ALS registry data, and previous European studies based on administrative databases to perform external comparisons. We identified 6553 MND incident cases. After standardisation to the United States 2010 population, the age/gender-standardised incidence was 2.72/100,000 person-years (males, 3.37; females, 2.17; male:female ratio = 1.53, 95% CI1.46-1.61). There was no major spatial difference in MND distribution. Our data were in agreement with the French death database (standardised mortality ratio = 1.01, 95% CI = 0.96-1.06) and Limousin ALS registry (standardised incidence ratio = 0.92, 95% CI = 0.72-1.15). Incidence estimates were in the same range as those from previous studies. We report French nationwide incidence estimates of MND. Administrative databases including hospital discharge data and riluzole claims offer an interesting approach to identify large population-based samples of patients with MND for epidemiologic studies and surveillance.

  8. Performance of online drug information databases as clinical decision support tools in infectious disease medication management.

    PubMed

    Polen, Hyla H; Zapantis, Antonia; Clauson, Kevin A; Clauson, Kevin Alan; Jebrock, Jennifer; Paris, Mark

    2008-11-06

    Infectious disease (ID) medication management is complex and clinical decision support tools (CDSTs) can provide valuable assistance. This study evaluated scope and completeness of ID drug information found in online databases by evaluating their ability to answer 147 question/answer pairs. Scope scores produced highest rankings (%) for: Micromedex (82.3), Lexi-Comp/American Hospital Formulary Service (81.0), and Medscape Drug Reference (81.0); lowest includes: Epocrates Online Premium (47.0), Johns Hopkins ABX Guide (45.6), and PEPID PDC (40.8).

  9. High-Resolution Spectroscopic Database for the NASA Earth Observing System Program

    NASA Technical Reports Server (NTRS)

    Rothman, Laurence S.; Starr, David (Technical Monitor)

    2002-01-01

    The purpose of this project is to develop and enhance the HITRAN molecular spectroscopic database and associated software to support the observational programs of the Earth Observing System (EOS). In particular, the focus is on the EOS projects: the Atmospheric Infrared Sounder (AIRS), the High-Resolution Dynamics Limb Sounder (HIRDLS), Measurements of Pollution in the Troposphere (MOPITT), the Tropospheric Emission Spectrometer (TES), and the Stratospheric Aerosol and Gas Experiment (SAGE III). The data requirements of these programs in terms of spectroscopy are varied, but usually call for additional spectral parameters or improvements to existing molecular bands. In addition, cross-section data for heavier molecular species must be expanded and made amenable to modeling in remote sensing. The effort in the project also includes developing software and distribution to make access, manipulation, and use of HITRAN functional to the EOS program.

  10. 77 FR 47690 - 30-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-09

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF STATE 30-Day Notice of Proposed Information Collection: Civilian Response Corps Database In-Processing Electronic Form... Database In-Processing Electronic Form. OMB Control Number: 1405-0168. Type of Request: Extension of...

  11. Bolus calculator with nutrition database software, a new concept of prandial insulin programming for pump users.

    PubMed

    Pańkowska, Ewa; Błazik, Marlena

    2010-05-01

    Bolus calculators are effective tools in controlling blood glucose levels in patients treated with insulin. Diabetics is a new software devised for patients to facilitate and improve self-managing for prandial insulin dosing and for better controlling food intake. This device contains two integral parts: a nutrition database and a bolus calculator. The algorithm is based on a formula in which carbohydrate (CHO) and either fat and/or protein (FP) products are engulfed in insulin. The insulin dose setting is programmed individually for CHO in a normal bolus (N-W) and for FP in a square-wave bolus (S-W). The device calculates the dose of insulin for N-W or S-W, suggests the optimal kind of bolus, and indicates the timing in hours for an S-W bolus. In addition, this calculator, which contains a nutrition database and insulin dosing software, helps determine the correct type of necessary boluses for selected foods.

  12. An analysis of Chemical Stockpile Emergency Preparedness Program exercise results. Volume 2: Preliminary evaluation and analysis of CSEPP exercise database

    SciTech Connect

    Wernette, D.; Lerner, K.

    1998-06-01

    This study investigated the quality and usefulness of the information in the Chemical Stockpile Emergency Preparedness Program (CSEPP) exercise database. It incorporates the results of two separate analytical efforts. The first effort investigated the process of assigning standardized codes to issues identified in CSEPP exercise reports. A small group of issues was coded independently by each of several individuals, and the results of the individual codings were compared. Considerable differences were found among the individuals` codings. The second effort consisted of a statistical multivariate analysis, to investigate whether exercise issues are evenly distributed among exercise tabs, sites, and objectives. It was found that certain tabs, sites, and objectives were disproportionately associated with problem areas in exercises. In some cases, these problem areas have persisted over time, but in other cases they have undergone significant shifts over the time span of the investigation. The study concludes that the database can be a useful resource for analyzing problem areas and setting priorities for CSEPP program resources. However, some further analyses should be performed in order to more fully explore the data and increase confidence in the results.

  13. NASA ELV Payload Safety Program Information Exchange

    NASA Technical Reports Server (NTRS)

    Staubus, Cal; Palo, Tom; Dook, Mike; Donovan, Shawn

    2007-01-01

    This presentation details the Expendable Launch Vehicle (ELV) Payload Safety Program in its development and plan for implementation. It is an overview of the program's policies, process and requirements.

  14. 42 CFR 435.905 - Availability of program information.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 42 Public Health 4 2010-10-01 2010-10-01 false Availability of program information. 435.905... SERVICES (CONTINUED) MEDICAL ASSISTANCE PROGRAMS ELIGIBILITY IN THE STATES, DISTRICT OF COLUMBIA, THE... Applications § 435.905 Availability of program information. (a) The agency must furnish the following...

  15. Information systems requirements for the Microgravity Science and Applications Program

    NASA Technical Reports Server (NTRS)

    Kicza, M. E.; Kreer, J. R.

    1991-01-01

    NASA's Microgravity Science and Applications (MSAD) Program is presented. Additionally, the types of information produced wiithin the program and the anticipated growth in information system requirements as the program transitions to Space Station Freedom utilization are discussed. Plans for payload operations support in the Freedom era are addressed, as well as current activities to define research community requirements for data and sample archives.

  16. Information systems requirements for the Microgravity Science and Applications Program

    NASA Technical Reports Server (NTRS)

    Kicza, M. E.; Kreer, J. R.

    1991-01-01

    NASA's Microgravity Science and Applications (MSAD) Program is presented. Additionally, the types of information produced wiithin the program and the anticipated growth in information system requirements as the program transitions to Space Station Freedom utilization are discussed. Plans for payload operations support in the Freedom era are addressed, as well as current activities to define research community requirements for data and sample archives.

  17. Information systems requirements for the microgravity science and applications program

    NASA Technical Reports Server (NTRS)

    Kicza, M. E.; Kreer, J. R.

    1990-01-01

    NASA's Microgravity Science and Applications (MSAD) Program is presented. Additionally, the types of information produced within the program and the anticipated growth in information system requirements as the program transitions to Space Station Freedom utilization are discussed. Plans for payload operations support in the Freedom era are addressed, as well as current activities to define research community requirements for data and sample archives.

  18. Analysis and comparison of information and data recorded in carcinogenicity and genotoxicity databases.

    PubMed Central

    Romano, P; Aresu, O; Parodi, B; Malacarne, D; Castagneto, G; Parodi, S; Ruzzon, T

    1991-01-01

    The Interlab Project is a university-industry joint project recently funded by the Italian government as part of the improvement of the Italian research infrastructure; among its short-term goals are the implementation of data banks of biomedical interest and the spread of informatic tools for biomedical research. Results of both long-term assays of carcinogenicity in rodents and short-term in vitro and in vivo tests of genotoxicity are relevant for a wide body of users, ranging from carcinogenesis research laboratories to industries and governmental agencies. To evaluate the most appropriate ways of spreading information on these experiments, a detailed analysis on information recorded in available databases has been carried out. Furthermore, the contents of the most known databases have been compared, with respect to a specific compound, to evaluate both the overall reliability of these systems, compared to longer and more complex assessments carried out manually starting from bibliographic searches, and the level of concordance among them. PMID:1820252

  19. Hazardous Waste Clean-Up Information (CLU-IN) On-line Characterization and Remediation Databases Fact Sheet

    EPA Pesticide Factsheets

    This fact sheet provides an overview of the 10 on-line characterization and remediation databases available on the Hazardous Waste Clean-Up Information (CLU-IN) website sponsored by the U.S. Environmental Protection Agency.

  20. CECIL: a database for storing and retrieving clinical and molecular information on patients with Alport syndrome.

    PubMed Central

    Nadkarni, P. M.; Reeders, S. T.; Zhou, J.

    1993-01-01

    CECIL is a database that stores clinical and molecular information on patients with Alport syndrome. The clinical component of CECIL is specific to Alport syndrome; the component that stores and manipulates molecular data can be used for any disease caused by a gene mutation, such as cystic fibrosis. While offering the ability to retrieve patient data through compound Boolean queries, CECIL also offers the ability to manipulate sequence information in various ways. In particular, CECIL can perform an augmented sequence alignment of an abnormal (patient) DNA sequence with a reference sequence. CECIL is currently being used by members of the International Alport Syndrome consortium. We describe CECIL's features and discuss the design decisions made in generalizing CECIL's architecture. PMID:8130555

  1. Computational methodologies for compound database searching that utilize experimental protein-ligand interaction information.

    PubMed

    Tan, Lu; Batista, Jose; Bajorath, Jürgen

    2010-09-01

    Ligand- and target structure-based methods are widely used in virtual screening, but there is currently no methodology available that fully integrates these different approaches. Herein, we provide an overview of various attempts that have been made to combine ligand- and structure-based computational screening methods. We then review different types of approaches that utilize protein-ligand interaction information for database screening and filtering. Interaction-based approaches make use of a variety of methodological concepts including pharmacophore modeling and direct or indirect encoding of protein-ligand interactions in fingerprint formats. These interaction-based methods have been successfully applied to tackle different tasks related to virtual screening including postprocessing of docking poses, prioritization of binding modes, selectivity analysis, or similarity searching. Furthermore, we discuss the recently developed interacting fragment approach that indirectly incorporates 3D interaction information into 2D similarity searching and bridges between ligand- and structure-based methods.

  2. The Development of an On-Line, Partially Automated Discharge Summary and Core Clinical Data-Base in an Existing Hospital Information System

    PubMed Central

    Roberts, Mark S.; Zibrak, Joseph D.; Siders, Alice; Zullo, Nan; Peterson, Mark

    1989-01-01

    We describe the development of a hospital-wide computer system that produces on-line, partially automated discharge summaries, assists nursing staff with discharge functions, and stores a core clinical database on all patients. The system was created using only tools and functions contained within the existing order-entry/results reporting hospital information system. Data enters the discharge database in three ways: direct transfer from the information system, on line selection by physicians and nurses of specific data already contained in the system (eg. lab and radiology results), and by typed input of varying amounts of text (eg. chief complaint, hospital course). If completed the night prior to discharge, the system produces several products for residents and nurses, included typed prescriptions, the printed discharge summary, nursing referral or patient care forms, and simple discharge planning information for the patient. During the course of a 9 week pilot program, 428 summaries were completed on the system, 420 of which met JCHAO criteria.

  3. SU-E-T-153: Establish a Comprehensive Patient-Specific Plan QA Database for Instituitional Quality Control Program

    SciTech Connect

    Ding, X; Olszanski, A; Scheuermann, R; Bellerive, M; Solberg, T

    2014-06-01

    Purpose: Since the publication of TG-119, several new treatment techniques requiring new QA devices have been implemented in the clinic. To monitor and analyze our institutional QA performance, we have created a comprehensive QA database using Research Electronic Data Capture (REDCap). The database will also assist us in creating IMRT QA Analysis practice guidelines. Methods: Since Oct. 2013, 336 patient plan QA results were entered into the database. Plan parameters such as plan ID, treatment site, technique, energy, optimization constraints, modulation factor, leaf speed, leaf opening.etc were automatically extracted from the Varian Eclipse database to allow us to refine our evaluation and analysis method. Specific QA device, LINAC-related information, and measurement and analysis results were manually entered by the QA team. IMRT plans were measured using MapCHECK2 while RapidArc plans were measured using ArcCHECK. Distance-To-Agreement 3%/3mm without global maximum normalization was used. Results: The data indicates that different treatment techniques might benefit from a different site-specific action level(AL) depending on the complexity of the plan and optimization parameter used (e.g., breast IMRT QA= 97.8% and pelvis IMRT QA=93.1%). Different QA devices may also benefit from a different AL (MapCHECK2 = 94.1% while ArcCHECK = 83.0%). The relationship between the parameters and passing rate suggests that the complexity of each plan, characterized by leaf travel, leaf opening and modulation factor, affect the passing rate significantly. The database is reviewed regularly, and any abnormal point of the QA result or a trend of lower QA passing rate on a specific LINAC is further investigated. Conclusion: Establishing a comprehensive QA database provides an overview of the quality assurance program. It not only helps in answering the question “what is a reasonable and achievable standard for each institution”, but also saves time in monitoring and

  4. Turning Text into Research Networks: Information Retrieval and Computational Ontologies in the Creation of Scientific Databases

    PubMed Central

    Ceci, Flávio; Pietrobon, Ricardo; Gonçalves, Alexandre Leopoldo

    2012-01-01

    Background Web-based, free-text documents on science and technology have been increasing growing on the web. However, most of these documents are not immediately processable by computers slowing down the acquisition of useful information. Computational ontologies might represent a possible solution by enabling semantically machine readable data sets. But, the process of ontology creation, instantiation and maintenance is still based on manual methodologies and thus time and cost intensive. Method We focused on a large corpus containing information on researchers, research fields, and institutions. We based our strategy on traditional entity recognition, social computing and correlation. We devised a semi automatic approach for the recognition, correlation and extraction of named entities and relations from textual documents which are then used to create, instantiate, and maintain an ontology. Results We present a prototype demonstrating the applicability of the proposed strategy, along with a case study describing how direct and indirect relations can be extracted from academic and professional activities registered in a database of curriculum vitae in free-text format. We present evidence that this system can identify entities to assist in the process of knowledge extraction and representation to support ontology maintenance. We also demonstrate the extraction of relationships among ontology classes and their instances. Conclusion We have demonstrated that our system can be used for the conversion of research information in free text format into database with a semantic structure. Future studies should test this system using the growing number of free-text information available at the institutional and national levels. PMID:22235242

  5. National Carbon Sequestration Database and Geographic Information System (NatCarb)

    SciTech Connect

    Kenneth Nelson; Timothy Carr

    2009-03-31

    This annual and final report describes the results of the multi-year project entitled 'NATional CARBon Sequestration Database and Geographic Information System (NatCarb)' (http://www.natcarb.org). The original project assembled a consortium of five states (Indiana, Illinois, Kansas, Kentucky and Ohio) in the midcontinent of the United States (MIDCARB) to construct an online distributed Relational Database Management System (RDBMS) and Geographic Information System (GIS) covering aspects of carbon dioxide (CO{sub 2}) geologic sequestration. The NatCarb system built on the technology developed in the initial MIDCARB effort. The NatCarb project linked the GIS information of the Regional Carbon Sequestration Partnerships (RCSPs) into a coordinated regional database system consisting of datasets useful to industry, regulators and the public. The project includes access to national databases and GIS layers maintained by the NatCarb group (e.g., brine geochemistry) and publicly accessible servers (e.g., USGS, and Geography Network) into a single system where data are maintained and enhanced at the local level, but are accessed and assembled through a single Web portal to facilitate query, assembly, analysis and display. This project improves the flow of data across servers and increases the amount and quality of available digital data. The purpose of NatCarb is to provide a national view of the carbon capture and storage potential in the U.S. and Canada. The digital spatial database allows users to estimate the amount of CO{sub 2} emitted by sources (such as power plants, refineries and other fossil-fuel-consuming industries) in relation to geologic formations that can provide safe, secure storage sites over long periods of time. The NatCarb project worked to provide all stakeholders with improved online tools for the display and analysis of CO{sub 2} carbon capture and storage data through a single website portal (http://www.natcarb.org/). While the external project is

  6. The Magnetics Information Consortium (MagIC) Online Database: Uploading, Searching and Visualizing Paleomagnetic and Rock Magnetic Data

    NASA Astrophysics Data System (ADS)

    Koppers, A.; Tauxe, L.; Constable, C.; Pisarevsky, S.; Jackson, M.; Solheid, P.; Banerjee, S.; Johnson, C.; Genevey, A.; Delaney, R.; Baker, P.; Sbarbori, E.

    2005-12-01

    The Magnetics Information Consortium (MagIC) operates an online relational database including both rock and paleomagnetic data. The goal of MagIC is to store all measurements and their derived properties for studies of paleomagnetic directions (inclination, declination) and their intensities, and for rock magnetic experiments (hysteresis, remanence, susceptibility, anisotropy). MagIC is hosted under EarthRef.org at http://earthref.org/MAGIC/ and has two search nodes, one for paleomagnetism and one for rock magnetism. These nodes provide basic search capabilities based on location, reference, methods applied, material type and geological age, while allowing the user to drill down from sites all the way to the measurements. At each stage, the data can be saved and, if the available data supports it, the data can be visualized by plotting equal area plots, VGP location maps or typical Zijderveld, hysteresis, FORC, and various magnetization and remanence diagrams. All plots are made in SVG (scalable vector graphics) and thus can be saved and easily read into the user's favorite graphics programs without loss of resolution. User contributions to the MagIC database are critical to achieve a useful research tool. We have developed a standard data and metadata template (version 1.6) that can be used to format and upload all data at the time of publication in Earth Science journals. Software tools are provided to facilitate easy population of these templates within Microsoft Excel. These tools allow for the import/export of text files and they provide advanced functionality to manage/edit the data, and to perform various internal checks to high grade the data and to make them ready for uploading. The uploading is all done online by using the MagIC Contribution Wizard at http://earthref.org/MAGIC/upload.htm that takes only a few minutes to process a contribution of approximately 5,000 data records. After uploading these standardized MagIC template files will be stored in the

  7. Developing an Approach to Prioritize River Restoration using Data Extracted from Flood Risk Information System Databases.

    NASA Astrophysics Data System (ADS)

    Vimal, S.; Tarboton, D. G.; Band, L. E.; Duncan, J. M.; Lovette, J. P.; Corzo, G.; Miles, B.

    2015-12-01

    Prioritizing river restoration requires information on river geometry. In many states in the US detailed river geometry has been collected for floodplain mapping and is available in Flood Risk Information Systems (FRIS). In particular, North Carolina has, for its 100 Counties, developed a database of numerous HEC-RAS models which are available through its Flood Risk Information System (FRIS). These models that include over 260 variables were developed and updated by numerous contractors. They contain detailed surveyed or LiDAR derived cross-sections and modeled flood extents for different extreme event return periods. In this work, over 4700 HEC-RAS models' data was integrated and upscaled to utilize detailed cross-section information and 100-year modelled flood extent information to enable river restoration prioritization for the entire state of North Carolina. We developed procedures to extract geomorphic properties such as entrenchment ratio, incision ratio, etc. from these models. Entrenchment ratio quantifies the vertical containment of rivers and thereby their vulnerability to flooding and incision ratio quantifies the depth per unit width. A map of entrenchment ratio for the whole state was derived by linking these model results to a geodatabase. A ranking of highly entrenched counties enabling prioritization for flood allowance and mitigation was obtained. The results were shared through HydroShare and web maps developed for their visualization using Google Maps Engine API.

  8. Illuminating the Depths of the MagIC (Magnetics Information Consortium) Database

    NASA Astrophysics Data System (ADS)

    Koppers, A. A. P.; Minnett, R.; Jarboe, N.; Jonestrask, L.; Tauxe, L.; Constable, C.

    2015-12-01

    The Magnetics Information Consortium (http://earthref.org/MagIC/) is a grass-roots cyberinfrastructure effort envisioned by the paleo-, geo-, and rock magnetic scientific community. Its mission is to archive their wealth of peer-reviewed raw data and interpretations from magnetics studies on natural and synthetic samples. Many of these valuable data are legacy datasets that were never published in their entirety, some resided in other databases that are no longer maintained, and others were never digitized from the field notebooks and lab work. Due to the volume of data collected, most studies, modern and legacy, only publish the interpreted results and, occasionally, a subset of the raw data. MagIC is making an extraordinary effort to archive these data in a single data model, including the raw instrument measurements if possible. This facilitates the reproducibility of the interpretations, the re-interpretation of the raw data as the community introduces new techniques, and the compilation of heterogeneous datasets that are otherwise distributed across multiple formats and physical locations. MagIC has developed tools to assist the scientific community in many stages of their workflow. Contributors easily share studies (in a private mode if so desired) in the MagIC Database with colleagues and reviewers prior to publication, publish the data online after the study is peer reviewed, and visualize their data in the context of the rest of the contributions to the MagIC Database. From organizing their data in the MagIC Data Model with an online editable spreadsheet, to validating the integrity of the dataset with automated plots and statistics, MagIC is continually lowering the barriers to transforming dark data into transparent and reproducible datasets. Additionally, this web application generalizes to other databases in MagIC's umbrella website (EarthRef.org) so that the Geochemical Earth Reference Model (http://earthref.org/GERM/) portal, Seamount Biogeosciences

  9. Wind Energy Program: Information Dissemination and Outreach Final Report

    SciTech Connect

    Bradley G. Stevens, P.E.; Troy K. Simonsen

    2003-07-15

    OAK B188 This project was funded by the U.S. Department of Energy (DOE) under the Office of Energy Efficiency and Renewable Energy's Fiscal Year 2000 Broad-Based Solicitation on Information Dissemination and Outreach--Program Area of Interest 1A. The project was initiated with a kickoff meeting on August 30, 2000, at the National Renewal Energy Laboratory (NREL) facility in Golden, Colorado. Energy and Environmental Research Center (EERC) personnel met with DOE and NREL representatives to review project objectives and participant goals. As proposed, the goal of the DOE-funded program was to develop a center of excellence for wind energy focused on the central and northern Great Plains region, which later became known as the Plains Organization for Wind Energy Resources (POWER). The POWER focus area was originally defined as North Dakota, Minnesota, South Dakota, and Iowa, but soon expanded to also include Kansas, Montana, Nebraska, and Oklahoma. Although this definition of the POWER region is not rigid, it does represent most of the primary wind resource states. All of these, except for Iowa and Minnesota, have had lesser wind energy development than other parts of the country. Under this Cooperative Agreement, the POWER Program established a regional wind energy center, providing objective educational, technical, and partnership-building resources for developing the vast wind resources in the central and northern Great Plains region. POWER activities were performed under the following task structure: Task 1--Internet Web Site/Database Development Task 2--Resource Assessment Task 3--Education and Workshops Task 4--Training Task 5--Development and Demonstration of Wind Technologies

  10. 76 FR 42536 - Real-Time System Management Information Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-19

    ... Federal Highway Administration 23 CFR Part 511 RIN 2125-AF19 Real-Time System Management Information... additional comments relating to the costs and benefits of the Real-Time System Management Information Program... System Management Information Program on November 8, 2010, at 75 FR 68418. The final rule document...

  11. 7 CFR 1493.30 - Information required for program participation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS CCC EXPORT CREDIT GUARANTEE PROGRAMS CCC Export Credit Guarantee Program (GSM-102) and CCC Intermediate Export Credit Guarantee Program (GSM-103) Operations § 1493.30 Information required for program participation. Before CCC...

  12. 7 CFR 1493.30 - Information required for program participation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... CREDIT CORPORATION, DEPARTMENT OF AGRICULTURE LOANS, PURCHASES, AND OTHER OPERATIONS CCC EXPORT CREDIT GUARANTEE PROGRAMS CCC Export Credit Guarantee Program (GSM-102) and CCC Intermediate Export Credit Guarantee Program (GSM-103) Operations § 1493.30 Information required for program participation. Before CCC...

  13. 75 FR 34093 - Information Collection; General Program Administration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-16

    ... Farm Service Agency Information Collection; General Program Administration AGENCY: Farm Service Agency... General Program Administration. DATES: We will consider comments that we receive by August 16, 2010...: Farm Loan Programs--General Program Administration (7 CFR part 761). OMB Number: 0560-0238....

  14. Decontamination Systems Information and Reseach Program

    SciTech Connect

    Cook, Echol E

    1998-04-01

    The following paragraphs comprise the research efforts during the first quarter of 1998 (January 1 - March 31). These tasks have been granted a continuation from the 1997 work and will all end in June 1998. This report represents the last technical quarterly report deliverable for the WVU Cooperative Agreement - Decontamination Systems Information and Research Program. Final reports for all of the 1997 projects will be submitted afterwards as one document. During this period, groundwater extraction operations were completed on Task 1.6 - Pilot Scale Demonstration of TCE Flushing Through PVDs at the DOE/RMI Extrusion Plant. The data have been evaluated and graphs are presented. The plot of TCE Concentration versus Time shows that the up-gradient groundwater monitoring well produced consistent levels of TCE contamination. A similar trend was observed for the down-gradient wells via grab samples tested. Groundwater samples from the PVD test pad Zone of Influence showed consistent reductions in TCE concentrations with respect to time. In addition, a natural pulse frequency is evident which will have a significant impact on the efficiency of the contaminant removal under natural groundwater advection/diffusion processes. The relationships between the PVD Extraction Flow Rate versus Cumulative Time shows a clear trend in flow rate. Consistent values between 20 to 30 g.p.m. at the beginning of the extraction duration, to less than 10 g.p.m. by the end of the extraction cycle are observed. As evidenced by the aquifer's diminishing recharge levels, the PVD extraction is affecting the response of the aquifer's natural attenuation capability. Progress was also marked on the Injection and Circulation of Potable Water Through PVDs task. Data reduction from this sequence of testing is ongoing. Work planned for next quarter includes completing the Injection / Extraction of potable water task and beginning the Surfactant Injection and removal task.

  15. ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.

    PubMed

    Kossenkov, Andrew; Manion, Frank J; Korotkov, Eugene; Moloshok, Thomas D; Ochs, Michael F

    2003-03-22

    The automated sequence annotation pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible resources and maintenance of a local database. The system allows easy use of the output from one search as the input for a new search, as well as the filtering of results. The database is used to store formats and parameters and information for parsing data from web sites. The database permits easy updating of format information should a site modify the format of a query or of a returned web page.

  16. Basic Information about the Indoor Air Quality Tribal Partners Program

    EPA Pesticide Factsheets

    IAQ Tribal Partners Program. This website aims to further empower champions of healthy IAQ in tribal communities with tools for networking, sharing programs and practices, and by serving as a reservoir of the best available tribal-specific IAQ information.

  17. A Comparison of Baccalaureate Programs in Information Technology with Baccalaureate Programs in Computer Science and Information Systems

    ERIC Educational Resources Information Center

    Reichgelt, Han; Lunt, Barry; Ashford, Tina; Phelps, Andy; Slazinski, Erick; Willis, Cheryl

    2004-01-01

    A number of universities have recently started to add baccalaureate programs in Information Technology (IT) to their existing programs in Computer Science (CS) and (Management) Information Systems (IS). While some have welcomed this development, others have argued that (a) there are significant differences between the baccalaureate programs in IT…

  18. A Comparison of Baccalaureate Programs in Information Technology with Baccalaureate Programs in Computer Science and Information Systems

    ERIC Educational Resources Information Center

    Reichgelt, Han; Lunt, Barry; Ashford, Tina; Phelps, Andy; Slazinski, Erick; Willis, Cheryl

    2004-01-01

    A number of universities have recently started to add baccalaureate programs in Information Technology (IT) to their existing programs in Computer Science (CS) and (Management) Information Systems (IS). While some have welcomed this development, others have argued that (a) there are significant differences between the baccalaureate programs in IT…

  19. Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence database.

    PubMed Central

    Billoud, B; Kontic, M; Viari, A

    1996-01-01

    At the DNA/RNA level, biological signals are defined by a combination of spatial structures and sequence motifs. Until now, few attempts had been made in writing general purpose search programs that take into account both sequence and structure criteria. Indeed, the most successful structure scanning programs are usually dedicated to particular structures and are written using general purpose programming languages through a complex and time consuming process where the biological problem of defining the structure and the computer engineering problem of looking for it are intimately intertwined. In this paper, we describe a general representation of structures, suitable for database scanning, together with a programming language, Palingol, designed to manipulate it. Palingol has specific data types, corresponding to structural elements-basically helices-that can be arranged in any way to form a complex structure. As a consequence of the declarative approach used in Palingol, the user should only focus on 'what to search for' while the language engine takes care of 'how to look for it'. Therefore, it becomes simpler to write a scanning program and the structural constraints that define the required structure are more clearly identified. PMID:8628670

  20. Studying Turbulence Using Numerical Simulation Databases. 5: Proceedings of the 1994 Summer Program

    NASA Technical Reports Server (NTRS)

    1994-01-01

    Direct numerical simulation databases were used to study turbulence physics and modeling issues at the fifth Summer Program of the Center for Turbulence Research. The largest group, comprising more than half of the participants, was the Turbulent Reacting Flows and Combustion group. The remaining participants were in three groups: Fundamentals, Modeling & LES, and Rotating Turbulence. For the first time in the CTR Summer Programs, participants included engineers from the U.S. aerospace industry. They were exposed to a variety of problems involving turbulence, and were able to incorporate the models developed at CTR in their company codes. They were exposed to new ideas on turbulence prediction, methods which already appear to have had an impact on their capabilities at their laboratories. Such interactions among the practitioners in the government, academia, and industry are the most meaningful way of transferring technology.

  1. Maryland power plant siting program radioecology database management system: format for coding radioecology data. Final report

    SciTech Connect

    Domotor, S.L.

    1986-01-01

    The Radioecology Laboratory of the State of Maryland Power Plant Siting Program (PPSP) conducts routine radiological monitoring programs designed to assess the environmental impact of radionuclides released by nuclear power plants affecting Maryland. The PPSP radioecology database management system was initiated to store existing and future monitoring data collected by PPSP and its subcontractors in a computer file format. From these files, SAS (Statistical Analysis System) datasets are created for qualitative and quantitative analysis of monitoring data, for modeling studies through incorporation of this data, or for predicting environmental impact. The system was designed to accommodate both gamma and beta radionuclide analyses from water, sediment, soil, air, foodstuff, and aquatic and terrestrial flora and fauna sample types. Plant releases of radionuclides and physical and chemical environmental parameters can also be stored.

  2. InvFEST, a database integrating information of polymorphic inversions in the human genome.

    PubMed

    Martínez-Fundichely, Alexander; Casillas, Sònia; Egea, Raquel; Ràmia, Miquel; Barbadilla, Antonio; Pantano, Lorena; Puig, Marta; Cáceres, Mario

    2014-01-01

    The newest genomic advances have uncovered an unprecedented degree of structural variation throughout genomes, with great amounts of data accumulating rapidly. Here we introduce InvFEST (http://invfestdb.uab.cat), a database combining multiple sources of information to generate a complete catalogue of non-redundant human polymorphic inversions. Due to the complexity of this type of changes and the underlying high false-positive discovery rate, it is necessary to integrate all the available data to get a reliable estimate of the real number of inversions. InvFEST automatically merges predictions into different inversions, refines the breakpoint locations, and finds associations with genes and segmental duplications. In addition, it includes data on experimental validation, population frequency, functional effects and evolutionary history. All this information is readily accessible through a complete and user-friendly web report for each inversion. In its current version, InvFEST combines information from 34 different studies and contains 1092 candidate inversions, which are categorized based on internal scores and manual curation. Therefore, InvFEST aims to represent the most reliable set of human inversions and become a central repository to share information, guide future studies and contribute to the analysis of the functional and evolutionary impact of inversions on the human genome.

  3. A HANDBOOK OF PROGRAMED LEARNING INFORMATION.

    ERIC Educational Resources Information Center

    RYAN, WILLIAM F.

    A HANDBOOK TO GUIDE AND DIRECT EDUCATORS IN NEW YORK STATE IN UNDERSTANDING, SELECTING, UTILIZING, AND EVALUATING TEACHING MACHINES AND PROGRAMED LEARNING MATERIALS IS PRESENTED. THE FOLLOWING AREAS ARE INCLUDED--(1) ADMINISTRATION, GUIDELINES FOR THE ADMINISTRATION IN ACHIEVING THE GOAL OF EFFECTIVE, MEANINGFUL USE OF PROGRAMED INSTRUCTION, (2)…

  4. The Political Economy Program: An Informal Guide.

    ERIC Educational Resources Information Center

    1979

    The political economy program at Williams College is described. This program is a joint major drawing upon the political science and economics departments and is designed to give those who enter public service, business or law a grasp of the governmental and economic environment within which they will have to operate. It also may give those who…

  5. Hinterbrand Lodge Outdoor Education Center. Program Information.

    ERIC Educational Resources Information Center

    Dependents Schools (DOD), Washington, DC. European Area.

    Describing Department of Defense Dependents Schools Europe (DODDSEUR) use of Hinterbrand Lodge Outdoor Education Center, this document is directed to sponsors wishing to take groups to Hinterbrand for one or more of the five program options (outdoor education week, teacher weekend, school-designed outdoor education program, administrative faculty…

  6. AIDS Information in Children's Television Programs.

    ERIC Educational Resources Information Center

    Netzhammer, Emile C.

    A study analyzed the potential rhetorical impact of AIDS-related television programming directed at preadolescents. The four programs selected for the study were all submitted in the children's television category of the Peabody Awards competition for the 1987-1988 season. They are (1) an episode of the PBS children's documentary series…

  7. National Geochemical Database reformatted data from the National Uranium Resource Evaluation (NURE) Hydrogeochemical and Stream Sediment Reconnaissance (HSSR) program

    USGS Publications Warehouse

    Smith, Steven M.

    1997-01-01

    The National Uranium Resource Evaluation (NURE) Hydrogeochemical and Stream Sediment Reconnaissance (HSSR) program produced a large amount of geochemical data. To fully understand how these data were generated, it is recommended that you read the History of NURE HSSR Program for a summary of the entire program. By the time the NURE program had ended, the HSSR data consisted of 894 separate data files stored with 47 different formats. Many files contained duplication of data found in other files. The University of Oklahoma's Information Systems Programs of the Energy Resources Institute (ISP) was contracted by the Department of Energy to enhance the accessibility and usefulness of the NURE HSSR data. ISP created a single standard-format master file to replace the 894 original files. ISP converted 817 of the 894 original files before its funding apparently ran out. The ISP-reformatted NURE data files have been released by the USGS on CD-ROM (Lower 48 States, Hoffman and Buttleman, 1994; Alaska, Hoffman and Buttleman, 1996). A description of each NURE database field, derived from a draft NURE HSSR data format manual (unpubl. commun., Stan Moll, ISP, Oct 7, 1988), was included in a readme file on each CD-ROM. That original manual was incomplete and assumed that the reformatting process had gone to completion. A lot of vital information was not included. Efforts to correct that manual and the NURE data revealed a large number of problems and missing data. As a result of the frustrating process of cleaning and re-cleaning data from the ISP-reformatted NURE files, a new NURE HSSR data format was developed. This work represents a totally new attempt to reformat the original NURE files into 2 consistent database structures; one for water samples and a second for sediment samples, on a quadrangle by quadrangle basis, from the original NURE files. Although this USGS-reformatted NURE HSSR data format is different than that created by the ISP, many of their ideas were

  8. Decontamination Systems Information and Research Program

    SciTech Connect

    Cook, Echol E; Beatty, Tia Maria

    1998-07-01

    The following paragraphs comprise the research efforts during the second quarter of 1998 (April 1 - June 30.) These tasks have been granted a continuation until the end of August 1998. This report represents the last technical quarterly report deliverable for the WVU Cooperative Agreement - Decontamination Systems Information and Research Program. Final draft technical reports will be the next submission. During this period, work was completed on the Injection and Circulation of Potable Water Through PVDs on Task 1.6 - Pilot Scale Demonstration of TCE Flushing Through PVDs at the DOE/RMI Extrusion Plant. The data has been evaluated and representative graphs are presented. The plot of Cumulative Injected Volume vs. Cumulative Week Time show the ability to consistently inject through the two center PVDs at a rate of approximately ten (10) gallons per hour. This injection rate was achieved under a static head that varied from five (5) feet to three (3) feet. The plot of Extracted Flow Rate vs. Cumulative Week Time compares the extraction rate with and without the injection of water. The injection operation was continuous for eight hour periods while the extraction operation was executed over a pulsing schedule. Extraction rates as high as forty-five (45) gallons per hour were achieved in conjunction with injection (a 350% increase over no injection.) The retrieved TCE in the liquid phase varied to a considerable degree depending on the pulsing scheme, indicating a significant amount of stripping (volatilization) took place during the extraction process. A field experiment was conducted to confirm this. A liquid sample was obtained using the same vacuum system used in the pad operation and a second liquid sample was taken by a bailer. Analyzation of TCE concentration showed 99.5% volatilization when the vacuum system was used for extraction. This was also confirmed by data from the air monitoring program which indicated that 92%-99% of the retrieved TCE was being

  9. NASA scientific and technical information program multimedia initiative

    NASA Technical Reports Server (NTRS)

    Cotter, Gladys A.; Kaye, Karen

    1993-01-01

    This paper relates the experiences of the NASA Scientific and Technical Information Program in introducing multimedia within the STI Program framework. A discussion of multimedia technology is included to provide context for the STI Program effort. The STI Program's Multimedia Initiative is discussed in detail. Parallels and differences between multimedia and traditional information systems project development are highlighted. Challenges faced by the program in initiating its multimedia project are summarized along with lessons learned. The paper concludes with a synopsis of the benefits the program hopes to provide its users through the introduction of multimedia illustrated by examples of successful multimedia projects.

  10. Evolution of grid-wide access to database resident information in ATLAS using Frontier

    NASA Astrophysics Data System (ADS)

    Barberis, D.; Bujor, F.; de Stefano, J.; Dewhurst, A. L.; Dykstra, D.; Front, D.; Gallas, E.; Gamboa, C. F.; Luehring, F.; Walker, R.

    2012-12-01

    The ATLAS experiment deployed Frontier technology worldwide during the initial year of LHC collision data taking to enable user analysis jobs running on the Worldwide LHC Computing Grid to access database resident data. Since that time, the deployment model has evolved to optimize resources, improve performance, and streamline maintenance of Frontier and related infrastructure. In this presentation we focus on the specific changes in the deployment and improvements undertaken, such as the optimization of cache and launchpad location, the use of RPMs for more uniform deployment of underlying Frontier related components, improvements in monitoring, optimization of fail-over, and an increasing use of a centrally managed database containing site specific information (for configuration of services and monitoring). In addition, analysis of Frontier logs has allowed us a deeper understanding of problematic queries and understanding of use cases. Use of the system has grown beyond user analysis and subsystem specific tasks such as calibration and alignment, extending into production processing areas, such as initial reconstruction and trigger reprocessing. With a more robust and tuned system, we are better equipped to satisfy the still growing number of diverse clients and the demands of increasingly sophisticated processing and analysis.

  11. Biological Database of Images and Genomes: tools for community annotations linking image and genomic information

    PubMed Central

    Oberlin, Andrew T; Jurkovic, Dominika A; Balish, Mitchell F; Friedberg, Iddo

    2013-01-01

    Genomic data and biomedical imaging data are undergoing exponential growth. However, our understanding of the phenotype–genotype connection linking the two types of data is lagging behind. While there are many types of software that enable the manipulation and analysis of image data and genomic data as separate entities, there is no framework established for linking the two. We present a generic set of software tools, BioDIG, that allows linking of image data to genomic data. BioDIG tools can be applied to a wide range of research problems that require linking images to genomes. BioDIG features the following: rapid construction of web-based workbenches, community-based annotation, user management and web services. By using BioDIG to create websites, researchers and curators can rapidly annotate a large number of images with genomic information. Here we present the BioDIG software tools that include an image module, a genome module and a user management module. We also introduce a BioDIG-based website, MyDIG, which is being used to annotate images of mycoplasmas. Database URL: BioDIG website: http://biodig.org BioDIG source code repository: http://github.com/FriedbergLab/BioDIG The MyDIG database: http://mydig.biodig.org/ PMID:23550062

  12. A decision support database for nurse care planning as part of a hospital information system.

    PubMed

    Newton, C

    1995-01-01

    This paper, based on a doctoral thesis, describes the development and evaluation of a computerized care planning database at the Royal Hampshire County Hospital. It is part of an integrated Hospital Information System, the first to be installed in an United Kingdom. The research examines nurses' attitudes to the Nursing Process to the new care planning system before, three months after, and one year after its implementation. The quality of manual vs. computer care planning is compared in the same time periods using an existing quality assurance instrument and an audit tool, developed during the research. All data was analyzed in each time period in a framework of personal and organizational change theories. The proactive nature of the research allowed findings to be used as a basis for modifications during the process, which culminated in a further project to provide a database of standard based care plans. Results showed that an understanding of the Nursing Process was inadequate and that most nurses were ambivalent about paper care planning and the proposed computer care plans. Three months after implementation, attitudes became more unfavorable; however, after a year, attitudes showed a significant shift towards the positive pole. Conversely, the overall quality-of-care planning improved significantly.

  13. GreekLex 2: A comprehensive lexical database with part-of-speech, syllabic, phonological, and stress information.

    PubMed

    Kyparissiadis, Antonios; van Heuven, Walter J B; Pitchford, Nicola J; Ledgeway, Timothy

    2017-01-01

    Databases containing lexical properties on any given orthography are crucial for psycholinguistic research. In the last ten years, a number of lexical databases have been developed for Greek. However, these lack important part-of-speech information. Furthermore, the need for alternative procedures for calculating syllabic measurements and stress information, as well as combination of several metrics to investigate linguistic properties of the Greek language are highlighted. To address these issues, we present a new extensive lexical database of Modern Greek (GreekLex 2) with part-of-speech information for each word and accurate syllabification and orthographic information predictive of stress, as well as several measurements of word similarity and phonetic information. The addition of detailed statistical information about Greek part-of-speech, syllabification, and stress neighbourhood allowed novel analyses of stress distribution within different grammatical categories and syllabic lengths to be carried out. Results showed that the statistical preponderance of stress position on the pre-final syllable that is reported for Greek language is dependent upon grammatical category. Additionally, analyses showed that a proportion higher than 90% of the tokens in the database would be stressed correctly solely by relying on stress neighbourhood information. The database and the scripts for orthographic and phonological syllabification as well as phonetic transcription are available at http://www.psychology.nottingham.ac.uk/greeklex/.

  14. GreekLex 2: A comprehensive lexical database with part-of-speech, syllabic, phonological, and stress information

    PubMed Central

    van Heuven, Walter J. B.; Pitchford, Nicola J.; Ledgeway, Timothy

    2017-01-01

    Databases containing lexical properties on any given orthography are crucial for psycholinguistic research. In the last ten years, a number of lexical databases have been developed for Greek. However, these lack important part-of-speech information. Furthermore, the need for alternative procedures for calculating syllabic measurements and stress information, as well as combination of several metrics to investigate linguistic properties of the Greek language are highlighted. To address these issues, we present a new extensive lexical database of Modern Greek (GreekLex 2) with part-of-speech information for each word and accurate syllabification and orthographic information predictive of stress, as well as several measurements of word similarity and phonetic information. The addition of detailed statistical information about Greek part-of-speech, syllabification, and stress neighbourhood allowed novel analyses of stress distribution within different grammatical categories and syllabic lengths to be carried out. Results showed that the statistical preponderance of stress position on the pre-final syllable that is reported for Greek language is dependent upon grammatical category. Additionally, analyses showed that a proportion higher than 90% of the tokens in the database would be stressed correctly solely by relying on stress neighbourhood information. The database and the scripts for orthographic and phonological syllabification as well as phonetic transcription are available at http://www.psychology.nottingham.ac.uk/greeklex/. PMID:28231303

  15. Multi Wave Link: An interactive database for co-ordination of multiwavelength programs

    NASA Technical Reports Server (NTRS)

    Cordova, France

    1993-01-01

    Multi Wave Link is an operational database used by the international astronomical community to plan and coordinate multiwavelength observational campaigns on various celestial objects. This facility has been and continues to be an essential tool for the organization of numerous simultaneous ground-based and satellite observations. The Multi Wave Link system has both an interactive component and an electronic mail alert notice component. The interactive portion contains a database of schedules from several of the world's larger observatories and orbiting satellites. Lists of observers, observatories, and their available instrumentation are additionally contained in the system. Another feature added to the software allows the user to search the Royal Greenwich Observatory e-mail listing of international astronomers. This capability is often used by astronomers to find the electronic address of colleagues for improved communication. However, the most productive aspect of the Multi Wave Link system appears to be one of the simplest parts of the system: the electronic mail alert notices for observing campaigns. Information useful in planning the structure of future astronomical databases can be obtained by studying patterns of use of the Multi Wave Link system. This paper analyzes 22 months of Multi Wave Link usage from Sep. 1991 - Jul. 1993.

  16. 76 FR 314 - Sorghum Promotion, Research, and Information Program: Referendum

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-04

    ... Agricultural Marketing Service Sorghum Promotion, Research, and Information Program: Referendum AGENCY: Agricultural Marketing Service, USDA. ACTION: Notice of Opportunity to Participate in the Sorghum Promotion... Promotion, Research, and Information Order (Order), as authorized under the Commodity Promotion,...

  17. 76 FR 59422 - Proposed Information Collection; Horseshoe Crab Tagging Program

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-26

    ... Fish and Wildlife Service Proposed Information Collection; Horseshoe Crab Tagging Program AGENCY: Fish... (telephone). SUPPLEMENTARY INFORMATION: I. Abstract Horseshoe crabs play a vital role commercially, biomedically, and ecologically along the Atlantic coast. Horseshoe crabs are commercially harvested and used as...

  18. 7 CFR 272.5 - Program informational activities.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... materials and speak with food stamp recipients. (3) Rights and responsibilities. State agencies shall inform... households. At their option State agencies may carry out and claim associated costs for Program informational...

  19. Access to Japanese aerospace-related scientific and technical information: The NASA Aerospace Database

    NASA Technical Reports Server (NTRS)

    Hoetker, Glenn P.; Lahr, Thomas F.

    1993-01-01

    With Japan's growing R&D strength in aerospace-related fields, it is increasingly important for U.S. researchers to be aware of Japanese advances. However, several factors make it difficult to do so. After reviewing the diffusion of aerospace STI in Japan, four factors which make it difficult for U.S. researchers to gather this information are discussed: language, the human network, information scatter, and document acquisition. NASA activities to alleviate these difficulties are described, beginning with a general overview of the NASA STI Program. The effects of the new National Level Agreement between NASA and NASDA are discussed.

  20. Database of Industrial Technological Information in Kanagawa : Networks for Technology Activities

    NASA Astrophysics Data System (ADS)

    Saito, Akira; Shindo, Tadashi

    This system is one of the databases which require participation by its members and of which premise is to open all the data in it. Aiming at free technological cooperation and exchange among industries it was constructed by Kanagawa Prefecture in collaboration with enterprises located in it. The input data is 36 items such as major product, special and advantageous technology, technolagy to be wanted for cooperation, facility and equipment, which technologically characterize each enterprise. They are expressed in 2,000 characters and written by natural language including Kanji except for some coded items. 24 search items are accessed by natural language so that in addition to interactive searching procedures including menu-type it enables extensive searching. The information service started in Oct., 1986 covering data from 2,000 enterprisen.