Lee, Hyung Chul; Cho, Hana; Kim, Yoon Ki
2008-05-16
Nonsense-mediated mRNA decay (NMD) is the best-characterized mRNA surveillance mechanism; this process removes faulty mRNAs harboring premature termination codons (PTCs). NMD targets newly synthesized mRNAs bound by nuclear cap-binding proteins 80/20 (CBP80/20) and exon junction complex (EJC), the former of which is thought to recruit the ribosome to initiate the pioneer round of translation. After completion of the pioneer round of translation, CBP80/20 is replaced by the cytoplasmic cap-binding protein eIF4E, which mediates steady-state translation in the cytoplasm. Here, we show that overexpression of eIF4E-T preferentially inhibits cap-dependent steady-state translation, but not the pioneer round of translation. We also demonstrate that overexpression of eIF4E-T or Dcp1a triggers the movement of eIF4E into the processing bodies. These results suggest that the pioneer round of translation differs from steady-state translation in terms of ribosome recruitment.
Steady-state inhibition model for the biodegradation of sulfonated amines in a packed bed reactor.
Juárez-Ramírez, Cleotilde; Galíndez-Mayer, Juvencio; Ruiz-Ordaz, Nora; Ramos-Monroy, Oswaldo; Santoyo-Tepole, Fortunata; Poggi-Varaldo, Héctor
2015-05-25
Aromatic amines are important industrial products having in their molecular structure one or more aromatic rings. These are used as precursors for the synthesis of dyes, adhesives, pesticides, rubber, fertilizers and surfactants. The aromatic amines are common constituents of industrial effluents, generated mostly by the degradation of azo dyes. Several of them are a threat to human health because they can by toxic, allergenic, mutagenic or carcinogenic. The most common are benzenesulfonic amines, such as 4-ABS (4-aminobenzene sulfonic acid) and naphthalene sulfonic amines, such as 4-ANS (4-amino naphthalene sulfonic acid). Sometimes, the mixtures of toxic compounds are more toxic or inhibitory than the individual compounds, even for microorganisms capable of degrading them. Therefore, the aim of this study was to evaluate the degradation of the mixture 4-ANS plus 4-ABS by a bacterial community immobilized in fragments of volcanic stone, using a packed bed continuous reactor. In this reactor, the amines loading rates were varied from 5.5 up to 69 mg L(-1) h(-1). The removal of the amines was determined by high-performance liquid chromatography and chemical oxygen demand. With this information, we have studied the substrate inhibition of the removal rate of the aromatic amines during the degradation of the mixture of sulfonated aromatic amines by the immobilized microorganisms. Experimental results were fitted to parabolic, hyperbolic and linear inhibition models. The model that best characterizes the inhibition of the specific degradation rate in the biofilm reactor was a parabolic model with values of RXM=58.15±7.95 mg (10(9) cells h)(-1), Ks=0.73±0.31 mg L(-1), Sm=89.14±5.43 mg L(-1) and the exponent m=5. From the microbial community obtained, six cultivable bacterial strains were isolated and identified by sequencing their 16S rDNA genes. The strains belong to the genera Variovorax, Pseudomonas, Bacillus, Arthrobacter, Nocardioides and Microbacterium. This
Duarte, Américo G; Cordas, Cristina M; Moura, José J G; Moura, Isabel
2014-03-01
Nitric oxide reductase (NOR) from denitrifying bacteria is an integral membrane protein that catalyses the two electron reduction of NO to N2O, as part of the denitrification process, being responsible for an exclusive reaction, the NN bond formation, the key step of this metabolic pathway. Additionally, this class of enzymes also presents residual oxidoreductase activity, reducing O2 to H2O in a four electron/proton reaction. In this work we report, for the first time, steady-state kinetics with the Pseudomonas nautica NOR, either in the presence of its physiological electron donor (cyt. c552) or immobilised on a graphite electrode surface, in the presence of its known substrates, namely NO or O2. The obtained results show that the enzyme has high affinity for its natural substrate, NO, and different kinetic profiles according to the electron donor used. The kinetic data, as shown by the pH dependence, is modelled by ionisable amino acid residues nearby the di-nuclear catalytic site. The catalytic mechanism is revised and a mononitrosyl-non-heme Fe complex (FeB(II)-NO) species is favoured as the first catalytic intermediate involved on the NO reduction.
Steady state thermal radiometers
NASA Technical Reports Server (NTRS)
Loose, J. D. (Inventor)
1974-01-01
A radiometer is described operating in a vacuum under steady state conditions. The front element is an aluminum sheet painted on the outer side with black or other absorptive material of selected characteristics. A thermocouple is bonded to the inner side of the aluminum sheet. That is backed by highly insulative layers of glass fiber and crinkled, aluminized Mylar polyester. Those layers are backed with a sturdy, polyester sheet, and the entire lamination is laced together by nylon cords. The device is highly reliable in that it does not drift out of calibration, and is significantly inexpensive.
Edgar, J. Christopher; Fisk, Charles L.; Liu, Song; Pandey, Juhi; Herrington, John D.; Schultz, Robert T.; Roberts, Timothy P.L.
2015-01-01
Background Gamma (~30 to 80 Hz) brain rhythms are thought to be abnormal in neurodevelopmental disorders such as schizophrenia (SZ) and autism spectrum disorder (ASD). In adult populations, auditory 40 Hz click trains or 40 Hz amplitude-modulated tones are used to assess the integrity of superior temporal gyrus (STG) 40 Hz gamma-band circuits. As STG 40 Hz auditory steady-state responses (ASSRs) are not fully developed in children, tasks using these stimuli may not be optimal in younger patient populations. The present study examined this issue in typically developing (TD) children as well as in children with ASD, using source localization to directly assess activity in the principal generators of the 40 Hz ASSR - left and right primary/secondary auditory cortex. Methods 40 Hz amplitude-modulated tones of 1sec duration were binaurally presented while magnetoencephalography (MEG) data were obtained from forty-eight TD children (45 males; 7- to 14-years-old) and forty-two children with ASD (38 males; 8- to 14-years-old). T1-weighted structural MRI was obtained. Using single dipoles anatomically constrained to each participant's left and right Heschl's Gyrus, left and right 40 Hz ASSR total power (TP) and inter-trial coherence (ITC) measures were obtained. Associations between 40 Hz ASSR TP, ITC and age as well as superior temporal gyrus (STG) gray matter cortical thickness were measured. Group STG function and structure differences were also examined. Results TD and ASD groups did not differ on 40 Hz ASSR TP or ITC. In TD and ASD, age was associated with left and right 40 Hz ASSR ITC (p < 0.01). The interaction term was not significant, indicating in both groups a ~0.01/year increase in ITC. 40 Hz ASSR TP and ITC were greater in the right than left STG. Groups did not differ in STG cortical thickness, and no associations were observed between 40 Hz ASSR activity and STG cortical thickness. Finally, right STG transient gamma (50 to 100 ms and 30 to 50 Hz) was greater
Einstein's steady-state cosmology
NASA Astrophysics Data System (ADS)
O'Raifeartaigh, Cormac
2014-09-01
Last year, a team of Irish scientists discovered an unpublished manuscript by Einstein in which he attempted to construct a "steady-state" model of the universe. Cormac O'Raifeartaigh describes the excitement of finding this previously unknown work.
Inconsistencies in steady state thermodynamics
NASA Astrophysics Data System (ADS)
Dickman, Ronald; Motai, Ricardo
2014-03-01
We address the issue of extending thermodynamics to nonequilibrium steady states. Using driven stochastic lattice gases, we ask whether consistent definitions of an effective chemical potential μ, and an effective temperature Te, are possible. These quantities are determined via zero-flux conditions of particles and energy between the driven system and a reservoir. For the models considered here, the fluxes are given in terms of certain stationary average densities, eliminating the need to perturb the system by actually exchanging particles; μ and Te are thereby obtained via open-circuit measurements, using a virtual reservoir. In the lattice gas with nearest-neighbor exclusion, temperature is not relevant, and we find that the effective chemical potential, a function of density and drive strength, satisfies the zeroth law, and correctly predicts the densities of coexisting systems. In the Katz-Lebowitz-Spohn driven lattice gas, both μ and Te need to be defined. We show analytically that the zeroth law is violated, and determine the size of the violations numerically. Our results highlight a fundamental inconsistency in the extension of thermodynamics to nonequilibrium steady states. Research supported by CNPq, Brazil.
Multimode optical fibers: steady state mode exciter.
Ikeda, M; Sugimura, A; Ikegami, T
1976-09-01
The steady state mode power distribution of the multimode graded index fiber was measured. A simple and effective steady state mode exciter was fabricated by an etching technique. Its insertion loss was 0.5 dB for an injection laser. Deviation in transmission characteristics of multimode graded index fibers can be avoided by using the steady state mode exciter.
Irreversible processes at nonequilibrium steady states
Fox, Ronald Forrest
1979-01-01
It is shown that a Liapunov criterion exists for the stability of nonequilibrium steady states. This criterion is based upon the fluctuation-dissipation relation, as was first pointed out by Keizer. At steady states, the Liapunov function is constructed from the covariance matrix for the thermodynamic variables. Unlike the situation around equilibrium, at steady states the covariance matrix and the “excess entropy” matrix are not equivalent. The excess entropy, which serves as the Liapunov function around equilibrium, does not work in this capacity at steady states. Keizer's Liapunov function must be viewed as the first correct candidate for a proper Liapunov function for steady states. PMID:16592649
Non-Markovianity-assisted steady state entanglement.
Huelga, Susana F; Rivas, Ángel; Plenio, Martin B
2012-04-20
We analyze the steady state entanglement generated in a coherently coupled dimer system subject to dephasing noise as a function of the degree of Markovianity of the evolution. By keeping fixed the effective noise strength while varying the memory time of the environment, we demonstrate that non-Markovianity is an essential, quantifiable resource that may support the formation of steady state entanglement whereas purely Markovian dynamics governed by Lindblad master equations lead to separable steady states. This result illustrates possible mechanisms leading to long-lived entanglement in purely decohering, possibly local, environments. We present a feasible experimental demonstration of this noise assisted phenomenon using a system of trapped ions.
Identification of enzyme inhibitory mechanisms from steady-state kinetics.
Fange, David; Lovmar, Martin; Pavlov, Michael Y; Ehrenberg, Måns
2011-09-01
Enzyme inhibitors are used in many areas of the life sciences, ranging from basic research to the combat of disease in the clinic. Inhibitors are traditionally characterized by how they affect the steady-state kinetics of enzymes, commonly analyzed on the assumption that enzyme-bound and free substrate molecules are in equilibrium. This assumption, implying that an enzyme-bound substrate molecule has near zero probability to form a product rather than dissociate, is valid only for very inefficient enzymes. When it is relaxed, more complex but also more information-rich steady-state kinetics emerges. Although solutions to the general steady-state kinetics problem exist, they are opaque and have been of limited help to experimentalists. Here we reformulate the steady-state kinetics of enzyme inhibition in terms of new parameters. These allow for assessment of ambiguities of interpretation due to kinetic scheme degeneracy and provide an intuitively simple way to analyze experimental data. We illustrate the method by concrete examples of how to assess scheme degeneracy and obtain experimental estimates of all available rate and equilibrium constants. We suggest simple, complementary experiments that can remove ambiguities and greatly enhance the accuracy of parameter estimation.
Optimal Control of Transitions between Nonequilibrium Steady States
Zulkowski, Patrick R.; Sivak, David A.; DeWeese, Michael R.
2013-01-01
Biological systems fundamentally exist out of equilibrium in order to preserve organized structures and processes. Many changing cellular conditions can be represented as transitions between nonequilibrium steady states, and organisms have an interest in optimizing such transitions. Using the Hatano-Sasa Y-value, we extend a recently developed geometrical framework for determining optimal protocols so that it can be applied to systems driven from nonequilibrium steady states. We calculate and numerically verify optimal protocols for a colloidal particle dragged through solution by a translating optical trap with two controllable parameters. We offer experimental predictions, specifically that optimal protocols are significantly less costly than naive ones. Optimal protocols similar to these may ultimately point to design principles for biological energy transduction systems and guide the design of artificial molecular machines. PMID:24386112
Practical steady-state enzyme kinetics.
Lorsch, Jon R
2014-01-01
Enzymes are key components of most biological processes. Characterization of enzymes is therefore frequently required during the study of biological systems. Steady-state kinetics provides a simple and rapid means of assessing the substrate specificity of an enzyme. When combined with site-directed mutagenesis (see Site-Directed Mutagenesis), it can be used to probe the roles of particular amino acids in the enzyme in substrate recognition and catalysis. Effects of interaction partners and posttranslational modifications can also be assessed using steady-state kinetics. This overview explains the general principles of steady-state enzyme kinetics experiments in a practical, rather than theoretical, way. Any biochemistry textbook will have a section on the theory of Michaelis-Menten kinetics, including derivations of the relevant equations. No specific enzymatic assay is described here, although a method for monitoring product formation or substrate consumption over time (an assay) is required to perform the experiments described.
Network inference in the nonequilibrium steady state
NASA Astrophysics Data System (ADS)
Dettmer, Simon L.; Nguyen, H. Chau; Berg, Johannes
2016-11-01
Nonequilibrium systems lack an explicit characterization of their steady state like the Boltzmann distribution for equilibrium systems. This has drastic consequences for the inference of the parameters of a model when its dynamics lacks detailed balance. Such nonequilibrium systems occur naturally in applications like neural networks and gene regulatory networks. Here, we focus on the paradigmatic asymmetric Ising model and show that we can learn its parameters from independent samples of the nonequilibrium steady state. We present both an exact inference algorithm and a computationally more efficient, approximate algorithm for weak interactions based on a systematic expansion around mean-field theory. Obtaining expressions for magnetizations and two- and three-point spin correlations, we establish that these observables are sufficient to infer the model parameters. Further, we discuss the symmetries characterizing the different orders of the expansion around the mean field and show how different types of dynamics can be distinguished on the basis of samples from the nonequilibrium steady state.
Steady state response of unsymmetrically laminated plates
Hosokawa, Kenji; Kawashima, Katsuya; Sakata, Toshiyuki
1995-11-01
A numerical approach for analyzing the forced vibration problem of a symmetrically laminated FRP (fiber reinforced plastic) composite plate was proposed by the authors. In the present paper, this approach is modified for application to an unsymmetrically laminated FRP composite plate. Numerical calculations are carried out for the clamped antisymmetrically laminated rectangular and elliptical plates which are a kind of unsymmetrically laminated plate. Then,, the effects of the lamina material and the fiber orientation angle on the steady state response are discussed. Furthermore, it is investigated that what structural damping factor is most influenced on the steady state response of an antisymmetrically laminated plate.
Steady-State and Pre-Steady-State Kinetic Analysis of Mycobacterium smegmatis Cysteine Ligase (MshC)
Fan, Fan; Luxenburger, Andreas; Painter, Gavin F.; Blanchard, John S
2008-01-01
Mycobacterium tuberculosis and many other members of the Actinomycetes family produce mycothiol, i.e., 1-D-myo-inosityl-2-(N-acetyl-L-cysteinyl)amido-2-deoxy-α-D-glucopyranoside (MSH or AcCys-GlcN-Ins), to act against oxidative and antibiotic stress. The biosynthesis of MSH is essential for cell growth, and has been proposed to proceed via a biosynthetic pathway involving four key enzymes, MshA-D. The MSH biosynthetic enzymes present potential targets for inhibitor design. With this as a long-term goal, we have carried out a kinetic and mechanistic characterization, using steady state and pre-steady state approaches, of the recombinant Mycobacterium smegmatis MshC. MshC catalyzes the ATP-dependent condensation of GlcN-Ins and cysteine to form Cys-GlcN-Ins. Initial velocity and inhibition studies show that the steady state kinetic mechanism of MshC is a Bi Uni Uni Bi Ping Pong mechanism, with ATP binding followed by cysteine binding, release of PPi, binding of GlcN-Ins, followed by the release of Cys-GlcN-Ins and AMP. The steady state kinetic parameters were determined to be: kcat equal to 3.15 s−1, and Km values of 1.8, 0.1, and 0.16 mM for ATP, cysteine, and GlcN-Ins, respectively. A stable bisubstrate analog, 5′-O-[N-(L-cysteinyl)sulfamonyl]adenosine, exhibits competitive inhibition versus ATP and non-competitive inhibition versus cysteine, with an inhibition constant of ~306 nM versus ATP. Single-turnover reactions of the first and second half reactions were determined using rapid quench techniques, giving rates of ~9.4 s−1 and ~5.2 s−1, respectively, consistent with the cysteinyl adenylate being a kinetically competent intermediate in the reaction by MshC. PMID:17848100
The Politics of the Steady State
ERIC Educational Resources Information Center
Taylor, Charles
1978-01-01
A steady state society has limits pertaining to population size, non-renewable resources, and production which emits heat or substances into soil, water, or the atmosphere. Respecting these limits means renouncing exponential quantitative growth and accepting a universally available consumption standard. (SW)
Steady-state inductive spheromak operation
Janos, A.C.; Jardin, S.C.; Yamada, M.
1985-02-20
The inductively formed spheromak configuration (S-1) can be maintained in a highly stable and controlled fashion. The method described eliminates the restriction to pulsed spheromak plasmas or the use of electrodes for steady-state operation, and, therefore, is a reactor-relevant formation and sustainment method.
Steady-state inductive spheromak operation
Janos, Alan C.; Jardin, Stephen C.; Yamada, Masaaki
1987-01-01
The inductively formed spheromak plasma can be maintained in a highly stable and controlled fashion. Steady-state operation is obtained by forming the plasma in the linked mode, then oscillating the poloidal and toroidal fields such that they have different phases. Preferably, the poloidal and magnetic fields are 90.degree. out of phase.
Steady-state spheromak reactor studies. Revision
Krakowski, R.A.; Hagenson, R.L.
1985-01-01
After summarizing the essential elements of a gun-sustained spheromak, the potential for a steady-state is explored by means of a comprehensive physics/engineering/costing model. A range of cost-optimized reactor design point is presented, and the sensitivity of cost to key physics, engineering, and operational variables is reported.
Steady state compact toroidal plasma production
Turner, William C.
1986-01-01
Apparatus and method for maintaining steady state compact toroidal plasmas. A compact toroidal plasma is formed by a magnetized coaxial plasma gun and held in close proximity to the gun electrodes by applied magnetic fields or magnetic fields produced by image currents in conducting walls. Voltage supply means maintains a constant potential across the electrodes producing an increasing magnetic helicity which drives the plasma away from a minimum energy state. The plasma globally relaxes to a new minimum energy state, conserving helicity according to Taylor's relaxation hypothesis, and injecting net helicity into the core of the compact toroidal plasma. Controlling the voltage so as to inject net helicity at a predetermined rate based on dissipative processes maintains or increases the compact toroidal plasma in a time averaged steady state mode.
Variational methods in steady state diffusion problems
Lee, C.E.; Fan, W.C.P.; Bratton, R.L.
1983-01-01
Classical variational techniques are used to obtain accurate solutions to the multigroup multiregion one dimensional steady state neutron diffusion equation. Analytic solutions are constructed for benchmark verification. Functionals with cubic trial functions and conservational lagrangian constraints are exhibited and compared with nonconservational functionals with respect to neutron balance and to relative flux and current at interfaces. Excellent agreement of the conservational functionals using cubic trial functions is obtained in comparison with analytic solutions.
Johnston, Matthew D
2015-06-01
It has been recently observed that the dynamical properties of mass action systems arising from many models of biochemical reaction networks can be characterized by considering the corresponding properties of a related generalized mass action system. The correspondence process known as network translation in particular has been shown to be useful in characterizing a system's steady states. In this paper, we further develop the theory of network translation with particular focus on a subclass of translations known as improper translations. For these translations, we derive conditions on the network topology of the translated network which are sufficient to guarantee the original and translated systems share the same steady states. We then present a mixed-integer linear programming algorithm capable of determining whether a mass action system can be corresponded to a generalized system through the process of network translation.
On Typicality in Nonequilibrium Steady States
NASA Astrophysics Data System (ADS)
Evans, Denis J.; Williams, Stephen R.; Searles, Debra J.; Rondoni, Lamberto
2016-08-01
From the statistical mechanical viewpoint, relaxation of macroscopic systems and response theory rest on a notion of typicality, according to which the behavior of single macroscopic objects is given by appropriate ensembles: ensemble averages of observable quantities represent the measurements performed on single objects, because " almost all" objects share the same fate. In the case of non-dissipative dynamics and relaxation toward equilibrium states, " almost all" is referred to invariant probability distributions that are absolutely continuous with respect to the Lebesgue measure. In other words, the collection of initial micro-states (single systems) that do not follow the ensemble is supposed to constitute a set of vanishing, phase space volume. This approach is problematic in the case of dissipative dynamics and relaxation to nonequilibrium steady states, because the relevant invariant distributions attribute probability 1 to sets of zero volume, while evolution commonly begins in equilibrium states, i.e., in sets of full phase space volume. We consider the relaxation of classical, thermostatted particle systems to nonequilibrium steady states. We show that the dynamical condition known as Ω T-mixing is necessary and sufficient for relaxation of ensemble averages to steady state values. Moreover, we find that the condition known as weak T-mixing applied to smooth observables is sufficient for ensemble relaxation to be independent of the initial ensemble. Lastly, we show that weak T-mixing provides a notion of typicality for dissipative dynamics that is based on the (non-invariant) Lebesgue measure, and that we call physical ergodicity.
Theory of Steady-State Superradiance
NASA Astrophysics Data System (ADS)
Xu, Minghui
In this thesis, I describe the theoretical development of the superradiant laser, or laser in the extreme bad-cavity regime. In this regime, the cavity decay rate is much greater than the atomic dynamics. The atoms emit photons into the cavity mode superradiantly in steady state. We develop group-theoretic methods that enable us to exactly solve mesoscopic systems with hundreds of atoms. We demonstrate the synchronization of atomic dipoles in steady-state superradiance. With this synchronized system, we propose conditional Ramsey spectroscopy which allows us to observe Ramsey fringes indefinitely, even in the presence of atomic decoherence. Furthermore, we explore manifestations of synchronization in the quantum realm with two superradiant atomic ensembles. We show that two such ensembles exhibit a dynamical phase transition from two disparate oscillators to quantum phase-locked dynamics. Finally, we study the mechanical eect of the light-atom interaction in the steady-state superradiance. We find efficient many-body cooling of atoms. The work described in this thesis lays the theoretical foundation for the superradiant laser and for a potential future of active optical frequency standards.
Steady States and Universal Conductance in a Quenched Luttinger Model
NASA Astrophysics Data System (ADS)
Langmann, Edwin; Lebowitz, Joel L.; Mastropietro, Vieri; Moosavi, Per
2017-01-01
We obtain exact analytical results for the evolution of a 1+1-dimensional Luttinger model prepared in a domain wall initial state, i.e., a state with different densities on its left and right sides. Such an initial state is modeled as the ground state of a translation invariant Luttinger Hamiltonian {H_{λ}} with short range non-local interaction and different chemical potentials to the left and right of the origin. The system evolves for time t > 0 via a Hamiltonian {H_{λ'}} which differs from {H_{λ}} by the strength of the interaction. Asymptotically in time, as {t to ∞}, after taking the thermodynamic limit, the system approaches a translation invariant steady state. This final steady state carries a current I and has an effective chemical potential difference {μ+ - μ-} between right- (+) and left- (-) moving fermions obtained from the two-point correlation function. Both I and {μ+ - μ-} depend on {λ} and {λ'}. Only for the case {λ = λ' = 0} does {μ+ - μ-} equal the difference in the initial left and right chemical potentials. Nevertheless, the Landauer conductance for the final state, {G = I/(μ+ - μ-)}, has a universal value equal to the conductance quantum {e^2/h} for the spinless case.
Intensity fluctuations in steady-state superradiance
Meiser, D.; Holland, M. J.
2010-06-15
Alkaline-earth-metal-like atoms with ultranarrow optical transitions enable superradiance in steady state. The emitted light promises to have an unprecedented stability with a linewidth as narrow as a few millihertz. In order to evaluate the potential usefulness of this light source as an ultrastable oscillator in clock and precision metrology applications, it is crucial to understand the noise properties of this device. In this paper, we present a detailed analysis of the intensity fluctuations by means of Monte Carlo simulations and semiclassical approximations. We find that the light exhibits bunching below threshold, is to a good approximation coherent in the superradiant regime, and is chaotic above the second threshold.
Steady state stresses in ribbon parachute canopies
NASA Technical Reports Server (NTRS)
Garrard, W. L.; Wu, K. Y.; Muramoto, K. K.
1984-01-01
An experimental study of the steady state stresses in model ribbon parachute canopies is presented. The distribution of circumferential stress was measured in the horizontal ribbons of two parachutes using Omega sensors. Canopy pressure distributions and overall drag were also measured. Testing was conducted in the University of Minnesota Low-Speed Wind Tunnel at dynamic pressures ranging from 1.0 to 1.5 inches of water. The stresses in the parachute canopies were calculated using the parachute structural analysis code, CANO. It was found that the general shape of the measured and calculated stress distributions was fairly similar; however, the measured stresses were somewhat less than the calculated stresses.
Gravitational steady states of solar coronal loops
NASA Astrophysics Data System (ADS)
Sugiyama, Linda E.; Asgari-Targhi, M.
2017-02-01
Coronal loops on the surface of the sun appear to consist of curved, plasma-confining magnetic flux tubes or "ropes," anchored at both ends in the photosphere. Toroidal loops carrying current are inherently unstable to expansion in the major radius due to toroidal-curvature-induced imbalances in the magnetic and plasma pressures. An ideal MHD analysis of a simple isolated loop with density and pressure higher than the surrounding corona, based on the theory of magnetically confined toroidal plasmas, shows that the radial force balance depends on the loop internal structure and varies over parameter space. It provides a unified picture of simple loop steady states in terms of the plasma beta βo, the inverse aspect ratio ɛ =a /Ro , and the MHD gravitational parameter G ̂≡g a /vA2 , all at the top of the loop, where g is the acceleration due to gravity, a the average minor radius, and vA the shear Alfvén velocity. In the high and low beta tokamak orderings, βo=2 noT /(Bo2/2 μo)˜ɛ1 and ɛ2 , that fit many loops, the solar gravity can sustain nonaxisymmetric steady states at G ̂˜ɛ βo that represent the maximum stable height. At smaller G ̂≤ɛ2βo , the loop is axisymmetric to leading order and stabilized primarily by the two fixed loop ends. Very low beta, nearly force-free, steady states with βo˜ɛ3 may also exist, with or without gravity, depending on higher order effects. The thin coronal loops commonly observed in solar active regions have ɛ ≃0.02 and fit the high beta steady states. G ̂ increases with loop height. Fatter loops in active regions that form along magnetic neutral lines and may lead to solar flares and Coronal Mass Ejections have ɛ ≃0.1 -0.2 and may fit the low beta ordering. Larger loops tend to have G ̂>ɛ βo and be unstable to radial expansion because the exponential hydrostatic reduction in the density at the loop-top reduces the gravitational force -ρG ̂ R ̂ below the level that balances expansion, in agreement with
Intense steady state electron beam generator
Hershcovitch, Ady; Kovarik, Vincent J.; Prelec, Krsto
1990-01-01
An intense, steady state, low emittance electron beam generator is formed by operating a hollow cathode discharge plasma source at critical levels in combination with an extraction electrode and a target electrode that are operable to extract a beam of fast primary electrons from the plasma source through a negatively biased grid that is critically operated to repel bulk electrons toward the plasma source while allowing the fast primary electrons to move toward the target in the desired beam that can be successfully transported for relatively large distances, such as one or more meters away from the plasma source.
Energy repartition in the nonequilibrium steady state
NASA Astrophysics Data System (ADS)
Yan, Peng; Bauer, Gerrit E. W.; Zhang, Huaiwu
2017-01-01
The concept of temperature in nonequilibrium thermodynamics is an outstanding theoretical issue. We propose an energy repartition principle that leads to a spectral (mode-dependent) temperature in steady-state nonequilibrium systems. The general concepts are illustrated by analytic solutions of the classical Heisenberg spin chain connected to Langevin heat reservoirs with arbitrary temperature profiles. Gradients of external magnetic fields are shown to localize spin waves in a Wannier-Zeemann fashion, while magnon interactions renormalize the spectral temperature. Our generic results are applicable to other thermodynamic systems such as Newtonian liquids, elastic solids, and Josephson junctions.
Statistical steady state in turbulent droplet condensation
NASA Astrophysics Data System (ADS)
Siewert, Christoph; Bec, Jérémie; Krstulovic, Giorgio
2017-01-01
Motivated by systems in which droplets grow and shrink in a turbulence-driven supersaturation field, we investigate the problem of turbulent condensation in a general manner. Using direct numerical simulations we show that the turbulent fluctuations of the supersaturation field offer different conditions for the growth of droplets which evolve in time due to turbulent transport and mixing. Based on that, we propose a Lagrangian stochastic model for condensation and evaporation of small droplets in turbulent flows. It consists of a set of stochastic integro-differential equations for the joint evolution of the squared radius and the supersaturation along the droplet trajectories. The model has two parameters fixed by the total amount of water and the thermodynamic properties, as well as the Lagrangian integral timescale of the turbulent supersaturation. The model reproduces very well the droplet size distributions obtained from direct numerical simulations and their time evolution. A noticeable result is that, after a stage where the squared radius simply diffuses, the system converges exponentially fast to a statistical steady state independent of the initial conditions. The main mechanism involved in this convergence is a loss of memory induced by a significant number of droplets undergoing a complete evaporation before growing again. The statistical steady state is characterised by an exponential tail in the droplet mass distribution. These results reconcile those of earlier numerical studies, once these various regimes are considered.
An Intuitive Approach to Steady-State Kinetics.
ERIC Educational Resources Information Center
Raines, Ronald T.; Hansen, David E.
1988-01-01
Attempts to provide an intuitive understanding of steady state kinetics. Discusses the meaning of steady state and uses free energy profiles to illustrate and follow complex kinetic and thermodynamic relationships. Provides examples with explanations. (MVL)
Steady-state mushy layers: Experiments and theory
NASA Astrophysics Data System (ADS)
Peppin, S.; Aussillous, P.; Huppert, Herbert E.; Grae Worster, M.
2006-11-01
A new facility has been developed to investigate mushy layers formed during the steady directional solidification of transparent aqueous solutions in a quasi-two-dimensional system. Experiments have been conducted on NaCl--H20 solutions by translating a Hele-Shaw cell at prescribed rates between fixed heat exchangers providing a temperature gradient of approximately 1,^0C/mm. Ice formed the primary solid phase and the dense residual fluid ponded within the mushy layer at the base of the system. Mathematical predictions of the steady-state temperature profile and mushy layer thickness as functions of freezing rate are in excellent agreement with experimental results. Experiments have also been performed on aqueous NH4Cl solutions, with the salt forming the primary solid phase, yielding buoyancy-driven convection in the mushy layer and the development of chimneys. The lifetime of the chimneys increased with decreasing freezing rate; however, no steady-state chimneys have been observed. Rather, a convecting chimney appears to deplete the surrounding solution and is eventually extinguished. At freezing rates larger than about 5.5,μm/s a uniform mushy layer develops with no chimneys. However, at rates larger than about 5,μm/s a second mode of behaviour is observed in which the mushy layer is thin and there is significant supercooling and nucleation above it. There is hysteresis between the two modes.
Steady state multiplicity of two-step biological conversion systems with general kinetics.
Volcke, E I P; Sbarciog, M; Noldus, E J L; De Baets, B; Loccufier, M
2010-12-01
This study analyses the steady state behaviour of biological conversion systems with general kinetics, in which two consecutive reactions are carried out by two groups of micro-organisms. The model considered is a realistic description of wastewater treatment processes. A step-wise procedure is followed to reveal the mechanisms affecting the occurrence of steady states in terms of the process input variables. It is clearly demonstrated how taking into account inhibition effects by simply including additional inhibition terms to the kinetic expressions, a common practice, influences the model's long term behaviour. The overall steady state behaviour of the model has been summarized in easy-to-interpret operating diagrams, depicting the occurrence of steady states in terms of the reactor dilution rate and the influent substrate concentration, with well-defined boundaries between distinct operating regions. This knowledge is crucial for modelers as steady state multiplicity--in the sense that more than one steady state can be reached depending on the initial conditions--may remain undetected during simulation. The obtained results may also serve for experimental design and for model validation based on experimental findings.
Steady-state models of photosynthesis.
von Caemmerer, Susanne
2013-09-01
In the challenge to increase photosynthetic rate per leaf area mathematical models of photosynthesis can be used to help interpret gas exchange measurements made under different environmental conditions and predict underlying photosynthetic biochemistry. To do this successfully it is important to improve the modelling of temperature dependencies of CO₂ assimilation and gain better understanding of internal CO₂ diffusion limitations. Despite these shortcomings steady-state models of photosynthesis provide simple easy to use tools for thought experiments to explore photosynthetic pathway changes such as redirecting photorespiratory CO₂, inserting bicarbonate pumps into C₃ chloroplasts or inserting C₄ photosynthesis into rice. Here a number of models derived from the C₃ model by Farquhar, von Caemmerer and Berry are discussed and compared.
Steady-state mushy layers: experiments and theory
NASA Astrophysics Data System (ADS)
Peppin, S. S. L.; Aussillous, P.; Huppert, Herbert E.; Grae Worster, M.
A new facility has been developed to investigate the directional solidification of transparent aqueous solutions forming mushy layers in a quasi-two-dimensional system. Experiments have been conducted on NaCl H_{2}O solutions by translating a Hele-Shaw cell at prescribed rates between fixed heat exchangers providing a temperature gradient of approximately 1 (°) C mm(-1) . The mush liquid interface remained planar at all freezing velocities larger than 8 umum s(-1) , while steepling occurred at lower velocities. No significant undercooling of the mush liquid interface was detected at freezing velocities up to 12 umum s(-1) . Mathematical predictions of the steady-state temperature profile and mushy-layer thickness as functions of freezing rate are in excellent agreement with experimental measurements.
Rosenblatt, Marcus; Timmer, Jens; Kaschek, Daniel
2016-01-01
Ordinary differential equation models have become a wide-spread approach to analyze dynamical systems and understand underlying mechanisms. Model parameters are often unknown and have to be estimated from experimental data, e.g., by maximum-likelihood estimation. In particular, models of biological systems contain a large number of parameters. To reduce the dimensionality of the parameter space, steady-state information is incorporated in the parameter estimation process. For non-linear models, analytical steady-state calculation typically leads to higher-order polynomial equations for which no closed-form solutions can be obtained. This can be circumvented by solving the steady-state equations for kinetic parameters, which results in a linear equation system with comparatively simple solutions. At the same time multiplicity of steady-state solutions is avoided, which otherwise is problematic for optimization. When solved for kinetic parameters, however, steady-state constraints tend to become negative for particular model specifications, thus, generating new types of optimization problems. Here, we present an algorithm based on graph theory that derives non-negative, analytical steady-state expressions by stepwise removal of cyclic dependencies between dynamical variables. The algorithm avoids multiple steady-state solutions by construction. We show that our method is applicable to most common classes of biochemical reaction networks containing inhibition terms, mass-action and Hill-type kinetic equations. Comparing the performance of parameter estimation for different analytical and numerical methods of incorporating steady-state information, we show that our approach is especially well-tailored to guarantee a high success rate of optimization.
Rosenblatt, Marcus; Timmer, Jens; Kaschek, Daniel
2016-01-01
Ordinary differential equation models have become a wide-spread approach to analyze dynamical systems and understand underlying mechanisms. Model parameters are often unknown and have to be estimated from experimental data, e.g., by maximum-likelihood estimation. In particular, models of biological systems contain a large number of parameters. To reduce the dimensionality of the parameter space, steady-state information is incorporated in the parameter estimation process. For non-linear models, analytical steady-state calculation typically leads to higher-order polynomial equations for which no closed-form solutions can be obtained. This can be circumvented by solving the steady-state equations for kinetic parameters, which results in a linear equation system with comparatively simple solutions. At the same time multiplicity of steady-state solutions is avoided, which otherwise is problematic for optimization. When solved for kinetic parameters, however, steady-state constraints tend to become negative for particular model specifications, thus, generating new types of optimization problems. Here, we present an algorithm based on graph theory that derives non-negative, analytical steady-state expressions by stepwise removal of cyclic dependencies between dynamical variables. The algorithm avoids multiple steady-state solutions by construction. We show that our method is applicable to most common classes of biochemical reaction networks containing inhibition terms, mass-action and Hill-type kinetic equations. Comparing the performance of parameter estimation for different analytical and numerical methods of incorporating steady-state information, we show that our approach is especially well-tailored to guarantee a high success rate of optimization. PMID:27243005
Steady-state and non-steady state operation of counter-current chromatography devices.
Kostanyan, Artak E; Ignatova, Svetlana N; Sutherland, Ian A; Hewitson, Peter; Zakhodjaeva, Yulya A; Erastov, Andrey A
2013-11-01
Different variants of separation processes based on steady-state (continuous sample loading) and non-steady state (batch) operating modes of CCC columns have been analyzed and compared. The analysis is carried out on the basis of the modified equilibrium cell model, which takes into account both mechanisms of band broadening - interphase mass transfer and axial mixing. A full theoretical treatment of the intermittent counter-current chromatography with short sample loading time is performed. Analytical expressions are presented allowing the simulation of the intermittent counter-current chromatography separations for various experimental conditions. Chromatographic and extraction separations have been compared and advantages and disadvantages of the two methods have been evaluated. Further technical development of the CCC machines to implement counter-current extraction separations is considered.
Steady State Vapor Bubble in Pool Boiling
Zou, An; Chanana, Ashish; Agrawal, Amit; Wayner, Peter C.; Maroo, Shalabh C.
2016-01-01
Boiling, a dynamic and multiscale process, has been studied for several decades; however, a comprehensive understanding of the process is still lacking. The bubble ebullition cycle, which occurs over millisecond time-span, makes it extremely challenging to study near-surface interfacial characteristics of a single bubble. Here, we create a steady-state vapor bubble that can remain stable for hours in a pool of sub-cooled water using a femtosecond laser source. The stability of the bubble allows us to measure the contact-angle and perform in-situ imaging of the contact-line region and the microlayer, on hydrophilic and hydrophobic surfaces and in both degassed and regular (with dissolved air) water. The early growth stage of vapor bubble in degassed water shows a completely wetted bubble base with the microlayer, and the bubble does not depart from the surface due to reduced liquid pressure in the microlayer. Using experimental data and numerical simulations, we obtain permissible range of maximum heat transfer coefficient possible in nucleate boiling and the width of the evaporating layer in the contact-line region. This technique of creating and measuring fundamental characteristics of a stable vapor bubble will facilitate rational design of nanostructures for boiling enhancement and advance thermal management in electronics. PMID:26837464
Inconsistencies in steady-state thermodynamics
NASA Astrophysics Data System (ADS)
Dickman, Ronald; Motai, Ricardo
2014-03-01
We address the issue of extending thermodynamics to nonequilibrium steady states. Using driven stochastic lattice gases, we ask whether consistent definitions of an effective chemical potential μ, and an effective temperature Te, are possible. μ and Te are determined via coexistence, i.e., zero flux of particles and energy between the driven system and a reservoir. In the lattice gas with nearest-neighbor exclusion, temperature is not relevant, and we find that the effective chemical potential, a function of density and drive strength, satisfies the zeroth law, and correctly predicts the densities of coexisting systems. In the Katz-Lebowitz-Spohn driven lattice gas both μ and Te need to be defined. We show analytically that in this case the zeroth law is violated for Metropolis exchange rates, and determine the size of the violations numerically. The zeroth law appears to be violated for generic exchange rates. Remarkably, the system-reservoir coupling proposed by Sasa and Tasaki [J. Stat. Phys. 125, 125 (2006), 10.1007/s10955-005-9021-7] is free of inconsistencies, and the zeroth law holds. This is because the rate depends only on the state of the donor system, and is independent of that of the acceptor.
Maximal lactate steady state in Judo
de Azevedo, Paulo Henrique Silva Marques; Pithon-Curi, Tania; Zagatto, Alessandro Moura; Oliveira, João; Perez, Sérgio
2014-01-01
Summary Background: the purpose of this study was to verify the validity of respiratory compensation threshold (RCT) measured during a new single judo specific incremental test (JSIT) for aerobic demand evaluation. Methods: to test the validity of the new test, the JSIT was compared with Maximal Lactate Steady State (MLSS), which is the gold standard procedure for aerobic demand measuring. Eight well-trained male competitive judo players (24.3 ± 7.9 years; height of 169.3 ± 6.7cm; fat mass of 12.7 ± 3.9%) performed a maximal incremental specific test for judo to assess the RCT and performed on 30-minute MLSS test, where both tests were performed mimicking the UchiKomi drills. Results: the intensity at RCT measured on JSIT was not significantly different compared to MLSS (p=0.40). In addition, it was observed high and significant correlation between MLSS and RCT (r=0.90, p=0.002), as well as a high agreement. Conclusions: RCT measured during JSIT is a valid procedure to measure the aerobic demand, respecting the ecological validity of Judo. PMID:25332923
Steady State Vapor Bubble in Pool Boiling.
Zou, An; Chanana, Ashish; Agrawal, Amit; Wayner, Peter C; Maroo, Shalabh C
2016-02-03
Boiling, a dynamic and multiscale process, has been studied for several decades; however, a comprehensive understanding of the process is still lacking. The bubble ebullition cycle, which occurs over millisecond time-span, makes it extremely challenging to study near-surface interfacial characteristics of a single bubble. Here, we create a steady-state vapor bubble that can remain stable for hours in a pool of sub-cooled water using a femtosecond laser source. The stability of the bubble allows us to measure the contact-angle and perform in-situ imaging of the contact-line region and the microlayer, on hydrophilic and hydrophobic surfaces and in both degassed and regular (with dissolved air) water. The early growth stage of vapor bubble in degassed water shows a completely wetted bubble base with the microlayer, and the bubble does not depart from the surface due to reduced liquid pressure in the microlayer. Using experimental data and numerical simulations, we obtain permissible range of maximum heat transfer coefficient possible in nucleate boiling and the width of the evaporating layer in the contact-line region. This technique of creating and measuring fundamental characteristics of a stable vapor bubble will facilitate rational design of nanostructures for boiling enhancement and advance thermal management in electronics.
NASA Astrophysics Data System (ADS)
Gedeon, M.; Mallants, D.
2012-04-01
Radionuclide concentration predictions in aquifers play an important role in estimating impact of planned surface disposal of radioactive waste in Belgium, developed by the Belgian Agency for Radioactive Waste and Enriched Fissile Materials (ONDRAF), who also coordinates and leads the corresponding research. Long-term concentration predictions are based on a steady-state flow solution obtained by a cascade of multi-scale models from the catchment to the detailed (site) scale performed in MODFLOW. To test the concept and accuracy of the groundwater flow solution and conservativeness of the concentration predictions obtained therewith, a transient model, considered more realistic, was set up in a sub-domain of the intermediate scale steady-state model. Besides the modelling domain reduction, the transient model was and exact copy of the steady-state model, having the infiltration as the only time-varying parameter. The transient model was run for a twenty-year period, whereas the results were compared to the steady-state results based on infiltration value and observations averaged over the same period. The comparison of the steady-state and transient flow solutions includes the analyses of the goodness of fit, the parameter sensitivities, relative importance of the individual observations and one-percent sensitivity maps. The steady-state and transient flow solutions were subsequently translated into a site-scale transport model, used to predict the radionuclide concentrations in a hypothetical well in the aquifers. The translation of the flow solutions between the models of distinct scales was performed using the Local grid refinement method available in MODFLOW. In the site-scale models, MT3DMS transport simulations were performed to obtain respective concentration predictions in a hypothetical well, situated at 70 meters from the disposal tumuli. The equilibrium concentrations based on a constant source flux achieved using a steady-state solution were then
Steady state volcanism - Evidence from eruption histories of polygenetic volcanoes
NASA Technical Reports Server (NTRS)
Wadge, G.
1982-01-01
Cumulative volcano volume curves are presented as evidence for steady-state behavior at certain volcanoes and to develop a model of steady-state volcanism. A minimum criteria of five eruptions over a year was chosen to characterize a steady-state volcano. The subsequent model features a constant head of magmatic pressure from a reservoir supplied from depth, a sawtooth curve produced by the magma arrivals or discharge from the subvolcanic reservoir, large volume eruptions with long repose periods, and conditions of nonsupply of magma. The behavior of Mts. Etna, Nyamuragira, and Kilauea are described and show continuous levels of plasma output resulting in cumulative volume increases. Further discussion is made of steady-state andesitic and dacitic volcanism, long term patterns of the steady state, and magma storage, and the lack of a sufficient number of steady-state volcanoes in the world is taken as evidence that further data is required for a comprehensive model.
Silva, J P; Almeida, Y B; Pinheiro, I O; Knoelchelmann, A; Silva, J M F
2015-02-01
In recent decades, the production of compounds from microorganisms has increased significantly. Glycerol as a source of substrate appears to have great potential, due to its large supply because of the increase in biodiesel production. This paper will discuss the multiplicity of steady states for the production of 1,3-propanediol from glycerol by Clostridium butyricum, employing a model that takes into account inhibition by fermentation products. The theoretical study of bifurcation enabled us to make a qualitative adjustment to the various experimental steady states, using the theoretical steady states obtained from the AUTO2007 program. The theoretical model parameters were varied to fit qualitatively the values of the experimental steady states. In addition, this work is a qualitative study, using experimental steady states that can be used as an initial study for more advanced work on optimizing the production of 1,3-propanediol.
Defining Features of Steady-State Timbres
NASA Astrophysics Data System (ADS)
Hall, Michael D.
1995-01-01
Three experiments were conducted to define steady -state features of timbre for a group of well-trained musicians. Experiment 1 evaluated whether or not pairs of three critical dimensions of timbre--spectral slope (6 or 12 dB/octave), formant structure (/a/ or /i/ vowel), and inharmonicity of partials (harmonic or inharmonic)--were processed in a separable or integral fashion. Accuracy and speed for classification of values along one dimension were examined under different conditions of variability along a second dimension (fixed, correlated, or orthogonal). Spectral slope and formant structure were integral, with classification speed for the target dimension depending upon variability along the orthogonal dimension. In contrast, evidence of asymmetric separability was obtained for inharmonicity. Classification speed for slope and formant structure did not depend on inharmonicity, whereas RT for the target dimension of inharmonicity was strongly influenced by variability along either slope or formant structure. Since the results of Experiment 1 provided a basis for manipulating spectral slope and formant structure as a single feature, these dimensions were correlated in Experiment 2. Subjects searched for targets containing potential features of timbre within arrays of 1-4 inharmonic distractor pitches. Distractors were homogeneous with respect to the dimensions of timbre. When targets had /a/ formants with shallow spectral slopes, search time increased nonlinearly with array size in a manner consistent with the parallel processing of items, and thus feature search. Feature search was not obtained for targets with /i/ formants and steep slopes. Thus, the feature was coded as the presence or absence of /a/ formants with shallow spectral slopes. A search task using heterogeneous distractor values along slope/formant structure was used in Experiment 3 to evaluate whether or not the feature of timbre and pitch were automatically conjoined (integral). Search times for
The steady-state assumption in oscillating and growing systems.
Reimers, Alexandra-M; Reimers, Arne C
2016-10-07
The steady-state assumption, which states that the production and consumption of metabolites inside the cell are balanced, is one of the key aspects that makes an efficient analysis of genome-scale metabolic networks possible. It can be motivated from two different perspectives. In the time-scales perspective, we use the fact that metabolism is much faster than other cellular processes such as gene expression. Hence, the steady-state assumption is derived as a quasi-steady-state approximation of the metabolism that adapts to the changing cellular conditions. In this article we focus on the second perspective, stating that on the long run no metabolite can accumulate or deplete. In contrast to the first perspective it is not immediately clear how this perspective can be captured mathematically and what assumptions are required to obtain the steady-state condition. By presenting a mathematical framework based on the second perspective we demonstrate that the assumption of steady-state also applies to oscillating and growing systems without requiring quasi-steady-state at any time point. However, we also show that the average concentrations may not be compatible with the average fluxes. In summary, we establish a mathematical foundation for the steady-state assumption for long time periods that justifies its successful use in many applications. Furthermore, this mathematical foundation also pinpoints unintuitive effects in the integration of metabolite concentrations using nonlinear constraints into steady-state models for long time periods.
Diehl, S; Zambrano, J; Carlsson, B
2016-01-01
A reduced model of a completely stirred-tank bioreactor coupled to a settling tank with recycle is analyzed in its steady states. In the reactor, the concentrations of one dominant particulate biomass and one soluble substrate component are modelled. While the biomass decay rate is assumed to be constant, growth kinetics can depend on both substrate and biomass concentrations, and optionally model substrate inhibition. Compressive and hindered settling phenomena are included using the Bürger-Diehl settler model, which consists of a partial differential equation. Steady-state solutions of this partial differential equation are obtained from an ordinary differential equation, making steady-state analysis of the entire plant difficult. A key result showing that the ordinary differential equation can be replaced with an approximate algebraic equation simplifies model analysis. This algebraic equation takes the location of the sludge-blanket during normal operation into account, allowing for the limiting flux capacity caused by compressive settling to easily be included in the steady-state mass balance equations for the entire plant system. This novel approach grants the possibility of more realistic solutions than other previously published reduced models, comprised of yet simpler settler assumptions. The steady-state concentrations, solids residence time, and the wastage flow ratio are functions of the recycle ratio. Solutions are shown for various growth kinetics; with different values of biomass decay rate, influent volumetric flow, and substrate concentration.
Inhibiting cytosolic translation and autophagy improves health in mitochondrial disease
Peng, Min; Ostrovsky, Julian; Kwon, Young Joon; Polyak, Erzsebet; Licata, Joseph; Tsukikawa, Mai; Marty, Eric; Thomas, Jeffrey; Felix, Carolyn A.; Xiao, Rui; Zhang, Zhe; Gasser, David L.; Argon, Yair; Falk, Marni J.
2015-01-01
Mitochondrial respiratory chain (RC) disease therapies directed at intra-mitochondrial pathology are largely ineffective. Recognizing that RC dysfunction invokes pronounced extra-mitochondrial transcriptional adaptations, particularly involving dysregulated translation, we hypothesized that translational dysregulation is itself contributing to the pathophysiology of RC disease. Here, we investigated the activities, and effects from direct inhibition, of a central translational regulator (mTORC1) and its downstream biological processes in diverse genetic and pharmacological models of RC disease. Our data identify novel mechanisms underlying the cellular pathogenesis of RC dysfunction, including the combined induction of proteotoxic stress, the ER stress response and autophagy. mTORC1 inhibition with rapamycin partially ameliorated renal disease in B6.Pdss2kd/kd mice with complexes I–III/II–III deficiencies, improved viability and mitochondrial physiology in gas-1(fc21) nematodes with complex I deficiency, and rescued viability across a variety of RC-inhibited human cells. Even more effective was probucol, a PPAR-activating anti-lipid drug that we show also inhibits mTORC1. However, directly inhibiting mTORC1-regulated downstream activities yielded the most pronounced and sustained benefit. Partial inhibition of translation by cycloheximide, or of autophagy by lithium chloride, rescued viability, preserved cellular respiratory capacity and induced mitochondrial translation and biogenesis. Cycloheximide also ameliorated proteotoxic stress via a uniquely selective reduction of cytosolic protein translation. RNAseq-based transcriptome profiling of treatment effects in gas-1(fc21) mutants provide further evidence that these therapies effectively restored altered translation and autophagy pathways toward that of wild-type animals. Overall, partially inhibiting cytosolic translation and autophagy offer novel treatment strategies to improve health across the diverse
A Note on Equations for Steady-State Optimal Landscapes
Liu, H.H.
2010-06-15
Based on the optimality principle (that the global energy expenditure rate is at its minimum for a given landscape under steady state conditions) and calculus of variations, we have derived a group of partial differential equations for describing steady-state optimal landscapes without explicitly distinguishing between hillslopes and channel networks. Other than building on the well-established Mining's equation, this work does not rely on any empirical relationships (such as those relating hydraulic parameters to local slopes). Using additional constraints, we also theoretically demonstrate that steady-state water depth is a power function of local slope, which is consistent with field data.
Steady-state decoupling and design of linear multivariable systems
NASA Technical Reports Server (NTRS)
Thaler, G. J.
1974-01-01
A constructive criterion for decoupling the steady states of a linear time-invariant multivariable system is presented. This criterion consists of a set of inequalities which, when satisfied, will cause the steady states of a system to be decoupled. Stability analysis and a new design technique for such systems are given. A new and simple connection between single-loop and multivariable cases is found. These results are then applied to the compensation design for NASA STOL C-8A aircraft. Both steady-state decoupling and stability are justified through computer simulations.
Einstein's steady-state theory: an abandoned model of the cosmos
NASA Astrophysics Data System (ADS)
O'Raifeartaigh, Cormac; McCann, Brendan; Nahm, Werner; Mitton, Simon
2014-09-01
We present a translation and analysis of an unpublished manuscript by Albert Einstein in which he attempted to construct a `steady-state' model of the universe. The manuscript, which appears to have been written in early 1931, demonstrates that Einstein once explored a cosmic model in which the mean density of matter in an expanding universe is maintained constant by the continuous formation of matter from empty space. This model is very different to previously known Einsteinian models of the cosmos (both static and dynamic) but anticipates the later steady-state cosmology of Hoyle, Bondi and Gold in some ways. We find that Einstein's steady-state model contains a fundamental flaw and suggest that it was abandoned for this reason. We also suggest that he declined to explore a more sophisticated version because he found such theories rather contrived. The manuscript is of historical interest because it reveals that Einstein debated between steady-state and evolving models of the cosmos decades before a similar debate took place in the cosmological community.
An Operational Definition of the Steady State in Enzyme Kinetics.
ERIC Educational Resources Information Center
Barnsley, E. A.
1990-01-01
The Briggs-Haldane assumption is used as the basis for the development of a kinetic model for enzyme catalysis. An alternative definition of the steady state and examples of realistic mechanisms are provided. (KR)
Mantle Sulfur Cycle: A Case for Non-Steady State ?
NASA Astrophysics Data System (ADS)
Cartigny, Pierre; Labidi, Jabrane
2016-04-01
Data published over the last 5 years show that the early inference that mantle is isotopically homogeneous is no more valid. Instead, new generation data on lavas range over a significant 34S/32S variability of up to 5‰ with δ 34S values often correlated to Sr- and Nd-isotope compositions. This new set of data also reveals the Earth's mantle to have a sub-chondritic 34S/32S ratio, by about ˜ 1‰. We will present at the conference our published and unpublished data on samples characterizing the different mantle components (i.e. EM1, EM2, HIMU and LOMU). All illustrate 34S-enrichments compared to MORB with Δ 33S and Δ 36S values indistinguishable from CDT or chondrites at the 0.03‰ level. These data are consistent with the recycling of subducted components carrying sulfur with Δ 33S and Δ 36S-values close to zero. Archean rocks commonly display Δ 33S and Δ 36S values deviating from zero by 1 to 10 ‰. The lack of variations for Δ 33S and Δ 36S values in present day lava argue against the sampling of any subducted protolith of Archean age in their mantle source. Instead, our data are consistent with the occurrence of Proterozoic subducted sulfur in the source of the EM1, EM2, LOMU and HIMU endmember at the St-Helena island. This is in agreement with the age of those components early derived through the use of the Pb isotope systematic. Currently, the negative δ 34S-values of the depleted mantle seem to be associated with mostly positive values of enriched components. This would be inconsistent with the concept a steady state of sulfur. Assuming that the overall observations of recycled sulfur are not biased, the origin of such a non-steady state remains unclear. It could be related to the relatively compatible behavior of sulfur during partial melting, as the residue of present-day melting can be shown to always contain significant amounts of sulfide (50{%} of what is observed in a fertile source). This typical behavior likely prevents an efficient
Attentional Modulation of Auditory Steady-State Responses
Mahajan, Yatin; Davis, Chris; Kim, Jeesun
2014-01-01
Auditory selective attention enables task-relevant auditory events to be enhanced and irrelevant ones suppressed. In the present study we used a frequency tagging paradigm to investigate the effects of attention on auditory steady state responses (ASSR). The ASSR was elicited by simultaneously presenting two different streams of white noise, amplitude modulated at either 16 and 23.5 Hz or 32.5 and 40 Hz. The two different frequencies were presented to each ear and participants were instructed to selectively attend to one ear or the other (confirmed by behavioral evidence). The results revealed that modulation of ASSR by selective attention depended on the modulation frequencies used and whether the activation was contralateral or ipsilateral. Attention enhanced the ASSR for contralateral activation from either ear for 16 Hz and suppressed the ASSR for ipsilateral activation for 16 Hz and 23.5 Hz. For modulation frequencies of 32.5 or 40 Hz attention did not affect the ASSR. We propose that the pattern of enhancement and inhibition may be due to binaural suppressive effects on ipsilateral stimulation and the dominance of contralateral hemisphere during dichotic listening. In addition to the influence of cortical processing asymmetries, these results may also reflect a bias towards inhibitory ipsilateral and excitatory contralateral activation present at the level of inferior colliculus. That the effect of attention was clearest for the lower modulation frequencies suggests that such effects are likely mediated by cortical brain structures or by those in close proximity to cortex. PMID:25334021
The Enlisted Steady State-Simulation (ESS-SIM) Tool
2014-07-01
The Enlisted Steady State-Simulation ( ESS -SIM) Tool David M. Rodney • Peggy A. Golfin • Molly F. McIntosh DIM-2014-U-007587-Final July 2014 This...situation. We built and made use of a simulation model, ESS -Sim (Enlisted Steady- State Simulation), to obtain insights into attainable levels of...fleet manning and estimate the impact of policy changes on fleet man- ning. This information memorandum describes this model. Model overview We built ESS
Multiple steady states in coupled flow tank reactors
NASA Astrophysics Data System (ADS)
Hunt, Katharine L. C.; Kottalam, J.; Hatlee, Michael D.; Ross, John
1992-05-01
Coupling between continuous-flow, stirred tank reactors (CSTR's), each having multiple steady states, can produce new steady states with different concentrations of the chemical species in each of the coupled tanks. In this work, we identify a kinetic potential ψ that governs the deterministic time evolution of coupled tank reactors, when the reaction mechanism permits a single-variable description of the states of the individual tanks; examples include the iodate-arsenous acid reaction, a cubic model suggested by Noyes, and two quintic models. Stable steady states correspond to minima of ψ, and unstable steady states to maxima or saddle points; marginally stable states typically correspond to saddle-node points. We illustrate the variation in ψ due to changes in the rate constant for external material intake (k0) and for exchange between tanks (kx). For fixed k0 values, we analyze the changes in numbers and types of steady states as kx increases from zero. We show that steady states disappear by pairwise coalescence; we also show that new steady states may appear with increasing kx, when the reaction mechanism is sufficiently complex. For fixed initial conditions, the steady state ultimately reached in a mixing experiment may depend on the exchange rate constant as a function of time, kx(t) : Adiabatic mixing is obtained in the limit of slow changes in kx(t) and instantaneous mixing in the limit as kx(t)→∞ while t remains small. Analyses based on the potential ψ predict the outcome of mixing experiments for arbitrary kx(t). We show by explicit counterexamples that a prior theory developed by Noyes does not correctly predict the instability points or the transitions between steady states of coupled tanks, to be expected in mixing experiments. We further show that the outcome of such experiments is not connected to the relative stability of steady states in individual tank reactors. We find that coupling may effectively stabilize the tanks. We provide
On the time to steady state: insights from numerical modeling
NASA Astrophysics Data System (ADS)
Goren, L.; Willett, S.; McCoy, S. W.; Perron, J.
2013-12-01
How fast do fluvial landscapes approach steady state after an application of tectonic or climatic perturbation? While theory and some numerical models predict that the celerity of the advective wave (knickpoint) controls the response time for perturbations, experiments and other landscape evolution models demonstrate that the time to steady state is much longer than the theoretically predicted response time. We posit that the longevity of transient features and the time to steady state are controlled by the stability of the topology and geometry of channel networks. Evolution of a channel network occurs by a combination of discrete capture events and continuous migration of water divides, processes, which are difficult to represent accurately in landscape evolution models. We therefore address the question of the time to steady state using the DAC landscape evolution model that solves accurately for the location of water divides, using a combination of analytical solution for hillslopes and low-order channels together with a numerical solution for higher order channels. DAC also includes an explicit capture criterion. We have tested fundamental predictions from DAC and show that modeled networks reproduce natural network characteristics such as the Hack's exponent and coefficient and the fractal dimension. We define two steady-state criteria: a topographic steady state, defined by global, pointwise steady elevation, and a topological steady state defined as the state in which no further reorganization of the drainage network takes place. Analyzing block uplift simulations, we find that the time to achieve either topographic or topological steady state exceeds by an order of magnitude the theoretical response time of the fluvial network. The longevity of the transient state is the result of the area feedback, by which, migration of a divide changes the local contributing area. This change propagates downstream as a slope adjustment, forcing further divide migrations
Phencyclidine Disrupts the Auditory Steady State Response in Rats
Leishman, Emma; O’Donnell, Brian F.; Millward, James B.; Vohs, Jenifer L.; Rass, Olga; Krishnan, Giri P.; Bolbecker, Amanda R.; Morzorati, Sandra L.
2015-01-01
The Auditory Steady-State Response (ASSR) in the electroencephalogram (EEG) is usually reduced in schizophrenia (SZ), particularly to 40 Hz stimulation. The gamma frequency ASSR deficit has been attributed to N-methyl-D-aspartate receptor (NMDAR) hypofunction. We tested whether the NMDAR antagonist, phencyclidine (PCP), produced similar ASSR deficits in rats. EEG was recorded from awake rats via intracranial electrodes overlaying the auditory cortex and at the vertex of the skull. ASSRs to click trains were recorded at 10, 20, 30, 40, 50, and 55 Hz and measured by ASSR Mean Power (MP) and Phase Locking Factor (PLF). In Experiment 1, the effect of different subcutaneous doses of PCP (1.0, 2.5 and 4.0 mg/kg) on the ASSR in 12 rats was assessed. In Experiment 2, ASSRs were compared in PCP treated rats and control rats at baseline, after acute injection (5 mg/kg), following two weeks of subchronic, continuous administration (5 mg/kg/day), and one week after drug cessation. Acute administration of PCP increased PLF and MP at frequencies of stimulation below 50 Hz, and decreased responses at higher frequencies at the auditory cortex site. Acute administration had a less pronounced effect at the vertex site, with a reduction of either PLF or MP observed at frequencies above 20 Hz. Acute effects increased in magnitude with higher doses of PCP. Consistent effects were not observed after subchronic PCP administration. These data indicate that acute administration of PCP, a NMDAR antagonist, produces an increase in ASSR synchrony and power at low frequencies of stimulation and a reduction of high frequency (> 40 Hz) ASSR activity in rats. Subchronic, continuous administration of PCP, on the other hand, has little impact on ASSRs. Thus, while ASSRs are highly sensitive to NMDAR antagonists, their translational utility as a cross-species biomarker for NMDAR hypofunction in SZ and other disorders may be dependent on dose and schedule. PMID:26258486
Translating Ribosomes Inhibit Poliovirus Negative-Strand RNA Synthesis
Barton, David J.; Morasco, B. Joan; Flanegan, James B.
1999-01-01
Poliovirus has a single-stranded RNA genome of positive polarity that serves two essential functions at the start of the viral replication cycle in infected cells. First, it is translated to synthesize viral proteins and, second, it is copied by the viral polymerase to synthesize negative-strand RNA. We investigated these two reactions by using HeLa S10 in vitro translation-RNA replication reactions. Preinitiation RNA replication complexes were isolated from these reactions and then used to measure the sequential synthesis of negative- and positive-strand RNAs in the presence of different protein synthesis inhibitors. Puromycin was found to stimulate RNA replication overall. In contrast, RNA replication was inhibited by diphtheria toxin, cycloheximide, anisomycin, and ricin A chain. Dose-response experiments showed that precisely the same concentration of a specific drug was required to inhibit protein synthesis and to either stimulate or inhibit RNA replication. This suggested that the ability of these drugs to affect RNA replication was linked to their ability to alter the normal clearance of translating ribosomes from the input viral RNA. Consistent with this idea was the finding that the protein synthesis inhibitors had no measurable effect on positive-strand synthesis in normal RNA replication complexes. In marked contrast, negative-strand synthesis was stimulated by puromycin and was inhibited by cycloheximide. Puromycin causes polypeptide chain termination and induces the dissociation of polyribosomes from mRNA. Cycloheximide and other inhibitors of polypeptide chain elongation “freeze” ribosomes on mRNA and prevent the normal clearance of ribosomes from viral RNA templates. Therefore, it appears that the poliovirus polymerase was not able to dislodge translating ribosomes from viral RNA templates and mediate the switch from translation to negative-strand synthesis. Instead, the initiation of negative-strand synthesis appears to be coordinately regulated
Steady state in a gas of inelastic rough spheres heated by a uniform stochastic force
Vega Reyes, Francisco Santos, Andrés
2015-11-15
We study here the steady state attained in a granular gas of inelastic rough spheres that is subject to a spatially uniform random volume force. The stochastic force has the form of the so-called white noise and acts by adding impulse to the particle translational velocities. We work out an analytical solution of the corresponding velocity distribution function from a Sonine polynomial expansion that displays energy non-equipartition between the translational and rotational modes, translational and rotational kurtoses, and translational-rotational velocity correlations. By comparison with a numerical solution of the Boltzmann kinetic equation (by means of the direct simulation Monte Carlo method), we show that our analytical solution provides a good description that is quantitatively very accurate in certain ranges of inelasticity and roughness. We also find three important features that make the forced granular gas steady state very different from the homogeneous cooling state (attained by an unforced granular gas). First, the marginal velocity distributions are always close to a Maxwellian. Second, there is a continuous transition to the purely smooth limit (where the effects of particle rotations are ignored). And third, the angular translational-rotational velocity correlations show a preference for a quasiperpendicular mutual orientation (which is called “lifted-tennis-ball” behavior)
Pyrazinamide inhibits trans-translation in Mycobacterium tuberculosis.
Shi, Wanliang; Zhang, Xuelian; Jiang, Xin; Yuan, Haiming; Lee, Jong Seok; Barry, Clifton E; Wang, Honghai; Zhang, Wenhong; Zhang, Ying
2011-09-16
Pyrazinamide (PZA) is a first-line tuberculosis drug that plays a unique role in shortening the duration of tuberculosis chemotherapy. PZA is hydrolyzed intracellularly to pyrazinoic acid (POA) by pyrazinamidase (PZase, encoded by pncA), an enzyme frequently lost in PZA-resistant strains, but the target of POA in Mycobacterium tuberculosis has remained elusive. Here, we identify a previously unknown target of POA as the ribosomal protein S1 (RpsA), a vital protein involved in protein translation and the ribosome-sparing process of trans-translation. Three PZA-resistant clinical isolates without pncA mutation harbored RpsA mutations. RpsA overexpression conferred increased PZA resistance, and we confirmed that POA bound to RpsA (but not a clinically identified ΔAla mutant) and subsequently inhibited trans-translation rather than canonical translation. Trans-translation is essential for freeing scarce ribosomes in nonreplicating organisms, and its inhibition may explain the ability of PZA to eradicate persisting organisms.
Inhibition of insulin synthesis by cyproheptadine: effects on translation.
Hawkins, Belinda S; Fischer, Lawrence J
2004-06-01
The antihistaminic, antiserotonergic drug cyproheptadine (CPH) is known to inhibit insulin synthesis in vivo and in vitro. This inhibition of insulin synthesis occurs without a commensurate decrease in preproinsulin mRNA (PPImRNA) levels, suggesting a post-transcriptional mechanism of action. The goal of the present study was to investigate the direct effects of CPH on translation of PPImRNA in RINm5F cells. Results produced using a subcellular fractionation technique followed by real-time RT-PCR indicated that a 2-h 10 microM CPH treatment resulted in a decrease in the percentage of cellular PPImRNA associated with endoplasmic reticulum (ER) bound polysomes and increases in the percentages of translationally uninitiated and monoribosome-associated PPImRNA. These alterations in PPImRNA distribution were found to be concentration-dependent, chemical structure-specific, and reversible with a time course consistent with a previously reported CPH-induced inhibition of insulin synthesis. Further investigations to examine the possible effect of CPH on translation initiation were then undertaken by examining the phosphorylation state of the translation initiation factors eIF2alpha, eIF4E, and 4E-BP1 after CPH treatment. CPH (10 microM) treatment resulted in increased phosphorylation of eIF2alpha, and decreased phosphorylation of both eIF4E and 4E-BP1. These changes are all consistent with decreased initiation of translation. Taken together, these results suggest that the inhibition of insulin synthesis known to be elicited by CPH treatment of RINm5F cells and intact animals involves alterations of initiation factor phosphorylation leading to a decrease in insulin synthesis and of stored insulin in insulin-producing cells.
Structural simplification of chemical reaction networks in partial steady states.
Madelaine, Guillaume; Lhoussaine, Cédric; Niehren, Joachim; Tonello, Elisa
2016-11-01
We study the structural simplification of chemical reaction networks with partial steady state semantics assuming that the concentrations of some but not all species are constant. We present a simplification rule that can eliminate intermediate species that are in partial steady state, while preserving the dynamics of all other species. Our simplification rule can be applied to general reaction networks with some but few restrictions on the possible kinetic laws. We can also simplify reaction networks subject to conservation laws. We prove that our simplification rule is correct when applied to a module of a reaction network, as long as the partial steady state is assumed with respect to the complete network. Michaelis-Menten's simplification rule for enzymatic reactions falls out as a special case. We have implemented an algorithm that applies our simplification rules repeatedly and applied it to reaction networks from systems biology.
Poissonian steady states: from stationary densities to stationary intensities.
Eliazar, Iddo
2012-10-01
Markov dynamics are the most elemental and omnipresent form of stochastic dynamics in the sciences, with applications ranging from physics to chemistry, from biology to evolution, and from economics to finance. Markov dynamics can be either stationary or nonstationary. Stationary Markov dynamics represent statistical steady states and are quantified by stationary densities. In this paper, we generalize the notion of steady state to the case of general Markov dynamics. Considering an ensemble of independent motions governed by common Markov dynamics, we establish that the entire ensemble attains Poissonian steady states which are quantified by stationary Poissonian intensities and which hold valid also in the case of nonstationary Markov dynamics. The methodology is applied to a host of Markov dynamics, including Brownian motion, birth-death processes, random walks, geometric random walks, renewal processes, growth-collapse dynamics, decay-surge dynamics, Ito diffusions, and Langevin dynamics.
A simplified approach to estimating the maximal lactate steady state.
Snyder, A C; Woulfe, T; Welsh, R; Foster, C
1994-01-01
The exercise intensity associated with an elevated but stable blood lactate (HLa) concentration during constant load work (the maximal steady state, MSS) has received attention as a candidate for the "optimal" exercise intensity for endurance training. Identification of MSS ordinarily demands direct measurement of HLa or respiratory metabolism. The purpose of this study was to test the ability of heart rate (HR) to identify MSS during steady state exercise, similar to that used in conventional exercise prescription. Trained runners (n = 9) and cyclists (n = 12) performed incremental and steady state exercise. MSS was defined as the highest intensity in which blood lactate concentration increased < 1.0 mM from minutes 10 to 30. The next higher intensity workbout completed was defined as > MSS. HR models related to the presence or absence of steady state conditions were developed from the upper 95% confidence interval of MSS and the lower 95% confidence interval of > MSS. Cross validation of the model to predict MSS was performed using 21 running and 45 cycling exercise bouts in a separate group. Using the MSS upper 95% confidence interval model 84% and 76% of workbouts were correctly predicted in cyclists and runners, respectively. Using the > MSS lower 95% confidence interval model, 76% and 81% of workbouts were correctly predicted in cyclists and runners, respectively. Prediction errors tended to incorrectly predict non-steady state conditions when steady state had occurred (16/26) (62%). We conclude that use of these simple HR models may predict MSS with sufficient accuracy to be useful when direct HLa measurement is not available.
Steady-state error of a system with fuzzy controller.
Butkiewicz, B S
1998-01-01
We consider the problem of control error of a fuzzy system with feedback. The system consists of a plant, linear or nonlinear, fuzzy controller, and feedback loop. As controller we use both PD and PI fuzzy type controllers. We apply different t-norm and co-norm: logic, algebraic, Yager, Hamacher, bounded, drastic, etc. in the process of fuzzy reasoning. Triangular shape of membership functions is supposed, but we generalize the results obtained. Steady-state error of a system is calculated. We have obtained very interesting results. The steady-state error is identical for pairs of triangular t- and co-norms.
Mapping current fluctuations of stochastic pumps to nonequilibrium steady states
NASA Astrophysics Data System (ADS)
Rotskoff, Grant M.
2017-03-01
We show that current fluctuations in a stochastic pump can be robustly mapped to fluctuations in a corresponding time-independent nonequilibrium steady state. We thus refine a recently proposed mapping so that it ensures equivalence of not only the averages, but also optimal representation of fluctuations in currents and density. Our mapping leads to a natural decomposition of the entropy production in stochastic pumps similar to the "housekeeping" heat. As a consequence of the decomposition of entropy production, the current fluctuations in weakly perturbed stochastic pumps are shown to satisfy a universal bound determined by the steady state entropy production.
Descriptive Linear modeling of steady-state visual evoked response
NASA Technical Reports Server (NTRS)
Levison, W. H.; Junker, A. M.; Kenner, K.
1986-01-01
A study is being conducted to explore use of the steady state visual-evoke electrocortical response as an indicator of cognitive task loading. Application of linear descriptive modeling to steady state Visual Evoked Response (VER) data is summarized. Two aspects of linear modeling are reviewed: (1) unwrapping the phase-shift portion of the frequency response, and (2) parsimonious characterization of task-loading effects in terms of changes in model parameters. Model-based phase unwrapping appears to be most reliable in applications, such as manual control, where theoretical models are available. Linear descriptive modeling of the VER has not yet been shown to provide consistent and readily interpretable results.
2012-01-01
The Steady State (SS) probability distribution is an important quantity needed to characterize the steady state behavior of many stochastic biochemical networks. In this paper, we propose an efficient and accurate approach to calculating an approximate SS probability distribution from solution of the Chemical Master Equation (CME) under the assumption of the existence of a unique deterministic SS of the system. To find the approximate solution to the CME, a truncated state-space representation is used to reduce the state-space of the system and translate it to a finite dimension. The subsequent ill-posed eigenvalue problem of a linear system for the finite state-space can be converted to a well-posed system of linear equations and solved. The proposed strategy yields efficient and accurate estimation of noise in stochastic biochemical systems. To demonstrate the approach, we applied the method to characterize the noise behavior of a set of biochemical networks of ligand-receptor interactions for Bone Morphogenetic Protein (BMP) signaling. We found that recruitment of type II receptors during the receptor oligomerization by itself doesn't not tend to lower noise in receptor signaling, but regulation by a secreted co-factor may provide a substantial improvement in signaling relative to noise. The steady state probability approximation method shortened the time necessary to calculate the probability distributions compared to earlier approaches, such as Gillespie's Stochastic Simulation Algorithm (SSA) while maintaining high accuracy. PMID:23134718
The general mode of translation inhibition by macrolide antibiotics.
Kannan, Krishna; Kanabar, Pinal; Schryer, David; Florin, Tanja; Oh, Eugene; Bahroos, Neil; Tenson, Tanel; Weissman, Jonathan S; Mankin, Alexander S
2014-11-11
Macrolides are clinically important antibiotics thought to inhibit bacterial growth by impeding the passage of newly synthesized polypeptides through the nascent peptide exit tunnel of the bacterial ribosome. Recent data challenged this view by showing that macrolide antibiotics can differentially affect synthesis of individual proteins. To understand the general mechanism of macrolide action, we used genome-wide ribosome profiling and analyzed the redistribution of ribosomes translating highly expressed genes in bacterial cells treated with high concentrations of macrolide antibiotics. The metagene analysis indicated that inhibition of early rounds of translation, which would be characteristic of the conventional view of macrolide action, occurs only at a limited number of genes. Translation of most genes proceeds past the 5'-proximal codons and can be arrested at more distal codons when the ribosome encounters specific short sequence motifs. The problematic sequence motifs are confined to the nascent peptide residues in the peptidyl transferase center but not to the peptide segment that contacts the antibiotic molecule in the exit tunnel. Therefore, it appears that the general mode of macrolide action involves selective inhibition of peptide bond formation between specific combinations of donor and acceptor substrates. Additional factors operating in the living cell but not functioning during in vitro protein synthesis may modulate site-specific action of macrolide antibiotics.
Pre-Steady-State Decoding of the Bicoid Morphogen Gradient
Bergmann, Sven; Sandler, Oded; Sberro, Hila; Shnider, Sara; Schejter, Eyal; Shilo, Ben-Zion; Barkai, Naama
2007-01-01
Morphogen gradients are established by the localized production and subsequent diffusion of signaling molecules. It is generally assumed that cell fates are induced only after morphogen profiles have reached their steady state. Yet, patterning processes during early development occur rapidly, and tissue patterning may precede the convergence of the gradient to its steady state. Here we consider the implications of pre-steady-state decoding of the Bicoid morphogen gradient for patterning of the anterior–posterior axis of the Drosophila embryo. Quantitative analysis of the shift in the expression domains of several Bicoid targets (gap genes) upon alteration of bcd dosage, as well as a temporal analysis of a reporter for Bicoid activity, suggest that a transient decoding mechanism is employed in this setting. We show that decoding the pre-steady-state morphogen profile can reduce patterning errors caused by fluctuations in the rate of morphogen production. This can explain the surprisingly small shifts in gap and pair-rule gene expression domains observed in response to alterations in bcd dosage. PMID:17298180
Steady-State Multiplicity Features of Chemically Reacting Systems.
ERIC Educational Resources Information Center
Luss, Dan
1986-01-01
Analyzes steady-state multiplicity in chemical reactors, focusing on the use of two mathematical tools, namely, the catastrophe theory and the singularity theory with a distinguished parameter. These tools can be used to determine the maximum number of possible solutions and the different types of bifurcation diagrams. (JN)
Pressure updating methods for the steady-state fluid equations
NASA Technical Reports Server (NTRS)
Fiterman, A.; Turkel, E.; Vatsa, V.
1995-01-01
We consider the steady state equations for a compressible fluid. Since we wish to solve for a range of speeds we must consider the equations in conservation form. For transonic speeds these equations are of mixed type. Hence, the usual approach is to add time derivatives to the steady state equations and then march these equations in time. One then adds a time derivative of the density to the continuity equation, a derivative of the momentum to the momentum equation and a derivative of the total energy to the energy equation. This choice is dictated by the time consistent equations. However, since we are only interested in the steady state this is not necessary. Thus we shall consider the possibility of adding a time derivative of the pressure to the continuity equation and similar modifications for the energy equation. This can then be generalized to adding combinations of time derivatives to each equation since these vanish in the steady state. When using acceleration techniques such as residual smoothing, multigrid, etc. these are applied to the pressure rather than the density. Hence, the code duplicates the behavior of the incompressible equations for low speeds.
CONTROL OF CRYPTOSPORIDIUM OOCYSTS BY STEADY-STATE CONVENTIONAL TREATMENT
Pilot-scale experiments have been performed to assess the ability of conventional treatment to control Cryptosporidium oocysts under steady-state conditions. The work was performed with a pilot plant that was designed to minimize flow rates and, as a result, the number of oocyst...
Steady-State Pharmacokinetics of Bupropion SR in Juvenile Patients
ERIC Educational Resources Information Center
Daviss, W. Burleson; Perel, James M.; Rudolph, George R.; Axelson, David A.; Gilchrist, Richard; Nuss, Sharon; Birmaher, Boris; Brent, David A.
2005-01-01
Objective: To examine the steady-state pharmacokinetic properties of bupropion sustained release (SR) and their potential developmental differences in youths. Method: Eleven boys and eight girls aged 11 to 17 years old were prescribed bupropion SR monotherapy for attention-deficit/hyperactivity disorder (n = 16) and/or depressive disorders (n =…
The concave river long profile: a morphodynamic steady state?
NASA Astrophysics Data System (ADS)
Blom, A.
2011-12-01
By definition, a morphodynamic steady state is governed by a spatially constant sediment transport rate. As the sediment transport rate is a function of shear stress associated with skin friction, the morphodynamic steady state has been considered to be governed by a spatially constant bed slope. For this reason, the typical concave river long profile has been considered to be a quasi-steady state. The river's steady state has been considered to be one with a spatially constant bed slope, with tributaries inducing a stepwise decrease in bed slope in streamwise direction. Yet, for the sediment transport rate to be spatially constant, it rather is the product of water surface slope and water depth associated with skin friction that needs to be constant. This implies that physical mechanisms that induce streamwise variation in the sediment transport rate can be compensated by a streamwise variation in bed slope so as to guarantee a spatially constant sediment transport rate. Following the river course, such physical mechanisms can be bedrock exposure, partial transport, and a spatially lagging bedform growth. At locations where tributaries increase the water discharge, the above mechanisms cause the river bed profile to be upward concave over a significant reach. At bifucations or at locations where river widening prevails, the river bed profile is upward convex.
Combined Steady-State and Dynamic Heat Exchanger Experiment
ERIC Educational Resources Information Center
Luyben, William L.; Tuzla, Kemal; Bader, Paul N.
2009-01-01
This paper describes a heat-transfer experiment that combines steady-state analysis and dynamic control. A process-water stream is circulated through two tube-in-shell heat exchangers in series. In the first, the process water is heated by steam. In the second, it is cooled by cooling water. The equipment is pilot-plant size: heat-transfer areas…
Equilibrium Binding and Steady-State Enzyme Kinetics.
ERIC Educational Resources Information Center
Dunford, H. Brian
1984-01-01
Points out that equilibrium binding and steady-state enzyme kinetics have a great deal in common and that related equations and error analysis can be cast in identical forms. Emphasizes that if one type of problem solution is taught, the other is also taught. Various methods of data analysis are evaluated. (JM)
Steady States of the Parametric Rotator and Pendulum
ERIC Educational Resources Information Center
Bouzas, Antonio O.
2010-01-01
We discuss several steady-state rotation and oscillation modes of the planar parametric rotator and pendulum with damping. We consider a general elliptic trajectory of the suspension point for both rotator and pendulum, for the latter at an arbitrary angle with gravity, with linear and circular trajectories as particular cases. We treat the…
Steady State Load Characterization Fact Sheet: 2012 Chevy Volt
Scoffield, Don
2015-03-01
This fact sheet characterizes the steady state charging behavior of a 2012 Chevy Volt. Both level 1 charging (120 volt) and level 2 charging (208 volts) is investigated. This fact sheet contains plots of efficiency, power factor, and current harmonics as vehicle charging is curtailed. Prominent current harmonics are also displayed in a histogram for various charge rates.
Density Functional Theory for Steady-State Nonequilibrium Molecular Junctions
Liu, Shuanglong; Nurbawono, Argo; Zhang, Chun
2015-01-01
We present a density functional theory (DFT) for steady-state nonequilibrium quantum systems such as molecular junctions under a finite bias. Based on the steady-state nonequilibrium statistics that maps nonequilibrium to an effective equilibrium, we show that ground-state DFT (GS-DFT) is not applicable in this case and two densities, the total electron density and the density of current-carrying electrons, are needed to uniquely determine the properties of the corresponding nonequilibrium system. A self-consistent mean-field approach based on two densities is then derived. The theory is implemented into SIESTA computational package and applied to study nonequilibrium electronic/transport properties of a realistic carbon-nanotube (CNT)/Benzene junction. Results obtained from our steady-state DFT (SS-DFT) are compared with those of conventional GS-DFT based transport calculations. We show that SS-DFT yields energetically more stable nonequilibrium steady state, predicts significantly lower electric current, and is able to produce correct electronic structures in local equilibrium under a limiting case. PMID:26472080
Steady-State Squeezing in the Micromaser Cavity Field
NASA Technical Reports Server (NTRS)
Nayak, N.
1996-01-01
It is shown that the radiation field in the presently operated micromaser cavity may be squeezed when pumped with polarized atoms. The squeezing is in the steady state field corresponding to the action similar to that of the conventional micromaser, with the effect of cavity dissipation during entire t(sub c) = tau + t(sub cav).
Alcohols inhibit translation to regulate morphogenesis in C. albicans.
Egbe, Nkechi E; Paget, Caroline M; Wang, Hui; Ashe, Mark P
2015-04-01
Many molecules are secreted into the growth media by microorganisms to modulate the metabolic and physiological processes of the organism. For instance, alcohols like butanol, ethanol and isoamyl alcohol are produced by the human pathogenic fungus, Candida albicans and induce morphological differentiation. Here we show that these same alcohols cause a rapid inhibition of protein synthesis. More specifically, the alcohols target translation initiation, a complex stage of the gene expression process. Using molecular techniques, we have identified the likely translational target of these alcohols in C. albicans as the eukaryotic translation initiation factor 2B (eIF2B). eIF2B is the guanine nucleotide exchange factor for eIF2, which supports the exchange reaction where eIF2.GDP is converted to eIF2.GTP. Even minimal regulation at this step will lead to alterations in the levels of specific proteins that may allow the exigencies of the fungus to be realised. Indeed, similar to the effects of alcohols, a minimal inhibition of protein synthesis with cycloheximide also causes an induction of filamentous growth. These results suggest a molecular basis for the effect of various alcohols on morphological differentiation in C. albicans.
Steady state volcanism: Evidence from eruption histories of polygenetic volcanoes
Wadge, G.
1982-05-10
Some volcanoes erupt magma at average rates which are constant over periods of many years, even through this magma may appear in a complex series of eruptions. This constancy of output is tested by construction of a curve of cumulative volume of erupted magma, which is linear for steady state volcanism, and whose gradient defines the steady state rate Q/sub s/s. The assumption is made that Q/sub s/s is the rate at which magma is supplied to these polygenetic volcanoes. Five general types of eruptive behavior can be distinguished from the cumulative volume studied. These types are interpreted in terms of a simple model of batches of magma rising buoyantly through the crust and interacting with a small-capacity subvolcanic magma reservoir. Recognition of previous steady state behavior at a volcano may enable the cumulative volume curve to be used empirically as a constraint on the timing and volume of the next eruption. The steady state model thus has a limited predictive capability. With the exception of Kilauea (O/sub s/s = 4m/sup 3/ s/sup -1/) all the identified steady state volcanoes have values of Q/sub s/s of a few tenths of one cubic meter per second. These rates are consistent with the minimum flux rates required by theoretical cooling models of batches of magma traversing the crust. The similarity of these Q/sub s/s values of volcanoes (producing basalt, andesite, and dacite magmas) in very different tectonic settings suggests that the common factors of crustal buoyancy forces and the geotherm-controlled cooling rates control the dynamics of magma supply through the crust. Long-term dormancy at active volcanoes may be a manifestation of the steady accumulation of magma in large crustal reservoirs, a process that complements the intermittent periods of steady state output at the surface. This possibility has several implications, the most important of which is that it provides a constraint on the supply rate of new magma to the bases of plutons.
Simulations of KSTAR high performance steady state operation scenarios
NASA Astrophysics Data System (ADS)
Na, Yong-Su; Kessel, C. E.; Park, J. M.; Yi, Sumin; Becoulet, A.; Sips, A. C. C.; Kim, J. Y.
2009-11-01
We report the results of predictive modelling of high performance steady state operation scenarios in KSTAR. Firstly, the capabilities of steady state operation are investigated with time-dependent simulations using a free-boundary plasma equilibrium evolution code coupled with transport calculations. Secondly, the reproducibility of high performance steady state operation scenarios developed in the DIII-D tokamak, of similar size to that of KSTAR, is investigated using the experimental data taken from DIII-D. Finally, the capability of ITER-relevant steady state operation is investigated in KSTAR. It is found that KSTAR is able to establish high performance steady state operation scenarios; βN above 3, H98(y, 2) up to 2.0, fBS up to 0.76 and fNI equals 1.0. In this work, a realistic density profile is newly introduced for predictive simulations by employing the scaling law of a density peaking factor. The influence of the current ramp-up scenario and the transport model is discussed with respect to the fusion performance and non-inductive current drive fraction in the transport simulations. As observed in the experiments, both the heating and the plasma current waveforms in the current ramp-up phase produce a strong effect on the q-profile, the fusion performance and also on the non-inductive current drive fraction in the current flattop phase. A criterion in terms of qmin is found to establish ITER-relevant steady state operation scenarios. This will provide a guideline for designing the current ramp-up phase in KSTAR. It is observed that the transport model also affects the predictive values of fusion performance as well as the non-inductive current drive fraction. The Weiland transport model predicts the highest fusion performance as well as non-inductive current drive fraction in KSTAR. In contrast, the GLF23 model exhibits the lowest ones. ITER-relevant advanced scenarios cannot be obtained with the GLF23 model in the conditions given in this work. Finally
Simulations of KSTAR high performance steady state operation scenarios
Na, Y S; Kessel, C. E.; Park, Jin Myung; Yi, Sumin; Becoulet, A.; Sips, A C C; Kim, J Y
2009-01-01
We report the results of predictive modelling of high performance steady state operation scenarios in KSTAR. Firstly, the capabilities of steady state operation are investigated with time-dependent simulations using a free-boundary plasma equilibrium evolution code coupled with transport calculations. Secondly, the reproducibility of high performance steady state operation scenarios developed in the DIII-D tokamak, of similar size to that of KSTAR, is investigated using the experimental data taken from DIII-D. Finally, the capability of ITER-relevant steady state operation is investigated in KSTAR. It is found that KSTAR is able to establish high performance steady state operation scenarios; beta(N) above 3, H-98(y, 2) up to 2.0, f(BS) up to 0.76 and f(NI) equals 1.0. In this work, a realistic density profile is newly introduced for predictive simulations by employing the scaling law of a density peaking factor. The influence of the current ramp-up scenario and the transport model is discussed with respect to the fusion performance and non-inductive current drive fraction in the transport simulations. As observed in the experiments, both the heating and the plasma current waveforms in the current ramp-up phase produce a strong effect on the q-profile, the fusion performance and also on the non-inductive current drive fraction in the current flattop phase. A criterion in terms of q(min) is found to establish ITER-relevant steady state operation scenarios. This will provide a guideline for designing the current ramp-up phase in KSTAR. It is observed that the transport model also affects the predictive values of fusion performance as well as the non-inductive current drive fraction. The Weiland transport model predicts the highest fusion performance as well as non-inductive current drive fraction in KSTAR. In contrast, the GLF23 model exhibits the lowest ones. ITER-relevant advanced scenarios cannot be obtained with the GLF23 model in the conditions given in this work
Extending Molecular Theory to Steady-State Diffusing Systems
FRINK,LAURA J. D.; SALINGER,ANDREW G.; THOMPSON,AIDAN P.
1999-10-22
Predicting the properties of nonequilibrium systems from molecular simulations is a growing area of interest. One important class of problems involves steady state diffusion. To study these cases, a grand canonical molecular dynamics approach has been developed by Heffelfinger and van Swol [J. Chem. Phys., 101, 5274 (1994)]. With this method, the flux of particles, the chemical potential gradients, and density gradients can all be measured in the simulation. In this paper, we present a complementary approach that couples a nonlocal density functional theory (DFT) with a transport equation describing steady-state flux of the particles. We compare transport-DFT predictions to GCMD results for a variety of ideal (color diffusion), and nonideal (uphill diffusion and convective transport) systems. In all cases excellent agreement between transport-DFT and GCMD calculations is obtained with diffusion coefficients that are invariant with respect to density and external fields.
Multiplying steady-state culture in multi-reactor system.
Erm, Sten; Adamberg, Kaarel; Vilu, Raivo
2014-11-01
Cultivation of microorganisms in batch experiments is fast and economical but the conditions therein change constantly, rendering quantitative data interpretation difficult. By using chemostat with controlled environmental conditions the physiological state of microorganisms is fixed; however, the unavoidable stabilization phase makes continuous methods resource consuming. Material can be spared by using micro scale devices, which however have limited analysis and process control capabilities. Described herein are a method and a system combining the high throughput of batch with the controlled environment of continuous cultivations. Microorganisms were prepared in one bioreactor followed by culture distribution into a network of bioreactors and continuation of independent steady state experiments therein. Accelerostat cultivation with statistical analysis of growth parameters demonstrated non-compromised physiological state following distribution, thus the method effectively multiplied steady state culture of microorganisms. The theoretical efficiency of the system was evaluated in inhibitory compound analysis using repeated chemostat to chemostat transfers.
Hydrodynamics of stratified epithelium: Steady state and linearized dynamics
NASA Astrophysics Data System (ADS)
Yeh, Wei-Ting; Chen, Hsuan-Yi
2016-05-01
A theoretical model for stratified epithelium is presented. The viscoelastic properties of the tissue are assumed to be dependent on the spatial distribution of proliferative and differentiated cells. Based on this assumption, a hydrodynamic description of tissue dynamics at the long-wavelength, long-time limit is developed, and the analysis reveals important insights into the dynamics of an epithelium close to its steady state. When the proliferative cells occupy a thin region close to the basal membrane, the relaxation rate towards the steady state is enhanced by cell division and cell apoptosis. On the other hand, when the region where proliferative cells reside becomes sufficiently thick, a flow induced by cell apoptosis close to the apical surface enhances small perturbations. This destabilizing mechanism is general for continuous self-renewal multilayered tissues; it could be related to the origin of certain tissue morphology, tumor growth, and the development pattern.
Nonequilibrium Steady States of a Stochastic Model System.
NASA Astrophysics Data System (ADS)
Zhang, Qiwei
We study the nonequilibrium steady state of a stochastic lattice gas model, originally proposed by Katz, Lebowitz and Spohn (Phys. Rev. B 28: 1655 (1983)). Firstly, we solve the model on some small lattices exactly in order to see the general dependence of the steady state upon different parameters of the model. Nextly, we derive some analytical results for infinite lattice systems by taking some suitable limits. We then present some renormalization group results for the continuum version of the model via field theoretical techniques, the supersymmetry of the critical dynamics in zero field is also explored. Finally, we report some very recent 3-D Monte Carlo simulation results, which have been obtained by applying Multi-Spin-Coding techniques on a CDC vector supercomputer - Cyber 205 at John von Neumann Center.
Turnover of messenger RNA: Polysome statistics beyond the steady state
NASA Astrophysics Data System (ADS)
Valleriani, A.; Ignatova, Z.; Nagar, A.; Lipowsky, R.
2010-03-01
The interplay between turnover or degradation and ribosome loading of messenger RNA (mRNA) is studied theoretically using a stochastic model that is motivated by recent experimental results. Random mRNA degradation affects the statistics of polysomes, i.e., the statistics of the number of ribosomes per mRNA as extracted from cells. Since ribosome loading of newly created mRNA chains requires some time to reach steady state, a fraction of the extracted mRNA/ribosome complexes does not represent steady state conditions. As a consequence, the mean ribosome density obtained from the extracted complexes is found to be inversely proportional to the mRNA length. On the other hand, the ribosome density profile shows an exponential decrease along the mRNA for prokaryotes and becomes uniform in eukaryotic cells.
Harmonic coupling of steady-state visual evoked potentials.
Krusienski, Dean J; Allison, Brendan Z
2008-01-01
Steady-state visual evoked potentials (SSVEPs) are oscillating components of the electroencephalogram (EEG) that are detected over the occipital areas, having frequencies corresponding to visual stimulus frequencies. SSVEPs have been demonstrated to be reliable control signals for operating a brain-computer interface (BCI). This study uses offline analyses to investigate the characteristics of SSVEP harmonic amplitude and phase coupling and the impact of using this information to construct a matched filter for continuously tracking the signal.
Analytic Steady-State Accuracy of a Spacecraft Attitude Estimator
NASA Technical Reports Server (NTRS)
Markley, F. Landis
2000-01-01
This paper extends Farrenkopf's analysis of a single-axis spacecraft attitude estimator using gyro and angle sensor data to include the angle output white noise of a rate-integrating gyro. Analytic expressions are derived for the steady-state pre-update and post-update angle and drift bias variances and for the state update equations. It is shown that only part of the state update resulting from the angle sensor measurement is propagated to future times.
The approach to steady state using homogeneous and Cartesian coordinates.
Gochberg, D F; Ding, Z
2013-01-01
Repeating an arbitrary sequence of RF pulses and magnetic field gradients will eventually lead to a steady-state condition in any magnetic resonance system. While numerical methods can quantify this trajectory, analytic analysis provides significantly more insight and a means for faster calculation. Recently, an analytic analysis using homogeneous coordinates was published. The current work further develops this line of thought and compares the relative merits of using a homogeneous or a Cartesian coordinate system.
Intense steady state neutron source. The CNR reactor
Difilippo, F.C.; Moon, R.M.; Gambill, W.R.; Moon, R.M.; Primm, R.T. III; West, C.D.
1986-01-01
The Center for Neutron Research (CNR) has been proposed in response to the needs - neutron flux, spectrum, and experimental facilities - that have been identified through workshops, studies, and discussions by the neutron-scattering, isotope, and materials irradiation research communities. The CNR is a major new experimental facility consisting of a reactor-based steady state neutron source of unprecedented flux, together with extensive facilities and instruments for neutron scattering, isotope production, materials irradiation, and other areas of research.
MUTATION RATES OF BACTERIA IN STEADY STATE POPULATIONS
Fox, Maurice S.
1955-01-01
The breeder and the chemostat have been used to measure mutation rates for two mutations under a variety of steady state growth conditions. These rates have been found to be higher in complex medium than in minimal (F) medium. The effects of changes in nutritional conditions on these high rates have been described. In addition, the mutation rates at short generation times, in complex medium, have been shown to decrease with increasing generation time. PMID:13271726
Steady state equivalence among autocatalytic peroxidase-oxidase reactions.
Méndez-González, José; Femat, Ricardo
2016-12-14
Peroxidase-oxidase is an enzymatic reaction that can exhibit dynamical scenarios such as bistability, sustained oscillations, and Shilnikov chaos. In this work, we apply the chemical reaction network theory approach to find kinetic constants such that the associated mass action kinetics ordinary differential equations induced by three four dimensional structurally different enzymatic reaction systems can support the same steady states for several chemical species despite differences in their chemical nature.
Steady state equivalence among autocatalytic peroxidase-oxidase reactions
NASA Astrophysics Data System (ADS)
Méndez-González, José; Femat, Ricardo
2016-12-01
Peroxidase-oxidase is an enzymatic reaction that can exhibit dynamical scenarios such as bistability, sustained oscillations, and Shilnikov chaos. In this work, we apply the chemical reaction network theory approach to find kinetic constants such that the associated mass action kinetics ordinary differential equations induced by three four dimensional structurally different enzymatic reaction systems can support the same steady states for several chemical species despite differences in their chemical nature.
A correspondence principle for steady-state wave problems
NASA Technical Reports Server (NTRS)
Schmerr, L. W.
1976-01-01
A correspondence principle was developed for treating the steady state propagation of waves from sources moving along a plane surface or interface. This new principle allows one to obtain, in a unified manner, explicit solutions for any source velocity. To illustrate the correspondence principle in a particular case, the problem of a load moving at an arbitrary constant velocity along the surface of an elastic half-space is considered.
Multiple Color Stimulus Induced Steady State Visual Evoked Potentials
2007-11-02
MULTIPLE COLOR STIMULUS INDUCED STEADY STATE VISUAL EVOKED POTENTIALS M. Cheng, X. Gao, S. Gao, D. Xu Institute of Biomedical Engineering...characteristics of high SNR and effectiveness in short-term identification of evoked responses. In most of the SSVEP experiments, single high...frequency stimuli are used. To characterize the complex rhythms in SSVEP, a new multiple color stimulus pattern is proposed in this paper. FFT and
Multiple steady states for characteristic initial value problems
NASA Technical Reports Server (NTRS)
Salas, M. D.; Abarbanel, S.; Gottlieb, D.
1984-01-01
The time dependent, isentropic, quasi-one-dimensional equations of gas dynamics and other model equations are considered under the constraint of characteristic boundary conditions. Analysis of the time evolution shows how different initial data may lead to different steady states and how seemingly anamolous behavior of the solution may be resolved. Numerical experimentation using time consistent explicit algorithms verifies the conclusions of the analysis. The use of implicit schemes with very large time steps leads to erroneous results.
Transition of unsteady flows of evaporation to steady state
NASA Astrophysics Data System (ADS)
d'Almeida, Amah
2008-07-01
We investigate the half-space problem of evaporation and condensation in the scope of discrete kinetic theory. Exact solutions are found to the boundary value problem and the initial boundary value problems of the flow in the half space for a discrete velocity model. The results are used to analyze the transition of the unsteady solutions towards steady states. To cite this article: A. d'Almeida, C. R. Mecanique 336 (2008).
Steady-state superradiance with alkaline-earth-metal atoms
Meiser, D.; Holland, M. J.
2010-03-15
Alkaline-earth-metal-like atoms with ultranarrow transitions open the door to a new regime of cavity quantum electrodynamics. That regime is characterized by a critical photon number that is many orders of magnitude smaller than what can be achieved in conventional systems. We show that it is possible to achieve superradiance in steady state with such systems. We discuss the basic underlying mechanisms as well as the key experimental requirements.
Steady state magnetic field configurations for the earth's magnetotail
NASA Technical Reports Server (NTRS)
Hau, L.-N.; Wolf, R. A.; Voigt, G.-H.; Wu, C. C.
1989-01-01
A two-dimensional, force-balance magnetic field model is presented. The theoretical existence of a steady state magnetic field configuration that is force-balanced and consistent with slow, lossless, adiabatic, earthward convection within the limit of the ideal MHD is demonstrated. A numerical solution is obtained for a two-dimensional magnetosphere with a rectangular magnetopause and nonflaring tail. The results are consistent with the convection time sequences reported by Erickson (1985).
Adaptive control of unknown unstable steady states of dynamical systems.
Pyragas, K; Pyragas, V; Kiss, I Z; Hudson, J L
2004-08-01
A simple adaptive controller based on a low-pass filter to stabilize unstable steady states of dynamical systems is considered. The controller is reference-free; it does not require knowledge of the location of the fixed point in the phase space. A topological limitation similar to that of the delayed feedback controller is discussed. We show that the saddle-type steady states cannot be stabilized by using the conventional low-pass filter. The limitation can be overcome by using an unstable low-pass filter. The use of the controller is demonstrated for several physical models, including the pendulum driven by a constant torque, the Lorenz system, and an electrochemical oscillator. Linear and nonlinear analyses of the models are performed and the problem of the basins of attraction of the stabilized steady states is discussed. The robustness of the controller is demonstrated in experiments and numerical simulations with an electrochemical oscillator, the dissolution of nickel in sulfuric acid; a comparison of the effect of using direct and indirect variables in the control is made. With the use of the controller, all unstable phase-space objects are successfully reconstructed experimentally.
Cavitation modeling for steady-state CFD simulations
NASA Astrophysics Data System (ADS)
Hanimann, L.; Mangani, L.; Casartelli, E.; Widmer, M.
2016-11-01
Cavitation in hydraulic turbomachines is an important phenomenon to be considered for performance predictions. Correct analysis of the cavitation onset and its effect on the flow field while diminishing the pressure level need therefore to be investigated. Even if cavitation often appears as an unsteady phenomenon, the capability to compute it in a steady state formulation for the design and assessment phase in the product development process is very useful for the engineer. In the present paper the development and corresponding application of a steady state CFD solver is presented, based on the open source toolbox OpenFOAM®. In the first part a review of different cavitation models is presented. Adopting the mixture-type cavitation approach, various models are investigated and developed in a steady state CFD RANS solver. Particular attention is given to the coupling between cavitation and turbulence models as well as on the underlying numerical procedure, especially the integration in the pressure- correction step of pressure-based solvers, which plays an important role in the stability of the procedure. The performance of the proposed model is initially assessed on simple cases available in the open literature. In a second step results for different applications are presented, ranging from airfoils to pumps.
STEADY-STATE MODEL OF SOLAR WIND ELECTRONS REVISITED
Yoon, Peter H.; Kim, Sunjung; Choe, G. S.
2015-10-20
In a recent paper, Kim et al. put forth a steady-state model for the solar wind electrons. The model assumed local equilibrium between the halo electrons, characterized by an intermediate energy range, and the whistler-range fluctuations. The basic wave–particle interaction is assumed to be the cyclotron resonance. Similarly, it was assumed that a dynamical steady state is established between the highly energetic superhalo electrons and high-frequency Langmuir fluctuations. Comparisons with the measured solar wind electron velocity distribution function (VDF) during quiet times were also made, and reasonable agreements were obtained. In such a model, however, only the steady-state solution for the Fokker–Planck type of electron particle kinetic equation was considered. The present paper complements the previous analysis by considering both the steady-state particle and wave kinetic equations. It is shown that the model halo and superhalo electron VDFs, as well as the assumed wave intensity spectra for the whistler and Langmuir fluctuations, approximately satisfy the quasi-linear wave kinetic equations in an approximate sense, thus further validating the local equilibrium model constructed in the paper by Kim et al.
Steady state statistical correlations predict bistability in reaction motifs.
Chakravarty, Suchana; Barik, Debashis
2017-03-01
Various cellular decision making processes are regulated by bistable switches that take graded input signals and convert them to binary all-or-none responses. Traditionally, a bistable switch generated by a positive feedback loop is characterized either by a hysteretic signal response curve with two distinct signaling thresholds or by characterizing the bimodality of the response distribution in the bistable region. To identify the intrinsic bistability of a feedback regulated network, here we propose that bistability can be determined by correlating higher order moments and cumulants (≥2) of the joint steady state distributions of two components connected in a positive feedback loop. We performed stochastic simulations of four feedback regulated models with intrinsic bistability and we show that for a bistable switch with variation of the signal dose, the steady state variance vs. covariance adopts a signatory cusp-shaped curve. Further, we find that the (n + 1)th order cross-cumulant vs. nth order cross-cumulant adopts a closed loop structure for at least n = 3. We also propose that our method is capable of identifying systems without intrinsic bistability even though the system may show bimodality in the marginal response distribution. The proposed method can be used to analyze single cell protein data measured at steady state from experiments such as flow cytometry.
Addressable nanoelectrode membrane arrays: fabrication and steady-state behavior.
Zoski, Cynthia G; Yang, Nianjun; He, Peixin; Berdondini, Luca; Koudelka-Hep, Milena
2007-02-15
An addressable nanoelectrode membrane array (ANEMA) based on a Au-filled track-etched polycarbonate membrane was fabricated. The Au-filled membrane was secured to a lithographically fabricated addressable ultramicroelectrode (UME) array patterned with 25 regularly spaced (100 microm center to center spacing), 10 microm diameter recessed Pt UMEs to create 25 microregions of 10 microm diameter nanoelectrode ensembles (NEEs) on the membrane. The steady-state voltammetric behavior of 1.0 mM Ru(NH(3))(6)Cl(3) and 1.0 mM ferrocene methanol in 0.1 M KCl on each of the micro NEEs resulted in sigmoidal-shaped voltammograms which were reproducible across the ANEMA. This reproducibility of the steady-state current was attributed to the overlapping hemispherical diffusion layers at the Au-filled nanopores of each 10 microm diameter NEE of a ANEMA. The track-etched polycarbonate membranes were filled using a gold electroless deposition procedure into the 30 nm diameter pores in the membrane. Electrical connection between the Au-filled template array and the lithographic UME platform array was achieved by potentiostatic electrodeposition of Cu from an acidic copper solution into each of the 25 recessed Pt UMEs on the UME array platform. A multiplexer unit capable of addressing 64 individual micro NEEs on an ANEMA is described. ANEMAs have advantages of high reproducibility, facile fabrication, multitime reuse of lithographically fabricated UME arrays, and purely steady-state behavior.
Numerical computation of steady-state acoustic disturbances in flow
NASA Technical Reports Server (NTRS)
Watson, W. R.; Myers, M. K.
1992-01-01
Two time domain methods for computing two dimensional steady-state acoustic disturbances propagating through internal subsonic viscous flow fields in the presence of variable area are investigated. The first method solves the Navier-Stokes equations for the combined steady and acoustic field together and subtracts the steady flow to obtain the acoustic field. The second method solves a system of perturbation equations to obtain the acoustic disturbances, making use of a separate steady flow computation as input to the system. In each case the periodic steady-state acoustic fluctuations are obtained numerically on a supercomputer using a second order unsplit explicit MacCormack predictor-corrector method. Results show that the first method is not very effective for computing acoustic disturbances of even moderate amplitude. It appears that more accurate steady flow algorithms are required for this method to succeed. On the other hand, linear and nonlinear acoustic disturbances extracted from the perturbation approach are shown to exhibit expected behavior for the problems considered. It is also found that inflow boundary conditions for an equivalent uniform duct can be successfully applied to a nonuniform duct to obtain steady-state acoustic disturbances.
Nonequilibrium Steady State Thermodynamics and Fluctuations for Stochastic Systems
NASA Astrophysics Data System (ADS)
Taniguchi, Tooru; Cohen, E. G. D.
2008-02-01
We use the work done on and the heat removed from a system to maintain it in a nonequilibrium steady state for a thermodynamic-like description of such a system as well as of its fluctuations. Based on an extended Onsager-Machlup theory for nonequilibrium steady states we indicate two ambiguities, not present in an equilibrium state, in defining such work and heat: one due to a non-uniqueness of time-reversal procedures and another due to multiple possibilities to separate heat into work and an energy difference in nonequilibrium steady states. As a consequence, for such systems, the work and heat satisfy multiple versions of the first and second laws of thermodynamics as well as of their fluctuation theorems. Unique laws and relations appear only to be obtainable for concretely defined systems, using physical arguments to choose the relevant physical quantities. This is illustrated on a number of systems, including a Brownian particle in an electric field, a driven torsion pendulum, electric circuits and an energy transfer driven by a temperature difference.
Basin stability measure of different steady states in coupled oscillators
Rakshit, Sarbendu; Bera, Bidesh K.; Majhi, Soumen; Hens, Chittaranjan; Ghosh, Dibakar
2017-01-01
In this report, we investigate the stabilization of saddle fixed points in coupled oscillators where individual oscillators exhibit the saddle fixed points. The coupled oscillators may have two structurally different types of suppressed states, namely amplitude death and oscillation death. The stabilization of saddle equilibrium point refers to the amplitude death state where oscillations are ceased and all the oscillators converge to the single stable steady state via inverse pitchfork bifurcation. Due to multistability features of oscillation death states, linear stability theory fails to analyze the stability of such states analytically, so we quantify all the states by basin stability measurement which is an universal nonlocal nonlinear concept and it interplays with the volume of basins of attractions. We also observe multi-clustered oscillation death states in a random network and measure them using basin stability framework. To explore such phenomena we choose a network of coupled Duffing-Holmes and Lorenz oscillators which are interacting through mean-field coupling. We investigate how basin stability for different steady states depends on mean-field density and coupling strength. We also analytically derive stability conditions for different steady states and confirm by rigorous bifurcation analysis. PMID:28378760
Steady state kinetic studies of purified yeast plasma membrane proton-translocating ATPase.
Koland, J G; Hammes, G G
1986-05-05
The plasma membrane H+-ATPase from bakers' yeast was purified and reconstituted with phosphatidylserine. The steady state kinetics of ATP hydrolysis catalyzed by the H+-ATPase were studied over a wide range of Mg2+ and ATP concentrations. Whereas MgATP was the substrate hydrolyzed, excess concentrations of either Mg2+ or ATP were inhibitory. The dependence of the steady state initial velocity of ATP hydrolysis on the concentration of MgATP at a fixed concentration of Mg2+ was sigmoidal rather than hyperbolic. This precluded mechanisms involving only activation and inhibition by Mg2+ and competitive inhibition by ATP. Two alternative interpretations of these results are: 1) the enzyme possesses multiple catalytic sites which interact cooperatively; or 2) the enzyme can exist in multiple conformational states which catalyze MgATP hydrolysis by parallel pathways. The rate laws for both mechanisms are identical so that the two mechanisms cannot be distinguished on the basis of the kinetic data. The data are well fit by the rate law for these mechanisms with the inclusion of competitive inhibition by Mg2+ and ATP and an independent inhibition site for Mg2+.
Mitoenergetic Dysfunction Triggers a Rapid Compensatory Increase in Steady-State Glucose Flux
Liemburg-Apers, Dania C.; Schirris, Tom J.J.; Russel, Frans G.M.; Willems, Peter H.G.M.; Koopman, Werner J.H.
2015-01-01
ATP can be produced in the cytosol by glycolytic conversion of glucose (GLC) into pyruvate. The latter can be metabolized into lactate, which is released by the cell, or taken up by mitochondria to fuel ATP production by the tricarboxylic acid cycle and oxidative phosphorylation (OXPHOS) system. Altering the balance between glycolytic and mitochondrial ATP generation is crucial for cell survival during mitoenergetic dysfunction, which is observed in a large variety of human disorders including cancer. To gain insight into the kinetic properties of this adaptive mechanism we determined here how acute (30 min) inhibition of OXPHOS affected cytosolic GLC homeostasis. GLC dynamics were analyzed in single living C2C12 myoblasts expressing the fluorescent biosensor FLII12Pglu-700μδ6 (FLII). Following in situ FLII calibration, the kinetic properties of GLC uptake (V1) and GLC consumption (V2) were determined independently and used to construct a minimal mathematical model of cytosolic GLC dynamics. After validating the model, it was applied to quantitatively predict V1 and V2 at steady-state (i.e., when V1 = V2 = Vsteady-state) in the absence and presence of OXPHOS inhibitors. Integrating model predictions with experimental data on lactate production, cell volume, and O2 consumption revealed that glycolysis and mitochondria equally contribute to cellular ATP production in control myoblasts. Inhibition of OXPHOS induced a twofold increase in Vsteady-state and glycolytic ATP production flux. Both in the absence and presence of OXPHOS inhibitors, GLC was consumed at near maximal rates, meaning that GLC consumption is rate-limiting under steady-state conditions. Taken together, we demonstrate here that OXPHOS inhibition increases steady-state GLC uptake and consumption in C2C12 myoblasts. This activation fully compensates for the reduction in mitochondrial ATP production, thereby maintaining the balance between cellular ATP supply and demand. PMID:26445438
Pysz, Marybeth A.; Leontieva, Olga V.; Bateman, Nicholas W.; Uronis, Joshua M.; Curry, Kathryn J.; Threadgill, David W.; Janssen, Klaus-Peter; Robine, Sylvie; Velcich, Anna; Augenlicht, Leonard; Black, Adrian R.; Black, Jennifer D.
2009-01-01
Alterations in PKC isozyme expression and aberrant induction of cyclin D1 are early events in intestinal tumorigenesis. Previous studies have identified cyclin D1 as a major target in the antiproliferative effects of PKCα in non-transformed intestinal cells; however, a link between PKC signaling and cyclin D1 in colon cancer remained to be established. The current study further characterized PKC isozyme expression in intestinal neoplasms and explored the consequences of restoring PKCα or PKCδ in a panel of colon carcinoma cell lines. Consistent with patterns of PKC expression in primary tumors, PKCα and δ levels were generally reduced in colon carcinoma cell lines, PKCβII was elevated and PKCε showed variable expression, thus establishing the suitability of these models for analysis of PKC signaling. While colon cancer cells were insensitive to the effects of PKC agonists on cyclin D1 levels, restoration of PKCα downregulated cyclin D1 by two independent mechanisms. PKCα expression consistently (a) reduced steady-state levels of cyclin D1 by a novel transcriptional mechanism not previously seen in non-transformed cells, and (b) re-established the ability of PKC agonists to activate the translational repressor 4E-BP1 and inhibit cyclin D1 translation. In contrast, PKCδ had modest and variable effects on cyclin D1 steady state levels and failed to restore responsiveness to PKC agonists. Notably, PKCα expression blocked anchorage-independent growth in colon cancer cells via a mechanism partially dependent on cyclin D1 deficiency, while PKCδ had only minor effects. Loss of PKCα and effects of its re-expression were independent of the status of the APC/β-catenin signaling pathway or known genetic alterations, indicating that they are a general characteristic of colon tumors. Thus, PKCα is a potent negative regulator of cyclin D1 expression and anchorage-independent cell growth in colon tumor cells, findings that offer important perspectives on the
Posaconazole Plasma Concentrations on Days Three to Five Predict Steady-State Levels
Prattes, Jürgen; Duettmann, Wiebke
2016-01-01
Low posaconazole plasma concentrations (PPCs) have been associated with breakthrough invasive fungal infections. We assessed the correlation between pre-steady-state PPCs (obtained between days 3 and 5) and PPCs obtained during steady state in 48 patients with underlying hematological malignancies receiving posaconazole oral-solution prophylaxis. Pre-steady-state PPCs correlated significantly with PPCs obtained at steady state (Spearman r = 0.754; P < 0.001). Receiver operating characteristic (ROC) curve analysis of pre-steady-state PPCs revealed an area under the curve (AUC) of 0.884 (95% confidence interval [CI], 0.790 to 0.977) for predicting satisfactory PPCs at steady state. PMID:27324763
Mimicking Nonequilibrium Steady States with Time-Periodic Driving
NASA Astrophysics Data System (ADS)
Raz, O.; Subaşı, Y.; Jarzynski, C.
2016-04-01
Under static conditions, a system satisfying detailed balance generically relaxes to an equilibrium state in which there are no currents. To generate persistent currents, either detailed balance must be broken or the system must be driven in a time-dependent manner. A stationary system that violates detailed balance evolves to a nonequilibrium steady state (NESS) characterized by fixed currents. Conversely, a system that satisfies instantaneous detailed balance but is driven by the time-periodic variation of external parameters—also known as a stochastic pump (SP)—reaches a periodic state with nonvanishing currents. In both cases, these currents are maintained at the cost of entropy production. Are these two paradigmatic scenarios effectively equivalent? For discrete-state systems, we establish a mapping between nonequilibrium stationary states and stochastic pumps. Given a NESS characterized by a particular set of stationary probabilities, currents, and entropy production rates, we show how to construct a SP with exactly the same (time-averaged) values. The mapping works in the opposite direction as well. These results establish a proof of principle: They show that stochastic pumps are able to mimic the behavior of nonequilibrium steady states, and vice versa, within the theoretical framework of discrete-state stochastic thermodynamics. Nonequilibrium steady states and stochastic pumps are often used to model, respectively, biomolecular motors driven by chemical reactions and artificial molecular machines steered by the variation of external, macroscopic parameters. Our results loosely suggest that anything a biomolecular machine can do, an artificial molecular machine can do equally well. We illustrate this principle by showing that kinetic proofreading, a NESS mechanism that explains the low error rates in biochemical reactions, can be effectively mimicked by a constrained periodic driving.
Steady-state responses of a belt-drive dynamical system under dual excitations
NASA Astrophysics Data System (ADS)
Ding, Hu
2016-02-01
The stable steady-state periodic responses of a belt-drive system with a one-way clutch are studied. For the first time, the dynamical system is investigated under dual excitations. The system is simultaneously excited by the firing pulsations of the engine and the harmonic motion of the foundation. Nonlinear discrete-continuous equations are derived for coupling the transverse vibration of the belt spans and the rotations of the driving and driven pulleys and the accessory pulley. The nonlinear dynamics is studied under equal and multiple relations between the frequency of the firing pulsations and the frequency of the foundation motion. Furthermore, translating belt spans are modeled as axially moving strings. A set of nonlinear piecewise ordinary differential equations is achieved by using the Galerkin truncation. Under various relations between the excitation frequencies, the time histories of the dynamical system are numerically simulated based on the time discretization method. Furthermore, the stable steady-state periodic response curves are calculated based on the frequency sweep. Moreover, the convergence of the Galerkin truncation is examined. Numerical results demonstrate that the one-way clutch reduces the resonance amplitude of the rotations of the driven pulley and the accessory pulley. On the other hand, numerical examples prove that the resonance areas of the belt spans are decreased by eliminating the torque-transmitting in the opposite direction. With the increasing amplitude of the foundation excitation, the damping effect of the one-way clutch will be reduced. Furthermore, as the amplitude of the firing pulsations of the engine increases, the jumping phenomena in steady-state response curves of the belt-drive system with or without a one-way clutch both occur.
Typical pure nonequilibrium steady states and irreversibility for quantum transport.
Monnai, Takaaki; Yuasa, Kazuya
2016-07-01
It is known that each single typical pure state in an energy shell of a large isolated quantum system well represents a thermal equilibrium state of the system. We show that such typicality holds also for nonequilibrium steady states (NESS's). We consider a small quantum system coupled to multiple infinite reservoirs. In the long run, the total system reaches a unique NESS. We identify a large Hilbert space from which pure states of the system are to be sampled randomly and show that the typical pure states well describe the NESS. We also point out that the irreversible relaxation to the unique NESS is important to the typicality of the pure NESS's.
Stabilizing unstable steady states using multiple delay feedback control.
Ahlborn, Alexander; Parlitz, Ulrich
2004-12-31
Feedback control with different and independent delay times is introduced and shown to be an efficient method for stabilizing fixed points (equilibria) of dynamical systems. In comparison to other delay based chaos control methods multiple delay feedback control is superior for controlling steady states and works also for relatively large delay times (sometimes unavoidable in experiments due to system dead times). To demonstrate this approach for stabilizing unstable fixed points we present numerical simulations of Chua's circuit and a successful experimental application for stabilizing a chaotic frequency doubled Nd-doped yttrium aluminum garnet laser.
Nonequilibrium steady-state circulation and heat dissipation functional.
Qian, H
2001-08-01
A nonequilibrium steady-state (NESS), different from an equilibrium, is sustained by circular balance rather than detailed balance. The circular fluxes are driven by energy input and heat dissipation, accompanied by a positive entropy production. Based on a Master equation formalism for NESS, we show the circulation is intimately related to the recently studied Gallavotti-Cohen symmetry of heat dissipation functional, which in turn suggests a Boltzmann's formulalike relation between rate constants and energy in NESS. Expanding this unifying view on NESS to diffusion is discussed.
Steady-State-Preserving Simulation of Genetic Regulatory Systems
Hou, Xilin
2017-01-01
A novel family of exponential Runge-Kutta (expRK) methods are designed incorporating the stable steady-state structure of genetic regulatory systems. A natural and convenient approach to constructing new expRK methods on the base of traditional RK methods is provided. In the numerical integration of the one-gene, two-gene, and p53-mdm2 regulatory systems, the new expRK methods are shown to be more accurate than their prototype RK methods. Moreover, for nonstiff genetic regulatory systems, the expRK methods are more efficient than some traditional exponential RK integrators in the scientific literature. PMID:28203268
Thermodynamic formalism and linear response theory for nonequilibrium steady states.
Speck, Thomas
2016-08-01
We study the linear response in systems driven away from thermal equilibrium into a nonequilibrium steady state with nonvanishing entropy production rate. A simple derivation of a general response formula is presented under the condition that the generating function describes a transformation that (to lowest order) preserves normalization and thus describes a physical stochastic process. For Markov processes we explicitly construct the conjugate quantities and discuss their relation with known response formulas. Emphasis is put on the formal analogy with thermodynamic potentials and some consequences are discussed.
Steady State Vacuum Ultraviolet Exposure Facility With Automated Calibration Capability
NASA Technical Reports Server (NTRS)
Stueber, Thomas J.; Sechkar, Edward A.; Dever, Joyce A.; Banks, Bruce A.
2000-01-01
NASA Glenn Research Center at Lewis Field designed and developed a steady state vacuum ultraviolet automated (SSVUVa) facility with in situ VUV intensity calibration capability. The automated feature enables a constant accelerated VUV radiation exposure over long periods of testing without breaking vacuum. This test facility is designed to simultaneously accommodate four isolated radiation exposure tests within the SSVUVa vacuum chamber. Computer-control of the facility for long, term continuous operation also provides control and recording of thermocouple temperatures, periodic recording of VUV lamp intensity, and monitoring of vacuum facility status. This paper discusses the design and capabilities of the SSVUVa facility.
Quantum-classical correspondence in steady states of nonadiabatic systems
Fujii, Mikiya; Yamashita, Koichi
2015-12-31
We first present nonadiabatic path integral which is exact formulation of quantum dynamics in nonadiabatic systems. Then, by applying the stationary phase approximations to the nonadiabatic path integral, a semiclassical quantization condition, i.e., quantum-classical correspondence, for steady states of nonadiabatic systems is presented as a nonadiabatic trace formula. The present quantum-classical correspondence indicates that a set of primitive hopping periodic orbits, which are invariant under time evolution in the phase space of the slow degree of freedom, should be quantized. The semiclassical quantization is then applied to a simple nonadiabatic model and accurately reproduces exact quantum energy levels.
System studies for quasi-steady-state advanced physics tokamak
Reid, R.L.; Peng, Y.K.M.
1983-11-01
Parametric studies were conducted using the Fusion Engineering Design Center (FEDC) Tokamak Systems Code to investigate the impact of veriation in physics parameters and technology limits on the performance and cost of a low q/sub psi/, high beta, quasi-steady-state tokamak for the purpose of fusion engineering experimentation. The features and characteristics chosen from each study were embodied into a single Advanced Physics Tokamak design for which a self-consistent set of parameters was generated and a value of capital cost was estimated.
Steady State Creep of Zirconium at High and Intermediate Temperatures
Rosen, R.S.; Hayes, T.A.
2000-04-08
Creep of zirconium and zirconium alloys has been labeled ''anomalous.'' Researchers often report that zirconium and its alloys never reach true steady state creep and have stress exponents that continuously change with stress and temperature. Many varied interpretations have been offered explaining the creep behavior of zirconium. Some have suggested that creep is diffusion controlled, while others maintain that creep is dislocation glide controlled. Cumulative zirconium creep data will be presented based on an extensive literature review. An interpretation of results will be presented and compared to previous interpretations.
Steady-State Solution of a Flexible Wing
NASA Technical Reports Server (NTRS)
Karkehabadi, Reza; Chandra, Suresh; Krishnamurthy, Ramesh
1997-01-01
A fluid-structure interaction code, ENSAERO, has been used to compute the aerodynamic loads on a swept-tapered wing. The code has the capability of using Euler or Navier-Stokes equations. Both options have been used and compared in the present paper. In the calculation of the steady-state solution, we are interested in knowing how the flexibility of the wing influences the lift coefficients. If the results of a flexible wing are not affected by the flexibility of the wing significantly, one could consider the wing to be rigid and reduce the problem from fluid-structure interaction to a fluid problem.
Non-steady-state aerosol filtration in nanostructured fibrous media.
Przekop, Rafal; Gradoń, Leon
2011-06-28
The filtration of aerosol particles using composites of nano- and microsized fibrous structures is a promising method for the effective separation of nanoparticles from gases. A multi-scale physical system describing the flow pattern and particle deposition at a non-steady-state condition requires an advanced method of modelling. The combination of lattice Boltzmann and Brownian dynamics was used for analysis of the particle deposition pattern in a fibrous system. The dendritic structures of deposits for neutral and charged fibres and particles are present. The efficiency of deposition, deposit morphology, porosity and fractal dimension were calculated for a selected operational condition of the process.
Steady-state grain growth in UO{sub 2}
Galinari, C.M.; Lameiras, F.S.
1998-06-05
The authors have observed steady-state grain growth in sintered UO{sub 2} pellets of nuclear purity at 2,003 K under H{sub 2}. The behavior of the grain size distribution at different instants is consistent with the grain growth model proposed by one of the authors. The total number of grains was estimated using the Saltykov`s method, and the evolution is in accordance with the model proposed by Rhines and Craig. The parabolic growth law was observed for the mean intercept length with n = 0.4.
Linear modeling of steady-state behavioral dynamics.
Palya, William L; Walter, Donald; Kessel, Robert; Lucke, Robert
2002-01-01
The observed steady-state behavioral dynamics supported by unsignaled periods of reinforcement within repeating 2,000-s trials were modeled with a linear transfer function. These experiments employed improved schedule forms and analytical methods to improve the precision of the measured transfer function, compared to previous work. The refinements include both the use of multiple reinforcement periods that improve spectral coverage and averaging of independently determined transfer functions. A linear analysis was then used to predict behavior observed for three different test schedules. The fidelity of these predictions was determined. PMID:11831782
Pharmacokinetics of phase I nevirapine metabolites following a single dose and at steady state.
Fan-Havard, Patty; Liu, Zhongfa; Chou, Monidarin; Ling, Yonghua; Barrail-Tran, Aurélie; Haas, David W; Taburet, Anne-Marie
2013-05-01
Nevirapine is one of the most extensively prescribed antiretrovirals worldwide. The present analyses used data and specimens from two prior studies to characterize and compare plasma nevirapine phase I metabolite profiles following a single 200-mg oral dose of nevirapine in 10 HIV-negative African Americans and a steady-state 200-mg twice-daily dose in 10 HIV-infected Cambodians. Nevirapine was assayed by high-performance liquid chromatography (HPLC). The 2-, 3-, 8- and 12-hydroxy and 4-carboxy metabolites of nevirapine were assayed by liquid chromatography-tandem mass spectrometry (LC/MS/MS). Pharmacokinetic parameters were calculated by noncompartmental analysis. The metabolic index for each metabolite was defined as the ratio of the metabolite area under the concentration-time curve (AUC) to the nevirapine AUC. Every metabolite concentration was much less than the corresponding nevirapine concentration. The predominant metabolite after single dose and at steady state was 12-hydroxynevirapine. From single dose to steady state, the metabolic index increased for 3-hydroxynevirapine (P < 0.01) but decreased for 2-hydroxynevirapine (P < 0.001). The 3-hydroxynevirapine metabolic index was correlated with nevirapine apparent clearance (P < 0.001). These findings are consistent with induction of CYP2B6 (3-hydroxy metabolite) and a possible inhibition of CYP3A (2-hydroxy metabolite), although these are preliminary data. There were no such changes in metabolic indexes for 12-hydroxynevirapine or 4-carboxynevirapine. Two subjects with the CYP2B6 *6*6 genetic polymorphism had metabolic indexes in the same range as other subjects. These results suggest that nevirapine metabolite profiles change over time under the influence of enzyme induction, enzyme inhibition, and host genetics. Further work is warranted to elucidate nevirapine biotransformation pathways and implications for drug efficacy and toxicity.
Steady-state operation of spheromaks by inductive techniques
Janos, A.
1984-04-01
A method to maintain a steady-state spheromak configuration inductively using the S-1 Spheromak device is described. The S-1 Spheromak formation apparatus can be utilized to inject magnetic helicity continuously (C.W., not pulsed or D.C.) into the spheromak configuration after equilibrium is achieved in the linked mode of operation. Oscillation of both poloidal- and toroidal-field currents in the flux core (psi-phi Pumping), with proper phasing, injects a net time-averaged helicity into the plasma. Steady-state maintenance relies on flux conversion, which has been earlier identified. Relevant experimental data from the operation of S-1 are described. Helicity flow has been measured and the proposed injection scheme simulated. In a reasonable time practical voltages and frequencies can inject an amount of helicity comparable to that in the initial plasma. Plasma currents can be maintained or increased. This pumping technique is similar to F-THETA Pumping of a Reversed-Field-Pinch but is applied to this inverse-pinch formation.
Steady-State ALPS for Real-Valued Problems
NASA Technical Reports Server (NTRS)
Hornby, Gregory S.
2009-01-01
The two objectives of this paper are to describe a steady-state version of the Age-Layered Population Structure (ALPS) Evolutionary Algorithm (EA) and to compare it against other GAs on real-valued problems. Motivation for this work comes from our previous success in demonstrating that a generational version of ALPS greatly improves search performance on a Genetic Programming problem. In making steady-state ALPS some modifications were made to the method for calculating age and the method for moving individuals up layers. To demonstrate that ALPS works well on real-valued problems we compare it against CMA-ES and Differential Evolution (DE) on five challenging, real-valued functions and on one real-world problem. While CMA-ES and DE outperform ALPS on the two unimodal test functions, ALPS is much better on the three multimodal test problems and on the real-world problem. Further examination shows that, unlike the other GAs, ALPS maintains a genotypically diverse population throughout the entire search process. These findings strongly suggest that the ALPS paradigm is better able to avoid premature convergence then the other GAs.
Ecological Implications of Steady State and Nonsteady State Bioaccumulation Models.
McLeod, Anne M; Paterson, Gordon; Drouillard, Ken G; Haffner, G Douglas
2016-10-18
Accurate predictions on the bioaccumulation of persistent organic pollutants (POPs) are critical for hazard and ecosystem health assessments. Aquatic systems are influenced by multiple stressors including climate change and species invasions and it is important to be able to predict variability in POP concentrations in changing environments. Current steady state bioaccumulation models simplify POP bioaccumulation dynamics, assuming that pollutant uptake and elimination processes become balanced over an organism's lifespan. These models do not consider the complexity of dynamic variables such as temperature and growth rates which are known to have the potential to regulate bioaccumulation in aquatic organisms. We contrast a steady state (SS) bioaccumulation model with a dynamic nonsteady state (NSS) model and a no elimination (NE) model. We demonstrate that both the NSS and the NE models are superior at predicting both average concentrations as well as variation in POPs among individuals. This comparison demonstrates that temporal drivers, such as environmental fluctuations in temperature, growth dynamics, and modified food-web structure strongly determine contaminant concentrations and variability in a changing environment. These results support the recommendation of the future development of more dynamic, nonsteady state bioaccumulation models to predict hazard and risk assessments in the Anthropocene.
New models for fast steady state magnetic reconnection
NASA Technical Reports Server (NTRS)
Priest, E. R.; Forbes, T. G.
1986-01-01
A new unified family of models for incompressible, steady-state magnetic reconnection in a finite region is presented. The models are obtained by expanding in powers of the Alfven Mach number and may be used to elucidate some of the puzzling properties of numerical experiments on reconnection which are not present in the classical models. The conditions imposed on the inflow boundary of the finite region determine which member of the family occurs. Petscheklien and Sonnerup like solutions are particular members. The Sonneruplike regime is a special case of a weak slow mode expansion in the inflow region, and it separates two classes of members with reversed currents. The Petscheklike regime is a singular case of a weak fast mode expansion, and it separates the hybrid regime from a regime of slow mode compressions. Care should be taken in deciding which type of reconnection is operating in a numerical experiment. Indeed, no experiment to date has used boundary conditions appropriate for demonstrating steady state Petschek reconnection.
Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism
Fleming, R.M.T.; Thiele, I.; Provan, G.; Nasheuer, H.P.
2010-01-01
The quantitative analysis of biochemical reactions and metabolites is at frontier of biological sciences. The recent availability of high-throughput technology data sets in biology has paved the way for new modelling approaches at various levels of complexity including the metabolome of a cell or an organism. Understanding the metabolism of a single cell and multi-cell organism will provide the knowledge for the rational design of growth conditions to produce commercially valuable reagents in biotechnology. Here, we demonstrate how equations representing steady state mass conservation, energy conservation, the second law of thermodynamics, and reversible enzyme kinetics can be formulated as a single system of linear equalities and inequalities, in addition to linear equalities on exponential variables. Even though the feasible set is non-convex, the reformulation is exact and amenable to large-scale numerical analysis, a prerequisite for computationally feasible genome scale modelling. Integrating flux, concentration and kinetic variables in a unified constraint-based formulation is aimed at increasing the quantitative predictive capacity of flux balance analysis. Incorporation of experimental and theoretical bounds on thermodynamic and kinetic variables ensures that the predicted steady state fluxes are both thermodynamically and biochemically feasible. The resulting in silico predictions are tested against fluxomic data for central metabolism in E. coli and compare favourably with in silico prediction by flux balance analysis. PMID:20230840
Zonal Flow Growth Rates: Modulational Instability vs Statistical Steady States.
NASA Astrophysics Data System (ADS)
Krommes, J. A.; Kolesnikov, R. A.
2002-11-01
The nonlinear growth rate of zonal flows has been the subject of various investigations. The calculations can be grouped into two major classes: those based on modulational instability of a fixed pump wave;(L. Chen et al., Phys. Plasmas 7), 3129 (2000); P. N. Guzdar et al., Phys. Rev. Lett. 87, 015001 (2001); C. N. Lashmore-Davies et al., Phys. Plasmas 8, 5121 (2001). and those employing statistical formalism to describe a self-consistent, energy-conserving steady state.(J. A. Krommes and C.--B. Kim, Phys. Rev. E 62), 8508 (2000), and references therein. The results from these two approaches do not necessarily agree either in their dependence on parameters like the plasma pressure β, on the threshold for instability, or even, in some cases, on the sign. The reasons for such disagreements are isolated, and it is shown to what extent the steady-state statistical approach can be reconciled with a generic modulational instability calculation. Generalizations of the statistical formalism to the multifield systems appropriate for finite β are described. Specific calculations based on model systems are used to illustrate the general arguments.
Modeling steady-state methanogenic degradation of phenols in groundwater
Bekins, Barbara A.; Godsy, E. Michael; Goerlitz, Donald F.
1993-01-01
Field and microcosm observations of methanogenic phenolic compound degradation indicate that Monod kinetics governs the substrate disappearance but overestimates the observed biomass. In this paper we present modeling results from an ongoing multidisciplinary study of methanogenic biodegradation of phenolic compounds in a sand and gravel aquifer contaminated by chemicals and wastes used in wood treatment. Field disappearance rates of four phenols match those determined in batch microcosm studies previously performed by E.M. Godsy and coworkers. The degradation process appears to be at steady-state because even after a sustained influx over several decades, the contaminants still are disappearing in transport downgradient. The existence of a steady-state degradation profile of each substrate together with a low biomass density in the aquifer indicate that the bacteria population is exhibiting no net growth. This may be due to the oligotrophic nature of the biomass population in which utilization and growth are approximately independent of concentration for most of the concentration range. Thus a constant growth rate should exist over much of the contaminated area which may in turn be balanced by an unusually high decay or maintenance rate due to hostile conditions or predation.
Steady-state wear and friction in boundary lubrication studies
NASA Technical Reports Server (NTRS)
Loomis, W. R.; Jones, W. R., Jr.
1980-01-01
A friction and wear study was made at 20 C to obtain improved reproducibility and reliability in boundary lubrication testing. Ester-base and C-ether-base fluids were used to lubricate a pure iron rider in sliding contact with a rotating M-50 steel disk in a friction and wear apparatus. Conditions included loads of 1/2 and 1 kg and sliding velocities of 3.6 to 18.2 m/min in a dry air atmosphere and stepwise time intervals from 1 to 250 min for wear measurements. The wear rate results were compared with those from previous studies where a single 25 min test period was used. Satisfactory test conditions for studying friction and wear in boundary lubrication for this apparatus were found to be 1 kg load; sliding velocities of 7.1 to 9.1 m/min (50 rpm disk speed); and use of a time stepwise test procedure. Highly reproducible steady-state wear rates and steady-state friction coefficients were determined under boundary conditions. Wear rates and coefficients of friction were constant following initially high values during run-in periods.
2005-12-01
choice of a steady state control is completely independent from the choice of a stabilizing control law. This separation is key for the methods we will...develop for steady state optimization in later sections. Combining the steady state with the stabilizing control , we can express the control law as u...for stabilizing control and optimization methods for steady state control, both unconstrained and constrained, we were able to produce promising results
40 CFR 86.1362-2010 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2012 CFR
2012-07-01
... Torque(percent) 2 3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition. 2a Steady-state 173 A 100 2b Transition 20 Linear Transition Linear Transition. 3a Steady-state 219 B 50 3b Transition 20 B Linear Transition. 4a Steady-state 217 B 75 4b Transition 20 Linear...
Zhang, Z Y; VanEtten, R L
1991-01-25
The complete time course of the hydrolysis of p-nitrophenyl phosphate catalyzed by the low molecular weight (acid) phosphotyrosyl protein phosphatase from bovine heart was elucidated and analyzed in detail. Burst titration kinetics were demonstrated for the first time with this class of enzyme. At pH 7.0, 4.5 degrees C, a transient pre-steady-state "burst" of p-nitrophenol was formed with a rate constant of 48 s-1. The burst was effectively stoichiometric and corresponded to a single enzyme active site/molecule. The burst was followed by a slow steady-state turnover of the phosphoenzyme intermediate with a rate constant of 1.2 s-1. Product inhibition studies indicated an ordered uni-bi kinetic scheme for the hydrolysis. Partition experiments conducted for several substrates revealed a constant product ratio. Vmax was constant for these substrates, and the overall rate of hydrolysis was increased greatly in the presence of alcohol acceptors. An enzyme-catalyzed 18O exchange between inorganic phosphate and water was detected and occurred with kcat = 4.47 x 10(-3) s-1 at pH 5.0, 37 degrees C. These results were all consistent with the existence of a phosphoenzyme intermediate in the catalytic pathway and with the breakdown of the intermediate being the rate-limiting step. The true Michaelis binding constant Ks = 6.0 mM, the apparent Km = 0.38 mM, and the rate constants for phosphorylation (k2 = 540 s-1) and dephosphorylation (k3 = 36.5 s-1) were determined under steady-state conditions with p-nitrophenyl phosphate at pH 5.0 and 37 degrees C in the presence of phosphate acceptors. The energies of activation for the enzyme-catalyzed hydrolysis at pH 5.0 and 7.0 were 13.6 and 14.1 kcal/mol, respectively. The activation energy for the enzyme-catalyzed medium 18O exchange between phosphate and water was 20.2 kcal/mol. Using the available equilibrium and rate constants, an energetic diagram was constructed for the enzyme-catalyzed reaction.
40 CFR Appendix II to Part 1042 - Steady-State Duty Cycles
Code of Federal Regulations, 2014 CFR
2014-07-01
...%. 1bTransition 20 Linear transition Linear transition in torque. 2aSteady-state 166 63% 25%. 2bTransition 20 Linear transition Linear transition in torque. 3aSteady-state 570 91% 75%. 3bTransition 20 Linear transition Linear transition in torque. 4aSteady-state 175 80% 50%. 1 Speed terms are defined...
40 CFR Appendix II to Part 1042 - Steady-State Duty Cycles
Code of Federal Regulations, 2010 CFR
2010-07-01
...%. 1bTransition 20 Linear transition Linear transition in torque. 2aSteady-state 166 63% 25%. 2bTransition 20 Linear transition Linear transition in torque. 3aSteady-state 570 91% 75%. 3bTransition 20 Linear transition Linear transition in torque. 4aSteady-state 175 80% 50%. 1 Speed terms are defined...
40 CFR Appendix II to Part 1042 - Steady-State Duty Cycles
Code of Federal Regulations, 2013 CFR
2013-07-01
...%. 1bTransition 20 Linear transition Linear transition in torque. 2aSteady-state 166 63% 25%. 2bTransition 20 Linear transition Linear transition in torque. 3aSteady-state 570 91% 75%. 3bTransition 20 Linear transition Linear transition in torque. 4aSteady-state 175 80% 50%. 1 Speed terms are defined...
NASA Lewis Steady-State Heat Pipe Code Architecture
NASA Technical Reports Server (NTRS)
Mi, Ye; Tower, Leonard K.
2013-01-01
NASA Glenn Research Center (GRC) has developed the LERCHP code. The PC-based LERCHP code can be used to predict the steady-state performance of heat pipes, including the determination of operating temperature and operating limits which might be encountered under specified conditions. The code contains a vapor flow algorithm which incorporates vapor compressibility and axially varying heat input. For the liquid flow in the wick, Darcy s formula is employed. Thermal boundary conditions and geometric structures can be defined through an interactive input interface. A variety of fluid and material options as well as user defined options can be chosen for the working fluid, wick, and pipe materials. This report documents the current effort at GRC to update the LERCHP code for operating in a Microsoft Windows (Microsoft Corporation) environment. A detailed analysis of the model is presented. The programming architecture for the numerical calculations is explained and flowcharts of the key subroutines are given
[Auditory steady-state responses--the state of art].
Szymańska, Anna; Gryczyński, Maciej; Pajor, Anna
2010-01-01
The auditory steady-state responses (ASSR) is quite a new method of electrophysiological threshold estimation with no clinical standards. It was the aim of this study to review practical and theoretical thesis of ASSR and mention recent recommendations and achievements of this technique. The most common application of ASSR is diagnosis of hearing loss in children together with ABR test. In this paper we mentioned information about influence of physiological factors (age, sex, state of arousal, handedness) and type of recording technique (electrodes placement, air and bone stimulation, occlusion effect, amplitude and frequency stimulation, multiple or single frequency stimulation, dichotic and monotic recording technique and type of hearing loss) on ASSR. We conclude that putting ASSR in clinical use as an standardized method it is necessary to do research with numerous groups of patients using the same equipment and parameters of tests.
Characterization of a class of stellarator steady states
Weitzner, Harold
2011-01-15
A stellarator steady state is obtained for a specific class of magnetic fields by a formal expansion in the small Larmor radius parameters of the coupled ion-electron Fokker-Planck equations. A system of relatively simple ordinary differential equations is given to determine the plasma profile functions, the number density, the temperature, and the electrostatic potential. A particular low collisionality ordering is used. The magnetic field is assumed to have stellarator symmetry of N periods in the toroidal direction and is approximated by a closed magnetic line configuration with rotational transform N/R. The magnetic field is nearly quasisymmetric. The chosen magnetic field also includes a small additional component leading to a configuration without closed lines or closed flux surfaces. The theoretical logic behind this choice of magnetic fields is also presented.
Steady-state magma discharge at Etna 1971-81
NASA Technical Reports Server (NTRS)
Wadge, G.; Guest, J. E.
1981-01-01
Throughout the past decade Mount Etna has been in almost continuous activity and even during periods of repose incandescent lava has often been visible in at least one of the summit vents. Using observations by Italian, British and French volcanological teams, the volumes of lava produced by each eruption from 1971 to July 1981 have been estimated. The computed output of magma for this period approximates to a rate of 0.7 cu m/s. This is compared with the output rate estimates for Etna's historic past. The steady-state nature of the output during the past decade has implications for the interpretation of the volcano's internal plumbing and the petrology of its lavas, and the assumption that this state will be maintained allows a discussion of the timing and magnitude of future eruptions.
Extending the definition of entropy to nonequilibrium steady states
Ruelle, David P.
2003-01-01
We study the nonequilibrium statistical mechanics of a finite classical system subjected to nongradient forces ξ and maintained at fixed kinetic energy (Hoover–Evans isokinetic thermostat). We assume that the microscopic dynamics is sufficiently chaotic (Gallavotti–Cohen chaotic hypothesis) and that there is a natural nonequilibrium steady-state ρξ. When ξ is replaced by ξ + δξ, one can compute the change δρ of ρξ (linear response) and define an entropy change δS based on energy considerations. When ξ is varied around a loop, the total change of S need not vanish: Outside of equilibrium the entropy has curvature. However, at equilibrium (i.e., if ξ is a gradient) we show that the curvature is zero, and that the entropy S(ξ + δξ) near equilibrium is well defined to second order in δξ. PMID:12629215
Extending the definition of entropy to nonequilibrium steady states.
Ruelle, David P
2003-03-18
We study the nonequilibrium statistical mechanics of a finite classical system subjected to nongradient forces xi and maintained at fixed kinetic energy (Hoover-Evans isokinetic thermostat). We assume that the microscopic dynamics is sufficiently chaotic (Gallavotti-Cohen chaotic hypothesis) and that there is a natural nonequilibrium steady-state rho(xi). When xi is replaced by xi + deltaxi, one can compute the change deltarho of rho(xi) (linear response) and define an entropy change deltaS based on energy considerations. When xi is varied around a loop, the total change of S need not vanish: Outside of equilibrium the entropy has curvature. However, at equilibrium (i.e., if xi is a gradient) we show that the curvature is zero, and that the entropy S(xi + deltaxi) near equilibrium is well defined to second order in deltaxi.
Steady state asymmetric planetary electrical induction. [by solar wind
NASA Technical Reports Server (NTRS)
Horning, B. L.; Schubert, G.
1974-01-01
An analytic solution is presented for the steady state electric and magnetic fields induced by the motional electric field of the solar wind in the atmosphere or interior of a planet that is asymmetrically surrounded by solar wind plasma. The electrically conducting ionosphere or interior must be in direct electrical contact with the solar wind over the day side of the planet. The conducting region of the planet is modeled by a sphere or a spherical shell of arbitrarily stratified electrical conductivity. A monoconducting cylindrical cavity is assumed to extend downstream on the night side of the planet. The solar wind is assumed to be highly conducting so that the induced fields are confined to the planet and cavity. Induced currents close as sheet currents at the solar wind-cavity and solar wind-planet interfaces. Numerical evaluations of the analytic formulas are carried out for a uniformly conducting spherical model.
Entropy Production and Non-Equilibrium Steady States
NASA Astrophysics Data System (ADS)
Suzuki, Masuo
2013-01-01
The long-term issue of entropy production in transport phenomena is solved by separating the symmetry of the non-equilibrium density matrix ρ(t) in the von Neumann equation, as ρ(t) = ρs(t) + ρa(t) with the symmetric part ρs(t) and antisymmetric part ρa(t). The irreversible entropy production (dS/dt)irr is given in M. Suzuki, Physica A 390(2011)1904 by (dS/dt)irr = Tr( {H}(dρ s{(t)/dt))}/T for the Hamiltonian {H} of the relevant system. The general formulation of the extended von Neumann equation with energy supply and heat extraction is reviewed from the author's paper (M. S.,Physica A391(2012)1074). irreversibility; entropy production; transport phenomena; electric conduction; thermal conduction; linear response; Kubo formula; steady state; non-equilibrium density matrix; energy supply; symmetry-separated von Neumann equation; unboundedness.
Dust remobilization in fusion plasmas under steady state conditions
NASA Astrophysics Data System (ADS)
Tolias, P.; Ratynskaia, S.; De Angeli, M.; De Temmerman, G.; Ripamonti, D.; Riva, G.; Bykov, I.; Shalpegin, A.; Vignitchouk, L.; Brochard, F.; Bystrov, K.; Bardin, S.; Litnovsky, A.
2016-02-01
The first combined experimental and theoretical studies of dust remobilization by plasma forces are reported. The main theoretical aspects of remobilization in fusion devices under steady state conditions are analyzed. In particular, the dominant role of adhesive forces is highlighted and generic remobilization conditions—direct lift-up, sliding, rolling—are formulated. A novel experimental technique is proposed, based on controlled adhesion of dust grains on tungsten samples combined with detailed mapping of the dust deposition profile prior and post plasma exposure. Proof-of-principle experiments in the TEXTOR tokamak and the EXTRAP-T2R reversed-field pinch are presented. The versatile environment of the linear device Pilot-PSI allowed for experiments with different magnetic field topologies and varying plasma conditions that were complemented with camera observations.
Modelling of pulsed and steady-state DEMO scenarios
NASA Astrophysics Data System (ADS)
Giruzzi, G.; Artaud, J. F.; Baruzzo, M.; Bolzonella, T.; Fable, E.; Garzotti, L.; Ivanova-Stanik, I.; Kemp, R.; King, D. B.; Schneider, M.; Stankiewicz, R.; Stępniewski, W.; Vincenzi, P.; Ward, D.; Zagórski, R.
2015-07-01
Scenario modelling for the demonstration fusion reactor (DEMO) has been carried out using a variety of simulation codes. Two DEMO concepts have been analysed: a pulsed tokamak, characterized by rather conventional physics and technology assumptions (DEMO1) and a steady-state tokamak, with moderately advanced physics and technology assumptions (DEMO2). Sensitivity to impurity concentrations, radiation, and heat transport models has been investigated. For DEMO2, the impact of current driven non-inductively by neutral beams has been studied by full Monte Carlo simulations of the fast ion distribution. The results obtained are a part of a more extensive research and development (R&D) effort carried out in the EU in order to develop a viable option for a DEMO reactor, to be adopted after ITER for fusion energy research.
Steady-State Density Functional Theory for Finite Bias Conductances.
Stefanucci, G; Kurth, S
2015-12-09
In the framework of density functional theory, a formalism to describe electronic transport in the steady state is proposed which uses the density on the junction and the steady current as basic variables. We prove that, in a finite window around zero bias, there is a one-to-one map between the basic variables and both local potential on as well as bias across the junction. The resulting Kohn-Sham system features two exchange-correlation (xc) potentials, a local xc potential, and an xc contribution to the bias. For weakly coupled junctions the xc potentials exhibit steps in the density-current plane which are shown to be crucial to describe the Coulomb blockade diamonds. At small currents these steps emerge as the equilibrium xc discontinuity bifurcates. The formalism is applied to a model benzene junction, finding perfect agreement with the orthodox theory of Coulomb blockade.
Steady-state plasma transition in the Venus ionosheath
NASA Technical Reports Server (NTRS)
Perez-De-tejada, H.; Intriligator, D. S.; Strangeway, R. J.
1991-01-01
The results of an extended analysis of the plasma and electric field data of the Pioneer Venus Orbiter (PVO) are presented. The persistent presence of a plasma transition embedded in the flanks of the Venus ionosheath between the bow shock and the ionopause is reported. This transition is identified by the repeated presence of characteristic bursts in the 30 kHz channel of the electric field detector of the PVO. The observed electric field signals coincide with the onset of different plasma conditions in the inner ionosheath where more rarified plasma fluxes are measured. The repeated identification of this intermediate ionosheath transition in the PVO data indicates that it is present as a steady state feature of the Venus plasma environment. The distribution of PVO orbits in which the transition is observed suggests that it is more favorably detected in the vicinity of and downstream from the terminator.
Locating CVBEM collocation points for steady state heat transfer problems
Hromadka, T.V.
1985-01-01
The Complex Variable Boundary Element Method or CVBEM provides a highly accurate means of developing numerical solutions to steady state two-dimensional heat transfer problems. The numerical approach exactly solves the Laplace equation and satisfies the boundary conditions at specified points on the boundary by means of collocation. The accuracy of the approximation depends upon the nodal point distribution specified by the numerical analyst. In order to develop subsequent, refined approximation functions, four techniques for selecting additional collocation points are presented. The techniques are compared as to the governing theory, representation of the error of approximation on the problem boundary, the computational costs, and the ease of use by the numerical analyst. ?? 1985.
A Steady-state Trio for Bretherton Equation
NASA Astrophysics Data System (ADS)
Niu, Zhao; Liu, Zeng; Cui, Jifeng
2016-12-01
To investigate if steady-state resonant solution exist for any system of weakly interacting waves in a dispersive medium, a trio is considered in the Bretherton equation based on the homotopy analysis method (HAM). Time-independent spectrum was found when all components were travelling in the same direction. Within the trio, the amplitude of longer component is larger than that of shorter one. As the difference of wave number between components in trio increases or the nonlinearity of whole system increases, the amplitudes of all components tends to increase simultaneously. These findings are helpful to enrich and deepen our understanding about resonant solutions in any dispersive medium, especially for a two-dimensional scenario.
Relativistic hydrodynamics and non-equilibrium steady states
NASA Astrophysics Data System (ADS)
Spillane, Michael; Herzog, Christopher P.
2016-10-01
We review recent interest in the relativistic Riemann problem as a method for generating a non-equilibrium steady state. In the version of the problem under consideration, the initial conditions consist of a planar interface between two halves of a system held at different temperatures in a hydrodynamic regime. The new double shock solutions are in contrast with older solutions that involve one shock and one rarefaction wave. We use numerical simulations to show that the older solutions are preferred. Briefly we discuss the effects of a conserved charge. Finally, we discuss deforming the relativistic equations with a nonlinear term and how that deformation affects the temperature and velocity in the region connecting the asymptotic fluids.
Transient and steady state modelling of a coupled WECS
NASA Astrophysics Data System (ADS)
Nathan, G. K.; Tan, J. K.
The paper presents a method for simulation of a wind turbine using a dc motor. The armature and field voltages of the dc motor are independently regulated to obtain torque-speed characteristics which correspond to those of a wind turbine at different wind speeds. The mass moment of inertia of the wind turbine is represented by adding a rotating mass to a parallel shaft which is positively coupled to the motor shaft. To verify the method of simulation, an American multiblade wind turbine is chosen, loaded by coupling to a centrifugal pump. Using the principle of conservation of energy and characteristics of both constituent units, two mathematical models are proposed: one for steady state operation and another for the transient state. The close comparison between the theoretical and the experimental results validates the proposed models and the method of simulation. The experimental method is described and the results of the experimental and theoretical investigation are presented.
Petri nets for steady state analysis of metabolic systems.
Voss, Klaus; Heiner, Monika; Koch, Ina
2011-01-01
Computer assisted analysis and simulation of biochemical pathways can improve the understanding of the structure and the dynamics of cell processes considerably. The construction and quantitative analysis of kinetic models is often impeded by the lack of reliable data. However, as the topological structure of biochemical systems can be regarded to remain constant in time, a qualitative analysis of a pathway model was shown to be quite promising as it can render a lot of useful knowledge, e. g., about its structural invariants. The topic of this paper are pathways whose substances have reached a dynamic concentration equilibrium (steady state). It is argued that appreciated tools from biochemistry and also low-level Petri nets can yield only part of the desired results, whereas executable high-level net models lead to a number of valuable additional insights by combining symbolic analysis and simulation.
Steady state analysis of metabolic pathways using Petri nets.
Voss, Klaus; Heiner, Monika; Koch, Ina
2003-01-01
Computer assisted analysis and simulation of biochemical pathways can improve the understanding of the structure and the dynamics of cell processes considerably. The construction and quantitative analysis of kinetic models is often impeded by the lack of reliable data. However, as the topological structure of biochemical systems can be regarded to remain constant in time, a qualitative analysis of a pathway model was shown to be quite promising as it can render a lot of useful knowledge, e. g., about its structural invariants. The topic of this paper are pathways whose substances have reached a dynamic concentration equilibrium (steady state). It is argued that appreciated tools from biochemistry and also low-level Petri nets can yield only part of the desired results, whereas executable high-level net models lead to a number of valuable additional insights by combining symbolic analysis and simulation.
Steady-state thermodynamics for population growth in fluctuating environments
NASA Astrophysics Data System (ADS)
Sughiyama, Yuki; Kobayashi, Tetsuya J.
2017-01-01
We report that population dynamics in fluctuating environments is characterized by a mathematically equivalent structure to steady-state thermodynamics. By employing the structure, population growth in fluctuating environments is decomposed into housekeeping and excess parts. The housekeeping part represents the integral of the stationary growth rate for each condition during a history of the environmental change. The excess part accounts for the excess growth induced by environmental fluctuations. Focusing on the excess growth, we obtain a Clausius inequality, which gives the upper bound of the excess growth. The equality is shown to be achieved in quasistatic environmental changes. We also clarify that this bound can be evaluated by the "lineage fitness", which is an experimentally observable quantity.
A mathematical model of pan evaporation under steady state conditions
NASA Astrophysics Data System (ADS)
Lim, Wee Ho; Roderick, Michael L.; Farquhar, Graham D.
2016-09-01
In the context of changing climate, global pan evaporation records have shown a spatially-averaged trend of ∼ -2 to ∼ -3 mm a-2 over the past 30-50 years. This global phenomenon has motivated the development of the "PenPan" model (Rotstayn et al., 2006). However, the original PenPan model has yet to receive an independent experimental evaluation. Hence, we constructed an instrumented US Class A pan at Canberra Airport (Australia) and monitored it over a three-year period (2007-2010) to uncover the physics of pan evaporation under non-steady state conditions. The experimental investigations of pan evaporation enabled theoretical formulation and parameterisation of the aerodynamic function considering the wind, properties of air and (with or without) the bird guard effect. The energy balance investigation allowed for detailed formulation of the short- and long-wave radiation associated with the albedos and the emissivities of the pan water surface and the pan wall. Here, we synthesise and generalise those earlier works to develop a new model called the "PenPan-V2" model for application under steady state conditions (i.e., uses a monthly time step). Two versions (PenPan-V2C and PenPan-V2S) are tested using pan evaporation data available across the Australian continent. Both versions outperformed the original PenPan model with better representation of both the evaporation rate and the underlying physics of a US Class A pan. The results show the improved solar geometry related calculations (e.g., albedo, area) for the pan system led to a clear improvement in representing the seasonal cycle of pan evaporation. For general applications, the PenPan-V2S is simpler and suited for applications including an evaluation of long-term trends in pan evaporation.
Steady-state spectroscopy of new biological probes
NASA Astrophysics Data System (ADS)
Abou-Zied, Osama K.
2007-02-01
The steady state absorption and fluorescence spectroscopy of 2-(2'-hydroxyphenyl)benzoxazole (HBO) and (2,2'-bipyridine)-3,3'-diol (BP(OH) II) were studied here free in solution and in human serum albumin (HSA) in order to test their applicability as new biological probes. HBO and BP(OH) II are known to undergo intramolecular proton transfers in the excited state. Their absorption and fluorescence spectra are sensitive to environmental change from hydrophilic to hydrophobic, thus allowing the opportunity to use them as environment-sensitive probes. The effect of water on the steady state spectra of the two molecules also shows unique features which may position them as water sensors in biological systems. For HBO in buffer, fluorescence is only due to the syn-keto tautomer, whereas in HSA the fluorescence is due to four species in equilibrium in the excited state (the syn-keto tautomer, the anti-enol tautomer, the solvated syn-enol tautomer, and the anion species of HBO). Analysis of the fluorescence spectra of HBO in HSA indicates that HBO is exposed to less water in the HBO:HSA complex. For the BP(OH) II molecule, unique absorption due to water was observed in the spectral region of 400-450 nm. This absorption decreases in the presence of HSA due to less accessibility to water as a result of binding to HSA. Fluorescence of BP(OH) II is due solely to the di-keto tautomer after double proton transfer in the excited state. The fluorescence peak of BP(OH) II shows a red-shift upon HSA recognition which is attributed to the hydrophobic environment inside the binding site of HSA. We discuss also the effect of probe-inclusion inside well-defined hydrophobic cavities of cyclodextrins.
Steady state plasma operation in RF dominated regimes on EAST
Zhang, X. J.; Zhao, Y. P.; Gong, X. Z.; Hu, C. D.; Liu, F. K.; Hu, L. Q.; Wan, B. N. Li, J. G.
2015-12-10
Significant progress has recently been made on EAST in the 2014 campaign, including the enhanced CW H&CD system over 20MW heating power (LHCD, ICRH and NBI), more than 70 diagnostics, ITER-like W-monoblock on upper divertor, two inner cryo-pumps and RMP coils, enabling EAST to investigate long pulse H mode operation with dominant electron heating and low torque to address the critical issues for ITER. H-mode plasmas were achieved by new H&CD system or 4.6GHz LHCD alone for the first time. Long pulse high performance H mode has been obtained by LHCD alone up to 28s at H{sub 98}∼1.2 or by combing of ICRH and LHCD, no or small ELM was found in RF plasmas, which is essential for steady state operation in the future Tokamak. Plasma operation in low collision regimes were implemented by new 4.6GHz LHCD with core Te∼4.5keV. The non-inductive scenarios with high performance at high bootstrap current fraction have been demonstrated in RF dominated regimes for long pulse operation. Near full non-inductive CD discharges have been achieved. In addition, effective heating and decoupling method under multi-transmitter for ICRF system were developed in this campaign, etc. EAST could be in operation with over 30MW CW heating and current drive power (LHCD ICRH NBI and ECRH), enhanced diagnostic capabilities and full actively-cooled metal wall from 2015. It will therefore allow to access new confinement regimes and to extend these regimes towards to steady state operation.
Steady state plasma operation in RF dominated regimes on EAST
NASA Astrophysics Data System (ADS)
Zhang, X. J.; Zhao, Y. P.; Gong, X. Z.; Hu, C. D.; Liu, F. K.; Hu, L. Q.; Wan, B. N.; Li, J. G.
2015-12-01
Significant progress has recently been made on EAST in the 2014 campaign, including the enhanced CW H&CD system over 20MW heating power (LHCD, ICRH and NBI), more than 70 diagnostics, ITER-like W-monoblock on upper divertor, two inner cryo-pumps and RMP coils, enabling EAST to investigate long pulse H mode operation with dominant electron heating and low torque to address the critical issues for ITER. H-mode plasmas were achieved by new H&CD system or 4.6GHz LHCD alone for the first time. Long pulse high performance H mode has been obtained by LHCD alone up to 28s at H98˜1.2 or by combing of ICRH and LHCD, no or small ELM was found in RF plasmas, which is essential for steady state operation in the future Tokamak. Plasma operation in low collision regimes were implemented by new 4.6GHz LHCD with core Te˜4.5keV. The non-inductive scenarios with high performance at high bootstrap current fraction have been demonstrated in RF dominated regimes for long pulse operation. Near full non-inductive CD discharges have been achieved. In addition, effective heating and decoupling method under multi-transmitter for ICRF system were developed in this campaign, etc. EAST could be in operation with over 30MW CW heating and current drive power (LHCD ICRH NBI and ECRH), enhanced diagnostic capabilities and full actively-cooled metal wall from 2015. It will therefore allow to access new confinement regimes and to extend these regimes towards to steady state operation.
The Budyko functions under non-steady-state conditions
NASA Astrophysics Data System (ADS)
Moussa, Roger; Lhomme, Jean-Paul
2016-12-01
The Budyko functions relate the evaporation ratio E / P (E is evaporation and P precipitation) to the aridity index Φ = Ep / P (Ep is potential evaporation) and are valid on long timescales under steady-state conditions. A new physically based formulation (noted as Moussa-Lhomme, ML) is proposed to extend the Budyko framework under non-steady-state conditions taking into account the change in terrestrial water storage ΔS. The variation in storage amount ΔS is taken as negative when withdrawn from the area at stake and used for evaporation and positive otherwise, when removed from the precipitation and stored in the area. The ML formulation introduces a dimensionless parameter HE = -ΔS / Ep and can be applied with any Budyko function. It represents a generic framework, easy to use at various time steps (year, season or month), with the only data required being Ep, P and ΔS. For the particular case where the Fu-Zhang equation is used, the ML formulation with ΔS ≤ 0 is similar to the analytical solution of Greve et al. (2016) in the standard Budyko space (Ep / P, E / P), a simple relationship existing between their respective parameters. The ML formulation is extended to the space [Ep / (P - ΔS), E / (P - ΔS)] and compared to the formulations of Chen et al. (2013) and Du et al. (2016). The ML (or Greve et al., 2016) feasible domain has a similar upper limit to that of Chen et al. (2013) and Du et al. (2016), but its lower boundary is different. Moreover, the domain of variation of Ep / (P - ΔS) differs: for ΔS ≤ 0, it is bounded by an upper limit 1 / HE in the ML formulation, while it is only bounded by a lower limit in Chen et al.'s (2013) and Du et al.'s (2016) formulations. The ML formulation can also be conducted using the dimensionless parameter HP = -ΔS / P instead of HE, which yields another form of the equations.
Critical Concavity of a Drainage Basin for Steady-State
NASA Astrophysics Data System (ADS)
Byun, Jongmin; Paik, Kyungrock
2015-04-01
Longitudinal profiles of natural streams are known to show concave forms. Saying A as drainage area, channel gradient S can be expressed as the power-law, S≈A-θ (Flint, 1974), which is one of the scale-invariant features of drainage basin. According to literature, θ of most natural streams falls into a narrow range (0.4 < θ < 0.7) (Tucker and Whipple, 2002). It leads to fundamental questions: 'Why does θ falls into such narrow range?' and 'How is this related with other power-law scaling relationships reported in natural drainage basins?' To answer above questions, we analytically derive θ for a steady-state drainage basin following Lane's equilibrium (Lane, 1955) throughout the corridor and named this specific case as the 'critical concavity'. In the derivation, sediment transport capacity is estimated by unit stream power model (Yang, 1976), yielding a power function of upstream area. Stability of channel at a local point occurs when incoming flux equals outgoing flux at the point. Therefore, given the drainage at steady-state where all channel beds are stable, the exponent of the power function should be zero. From this, we can determine the critical concavity. Considering ranges of variables associated in this derivation, critical concavity cannot be resolved as a single definite value, rather a range of critical concavity is suggested. This range well agrees with the widely reported range of θ (0.4 < θ < 0.7) in natural streams. In this theoretical study, inter-relationships between power-laws such as hydraulic geometry (Leopold and Maddock, 1953), dominant discharge-drainage area (Knighton et al., 1999), and concavity, are coupled into the power-law framework of stream power sediment transport model. This allows us to explore close relationships between their power-law exponents: their relative roles and sensitivity. Detailed analysis and implications will be presented. References Flint, J. J., 1974, Stream gradient as a function of order, magnitude
Yongky, Andrew; Lee, Jongchan; Le, Tung; Mulukutla, Bhanu Chandra; Daoutidis, Prodromos; Hu, Wei-Shou
2015-07-01
Continuous culture for the production of biopharmaceutical proteins offers the possibility of steady state operations and thus more consistent product quality and increased productivity. Under some conditions, multiplicity of steady states has been observed in continuous cultures of mammalian cells, wherein with the same dilution rate and feed nutrient composition, steady states with very different cell and product concentrations may be reached. At those different steady states, cells may exhibit a high glycolysis flux with high lactate production and low cell concentration, or a low glycolysis flux with low lactate and high cell concentration. These different steady states, with different cell concentration, also have different productivity. Developing a mechanistic understanding of the occurrence of steady state multiplicity and devising a strategy to steer the culture toward the desired steady state is critical. We establish a multi-scale kinetic model that integrates a mechanistic intracellular metabolic model and cell growth model in a continuous bioreactor. We show that steady state multiplicity exists in a range of dilution rate in continuous culture as a result of the bistable behavior in glycolysis. The insights from the model were used to devise strategies to guide the culture to the desired steady state in the multiple steady state region. The model provides a guideline principle in the design of continuous culture processes of mammalian cells.
Steady state solutions to dynamically loaded periodic structures
NASA Technical Reports Server (NTRS)
Kalinowski, A. J.
1980-01-01
The general problem of solving for the steady state (time domain) dynamic response (i.e., NASTRAN rigid format-8) of a general elastic periodic structure subject to a phase difference loading of the type encountered in traveling wave propagation problems was studied. Two types of structural configurations were considered; in the first type, the structure has a repeating pattern over a span that is long enough to be considered, for all practical purposes, as infinite; in the second type, the structure has structural rotational symmetry in the circumferential direction. The theory and a corresponding set of DMAP instructions which permits the NASTRAN user to automatically alter the rigid format-8 sequence to solve the intended class of problems are presented. Final results are recovered as with any ordinary rigid format-8 solution, except that the results are only printed for the typical periodic segment of the structure. A simple demonstration problem having a known exact solution is used to illustrate the implementation of the procedure.
Steady state quantum discord for circularly accelerated atoms
Hu, Jiawei; Yu, Hongwei
2015-12-15
We study, in the framework of open quantum systems, the dynamics of quantum entanglement and quantum discord of two mutually independent circularly accelerated two-level atoms in interaction with a bath of fluctuating massless scalar fields in the Minkowski vacuum. We assume that the two atoms rotate synchronically with their separation perpendicular to the rotating plane. The time evolution of the quantum entanglement and quantum discord of the two-atom system is investigated. For a maximally entangled initial state, the entanglement measured by concurrence diminishes to zero within a finite time, while the quantum discord can either decrease monotonically to an asymptotic value or diminish to zero at first and then followed by a revival depending on whether the initial state is antisymmetric or symmetric. When both of the two atoms are initially excited, the generation of quantum entanglement shows a delayed feature, while quantum discord is created immediately. Remarkably, the quantum discord for such a circularly accelerated two-atom system takes a nonvanishing value in the steady state, and this is distinct from what happens in both the linear acceleration case and the case of static atoms immersed in a thermal bath.
Grand canonical steady-state simulation of nucleation
NASA Astrophysics Data System (ADS)
Horsch, Martin; Vrabec, Jadran
2009-11-01
Grand canonical molecular dynamics (GCMD) is applied to the nucleation process in a metastable phase near the spinodal, where nucleation occurs almost instantaneously and is limited to a very short time interval. With a variant of Maxwell's demon, proposed by McDonald [Am. J. Phys. 31, 31 (1963)], all nuclei exceeding a specified size are removed. In such a steady-state simulation, the nucleation process is sampled over an arbitrary time span and all properties of the metastable state, including the nucleation rate, can be obtained with an increased precision. As an example, a series of GCMD simulations with McDonald's demon is carried out for homogeneous vapor to liquid nucleation of the truncated-shifted Lennard-Jones (tsLJ) fluid, covering the entire relevant temperature range. The results are in agreement with direct nonequilibrium MD simulation in the canonical ensemble. It is confirmed for supersaturated vapors of the tsLJ fluid that the classical nucleation theory underpredicts the nucleation rate by two orders of magnitude.
Nonequilibrium steady states of ideal bosonic and fermionic quantum gases
NASA Astrophysics Data System (ADS)
Vorberg, Daniel; Wustmann, Waltraut; Schomerus, Henning; Ketzmerick, Roland; Eckardt, André
2015-12-01
We investigate nonequilibrium steady states of driven-dissipative ideal quantum gases of both bosons and fermions. We focus on systems of sharp particle number that are driven out of equilibrium either by the coupling to several heat baths of different temperature or by time-periodic driving in combination with the coupling to a heat bath. Within the framework of (Floquet-)Born-Markov theory, several analytical and numerical methods are described in detail. This includes a mean-field theory in terms of occupation numbers, an augmented mean-field theory taking into account also nontrivial two-particle correlations, and quantum-jump-type Monte Carlo simulations. For the case of the ideal Fermi gas, these methods are applied to simple lattice models and the possibility of achieving exotic states via bath engineering is pointed out. The largest part of this work is devoted to bosonic quantum gases and the phenomenon of Bose selection, a nonequilibrium generalization of Bose condensation, where multiple single-particle states are selected to acquire a large occupation [Phys. Rev. Lett. 111, 240405 (2013), 10.1103/PhysRevLett.111.240405]. In this context, among others, we provide a theory for transitions where the set of selected states changes, describe an efficient algorithm for finding the set of selected states, investigate beyond-mean-field effects, and identify the dominant mechanisms for heat transport in the Bose-selected state.
Steady-state and dynamic network modes for perceptual expectation
Choi, Uk-Su; Sung, Yul-Wan; Ogawa, Seiji
2017-01-01
Perceptual expectation can attenuate repetition suppression, the stimulus-induced neuronal response generated by repeated stimulation, suggesting that repetition suppression is a top-down modulatory phenomenon. However, it is still unclear which high-level brain areas are involved and how they interact with low-level brain areas. Further, the temporal range over which perceptual expectation can effectively attenuate repetition suppression effects remains unclear. To elucidate the details of this top-down modulatory process, we used two short and long inter-stimulus intervals for a perceptual expectation paradigm of paired stimulation. We found that top-down modulation enhanced the response to the unexpected stimulus when repetition suppression was weak and that the effect disappeared at 1,000 ms prior to stimulus exposure. The high-level areas involved in this process included the left inferior frontal gyrus (IFG_L) and left parietal lobule (IPL_L). We also found two systems providing modulatory input to the right fusiform face area (FFA_R): one from IFG_L and the other from IPL_L. Most importantly, we identified two states of networks through which perceptual expectation modulates sensory responses: one is a dynamic state and the other is a steady state. Our results provide the first functional magnetic resonance imaging (fMRI) evidence of temporally nested networks in brain processing. PMID:28079163
Visual steady state in relation to age and cognitive function.
Horwitz, Anna; Dyhr Thomsen, Mia; Wiegand, Iris; Horwitz, Henrik; Klemp, Marc; Nikolic, Miki; Rask, Lene; Lauritzen, Martin; Benedek, Krisztina
2017-01-01
Neocortical gamma activity is crucial for sensory perception and cognition. This study examines the value of using non-task stimulation-induced EEG oscillations to predict cognitive status in a birth cohort of healthy Danish males (Metropolit) with varying cognitive ability. In particular, we examine the steady-state VEP power response (SSVEP-PR) in the alpha (8Hz) and gamma (36Hz) bands in 54 males (avg. age: 62.0 years) and compare these with 10 young healthy participants (avg. age 27.6 years). Furthermore, we correlate the individual alpha-to-gamma difference in relative visual-area power (ΔRV) with cognitive scores for the older adults. We find that ΔRV decrease with age by just over one standard deviation when comparing young with old participants (p<0.01). Furthermore, intelligence is significantly negatively correlated with ΔRV in the older adult cohort, even when processing speed, global cognition, executive function, memory, and education (p<0.05). In our preferred specification, an increase in ΔRV of one standard deviation is associated with a reduction in intelligence of 48% of a standard deviation (p<0.01). Finally, we conclude that the difference in cerebral rhythmic activity between the alpha and gamma bands is associated with age and cognitive status, and that ΔRV therefore provide a non-subjective clinical tool with which to examine cognitive status in old age.
Visual steady state in relation to age and cognitive function
Dyhr Thomsen, Mia; Wiegand, Iris; Horwitz, Henrik; Klemp, Marc; Nikolic, Miki; Rask, Lene; Lauritzen, Martin; Benedek, Krisztina
2017-01-01
Neocortical gamma activity is crucial for sensory perception and cognition. This study examines the value of using non-task stimulation-induced EEG oscillations to predict cognitive status in a birth cohort of healthy Danish males (Metropolit) with varying cognitive ability. In particular, we examine the steady-state VEP power response (SSVEP-PR) in the alpha (8Hz) and gamma (36Hz) bands in 54 males (avg. age: 62.0 years) and compare these with 10 young healthy participants (avg. age 27.6 years). Furthermore, we correlate the individual alpha-to-gamma difference in relative visual-area power (ΔRV) with cognitive scores for the older adults. We find that ΔRV decrease with age by just over one standard deviation when comparing young with old participants (p<0.01). Furthermore, intelligence is significantly negatively correlated with ΔRV in the older adult cohort, even when processing speed, global cognition, executive function, memory, and education (p<0.05). In our preferred specification, an increase in ΔRV of one standard deviation is associated with a reduction in intelligence of 48% of a standard deviation (p<0.01). Finally, we conclude that the difference in cerebral rhythmic activity between the alpha and gamma bands is associated with age and cognitive status, and that ΔRV therefore provide a non-subjective clinical tool with which to examine cognitive status in old age. PMID:28245274
Maximally reliable spatial filtering of steady state visual evoked potentials.
Dmochowski, Jacek P; Greaves, Alex S; Norcia, Anthony M
2015-04-01
Due to their high signal-to-noise ratio (SNR) and robustness to artifacts, steady state visual evoked potentials (SSVEPs) are a popular technique for studying neural processing in the human visual system. SSVEPs are conventionally analyzed at individual electrodes or linear combinations of electrodes which maximize some variant of the SNR. Here we exploit the fundamental assumption of evoked responses--reproducibility across trials--to develop a technique that extracts a small number of high SNR, maximally reliable SSVEP components. This novel spatial filtering method operates on an array of Fourier coefficients and projects the data into a low-dimensional space in which the trial-to-trial spectral covariance is maximized. When applied to two sample data sets, the resulting technique recovers physiologically plausible components (i.e., the recovered topographies match the lead fields of the underlying sources) while drastically reducing the dimensionality of the data (i.e., more than 90% of the trial-to-trial reliability is captured in the first four components). Moreover, the proposed technique achieves a higher SNR than that of the single-best electrode or the Principal Components. We provide a freely-available MATLAB implementation of the proposed technique, herein termed "Reliable Components Analysis".
Quasi-steady state aerodynamics of the cheetah tail.
Patel, Amir; Boje, Edward; Fisher, Callen; Louis, Leeann; Lane, Emily
2016-08-15
During high-speed pursuit of prey, the cheetah (Acinonyx jubatus) has been observed to swing its tail while manoeuvring (e.g. turning or braking) but the effect of these complex motions is not well understood. This study demonstrates the potential of the cheetah's long, furry tail to impart torques and forces on the body as a result of aerodynamic effects, in addition to the well-known inertial effects. The first-order aerodynamic forces on the tail are quantified through wind tunnel testing and it is observed that the fur nearly doubles the effective frontal area of the tail without much mass penalty. Simple dynamic models provide insight into manoeuvrability via simulation of pitch, roll and yaw tail motion primitives. The inertial and quasi-steady state aerodynamic effects of tail actuation are quantified and compared by calculating the angular impulse imparted onto the cheetah's body and its shown aerodynamic effects contribute to the tail's angular impulse, especially at the highest forward velocities.
Quasi-steady state aerodynamics of the cheetah tail
Boje, Edward; Fisher, Callen; Louis, Leeann; Lane, Emily
2016-01-01
ABSTRACT During high-speed pursuit of prey, the cheetah (Acinonyx jubatus) has been observed to swing its tail while manoeuvring (e.g. turning or braking) but the effect of these complex motions is not well understood. This study demonstrates the potential of the cheetah's long, furry tail to impart torques and forces on the body as a result of aerodynamic effects, in addition to the well-known inertial effects. The first-order aerodynamic forces on the tail are quantified through wind tunnel testing and it is observed that the fur nearly doubles the effective frontal area of the tail without much mass penalty. Simple dynamic models provide insight into manoeuvrability via simulation of pitch, roll and yaw tail motion primitives. The inertial and quasi-steady state aerodynamic effects of tail actuation are quantified and compared by calculating the angular impulse imparted onto the cheetah's body and its shown aerodynamic effects contribute to the tail's angular impulse, especially at the highest forward velocities. PMID:27412267
The Path of Carbon in Photosynthesis XX. The Steady State
DOE R&D Accomplishments Database
Calvin, M.; Massini, Peter
1952-09-01
The separation of the phenomenon of photosynthesis in green plants into a photochemical reaction and into the light-dependent reduction of carbon dioxide is discussed, The reduction of carbon dioxide and the fate of the assimilated carbon were investigated with the help of the tracer technique (exposure of the planks to the radioactive C{sup 14}O{sub 2}) and of paper chromatography. A reaction cycle is proposed in which phosphoglyceric acid is the first isolable assimilations product. Analyses of the algal extracts which had assimilated radioactive carbon dioxide in a stationary condition ('steady-state' photosynthesis) for a long time provided further information concerning the proposed cycle and permitted the approximate estimation, for a number of compounds of what fraction of each compound was taking part in the cycle. The earlier supposition that light influences the respiration cycle was confirmed. The possibility of the assistance of {alpha}-lipoic acid, or of a related substance, in this influence and in the photosynthesis cycle, is discussed.
Ising game: Nonequilibrium steady states of resource-allocation systems
NASA Astrophysics Data System (ADS)
Xin, C.; Yang, G.; Huang, J. P.
2017-04-01
Resource-allocation systems are ubiquitous in the human society. But how external fields affect the state of such systems remains poorly explored due to the lack of a suitable model. Because the behavior of spins pursuing energy minimization required by physical laws is similar to that of humans chasing payoff maximization studied in game theory, here we combine the Ising model with the market-directed resource-allocation game, yielding an Ising game. Based on the Ising game, we show theoretical, simulative and experimental evidences for a formula, which offers a clear expression of nonequilibrium steady states (NESSs). Interestingly, the formula also reveals a convertible relationship between the external field (exogenous factor) and resource ratio (endogenous factor), and a class of saturation as the external field exceeds certain limits. This work suggests that the Ising game could be a suitable model for studying external-field effects on resource-allocation systems, and it could provide guidance both for seeking more relations between NESSs and equilibrium states and for regulating human systems by choosing NESSs appropriately.
Flavour fields in steady state: stress tensor and free energy
NASA Astrophysics Data System (ADS)
Banerjee, Avik; Kundu, Arnab; Kundu, Sandipan
2016-02-01
The dynamics of a probe brane in a given gravitational background is governed by the Dirac-Born-Infeld action. The corresponding open string metric arises naturally in studying the fluctuations on the probe. In Gauge-String duality, it is known that in the presence of a constant electric field on the worldvolume of the probe, the open string metric acquires an event horizon and therefore the fluctuation modes on the probe experience an effective temperature. In this article, we bring together various properties of such a system to a formal definition and a subsequent narration of the effective thermodynamics and the stress tensor of the corresponding flavour fields, also including a non-vanishing chemical potential. In doing so, we point out a potentially infinitely-degenerate scheme-dependence of regularizing the free energy, which nevertheless yields a universal contribution in certain cases. This universal piece appears as the coefficient of a log-divergence in free energy when a space-filling probe brane is embedded in AdS d+1-background, for d = 2, 4, and is related to conformal anomaly. For the special case of d = 2, the universal factor has a striking resemblance to the well-known heat current formula in (1 + 1)-dimensional conformal field theory in steady-state, which endows a plausible physical interpretation to it. Interestingly, we observe a vanishing conformal anomaly in d = 6.
Models of steady state cooling flows in elliptical galaxies
NASA Technical Reports Server (NTRS)
Vedder, Peter W.; Trester, Jeffrey J.; Canizares, Claude R.
1988-01-01
A comprehensive set of steady state models for spherically symmetric cooling flows in early-type galaxies is presented. It is found that a reduction of the supernova (SN) rate in ellipticals produces a decrease in the X-ray luminosity of galactic cooling flows and a steepening of the surface brightness profile. The mean X-ray temperature of the cooling flow is not affected noticeably by a change in the SN rate. The external pressure around a galaxy does not markedly change the luminosity of the gas within the galaxy but does change the mean temperature of the gas. The presence of a dark matter halo in a galaxy only changes the mean X-ray temperature slightly. The addition of a distribution of mass sinks which remove material from the general accretion flow reduces L(X) very slightly, flattens the surface brightness profile, and reduces the central surface brightness level to values close to those actually observed. A reduction in the stellar mass-loss rate only slightly reduces the X-ray luminosity of the cooling flow and flattens the surface brightness by a small amount.
Optomechanically induced transparency associated with steady-state entanglement
NASA Astrophysics Data System (ADS)
He, Yong
2015-01-01
We theoretically investigate a two-cavity optomechanical system in which a cavity (cavity a ) couples to a mechanical resonator via radiation pressure and to another cavity (cavity c ) via a common waveguide. In the excitation of a strong pump filed to cavity a , the steady-state entanglement between cavity a and c , as a quantum channel, can be generated, which provides an indirect optical pathway to excite cavity c by means of the pump filed. Quantum interference between the direct and indirect optical pathways gives rise to an optomechanically induced transparency appearing in the probe transmission of cavity c . Unlike in a typical optomechanically induced transparency effect, the electromagnetical control of the transmission is implemented by resorting to the quantum channel. Furthermore, the coupling strength of the two cavities is an important factor of the quantum channel, which can influence the width of the transparency window and the bistable behavior of the mean photon number in cavity a . We also illustrate that the electromagnetical control via quantum channel can be exploited to implement the optical switch and the slow light.
Steady State Turbulent Transport in Magnetic Fusion Plasmas
Lee, W. W.; Ethier, S.; Kolesnikov, R.; Wang, W. X.; Tang, W. M.
2007-12-20
For more than a decade, the study of microturbulence, driven by ion temperature gradient (ITG) drift instabilities in tokamak devices, has been an active area of research in magnetic fusion science for both experimentalists and theorists alike. One of the important impetus for this avenue of research was the discovery of the radial streamers associated the ITG modes in the early nineties using a Particle-In-Cell (PIC) code. Since then, ITG simulations based on the codes with increasing realism have become possible with the dramatic increase in computing power. The notable examples were the demonstration of the importance of nonlinearly generated zonal flows in regulating ion thermal transport and the transition from Bohm to GyroBoham scaling with increased device size. In this paper, we will describe another interesting nonlinear physical process associated with the parallel acceleration of the ions, that is found to play an important role for the steady state turbulent transport. Its discovery is again through the use of the modern massively parallel supercomputers.
Steady-state and dynamic network modes for perceptual expectation.
Choi, Uk-Su; Sung, Yul-Wan; Ogawa, Seiji
2017-01-12
Perceptual expectation can attenuate repetition suppression, the stimulus-induced neuronal response generated by repeated stimulation, suggesting that repetition suppression is a top-down modulatory phenomenon. However, it is still unclear which high-level brain areas are involved and how they interact with low-level brain areas. Further, the temporal range over which perceptual expectation can effectively attenuate repetition suppression effects remains unclear. To elucidate the details of this top-down modulatory process, we used two short and long inter-stimulus intervals for a perceptual expectation paradigm of paired stimulation. We found that top-down modulation enhanced the response to the unexpected stimulus when repetition suppression was weak and that the effect disappeared at 1,000 ms prior to stimulus exposure. The high-level areas involved in this process included the left inferior frontal gyrus (IFG_L) and left parietal lobule (IPL_L). We also found two systems providing modulatory input to the right fusiform face area (FFA_R): one from IFG_L and the other from IPL_L. Most importantly, we identified two states of networks through which perceptual expectation modulates sensory responses: one is a dynamic state and the other is a steady state. Our results provide the first functional magnetic resonance imaging (fMRI) evidence of temporally nested networks in brain processing.
Modeling on the Steady State of Thwaites Glacier
NASA Astrophysics Data System (ADS)
Yu, H.; Rignot, E. J.; Morlighem, M.; Seroussi, H.
2013-12-01
Thwaites Glacier (TWG) is the second largest ice stream in West Antarctica in terms of ice discharge, and the broadest ice stream in Antarctica (120 km wide). Observations and theory suggest that its configuration is inherently unstable in a warming climate. Satellite observations have revealed grounding line retreat, ice thinning, ice stream broadening and in more recent years ice flow acceleration. The most important part of the glacier evolution involves its grounding line dynamics and the impact of ice-ocean interactions. In a region between the grounding line and the limit of the flexure zone, some 10 km downstream, however, the glacier is not in hydrostatic equilibrium. Proper treatment of the grounding line dynamics requires full Stokes solution. Here, we model the grounding line of TWG in 2D, full Stokes, with the goal to examine whether the glacier is in a steady state configuration or not. The model treats ice sheet and ice shelf as two fluids coupled through the ice mass flux (Nowicki, 2008). Water stress is used as a constraint on the ice shelf instead of hydrostatic equilibrium. We use radar interferometry (InSAR) measurements of ice velocity and grounding line position through time, Bedmap2 and IceBridge thickness, and surface mass balance from RACMO to constrain the model. The results are used to conclude on the state of dynamic balance of the glacier. This work is funded by NASA Cryospheric Science Program.
The inductive, steady-state sustainment of stable spheromaks
NASA Astrophysics Data System (ADS)
Hossack, A. C.; Jarboe, T. R.; Morgan, K. D.; Sutherland, D. A.; Hansen, C. J.; Everson, C. J.; Penna, J. M.; Nelson, B. A.
2016-10-01
Inductive helicity injection current drive with imposed perturbations has led to the breakthrough of spheromak sustainment while maintaining stability. Sustained spheromaks show coherent, imposed plasma motion and low plasma-generated mode activity, indicating stability. Additionally, record current gain of 3.9 has been achieved with evidence of pressure confinement. The Helicity Injected Torus - Steady Inductive (HIT-SI) experiment studies efficient, steady-state current drive for magnetic confinement plasmas using a novel experimental method which is ideal for low aspect ratio, toroidal geometries and is compatible with closed flux surfaces. Analysis of surface magnetic probes indicates large n = 0 and 1 toroidal Fourier mode amplitudes and little energy in higher modes. Biorthogonal decomposition shows that almost all of the n = 1 energy is imposed by the injectors, rather than plasma-generated. Ion Doppler spectroscopy (IDS) measurements show coherent, imposed plasma motion of +/-2.5 cm in the region inside r 10 cm (a = 23 cm) and the size of the separate spheromak is consistent with that predicted by Imposed-dynamo Current Drive (IDCD). Coherent motion indicates that the spheromak is stable and a lack of plasma-generated n = 1 energy indicates that the maximum q is maintained below 1 for stability during sustainment.
Dynamic causal models of steady-state responses
Moran, R.J.; Stephan, K.E.; Seidenbecher, T.; Pape, H.-C.; Dolan, R.J.; Friston, K.J.
2009-01-01
In this paper, we describe a dynamic causal model (DCM) of steady-state responses in electrophysiological data that are summarised in terms of their cross-spectral density. These spectral data-features are generated by a biologically plausible, neural-mass model of coupled electromagnetic sources; where each source comprises three sub-populations. Under linearity and stationarity assumptions, the model's biophysical parameters (e.g., post-synaptic receptor density and time constants) prescribe the cross-spectral density of responses measured directly (e.g., local field potentials) or indirectly through some lead-field (e.g., electroencephalographic and magnetoencephalographic data). Inversion of the ensuing DCM provides conditional probabilities on the synaptic parameters of intrinsic and extrinsic connections in the underlying neuronal network. This means we can make inferences about synaptic physiology, as well as changes induced by pharmacological or behavioural manipulations, using the cross-spectral density of invasive or non-invasive electrophysiological recordings. In this paper, we focus on the form of the model, its inversion and validation using synthetic and real data. We conclude with an illustrative application to multi-channel local field potential data acquired during a learning experiment in mice. PMID:19000769
Fault Wear by Damage Evolution During Steady-State Slip
NASA Astrophysics Data System (ADS)
Lyakhovsky, Vladimir; Sagy, Amir; Boneh, Yuval; Reches, Ze'ev
2014-11-01
Slip along faults generates wear products such as gouge layers and cataclasite zones that range in thickness from sub-millimeter to tens of meters. The properties of these zones apparently control fault strength and slip stability. Here we present a new model of wear in a three-body configuration that utilizes the damage rheology approach and considers the process as a microfracturing or damage front propagating from the gouge zone into the solid rock. The derivations for steady-state conditions lead to a scaling relation for the damage front velocity considered as the wear-rate. The model predicts that the wear-rate is a function of the shear-stress and may vanish when the shear-stress drops below the microfracturing strength of the fault host rock. The simulated results successfully fit the measured friction and wear during shear experiments along faults made of carbonate and tonalite. The model is also valid for relatively large confining pressures, small damage-induced change of the bulk modulus and significant degradation of the shear modulus, which are assumed for seismogenic zones of earthquake faults. The presented formulation indicates that wear dynamics in brittle materials in general and in natural faults in particular can be understood by the concept of a "propagating damage front" and the evolution of a third-body layer.
Steady-state and transient results on insulation materials
Graves, R.S.; Yarbrough, D.W.; McElroy, D.L.; Fine, H.A.
1991-01-01
The Unguarded Thin-Heater Apparatus (UTHA, ASTM C 1114) was used to determine the thermal conductivity (k), specific heat (C), and thermal diffusivity ({alpha}) of selected building materials from 24 to 50{degree}C. Steady-state and transient measurements yielded data on four types of material: gypsum wall board containing 0, 15, and 30 wt % wax; calcium silicate insulations with densities ({rho}) of 307, 444, and 605 kg/m{sup 3}; three wood products: southern yellow pine flooring (575 kg/m{sup 3}), Douglas fir plywood (501 kg/m{sup 3}), and white spruce flooring (452 kg/m{sup 3}); and two cellular plastic foams: extruded polystyrene (30 kg/m{sup 3}) blown with HCFC-142b and polyisocyanurate rigid board (30.2 kg/m{sup 3}) blown with CFC-11. The extruded polystyrene was measured several times after production (25 days, 45 days, 74 days, 131 days, and 227 days). The UTHA is an absolute technique that yields k with an uncertainty of less than {plus minus}2% as determined by modeling, by determinate error analyses, and by use of Standard Reference Materials SRM-1450b and SRM-1451. 37 refs., 5 figs., 10 tabs.
Steady-state growth of the marine diatom Thalassiosira pseudonana
Olson, R.J.; SooHoo, J.B.; Kiefer, D.A.
1980-09-01
Seasonal studies of the vertical distribution of nitrate, nitrite, and phytoplankton in the oceans and studies using /sup 15/N as a tracer of nitrate metabolism indicate that the reduction of nitrate by phytoplankton is a source of nitrite in the upper waters of the ocean. To better understand this process, the relationship between nitrate uptake and nitrite production has been examined with continuous cultures of the small marine diatom Thalassiosira pseudonana. In a turbidostat culture, the rates of nitrite production by T. Pseudonana increase with light intensity. This process is only loosely coupled to rates of nitrate assimilation since the ratio of net nitrite production to total nitrate assimilation increases with increased rates of growth. In continuous cultures where steady-state concentrations of nitrate and nitrite were varied, T. pseudonana produced nitrite at rates which increased with increasing concentrations of nitrate. Again, the rates of nitrite production were uncoupled from rates of nitrate assimilation. The study was used to derive a mathematical description of nitrate and nitrite metabolism by T. pseudonana. The validity of this model was supported by the results of a study in which /sup 15/N-labeled nitrite was introduced into the continuous culture, and the model was used to examine patterns in distribution of nitrite in the Antarctic Ocean and the Sargasso Sea.
Steady State Analysis of Small Molten Salt Reactor
NASA Astrophysics Data System (ADS)
Yamamoto, Takahisa; Mitachi, Koshi; Suzuki, Takashi
The Molten Salt Reactor (MSR) is a thermal neutron reactor with graphite moderation and operates on the thorium-uranium fuel cycle. The feature of the MSR is that fuel salt flows inside the reactor during the nuclear fission reaction. In the previous study, the authors developed numerical model with which to simulate the effects of fuel salt flow on the reactor characteristics. In this study, we apply the model to the steady-state analysis of a small MSR system and estimate the effects of fuel flow. The model consists of two-group neutron diffusion equations for fast and thermal neutron fluxes, transport equations for six-group delayed neutron precursors and energy conservation equations for fuel salt and the graphite moderator. The following results are obtained: (1) in the rated operation condition, the peaks of the neutron fluxes slightly move toward the bottom from the center of the reactor and the delayed neutron precursors are significantly carried by the fuel salt flow, and (2) the extension of residence time in the external-loop system and the rise of the fuel inflow temperature show weak negative reactivity effects, which decrease the neutron multiplication factor of the small MSR system.
NASA Lewis steady-state heat pipe code users manual
NASA Technical Reports Server (NTRS)
Tower, Leonard K.; Baker, Karl W.; Marks, Timothy S.
1992-01-01
The NASA Lewis heat pipe code was developed to predict the performance of heat pipes in the steady state. The code can be used as a design tool on a personal computer or with a suitable calling routine, as a subroutine for a mainframe radiator code. A variety of wick structures, including a user input option, can be used. Heat pipes with multiple evaporators, condensers, and adiabatic sections in series and with wick structures that differ among sections can be modeled. Several working fluids can be chosen, including potassium, sodium, and lithium, for which monomer-dimer equilibrium is considered. The code incorporates a vapor flow algorithm that treats compressibility and axially varying heat input. This code facilitates the determination of heat pipe operating temperatures and heat pipe limits that may be encountered at the specified heat input and environment temperature. Data are input to the computer through a user-interactive input subroutine. Output, such as liquid and vapor pressures and temperatures, is printed at equally spaced axial positions along the pipe as determined by the user.
Steady-state compartmentalization of lipid membranes by active proteins.
Sabra, M C; Mouritsen, O G
1998-01-01
Using a simple microscopic model of lipid-protein interactions, based on the hydrophobic matching principle, we study some generic aspects of lipid-membrane compartmentalization controlled by a dispersion of active integral membrane proteins. The activity of the proteins is simulated by conformational excitations governed by an external drive, and the deexcitation is controlled by interaction of the protein with its lipid surroundings. In response to the flux of energy into the proteins from the environment and the subsequent dissipation of energy into the lipid bilayer, the lipid-protein assembly reorganizes into a steady-state structure with a typical length scale determined by the strength of the external drive. In the specific case of a mixed dimyristoylphosphatidylcholine-distearoylphosphatidylcholine bilayer in the gel-fluid coexistence region, it is shown explicitly by computer simulation that the activity of an integral membrane protein can lead to a compartmentalization of the lipid-bilayer membrane. The compartmentalization is related to the dynamical process of phase separation and lipid domain formation. PMID:9533687
Mimicking Nonequilibrium Steady States with Time-Periodic Driving
NASA Astrophysics Data System (ADS)
Raz, Oren; Subasi, Yigit; Jarzynski, Christopher
Under static conditions, a system satisfying detailed balance generically relaxes to an equilibrium state in which there are no currents: to generate persistent currents, either detailed balance must be broken or the system must be driven in a time-dependent manner. A stationary system that violates detailed balance evolves to a nonequilibrium steady state (NESS) characterized by fixed currents. Conversely, a system that satisfies instantaneous detailed balance but is driven by the time-periodic variation of external parameters - also known as a stochastic pump (SP) - reaches a periodic state with non-vanishing currents. In both cases, these currents are maintained at the cost of entropy production. Are these two paradigmatic scenarios effectively equivalent? For discrete-state systems we establish a mapping between NESS and SP. Given a NESS characterized by a particular set of stationary probabilities, currents and entropy production rates, we show how to construct a SP with exactly the same (time-averaged) values. The mapping works in the opposite direction as well. These results establish a proof of principle: they show that SP are able to mimic the behavior of NESS, and vice-versa, within the theoretical framework of discrete-state stochastic thermodynamics.
Dynamic steady state of periodically driven quantum systems
NASA Astrophysics Data System (ADS)
Yudin, V. I.; Taichenachev, A. V.; Basalaev, M. Yu.
2016-01-01
Using the density matrix formalism, we prove the existence of the periodic steady state for an arbitrary periodically driven system described by linear dynamic equations. This state has the same period as the modulated external influence, and it is realized as an asymptotic solution (t →+∞ ) due to relaxation processes. The presented derivation simultaneously contains a simple and effective computational algorithm (without using either the Floquet or Fourier formalisms), which automatically guarantees a full account of all frequency components. As a particular example, for three-level Λ system we calculate the line shape and field-induced shift of the dark resonance formed by the field with a periodically modulated phase. Also we have analytically solved a basic theoretical problem of the direct frequency comb spectroscopy, when the two-level system is driven by the periodic sequence of rectangular pulses. In this case, the radical dependence of the spectroscopy line shape on pulse area is found. Moreover, the existence of quasiforbidden spectroscopic zones, in which the Ramsey fringes are significantly reduced, is predicted. Our results have a wide area of applications in laser physics, spectroscopy, atomic clocks, and magnetometry. Also they can be useful for any area of quantum physics where periodically driven systems are considered.
Magnetocentrifugal Winds in 3D: Nonaxisymmetric Steady State
Anderson, Jeffrey M.; Li, Zhi-Yun; Krasnopolsky, Ruben; Blandford, Roger D.; /SLAC
2006-11-28
Outflows can be loaded and accelerated to high speeds along rapidly rotating, open magnetic field lines by centrifugal forces. Whether such magnetocentrifugally driven winds are stable is a longstanding theoretical problem. As a step towards addressing this problem, we perform the first large-scale 3D MHD simulations that extend to a distance {approx} 10{sup 2} times beyond the launching region, starting from steady 2D (axisymmetric) solutions. In an attempt to drive the wind unstable, we increase the mass loading on one half of the launching surface by a factor of {radical}10, and reduce it by the same factor on the other half. The evolution of the perturbed wind is followed numerically. We find no evidence for any rapidly growing instability that could disrupt the wind during the launching and initial phase of propagation, even when the magnetic field of the magnetocentrifugal wind is toroidally dominated all the way to the launching surface. The strongly perturbed wind settles into a new steady state, with a highly asymmetric mass distribution. The distribution of magnetic field strength is, in contrast, much more symmetric. We discuss possible reasons for the apparent stability, including stabilization by an axial poloidal magnetic field, which is required to bend field lines away from the vertical direction and produce a magnetocentrifugal wind in the first place.
Classical quasi-steady state reduction-A mathematical characterization
NASA Astrophysics Data System (ADS)
Goeke, Alexandra; Walcher, Sebastian; Zerz, Eva
2017-04-01
We discuss parameter dependent polynomial ordinary differential equations that model chemical reaction networks. By classical quasi-steady state (QSS) reduction we understand the following familiar (heuristically motivated) mathematical procedure: Set the rate of change for certain (a priori chosen) variables equal to zero and use the resulting algebraic equations to obtain a system of smaller dimension for the remaining variables. This procedure will generally be valid only for certain parameter ranges. We start by showing that the reduction is accurate if and only if the corresponding parameter is what we call a QSS parameter value, and that the reduction is approximately accurate if and only if the corresponding parameter is close to a QSS parameter value. The QSS parameter values can be characterized by polynomial equations and inequations, hence parameter ranges for which QSS reduction is valid are accessible in an algorithmic manner. A defining characteristic of a QSS parameter value is that the algebraic variety defined by the QSS relations is invariant for the differential equation. A closer investigation of the associated systems shows the existence of further invariant sets; here singular perturbations enter the picture in a natural manner. We compare QSS reduction and singular perturbation reduction, and show that, while they do not agree in general, they do, up to lowest order in a small parameter, for a quite large and relevant class of examples. This observation, in turn, allows the computation of QSS reductions even in cases where an explicit resolution of the polynomial equations is not possible.
2012-09-03
use of so-called probability-one methods [22]. The significant advantage of homotopy method to compute steady state solutions is free of Courant ...A homotopy method based on WENO schemes for solving steady state problems of hyperbolic conservation laws Wenrui Hao∗ Jonathan D. Hauenstein† Chi...robustness of the new method . Keywords homotopy continuation, hyperbolic conservation laws, WENO scheme, steady state problems. ∗Department of Applied and
Stress-induced inhibition of translation independently of eIF2α phosphorylation.
Knutsen, Jon Halvor Jonsrud; Rødland, Gro Elise; Bøe, Cathrine Arnason; Håland, Tine Weise; Sunnerhagen, Per; Grallert, Beáta; Boye, Erik
2015-12-01
Exposure of fission yeast cells to ultraviolet (UV) light leads to inhibition of translation and phosphorylation of the eukaryotic initiation factor-2α (eIF2α). This phosphorylation is a common response to stress in all eukaryotes. It leads to inhibition of translation at the initiation stage and is thought to be the main reason why stressed cells dramatically reduce protein synthesis. Phosphorylation of eIF2α has been taken as a readout for downregulation of translation, but the role of eIF2α phosphorylation in the downregulation of general translation has not been much investigated. We show here that UV-induced global inhibition of translation in fission yeast cells is independent of eIF2α phosphorylation and the eIF2α kinase general control nonderepressible-2 protein (Gcn2). Also, in budding yeast and mammalian cells, the UV-induced translational depression is largely independent of GCN2 and eIF2α phosphorylation. Furthermore, exposure of fission yeast cells to oxidative stress generated by hydrogen peroxide induced an inhibition of translation that is also independent of Gcn2 and of eIF2α phosphorylation. Our findings show that stress-induced translational inhibition occurs through an unknown mechanism that is likely to be conserved through evolution.
Stress-induced inhibition of translation independently of eIF2α phosphorylation
Knutsen, Jon Halvor Jonsrud; Rødland, Gro Elise; Bøe, Cathrine Arnason; Håland, Tine Weise; Sunnerhagen, Per; Grallert, Beáta; Boye, Erik
2015-01-01
ABSTRACT Exposure of fission yeast cells to ultraviolet (UV) light leads to inhibition of translation and phosphorylation of the eukaryotic initiation factor-2α (eIF2α). This phosphorylation is a common response to stress in all eukaryotes. It leads to inhibition of translation at the initiation stage and is thought to be the main reason why stressed cells dramatically reduce protein synthesis. Phosphorylation of eIF2α has been taken as a readout for downregulation of translation, but the role of eIF2α phosphorylation in the downregulation of general translation has not been much investigated. We show here that UV-induced global inhibition of translation in fission yeast cells is independent of eIF2α phosphorylation and the eIF2α kinase general control nonderepressible-2 protein (Gcn2). Also, in budding yeast and mammalian cells, the UV-induced translational depression is largely independent of GCN2 and eIF2α phosphorylation. Furthermore, exposure of fission yeast cells to oxidative stress generated by hydrogen peroxide induced an inhibition of translation that is also independent of Gcn2 and of eIF2α phosphorylation. Our findings show that stress-induced translational inhibition occurs through an unknown mechanism that is likely to be conserved through evolution. PMID:26493332
There are no steady state processes in compaction
NASA Astrophysics Data System (ADS)
Dysthe, D. K.
2003-04-01
Compaction of sediments is normally thought to start with grain sliding and cataclastic grain crushing. Then the ductile dissolution-precipitation creep processes take over. Modeling of this process normally neglects all collective rearrangement processes and regard simple packings of grains that slowly deform by steady state pressure solution creep. From simple geometrical reasoning we know, however that imperfect packings of plastic grains must undergo rearrangement during compaction. Such rearrangement will drastically alter the microscopic, or "primitive processes" of compaction. Recent research has questioned the fundamental mechanisms ("primitive processes") of dissolution-precipitation creep. Do grain contacts heal or dissolve? Why is there asymmetric dissolution? Does pressure solution creep in single contacts ever reach steady state? Can transient free face dissolution feed back on pressure solution creep in the contacts? The emerging radical change in our understanding of dissolution-precipitation creep as a dynamic, transient process is driven by new experiments and reevaluation of the fundamental theory. The same change in viewpoint is necessary on all time and length scales. I will present experiments [1-8] and simulations [9-11] of complex compaction behaviour [1], transient primitive processes of pressure solution creep in the contacts [2-4], free face dissolution [5] and crack healing [6]. I will also show that macroscopic observation of compaction shows smooth, universal behaviour [7]. Microscopic observation of compaction shows transient collective behaviour at all scales. Evidence points in the direction that compaction is dominated by transient processes with interacting instabilities. The interaction causes intermittency or switching between processes. A new, more complex theory of compaction is necessary to explain how the cooperative microscopic phenomena contribute to the simple, universal, macroscopic behaviour. 1. Uri, L., et. al., in
Ho, Pang-Yen; Chuang, Guo-Syong; Chao, An-Chong; Li, Hsing-Ya
2005-05-01
The capacity of complex biochemical reaction networks (consisting of 11 coupled non-linear ordinary differential equations) to show multiple steady states, was investigated. The system involved esterification of ethanol and oleic acid by lipase in an isothermal continuous stirred tank reactor (CSTR). The Deficiency One Algorithm and the Subnetwork Analysis were applied to determine the steady state multiplicity. A set of rate constants and two corresponding steady states are computed. The phenomena of bistability, hysteresis and bifurcation are discussed. Moreover, the capacity of steady state multiplicity is extended to the family of the studied reaction networks.
Hopf and steady state bifurcation analysis in a ratio-dependent predator-prey model
NASA Astrophysics Data System (ADS)
Zhang, Lai; Liu, Jia; Banerjee, Malay
2017-03-01
In this paper, we perform spatiotemporal bifurcation analysis in a ratio-dependent predator-prey model and derive explicit conditions for the existence of non-constant steady states that emerge through steady state bifurcation from related constant steady states. These explicit conditions are numerically verified in details and further compared to those conditions ensuring Turing instability. We find that (1) Turing domain is identical to the parametric domain where there exists only steady state bifurcation, which implies that Turing patterns are stable non-constant steady states, but the opposite is not necessarily true; (2) In non-Turing domain, steady state bifurcation and Hopf bifurcation act in concert to determine the emergent spatial patterns, that is, non-constant steady state emerges through steady state bifurcation but it may be unstable if the destabilising effect of Hopf bifurcation counteracts the stabilising effect of diffusion, leading to non-stationary spatial patterns; (3) Coupling diffusion into an ODE model can significantly enrich population dynamics by inducing alternative non-constant steady states (four different states are observed, two stable and two unstable), in particular when diffusion interacts with different types of bifurcation; (4) Diffusion can promote species coexistence by saving species which otherwise goes to extinction in the absence of diffusion.
Bieri, Oliver
2011-02-01
Conceptually, the only flaw in the standard steady-state free precession theory is the assumption of quasi-instantaneous radio-frequency pulses, and 10-20% signal deviations from theory are observed for common balanced steady-state free precession protocols. This discrepancy in the steady-state signal can be resolved by a simple T(2) substitution taking into account reduced transverse relaxation effects during finite radio-frequency excitation. However, finite radio-frequency effects may also affect the transient phase of balanced steady-state free precession, its contrast or its spin-echo nature and thereby have an adverse effect on common steady-state free precession magnetization preparation methods. As a result, an in-depth understanding of finite radio-frequency effects is not only of fundamental theoretical interest but also has direct practical implications. In this article, an analytical solution for balanced steady-state free precession with finite radio-frequency pulses is derived for the transient phase (under ideal conditions) and in the steady state demonstrating that balanced steady-state free precession key features are preserved but revealing an unexpected dependency of finite radio-frequency effects on relaxation times for the transient decay. Finally, the mathematical framework reveals that finite radio-frequency theory can be understood as a generalization of alternating repetition time and fluctuating equilibrium steady-state free precession sequence schemes.
Steady state growth of E. Coli in low ammonium environment
NASA Astrophysics Data System (ADS)
Kim, Minsu; Deris, Barret; Zhang, Zhongge; Hwa, Terry
2011-03-01
Ammonium is the preferred nitrogen source for many microorganisms. In medium with low ammonium concentrations, enteric bacteria turn on the nitrogen responsive (ntr) genes to assimilate ammonium. Two proteins in E. coli, Glutamine synthetase (GS) and the Ammonium/methylammonium transporter AmtB play crucial roles in this regard. GS is the major ammonium assimilation enzyme below 1mM of NH4 + . AmtB is an inner membrane protein that transports NH4 + across the cell membrane against a concentration gradient. In order to study ammonium uptake at low NH4 + concentration at neutral pH, we developed a microfluidic flow chamber that maintains a homogenous nutrient environment during the course of exponential cell growth, even at very low concentration of nutrients. Cell growth can be accurately monitored using time-lapse microscopy. We followed steady state growth down to micro-molar range of NH4 + for the wild type and Δ amtB strains. The wild type strain is able to maintain the growth rate from 10mM down to a few uM of NH4 + , while the mutant exhibited reduced growth below ~ 20 ~uM of NH4 + . Simultaneous characterization of the expression levels of GS and AmtB using fluorescence reporters reveals that AmtB is turned on already at 1mM, but contributes to function only below ~ 30 ~uM in the wild-type. Down to ~ 20 ~uM of NH4 + , E.~coli can compensate the loss of AmtB by GS alone.
Steady-state and transient electronic dynamics in granular metals
NASA Astrophysics Data System (ADS)
Chen, Wei
In this thesis two very different approaches, steady state and transient, are taken to help understand the electronic dynamics in the nanogranular Cux(SiO2)1-x composite thin films. The electrical conductivity and thermopower are measured from 2 K to room temperature with the Cu volume fraction x varying from 1 down to 0.43. At low temperatures, a T dependence of the electrical conductivity is observed well above the percolation threshold due to the disorder-enhanced electron-electron interaction and as the metal-insulator transition is approached, the electrical conductivity assumes a T1/3 dependence. The thermopower is found to be small and rather insensitive to the degree of disorder in the system. It varies linearly with temperatures at both low and high temperatures. Annealing has considerable influence to the behavior of the electrical conductivity while introducing little changes to the thermopower. Femtosecond pump-probe experiments were performed on a series of Cu x(SiO2)1-x composite films with volume fraction x varying from 0.7 to 1.0 to study the reflectivity change DeltaR/R as a function of composition and temperature. It is discovered that DeltaR/R undergoes drastic changes as the metal content is lowered. Very small amount of SiO 2 inclusions can start to result in qualitatively different Delta R/R behavior from pure Cu. Changes in the dielectric constant of Cu are investigated and possible explanations for the DeltaR/R behaviors in the composite films are discussed.
A steady-state model of the lunar ejecta cloud
NASA Astrophysics Data System (ADS)
Christou, Apostolos
2014-05-01
Every airless body in the solar system is surrounded by a cloud of ejecta produced by the impact of interplanetary meteoroids on its surface [1]. Such ``dust exospheres'' have been observed around the Galilean satellites of Jupiter [2,3]. The prospect of long-term robotic and human operations on the Moon by the US and other countries has rekindled interest on the subject [4]. This interest has culminated with the - currently ongoing - investigation of the Moon's dust exosphere by the LADEE spacecraft [5]. Here a model is presented of a ballistic, collisionless, steady state population of ejecta launched vertically at randomly distributed times and velocities and moving under constant gravity. Assuming a uniform distribution of launch times I derive closed form solutions for the probability density functions (pdfs) of the height distribution of particles and the distribution of their speeds in a rest frame both at the surface and at altitude. The treatment is then extended to particle motion with respect to a moving platform such as an orbiting spacecraft. These expressions are compared with numerical simulations under lunar surface gravity where the underlying ejection speed distribution is (a) uniform (b) a power law. I discuss the predictions of the model, its limitations, and how it can be validated against near-surface and orbital measurements.[1] Gault, D. Shoemaker, E.M., Moore, H.J., 1963, NASA TN-D 1767. [2] Kruger, H., Krivov, A.V., Hamilton, D. P., Grun, E., 1999, Nature, 399, 558. [3] Kruger, H., Krivov, A.V., Sremcevic, M., Grun, E., 2003, Icarus, 164, 170. [4] Grun, E., Horanyi, M., Sternovsky, Z., 2011, Planetary and Space Science, 59, 1672. [5] Elphic, R.C., Hine, B., Delory, G.T., Salute, J.S., Noble, S., Colaprete, A., Horanyi, M., Mahaffy, P., and the LADEE Science Team, 2014, LPSC XLV, LPI Contr. 1777, 2677.
Experimental Realization of Nearly Steady-State Toroidal Electron Plasmas
NASA Astrophysics Data System (ADS)
Stoneking, M. R.
2008-11-01
Non-neutral plasmas are routinely confined in the uniform magnetic field of a Penning-Malmberg trap for arbitrarily long times and approach thermal equilibrium. Theory predicts that dynamically stable and therefore long-lived equilibria exist for non-neutral plasmas confined in the curved, non-uniform field of a toroidal trap, but that ultimately thermal equilibrium states do not exist. On long timescales, the poloidal ExB rotation through the non-uniform toroidal magnetic field leads to magnetic pumping transport. A new experiment has, for the first time, demonstrated the existence of a stable, long-lived (i.e. nearly steady-state) toroidal equilibrium for pure electron plasmas and is poised to observe the magnetic pumping transport mechanism. Electron plasmas with densities of order 10^6 cm-3 are trapped in the Lawrence Non-neutral Torus II for several seconds. LNT II is a high aspect ratio (Ro/a 10), partially toroidal trap (a 270^o arc with Bo=670 G). The m=1 diocotron mode is launched and detected using isolated segments of a fully-sectored conducting boundary and its frequency is used to determine the total trapped charge as a function of time. The observed confinement time ( 3 s) approaches the theoretical limit ( 6 s) set by the magnetic pumping transport mechanism of Crooks and O'Neil. We also present equilibrium modeling and numerical simulation of the toroidal m=1 mode constrained by experimental data. Future work includes the identification of the dominant transport mechanisms via confinement scaling experiments and measurement of the m=2 mode frequency, and development of a strategy for making a transition to fully toroidal confinement. J.P. Marler and M.R. Stoneking, Phys. Rev. Lett. 100, 155001 (2008). S.M. Crooks and T.M. O'Neil, Phys Plamas 3, 2533 (1996).
Nonequilibrium steady states in a model for prebiotic evolution
NASA Astrophysics Data System (ADS)
Wynveen, A.; Fedorov, I.; Halley, J. W.
2014-02-01
Some statistical features of steady states of a Kauffman-like model for prebiotic evolution are reported from computational studies. We postulate that the interesting "lifelike" states will be characterized by a nonequilibrium distribution of species and a time variable species self-correlation function. Selecting only such states from the population of final states produced by the model yields the probability of the appearance of such states as a function of a parameter p of the model. p is defined as the probability that a possible reaction in the the artificial chemistry actually appears in the network of chemical reactions. Small p corresponds to sparse networks utilizing a small fraction of the available reactions. We find that the probability of the appearance of such lifelike states exhibits a maximum as a function of p: at large p, most final states are in chemical equilibrium and hence are excluded by our criterion. At very small p, the sparseness of the network makes the probability of formation of any nontrivial dynamic final state low, yielding a low probability of production of lifelike states in this limit as well. We also report results on the diversity of the lifelike states (as defined here) that are produced. Repeated starts of the model evolution with different random number seeds in a given reaction network lead to final lifelike states which have a greater than random likelihood of resembling one another. Thus a form of "convergence" is observed. On the other hand, in different reaction networks with the same p, lifelike final states are statistically uncorrelated. In summary, the main results are (1) there is an optimal p or "sparseness" for production of lifelike states in our model—neither very dense nor very sparse networks are optimal—and (2) for a given p or sparseness, the resulting lifelike states can be extremely different. We discuss some possible implications for studies of the origin of life.
Impact of aquifer desaturation on steady-state river seepage
NASA Astrophysics Data System (ADS)
Morel-Seytoux, Hubert J.; Miracapillo, Cinzia; Mehl, Steffen
2016-02-01
Flow exchange between surface and ground water is of great importance be it for beneficial allocation and use of the water resources or for the proper exercise of water rights. That exchange can take place under a saturated or unsaturated flow regime. Which regimes occur depend on conditions in the vicinity of the interactive area. Withdrawals partially sustained by seepage may not bring about desaturation but greater amounts eventually will. The problem considered in this paper deals only with the steady-state case. It is meant as a first step toward a simple, yet accurate and physically based treatment of the transient situation. The primary purpose of the article is to provide simple criteria for determination of the initiation of desaturation in an aquifer originally in saturated hydraulic connection with a river or a recharge area. The extent of the unsaturated zone in the aquifer will increase with increasing withdrawals while at the same time the seepage rate from the river increases. However the seepage increase will stop once infiltration takes place strictly by gravity in the aquifer and is no longer opposed by the capillary rise from the water table below the riverbed. Following desaturation simple criteria are derived and simple analytical formulae provided to estimate the river seepage based on the position of the water table mound below the clogging layer and at some distance away from the river bank. They fully account for the unsaturated flow phenomena, including the existence of a drainage entry pressure. Two secondary objectives were to verify that (1) the assumption of uniform vertical flow through a clogging layer and that (2) the approximation of the water table mound below the seepage area as a flat surface were both reasonably legitimate. This approach will be especially advantageous for the implementation of the methodology in large-scale applications of integrated hydrologic models used for management.
Mulukutla, Bhanu Chandra; Yongky, Andrew; Grimm, Simon; Daoutidis, Prodromos; Hu, Wei-Shou
2015-01-01
Cultured mammalian cells exhibit elevated glycolysis flux and high lactate production. In the industrial bioprocesses for biotherapeutic protein production, glucose is supplemented to the culture medium to sustain continued cell growth resulting in the accumulation of lactate to high levels. In such fed-batch cultures, sometimes a metabolic shift from a state of high glycolysis flux and high lactate production to a state of low glycolysis flux and low lactate production or even lactate consumption is observed. While in other cases with very similar culture conditions, the same cell line and medium, cells continue to produce lactate. A metabolic shift to lactate consumption has been correlated to the productivity of the process. Cultures that exhibited the metabolic shift to lactate consumption had higher titers than those which didn't. However, the cues that trigger the metabolic shift to lactate consumption state (or low lactate production state) are yet to be identified. Metabolic control of cells is tightly linked to growth control through signaling pathways such as the AKT pathway. We have previously shown that the glycolysis of proliferating cells can exhibit bistability with well-segregated high flux and low flux states. Low lactate production (or lactate consumption) is possible only at a low glycolysis flux state. In this study, we use mathematical modeling to demonstrate that lactate inhibition together with AKT regulation on glycolysis enzymes can profoundly influence the bistable behavior, resulting in a complex steady-state topology. The transition from the high flux state to the low flux state can only occur in certain regions of the steady state topology, and therefore the metabolic fate of the cells depends on their metabolic trajectory encountering the region that allows such a metabolic state switch. Insights from such switch behavior present us with new means to control the metabolism of mammalian cells in fed-batch cultures.
In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli.
Yu, Xingye; Liu, Tiangang; Zhu, Fayin; Khosla, Chaitan
2011-11-15
Microbial fatty acid derivatives are emerging as promising alternatives to fossil fuel derived transportation fuels. Among bacterial fatty acid synthases (FAS), the Escherichia coli FAS is perhaps the most well studied, but little is known about its steady-state kinetic behavior. Here we describe the reconstitution of E. coli FAS using purified protein components and report detailed kinetic analysis of this reconstituted system. When all ketosynthases are present at 1 μM, the maximum rate of free fatty acid synthesis of the FAS exceeded 100 μM/ min. The steady-state turnover frequency was not significantly inhibited at high concentrations of any substrate or cofactor. FAS activity was saturated with respect to most individual protein components when their concentrations exceeded 1 μM. The exceptions were FabI and FabZ, which increased FAS activity up to concentrations of 10 μM; FabH and FabF, which decreased FAS activity at concentrations higher than 1 μM; and holo-ACP and TesA, which gave maximum FAS activity at 30 μM concentrations. Analysis of the S36T mutant of the ACP revealed that the unusual dependence of FAS activity on holo-ACP concentration was due, at least in part, to the acyl-phosphopantetheine moiety. MALDI-TOF mass spectrometry analysis of the reaction mixture further revealed medium and long chain fatty acyl-ACP intermediates as predominant ACP species. We speculate that one or more of such intermediates are key allosteric regulators of FAS turnover. Our findings provide a new basis for assessing the scope and limitations of using E. coli as a biocatalyst for the production of diesel-like fuels.
Rod Bundle Heat Transfer: Steady-State Steam Cooling Experiments
Spring, J.P.; McLaughlin, D.M.
2006-07-01
Through the joint efforts of the Pennsylvania State University and the United States Nuclear Regulatory Commission, an experimental rod bundle heat transfer (RBHT) facility was designed and built. The rod bundle consists of a 7 x 7 square pitch array with spacer grids and geometry similar to that found in a modern pressurized water reactor. From this facility, a series of steady-state steam cooling experiments were performed. The bundle inlet Reynolds number was varied from 1 400 to 30 000 over a pressure range from 1.36 to 4 bars (20 to 60 psia). The bundle inlet steam temperature was controlled to be at saturation for the specified pressure and the fluid exit temperature exceeded 550 deg. C in the highest power tests. One important quantity of interest is the local convective heat transfer coefficient defined in terms of the local bulk mean temperature of the flow, local wall temperature, and heat flux. Steam temperatures were measured at the center of selected subchannels along the length of the bundle by traversing miniaturized thermocouples. Using an analogy between momentum and energy transport, a method was developed for relating the local subchannel centerline temperature measurement to the local bulk mean temperature. Wall temperatures were measured using internal thermocouples strategically placed along the length of each rod and the local wall heat flux was obtained from an inverse conduction program. The local heat transfer coefficient was calculated from the data at each rod thermocouple location. The local heat transfer coefficients calculated for locations where the flow was fully developed were compared against several published correlations. The Weisman and El-Genk correlations were found to agree best with the RBHT steam cooling data, especially over the range of turbulent Reynolds numbers. The effect of spacer grids on the heat transfer enhancement was also determined from instrumentation placed downstream of the spacer grid locations. The local
Progress Towards High-Performance, Steady-State Spherical Torus
Lawrence Livermore National Laboratory
2004-01-04
Research on the spherical torus (or spherical tokamak) (ST) is being pursued to explore the scientific benefits of modifying the field line structure from that in more moderate aspect ratio devices, such as the conventional tokamak. The ST experiments are being conducted in various US research facilities including the MA-class National Spherical Torus Experiment (NSTX) at Princeton, and three medium sized ST research facilities: PEGASUS at University of Wisconsin, HIT-II at University of Washington, and CDX-U at Princeton. In the context of the fusion energy development path being formulated in the US, an ST-based Component Test Facility (CTF) and, ultimately a Demo device, are being discussed. For these, it is essential to develop high performance, steady-state operational scenarios. The relevant scientific issues are energy confinement, MHD stability at high beta ({beta}), non-inductive sustainment, Ohmic-solenoid-free start-up, and power and particle handling. In the confinement area, the NSTX experiments have shown that the confinement can be up to 50% better than the ITER-98-pby2 H-mode scaling, consistent with the requirements for an ST-based CTF and Demo. In NSTX, CTF-relevant average toroidal beta values {beta}{sub T} of up to 35% with a near unity central {beta}{sub T} have been obtained. NSTX will be exploring advanced regimes where {beta}{sub T} up to 40% can be sustained through active stabilization of resistive wall modes. To date, the most successful technique for non-inductive sustainment in NSTX is the high beta poloidal regime, where discharges with a high non-inductive fraction ({approx}60% bootstrap current+NBI current drive) were sustained over the resistive skin time. Research on radio-frequency (RF) based heating and current drive utilizing high harmonic fastwave and electron Bernstein wave is also pursued on NSTX, PEGASUS, and CDX-U. For non-inductive start-up, the coaxial helicity injection, developed in HIT/HIT-II, has been adopted on NSTX
40 CFR 92.130 - Determination of steady-state concentrations.
Code of Federal Regulations, 2013 CFR
2013-07-01
... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...
40 CFR 92.130 - Determination of steady-state concentrations.
Code of Federal Regulations, 2010 CFR
2010-07-01
... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...
40 CFR 92.130 - Determination of steady-state concentrations.
Code of Federal Regulations, 2011 CFR
2011-07-01
... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...
40 CFR 92.130 - Determination of steady-state concentrations.
Code of Federal Regulations, 2012 CFR
2012-07-01
... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...
40 CFR 92.130 - Determination of steady-state concentrations.
Code of Federal Regulations, 2014 CFR
2014-07-01
... concentrations. 92.130 Section 92.130 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR....130 Determination of steady-state concentrations. (a)(1) For HC and NOX emissions, a steady-state concentration measurement, measured after 300 seconds (or 840 seconds for notch 8) of testing shall be...
Constructive interference in steady-state/FIESTA-C clinical applications in neuroimaging.
Kulkarni, Makarand; Kulkami, Makarand
2011-04-01
High spatial resolution is one of the major problems in neuroimaging, particularly in cranial and spinal nerve imaging. Constructive interference in steady-state/fast imaging employing steady-state acquisition with phase cycling is a robust sequence in imaging the cranial and spinal nerve pathologies. This pictorial review is a concise article about the applications of this sequence in neuroimaging with clinical examples.
40 CFR 85.2230 - Steady state test dynamometer-EPA 91.
Code of Federal Regulations, 2010 CFR
2010-07-01
... 40 Protection of Environment 18 2010-07-01 2010-07-01 false Steady state test dynamometer-EPA 91. 85.2230 Section 85.2230 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR... Warranty Short Tests § 85.2230 Steady state test dynamometer—EPA 91. (a) Special calendar and model...
Phased Array Ghost Elimination (PAGE) for Segmented SSFP Imaging With Interrupted Steady-State
Kellman, Peter; Guttman, Michael A.; Herzka, Daniel A.; McVeigh, Elliot R.
2007-01-01
Steady-state free precession (SSFP) has recently proven to be valuable for cardiac imaging due to its high signal-to-noise ratio and blood-myocardium contrast. Data acquired using ECG-triggered, segmented sequences during the approach to steady-state, or return to steady-state after interruption, may have ghost artifacts due to periodic k-space distortion. Schemes involving several preparatory RF pulses have been proposed to restore steady-state, but these consume imaging time during early systole. Alternatively, the phased-array ghost elimination (PAGE) method may be used to remove ghost artifacts from the first several frames. PAGE was demonstrated for cardiac cine SSFP imaging with interrupted steady-state using a simple alpha/2 magnetization preparation and storage scheme and a spatial tagging preparation. PMID:12465121
Steady- and non-steady-state carbonate-silicate controls on atmospheric CO2
Sundquist, E.T.
1991-01-01
Two contrasting hypotheses have recently been proposed for the past long-term relation between atmospheric CO2 and the carbonate-silicate geochemical cycle. One approach (Berner, 1990) suggests that CO2 levels have varied in a manner that has maintained chemical weathering and carbonate sedimentation at a steady state with respect to tectonically controlled decarbonation reactions. A second approach (Raymo et al., 1988), applied specificlly to the late Cenozoic, suggests a decrease in CO2 caused by an uplift-induced increase in chemical weathering, without regard to the rate of decarbonation. According to the steady-state (first) hypothesis, increased weathering and carbonate sedimentation are generally associated with increasing atmospheric CO2, whereas the uplift (second) hypothesis implies decreasing CO2 under the same conditions. An ocean-atmosphere-sediment model has been used to assess the response of atmospheric CO2 and carbonate sedimentation to global perturbations in chemical weathering and decarbonation reactions. Although this assessment is theoretical and cannot yet be related to the geologic record, the model simulations compare steady-state and non-steady-state carbonate-silicate cycle response. The e-fold response time of the 'CO2-weathering' feedback mechanism is between 300 and 400 ka. The response of carbonate sedimentation is much more rapid. These response times provide a measure of the strength of steady-state assumptions, and imply that certain systematic relations are sustained throughout steady-state and non-steady-state scenarios for the carbonate-silicate cycle. The simulations suggest that feedbacks can maintain the system near a steady state, but that non-steady-state effects may contribute to long-term trends. The steady-state and uplift hypotheses are not necessarily incompatible over time scales of a few million years. ?? 1991.
On the use of steady-state signal equations for 2D TrueFISP imaging.
Coolen, Bram F; Heijman, Edwin; Nicolay, Klaas; Strijkers, Gustav J
2009-07-01
To explain the signal behavior in 2D-TrueFISP imaging, a slice excitation profile should be considered that describes a variation of effective flip angles and magnetization phases after excitation. These parameters can be incorporated into steady-state equations to predict the final signal within a pixel. The use of steady-state equations assumes that excitation occurs instantaneously, although in reality this is a nonlinear process. In addition, often the flip angle variation within the slice excitation profile is solely considered when using steady-state equations, while TrueFISP is especially known for its sensitivity to phase variations. The purpose of this study was therefore to evaluate the precision of steady-state equations in calculating signal intensities in 2D TrueFISP imaging. To that end, steady-state slice profiles and corresponding signal intensities were calculated as function of flip angle, RF phase advance and pulse shape. More complex Bloch simulations were considered as a gold standard, which described every excitation within the sequence until steady state was reached. They were used to analyze two different methods based on steady-state equations. In addition, measurements on phantoms were done with corresponding imaging parameters. Although the Bloch simulations described the steady-state slice profile formation better than methods based on steady-state equations, the latter performed well in predicting the steady-state signal resulting from it. In certain cases the phase variation within the slice excitation profile did not even have to be taken into account.
Mateyak, Maria K; Kinzy, Terri Goss
2013-08-23
Eukaryotic translation elongation factor 2 (eEF2) facilitates the movement of the peptidyl tRNA-mRNA complex from the A site of the ribosome to the P site during protein synthesis. ADP-ribosylation (ADP(R)) of eEF2 by bacterial toxins on a unique diphthamide residue inhibits its translocation activity, but the mechanism is unclear. We have employed a hormone-inducible diphtheria toxin (DT) expression system in Saccharomyces cerevisiae which allows for the rapid induction of ADP(R)-eEF2 to examine the effects of DT in vivo. ADP(R) of eEF2 resulted in a decrease in total protein synthesis consistent with a defect in translation elongation. Association of eEF2 with polyribosomes, however, was unchanged upon expression of DT. Upon prolonged exposure to DT, cells with an abnormal morphology and increased DNA content accumulated. This observation was specific to DT expression and was not observed when translation elongation was inhibited by other methods. Examination of these cells by electron microscopy indicated a defect in cell separation following mitosis. These results suggest that expression of proteins late in the cell cycle is particularly sensitive to inhibition by ADP(R)-eEF2.
A novel multiple frequency stimulation method for steady state VEP based brain computer interfaces.
Srihari Mukesh, T M; Jaganathan, V; Reddy, M Ramasubba
2006-01-01
The objective is to increase the number of selections in brain computer interfaces (BCI) by recording and analyzing the steady state visual evoked potential response to dual stimulation. A BCI translates the VEP signals into user commands. The frequency band from which stimulation frequency can be selected is limited for SSVEP. This paper discusses a method to increase the number of commands by using a suitable combination of frequencies for stimulation. A biopotential amplifier based on the driven right leg circuit (DRL) is used to record 60 s epochs of the SSVEP (O(z)-A(1)) on 15 subjects using simultaneous overlapped stimulation (6, 7, 12, 13 and 14 Hzs and corresponding half frequencies). The power spectrum of each recording is obtained by frequency domain averaging of 400 ms SSVEPs and the spectral peaks were normalized. The spectral peaks of the combination frequencies of stimulation are predominant compared to individual stimulating frequencies. This method increases the number of selections by using a limited number of stimulating frequencies in BCI. For example, six selections are possible by generating only three frequencies.
Efficient Steady-State Solution Techniques for Variably Saturated Groundwater Flow
NASA Astrophysics Data System (ADS)
Farthing, M. W.; Kees, C. E.; Coffey, T. S.; Kelley, C. T.; Miller, C. T.
2002-12-01
We consider the simulation of steady-state variably saturated groundwater flow using Richards' equation. The difficulties associated with solving Richards' equation numerically are well known. Most discretization approaches for Richards' equation lead to nonlinear systems that are large and difficult to solve. The solution of nonlinear systems for steady-state problems can be particularly challenging, since a good initial guess for the steady-state solution is often hard to obtain, and the resulting linear systems may be poorly scaled. Common approaches like modified Picard iteration or variations of Newton's method have their advantages but perform poorly with standard globalization techniques under certain conditions. Pseudo-transient continuation has been used in computational fluid dynamics for some time to obtain steady-state solutions for problems in which Newton's method with standard line-search strategies fails. It combines aspects of backward Euler time integration and Newton's method to select intermediate estimates of the steady-state solution. In this work, we examine the use of pseudo-transient continuation methods for Richards' equation. We evaluate their performance for steady-state problems in heterogeneous domains by comparing them with Newton's method using standard globalization techniques. We investigate the methods' performance with both direct and preconditioned Krylov iterative linear solvers. We then make recommendations for robust and efficient approaches to obtain steady-state solutions for Richards' equation under a variety of conditions.
Inhibiting translation elongation can aid genome duplication in Escherichia coli.
Myka, Kamila K; Hawkins, Michelle; Syeda, Aisha H; Gupta, Milind K; Meharg, Caroline; Dillingham, Mark S; Savery, Nigel J; Lloyd, Robert G; McGlynn, Peter
2016-12-11
Conflicts between replication and transcription challenge chromosome duplication. Escherichia coli replisome movement along transcribed DNA is promoted by Rep and UvrD accessory helicases with Δrep ΔuvrD cells being inviable under rapid growth conditions. We have discovered that mutations in a tRNA gene, aspT, in an aminoacyl tRNA synthetase, AspRS, and in a translation factor needed for efficient proline-proline bond formation, EF-P, suppress Δrep ΔuvrD lethality. Thus replication-transcription conflicts can be alleviated by the partial sacrifice of a mechanism that reduces replicative barriers, namely translating ribosomes that reduce RNA polymerase backtracking. Suppression depends on RelA-directed synthesis of (p)ppGpp, a signalling molecule that reduces replication-transcription conflicts, with RelA activation requiring ribosomal pausing. Levels of (p)ppGpp in these suppressors also correlate inversely with the need for Rho activity, an RNA translocase that can bind to emerging transcripts and displace transcription complexes. These data illustrate the fine balance between different mechanisms in facilitating gene expression and genome duplication and demonstrate that accessory helicases are a major determinant of this balance. This balance is also critical for other aspects of bacterial survival: the mutations identified here increase persistence indicating that similar mutations could arise in naturally occurring bacterial populations facing antibiotic challenge.
The condensation of ampholytes in steady state moving boundaries - Analysis by computer simulation
NASA Technical Reports Server (NTRS)
Mosher, Richard A.; Thormann, Wolfgang
1986-01-01
A digital simulation of the behavior of amphoteric sample components in moving steady state boundaries is presented. Complete computer simulation data, including profiles of concentration, conductivity and pH as functions of time, are given for both cationic and anionic electrolyte configurations which incorporate one amphoteric sample constituent. The condensation of ampholytes in steady state moving boundaries is shown to proceed via an isotachophoretic mechanism and not by isoelectric focusing. Mobility (velocity) relationships necessary for sample components to form steady state zones are discussed.
Davisson, V J; Schulz, A R
1985-01-01
The mitochondrial NAD(P)+ malic enzyme [EC 1.1.1.39, L-malate:NAD+ oxidoreductase (decarboxylating)] was purified from rabbit heart to a specific activity of 7 units (mumol/min)/mg at 23 degrees C. A study of the reductive carboxylation reaction indicates that this enzymic reaction is reversible. The rate of the reductive carboxylation reaction appears to be completely inhibited at an NADH concentration of 0.92 mM. A substrate saturation curve of this reaction with NADH as the varied substrate describes this inhibition. The apparent kinetic parameters for this reaction are Ka(NADH) = 239 microM and Vr = 1.1 mumol/min per mg at 23 degrees C. The steady-state product-inhibition patterns for pyruvate and NADH indicate a sequential binding of the substrates: NAD+ followed by L-malate. These data also indicate that NADH is the last product released. A steady-state kinetic model is proposed that incorporates NADH-enzyme dead-end complexes. PMID:3977837
Yao, Chung-Tay; Lai, Ching-Long; Hsieh, Hsiu-Shan; Chi, Chin-Wen; Yin, Shih-Jiun
2010-09-01
Alcohol dehydrogenase (ADH) catalyzes oxidation of ingested ethanol to acetaldehyde, the first step in hepatic metabolism. The purpose of this study was to establish an ex vivo rat liver perfusion system under defined and verified steady states with respect to the metabolites and the metabolic rates, and to quantitatively correlate the observed rates with simulations based on the kinetic mechanism-based rate equations of rat liver ADH. Class I ADH1 was isolated from male Sprague-Dawley rats and characterized by steady-state kinetics in the Krebs-Ringer perfusion buffer with supplements. Nonrecirculating liver perfusion with constant input of ethanol at near physiological hepatic blood flow rate was performed in situ. Ethanol and the related metabolites acetaldehyde, acetate, lactate, and pyruvate in perfusates were determined. Results of the initial velocity, product, and dead-end inhibition studies showed that rat ADH1 conformed to the Theorell-Chance Ordered Bi Bi mechanism. Steady-state metabolism of ethanol in the perfused liver maintained up to 3h as evidenced by the steady-state levels of ethanol and metabolites in the effluent, and the steady-state ethanol disappearance rates and acetate production rates. The changes of the metabolic rates were qualitatively and in general quantitatively correlated to the results from simulations with the kinetic rate equations of ADH1 under a wide range of ethanol, in the presence of competitive inhibitor 4-methylpyrazole and of uncompetitive inhibitor isobutyramide. Preliminary flux control analysis estimated that apparent C(ADH)(J) in the perfused liver may approximate 0.7 at constant infusion with 1-2 mM ethanol, suggesting that ADH plays a major but not the exclusive role in governing hepatic ethanol metabolism. The reported steady-state rat liver perfusion system may potentially be applicable to other drug or drug-ethanol interaction studies.
Determination of the Nonequilibrium Steady State Emerging from a Defect
NASA Astrophysics Data System (ADS)
Bertini, Bruno; Fagotti, Maurizio
2016-09-01
We consider the nonequilibrium time evolution of a translationally invariant state under a Hamiltonian with a localized defect. We discern the situations where a light cone spreads out from the defect and separates the system into regions with macroscopically different properties. We identify the light cone and propose a procedure to obtain a (quasi)stationary state describing the late time dynamics of local observables. As an explicit example, we study the time evolution generated by the Hamiltonian of the transverse-field Ising chain with a local defect that cuts the interaction between two sites (a quench of the boundary conditions alongside a global quench). We solve the dynamics exactly and show that the late time properties can be obtained with the general method proposed.
Absolute Steady-State Thermal Conductivity Measurements by Use of a Transient Hot-Wire System.
Roder, H M; Perkins, R A; Laesecke, A; Nieto de Castro, C A
2000-01-01
A transient hot-wire apparatus was used to measure the thermal conductivity of argon with both steady-state and transient methods. The effects of wire diameter, eccentricity of the wire in the cavity, axial conduction, and natural convection were accounted for in the analysis of the steady-state measurements. Based on measurements on argon, the relative uncertainty at the 95 % level of confidence of the new steady-state measurements is 2 % at low densities. Using the same hot wires, the relative uncertainty of the transient measurements is 1 % at the 95 % level of confidence. This is the first report of thermal conductivity measurements made by two different methods in the same apparatus. The steady-state method is shown to complement normal transient measurements at low densities, particularly for fluids where the thermophysical properties at low densities are not known with high accuracy.
A closed-loop control scheme for steering steady states of glycolysis and glycogenolysis pathway.
Panja, Surajit; Patra, Sourav; Mukherjee, Anirban; Basu, Madhumita; Sengupta, Sanghamitra; Dutta, Pranab K
2013-01-01
Biochemical networks normally operate in the neighborhood of one of its multiple steady states. It may reach from one steady state to other within a finite time span. In this paper, a closed-loop control scheme is proposed to steer states of the glycolysis and glycogenolysis (GG) pathway from one of its steady states to other. The GG pathway is modeled in the synergism and saturation system formalism, known as S-system. This S-system model is linearized into the controllable Brunovsky canonical form using a feedback linearization technique. For closed-loop control, the linear-quadratic regulator (LQR) and the linear-quadratic gaussian (LQG) regulator are invoked to design a controller for tracking prespecified steady states. In the feedback linearization technique, a global diffeomorphism function is proposed that facilitates in achieving the regulation requirement. The robustness of the regulated GG pathway is studied considering input perturbation and with measurement noise.
Spin-locked balanced steady-state free-precession (slSSFP).
Witschey, Walter R T; Borthakur, Ari; Elliott, Mark A; Magland, Jeremy; McArdle, Erin L; Wheaton, Andrew; Reddy, Ravinder
2009-10-01
A spin-locked balanced steady-state free-precession (slSSFP) pulse sequence is described that combines a balanced gradient-echo acquisition with an off-resonance spin-lock pulse for fast MRI. The transient and steady-state magnetization trajectory was solved numerically using the Bloch equations and was shown to be similar to balanced steady-state free-precession (bSSFP) for a range of T(2)/T(1) and flip angles, although the slSSFP steady-state could be maintained with considerably lower radio frequency (RF) power. In both simulations and brain scans performed at 7T, slSSFP was shown to exhibit similar contrast and signal-to-noise ratio (SNR) efficiency to bSSFP, but with significantly lower power.
Technical challenges in the construction of the steady-state stellarator Wendelstein 7-X
Bosch, H.-S.; Wolf, R. C.; Andreeva, T.; Cardella, A; Erckmann, V.; Gantenbein, G; Hathiramani, D; Kasparek, W; Klinger, T.; Koenig, R; Kornejew, P; Laqua, H P; Lechte, C; Michel, G; Peacock, A.; Sunn Pedersen, T; Thumm, M; Turkin, Yu.; Wegener, Lutz; Werner, A.; Zhang, D; Beidler, C.; Bozhenkov, S.; Brown, T.; Geiger, J.; Harris, Jeffrey H; Heitzenroeder, P.; Lumsdaine, Arnold; Maassberg, H.; Marushchenko, N B; Neilson, G. H.; Otte, M; Rummel, Thomas; Spong, Donald A; Tretter, Jorg
2013-01-01
The next step in the Wendelstein stellarator line is the large superconducting device Wendelstein 7-X, currently under construction in Greifswald, Germany. Steady-state operation is an intrinsic feature of stellarators, and one key element of the Wendelstein 7-X mission is to demonstrate steady-state operation under plasma conditions relevant for a fusion power plant. Steady-state operation of a fusion device, on the one hand, requires the implementation of special technologies, giving rise to technical challenges during the design, fabrication and assembly of such a device. On the other hand, also the physics development of steady-state operation at high plasma performance poses a challenge and careful preparation. The electron cyclotron resonance heating system, diagnostics, experiment control and data acquisition are prepared for plasma operation lasting 30 min. This requires many new technological approaches for plasma heating and diagnostics as well as new concepts for experiment control and data acquisition.
Technical challenges in the construction of the steady-state stellarator Wendelstein 7-X
NASA Astrophysics Data System (ADS)
Bosch, H.-S.; Wolf, R. C.; Andreeva, T.; Baldzuhn, J.; Birus, D.; Bluhm, T.; Bräuer, T.; Braune, H.; Bykov, V.; Cardella, A.; Durodié, F.; Endler, M.; Erckmann, V.; Gantenbein, G.; Hartmann, D.; Hathiramani, D.; Heimann, P.; Heinemann, B.; Hennig, C.; Hirsch, M.; Holtum, D.; Jagielski, J.; Jelonnek, J.; Kasparek, W.; Klinger, T.; König, R.; Kornejew, P.; Kroiss, H.; Krom, J. G.; Kühner, G.; Laqua, H.; Laqua, H. P.; Lechte, C.; Lewerentz, M.; Maier, J.; McNeely, P.; Messiaen, A.; Michel, G.; Ongena, J.; Peacock, A.; Pedersen, T. S.; Riedl, R.; Riemann, H.; Rong, P.; Rust, N.; Schacht, J.; Schauer, F.; Schroeder, R.; Schweer, B.; Spring, A.; Stäbler, A.; Thumm, M.; Turkin, Y.; Wegener, L.; Werner, A.; Zhang, D.; Zilker, M.; Akijama, T.; Alzbutas, R.; Ascasibar, E.; Balden, M.; Banduch, M.; Baylard, Ch.; Behr, W.; Beidler, C.; Benndorf, A.; Bergmann, T.; Biedermann, C.; Bieg, B.; Biel, W.; Borchardt, M.; Borowitz, G.; Borsuk, V.; Bozhenkov, S.; Brakel, R.; Brand, H.; Brown, T.; Brucker, B.; Burhenn, R.; Buscher, K.-P.; Caldwell-Nichols, C.; Cappa, A.; Cardella, A.; Carls, A.; Carvalho, P.; Ciupiński, Ł.; Cole, M.; Collienne, J.; Czarnecka, A.; Czymek, G.; Dammertz, G.; Dhard, C. P.; Davydenko, V. I.; Dinklage, A.; Drevlak, M.; Drotziger, S.; Dudek, A.; Dumortier, P.; Dundulis, G.; Eeten, P. v.; Egorov, K.; Estrada, T.; Faugel, H.; Fellinger, J.; Feng, Y.; Fernandes, H.; Fietz, W. H.; Figacz, W.; Fischer, F.; Fontdecaba, J.; Freund, A.; Funaba, T.; Fünfgelder, H.; Galkowski, A.; Gates, D.; Giannone, L.; García Regaña, J. M.; Geiger, J.; Geißler, S.; Greuner, H.; Grahl, M.; Groß, S.; Grosman, A.; Grote, H.; Grulke, O.; Haas, M.; Haiduk, L.; Hartfuß, H.-J.; Harris, J. H.; Haus, D.; Hein, B.; Heitzenroeder, P.; Helander, P.; Heller, R.; Hidalgo, C.; Hildebrandt, D.; Höhnle, H.; Holtz, A.; Holzhauer, E.; Holzthüm, R.; Huber, A.; Hunger, H.; Hurd, F.; Ihrke, M.; Illy, S.; Ivanov, A.; Jablonski, S.; Jaksic, N.; Jakubowski, M.; Jaspers, R.; Jensen, H.; Jenzsch, H.; Kacmarczyk, J.; Kaliatk, T.; Kallmeyer, J.; Kamionka, U.; Karaleviciu, R.; Kern, S.; Keunecke, M.; Kleiber, R.; Knauer, J.; Koch, R.; Kocsis, G.; Könies, A.; Köppen, M.; Koslowski, R.; Koshurinov, J.; Krämer-Flecken, A.; Krampitz, R.; Kravtsov, Y.; Krychowiak, M.; Krzesinski, G.; Ksiazek, I.; Kubkowska, M.; Kus, A.; Langish, S.; Laube, R.; Laux, M.; Lazerson, S.; Lennartz, M.; Li, C.; Lietzow, R.; Lohs, A.; Lorenz, A.; Louche, F.; Lubyako, L.; Lumsdaine, A.; Lyssoivan, A.; Maaßberg, H.; Marek, P.; Martens, C.; Marushchenko, N.; Mayer, M.; Mendelevitch, B.; Mertens, Ph.; Mikkelsen, D.; Mishchenko, A.; Missal, B.; Mizuuchi, T.; Modrow, H.; Mönnich, T.; Morizaki, T.; Murakami, S.; Musielok, F.; Nagel, M.; Naujoks, D.; Neilson, H.; Neubauer, O.; Neuner, U.; Nocentini, R.; Noterdaeme, J.-M.; Nührenberg, C.; Obermayer, S.; Offermanns, G.; Oosterbeek, H.; Otte, M.; Panin, A.; Pap, M.; Paquay, S.; Pasch, E.; Peng, X.; Petrov, S.; Pilopp, D.; Pirsch, H.; Plaum, B.; Pompon, F.; Povilaitis, M.; Preinhaelter, J.; Prinz, O.; Purps, F.; Rajna, T.; Récsei, S.; Reiman, A.; Reiter, D.; Remmel, J.; Renard, S.; Rhode, V.; Riemann, J.; Rimkevicius, S.; Riße, K.; Rodatos, A.; Rodin, I.; Romé, M.; Roscher, H.-J.; Rummel, K.; Rummel, Th.; Runov, A.; Ryc, L.; Sachtleben, J.; Samartsev, A.; Sanchez, M.; Sano, F.; Scarabosio, A.; Schmid, M.; Schmitz, H.; Schmitz, O.; Schneider, M.; Schneider, W.; Scheibl, L.; Scholz, M.; Schröder, G.; Schröder, M.; Schruff, J.; Schumacher, H.; Shikhovtsev, I. V.; Shoji, M.; Siegl, G.; Skodzik, J.; Smirnow, M.; Speth, E.; Spong, D. A.; Stadler, R.; Sulek, Z.; Szabó, V.; Szabolics, T.; Szetefi, T.; Szökefalvi-Nagy, Z.; Tereshchenko, A.; Thomsen, H.; Thumm, M.; Timmermann, D.; Tittes, H.; Toi, K.; Tournianski, M.; Toussaint, U. v.; Tretter, J.; Tulipán, S.; Turba, P.; Uhlemann, R.; Urban, J.; Urbonavicius, E.; Urlings, P.; Valet, S.; Van Eester, D.; Van Schoor, M.; Vervier, M.; Viebke, H.; Vilbrandt, R.; Vrancken, M.; Wauters, T.; Weissgerber, M.; Weiß, E.; Weller, A.; Wendorf, J.; Wenzel, U.; Windisch, T.; Winkler, E.; Winkler, M.; Wolowski, J.; Wolters, J.; Wrochna, G.; Xanthopoulos, P.; Yamada, H.; Yokoyama, M.; Zacharias, D.; Zajac, J.; Zangl, G.; Zarnstorff, M.; Zeplien, H.; Zoletnik, S.; Zuin, M.
2013-12-01
The next step in the Wendelstein stellarator line is the large superconducting device Wendelstein 7-X, currently under construction in Greifswald, Germany. Steady-state operation is an intrinsic feature of stellarators, and one key element of the Wendelstein 7-X mission is to demonstrate steady-state operation under plasma conditions relevant for a fusion power plant. Steady-state operation of a fusion device, on the one hand, requires the implementation of special technologies, giving rise to technical challenges during the design, fabrication and assembly of such a device. On the other hand, also the physics development of steady-state operation at high plasma performance poses a challenge and careful preparation. The electron cyclotron resonance heating system, diagnostics, experiment control and data acquisition are prepared for plasma operation lasting 30 min. This requires many new technological approaches for plasma heating and diagnostics as well as new concepts for experiment control and data acquisition.
On the theory of steady-state crystallization with a non-equilibrium mushy layer
NASA Astrophysics Data System (ADS)
Alexandrov, D. V.; Alexandrova, I. V.; Ivanov, A. A.
2016-12-01
Complete analytical solutions of nonlinear equations describing the steady-state directional crystallization of binary melts with a nonequilibrium mushy layer, where the processes of nucleation and growth of crystals occur, are constructed.
Quasi steady-state aerodynamic model development for race vehicle simulations
NASA Astrophysics Data System (ADS)
Mohrfeld-Halterman, J. A.; Uddin, M.
2016-01-01
Presented in this paper is a procedure to develop a high fidelity quasi steady-state aerodynamic model for use in race car vehicle dynamic simulations. Developed to fit quasi steady-state wind tunnel data, the aerodynamic model is regressed against three independent variables: front ground clearance, rear ride height, and yaw angle. An initial dual range model is presented and then further refined to reduce the model complexity while maintaining a high level of predictive accuracy. The model complexity reduction decreases the required amount of wind tunnel data thereby reducing wind tunnel testing time and cost. The quasi steady-state aerodynamic model for the pitch moment degree of freedom is systematically developed in this paper. This same procedure can be extended to the other five aerodynamic degrees of freedom to develop a complete six degree of freedom quasi steady-state aerodynamic model for any vehicle.
Decoding of the sound frequency from the steady-state neural activities in rat auditory cortex.
Shiramatsu, Tomoyo I; Noda, Takahiro; Kanzaki, Ryohei; Takahashi, Hirokazu
2013-01-01
In the auditory cortex, onset activities have been extensively investigated as a cortical representation of sound information such as sound frequency. Yet, less attention has been paid to date to steady-state activities following the onset activities. In this study, we used machine learning to investigate whether steady-state activities in the presence of continuous sounds represent the sound frequency. Sparse Logistic Regression (SLR) decoded the sound frequency from band specific power or phase locking value (PLV) of local field potentials (LFP) from the fourth layer of the auditory cortex of anesthetized rats. Consequently, we found that SLR was able to decode the sound frequency from steady-state neural activities as well as onset activities. This result demonstrates that the steady-state activities contain information about the sound such as sound frequency.
Effects of various salts on the steady-state enzymatic activity of E. coli alkaline phosphatase.
Poe, R W; Sangadala, V S; Brewer, J M
1993-05-15
Seventeen salts were tested at various concentrations for their effects on E. coli alkaline phosphatase steady-state activity. Three effects were distinguished: a general ionic strength effect, and weaker cation and anion effects. 1. All salts tested, including those with "noninteracting" cations and anions, stimulate alkaline phosphatase activity usually ca. 100% at moderate (0.05-0.3 M) concentrations. 2. Cations such as Na+ and Li+ produce further increases in activity at concentrations up to 1 M. The noninteracting cations tetramethylammonium and tetrapropylammonium produce lower activities at these concentrations. These do not provide the secondary stimulatory effect of cations such as Na+ or Li+. 3. Anions associated with greater "salting in" effectiveness such as thiocyanate also reduce activity at ca. 1 M concentrations. These latter effects are not dependent on protein concentration so they probably do not involve subunit dissociation. There is little effect on the fluorescence or fluorescence-polarization spectrum of the enzyme so there is no general effect of 1 M salts on the conformation of the protein. The Michaelis constant for the substrate, p-nitrophenylphosphate, and inhibition constant for inorganic phosphate are increased to some extent by salts, but the increase in activity is due to an increase in Vmax. Our working hypothesis is that increased ionic strength weakens electrostatic interactions, enabling noncovalently bound phosphate to dissociate more rapidly.
The Effects of High Steady State Auxin Levels on Root Cell Elongation in Brachypodium[OPEN
Pacheco-Villalobos, David; Tamaki, Takayuki; Gujas, Bojan; Jaspert, Nina; Oecking, Claudia; Bulone, Vincent; Hardtke, Christian S.
2016-01-01
The long-standing Acid Growth Theory of plant cell elongation posits that auxin promotes cell elongation by stimulating cell wall acidification and thus expansin action. To date, the paucity of pertinent genetic materials has precluded thorough analysis of the importance of this concept in roots. The recent isolation of mutants of the model grass species Brachypodium distachyon with dramatically enhanced root cell elongation due to increased cellular auxin levels has allowed us to address this question. We found that the primary transcriptomic effect associated with elevated steady state auxin concentration in elongating root cells is upregulation of cell wall remodeling factors, notably expansins, while plant hormone signaling pathways maintain remarkable homeostasis. These changes are specifically accompanied by reduced cell wall arabinogalactan complexity but not by increased proton excretion. On the contrary, we observed a tendency for decreased rather than increased proton extrusion from root elongation zones with higher cellular auxin levels. Moreover, similar to Brachypodium, root cell elongation is, in general, robustly buffered against external pH fluctuation in Arabidopsis thaliana. However, forced acidification through artificial proton pump activation inhibits root cell elongation. Thus, the interplay between auxin, proton pump activation, and expansin action may be more flexible in roots than in shoots. PMID:27169463
Steady-state existence of passive vector fields under the Kraichnan model.
Arponen, Heikki
2010-03-01
The steady-state existence problem for Kraichnan advected passive vector models is considered for isotropic and anisotropic initial values in arbitrary dimension. The models include the magnetohydrodynamic (MHD) equations, linear pressure model, and linearized Navier-Stokes (LNS) equations. In addition to reproducing the previously known results for the MHD model, we obtain the values of the Kraichnan model roughness parameter xi for which the LNS steady state exists.
Steady-state ab initio laser theory for N-level lasers.
Cerjan, Alexander; Chong, Yidong; Ge, Li; Stone, A Douglas
2012-01-02
We show that Steady-state Ab initio Laser Theory (SALT) can be applied to find the stationary multimode lasing properties of an N-level laser. This is achieved by mapping the N-level rate equations to an effective two-level model of the type solved by the SALT algorithm. This mapping yields excellent agreement with more computationally demanding N-level time domain solutions for the steady state.
Bifurcation analysis of steady-state flows in the lid-driven cavity
NASA Astrophysics Data System (ADS)
Nuriev, A. N.; Egorov, A. G.; Zaitseva, O. N.
2016-12-01
The paper is devoted to the study of the non-uniqueness issues of a steady-state flow in the square lid-driven cavity. A range 0\\lt {Re} \\lt 20000 of Reynolds numbers is considered in which a numerical bifurcation analysis is carried out. The analysis allows us to localize several branches of the steady-state solution and also to investigate their stability.
Steady-state entanglement of a Bose-Einstein condensate and a nanomechanical resonator
Asjad, Muhammad; Saif, Farhan
2011-09-15
We analyze the steady-state entanglement between Bose-Einstein condensate trapped inside an optical cavity with a moving end mirror (nanomechanical resonator) driven by a single mode laser. The quantized laser field mediates the interaction between the Bose-Einstein condensate and nanomechanical resonator. In particular, we study the influence of temperature on the entanglement of the coupled system, and note that the steady-state entanglement is fragile with respect to temperature.
Steady-state 2. pi. pulses under conditions of passive locking of laser modes
Komarov, K.P.; Ugozhaev, V.D.
1984-06-01
A theoretical study is made of laser mode locking in the regime of self-induced transparency of a passive filter. It is shown that there is a solution in the form of ultrashort steady-state 2..pi.. pulses. The range of stability of this regime and its characteristics are determined. By way of example, estimates are obtained of parameters of a steady-state pulse emitted by an alexandrite laser with a potassium absorption cell.
The effect of oxygen on denitrification during steady-state growth of Paracoccus halodenitrificans
NASA Technical Reports Server (NTRS)
Hochstein, L. I.; Betlach, M.; Kritikos, G.
1984-01-01
Steady-state cultures of Paracoccus halodenitrificans were grown anaerobically prior to establishing steady states at different concentrations of oxygen. In the absence of oxygen, nitrate-limited cultures produced dinitrogen, and as the oxygen supply increased, these cultures produced nitrous oxide, then nitrite. These changes reflected two phenomena: the inactivation of nitrous oxide reductase by oxygen and the diversion of electrons from nitrite to oxygen.
Periodically driven Kondo impurity in nonequilibrium steady states
NASA Astrophysics Data System (ADS)
Iwahori, Koudai; Kawakami, Norio
2016-12-01
We study the nonequilibrium dynamics of a periodically driven anisotropic Kondo impurity model. The periodic time dependence is introduced for a local magnetic field which couples to the impurity spin and also for an in-plane exchange interaction. We obtain the exact results on the time evolution for arbitrary periodic time dependence at the special point in the parameter space known as the Toulouse limit. We first consider a specific case where the local magnetic field is periodically switched on and off. When the driving period is much shorter than the inverse of the Kondo temperature, an intriguing oscillating behavior (resonance phenomenon) emerges in the time average of the impurity spin polarization with increasing the local magnetic field intensity. By taking the high-frequency limit of the external driving, we elucidate that the system recovers the translational invariance in time and can be described by a mixture of the zero-temperature and infinite-temperature properties. In certain cases, the system is governed by either zero-temperature or infinite-temperature properties and, therefore, can be properly described by the corresponding equilibrium state.
Steady state effects in a two-pulse diffusion-weighted sequence
Zubkov, Mikhail; Stait-Gardner, Timothy; Price, William S.; Stilbs, Peter
2015-04-21
In conventional nuclear magnetic resonance (NMR) diffusion measurements a significant amount of experimental time is used up by magnetization recovery, serving to prevent the formation of the steady state, as in the latter case the manifestation of diffusion is modulated by multiple applications of the pulse sequence and conventional diffusion coefficient inference procedures are generally not applicable. Here, an analytical expression for diffusion-related effects in a two-pulse NMR experiment (e.g., pulsed-gradient spin echo) in the steady state mode (with repetition times less than the longitudinal relaxation time of the sample) is derived by employing a Fourier series expansion within the solution of the Bloch-Torrey equations. Considerations are given for the transition conditions between the full relaxation and the steady state experiment description. The diffusion coefficient of a polymer solution (polyethylene glycol) is measured by a two-pulse sequence in the full relaxation mode and for a range of repetition times, approaching the rapid steady state experiment. The precision of the fitting employing the presented steady state solution by far exceeds that of the conventional fitting. Additionally, numerical simulations are performed yielding results strongly supporting the proposed description of the NMR diffusion measurements in the steady state.
Efficient steady-state solution techniques for variably saturated groundwater flow
NASA Astrophysics Data System (ADS)
Farthing, Matthew W.; Kees, Christopher E.; Coffey, Todd S.; Kelley, C. T.; Miller, Cass T.
We consider the simulation of steady-state variably saturated groundwater flow using Richards' equation (RE). The difficulties associated with solving RE numerically are well known. Most discretization approaches for RE lead to nonlinear systems that are large and difficult to solve. The solution of nonlinear systems for steady-state problems can be particularly challenging, since a good initial guess for the steady-state solution is often hard to obtain, and the resulting linear systems may be poorly scaled. Common approaches like Picard iteration or variations of Newton's method have their advantages but perform poorly with standard globalization techniques under certain conditions. Pseudo-transient continuation has been used in computational fluid dynamics for some time to obtain steady-state solutions for problems in which Newton's method with standard line-search strategies fails. Here, we examine the use of pseudo-transient continuation as well as Newton's method combined with standard globalization techniques for steady-state problems in heterogeneous domains. We investigate the methods' performance with direct and preconditioned Krylov iterative linear solvers. We then make recommendations for robust and efficient approaches to obtain steady-state solutions for RE under a range of conditions.
Potyviral VPg enhances viral RNA Translation and inhibits reporter mRNA translation in planta.
Eskelin, Katri; Hafrén, Anders; Rantalainen, Kimmo I; Mäkinen, Kristiina
2011-09-01
Viral protein genome-linked (VPg) plays a central role in several stages of potyvirus infection. This study sought to answer questions about the role of Potato virus A (PVA; genus Potyvirus) VPg in viral and host RNA expression. When expressed in Nicotiana benthamiana leaves in trans, a dual role of VPg in translation is observed. It repressed the expression of monocistronic luciferase (luc) mRNA and simultaneously induced a significant upregulation in the expression of both replicating and nonreplicating PVA RNAs. This enhanced viral gene expression was due at least to the 5' untranslated region (UTR) of PVA RNA, eukaryotic initiation factors 4E and iso 4E [eIF4E/eIF(iso)4E], and the presence of a sufficient amount of VPg. Coexpression of VPg with viral RNA increased the viral RNA amount, which was not the case with the monocistronic mRNA. Both mutations at certain lysine residues in PVA VPg and eIF4E/eIF(iso)4E depletion reduced its ability to upregulate the viral RNA expression. These modifications were also involved in VPg-mediated downregulation of monocistronic luc expression. These results suggest that VPg can titrate eIF4Es from capped monocistronic RNAs. Because VPg-mediated enhancement of viral gene expression required eIF4Es, it is possible that VPg directs eIF4Es to promote viral RNA expression. From this study it is evident that VPg can serve as a specific regulator of PVA expression by boosting the viral RNA amounts as well as the accumulation of viral translation products. Such a mechanism could function to protect viral RNA from being degraded and to secure efficient production of coat protein (CP) for virion formation.
Hempstead, Andrew D; Isberg, Ralph R
2015-12-08
Cells of the innate immune system recognize bacterial pathogens by detecting common microbial patterns as well as pathogen-specific activities. One system that responds to these stimuli is the IRE1 branch of the unfolded protein response (UPR), a sensor of endoplasmic reticulum (ER) stress. Activation of IRE1, in the context of Toll-like receptor (TLR) signaling, induces strong proinflammatory cytokine induction. We show here that Legionella pneumophila, an intravacuolar pathogen that replicates in an ER-associated compartment, blocks activation of the IRE1 pathway despite presenting pathogen products that stimulate this response. L. pneumophila TLR ligands induced the splicing of mRNA encoding XBP1s, the main target of IRE1 activity. L. pneumophila was able to inhibit both chemical and bacterial induction of XBP1 splicing via bacterial translocated proteins that interfere with host protein translation. A strain lacking five translocated translation elongation inhibitors was unable to block XBP1 splicing, but this could be rescued by expression of a single such inhibitor, consistent with limitation of the response by translation elongation inhibitors. Chemical inhibition of translation elongation blocked pattern recognition receptor-mediated XBP1 splicing, mimicking the effects of the bacterial translation inhibitors. In contrast, host cell-promoted inhibition of translation initiation in response to the pathogen was ineffective in blocking XBP1 splicing, demonstrating the need for the elongation inhibitors for protection from the UPR. The inhibition of host translation elongation may be a common strategy used by pathogens to limit the innate immune response by interfering with signaling via the UPR.
ERIC Educational Resources Information Center
Kosman, Daniel J.
2009-01-01
The steady-state is a fundamental aspect of biochemical pathways in cells; indeed, the concept of steady-state is a definition of life itself. In a simple enzyme kinetic scheme, the steady-state condition is easy to define analytically but experimentally often difficult to capture because of its evanescent quality; the initial, constant velocity…
Steady state, erosional continuity, and the topography of landscapes developed in layered rocks
NASA Astrophysics Data System (ADS)
Perne, Matija; Covington, Matthew D.; Thaler, Evan A.; Myre, Joseph M.
2017-01-01
The concept of topographic steady state has substantially informed our understanding of the relationships between landscapes, tectonics, climate, and lithology. In topographic steady state, erosion rates are equal everywhere, and steepness adjusts to enable equal erosion rates in rocks of different strengths. This conceptual model makes an implicit assumption of vertical contacts between different rock types. Here we hypothesize that landscapes in layered rocks will be driven toward a state of erosional continuity, where retreat rates on either side of a contact are equal in a direction parallel to the contact rather than in the vertical direction. For vertical contacts, erosional continuity is the same as topographic steady state, whereas for horizontal contacts it is equivalent to equal rates of horizontal retreat on either side of a rock contact. Using analytical solutions and numerical simulations, we show that erosional continuity predicts the form of flux steady-state landscapes that develop in simulations with horizontally layered rocks. For stream power erosion, the nature of continuity steady state depends on the exponent, n, in the erosion model. For n = 1, the landscape cannot maintain continuity. For cases where n ≠ 1, continuity is maintained, and steepness is a function of erodibility that is predicted by the theory. The landscape in continuity steady state can be quite different from that predicted by topographic steady state. For n < 1 continuity predicts that channels incising subhorizontal layers will be steeper in the weaker rock layers. For subhorizontal layered rocks with different erodibilities, continuity also predicts larger slope contrasts than in topographic steady state. Therefore, the relationship between steepness and erodibility within a sequence of layered rocks is a function of contact dip. For the subhorizontal limit, the history of layers exposed at base level also influences the steepness-erodibility relationship. If uplift rate
Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA
Winther, Kristoffer S.; Gerdes, Kenn
2011-01-01
Eukaryotic PIN (PilT N-terminal) domain proteins are ribonucleases involved in quality control, metabolism and maturation of mRNA and rRNA. The majority of prokaryotic PIN-domain proteins are encoded by the abundant vapBC toxin—antitoxin loci and inhibit translation by an unknown mechanism. Here we show that enteric VapCs are site-specific endonucleases that cleave tRNAfMet in the anticodon stem-loop between nucleotides +38 and +39 in vivo and in vitro. Consistently, VapC inhibited translation in vivo and in vitro. Translation-reactions could be reactivated by the addition of VapB and extra charged tRNAfMet. Similarly, ectopic production of tRNAfMet counteracted VapC in vivo. Thus, tRNAfMet is the only cellular target of VapC. Depletion of tRNAfMet by vapC induction was bacteriostatic and stimulated ectopic translation initiation at elongator codons. Moreover, addition of chloramphenicol to cells carrying vapBC induced VapC activity. Thus, by cleavage of tRNAfMet, VapC simultaneously may regulate global cellular translation and reprogram translation initiation. PMID:21502523
Steady-state transposon mutagenesis in inbred maize.
McCarty, Donald R; Settles, Andrew Mark; Suzuki, Masaharu; Tan, Bao Cai; Latshaw, Susan; Porch, Tim; Robin, Kevin; Baier, John; Avigne, Wayne; Lai, Jinsheng; Messing, Joachim; Koch, Karen E; Hannah, L Curtis
2005-10-01
We implement a novel strategy for harnessing the power of high-copy transposons for functional analysis of the maize genome, and report behavioral features of the Mutator system in a uniform inbred background. The unique UniformMu population and database facilitate high-throughput molecular analysis of Mu-tagged mutants and gene knockouts. Key features of the population include: (i) high mutation frequencies (7% independent seed mutations) and moderation of copy number (approximately 57 total Mu elements; 1-2 MuDR copies per plant) were maintained by continuous back-crossing into a phenotypically uniform inbred background; (ii) a bz1-mum9 marker enabled selection of stable lines (loss of MuDR), inhibiting further transpositions in lines selected for molecular analysis; (iii) build-up of mutation load was prevented by screening Mu-active parents to exclude plants carrying pre-existing seed mutations. To create a database of genomic sequences flanking Mu insertions, selected mutant lines were analyzed by sequencing of MuTAIL PCR clone libraries. These sequences were annotated and clustered to facilitate bioinformatic subtraction of ancestral elements and identification of insertions unique to mutant lines. New insertions targeted low-copy, gene-rich sequences, and in silico mapping revealed a random distribution of insertions over the genome. Our results indicate that Mu populations differ markedly in the occurrence of Mu insertion hotspots and the frequency of suppressible mutations. We suggest that controlled MuDR copy number in UniformMu lines is a key determinant of these differences. The public database (http://uniformmu.org; http://endosperm.info) includes pedigree and phenotypic data for over 2000 independent seed mutants selected from a population of 31 548 F2 lines and integrated with analyses of 34 255 MuTAIL sequences.
Hong, Changki; Hwang, Jeewon; Cho, Kwang-Hyun; Shin, Insik
2015-01-01
Boolean networks have been widely used to model biological processes lacking detailed kinetic information. Despite their simplicity, Boolean network dynamics can still capture some important features of biological systems such as stable cell phenotypes represented by steady states. For small models, steady states can be determined through exhaustive enumeration of all state transitions. As the number of nodes increases, however, the state space grows exponentially thus making it difficult to find steady states. Over the last several decades, many studies have addressed how to handle such a state space explosion. Recently, increasing attention has been paid to a satisfiability solving algorithm due to its potential scalability to handle large networks. Meanwhile, there still lies a problem in the case of large models with high maximum node connectivity where the satisfiability solving algorithm is known to be computationally intractable. To address the problem, this paper presents a new partitioning-based method that breaks down a given network into smaller subnetworks. Steady states of each subnetworks are identified by independently applying the satisfiability solving algorithm. Then, they are combined to construct the steady states of the overall network. To efficiently apply the satisfiability solving algorithm to each subnetwork, it is crucial to find the best partition of the network. In this paper, we propose a method that divides each subnetwork to be smallest in size and lowest in maximum node connectivity. This minimizes the total cost of finding all steady states in entire subnetworks. The proposed algorithm is compared with others for steady states identification through a number of simulations on both published small models and randomly generated large models with differing maximum node connectivities. The simulation results show that our method can scale up to several hundreds of nodes even for Boolean networks with high maximum node connectivity. The
Hong, Changki; Hwang, Jeewon; Cho, Kwang-Hyun; Shin, Insik
2015-01-01
Boolean networks have been widely used to model biological processes lacking detailed kinetic information. Despite their simplicity, Boolean network dynamics can still capture some important features of biological systems such as stable cell phenotypes represented by steady states. For small models, steady states can be determined through exhaustive enumeration of all state transitions. As the number of nodes increases, however, the state space grows exponentially thus making it difficult to find steady states. Over the last several decades, many studies have addressed how to handle such a state space explosion. Recently, increasing attention has been paid to a satisfiability solving algorithm due to its potential scalability to handle large networks. Meanwhile, there still lies a problem in the case of large models with high maximum node connectivity where the satisfiability solving algorithm is known to be computationally intractable. To address the problem, this paper presents a new partitioning-based method that breaks down a given network into smaller subnetworks. Steady states of each subnetworks are identified by independently applying the satisfiability solving algorithm. Then, they are combined to construct the steady states of the overall network. To efficiently apply the satisfiability solving algorithm to each subnetwork, it is crucial to find the best partition of the network. In this paper, we propose a method that divides each subnetwork to be smallest in size and lowest in maximum node connectivity. This minimizes the total cost of finding all steady states in entire subnetworks. The proposed algorithm is compared with others for steady states identification through a number of simulations on both published small models and randomly generated large models with differing maximum node connectivities. The simulation results show that our method can scale up to several hundreds of nodes even for Boolean networks with high maximum node connectivity. The
2014-01-01
Background A key problem in the analysis of mathematical models of molecular networks is the determination of their steady states. The present paper addresses this problem for Boolean network models, an increasingly popular modeling paradigm for networks lacking detailed kinetic information. For small models, the problem can be solved by exhaustive enumeration of all state transitions. But for larger models this is not feasible, since the size of the phase space grows exponentially with the dimension of the network. The dimension of published models is growing to over 100, so that efficient methods for steady state determination are essential. Several methods have been proposed for large networks, some of them heuristic. While these methods represent a substantial improvement in scalability over exhaustive enumeration, the problem for large networks is still unsolved in general. Results This paper presents an algorithm that consists of two main parts. The first is a graph theoretic reduction of the wiring diagram of the network, while preserving all information about steady states. The second part formulates the determination of all steady states of a Boolean network as a problem of finding all solutions to a system of polynomial equations over the finite number system with two elements. This problem can be solved with existing computer algebra software. This algorithm compares favorably with several existing algorithms for steady state determination. One advantage is that it is not heuristic or reliant on sampling, but rather determines algorithmically and exactly all steady states of a Boolean network. The code for the algorithm, as well as the test suite of benchmark networks, is available upon request from the corresponding author. Conclusions The algorithm presented in this paper reliably determines all steady states of sparse Boolean networks with up to 1000 nodes. The algorithm is effective at analyzing virtually all published models even those of moderate
Bydlon, Torre M; Nachabé, Rami; Ramanujam, Nimmi; Sterenborg, Henricus J C M; Hendriks, Benno H W
2015-01-01
Diffuse reflectance spectroscopy is a rapidly growing technology in the biophotonics community where it has shown promise in its ability to classify different tissues. In the steady-state domain a wide spectrum of clinical applications is supported with this technology ranging from diagnostic to guided interventions. Diffuse reflectance spectra provide a wealth of information about tissue composition; however, extracting biologically relevant information from the spectra in terms of chromophores may be more useful to gain acceptance into the clinical community. The chromophores that absorb light in the visible and near infrared wavelengths can provide information about tissue composition. The key characteristics of these chromophores and their relevance in different organs and clinical applications is the focus of this review, along with translating their use to the clinic.
Astruc, Béatrice; Tarral, Antoine; Dostert, Philippe; Mariotti, Fabrizia; Fabbri, Laura; Imbimbo, Bruno P
2005-01-01
Aims To evaluate the safety, tolerability, pharmacokinetic and pharmacodynamic profiles of CHF3381, a dual NMDA and MAO-A inhibitor, after multiple oral doses in healthy subjects. Methods Forty-eight young males received CHF3381 at doses of 100 mg twice daily, 200 mg twice daily, 400 mg twice daily or placebo for 2 weeks according to a double-blind, randomized, parallel group design. Plasma and urine concentrations of the parent drug and of two major metabolites (CHF3567 and 2-aminoindane) were measured over time. MAO-A activity in plasma was estimated by measuring plasma concentrations of 3,4-dihydroxyphenylglycol. Sustained attention, memory and sedation were assessed throughout the study with standard psychometric tests. Results Most of the adverse events were mild in intensity, with dose regimens of 100 mg twice daily and 200 mg twice daily being indistinguishable from placebo. After 400 mg twice daily, the most frequent adverse events were mild dizziness, asthenia and insomnia. At steady-state, 400 mg twice daily slightly increased supine heart rate (+ 9 ± 2 beats min−1) and diastolic blood pressure (+6 ± 2 mmHg) compared with placebo. There were no dose-dependent or consistent effects of CHF3381 on attention, motor co-ordination or memory, but 400 mg twice daily significantly decreased alertness compared with placebo. Plasma concentrations of CHF3381 peaked at around 3 h and were dose-proportional. The elimination half-life of CHF3381 was estimated to be 4–6 h. At steady-state, significant CHF3381 plasma concentrations were detected at predose with a modest accumulation (1.3–1.5 times), showing that the drug given twice daily is active over the entire 24 h period. Plasma concentrations of CHF3567 and of 2-aminoindane were also proportional to the dose of CHF3381. CHF3381 dose-dependently inhibited MAO-A activity with peak effects at steady-state of 27 ± 4%, 46 ± 2% and 65 ± 5% after 100 mg twice daily, 200 mg twice daily and 400 mg twice daily
Saito, Kazuki; Horikawa, Wataru; Ito, Koichi
2015-01-01
Incidental ribosome stalling during translation elongation is an aberrant phenomenon during protein synthesis and is subjected to quality control by surveillance systems, in which mRNA and a nascent protein are rapidly degraded. Their detailed molecular mechanisms as well as responsible factors for these processes are beginning to be understood. However, the initial processes for detecting stalled translation that result in degradation remain to be determined. Among the factors identified to date, two E3 ubiquitin ligases have been reported to function in distinct manners. Because ubiquitination is one of the most versatile of cellular signals, these distinct functions of E3 ligases suggested diverse ubiquitination pathways during surveillance for stalled translation. In this study, we report experimental evidences for a unique role of non-proteasomal K63 polyubiquitination during quality control for stalled translation. Inhibiting K63 polyubiquitination by expressing a K63R ubiquitin mutation in Saccharomyces cerevisiae cells markedly abolished the quality control responses for stalled translation. More detailed analyses indicated that the effects of K63R mutants were independent of the proteasome and that K63 polyubiquitination is dependent on Hel2, one of the E3 ligases. Moreover, a K63R ubiquitin mutant barely inhibited the quality control pathway for nonstop translation, indicating distinct mechanisms for these highly related quality control pathways. Our results suggest that non-proteasomal K63 polyubiquitination is included in the initial surveillance process of stalled translation and presumably triggers protein degradation steps upon translational stall. These findings provide crucial information regarding the detailed molecular mechanisms for the initial steps involved in quality control systems and their classification. PMID:25909477
Archelas, Alain; Zhao, Wei; Faure, Bruno; Iacazio, Gilles; Kotik, Michael
2016-02-01
A detailed kinetic study based on steady-state and pre-steady-state measurements is described for the highly enantioselective epoxide hydrolase Kau2. The enzyme, which is a member of the α/β-hydrolase fold family, preferentially reacts with the (S,S)-enantiomer of trans-stilbene oxide (TSO) with an E value of ∼200. The enzyme follows a classical two-step catalytic mechanism with formation of an alkyl-enzyme intermediate in the first step and hydrolysis of this intermediate in a rate-limiting second step. Tryptophan fluorescence quenching during TSO conversion appears to correlate with alkylation of the enzyme. The steady-state data are consistent with (S,S) and (R,R)-TSO being two competing substrates with marked differences in k(cat) and K(M) values. The high enantiopreference of the epoxide hydrolase is best explained by pronounced differences in the second-order alkylation rate constant (k2/K(S)) and the alkyl-enzyme hydrolysis rate k3 between the (S,S) and (R,R)-enantiomers of TSO. Our data suggest that during conversion of (S,S)-TSO the two active site tyrosines, Tyr(157) and Tyr(259), serve mainly as electrophilic catalysts in the alkylation half-reaction, polarizing the oxirane oxygen of the bound epoxide through hydrogen bond formation, however, without fully donating their hydrogens to the forming alkyl-enzyme intermediate.
Translated chemical reaction networks.
Johnston, Matthew D
2014-05-01
Many biochemical and industrial applications involve complicated networks of simultaneously occurring chemical reactions. Under the assumption of mass action kinetics, the dynamics of these chemical reaction networks are governed by systems of polynomial ordinary differential equations. The steady states of these mass action systems have been analyzed via a variety of techniques, including stoichiometric network analysis, deficiency theory, and algebraic techniques (e.g., Gröbner bases). In this paper, we present a novel method for characterizing the steady states of mass action systems. Our method explicitly links a network's capacity to permit a particular class of steady states, called toric steady states, to topological properties of a generalized network called a translated chemical reaction network. These networks share their reaction vectors with their source network but are permitted to have different complex stoichiometries and different network topologies. We apply the results to examples drawn from the biochemical literature.
Synchronous machine steady-state stability analysis using an artificial neural network
Chen, C.R.; Hsu, Y.Y. . Dept. of Electrical Engineering)
1991-03-01
A new type of artificial neural network is proposed for the steady-state stability analysis of a synchronous generator. In the developed artificial neutral network, those system variables which play an important role in steady-state stability such as generator outputs and power system stabilizer parameters are employed as the inputs. The output of the neural net provides the information on steady-state stability. Once the connection weights of the neural network have been learned using a set of training data derived off-line, the neural net can be applied to analyze the steady-state stability of the system time. To demonstrate the effectiveness of the proposed neural net, steady-state stability analysis is performed on a synchronous generator connected to a large power system. It is found that the proposed neural net requires much less training time than the multilayer feedforward network with backpropagation-momentum learning algorithm. It is also concluded from the test results that correct stability assessment can be achieved by the neural network.
Perception of steady-state vowels and vowelless syllables by adults and children
NASA Astrophysics Data System (ADS)
Nittrouer, Susan
2005-04-01
Vowels can be produced as long, isolated, and steady-state, but that is not how they are found in natural speech. Instead natural speech consists of almost continuously changing (i.e., dynamic) acoustic forms from which mature listeners recover underlying phonetic form. Some theories suggest that children need steady-state information to recognize vowels (and so learn vowel systems), even though that information is sparse in natural speech. The current study examined whether young children can recover vowel targets from dynamic forms, or whether they need steady-state information. Vowel recognition was measured for adults and children (3, 5, and 7 years) for natural productions of /dæd/, /dUd/ /æ/, /U/ edited to make six stimulus sets: three dynamic (whole syllables; syllables with middle 50-percent replaced by cough; syllables with all but the first and last three pitch periods replaced by cough), and three steady-state (natural, isolated vowels; reiterated pitch periods from those vowels; reiterated pitch periods from the syllables). Adults scored nearly perfectly on all but first/last three pitch period stimuli. Children performed nearly perfectly only when the entire syllable was heard, and performed similarly (near 80%) for all other stimuli. Consequently, children need dynamic forms to perceive vowels; steady-state forms are not preferred.
A stability analysis of the power-law steady state of marine size spectra.
Datta, Samik; Delius, Gustav W; Law, Richard; Plank, Michael J
2011-10-01
This paper investigates the stability of the power-law steady state often observed in marine ecosystems. Three dynamical systems are considered, describing the abundance of organisms as a function of body mass and time: a "jump-growth" equation, a first order approximation which is the widely used McKendrick-von Foerster equation, and a second order approximation which is the McKendrick-von Foerster equation with a diffusion term. All of these yield a power-law steady state. We derive, for the first time, the eigenvalue spectrum for the linearised evolution operator, under certain constraints on the parameters. This provides new knowledge of the stability properties of the power-law steady state. It is shown analytically that the steady state of the McKendrick-von Foerster equation without the diffusion term is always unstable. Furthermore, numerical plots show that eigenvalue spectra of the McKendrick-von Foerster equation with diffusion give a good approximation to those of the jump-growth equation. The steady state is more likely to be stable with a low preferred predator:prey mass ratio, a large diet breadth and a high feeding efficiency. The effects of demographic stochasticity are also investigated and it is concluded that these are likely to be small in real systems.
Halász, Adám M; Lai, Hong-Jian; McCabe Pryor, Meghan; Radhakrishnan, Krishnan; Edwards, Jeremy S
2013-01-01
True steady states are a rare occurrence in living organisms, yet their knowledge is essential for quasi-steady-state approximations, multistability analysis, and other important tools in the investigation of chemical reaction networks (CRN) used to describe molecular processes on the cellular level. Here, we present an approach that can provide closed form steady-state solutions to complex systems, resulting from CRN with binary reactions and mass-action rate laws. We map the nonlinear algebraic problem of finding steady states onto a linear problem in a higher-dimensional space. We show that the linearized version of the steady-state equations obeys the linear conservation laws of the original CRN. We identify two classes of problems for which complete, minimally parameterized solutions may be obtained using only the machinery of linear systems and a judicious choice of the variables used as free parameters. We exemplify our method, providing explicit formulae, on CRN describing signal initiation of two important types of RTK receptor-ligand systems, VEGF and EGF-ErbB1.
Analytical Solution of Steady State Equations for Chemical Reaction Networks with Bilinear Rate Laws
Halász, Ádám M.; Lai, Hong-Jian; McCabe, Meghan M.; Radhakrishnan, Krishnan; Edwards, Jeremy S.
2014-01-01
True steady states are a rare occurrence in living organisms, yet their knowledge is essential for quasi-steady state approximations, multistability analysis, and other important tools in the investigation of chemical reaction networks (CRN) used to describe molecular processes on the cellular level. Here we present an approach that can provide closed form steady-state solutions to complex systems, resulting from CRN with binary reactions and mass-action rate laws. We map the nonlinear algebraic problem of finding steady states onto a linear problem in a higher dimensional space. We show that the linearized version of the steady state equations obeys the linear conservation laws of the original CRN. We identify two classes of problems for which complete, minimally parameterized solutions may be obtained using only the machinery of linear systems and a judicious choice of the variables used as free parameters. We exemplify our method, providing explicit formulae, on CRN describing signal initiation of two important types of RTK receptor-ligand systems, VEGF and EGF-ErbB1. PMID:24334389
Joseph, David; Schobelock, Michael J; Riesenberg, Robert R; Vince, Bradley D; Webster, Lynn R; Adeniji, Abidemi; Elgadi, Mabrouk; Huang, Fenglei
2015-01-01
The effects of steady-state faldaprevir on the safety, pharmacokinetics, and pharmacodynamics of steady-state methadone and buprenorphine-naloxone were assessed in 34 healthy male and female subjects receiving stable addiction management therapy. Subjects continued receiving a stable oral dose of either methadone (up to a maximum dose of 180 mg per day) or buprenorphine-naloxone (up to a maximum dose of 24 mg-6 mg per day) and also received oral faldaprevir (240 mg) once daily (QD) for 8 days following a 480-mg loading dose. Serial blood samples were taken for pharmacokinetic analysis. The pharmacodynamics of the opioid maintenance regimens were evaluated by the objective and subjective opioid withdrawal scales. Coadministration of faldaprevir with methadone or buprenorphine-naloxone resulted in geometric mean ratios for the steady-state area under the concentration-time curve from 0 to 24 h (AUC(0-24,ss)), the steady-state maximum concentration of the drug in plasma (C(max,ss)), and the steady-state concentration of the drug in plasma at 24 h (C(24,ss)) of 0.92 to 1.18 for (R)-methadone, (S)-methadone, buprenorphine, norbuprenorphine, and naloxone, with 90% confidence intervals including, or very close to including, 1.00 (no effect), suggesting a limited overall effect of faldaprevir. Although individual data showed moderate variability in the exposures between subjects and treatments, there was no evidence of symptoms of opiate overdose or withdrawal either during the coadministration of faldaprevir with methadone or buprenorphine-naloxone or after faldaprevir dosing was stopped. Similar faldaprevir exposures were observed in the methadone- and buprenorphine-naloxone-treated subjects. In conclusion, faldaprevir at 240 mg QD can be coadministered with methadone or buprenorphine-naloxone without dose adjustment, although given the relatively narrow therapeutic windows of these agents, monitoring for opiate overdose and withdrawal may still be appropriate. (This
Wang, Qian; Li, Bincheng
2015-09-28
Spatially resolved steady-state photocarrier radiometric (PCR) imaging technique is developed to characterize the electronic transport properties of silicon wafers. Based on a nonlinear PCR theory, simulations are performed to investigate the effects of electronic transport parameters (the carrier lifetime, the carrier diffusion coefficient, and the front surface recombination velocity) on the steady-state PCR intensity profiles. The electronic transport parameters of an n-type silicon wafer are simultaneously determined by fitting the measured steady-state PCR intensity profiles to the three-dimensional nonlinear PCR model. The determined transport parameters are in good agreement with the results obtained by the conventional modulated PCR technique with multiple pump beam radii.
The steady-state visual evoked potential in vision research: A review
Norcia, Anthony M.; Appelbaum, L. Gregory; Ales, Justin M.; Cottereau, Benoit R.; Rossion, Bruno
2015-01-01
Periodic visual stimulation and analysis of the resulting steady-state visual evoked potentials were first introduced over 80 years ago as a means to study visual sensation and perception. From the first single-channel recording of responses to modulated light to the present use of sophisticated digital displays composed of complex visual stimuli and high-density recording arrays, steady-state methods have been applied in a broad range of scientific and applied settings.The purpose of this article is to describe the fundamental stimulation paradigms for steady-state visual evoked potentials and to illustrate these principles through research findings across a range of applications in vision science. PMID:26024451
Mechanism of Non-Steady State Dissolution of Goethite in the Presence of Siderophores
NASA Astrophysics Data System (ADS)
Reichard, P. U.; Kretzschmar, R.; Kraemer, S. M.
2003-12-01
Iron is an essential micronutrient for almost all known organisms. Bacteria, fungi, and graminaceous plants are capable of exuding siderophores as part of an iron acquisition strategy. The production of these strong iron chelating ligands is induced by iron limited conditions. Grasses under iron stress, for example, exude phytosiderophores into the rhizosphere in a special diurnal rhythm (Roemheld and Marschner 1986). A few hours after sunrise the exudation starts, culminates around noon and is shut down again until about 4 hours after noon. The phytosiderophores diffuse into the rhizosphere (Marschner et al. 1986) and are passively back transported to the plants by advective flow induced by high transpiration around noon. Despite a fairly short residence time of the phytosiderophores in the rhizosphere, it is a very effective strategy for iron acquisition. To investigate the effect of such pulse inputs of siderophores on iron acquisition, we studied the dissolution mechanism of goethite (alpha-FeOOH), a mineral phase common in soils, under non-steady state conditions. In consideration of the chemical complexity of the rhizosphere, we also investigated the effect of other organic ligands commonly found in the rhizosphere (e. g. oxalate) on the dissolution kinetics. The dissolution experiments were conducted in batch reactors with a constant goethite solids concentration of 2.5 g/l, an ionic strength of 0.01 M, a pH of 6 and 100 microM oxalate. To induce non-steady state conditions, 3 mM phytosiderophores were added to a batch after the goethite-oxalate suspension reacted for a certain time period. Before the siderophore was added to the goethite-oxalate suspension, no dissolution of iron was observed. But, with the addition of the siderophore, a high rate was observed for the iron mobilization under these non-steady state conditions that subsequently was followed by a slow steady state dissolution rate. The results of these non-steady state experiments are very
NASA Astrophysics Data System (ADS)
Jazaei, Farhad; Simpson, Matthew J.; Clement, T. Prabhakar
2017-01-01
The diffusion equation is one of the most commonly used models for describing environmental problems involving heat, solute, and water transport. A diffusive system can be either transient or steady state. When a system is transient, the dependent variable (e.g., temperature, concentration, or hydraulic head) varies with time; whereas at steady state, the temporal variations are negligible. Here we consider an intermediate state, called steady shape, corresponding to the situation where temporal variations in diffusive fluxes are negligible but the dependent variable may remain transient. We present a general theoretical framework for identifying steady shape conditions and propose a novel method for evaluating the time scale needed for a diffusive system to approach both steady shape and steady state conditions.
Exact steady state manifold of a boundary driven spin-1 Lai-Sutherland chain
NASA Astrophysics Data System (ADS)
Ilievski, Enej; Prosen, Tomaž
2014-05-01
We present an explicit construction of a family of steady state density matrices for an open integrable spin-1 chain with bilinear and biquadratic interactions, also known as the Lai-Sutherland model, driven far from equilibrium by means of two oppositely polarizing Markovian dissipation channels localized at the boundary. The steady state solution exhibits n+1 fold degeneracy, for a chain of length n, due to existence of (strong) Liouvillian U(1) symmetry. The latter can be exploited to introduce a chemical potential and define a grand canonical nonequilibrium steady state ensemble. The matrix product form of the solution entails an infinitely-dimensional representation of a non-trivial Lie algebra (semidirect product of sl2 and a non-nilpotent radical) and hints to a novel Yang-Baxter integrability structure.
Sickle cell disease painful crisis and steady state differentiation by proton magnetic resonance.
Fernández, Adolfo A; Cabal, Carlos A; Lores, Manuel A; Losada, Jorge; Pérez, Enrique R
2009-01-01
The delay time of the Hb S polymerization process was investigated in 63 patients with sickle cell disease during steady state and 10 during painful crisis starting from spin-spin proton magnetic resonance (PMR) time behavior measured at 36 degrees C and during spontaneous deoxygenation. We found a significant decrease of delay time as a result of the crisis (36 +/- 10%) and two well-differentiated ranges of values for each state: 273-354 min for steady state and 166-229 min for crisis with an uncertainty region of 15%. It is possible to use PMR as an objective and quantitative method in order to differentiate both clinical conditions of the sickle cell patient, but a more clear differentiation can be established comparing the delay time (td) value of one patient during crisis with his own td value during steady state.
Kitazumi, Yuki; Hamamoto, Katsumi; Noda, Tatsuo; Shirai, Osamu; Kano, Kenji
2015-01-01
The fabrication of ultrathin-ring electrodes with a diameter of 2 mm and a thickness of 100 nm is established. The ultrathin-ring electrodes provide a large density of pseudo-steady-state currents, and realize pseudo-steady-state amperometry under quiescent conditions without a Faraday cage. Under the limiting current conditions, the current response at the ultrathin-ring electrode can be well explained by the theory of the microband electrode response. Cyclic voltammograms at the ultrathin-ring electrode show sigmoidal characteristics with some hysteresis. Numerical simulation reveals that the hysteresis can be ascribed to the time-dependence of pseudo-steady-state current. The performance of amperometry with the ultrathin-ring electrode has been verified in its application to redox enzyme kinetic measurements.
Steady-state solutions of a diffusive energy-balance climate model and their stability
NASA Technical Reports Server (NTRS)
Ghil, M.
1975-01-01
A diffusive energy-balance climate model, governed by a nonlinear parabolic partial differential equation, was studied. Three positive steady-state solutions of this equation are found; they correspond to three possible climates of our planet: an interglacial (nearly identical to the present climate), a glacial, and a completely ice-covered earth. Models similar to the main one are considered, and the number of their steady states was determined. All the models have albedo continuously varying with latitude and temperature, and entirely diffusive horizontal heat transfer. The stability under small perturbations of the main model's climates was investigated. A stability criterion is derived, and its application shows that the present climate and the deep freeze are stable, whereas the model's glacial is unstable. The dependence was examined of the number of steady states and of their stability on the average solar radiation.
Current Control in ITER Steady State Plasmas With Neutral Beam Steering
R.V. Budny
2009-09-10
Predictions of quasi steady state DT plasmas in ITER are generated using the PTRANSP code. The plasma temperatures, densities, boundary shape, and total current (9 - 10 MA) anticipated for ITER steady state plasmas are specified. Current drive by negative ion neutral beam injection, lower-hybrid, and electron cyclotron resonance are calculated. Four modes of operation with different combinations of current drive are studied. For each mode, scans with the NNBI aimed at differing heights in the plasma are performed to study effects of current control on the q profile. The timeevolution of the currents and q are calculated to evaluate long duration transients. Quasi steady state, strongly reversed q profiles are predicted for some beam injection angles if the current drive and bootstrap currents are sufficiently large.
Exact Nonequilibrium Steady State of a Strongly Driven Open XXZ Chain
NASA Astrophysics Data System (ADS)
Prosen, Tomaž
2011-09-01
An exact and explicit ladder-tensor-network ansatz is presented for the nonequilibrium steady state of an anisotropic Heisenberg XXZ spin-1/2 chain which is driven far from equilibrium with a pair of Lindblad operators acting on the edges of the chain only. We show that the steady-state density operator of a finite system of size n is—apart from a normalization constant—a polynomial of degree 2n-2 in the coupling constant. Efficient computation of physical observables is facilitated in terms of a transfer operator reminiscent of a classical Markov process. In the isotropic case we find cosine spin profiles, 1/n2 scaling of the spin current, and long-range correlations in the steady state. This is a fully nonperturbative extension of a recent result [Phys. Rev. Lett. 106, 217206 (2011)PRLTAO0031-900710.1103/PhysRevLett.106.217206].
Inhibition of tumor cell growth by Sigma1 ligand mediated translational repression
Kim, Felix J.; Schrock, Joel M.; Spino, Christina M.; Marino, Jacqueline C.; Pasternak, Gavril W.
2012-09-21
Highlights: Black-Right-Pointing-Pointer Sigma1 ligand treatment mediates decrease in tumor cell mass. Black-Right-Pointing-Pointer Identification of a Sigma1 ligand with reversible translational repressor actions. Black-Right-Pointing-Pointer Demonstration of a role for Sigma1 in cellular protein synthesis. -- Abstract: Treatment with sigma1 receptor (Sigma1) ligands can inhibit cell proliferation in vitro and tumor growth in vivo. However, the cellular pathways engaged in response to Sigma1 ligand treatment that contribute to these outcomes remain largely undefined. Here, we show that treatment with putative antagonists of Sigma1 decreases cell mass. This effect corresponds with repressed cap-dependent translation initiation in multiple breast and prostate cancer cell lines. Sigma1 antagonist treatment suppresses phosphorylation of translational regulator proteins p70S6K, S6, and 4E-BP1. RNAi-mediated knockdown of Sigma1 also results in translational repression, consistent with the effects of antagonist treatment. Sigma1 antagonist mediated translational repression and decreased cell size are both reversible. Together, these data reveal a role for Sigma1 in tumor cell protein synthesis, and demonstrate that small molecule Sigma1 ligands can be used as modulators of protein translation.
Inhibition of eukaryotic translation elongation by the antitumor natural product Mycalamide B
Dang, Yongjun; Schneider-Poetsch, Tilman; Eyler, Daniel E.; Jewett, John C.; Bhat, Shridhar; Rawal, Viresh H.; Green, Rachel; Liu, Jun O.
2011-01-01
Mycalamide B (MycB) is a marine sponge-derived natural product with potent antitumor activity. Although it has been shown to inhibit protein synthesis, the molecular mechanism of action by MycB remains incompletely understood. We verified the inhibition of translation elongation by in vitro HCV IRES dual luciferase assays, ribosome assembly, and in vivo [35S]methinione labeling experiments. Similar to cycloheximide (CHX), MycB inhibits translation elongation through blockade of eEF2-mediated translocation without affecting the eEF1A-mediated loading of tRNA onto the ribosome, AUG recognition, or dipeptide synthesis. Using chemical footprinting, we identified the MycB binding site proximal to the C3993 28S rRNA residue on the large ribosomal subunit. However, there are also subtle, but significant differences in the detailed mechanisms of action of MycB and CHX. First, MycB arrests the ribosome on the mRNA one codon ahead of CHX. Second, MycB specifically blocked tRNA binding to the E-site of the large ribosomal subunit. Moreover, they display different polysome profiles in vivo. Together, these observations shed new light on the mechanism of inhibition of translation elongation by MycB. PMID:21693620
Foster, Carl; Farland, Courtney V.; Guidotti, Flavia; Harbin, Michelle; Roberts, Brianna; Schuette, Jeff; Tuuri, Andrew; Doberstein, Scott T.; Porcari, John P.
2015-01-01
High intensity interval training (HIIT) has become an increasingly popular form of exercise due to its potentially large effects on exercise capacity and small time requirement. This study compared the effects of two HIIT protocols vs steady-state training on aerobic and anaerobic capacity following 8-weeks of training. Fifty-five untrained college-aged subjects were randomly assigned to three training groups (3x weekly). Steady-state (n = 19) exercised (cycle ergometer) 20 minutes at 90% of ventilatory threshold (VT). Tabata (n = 21) completed eight intervals of 20s at 170% VO2max/10s rest. Meyer (n = 15) completed 13 sets of 30s (20 min) @ 100% PVO2 max/ 60s recovery, average PO = 90% VT. Each subject did 24 training sessions during 8 weeks. Results: There were significant (p < 0.05) increases in VO2max (+19, +18 and +18%) and PPO (+17, +24 and +14%) for each training group, as well as significant increases in peak (+8, + 9 and +5%) & mean (+4, +7 and +6%) power during Wingate testing, but no significant differences between groups. Measures of the enjoyment of the training program indicated that the Tabata protocol was significantly less enjoyable (p < 0.05) than the steady state and Meyer protocols, and that the enjoyment of all protocols declined (p < 0.05) across the duration of the study. The results suggest that although HIIT protocols are time efficient, they are not superior to conventional exercise training in sedentary young adults. Key points Steady state training equivalent to HIIT in untrained students Mild interval training presents very similar physiologic challenge compared to steady state training HIIT (particularly very high intensity variants were less enjoyable than steady state or mild interval training Enjoyment of training decreases across the course of an 8 week experimental training program PMID:26664271
Mass transport in salt repositories: Steady-state transport through interbeds
Hwang, Y.; Lee, W.W.-L.; Chambre, P.L.; Pigford, T.H. . Dept. of Nuclear Engineering)
1989-03-01
Salt has long been a candidate for geologic disposal of nuclear waste. Because salt is extremely soluble in water, the existence of rock salt in the ground atest to the long-term stability of the salt. Both bedded salt and salt domes have been considered for nuclear waste disposal in the United States and Europe. While the salt is known to be quite pure in salt domes, bedded salt is interlaced with beds of sediments. Traditionally rock salt has not been considered water-conducting, but sediments layers would be classical porous media, capable of conducting water. Therefore there is interest in determining whether interbeds in bedded salt constitute pathway for radionuclide migration. In this report we consider steady-state migration of radionuclides from a single waste cylinder into a single interbed. Two approaches are used. In 1982 Neretnieks proposed an approach for calculating the steady-state transport of oxidants to a copper container. We have adapted that approach for calculating steady-state radionuclide migration away from the waste package, as a first approximation. We have also analyzed the problem of time-dependent radionuclide diffusion from a container through a backfill layer into a fracture, and we used the steady-state solution from that problem for comparison. Section 2 gives a brief summary of the geology of interbeds in bedded salt. Section 3 presents the mass transfer resistances approach of Neretnieks, summarizing the formulation and giving numerical illustrations of the steady-state two-dimensional diffusion analysis. Section 4 gives a brief statement of the steady-state result from a related analysis. Conclusions are stated in Section 5. 13 refs., 5 figs., 2 tabs.
Is the effect of tinnitus on auditory steady-state response amplitude mediated by attention?
Diesch, Eugen; Andermann, Martin; Rupp, Andre
2012-01-01
Objectives: Auditory steady-state response (ASSR) amplitude enhancement effects have been reported in tinnitus patients. As ASSR amplitude is also enhanced by attention, the effect of tinnitus on ASSR amplitude could be interpreted as an effect of attention mediated by tinnitus. As N1 attention effects are significantly larger than those on the ASSR, if the effect of tinnitus on ASSR amplitude were due to attention, there should be similar amplitude enhancement effects in tinnitus for the N1 component of the auditory-evoked response. Methods: MEG recordings which were previously examined for the ASSR (Diesch et al., 2010a) were analyzed with respect to the N1m component. Like the ASSR previously, the N1m was analyzed in the source domain (source space projection). Stimuli were amplitude-modulated (AM) tones with one of three carrier frequencies matching the tinnitus frequency or a surrogate frequency 1½ octave above the audiometric edge frequency in controls, the audiometric edge frequency, and a frequency below the audiometric edge. Single AM-tones were presented in a single condition and superpositions of three AM-tones differing in carrier and modulation frequency in a composite condition. Results: In the earlier ASSR study (Diesch et al., 2010a), the ASSR amplitude in tinnitus patients, but not in controls, was significantly larger in the (surrogate) tinnitus condition than in the edge condition. Patients showed less evidence than controls of reciprocal inhibition of component ASSR responses in the composite condition. In the present study, N1m amplitudes elicited by stimuli located at the audiometric edge and at the (surrogate) tinnitus frequency were smaller than N1m amplitudes elicited by sub-edge tones both in patients and controls. The relationship of the N1m response in the composite condition to the N1m response in the single condition indicated that reciprocal inhibition among component N1m responses was reduced in patients compared against controls
SUPERENERGY-2: a multiassembly, steady-state computer code for LMFBR core thermal-hydraulic analysis
Basehore, K.L.; Todreas, N.E.
1980-08-01
Core thermal-hydraulic design and performance analyses for Liquid Metal Fast Breeder Reactors (LMFBRs) require repeated detailed multiassembly calculations to determine radial temperature profiles and subchannel outlet temperatures for various core configurations and subassembly structural analyses. At steady-state, detailed core-wide temperature profiles are required for core restraint calculations and subassembly structural analysis. In addition, sodium outlet temperatures are routinely needed for each reactor operating cycle. The SUPERENERGY-2 thermal-hydraulic code was designed specifically to meet these designer needs. It is applicable only to steady-state, forced-convection flow in LMFBR core geometries.
S3C: EBT Steady-State Shooting code description and user's guide
Downum, W.B.
1983-09-01
The Oak Ridge National Laboratory (ORNL) one-dimensional (1-D) Steady-State Shooting code (S3C) for ELMO Bumpy Torus (EBT) plasmas is described. Benchmark calculations finding the steady-state density and electron and ion temperature profiles for a known neutral density profile and known external energy sources are carried out. Good agreement is obtained with results from the ORNL Radially Resolved Time Dependent 1-D Transport code for an EBT-Q type reactor. The program logic is described, along with the physics models in each code block and the variable names used. Sample input and output files are listed, along with the main code.
A quaternionic map for the steady states of the Heisenberg spin-chain
NASA Astrophysics Data System (ADS)
Mehta, Mitaxi P.; Dutta, Souvik; Tiwari, Shubhanshu
2014-01-01
We show that the steady states of the classical Heisenberg XXX spin-chain in an external magnetic field can be found by iterations of a quaternionic map. A restricted model, e.g., the xy spin-chain is known to have spatially chaotic steady states and the phase space occupied by these chaotic states is known to go through discrete changes as the field strength is varied. The same phenomenon is studied for the xxx spin-chain. It is seen that in this model the phase space volume varies smoothly with the external field.
Mass-Radius Spirals for Steady State Families of the Vlasov-Poisson System
NASA Astrophysics Data System (ADS)
Ramming, Tobias; Rein, Gerhard
2017-02-01
We consider spherically symmetric steady states of the Vlasov-Poisson system, which describe equilibrium configurations of galaxies or globular clusters. If the microscopic equation of state, i.e., the dependence of the steady state on the particle energy (and angular momentum) is fixed, a one-parameter family of such states is obtained. In the polytropic case the mass of the state along such a one-parameter family is a monotone function of its radius. We prove that for the King, Woolley-Dickens, and related models this mass-radius relation takes the form of a spiral.
Steady-state creep of complexly reinforced shallow metal-composite shells
NASA Astrophysics Data System (ADS)
Yankovskii, A. P.
2010-05-01
The problem of deformation of shallow shells of variable thickness reinforced with fibers of constant cross section, whose all phases operate under the conditions of steady-state creep, is formulated. The system of resolving equations and the corresponding boundary conditions are analyzed, and the procedure for solving this problem is developed. A way of approximate solution of such problems in the case of transient creep is indicated. The particular calculations performed show that the compliance of thin-walled structures, under the conditions of steady-state creep, greatly depends on the structure of reinforcement.
Three-state, steady-state Ising systems: Monte Carlo and Bragg-Williams treatments
Hill, Terrell L.; Chen, Yi-Der
1981-01-01
In two earlier papers, the steady-state critical and phase-transition properties of a lattice of three-state enzyme molecules were studied by using the “closed” Bragg-Williams (BW), or mean field, approximation. The “open” BW and Monte Carlo methods are applied to the same problem in this paper by using finite lattices. The open BW treatment provides a way of locating the cut across a van der Waals type of loop encountered in a phase transition in the closed BW system. Thermodynamic-like methods cannot be used for this purpose as they can with two-state, steady-state systems. PMID:16592956
Non-equilibrium steady states: fluctuations and large deviations of the density and of the current
NASA Astrophysics Data System (ADS)
Derrida, Bernard
2007-07-01
These lecture notes give a short review of methods such as the matrix ansatz, the additivity principle or the macroscopic fluctuation theory, developed recently in the theory of non-equilibrium phenomena. They show how these methods allow us to calculate the fluctuations and large deviations of the density and the current in non-equilibrium steady states of systems like exclusion processes. The properties of these fluctuations and large deviation functions in non-equilibrium steady states (for example, non-Gaussian fluctuations of density or non-convexity of the large deviation function which generalizes the notion of free energy) are compared with those of systems at equilibrium.
Ng, P K
1980-07-01
This paper describes the use of a programmable calculator (HP-97) to determine the individualized Michaelis-Menten parameters of phenytoin by utilising the linear regression technique in fitting data of multiple doses and corresponding steady-state concentrations to a linear-transformed Michaelis-Menten equation and solving for the Michaelis-Menten parameters. In addition, the calculator program can predict the corresponding steady-state concentration of phenytoin for any given dose used in an individual by employing the derived Michaelis-Menten parameters and the Michaelis-Menten equation.
Spectral characteristics of steady-state Lévy flights in confinement potential profiles
NASA Astrophysics Data System (ADS)
Kharcheva, A. A.; Dubkov, A. A.; Dybiec, B.; Spagnolo, B.; Valenti, D.
2016-05-01
The steady-state correlation characteristics of superdiffusion in the form of Lévy flights in one-dimensional confinement potential profiles are investigated both theoretically and numerically. Specifically, for Cauchy stable noise we calculate the steady-state probability density function for an infinitely deep rectangular potential well and for a symmetric steep potential well of the type U(x)\\propto {{x}2m} . For these potential profiles and arbitrary Lévy index α, we obtain the asymptotic expression of the spectral power density.
Transient and steady-state velocity of domain walls for a complete range of drive fields
NASA Technical Reports Server (NTRS)
Bourne, H. C., Jr.; Bartran, D. S.
1974-01-01
Approximate analytic solutions for transient and steady-state 180 deg domain wall motion in bulk magnetic material are obtained from the dynamic torque equations with a Gilbert damping term. The results for the Walker region in which the transient solution approaches the familiar Walker steady-state solution are presented in a slightly new form for completeness. An analytic solution corresponding to larger drive fields predicts an oscillatory motion with an average value which decreases with drive field for reasonable values of the damping parameter. These results agree with those obtained by a computer solution of the torque equation and those obtained with the assumption of a very large anisotropy field.
Characterization of polyester films used in capacitors. 1: Transient and steady-state conductivity
NASA Astrophysics Data System (ADS)
Thielen, A.; Niezette, J.; Feyder, G.; Vanderschueren, J.
1994-10-01
Charging and discharging currents flowing through polyethylene terephthalate (PET) ultrathin films (1.5 - 12 micrometers) were measured by the use of a two-electrode configuration involving opposite lateral contacts. A study of the influence of electrification time, applied electric field, film thickness, nature of electrodes, and water content was carried out on both transient and steady-state conduction. The transient behavior can be interpreted in terms of dipolar orientation and relaxation processes while steady-state conductivity can be mainly accounted for in terms of Schottky emission. A comparison between PET and polyethylene naphthalate films is also reported.
Hinks, Jamie; Edwards, Stephen; Sallis, Paul J; Caldwell, Gary S
2013-09-01
Methane production by anaerobic digestion (AD) of macroalgae (seaweed) is a promising algal bioenergy option. Work presented here is primarily based on the AD of Laminaria hyperborea using batch and continuously stirred tank reactors. Extrapolation of data from batch studies to long term continuous reactors was unreliable. A conservative organic loading rate (OLR) of 1 g L(-1) d(-1) was used due to difficulties experienced in achieving steady state performance at an OLR of 1.5 g L(-1) d(-1). Biogas composition and methane yields (60-70%) were near to values expected from terrestrial feedstocks. Biomass washout, as imposed by the dilution rate (i.e., hydraulic residence), had considerable bearing on the biogas generation profile, particularly at >3 hydraulic residences. Inhibition of methanogen growth was linked to nutrient deficiency and potentially antimicrobial compounds associated with the feedstock. Anaerobic digestion of L. hyperborea proved feasible over extended operational periods.
Devauges, Viviane; Matthews, Daniel R.; Aluko, Justin; Nedbal, Jakub; Levitt, James A.; Poland, Simon P.; Coban, Oana; Weitsman, Gregory; Monypenny, James; Ng, Tony; Ameer-Beg, Simon M.
2014-01-01
We present a novel imaging system combining total internal reflection fluorescence (TIRF) microscopy with measurement of steady-state acceptor fluorescence anisotropy in order to perform live cell Förster Resonance Energy Transfer (FRET) imaging at the plasma membrane. We compare directly the imaging performance of fluorescence anisotropy resolved TIRF with epifluorescence illumination. The use of high numerical aperture objective for TIRF required correction for induced depolarization factors. This arrangement enabled visualisation of conformational changes of a Raichu-Cdc42 FRET biosensor by measurement of intramolecular FRET between eGFP and mRFP1. Higher activity of the probe was found at the cell plasma membrane compared to intracellularly. Imaging fluorescence anisotropy in TIRF allowed clear differentiation of the Raichu-Cdc42 biosensor from negative control mutants. Finally, inhibition of Cdc42 was imaged dynamically in live cells, where we show temporal changes of the activity of the Raichu-Cdc42 biosensor. PMID:25360776
Childers, Delma S.; Mundodi, Vasanthakrishna; Banerjee, Mohua; Kadosh, David
2014-01-01
SUMMARY While virulence properties of Candida albicans, the most commonly isolated human fungal pathogen, are controlled by transcriptional and post-translational mechanisms, considerably little is known about the role of post-transcriptional, and particularly translational, mechanisms. We demonstrate that UME6, a key filament-specific transcriptional regulator whose expression level is sufficient to determine C. albicans morphology and promote virulence, has one of the longest 5′ untranslated regions (UTRs) identified in fungi to date, which is predicted to form a complex and extremely stable secondary structure. The 5′ UTR inhibits the ability of UME6, when expressed at constitutive high levels, to drive complete hyphal growth, but does not cause a reduction in UME6 transcript. Deletion of the 5′ UTR increases C. albicans filamentation under a variety of conditions but does not affect UME6 transcript level or induction kinetics. We show that the 5′ UTR functions to inhibit Ume6 protein expression under several filament-inducing conditions and specifically reduces association of the UME6 transcript with polysomes. Overall, our findings suggest that translational efficiency mechanisms, known to regulate diverse biological processes in bacterial and viral pathogens as well as higher eukaryotes, have evolved to inhibit and fine-tune morphogenesis, a key virulence trait of many human fungal pathogens. PMID:24601998
Translation control during prolonged mTORC1 inhibition mediated by 4E-BP3
Tsukumo, Yoshinori; Alain, Tommy; Fonseca, Bruno D.; Nadon, Robert; Sonenberg, Nahum
2016-01-01
Targeting mTORC1 is a highly promising strategy in cancer therapy. Suppression of mTORC1 activity leads to rapid dephosphorylation of eIF4E-binding proteins (4E-BP1–3) and subsequent inhibition of mRNA translation. However, how the different 4E-BPs affect translation during prolonged use of mTOR inhibitors is not known. Here we show that the expression of 4E-BP3, but not that of 4E-BP1 or 4E-BP2, is transcriptionally induced during prolonged mTORC1 inhibition in vitro and in vivo. Mechanistically, our data reveal that 4E-BP3 expression is controlled by the transcription factor TFE3 through a cis-regulatory element in the EIF4EBP3 gene promoter. CRISPR/Cas9-mediated EIF4EBP3 gene disruption in human cancer cells mitigated the inhibition of translation and proliferation caused by prolonged treatment with mTOR inhibitors. Our findings show that 4E-BP3 is an important effector of mTORC1 and a robust predictive biomarker of therapeutic response to prolonged treatment with mTOR-targeting drugs in cancer. PMID:27319316
HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation.
Mercenne, Gaëlle; Bernacchi, Serena; Richer, Delphine; Bec, Guillaume; Henriet, Simon; Paillart, Jean-Christophe; Marquet, Roland
2010-01-01
The HIV-1 viral infectivity factor (Vif) allows productive infection of non-permissive cells (including most natural HIV-1 targets) by counteracting the cellular cytosine deaminases APOBEC-3G (hA3G) and hA3F. The Vif-induced degradation of these restriction factors by the proteasome has been extensively studied, but little is known about the translational repression of hA3G and hA3F by Vif, which has also been proposed to participate in Vif function. Here, we studied Vif binding to hA3G mRNA and its role in translational repression. Filter binding assays and fluorescence titration curves revealed that Vif tightly binds to hA3G mRNA. Vif overall binding affinity was higher for the 3'UTR than for the 5'UTR, even though this region contained at least one high affinity Vif binding site (apparent K(d) = 27 +/- 6 nM). Several Vif binding sites were identified in 5' and 3'UTRs using RNase footprinting. In vitro translation evidenced that Vif inhibited hA3G translation by two mechanisms: a main time-independent process requiring the 5'UTR and an additional time-dependent, UTR-independent process. Results using a Vif protein mutated in the multimerization domain suggested that the molecular mechanism of translational control is more complicated than a simple physical blockage of scanning ribosomes.
HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation
Mercenne, Gaëlle; Bernacchi, Serena; Richer, Delphine; Bec, Guillaume; Henriet, Simon; Paillart, Jean-Christophe; Marquet, Roland
2010-01-01
The HIV-1 viral infectivity factor (Vif) allows productive infection of non-permissive cells (including most natural HIV-1 targets) by counteracting the cellular cytosine deaminases APOBEC-3G (hA3G) and hA3F. The Vif-induced degradation of these restriction factors by the proteasome has been extensively studied, but little is known about the translational repression of hA3G and hA3F by Vif, which has also been proposed to participate in Vif function. Here, we studied Vif binding to hA3G mRNA and its role in translational repression. Filter binding assays and fluorescence titration curves revealed that Vif tightly binds to hA3G mRNA. Vif overall binding affinity was higher for the 3′UTR than for the 5′UTR, even though this region contained at least one high affinity Vif binding site (apparent Kd = 27 ± 6 nM). Several Vif binding sites were identified in 5′ and 3′UTRs using RNase footprinting. In vitro translation evidenced that Vif inhibited hA3G translation by two mechanisms: a main time-independent process requiring the 5′UTR and an additional time-dependent, UTR-independent process. Results using a Vif protein mutated in the multimerization domain suggested that the molecular mechanism of translational control is more complicated than a simple physical blockage of scanning ribosomes. PMID:19910370
Maitra, Dhiman; Shaeib, Faten; Abdulhamid, Ibrahim; Abdulridha, Rasha M.; Saed, Ghassan M.; Diamond, Michael P.; Pennathur, Subramaniam; Abu-Soud, Husam M.
2013-01-01
Myeloperoxidase (MPO) is a heme-containing enzyme that generates hypochlorous acid (HOCl) from chloride (Cl−) and hydrogen peroxide (H2O2). It is implicated in the pathology of several chronic inflammatory conditions such as cardiovascular and pulmonary diseases and cancer. Recently we have shown that HOCl can destroy the heme prosthetic group of hemoproteins. Here, we investigated whether the HOCl formed during steady-state catalysis is able to destroy the MPO heme moiety and thereby function as a major source of free iron. UV–visible spectra and H2O2-specific electrode measurements recorded during steady-state HOCl synthesis by MPO showed that the degree of MPO heme destruction increased after multiple additions of H2O2 (10 μM), precluding the enzyme from functioning at maximum activity (80–90% inhibition). MPO heme destruction occurred only in the presence of Cl−. Stopped-flow measurements revealed that the HOCl-mediated MPO heme destruction was complex and occurred through transient ferric species whose formation and decay kinetics indicated it participates in heme destruction along with subsequent free iron release. MPO heme depletion was confirmed by the buildup of free iron utilizing the ferrozine assay. Hypochlorous acid, once generated, first equilibrates in the solution as a whole before binding to the heme iron and initiating heme destruction. Eliminating HOCl from the MPO milieu by scavenging HOCl, destabilizing the MPO–Compound I–Cl complex that could be formed during catalysis, and/or inhibiting MPO catalytic activity partially or completely protects MPO from HOCl insults. Collectively, this study elucidates the bidirectional relationship between MPO and HOCl, which highlights the potential role of MPO as a source of free iron. PMID:23624305
Transient and steady state photoelectronic analysis in TlInSe{sub 2} crystals
Qasrawi, A.F.; Gasanly, N.M.
2011-08-15
Highlights: {yields} The steady state and time dependent photoconductivity kinetics of the TlInSe{sub 2} crystals are investigated in the temperature region of 100-350 K. {yields} The photocurrent of the sample exhibited linear, sublinear, and supralinear recombination mechanisms, at, above and below 160 K, respectively. {yields} Steady state photoconductivity revealed two recombination centres located at 234 and 94 meV. {yields} The transient photoconductivity is limited by a trapping center located at 173 meV. {yields} The capture coefficient of the trap for holes was determined as 3.11 x 10{sup -22} cm{sup -2}. -- Abstract: The temperature and illumination effects on the transient and steady state photoconductivities of TlInSe{sub 2} crystals have been studied. Namely, two recombination centres located at 234 and at 94 meV and one trap center located at 173 meV were determined from the temperature-dependent steady state and transient photoconductivities, respectively. The illumination dependence of photoconductivity indicated the domination of sublinear and supralinear recombination mechanisms above and below 160 K, respectively. The change in the recombination mechanism is attributed to the exchange of roles between the linear recombination at the surface and trapping centres in the crystal, which become dominant as temperature decreases. The transient photoconductivity measurement allowed the determination of the capture coefficient of traps for holes as 3.11 x 10{sup -22} cm{sup -2}.
Quantifying biases in non-steady state chamber measurements of soil-atmosphere gas exchange
Technology Transfer Automated Retrieval System (TEKTRAN)
Limitations of non-steady state (NSS) chamber methods for determining soil-to-atmosphere trace gas exchange rates have been recognized for several decades. Of these limitations, the so-called “chamber effect” is one of the most challenging to overcome. The chamber effect can be defined as the inhere...
40 CFR 86.1362-2010 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2013 CFR
2013-07-01
... Torque(percent) 2 3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition..., command a linear progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at the commanded engine...
40 CFR 86.1362 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2014 CFR
2014-07-01
... Torque(percent) 2 3 1a Steady-state 170 Warm Idle 0. 1b Transition 20 Linear Transition Linear Transition... transition phase, command a linear progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at...
40 CFR 86.1362-2007 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2013 CFR
2013-07-01
... Torque(percent) 2,3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition... progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at the commanded engine speed. (c) During...
40 CFR 86.1362-2007 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2012 CFR
2012-07-01
... Torque(percent) 2,3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition... progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at the commanded engine speed. (c) During...
40 CFR 86.1362-2010 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2011 CFR
2011-07-01
... Torque(percent) 2 3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition..., command a linear progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at the commanded engine...
40 CFR 86.1362-2007 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2011 CFR
2011-07-01
... Torque(percent) 2,3 1a Steady-state 170 Warm Idle 0 1b Transition 20 Linear Transition Linear Transition... progression from the speed or torque setting of the current mode to the speed or torque setting of the next mode. 3 The percent torque is relative to maximum torque at the commanded engine speed. (c) During...
Steady-State Fluorescence Anisotropy to Investigate Flavonoids Binding to Proteins
ERIC Educational Resources Information Center
Ingersoll, Christine M.; Strollo, Christen M.
2007-01-01
The steady-state fluorescence anisotropy is employed to study the binding of protein of a model protein, human serum albumin, to a commonly used flavonoid, quercetin. The experiment describes the thermodynamics, as well as the biochemical interactions of such binding effectively.
NASA Technical Reports Server (NTRS)
Giebler, K. N.
1966-01-01
Computer program evaluates heat transfer modes and calculates either the transient or steady-state temperature distributions throughout an object of complex shape when heat sources are applied to specified points on the object. It uses an electrothermal model to simulate the conductance, heat capacity, and temperature potential of the object.
User's instructions for the 41-node thermoregulatory model (steady state version)
NASA Technical Reports Server (NTRS)
Leonard, J. I.
1974-01-01
A user's guide for the steady-state thermoregulatory model is presented. The model was modified to provide conversational interaction on a remote terminal, greater flexibility for parameter estimation, increased efficiency of convergence, greater choice of output variable and more realistic equations for respiratory and skin diffusion water losses.
Impurity shielding criteria for steady state hydrogen plasmas in the LHD, a heliotron-type device
NASA Astrophysics Data System (ADS)
Nakamura, Y.; Kobayashi, M.; Yoshimura, S.; Tamura, N.; Yoshinuma, M.; Tanaka, K.; Suzuki, C.; Peterson, B. J.; Sakamoto, R.; Morisaki, T.; the LHD Experiment Group
2014-07-01
Impurity behavior has so far been investigated in steady state hydrogen plasmas in the Large Helical Device, which is a heliotron-type device and excellent for steady state operation. There was always found to be an impurity accumulation window, as observed before (Nakamura et al 2002 Plasma Phys. Control. Fusion 44 2121, Nakamura et al 2003 Nucl. Fusion 43 219). To clarify the boundary conditions, the dependences of impurity transport on edge plasma parameters are investigated with a database of steady state hydrogen discharges, and the boundary conditions for the impurity accumulation window are discussed. It is found that two different types of impurity screening effects are essential for preventing intrinsic impurities from entering the core plasma. One of them is due to positive radial electric field at the plasma edge on the low collisionality side and the other is impurity retention caused by friction force in the ergodic layer on the high collisionality side. The classification of steady state discharges on n-T space shows that the impurity behavior can be predicted by the impurity shielding criteria based on each empirical scaling.
Efficient Decoding With Steady-State Kalman Filter in Neural Interface Systems
Malik, Wasim Q.; Truccolo, Wilson; Brown, Emery N.; Hochberg, Leigh R.
2011-01-01
The Kalman filter is commonly used in neural interface systems to decode neural activity and estimate the desired movement kinematics. We analyze a low-complexity Kalman filter implementation in which the filter gain is approximated by its steady-state form, computed offline before real-time decoding commences. We evaluate its performance using human motor cortical spike train data obtained from an intracortical recording array as part of an ongoing pilot clinical trial. We demonstrate that the standard Kalman filter gain converges to within 95% of the steady-state filter gain in 1.5 ± 0.5 s (mean ± s.d.). The difference in the intended movement velocity decoded by the two filters vanishes within 5 s, with a correlation coefficient of 0.99 between the two decoded velocities over the session length. We also find that the steady-state Kalman filter reduces the computational load (algorithm execution time) for decoding the firing rates of 25 ± 3 single units by a factor of 7.0 ± 0.9. We expect that the gain in computational efficiency will be much higher in systems with larger neural ensembles. The steady-state filter can thus provide substantial runtime efficiency at little cost in terms of estimation accuracy. This far more efficient neural decoding approach will facilitate the practical implementation of future large-dimensional, multisignal neural interface systems. PMID:21078582
HU, T.A.
2005-10-27
Assess the steady-state flammability level at normal and off-normal ventilation conditions. The hydrogen generation rate was calculated for 177 tanks using the rate equation model. Flammability calculations based on hydrogen, ammonia, and methane were performed for 177 tanks for various scenarios.
ROLE OF NMDA, NICOTINIC, AND GABA RECEPTORS IN THE STEADY STATE VISUAL EVOKED POTENTIAL IN RATS.
This manuscript characterizes the receptor pathways involved in pattern-evoked potential generation in rats
" NMDA and nicotinic acetylcholine receptors appear to be involved in the generation of the steady-state pattern evoked response in vivo.
" The pattern evok...
40 CFR Appendix II to Part 1042 - Steady-State Duty Cycles
Code of Federal Regulations, 2011 CFR
2011-07-01
... 40 Protection of Environment 33 2011-07-01 2011-07-01 false Steady-State Duty Cycles II Appendix II to Part 1042 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR POLLUTION CONTROLS CONTROL OF EMISSIONS FROM NEW AND IN-USE MARINE COMPRESSION-IGNITION ENGINES AND VESSELS Pt....
Current Pressure Transducer Application of Model-based Prognostics Using Steady State Conditions
NASA Technical Reports Server (NTRS)
Teubert, Christopher; Daigle, Matthew J.
2014-01-01
Prognostics is the process of predicting a system's future states, health degradation/wear, and remaining useful life (RUL). This information plays an important role in preventing failure, reducing downtime, scheduling maintenance, and improving system utility. Prognostics relies heavily on wear estimation. In some components, the sensors used to estimate wear may not be fast enough to capture brief transient states that are indicative of wear. For this reason it is beneficial to be capable of detecting and estimating the extent of component wear using steady-state measurements. This paper details a method for estimating component wear using steady-state measurements, describes how this is used to predict future states, and presents a case study of a current/pressure (I/P) Transducer. I/P Transducer nominal and off-nominal behaviors are characterized using a physics-based model, and validated against expected and observed component behavior. This model is used to map observed steady-state responses to corresponding fault parameter values in the form of a lookup table. This method was chosen because of its fast, efficient nature, and its ability to be applied to both linear and non-linear systems. Using measurements of the steady state output, and the lookup table, wear is estimated. A regression is used to estimate the wear propagation parameter and characterize the damage progression function, which are used to predict future states and the remaining useful life of the system.
TRANSIENT AND STEADY STATE STUDY OF PURE AND MIXED REFRIGERANTS IN A RESIDENTIAL HEAT PUMP
The report gives results of an experimental and theoretical investigation of the transient and steady state performance of a residential air-conditioning/heat pump (AC/HP) operating with different refrigerants. (NOTE: The project was motivated by environmental concerns related to...
Steady-State Clinical Pharmacokinetics of Bupropion Extended-Release In Youths
ERIC Educational Resources Information Center
Daviss, W. Burleson; Perel, James M.; Birmaher, Boris; Rudolph, George R.; Melhem, Imad; Axelson, David A.; Brent, David A.
2006-01-01
Objective: To examine in children and adolescents the 24-hour, steady-state clinical pharmacokinetics of an extended-release (XL) formulation of bupropion (Wellbutrin XL). Method: Subjects were six male and four female patients (ages 11.5-16.2 years) prescribed bupropion XL in morning daily doses of either 150 mg (n = 5) or 300 mg (n = 5) for at…
Incorporation of wind generation to the Mexican power grid: Steady state analysis
Tovar, J.H.; Guardado, J.L.; Cisneros, F.; Cadenas, R.; Lopez, S.
1997-09-01
This paper describes a steady state analysis related with the incorporation of large amounts of eolic generation into the Mexican power system. An equivalent node is used to represent individual eolic generators in the wind farm. Possible overloads, losses, voltage and reactive profiles and estimated severe contingencies are analyzed. Finally, the conclusions of this study are presented.
NASA Astrophysics Data System (ADS)
Hershey, Kyle W.; Holmes, Russell J.
2016-11-01
Phosphorescent organic light-emitting devices (OLEDs) can suffer a significant reduction in device efficiency under high current density excitation. This steady-state efficiency roll-off is frequently modeled by including losses from exciton-exciton and exciton-polaron quenching. Despite success in modeling the steady-state efficiency roll-off, the corresponding transient electroluminescence behavior has not been modeled as effectively using the same quenching processes. In this work, both the steady-state and transient electroluminescence behavior of phosphorescent OLEDs based on tris[2-phenylpyridinato-C2,N]Iridium(III) (Ir(ppy)3) are successfully reproduced by considering a dynamic polaron population. Within this model, polarons are able to either form excitons or leak through the device emissive layer, reducing the overall efficiency. This formalism permits a natural and rigorous connection between exciton and polaron dynamics and device charge balance, with the charge balance cast as the efficiency of exciton formation. The full dynamics model reproduces both the rise and decay of transient electroluminescence, as well as the full dependence of the external quantum efficiency on current density. Fit parameters are independently verified using separate studies of transient and steady-state photoluminescence. The model provides a complete picture for the dynamics present during the electrical operation of phosphorescent OLEDs, while also offering a direct route to elucidate exciton formation.
Stable long-term blood formation by stem cells in murine steady-state hematopoiesis.
Zavidij, Oksana; Ball, Claudia R; Herbst, Friederike; Oppel, Felix; Fessler, Sylvia; Schmidt, Manfred; von Kalle, Christof; Glimm, Hanno
2012-09-01
Hematopoietic stem cells (HSCs) generate all mature blood cells during the whole lifespan of an individual. However, the clonal contribution of individual HSC and progenitor cells in steady-state hematopoiesis is poorly understood. To investigate the activity of HSCs under steady-state conditions, murine HSC and progenitor cells were genetically marked in vivo by integrating lentiviral vectors (LVs) encoding green fluorescent protein (GFP). Hematopoietic contribution of individual marked clones was monitored by determination of lentiviral integration sites using highly sensitive linear amplification-mediated-polymerase chain reaction. A remarkably stable small proportion of hematopoietic cells expressed GFP in LV-injected animals for up to 24 months, indicating stable marking of murine steady-state hematopoiesis. Analysis of the lentiviral integration sites revealed that multiple hematopoietic clones with both myeloid and lymphoid differentiation potential contributed to long-term hematopoiesis. In contrast to intrafemoral vector injection, intravenous administration of LV preferentially targeted short-lived progenitor cells. Myelosuppressive treatment of mice prior to LV-injection did not affect the marking efficiency. Our study represents the first continuous analysis of clonal behavior of genetically marked hematopoietic cells in an unmanipulated system, providing evidence that multiple clones are simultaneously active in murine steady-state hematopoiesis.
Steady-state choice between four alternatives obeys the constant-ratio rule.
Bensemann, Joshua; Lobb, Brenda; Podlesnik, Christopher A; Elliffe, Douglas
2015-07-01
We investigated why violations to the constant-ratio rule, an assumption of the generalized matching law, occur in procedures that arrange frequent changes to reinforcer ratios. Our investigation produced steady-state data and compared them with data from equivalent, frequently changing procedures. Six pigeons responded in a four-alternative concurrent-schedule experiment with an arranged reinforcer-rate ratio of 27:9:3:1. The same four variable-interval schedules were used in every condition, for 50 sessions, and the physical location of each schedule was changed across conditions. The experiment was a steady-state version of a frequently changing procedure in which the locations of four VI schedules were changed every 10 reinforcers. We found that subjects' responding was consistent with the constant-ratio rule in the steady-state procedure. Additionally, local analyses showed that preference after reinforcement was towards the alternative that was likely to produce the next reinforcer, instead of being towards the just-reinforced alternative as in frequently changing procedures. This suggests that the effect of a reinforcer on preference is fundamentally different in rapidly changing and steady-state environments. Comparing this finding to the existing literature suggests that choice is more influenced by reinforcer-generated signals when the reinforcement contingencies often change.
A Sequential Procedure for Determining the Length of a Steady-State Simulation.
1977-04-01
A common problem faced by simulators is that of constructing a confidence interval for the steady-state mean of a stochastic process. We have...procedure based on the method of batch means for constructing a confidence interval with coverage close to the desired level. Empirical results for a large
HU TA
2009-10-26
Assess the steady-state flammability level at normal and off-normal ventilation conditions. The hydrogen generation rate was calculated for 177 tanks using the rate equation model. Flammability calculations based on hydrogen, ammonia, and methane were performed for 177 tanks for various scenarios.
40 CFR Appendix II to Part 1039 - Steady-State Duty Cycles
Code of Federal Regulations, 2010 CFR
2010-07-01
... II to Part 1039 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR POLLUTION CONTROLS CONTROL OF EMISSIONS FROM NEW AND IN-USE NONROAD COMPRESSION-IGNITION ENGINES Pt. 1039, App. II Appendix II to Part 1039—Steady-State Duty Cycles (a) The following duty cycles apply for...
40 CFR Appendix C to Subpart S of... - Steady-State Short Test Standards
Code of Federal Regulations, 2011 CFR
2011-07-01
... 40 Protection of Environment 2 2011-07-01 2011-07-01 false Steady-State Short Test Standards C Appendix C to Subpart S of Part 51 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED.../Maintenance Program Requirements Pt. 51, Subpt. S, App. C Appendix C to Subpart S of Part...
Analytical steady-state solutions for water-limited cropping systems using saline irrigation water
Technology Transfer Automated Retrieval System (TEKTRAN)
Due to the diminishing availability of good quality water for irrigation, it is increasingly important that irrigation and salinity management tools be able to target submaximal crop yields and support the use of marginal quality waters. In this work, we present a steady-state irrigated systems mod...
Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
Schellenberger, Jan; Lewis, Nathan E.; Palsson, Bernhard Ø.
2011-01-01
The constraint-based reconstruction and analysis (COBRA) framework has been widely used to study steady-state flux solutions in genome-scale metabolic networks. One shortcoming of current COBRA methods is the possible violation of the loop law in the computed steady-state flux solutions. The loop law is analogous to Kirchhoff's second law for electric circuits, and states that at steady state there can be no net flux around a closed network cycle. Although the consequences of the loop law have been known for years, it has been computationally difficult to work with. Therefore, the resulting loop-law constraints have been overlooked. Here, we present a general mixed integer programming approach called loopless COBRA (ll-COBRA), which can be used to eliminate all steady-state flux solutions that are incompatible with the loop law. We apply this approach to improve flux predictions on three common COBRA methods: flux balance analysis, flux variability analysis, and Monte Carlo sampling of the flux space. Moreover, we demonstrate that the imposition of loop-law constraints with ll-COBRA improves the consistency of simulation results with experimental data. This method provides an additional constraint for many COBRA methods, enabling the acquisition of more realistic simulation results. PMID:21281568
Proteome analysis of the Escherichia coli heat shock response under steady-state conditions
Lüders, Svenja; Fallet, Claas; Franco-Lara, Ezequiel
2009-01-01
In this study a proteomic approach was used to investigate the steady-state response of Escherichia coli to temperature up-shifts in a cascade of two continuously operated bioreactors. The first reactor served as cell source with optimal settings for microbial growth, while in the second chemostat the cells were exposed to elevated temperatures. By using this reactor configuration, which has not been reported to be used for the study of bacterial stress responses so far, it is possible to study temperature stress under well-defined, steady-state conditions. Specifically the effect on the cellular adaption to temperature stress using two-dimensional gel electrophoresis was examined and compared at the cultivation temperatures of 37°C and 47.5°C. As expected, the steady-state study with the double bioreactor configuration delivered a different protein spectrum compared to that obtained with standard batch experiments in shaking flasks and bioreactors. Setting a high cut-out spot-to-spot size ratio of 5, proteins involved in defence against oxygen stress, functional cell envelope proteins, chaperones and proteins involved in protein biosynthesis, the energy metabolism and the amino acid biosynthesis were found to be differently expressed at high cultivation temperatures. The results demonstrate the complexity of the stress response in a steady-state culture not reported elsewhere to date. PMID:19772559
Abnormal Attention in Autism Shown by Steady-State Visual Evoked Potentials.
ERIC Educational Resources Information Center
Belmonte, Matthew
2000-01-01
Eight males with autism were required to shift attention between rapidly flashed targets alternating between left and right visual hemifields. When targets were separated by less than 700 ms, steady-state brain electrical response in both hemispheres was augmented and background EEG decreased for rightward shifts as compared with leftward shifts.…
A hybrid multigrid technique for computing steady-state solutions to supersonic flows
NASA Technical Reports Server (NTRS)
Sanders, Richard
1992-01-01
Recently, Li and Sanders have introduced a class of finite difference schemes to approximate generally discontinuous solutions to hyperbolic systems of conservation laws. These equations have the form together with relevant boundary conditions. When modelling hypersonic spacecraft reentry, the differential equations above are frequently given by the compressible Euler equations coupled with a nonequilibrium chemistry model. For these applications, steady state solutions are often sought. Many tens (to hundreds) of super computer hours can be devoted to a single three space dimensional simulation. The primary difficulty is the inability to rapidly and reliably capture the steady state. In these notes, we demonstrate that a particular variant from the schemes presented can be combined with a particular multigrid approach to capture steady state solutions to the compressible Euler equations in one space dimension. We show that the rate of convergence to steady state coming from this multigrid implementation is vastly superior to the traditional approach of artificial time relaxation. Moreover, we demonstrate virtual grid independence. That is, the rate of convergence does not depend on the degree of spatial grid refinement.
The Cost Structure of Higher Education: Implications for Governmental Policy in Steady State.
ERIC Educational Resources Information Center
Lyell, Edward H.
The historical pattern of resource allocation in American higher education as exemplified by public colleges in Colorado was examined. The reliance upon average cost information in making resource allocation decisions was critiqued for the special problems that arise from student enrollment decline or steady state. A model of resource allocation…
40 CFR Appendix D to Subpart S of... - Steady-State Short Test Equipment
Code of Federal Regulations, 2014 CFR
2014-07-01
.../Maintenance Program Requirements Pt. 51, Subpt. S, App. D Appendix D to Subpart S of Part 51—Steady-State..., a flexible sample line, a water removal system, particulate trap, sample pump, flow control... flow rate in each leg of the probe has been measured under two sample pump flow rates (the normal...
40 CFR Appendix D to Subpart S of... - Steady-State Short Test Equipment
Code of Federal Regulations, 2012 CFR
2012-07-01
.../Maintenance Program Requirements Pt. 51, Subpt. S, App. D Appendix D to Subpart S of Part 51—Steady-State..., a flexible sample line, a water removal system, particulate trap, sample pump, flow control... flow rate in each leg of the probe has been measured under two sample pump flow rates (the normal...
40 CFR Appendix C to Subpart S of... - Steady-State Short Test Standards
Code of Federal Regulations, 2010 CFR
2010-07-01
... 40 Protection of Environment 2 2010-07-01 2010-07-01 false Steady-State Short Test Standards C Appendix C to Subpart S of Part 51 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED.../Maintenance Program Requirements Pt. 51, Subpt. S, App. C Appendix C to Subpart S of Part...
HU, T.A.
2000-04-27
This work is to assess the steady-state flammability level at normal and off-normal ventilation conditions in the tank dome space for 177 double-shell and single-shell tanks at Hanford. Hydrogen generation rate was calculated for 177 tanks using rate equation model developed recently.
Walkway Length Determination for Steady State Walking in Young and Older Adults
ERIC Educational Resources Information Center
Macfarlane, Pamela A.; Looney, Marilyn A.
2008-01-01
The primary purpose of this study was to determine acceleration (AC) and deceleration (DC) distances that would accommodate young and older adults walking at their preferred and fast speeds. A secondary purpose was to determine the minimal walkway length needed to record six steady state (SS) steps (three full gait cycles) for younger and older…
Radioactivity computation of steady-state and pulsed fusion reactors operation
Attaya, H.
1994-06-01
Different mathematical methods are used to calculate the nuclear transmutation in steady-state and pulsed neutron irradiation. These methods are the Schuer decomposition, the eigenvector decomposition, and the Pade approximation of the matrix exponential function. In the case of the linear decay chain approximation, a simple algorithm is used to evaluate the transition matrices.
System and method for generating steady state confining current for a toroidal plasma fusion reactor
Bers, Abraham
1981-01-01
A system for generating steady state confining current for a toroidal plasma fusion reactor providing steady-state generation of the thermonuclear power. A dense, hot toroidal plasma is initially prepared with a confining magnetic field with toroidal and poloidal components. Continuous wave RF energy is injected into said plasma to estalish a spectrum of traveling waves in the plasma, where the traveling waves have momentum components substantially either all parallel, or all anti-parallel to the confining magnetic field. The injected RF energy is phased to couple to said traveling waves with both a phase velocity component and a wave momentum component in the direction of the plasma traveling wave components. The injected RF energy has a predetermined spectrum selected so that said traveling waves couple to plasma electrons having velocities in a predetermined range .DELTA.. The velocities in the range are substantially greater than the thermal electron velocity of the plasma. In addition, the range is sufficiently broad to produce a raised plateau having width .DELTA. in the plasma electron velocity distribution so that the plateau electrons provide steady-state current to generate a poloidal magnetic field component sufficient for confining the plasma. In steady state operation of the fusion reactor, the fusion power density in the plasma exceeds the power dissipated inthe plasma.
System and method for generating steady state confining current for a toroidal plasma fusion reactor
Fisch, Nathaniel J.
1981-01-01
A system for generating steady state confining current for a toroidal plasma fusion reactor providing steady-state generation of the thermonuclear power. A dense, hot toroidal plasma is initially prepared with a confining magnetic field with toroidal and poloidal components. Continuous wave RF energy is injected into said plasma to establish a spectrum of traveling waves in the plasma, where the traveling waves have momentum components substantially either all parallel, or all anti-parallel to the confining magnetic field. The injected RF energy is phased to couple to said traveling waves with both a phase velocity component and a wave momentum component in the direction of the plasma traveling wave components. The injected RF energy has a predetermined spectrum selected so that said traveling waves couple to plasma electrons having velocities in a predetermined range .DELTA.. The velocities in the range are substantially greater than the thermal electron velocity of the plasma. In addition, the range is sufficiently broad to produce a raised plateau having width .DELTA. in the plasma electron velocity distribution so that the plateau electrons provide steady-state current to generate a poloidal magnetic field component sufficient for confining the plasma. In steady state operation of the fusion reactor, the fusion power density in the plasma exceeds the power dissipated in the plasma.
Thermal shock behaviour of blisters on W surface during combined steady-state/pulsed plasma loading
NASA Astrophysics Data System (ADS)
Jia, Y. Z.; Liu, W.; Xu, B.; Luo, G.-N.; Li, C.; Qu, S. L.; Morgan, T. W.; De Temmerman, G.
2015-09-01
The thermal shock behaviour of blister-covered W surfaces during combined steady-state/pulsed plasma loading was studied by scanning electron microscopy and electron backscatter diffraction. The W samples were first exposed to steady-state D plasma to induce blisters on the surface, and then the blistered surfaces were exposed to steady-state/pulsed plasma. Growth and cracking of blisters were observed after the exposure to the steady-state/pulsed plasma, while no obvious damage occurred on the surface area not covered with blisters. The results confirm that blisters induced by D plasma might represent weak spots on the W surface when exposed to transient heat load of ELMs. The cracks on blisters were different from the cracks due to the transient heat loads reported before, and they were assumed to be caused by stress and strain due to the gas expansion inside the blisters during the plasma pulses. Moreover, most of cracks were found to appear on the blisters formed on grains with surface orientation near [1 1 1].
Technology Transfer Automated Retrieval System (TEKTRAN)
Several flux-calculation (FC) schemes are available for determining soil-to-atmosphere emissions of nitrous oxide (N2O) and other trace gases using data from non-steady-state flux chambers. Recently developed methods claim to provide more accuracy in estimating the true pre-deployment flux (f0) comp...
Pre-steady-state kinetics for hydrolysis of insoluble cellulose by cellobiohydrolase Cel7A.
Cruys-Bagger, Nicolaj; Elmerdahl, Jens; Praestgaard, Eigil; Tatsumi, Hirosuke; Spodsberg, Nikolaj; Borch, Kim; Westh, Peter
2012-05-25
The transient kinetic behavior of enzyme reactions prior to the establishment of steady state is a major source of mechanistic information, yet this approach has not been utilized for cellulases acting on their natural substrate, insoluble cellulose. Here, we elucidate the pre-steady-state regime for the exo-acting cellulase Cel7A using amperometric biosensors and an explicit model for processive hydrolysis of cellulose. This analysis allows the identification of a pseudo-steady-state period and quantification of a processivity number as well as rate constants for the formation of a threaded enzyme complex, processive hydrolysis, and dissociation, respectively. These kinetic parameters elucidate limiting factors in the cellulolytic process. We concluded, for example, that Cel7A cleaves about four glycosidic bonds/s during processive hydrolysis. However, the results suggest that stalling the processive movement and low off-rates result in a specific activity at pseudo-steady state that is 10-25-fold lower. It follows that the dissociation of the enzyme-substrate complex (half-time of ~30 s) is rate-limiting for the investigated system. We suggest that this approach can be useful in attempts to unveil fundamental reasons for the distinctive variability in hydrolytic activity found in different cellulase-substrate systems.
Programmable calculator uses equation to figure steady-state gas-pipeline flow
Holmberg, E.
1982-04-26
Because it is accurate and consistent over a wide range of variables, the Colebrook-White (C-W) formula serves as the basis for many methods of calculating turbulent flow in gas pipelines. Oilconsult reveals a simple way to adapt the C-W formula to calculate steady-state pipeline flow using the TI-59 programmable calculator.
40 CFR Appendix C to Subpart S of... - Steady-State Short Test Standards
Code of Federal Regulations, 2012 CFR
2012-07-01
... 40 Protection of Environment 2 2012-07-01 2012-07-01 false Steady-State Short Test Standards C Appendix C to Subpart S of Part 51 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED.../Maintenance Program Requirements Pt. 51, Subpt. S, App. C Appendix C to Subpart S of Part...
40 CFR Appendix C to Subpart S of... - Steady-State Short Test Standards
Code of Federal Regulations, 2014 CFR
2014-07-01
... 40 Protection of Environment 2 2014-07-01 2014-07-01 false Steady-State Short Test Standards C Appendix C to Subpart S of Part 51 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED.../Maintenance Program Requirements Pt. 51, Subpt. S, App. C Appendix C to Subpart S of Part...
Efficient decoding with steady-state Kalman filter in neural interface systems.
Malik, Wasim Q; Truccolo, Wilson; Brown, Emery N; Hochberg, Leigh R
2011-02-01
The Kalman filter is commonly used in neural interface systems to decode neural activity and estimate the desired movement kinematics. We analyze a low-complexity Kalman filter implementation in which the filter gain is approximated by its steady-state form, computed offline before real-time decoding commences. We evaluate its performance using human motor cortical spike train data obtained from an intracortical recording array as part of an ongoing pilot clinical trial. We demonstrate that the standard Kalman filter gain converges to within 95% of the steady-state filter gain in 1.5±0.5 s (mean ±s.d.). The difference in the intended movement velocity decoded by the two filters vanishes within 5 s, with a correlation coefficient of 0.99 between the two decoded velocities over the session length. We also find that the steady-state Kalman filter reduces the computational load (algorithm execution time) for decoding the firing rates of 25±3 single units by a factor of 7.0±0.9. We expect that the gain in computational efficiency will be much higher in systems with larger neural ensembles. The steady-state filter can thus provide substantial runtime efficiency at little cost in terms of estimation accuracy. This far more efficient neural decoding approach will facilitate the practical implementation of future large-dimensional, multisignal neural interface systems.
An implicit steady-state initialization package for the RELAP5 computer code
Paulsen, M.P.; Peterson, C.E.; Odar, F.
1995-08-01
A direct steady-state initialization (DSSI) method has been developed and implemented in the RELAP5 hydrodynamic analysis program. It provides a means for users to specify a small set of initial conditions which are then propagated through the remainder of the system. The DSSI scheme utilizes the steady-state form of the RELAP5 balance equations for nonequilibrium two-phase flow. It also employs the RELAP5 component models and constitutive model packages for wall-to-phase and interphase momentum and heat exchange. A fully implicit solution of the linearized hydrodynamic equations is implemented. An implicit coupling scheme is used to augment the standard steady-state heat conduction solution for steam generator use. It solves the primary-side tube region energy equations, heat conduction equations, wall heat flux boundary conditions, and overall energy balance equation as a coupled system of equations and improves convergence. The DSSI method for initializing RELAP5 problems to steady-state conditions has been compared with the transient solution scheme using a suite of test problems including; adiabatic single-phase liquid and vapor flow through channels with and without healing and area changes; a heated two-phase test bundle representative of BWR core conditions; and a single-loop PWR model.
Steady-state chlorophyll flourescence (Fs) as a tool to monitor plant heat and drought stress
Technology Transfer Automated Retrieval System (TEKTRAN)
Crop yield decreases when photosynthesis is limited by heat or drought conditions. Yet farmers do not monitor crop photosynthesis because it is difficult to measure at the field scale in real time. Steady-state chlorophyll fluorescence (Fs) can be used at the field level as an indirect measure of p...
NASA Technical Reports Server (NTRS)
Sellers, J. F.; Daniele, C. J.
1975-01-01
The DYNGEN, a digital computer program for analyzing the steady state and transient performance of turbojet and turbofan engines, is described. The DYNGEN is based on earlier computer codes (SMOTE, GENENG, and GENENG 2) which are capable of calculating the steady state performance of turbojet and turbofan engines at design and off-design operating conditions. The DYNGEN has the combined capabilities of GENENG and GENENG 2 for calculating steady state performance; to these the further capability for calculating transient performance was added. The DYNGEN can be used to analyze one- and two-spool turbojet engines or two- and three-spool turbofan engines without modification to the basic program. A modified Euler method is used by DYNGEN to solve the differential equations which model the dynamics of the engine. This new method frees the programmer from having to minimize the number of equations which require iterative solution. As a result, some of the approximations normally used in transient engine simulations can be eliminated. This tends to produce better agreement when answers are compared with those from purely steady state simulations. The modified Euler method also permits the user to specify large time steps (about 0.10 sec) to be used in the solution of the differential equations. This saves computer execution time when long transients are run. Examples of the use of the program are included, and program results are compared with those from an existing hybrid-computer simulation of a two-spool turbofan.
40 CFR 86.1362-2007 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2010 CFR
2010-07-01
... procedures specified in § 86.1363-2007 through the 2009 model year. (a) Start sampling at the beginning of the first mode and continue sampling until the end of the last mode. Calculate emissions as described... meets the applicable steady-state emission standards: RMC mode Time in mode (seconds) Enginespeed...
40 CFR 86.1362-2010 - Steady-state testing with a ramped-modal cycle.
Code of Federal Regulations, 2010 CFR
2010-07-01
... describes how to test engines under steady-state conditions. For model years through 2009, manufacturers may use the mode order described in this section or in § 86.1362-2007. Starting in model year 2010 manufacturers must use the mode order described in this section with the following exception: for model...
A Steady State Visually Evoked Potential Investigation of Memory and Ageing
ERIC Educational Resources Information Center
Macpherson, Helen; Pipingas, Andrew; Silberstein, Richard
2009-01-01
Old age is generally accompanied by a decline in memory performance. Specifically, neuroimaging and electrophysiological studies have revealed that there are age-related changes in the neural correlates of episodic and working memory. This study investigated age-associated changes in the steady state visually evoked potential (SSVEP) amplitude and…
STEADY-STATE RELATIVISTIC STELLAR DYNAMICS AROUND A MASSIVE BLACK HOLE
Bar-Or, Ben; Alexander, Tal
2016-04-01
A massive black hole (MBH) consumes stars whose orbits evolve into the small phase-space volume of unstable orbits, the “loss cone,” which take them into the MBH, or close enough to interact strongly with it. The resulting phenomena, e.g., tidal heating and disruption, binary capture and hyper-velocity star ejection, gravitational wave (GW) emission by inspiraling compact remnants, or hydrodynamical interactions with an accretion disk, can produce observable signatures and thereby reveal the MBH, affect its mass and spin evolution, test strong gravity, and probe stars and gas near the MBH. These continuous stellar loss and resupply processes shape the central stellar distribution. We investigate relativistic stellar dynamics near the loss cone of a non-spinning MBH in steady state, analytically and by Monte Carlo simulations of the diffusion of the orbital parameters. These take into account Newtonian mass precession due to enclosed stellar mass, in-plane precession due to general relativity, dissipation by GW, uncorrelated two-body relaxation, correlated resonant relaxation (RR), and adiabatic invariance due to secular precession, using a rigorously derived description of correlated post-Newtonian dynamics in the diffusion limit. We argue that general maximal entropy considerations strongly constrain the orbital diffusion in steady state, irrespective of the relaxation mechanism. We identify the exact phase-space separatrix between plunges and inspirals, and predict their steady-state rates. We derive the dependence of the rates on the mass of the MBH, show that the contribution of RR in steady state is small, and discuss special cases where unquenched RR in restricted volumes of phase-space may affect the steady state substantially.
Analytical models of steady-state plumes undergoing sequential first-order degradation.
Burnell, Daniel K; Mercer, James W; Sims, Lawrence S
2012-01-01
An exact, closed-form analytical solution is derived for one-dimensional (1D), coupled, steady-state advection-dispersion equations with sequential first-order degradation of three dissolved species in groundwater. Dimensionless and mathematical analyses are used to examine the sensitivity of longitudinal dispersivity in the parent and daughter analytical solutions. The results indicate that the relative error decreases to less than 15% for the 1D advection-dominated and advection-dispersion analytical solutions of the parent and daughter when the Damköhler number of the parent decreases to less than 1 (slow degradation rate) and the Peclet number increases to greater than 6 (advection-dominated). To estimate first-order daughter product rate constants in advection-dominated zones, 1D, two-dimensional (2D), and three-dimensional (3D) steady-state analytical solutions with zero longitudinal dispersivity are also derived for three first-order sequentially degrading compounds. The closed form of these exact analytical solutions has the advantage of having (1) no numerical integration or evaluation of complex-valued error function arguments, (2) computational efficiency compared to problems with long times to reach steady state, and (3) minimal effort for incorporation into spreadsheets. These multispecies analytical solutions indicate that BIOCHLOR produces accurate results for 1D steady-state, applications with longitudinal dispersion. Although BIOCHLOR is inaccurate in multidimensional applications with longitudinal dispersion, these multidimensional multispecies analytical solutions indicate that BIOCHLOR produces accurate steady-state results when the longitudinal dispersion is zero. As an application, the 1D advection-dominated analytical solution is applied to estimate field-scale rate constants of 0.81, 0.74, and 0.69/year for trichloroethene, cis-1,2-dichloroethene, and vinyl chloride, respectively, at the Harris Palm Bay, FL, CERCLA site.
Uncertainties from the determination of the steady state in borehole climatology
NASA Astrophysics Data System (ADS)
Matharoo, G. S.; Beltrami, H.; Smerdon, J. E.
2010-12-01
Temperature changes at the Earth's surface propagate and are recorded underground as perturbations to the equilibrium thermal regime associated with the heat flow from the Earth's interior. Borehole climatology is concerned with the analysis and interpretation of these downward propagating subsurface temperature anomalies in terms of surface climate; as such proper determination of the steady-state geothermal regime is crucial because it is the reference that determines the size and shape of the climate induced subsurface temperature anomalies. Here we examine the effects of data noise, of lithological or instrumental origin, on the determination of the steady-state geothermal regime of the subsurface and provide error bounds for a particular choice of ground surface temperature (GST) history. From a series of 1000 Montecarlo experiments using Gaussian noise (mean = 0; standard devation = ±0.02 K), a 100 m steady-state fitting interval, and a data sampling rate of 0.02 m, our results indicate that typical uncertainties for 50-year averages are on the order of ± 0.02 K for the most recent 100 year period. These uncertainties grow with decreasing sampling rate reaching about ± 0.1 K for a 10-m sampling rate under identical conditions and target period. Uncertainties increase for progressively older periods, reaching ±0.2K at 500 year before present for a 10-m sampling rate. The uncertainties in reconstructed GST histories are also inversely proportional to the length of the fitting range used to estimate the reference steady-state thermal regime. We suggest that continuous logging should be the preferred approach when measuring geothermal data for climate reconstructions and that the steady-state geothermal gradient be estimated from a large depth range(>100 m).
Steady-state Relativistic Stellar Dynamics Around a Massive Black hole
NASA Astrophysics Data System (ADS)
Bar-Or, Ben; Alexander, Tal
2016-04-01
A massive black hole (MBH) consumes stars whose orbits evolve into the small phase-space volume of unstable orbits, the “loss cone,” which take them into the MBH, or close enough to interact strongly with it. The resulting phenomena, e.g., tidal heating and disruption, binary capture and hyper-velocity star ejection, gravitational wave (GW) emission by inspiraling compact remnants, or hydrodynamical interactions with an accretion disk, can produce observable signatures and thereby reveal the MBH, affect its mass and spin evolution, test strong gravity, and probe stars and gas near the MBH. These continuous stellar loss and resupply processes shape the central stellar distribution. We investigate relativistic stellar dynamics near the loss cone of a non-spinning MBH in steady state, analytically and by Monte Carlo simulations of the diffusion of the orbital parameters. These take into account Newtonian mass precession due to enclosed stellar mass, in-plane precession due to general relativity, dissipation by GW, uncorrelated two-body relaxation, correlated resonant relaxation (RR), and adiabatic invariance due to secular precession, using a rigorously derived description of correlated post-Newtonian dynamics in the diffusion limit. We argue that general maximal entropy considerations strongly constrain the orbital diffusion in steady state, irrespective of the relaxation mechanism. We identify the exact phase-space separatrix between plunges and inspirals, and predict their steady-state rates. We derive the dependence of the rates on the mass of the MBH, show that the contribution of RR in steady state is small, and discuss special cases where unquenched RR in restricted volumes of phase-space may affect the steady state substantially.
Karst, Daniel J; Steinhoff, Robert F; Kopp, Marie R G; Serra, Elisa; Soos, Miroslav; Zenobi, Renato; Morbidelli, Massimo
2016-12-20
Perfusion cell culture processes allow the steady-state culture of mammalian cells at high viable cell density, which is beneficial for overall product yields and homogeneity of product quality in the manufacturing of therapeutic proteins. In this study, the extent of metabolic steady state and the change of the metabolite profile between different steady states of an industrial Chinese hamster ovary (CHO) cell line producing a monoclonal antibody (mAb) was investigated in stirred tank perfusion bioreactors. Matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS) of daily cell extracts revealed more than a hundred peaks, among which 76 metabolites were identified by tandem MS (MS/MS) and high resolution Fourier transform ion cyclotron resonance (FT-ICR) MS. Nucleotide ratios (Uridine (U)-ratio, nucleotide triphosphate (NTP)-ratio and energy charge (EC)) and multivariate analysis of all features indicated a consistent metabolite profile for a stable culture performed at 40 × 10(6) cells/mL over 26 days of culture. Conversely, the reactor was operated continuously so as to reach three distinct steady states one after the other at 20, 60, and 40 × 10(6) cells/mL. In each case, a stable metabolite profile was achieved after an initial transient phase of approximately three days at constant cell density when varying between these set points. Clear clustering according to cell density was observed by principal component analysis, indicating steady-state dependent metabolite profiles. In particular, varying levels of nucleotides, nucleotide sugar, and lipid precursors explained most of the variance between the different cell density set points. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 2016.
A pre-steady state and steady state kinetic analysis of the N-ribosyl hydrolase activity of hCD157.
Preugschat, Frank; Carter, Luke H; Boros, Eric E; Porter, David J T; Stewart, Eugene L; Shewchuk, Lisa M
2014-12-15
hCD157 catalyzes the hydrolysis of nicotinamide riboside (NR) and nicotinic acid riboside (NAR). The release of nicotinamide or nicotinic acid from NR or NAR was confirmed by spectrophotometric, HPLC and NMR analyses. hCD157 is inactivated by a mechanism-based inhibitor, 2'-deoxy-2'-fluoro-nicotinamide arabinoside (fNR). Modification of the enzyme during the catalytic cycle by NR, NAR, or fNR increased the intrinsic protein fluorescence by approximately 50%. Pre-steady state and steady state data were used to derive a minimal kinetic scheme for the hydrolysis of NR. After initial complex formation a reversible step (360 and 30s(-1)) is followed by a slow irreversible step (0.1s(-1)) that defined the rate limiting step, or kcat. The calculated KMapp value for NR in the hydrolytic reaction is 6nM. The values of the kinetic constants suggest that one biological function of cell-surface hCD157 is to bind and slowly hydrolyze NR, possibly converting it to a ligand-activated receptor. Differences in substrate preference between hCD157 and hCD38 were rationalized through a comparison of the crystal structures of the two proteins. This comparison identified several residues in hCD157 (F108 and F173) that can potentially hinder the binding of dinucleotide substrates (NAD+).
Does the speed of shortening affect steady-state force depression in cat soleus muscle?
Leonard, T R; Herzog, W
2005-11-01
It has been stated repeatedly for the past 50 years that the steady-state force depression following shortening of an activated muscle depends on the speed of shortening. However, these statements were based on results from experiments in which muscles were shortened at different speeds but identical activation levels. Therefore, the force during shortening was changed in accordance with the force-velocity relationship of muscles: that is, increasing speeds of shortening were associated with decreasing forces, and vice versa. Consequently, it is not possible at present to distinguish whether force depression is caused by the changes in speed, as frequently stated, or the associated changes in force, or both. The purpose of this study was to test if force depression depends on the speed of shortening. We hypothesized that force depression was dependent on the force but not the speed of contraction. Our prediction is that the amount of force depression after shortening contractions at different speeds could be similar if the force during contraction was controlled at a similar level. Cat soleus muscles (n=7) were shortened by 9 or 12 mm at speeds of 3, 9, and 27 mm/s, first with a constant activation during shortening (30Hz), then with activation levels that were reduced (<30Hz) for the slow speeds (3 and 9 mm/s) to approximate the shortening forces of the fast speed contractions (27 mm/s). If done properly, force depression could be precisely matched at the three different speeds, indicating that force depression was related to the force during the shortening contraction but not to the speed. However, in order to match force depression, the forces during shortening had to be systematically greater for the slow compared to the fast speeds of shortening, suggesting that force depression also depends on the level of activation, as force depression at constant activation levels can only be matched if the force during shortening, evaluated by the mechanical work, is
Virok, Dezso P; Simon, Dóra; Bozsó, Zsolt; Rajkó, Róbert; Datki, Zsolt; Bálint, Éva; Szegedi, Viktor; Janáky, Tamás; Penke, Botond; Fülöp, Lívia
2011-04-01
Oligomeric amyloid-β is currently of interest in amyloid-β mediated toxicity and the pathogenesis of Alzheimer's disease. Mapping the amyloid-β interaction partners could help to discover novel pathways in disease pathogenesis. To discover the amyloid-β interaction partners, we applied a protein array with more than 8100 unique recombinantly expressed human proteins. We identified 324 proteins as potential interactors of oligomeric amyloid-β. The Gene Ontology functional analysis of these proteins showed that oligomeric amyloid-β bound to multiple proteins with diverse functions both from extra and intracellular localizations. This undiscriminating binding phenotype indicates that multiple protein interactions mediate the toxicity of the oligomeric amyloid-β. The most highly impacted cellular system was the protein translation machinery. Oligomeric amyloid-β could bind to altogether 24 proteins involved in translation initiation and elongation. The binding of amyloid-β to purified rat hippocampal ribosomes validated the protein array results. More importantly, in vitro translation assays showed that the oligomeric amyloid-β had a concentration dependent inhibitory activity on translation. Our results indicate that the inhibited protein synthesis is one of the pathways that can be involved in the amyloid-beta induced neurotoxicity.
Niu, Ningning; Xiang, Jian-Feng; Yang, Qin; Wang, Lijun; Wei, Zhanying; Chen, Ling-Ling; Yang, Li; Zou, Weiguo
2017-01-01
Protein translation regulation has essential roles in inflammatory responses, cancer initiation and the pathogenesis of several neurodegenerative disorders. However, the role of the regulation of protein translation in mammalian skeleton development has been rarely elaborated. Here we report that the lack of the RNA-binding protein sterile alpha motif domain containing protein 4 (SAMD4) resulted in multiple developmental defects in mice, including delayed bone development and decreased osteogenesis. Samd4-deficient mesenchymal progenitors exhibit impaired osteoblast differentiation and function. Mechanism study demonstrates that SAMD4 binds the Mig6 mRNA and inhibits MIG6 protein synthesis. Consistent with this, Samd4-deficient cells have increased MIG6 protein level and knockdown of Mig6 rescues the impaired osteogenesis in Samd4-deficient cells. Furthermore, Samd4-deficient mice also display chondrocyte defects, which is consistent with the regulation of MIG6 protein level by SAMD4. These findings define SAMD4 as a previously unreported key regulator of osteoblastogenesis and bone development, implying that regulation of protein translation is an important mechanism governing skeletogenesis and that control of protein translation could have therapeutic potential in metabolic bone diseases, such as osteoporosis. PMID:28163927
Inhibition of eukaryotic translation by tetratricopeptide-repeat proteins of Orientia tsutsugamushi.
Bang, Sunyoung; Min, Chan-Ki; Ha, Na-Young; Choi, Myung-Sik; Kim, Ik-Sang; Kim, Yeon-Sook; Cho, Nam-Hyuk
2016-02-01
Orientia tsutsugamushi, an obligate intracellular bacterium, is the causative agent of scrub typhus. The genome of Orientia tsutsugamushi has revealed multiple ORFs encoding tetratricopeptide-repeat (TPR) proteins. The TPR protein family has been shown to be involved in a diverse spectrum of cellular functions such as cell cycle control, transcription, protein transport, and protein folding, especially in eukaryotic cells. However, little is known about the function of the TPR proteins in O. tsutsugamushi. To investigate the potential role of TPR proteins in host-pathogen interaction, two oriential TPR proteins were expressed in E. coli and applied for GSTpull down assay. DDX3, a DEAD-box containing RNA helicase, was identified as a specific eukaryotic target of the TPR proteins. Since the RNA helicase is involved in multiple RNA-modifying processes such as initiation of translation reaction, we performed in vitro translation assay in the presence of GST-TPR fusion proteins by using rabbit reticulocyte lysate system. The TPR proteins inhibited in vitro translation of a reporter luciferase in a dose dependent manner whereas the GST control proteins did not. These results suggested TPR proteins of O. tsutsugamushi might be involved in the modulation of eukaryotic translation through the interaction with DDX3 RNA helicase after secretion into host cytoplasm.
Suganuma, Tamaki; Swanson, Selene K; Florens, Laurence; Washburn, Michael P; Workman, Jerry L
2016-02-01
Molybdenum cofactor (Moco) biosynthesis is linked to c-Jun N-terminal kinase (JNK) signaling in Drosophila through MoaE, a molybdopterin (MPT) synthase subunit that is also a component of the Ada Two A containing (ATAC) acetyltransferase complex. Here, we show that human MPT synthase and ATAC inhibited PKR, a double-stranded RNA-dependent protein kinase, to facilitate translation initiation of iron-responsive mRNA. MPT synthase and ATAC directly interacted with PKR and suppressed latent autophosphorylation of PKR and its downstream phosphorylation of JNK and eukaryotic initiation factor 2α (eIF2α). The suppression of eIF2α phosphorylation via MPT synthase and ATAC prevented sequestration of the guanine nucleotide exchange factor eIF2B, which recycles eIF2-GDP to eIF2-GTP, resulting in the promotion of translation initiation. Indeed, translation of the iron storage protein, ferritin, was reduced in the absence of MPT synthase or ATAC subunits. Thus, MPT synthase and ATAC regulate latent PKR signaling and link transcription and translation initiation.
NASA Astrophysics Data System (ADS)
Boulin, P. F.; Bretonnier, P.; Gland, N.
2010-12-01
Very low permeability geomaterials (order of nanoDarcy (10-21 m2)), such as clays rocks, are studied for many industrial applications such as production from unconventional reserves of oil and gas, CO2 geological storage and deep geological disposal of high-level long-lived nuclear wastes. For these last two applications, clay efficiency as barrier relies mainly on their very low permeability. Laboratory measurement of low permeability to water (below 10-19 m2) remains a technical challenge. Some authors argue that steady state methods are irrelevant due to the time required to stabilize water fluxes in such low permeability media. Most of the authors measuring low permeabilities use a transient technique called pulse decay. This study aims to compare objectively these different types of permeability tests performed on a single clay sample. For the steady state method, a high precision pump was used to impose a pressure gradient and to measure the small resulting water flow rate at steady state. We show that with a suitable set-up, the steady state method enables to measure a very low permeability of 8 10-22 m2 in a period of three days. For a comparable duration, the pulse decay test, most commonly used for such low permeability measurements, provides only an average estimate of the permeability. Permeability measurements by pulse decay require to perform simulations to interpret the pressure relaxation signals. Many uncertainties remain such as the determination of the reservoirs storage factor, micro leakage effect, or the determination of the initial pulse pressure. All these uncertainties have a very significant impact on the determination of sample permeability and specific storage. Opposite to the wide-spread idea that transient techniques are required to measure very low permeability, we show that direct steady state measurement of water permeability with suitable equipments can be much faster and more accurate than measurement by pulse decay, especially in
Steady-State Cycle Deck Launcher Developed for Numerical Propulsion System Simulation
NASA Technical Reports Server (NTRS)
VanDrei, Donald E.
1997-01-01
One of the objectives of NASA's High Performance Computing and Communications Program's (HPCCP) Numerical Propulsion System Simulation (NPSS) is to reduce the time and cost of generating aerothermal numerical representations of engines, called customer decks. These customer decks, which are delivered to airframe companies by various U.S. engine companies, numerically characterize an engine's performance as defined by the particular U.S. airframe manufacturer. Until recently, all numerical models were provided with a Fortran-compatible interface in compliance with the Society of Automotive Engineers (SAE) document AS681F, and data communication was performed via a standard, labeled common structure in compliance with AS681F. Recently, the SAE committee began to develop a new standard: AS681G. AS681G addresses multiple language requirements for customer decks along with alternative data communication techniques. Along with the SAE committee, the NPSS Steady-State Cycle Deck project team developed a standard Application Program Interface (API) supported by a graphical user interface. This work will result in Aerospace Recommended Practice 4868 (ARP4868). The Steady-State Cycle Deck work was validated against the Energy Efficient Engine customer deck, which is publicly available. The Energy Efficient Engine wrapper was used not only to validate ARP4868 but also to demonstrate how to wrap an existing customer deck. The graphical user interface for the Steady-State Cycle Deck facilitates the use of the new standard and makes it easier to design and analyze a customer deck. This software was developed following I. Jacobson's Object-Oriented Design methodology and is implemented in C++. The AS681G standard will establish a common generic interface for U.S. engine companies and airframe manufacturers. This will lead to more accurate cycle models, quicker model generation, and faster validation leading to specifications. The standard will facilitate cooperative work between
Quantum transport in networks and photosynthetic complexes at the steady state.
Manzano, Daniel
2013-01-01
Recently, several works have analysed the efficiency of photosynthetic complexes in a transient scenario and how that efficiency is affected by environmental noise. Here, following a quantum master equation approach, we study the energy and excitation transport in fully connected networks both in general and in the particular case of the Fenna-Matthew-Olson complex. The analysis is carried out for the steady state of the system where the excitation energy is constantly "flowing" through the system. Steady state transport scenarios are particularly relevant if the evolution of the quantum system is not conditioned on the arrival of individual excitations. By adding dephasing to the system, we analyse the possibility of noise-enhancement of the quantum transport.
A periodogram-based method for the detection of steady-state visually evoked potentials.
Liavas, A P; Moustakides, G V; Henning, G; Psarakis, E Z; Husar, P
1998-02-01
The task of objective perimetry is to scan the visual field and find an answer about the function of the visual system. Flicker-burst stimulation--a physiological sensible combination of transient and steady-state stimulation--is used to generate deterministic sinusoidal responses or visually evoked potentials (VEP's) at the visual cortex, which are derived from the electroencephalogram by a suitable electrode array. In this paper we develop a new method for the detection of VEP's. Based on the periodogram of a time-series, we test the data for the presence of hidden periodic components, which correspond to steady-state VEP's. The method is applied successfully to real data.
Thermal-Conductivity Apparatus for Steady-State, Comparative Measurement of Ceramic Coatings.
Slifka, A J
2000-01-01
An apparatus has been developed to measure the thermal conductivity of ceramic coatings. Since the method uses an infrared microscope for temperature measurement, coatings as thin as 20 μm can, in principle, be measured using this technique. This steady-state, comparative measurement method uses the known thermal conductivity of the substrate material as the reference material for heat-flow measurement. The experimental method is validated by measuring a plasma-sprayed coating that has been previously measured using an absolute, steady-state measurement method. The new measurement method has a relative standard uncertainty of about 10 %. The measurement of the plasma-sprayed coating gives 0.58 W·m(-1)·K(-l) which compares well with the 0.62 W·m(-1)·K(-l) measured using the absolute method.
Implicit Total Variation Diminishing (TVD) schemes for steady-state calculations
NASA Technical Reports Server (NTRS)
Yee, H. C.; Warming, R. F.; Harten, A.
1983-01-01
The application of a new implicit unconditionally stable high resolution total variation diminishing (TVD) scheme to steady state calculations. It is a member of a one parameter family of explicit and implicit second order accurate schemes developed by Harten for the computation of weak solutions of hyperbolic conservation laws. This scheme is guaranteed not to generate spurious oscillations for a nonlinear scalar equation and a constant coefficient system. Numerical experiments show that this scheme not only has a rapid convergence rate, but also generates a highly resolved approximation to the steady state solution. A detailed implementation of the implicit scheme for the one and two dimensional compressible inviscid equations of gas dynamics is presented. Some numerical computations of one and two dimensional fluid flows containing shocks demonstrate the efficiency and accuracy of this new scheme.
NASA Technical Reports Server (NTRS)
Wang, Jai-Ching
1994-01-01
The lateral solute segregation that results from a curved solid-liquid interface shape during steady state unidirectional solidification of a binary alloy system has been studied both analytically and numerically by Coriell, Bosivert, Rehm, and Sekerka. The system under their study is a two dimensional rectangular system. However, most real growth systems are cylindrical systems. Thus, in a previous study, we have followed Coriell etc. formalism and obtained analytical results for lateral solute segregation for an azimuthal symmetric cylindrical binary melt system during steady state solidification process. The solid-liquid interface shape is expressed as a series combination of Bessel functions. In this study a computer program has been developed to simulate the lateral solute segregation.
Iterative solutions to the steady-state density matrix for optomechanical systems
NASA Astrophysics Data System (ADS)
Nation, P. D.; Johansson, J. R.; Blencowe, M. P.; Rimberg, A. J.
2015-01-01
We present a sparse matrix permutation from graph theory that gives stable incomplete lower-upper preconditioners necessary for iterative solutions to the steady-state density matrix for quantum optomechanical systems. This reordering is efficient, adding little overhead to the computation, and results in a marked reduction in both memory and runtime requirements compared to other solution methods, with performance gains increasing with system size. Either of these benchmarks can be tuned via the preconditioner accuracy and solution tolerance. This reordering optimizes the condition number of the approximate inverse and is the only method found to be stable at large Hilbert space dimensions. This allows for steady-state solutions to otherwise intractable quantum optomechanical systems.
Comparison of steady-state and transient CVS cycle emission of an automotive Stirling engine
NASA Technical Reports Server (NTRS)
Farrell, R. A.; Bolton, R. J.
1983-01-01
The Automotive Stirling Engine Development Program is to demonstrate a number of goals for a Stirling-powered vehicle. These goals are related to an achievement of specified maximum emission rates, a combined cycle fuel economy 30 percent better than a comparable internal-combustion engine-powered automobile, multifuel capability, competitive cost and reliability, and a meeting of Federal standards concerning noise and safety. The present investigation is concerned with efforts related to meeting the stringent emission goals. Attention is given to the initial development of a procedure for predicting transient CVS urban cycle gaseous emissions from steady-state engine data, taking into account the employment of the test data from the first-generation automotive Stirling engine. A large amount of steady-state data from three Mod I automotive Stirling engines were used to predict urban CVS cycle emissions for the Mod I Lerma vehicle.
Steady-state visually evoked potentials: focus on essential paradigms and future perspectives.
Vialatte, François-Benoît; Maurice, Monique; Dauwels, Justin; Cichocki, Andrzej
2010-04-01
After 40 years of investigation, steady-state visually evoked potentials (SSVEPs) have been shown to be useful for many paradigms in cognitive (visual attention, binocular rivalry, working memory, and brain rhythms) and clinical neuroscience (aging, neurodegenerative disorders, schizophrenia, ophthalmic pathologies, migraine, autism, depression, anxiety, stress, and epilepsy). Recently, in engineering, SSVEPs found a novel application for SSVEP-driven brain-computer interface (BCI) systems. Although some SSVEP properties are well documented, many questions are still hotly debated. We provide an overview of recent SSVEP studies in neuroscience (using implanted and scalp EEG, fMRI, or PET), with the perspective of modern theories about the visual pathway. We investigate the steady-state evoked activity, its properties, and the mechanisms behind SSVEP generation. Next, we describe the SSVEP-BCI paradigm and review recently developed SSVEP-based BCI systems. Lastly, we outline future research directions related to basic and applied aspects of SSVEPs.
Liu, H. H.
2010-09-15
Optimality principles have been used for investigating physical processes in different areas. This work attempts to apply an optimal principle (that water flow resistance is minimized on global scale) to steady-state unsaturated flow processes. Based on the calculus of variations, we show that under optimal conditions, hydraulic conductivity for steady-state unsaturated flow is proportional to a power function of the magnitude of water flux. This relationship is consistent with an intuitive expectation that for an optimal water flow system, locations where relatively large water fluxes occur should correspond to relatively small resistance (or large conductance). Similar results were also obtained for hydraulic structures in river basins and tree leaves, as reported in other studies. Consistence of this theoretical result with observed fingering-flow behavior in unsaturated soils and an existing model is also demonstrated.
Thermal-Conductivity Apparatus for Steady-State, Comparative Measurement of Ceramic Coatings
Slifka, A. J.
2000-01-01
An apparatus has been developed to measure the thermal conductivity of ceramic coatings. Since the method uses an infrared microscope for temperature measurement, coatings as thin as 20 μm can, in principle, be measured using this technique. This steady-state, comparative measurement method uses the known thermal conductivity of the substrate material as the reference material for heat-flow measurement. The experimental method is validated by measuring a plasma-sprayed coating that has been previously measured using an absolute, steady-state measurement method. The new measurement method has a relative standard uncertainty of about 10 %. The measurement of the plasma-sprayed coating gives 0.58 W·m−1·K−l which compares well with the 0.62 W·m−1·K−l measured using the absolute method. PMID:27551628
Effect of transverse magnetic field on the steady state properties of Plasma Diodes
NASA Astrophysics Data System (ADS)
Pramanik, Sourav; Kuznetsov, Victor; Chakrabarti, Nikhil
2016-10-01
A study of the steady-states of the Plasma Diodes (e.g., Bursian diode, Pierce diode etc.) driven by a cold electron beam is presented in presence of an external transverse magnetic field is presented. Both the regimes of no electron-reflection and electron-reflection are taken into account. Steady state solutions are evaluated using emitter electric field as a characteristic parameters, for fixed values of the diode length, applied voltage, and magnetic field strength. For our purpose, both the Eulerian and Lagrangian descriptions are employed. It is shown that transverse magnetic field has profound influences on the space charge limit, maximum diode current, aperiodic instability and other characteristic parameters. An external magnetic field can be used to design fast electronic switches based on its effects on the Plasma diode.
Diagnostics and control for the steady state and pulsed tokamak DEMO
NASA Astrophysics Data System (ADS)
Orsitto, F. P.; Villari, R.; Moro, F.; Todd, T. N.; Lilley, S.; Jenkins, I.; Felton, R.; Biel, W.; Silva, A.; Scholz, M.; Rzadkiewicz, J.; Duran, I.; Tardocchi, M.; Gorini, G.; Morlock, C.; Federici, G.; Litnovsky, A.
2016-02-01
The present paper is devoted to a first assessment of the DEMO diagnostics systems and controls in the context of pulsed and steady state reactor design under study in Europe. In particular, the main arguments treated are: (i) The quantities to be measured in DEMO and the requirements for the measurements; (ii) the present capability of the diagnostic and control technology, determining the most urgent gaps, and (iii) the program and strategy of the research and development (R&D) needed to fill the gaps. Burn control, magnetohydrodynamic stability, and basic machine protection require improvements to the ITER technology, and moderated efforts in R&D can be dedicated to infrared diagnostics (reflectometry, electron cyclotron emission, polarimetry) and neutron diagnostics. Metallic Hall sensors appear to be a promising candidate for magnetic measurements in the high neutron fluence and long/steady state discharges of DEMO.
Steady states and global dynamics of electrical activity in the cerebral cortex
NASA Astrophysics Data System (ADS)
Robinson, P. A.; Rennie, C. J.; Wright, J. J.; Bourke, P. D.
1998-09-01
Steady states and global dynamics of electrical activity in the cerebral cortex are investigated within the framework of a recent continuum model. It is shown that for a particular physiologically realistic class of models, at most three steady states can occur, two of which are stable. The global dynamics of spatially uniform activity states is studied and it is shown that in a physiologically realistic class of models, the adiabatic dynamics is governed by a second-order differential equation equivalent to that for the motion of a Newtonian particle in a potential in the presence of friction. This result is used to derive a simplified dynamical equation in the friction-dominated limit. Solutions of these equations are compared with those of the full global dynamics equations and it is found that they are adequate for time scales longer than approximately 100 ms provided dendritic integration times are less than approximately 10 ms.
NASA Astrophysics Data System (ADS)
Bogoslovskiy, Nikita; Tsendin, Konstantin
2017-03-01
In the phase-change memory (PCM) crystallization occurs in the high-current filament which forms during switching to the conductive state. In the present paper we conduct a numerical modeling of the current filament formation dynamics in thin chalcogenide films using an electronic-thermal model based on negative-U centers tunnel ionization and Joule heating. The key role of inhomogeneities in the filament formation process is shown. Steady-state filament parameters were obtained from the analysis of the stationary heat conduction equation. The filament formation dynamics and the steady-state filament radius and temperature could be controlled by material parameters and contact resistance. Consequently it is possible to control the size of the region wherein crystallization occurs. A good agreement with numerous experimental data leads to the conclusion that thermal effects play a significant role in CGS conduction and high-current filament formation while switching.
Non-steady-state operation of polymer/TiO2 photovoltaic devices
NASA Astrophysics Data System (ADS)
Kirov, Kiril R.; Burlakov, Victor M.; Xie, Zhibin; Henry, Bernard M.; Carey, Michelle J.; Grovenor, Christopher R. M.; Burn, Paul L.; Assender, Hazel E.; Briggs, G. Andrew D.
2004-11-01
We present data on the initial period of operation of Gilch-route MEH-PPV/TiO2 composite solar cells (CSCs) which show that during this period the CSCs operate in a non-steady state regime. The behavior is complex and may include a gradual rise of the open circuit voltage (Voc) and of the short-circuit current density (Jsc) with time, a passage through a maximum of either or both parameters, and even a sign reversal. The mechanisms most probably contributing to the transient processes are: i) diffusion driven redistribution of charges resulting in the build up of a quasi steady state charge density profile across the device; ii) photo-doping resulting in a relatively slow increase of the average charge carrier concentration and consequently of the conductivity of the device. The latter is responsible for a strong decrease in Voc, and is evidenced by the significant increase in dark current after device illumination.
Steady-state EB cap size fluctuations are determined by stochastic microtubule growth and maturation
Rickman, Jamie; Duellberg, Christian; Cade, Nicholas I.; Griffin, Lewis D.; Surrey, Thomas
2017-01-01
Growing microtubules are protected from depolymerization by the presence of a GTP or GDP/Pi cap. End-binding proteins of the EB1 family bind to the stabilizing cap, allowing monitoring of its size in real time. The cap size has been shown to correlate with instantaneous microtubule stability. Here we have quantitatively characterized the properties of cap size fluctuations during steady-state growth and have developed a theory predicting their timescale and amplitude from the kinetics of microtubule growth and cap maturation. In contrast to growth speed fluctuations, cap size fluctuations show a characteristic timescale, which is defined by the lifetime of the cap sites. Growth fluctuations affect the amplitude of cap size fluctuations; however, cap size does not affect growth speed, indicating that microtubules are far from instability during most of their time of growth. Our theory provides the basis for a quantitative understanding of microtubule stability fluctuations during steady-state growth. PMID:28280102
Realization of minute-long steady-state H-mode discharges on EAST
NASA Astrophysics Data System (ADS)
Xianzu, GONG; Baonian, WAN; Jiangang, LI; Jinping, QIAN; Erzhong, LI; Fukun, LIU; Yanping, ZHAO; Mao, WANG; Handong, XU; A, M. GAROFALO; Annika, EKEDAH; Siye, DING; Juan, HUANG; Ling, ZHANG; Qing, ZANG; Haiqing, LIU; Long, ZENG; Shiyao, LIN; Biao, SHEN; Bin, ZHANG; Linming, SHAO; Bingjia, XIAO; Jiansheng, HU; Chundong, HU; Liqun, HU; Liang, WANG; Youwen, SUN; Guosheng, XU; Yunfeng, LIANG; Nong, XIANG; EAST Team
2017-03-01
In the 2016 EAST experimental campaign, a steady-state long-pulse H-mode discharge with an ITER-like tungsten divertor lasting longer than one minute has been obtained using only RF heating and current drive, through an integrated control of the wall conditioning, plasma configuration, divertor heat flux, particle exhaust, impurity management, and effective coupling of multiple RF heating and current drive sources at high injected power. The plasma current (I p ∼ 0.45 MA) was fully-noninductively driven (V loop < 0.0 V) by a combination of ∼2.5 MW LHW, ∼0.4 MW ECH and ∼0.8 MW ICRF. This result demonstrates the progress of physics and technology studies on EAST, and will benefit the physics basis for steady state operation of ITER and CFETR.
Steady-State Somatosensory Evoked Potential for Brain-Computer Interface—Present and Future
Ahn, Sangtae; Kim, Kiwoong; Jun, Sung Chan
2016-01-01
Brain-computer interface (BCI) performance has achieved continued improvement over recent decades, and sensorimotor rhythm-based BCIs that use motor function have been popular subjects of investigation. However, it remains problematic to introduce them to the public market because of their low reliability. As an alternative resolution to this issue, visual-based BCIs that use P300 or steady-state visually evoked potentials (SSVEPs) seem promising; however, the inherent visual fatigue that occurs with these BCIs may be unavoidable. For these reasons, steady-state somatosensory evoked potential (SSSEP) BCIs, which are based on tactile selective attention, have gained increasing attention recently. These may reduce the fatigue induced by visual attention and overcome the low reliability of motor activity. In this literature survey, recent findings on SSSEP and its methodological uses in BCI are reviewed. Further, existing limitations of SSSEP BCI and potential future directions for the technique are discussed. PMID:26834611
PEBBLE: a two-dimensional steady-state pebble bed reactor thermal hydraulics code
Vondy, D.R.
1981-09-01
This report documents the local implementation of the PEBBLE code to treat the two-dimensional steady-state pebble bed reactor thermal hydraulics problem. This code is implemented as a module of a computation system used for reactor core history calculations. Given power density data, the geometric description in (RZ), and basic heat removal conditions and thermal properties, the coolant properties, flow conditions, and temperature distributions in the pebble fuel elements are predicted. The calculation is oriented to the continuous fueling, steady state condition with consideration of the effect of the high energy neutron flux exposure and temperature history on the thermal conductivity. The coolant flow conditions are calculated for the same geometry as used in the neutronics calculation, power density and fluence data being used directly, and temperature results are made available for subsequent use.
A computer simulation using spreadsheets for learning concept of steady-state equilibrium
NASA Astrophysics Data System (ADS)
Sharda, Vandana; Sastri, O. S. K. S.; Bhardwaj, Jyoti; Jha, Arbind K.
2016-03-01
In this paper, we present a simple spreadsheet based simulation activity that can be performed by students at the undergraduate level. This simulation is implemented in free open source software (FOSS) LibreOffice Calc, which is available for both Windows and Linux platform. This activity aims at building the probability distribution for the possible macro-states of a system. This has been achieved by randomly sampling the configuration space consisting of all the possible microstates and determining the corresponding macrostate for each of the samples, which is akin to Monte-Carlo simulation. This simulation could act as a very useful tool in engaging students for learning the concepts of microstates, macrostates and steady state equilibrium, once the ideas have been introduced in the classroom. Further, the effect of the number of particles on the quality of steady state equilibrium achieved demonstrates the idea of thermodynamic limit.
Composing Problem Solvers for Simulation Experimentation: A Case Study on Steady State Estimation
Leye, Stefan; Ewald, Roland; Uhrmacher, Adelinde M.
2014-01-01
Simulation experiments involve various sub-tasks, e.g., parameter optimization, simulation execution, or output data analysis. Many algorithms can be applied to such tasks, but their performance depends on the given problem. Steady state estimation in systems biology is a typical example for this: several estimators have been proposed, each with its own (dis-)advantages. Experimenters, therefore, must choose from the available options, even though they may not be aware of the consequences. To support those users, we propose a general scheme to aggregate such algorithms to so-called synthetic problem solvers, which exploit algorithm differences to improve overall performance. Our approach subsumes various aggregation mechanisms, supports automatic configuration from training data (e.g., via ensemble learning or portfolio selection), and extends the plugin system of the open source modeling and simulation framework James II. We show the benefits of our approach by applying it to steady state estimation for cell-biological models. PMID:24705453
Dynamic relaxation of a levitated nanoparticle from a non-equilibrium steady state.
Gieseler, Jan; Quidant, Romain; Dellago, Christoph; Novotny, Lukas
2014-05-01
Fluctuation theorems are a generalization of thermodynamics on small scales and provide the tools to characterize the fluctuations of thermodynamic quantities in non-equilibrium nanoscale systems. They are particularly important for understanding irreversibility and the second law in fundamental chemical and biological processes that are actively driven, thus operating far from thermal equilibrium. Here, we apply the framework of fluctuation theorems to investigate the important case of a system relaxing from a non-equilibrium state towards equilibrium. Using a vacuum-trapped nanoparticle, we demonstrate experimentally the validity of a fluctuation theorem for the relative entropy change occurring during relaxation from a non-equilibrium steady state. The platform established here allows non-equilibrium fluctuation theorems to be studied experimentally for arbitrary steady states and can be extended to investigate quantum fluctuation theorems as well as systems that do not obey detailed balance.
Steady-State Dynamic Behavior of a Flexible Rotor With Auxiliary Support From a Clearance Bearing
NASA Technical Reports Server (NTRS)
Xie, Huajun; Flowers, George T.; Feng, Li; Lawrence, Charles T.
1996-01-01
This paper investigates the steady-state responses of a rotor system supported by auxiliary bearings in which there is a clearance between the rotor and the inner race of the bearing. A simulation model based upon the rotor of a production jet engine is developed and its steady-state behavior is explored over a wide range of operating conditions for various parametric configurations. Specifically, the influence of rotor imbalance, clearance, support stiffness and damping is studied. Bifurcation diagrams are used as a tool to examine the dynamic behavior of this system as a function of the afore mentioned parameters. The harmonic balance method is also employed for synchronous response cases. The observed dynamical responses is discussed and some insights into the behavior of such systems are presented.
Steady-state mechanical squeezing in a double-cavity optomechanical system
Wang, Dong-Yang; Bai, Cheng-Hua; Wang, Hong-Fu; Zhu, Ai-Dong; Zhang, Shou
2016-01-01
We study the physical properties of double-cavity optomechanical system in which the mechanical resonator interacts with one of the coupled cavities and another cavity is used as an auxiliary cavity. The model can be expected to achieve the strong optomechanical coupling strength and overcome the optomechanical cavity decay, simultaneously. Through the coherent auxiliary cavity interferences, the steady-state squeezing of mechanical resonator can be generated in highly unresolved sideband regime. The validity of the scheme is assessed by numerical simulation and theoretical analysis of the steady-state variance of the mechanical displacement quadrature. The scheme provides a platform for the mechanical squeezing beyond the resolved sideband limit and solves the restricted experimental bounds at present. PMID:27917939
Steady-state boundary lubrication with formulated C-ethers to 260 C
NASA Technical Reports Server (NTRS)
Loomis, W. R.
1981-01-01
Steady state wear and friction studies were made at boundary lubrication conditions in a pin on disk (pure iron on rotating CVM M 50 steel) sliding friction apparatus with five C ether formulated fluids (modified polyphenyl ether containing phosphrous ester, organic acid, and other additives). Conditions included 20, 150, and 260 C disk temperatures, dry air test atmosphere, 1 kilogram load, 50 rpm disk speed, and test times to 130 minutes. Results were compared with those obtained with a formulated MIL L 27502 candidate ester and the C ether base fluid. Three of the C ether formulations gave better lubrication than both reference fluids under most conditions. The other two C ether formulations yielded higher wear rates and friction coefficients than the C ether base fluid for most of the temperature range. Only one C ether formulation showed consistently higher steady state wear rates than the ester.
Nonequilibrium density-matrix description of steady-state quantum transport.
Dhar, Abhishek; Saito, Keiji; Hänggi, Peter
2012-01-01
With this work we investigate the stationary nonequilibrium density matrix of current carrying nonequilibrium steady states of in-between quantum systems that are connected to reservoirs. We describe the analytical procedure to obtain the explicit result for the reduced density matrix of quantum transport when the system, the connecting reservoirs, and the system-reservoir interactions are described by quadratic Hamiltonians. Our procedure is detailed for both electronic transport described by the tight-binding Hamiltonian and for phonon transport described by harmonic Hamiltonians. For the special case of weak system-reservoir couplings, a more detailed description of the steady-state density matrix is obtained. Several paradigm transport setups for interelectrode electron transport and low-dimensional phonon heat flux are elucidated.
Kabir, M. Z.; Imam, Safayat-Al
2013-04-15
A theoretical model for describing bias-dependent transient and steady-state behaviors of dark current in amorphous selenium (a-Se) avalanche detector structures has been developed. The analytical model considers bulk thermal generation current from mid-gap sates, transient carrier depletion, and carrier injection from the electrodes incorporating avalanche multiplication. The proposed physics-based dark current model is compared with the published experimental results on three potential a-Se avalanche detector structures. The steady-state dark current is the minimum for the structures that have effective blocking layers for both holes and electrons. The transient decay time to reach a plateau decreases considerably with increasing electric field.
An analytical solution for the steady-state aerosol size distribution achieved in a steady-state, continuous flow chamber is derived, where particle growth is occurring by gas-to-particle conversion and particle loss is occurring by deposition to the walls of the chamber. The s...
NASA Astrophysics Data System (ADS)
Dubbert, Maren; Kübert, Angelika; Cuntz, Matthias; Werner, Christiane
2015-04-01
Isotope techniques are widely applied in ecosystem studies. For example, isoflux models are used to separate soil evaporation from transpiration in ecosystems. These models often assume that plant transpiration occurs at isotopic steady state, i.e. that the transpired water shows the same isotopic signature as the source water. Yet, several studies found that transpiration did not occur at isotopic steady state, under both controlled and field conditions. Here we focused on identifying the internal and external factors which drive the isotopic signature of leaf transpiration. Using cavity ring-down spectroscopy (CRDS), the effect of both environmental variables and leaf physiological traits on δ18OT was investigated under controlled conditions. Six plant species with distinct leaf physiological traits were exposed to step changes in relative air humidity (RH), their response in δ18OT and gas exchange parameters and their leaf physiological traits were assessed. Moreover, two functionally distinct plant types (tree, i.e. Quercus suber, and grassland) of a semi-arid Mediterranean oak-woodland where observed under natural conditions throughout an entire growth period in the field. The species differed substantially in their leaf physiological traits and their turn-over times of leaf water. They could be grouped in species with fast (<60 min.), intermediate (ca. 120 min.) and slow (>240 min.) turn-over times, mostly due to differences in stomatal conductance, leaf water content or a combination of both. Changes in RH caused an immediate response in δ18OT, which were similarly strong in all species, while leaf physiological traits affected the subsequent response in δ18OT. The turn-over time of leaf water determined the speed of return to the isotopic steady or a stable δ18OT value (Dubbert & Kübert et al., in prep.). Under natural conditions, changes in environmental conditions over the diurnal cycle had a huge impact on the diurnal development of δ18OT in both
Powers, Colin J; Früh, Klaus
2008-10-03
The US2-11 region of human and rhesus cytomegalovirus encodes a conserved family of glycoproteins that inhibit MHC-I assembly with viral peptides, thus preventing cytotoxic T cell recognition. Since HCMV lacking US2-11 is no longer able to block assembly and transport of MHC-I, we examined whether this is also observed for RhCMV lacking the corresponding region. Unexpectedly, recombinant RhCMV lacking US2-11 was still able to inhibit MHC-I expression in infected fibroblasts, suggesting the presence of an additional MHC-I evasion mechanism. Progressive deletion analysis of RhCMV-specific genomic regions revealed that MHC-I expression is fully restored upon additional deletion of rh178. The protein encoded by this RhCMV-specific open reading frame is anchored in the endoplasmic reticulum membrane. In the presence of rh178, RhCMV prevented MHC-I heavy chain (HC) expression, but did not inhibit mRNA transcription or association of HC mRNA with translating ribosomes. Proteasome inhibitors stabilized a HC degradation intermediate in the absence of rh178, but not in its presence, suggesting that rh178 prevents completion of HC translation. This interference was signal sequence-dependent since replacing the signal peptide with that of CD4 or murine HC rendered human HCs resistant to rh178. We have identified an inhibitor of antigen presentation encoded by rhesus cytomegalovirus unique in both its lack of homology to any other known protein and in its mechanism of action. By preventing signal sequence-dependent HC translocation, rh178 acts prior to US2, US3 and US11 which attack MHC-I proteins after protein synthesis is completed. Rh178 is the first viral protein known to interfere at this step of the MHC-I pathway, thus taking advantage of the conserved nature of HC leader peptides, and represents a new mechanism of translational interference.
Non-steady-state transport of superthermal electrons in the plasmasphere
NASA Technical Reports Server (NTRS)
Khazanov, George V.; Liemohn, Michael W.; Gombosi, Tamas I.; Nagy, Andrew F.
1993-01-01
Numerical solutions to the time-dependent kinetic equation, which describes the transport of superthermal electrons in the splasmasphere between the two conjugate ionospheres, are presented. The model calculates the distribution function as a function of time, field-aligned distance, energy, and pitch-angle. The processes of refilling, depleting, and establishing steady-state conditions of superthermal electrons in the plasmasphere are discussed.
Chirality, causality, and fluctuation-dissipation theorems in nonequilibrium steady states.
Wang, Chenjie; Feldman, D E
2013-01-18
Edges of some quantum Hall liquids and a number of other systems exhibit chiral transport: excitations can propagate in one direction only, e.g., clockwise. We derive a family of fluctuation-dissipation relations in nonequilibrium steady states of such chiral systems. The theorems connect nonlinear response with fluctuations far from thermal equilibrium and hold only in case of chiral transport. They can be used to test the chiral or nonchiral character of the system.
Restitution slope is principally determined by steady-state action potential duration.
Shattock, Michael J; Park, Kyung Chan; Yang, Hsiang-Yu; Lee, Angela Wc; Niederer, Steve; MacLeod, Kenneth T; Winter, James
2017-03-23
AimsThe steepness of the action potential duration (APD) restitution curve and local tissue refractoriness are both thought to play important roles in arrhythmogenesis. Despite this, there has been little recognition of the apparent association between steady-state APD and the slope of the restitution curve. The objective of this study was to test the hypothesis that restitution slope is determined by APD and to examine the relationship between restitution slope, refractoriness and susceptibility to VF.Methods and ResultsExperiments were conducted in isolated hearts and ventricular myocytes from adult guinea pigs and rabbits. Restitution curves were measured under control conditions and following intervention to prolong (clofilium, veratridine, bretylium, low [Ca]e, chronic transverse aortic constriction) or shorten (catecholamines, rapid pacing) ventricular APD. Despite markedly differing mechanisms of action, all interventions that prolonged the action potential led to a steepening of the restitution curve (and vice versa). Normalising the restitution curve as a % of steady-state APD abolished the difference in restitution curves by all interventions. Altered restitution dynamics were preserved when APD was modulated by current injection in myocytes pre-treated with the calcium chelator BAPTA-AM, to abolish the intracellular calcium transient. The non-linear relation between APD and the rate of repolarization of the action potential is shown to underpin the common influence of APD on the slope of the restitution curve. Susceptibility to VF was found to parallel changes in APD/refractoriness, rather than restitution slope.Conclusion(s)Steady-state APD is the principal determinant of the slope of the ventricular electrical restitution curve. In the absence of post-repolarization refractoriness, factors that prolong the action potential would be expected to steepen the restitution curve. However, concomitant changes in tissue refractoriness act to reduce
Pilyugina, Svetlana A; Fischbein, Nancy J; Liao, Y Joyce; McCulley, Timothy J
2007-06-01
An otherwise healthy 12-month-old girl presented for evaluation of reduced abduction of the left eye detected at 6 months of age. The remainder of the examination was unremarkable. A special MRI sequence-fast imaging employing steady-state acquisition (FIESTA)-visualized the right but not the left sixth nerve cisternal segment. This is the first reported use of the MRI FIESTA sequence to diagnose aplasia of the sixth cranial nerve.
Steady-state and dynamic models of unified power flow controller (UPFC) for power system studies
Nabavi-Niaki, A.; Iravani, M.R.
1996-11-01
This paper provides comprehensive development procedures and final forms of mathematical models of unified power flow controller (UPFC) for steady-state, transient stability and eigenvalue studies. Based on the developed models, the impacts of control strategy, parameters and location of UPFC on power system operating conditions are discussed. The accuracy of the developed models is verified through comparing the study results with those obtained from detailed time-domain simulation using the Electromagnetic Transients Program (EMTP).
GENERAL: Steady State Entanglement and Saturation Effects in Correlated Spontaneous Emission Lasers
NASA Astrophysics Data System (ADS)
Wang, Fei; Hu, Xiang-Ming; Shi, Wen-Xing
2009-08-01
It has recently been shown that correlated spontaneous emission lasers (CEL) exhibit transient entanglement in the linear regime. Here we re-examine the quantum correlations in two-photon CEL and explore the saturation effects on continuous variable entanglement. It is shown that the steady state entanglement is obtainable in the weak or moderate saturation regime, while is washed out in the deep saturation regime.
Cooperative Effects in Models of Steady-State Transport across Membranes
Hill, Terrell L.; Chen, Yi-Der
1971-01-01
Several different one-site, two-site, and multisite models of steady-state ion transport across a membrane are investigated. The basic features, including cooperative interactions between channels, are the same as in earlier papers in this series. In particular, the present paper represents a considerable elaboration of part III. The models might apply to artificial or possibly to biological membranes, but particular applications must await further elucidation of the molecular structure and operation of these membranes. PMID:5132496
Agarwalla, Bijay Kumar; Li, Baowen; Wang, Jian-Sheng
2012-05-01
We study the statistics of heat transferred in a given time interval t_{M}, through a finite harmonic chain, called the center, which is connected to two heat baths, the left (L) and the right (R), that are maintained at two temperatures. The center atoms are driven by external time-dependent forces. We calculate the cumulant generating function (CGF) for the heat transferred out of the left lead, Q_{L}, based on the two-time quantum measurement concept and using the nonequilibrium Green's function method. The CGF can be concisely expressed in terms of Green's functions of the center and an argument-shifted self-energy of the lead. The expression of the CGF is valid in both transient and steady-state regimes. We consider three initial conditions for the density operator and show numerically, for a one-atom junction, how their transient behaviors differ from each other but, finally, approach the same steady state, independent of the initial distributions. We also derive the CGF for the joint probability distribution P(Q_{L},Q_{R}), and discuss the correlations between Q_{L} and Q_{R}. We calculate the CGF for total entropy production in the reservoirs. In the steady state we explicitly show that the CGFs obey steady-state fluctuation theorems. We obtain classical results by taking ℏ→0. We also apply our method to the counting of the electron number and electron energy, for which the associated self-energy is obtained from the usual lead self-energy by multiplying a phase and shifting the contour time, respectively.
Infinite product expansion of the Fokker–Planck equation with steady-state solution
Martin, R. J.; Craster, R. V.; Kearney, M. J.
2015-01-01
We present an analytical technique for solving Fokker–Planck equations that have a steady-state solution by representing the solution as an infinite product rather than, as usual, an infinite sum. This method has many advantages: automatically ensuring positivity of the resulting approximation, and by design exactly matching both the short- and long-term behaviour. The efficacy of the technique is demonstrated via comparisons with computations of typical examples. PMID:26346100
Crank inertial load has little effect on steady-state pedaling coordination.
Fregly, B J; Zajac, F E; Dairaghi, C A
1996-12-01
Inertial load can affect the control of a dynamic system whenever parts of the system are accelerated or decelerated. During steady-state pedaling, because within-cycle variations in crank angular acceleration still exist, the amount of crank inertia present (which varies widely with road-riding gear ratio) may affect the within-cycle coordination of muscles. However, the effect of inertial load on steady-state pedaling coordination is almost always assumed to be negligible, since the net mechanical energy per cycle developed by muscles only depends on the constant cadence and workload. This study test the hypothesis that under steady-state conditions, the net joint torques produced by muscles at the hip, knee, and ankle are unaffected by crank inertial load. To perform the investigation, we constructed a pedaling apparatus which could emulate the low inertial load of a standard ergometer or the high inertial load of a road bicycle in high gear. Crank angle and bilateral pedal force and angle data were collected from ten subjects instructed to pedal steadily (i.e., constant speed across cycles) and smoothly (i.e., constant speed within a cycle) against both inertias at a constant workload. Virtually no statistically significant changes were found in the net hip and knee muscle joint torques calculated from an inverse dynamics analysis. Though the net ankle muscle joint torque, as well as the one- and two-legged crank torque, showed statistically significant increases at the higher inertia, the changes were small. In contrast, large statistically significant reductions were found in crank kinematic variability both within a cycle and between cycles (i.e., cadence), primarily because a larger inertial load means a slower crank dynamic response. Nonetheless, the reduction in cadence variability was somewhat attenuated by a large statistically significant increase in one-legged crank torque variability. We suggest, therefore, that muscle coordination during steady-state
Estimating equations for biomarker based exposure estimation under non-steady-state conditions.
Bartell, Scott M; Johnson, Wesley O
2011-06-13
Unrealistic steady-state assumptions are often used to estimate toxicant exposure rates from biomarkers. A biomarker may instead be modeled as a weighted sum of historical time-varying exposures. Estimating equations are derived for a zero-inflated gamma distribution for daily exposures with a known exposure frequency. Simulation studies suggest that the estimating equations can provide accurate estimates of exposure magnitude at any reasonable sample size, and reasonable estimates of the exposure variance at larger sample sizes.
Alarcón, Tomás
2014-05-14
In this paper, we propose two methods to carry out the quasi-steady state approximation in stochastic models of enzyme catalytic regulation, based on WKB asymptotics of the chemical master equation or of the corresponding partial differential equation for the generating function. The first of the methods we propose involves the development of multiscale generalisation of a WKB approximation of the solution of the master equation, where the separation of time scales is made explicit which allows us to apply the quasi-steady state approximation in a straightforward manner. To the lowest order, the multi-scale WKB method provides a quasi-steady state, Gaussian approximation of the probability distribution. The second method is based on the Hamilton-Jacobi representation of the stochastic process where, as predicted by large deviation theory, the solution of the partial differential equation for the corresponding characteristic function is given in terms of an effective action functional. The optimal transition paths between two states are then given by those paths that maximise the effective action. Such paths are the solutions of the Hamilton equations for the Hamiltonian associated to the effective action functional. The quasi-steady state approximation is applied to the Hamilton equations thus providing an approximation to the optimal transition paths and the transition time between two states. Using this approximation we predict that, unlike the mean-field quasi-steady approximation result, the rate of enzyme catalysis depends explicitly on the initial number of enzyme molecules. The accuracy and validity of our approximated results as well as that of our predictions regarding the behaviour of the stochastic enzyme catalytic models are verified by direct simulation of the stochastic model using Gillespie stochastic simulation algorithm.
Alarcón, Tomás
2014-05-14
In this paper, we propose two methods to carry out the quasi-steady state approximation in stochastic models of enzyme catalytic regulation, based on WKB asymptotics of the chemical master equation or of the corresponding partial differential equation for the generating function. The first of the methods we propose involves the development of multiscale generalisation of a WKB approximation of the solution of the master equation, where the separation of time scales is made explicit which allows us to apply the quasi-steady state approximation in a straightforward manner. To the lowest order, the multi-scale WKB method provides a quasi-steady state, Gaussian approximation of the probability distribution. The second method is based on the Hamilton-Jacobi representation of the stochastic process where, as predicted by large deviation theory, the solution of the partial differential equation for the corresponding characteristic function is given in terms of an effective action functional. The optimal transition paths between two states are then given by those paths that maximise the effective action. Such paths are the solutions of the Hamilton equations for the Hamiltonian associated to the effective action functional. The quasi-steady state approximation is applied to the Hamilton equations thus providing an approximation to the optimal transition paths and the transition time between two states. Using this approximation we predict that, unlike the mean-field quasi-steady approximation result, the rate of enzyme catalysis depends explicitly on the initial number of enzyme molecules. The accuracy and validity of our approximated results as well as that of our predictions regarding the behaviour of the stochastic enzyme catalytic models are verified by direct simulation of the stochastic model using Gillespie stochastic simulation algorithm.
Tromberg, Bruce J.; Berger, Andrew J.; Cerussi, Albert E.; Bevilacqua, Frederic; Jakubowski, Dorota
2008-09-23
A technique for measuring broadband near-infrared absorption spectra of turbid media that uses a combination of frequency-domain and steady-state reflectance methods. Most of the wavelength coverage is provided by a white-light steady-state measurement, whereas the frequency-domain data are acquired at a few selected wavelengths. Coefficients of absorption and reduced scattering derived from the frequency-domain data are used to calibrate the intensity of the steady-state measurements and to determine the reduced scattering coefficient at all wavelengths in the spectral window of interest. The absorption coefficient spectrum is determined by comparing the steady-state reflectance values with the predictions of diffusion theory, wavelength by wavelength. Absorption spectra of a turbid phantom and of human breast tissue in vivo, derived with the combined frequency-domain and steady-state technique, agree well with expected reference values.
Analytical comparison of transient and steady state visual evoked cortical potentials
NASA Technical Reports Server (NTRS)
Junker, A. M.; Kenner, K. M.; Kleinman, D. L.; Mcclurg, T. D.
1986-01-01
To better describe the linear-dynamic properties of the human visual-cortical response system, transient and steady state Visual Evoked Response Potentials (VERP) were observed. The stimulus presentation device provided both the evoking stimulus (flickering or pulsing lights) and a video task display. The steady state stimulus was modulated by a complex, ten frequency, sum-of-sines, wave. The transient VERP was the time-locked average of the EEG to a series of narrow light pulses (pulse width of 10 msec). The Fourier transform of the averaged pulses had properties that approximate band limited white noise, i.e., a flat spectrum over the frequency region spanned by the 10 summed sines. The Fourier transform of both the steady state and the transient evoked potentials resulted in transfer that are equivalent and therefore comparable. To investigate the effects of task loading on evoked potentials, a grammatical reasoning task was provided. Results support the relevancy of continued application of a systems engineering approach for describing neurosensory functioning.
Steady-state bumpless transfer under controller uncertainty using the state/output feedback topology
Zheng, K.; Lee, A.H.; Bentsman, J.; Taft, C.W.
2006-01-15
Linear quadratic (LQ) bumpless transfer design introduced recently by Turner and Walker gives a very convenient and straightforward computational procedure for the steady-state bumpless transfer operator synthesis. It is, however, found to be incapable of providing convergence of the output of the offline controller to that of the online controller in several industrial applications, producing bumps in the plant output in the wake of controller transfer. An examination of this phenomenon reveals that the applications in question are characterized by a significant mismatch, further referred to as controller uncertainty, between the dynamics of the implemented controllers and their models used in the transfer operator computation. To address this problem, while retaining the convenience of the Turner and Walker design, a novel state/output feedback bumpless transfer topology is introduced that employs the nominal state of the offline controller and, through the use of an additional controller/model mismatch compensator, also the offline controller output. A corresponding steady-state bumpless transfer design procedure along with the supporting theory is developed for a large class of systems. Due to these features, it is demonstrated to solve a long-standing problem of high-quality steady-state bumpless transfer from the industry standard low-order nonlinear multiloop PID-based controllers to the modern multiinput-multioutput (MIMO) robust controllers in the megawatt/throttle pressure control of a typical coal-fired boiler/turbine unit.
Steady states of solar coronal loops as nonaxisymmetric toroidal flux ropes
NASA Astrophysics Data System (ADS)
Sugiyama, Linda; Asgari-Targhi, M.
2016-10-01
Consistent MHD steady states for coronal loops on the surface of the sun, modeled as magnetic flux ropes, are derived for the first time, based on the equilibrium and stability of toroidal magnetically confined fusion plasmas. Coronal loops, like magnetic tori, are unstable to expansion in major radius. The solar gravity and plasma beta, previously ignored, are crucual parameters in the steady state. For loops with a predominantly axisymmetric magnetic axis, three analytical steady states exist in terms of beta and the normalized solar gravity parameter Ĝ = ga /vA2 , where g is the acceleration due to gravity, ordered in inverse aspect ratio: high beta (β ɛ) and small gravity Ĝ ɛ3 , which resembles a nearly axisymmetric high-beta tokamak, and high beta with larger Ĝ ɛ2 , and low beta (β ɛ2) with Ĝ ɛ3 , which are more strongly nonaxisymmetric. Comparison with observations shows that the two high beta states bracket the range of thin coronal loops in solar active regions ɛ 0.02 and Ĝ orders the loops by height. The low beta solution may describe certain thicker loops ɛ 0.1 that grow to solar flares or Coronal Mass Ejections. Work partially supported by the U.S. DOE OFES under Award DE-SC-0007883.
A Series RCL Circuit Theory for Analyzing Non-Steady-State Water Uptake of Maize Plants
NASA Astrophysics Data System (ADS)
Zhuang, Jie; Yu, Gui-Rui; Nakayama, Keiichi
2014-10-01
Understanding water uptake and transport through the soil-plant continuum is vital for ecosystem management and agricultural water use. Plant water uptake under natural conditions is a non-steady transient flow controlled by root distribution, plant configuration, soil hydraulics, and climatic conditions. Despite significant progress in model development, a mechanistic description of transient water uptake has not been developed or remains incomplete. Here, based on advanced electrical network theory (RLC circuit theory), we developed a non-steady state biophysical model to mechanistically analyze the fluctuations of uptake rates in response to water stress. We found that the non-steady-state model captures the nature of instantaneity and hysteresis of plant water uptake due to the considerations of water storage in plant xylem and coarse roots (capacitance effect), hydraulic architecture of leaf system (inductance effect), and soil-root contact (fuse effect). The model provides insights into the important role of plant configuration and hydraulic heterogeneity in helping plants survive an adverse environment. Our tests against field data suggest that the non-steady-state model has great potential for being used to interpret the smart water strategy of plants, which is intrinsically determined by stem size, leaf size/thickness and distribution, root system architecture, and the ratio of fine-to-coarse root lengths.
A waved journal bearing concept with improved steady-state and dynamic performance
NASA Technical Reports Server (NTRS)
Dimofte, Florin
1994-01-01
Analysis of the waved journal bearing concept featuring a waved inner bearing diameter for use with a compressible lubricant (gas) is presented. A three wave, waved journal bearing geometry is used to show the geometry of this concept. The performance of generic waved bearings having either three, four, six, or eight waves is predicted for air lubricated bearings. Steady-state performance is discussed in terms of bearing load capacity, while the dynamic performance is discussed in terms of dynamic coefficients and fluid film stability. It was found that the bearing wave amplitude has an important influence on both steady-state and dynamic performance of the waved journal bearing. For a fixed eccentricity ratio, the bearing steady-state load capacity and direct dynamic stiffness coefficient increase as the wave amplitude increases. Also, the waved bearing becomes more stable as the wave amplitude increases. In addition, increasing the number of waves reduces the waved bearing's sensitivity to the direction of the applied load relative to the wave. However, the range in which the bearing performance can be varied decreases as the number of waves increases. Therefore, both the number and the amplitude of the waves must be properly selected to optimize the waved bearing design for a specific application. It is concluded that the stiffness of an air bearing, due to the hydrodynamic effect, could be doubled and made to run stably by using a six or eight wave geometry with a wave amplitude approximately half of the bearing radial clearance.
A Series RCL Circuit Theory for Analyzing Non-Steady-State Water Uptake of Maize Plants
Zhuang, Jie; Yu, Gui-Rui; Nakayama, Keiichi
2014-01-01
Understanding water uptake and transport through the soil-plant continuum is vital for ecosystem management and agricultural water use. Plant water uptake under natural conditions is a non-steady transient flow controlled by root distribution, plant configuration, soil hydraulics, and climatic conditions. Despite significant progress in model development, a mechanistic description of transient water uptake has not been developed or remains incomplete. Here, based on advanced electrical network theory (RLC circuit theory), we developed a non-steady state biophysical model to mechanistically analyze the fluctuations of uptake rates in response to water stress. We found that the non-steady-state model captures the nature of instantaneity and hysteresis of plant water uptake due to the considerations of water storage in plant xylem and coarse roots (capacitance effect), hydraulic architecture of leaf system (inductance effect), and soil-root contact (fuse effect). The model provides insights into the important role of plant configuration and hydraulic heterogeneity in helping plants survive an adverse environment. Our tests against field data suggest that the non-steady-state model has great potential for being used to interpret the smart water strategy of plants, which is intrinsically determined by stem size, leaf size/thickness and distribution, root system architecture, and the ratio of fine-to-coarse root lengths. PMID:25335512
A series RCL circuit theory for analyzing non-steady-state water uptake of maize plants.
Zhuang, Jie; Yu, Gui-Rui; Nakayama, Keiichi
2014-10-22
Understanding water uptake and transport through the soil-plant continuum is vital for ecosystem management and agricultural water use. Plant water uptake under natural conditions is a non-steady transient flow controlled by root distribution, plant configuration, soil hydraulics, and climatic conditions. Despite significant progress in model development, a mechanistic description of transient water uptake has not been developed or remains incomplete. Here, based on advanced electrical network theory (RLC circuit theory), we developed a non-steady state biophysical model to mechanistically analyze the fluctuations of uptake rates in response to water stress. We found that the non-steady-state model captures the nature of instantaneity and hysteresis of plant water uptake due to the considerations of water storage in plant xylem and coarse roots (capacitance effect), hydraulic architecture of leaf system (inductance effect), and soil-root contact (fuse effect). The model provides insights into the important role of plant configuration and hydraulic heterogeneity in helping plants survive an adverse environment. Our tests against field data suggest that the non-steady-state model has great potential for being used to interpret the smart water strategy of plants, which is intrinsically determined by stem size, leaf size/thickness and distribution, root system architecture, and the ratio of fine-to-coarse root lengths.
NASA Astrophysics Data System (ADS)
McLaren, Robert; Wojtal, Patryk
2013-04-01
Nitrous acid (HONO) is an important radical precursor in the troposphere. Recent consensus suggests that HONO is formed in the dark through the heterogeneous hydrolysis of NO2 on surfaces (2 NO2 + H2O -> HONO + HNO3), largely dominated by hydrolysis on ground surfaces and a smaller contribution from aerosol surfaces. Frequently a steady state of HONO is observed (dHONO/dt ~ 0) at night, which has been ascribed to a balance between heterogeneous formation and dry deposition. The fate of the surface deposited HONO remains an open question with the possibilities including the permanent loss of N(III), accumulation of surface reservoirs of N(III) at night, and/or a full dynamic equilibrium that partitions HONO between the atmosphere and water on the surface. Surface reservoirs of N(III) accumulated at night could act as a source of HONO the next day. Here we report measurements of HONO by DOAS in Toronto for a 1-year period. Of interest is the frequently observed phenomena of a fast approach to a steady state at sunset with rates of increase of d[HONO]/dt = 1.4 ppb/hr (with snow cover) and long periods in which the mixing ratio of HONO is constant with a median level of ~ 1.1 ppb. We discuss these observations in the context of the steady state being attributable to a dynamic equilibrium state.
Shim, Jaesool; Yoo, Kisoo; Dutta, Prashanta
2017-03-01
The determination of an analytical solution to find the steady-state protein concentration distribution in IEF is very challenging due to the nonlinear coupling between mass and charge conservation equations. In this study, approximate analytical solutions are obtained for steady-state protein distribution in carrier ampholyte based IEF. Similar to the work of Svensson, the final concentration profile for proteins is assumed to be Gaussian, but appropriate expressions are presented in order to obtain the effective electric field and pH gradient in the focused protein band region. Analytical results are found from iterative solutions of a system of coupled algebraic equations using only several iterations for IEF separation of three plasma proteins: albumin, cardiac troponin I, and hemoglobin. The analytical results are compared with numerically predicted results for IEF, showing excellent agreement. Analytically obtained electric field and ionic conductivity distributions show significant deviation from their nominal values, which is essential in finding the protein focusing behavior at isoelectric points. These analytical solutions can be used to determine steady-state protein concentration distribution for experiment design of IEF considering any number of proteins and ampholytes. Moreover, the model presented herein can be used to find the conductivity, electric field, and pH field.
Exploration of trade-offs between steady-state and dynamic properties in signaling cycles
NASA Astrophysics Data System (ADS)
Radivojevic, A.; Chachuat, B.; Bonvin, D.; Hatzimanikatis, V.
2012-08-01
In the intracellular signaling networks that regulate important cell processes, the base pattern comprises the cycle of reversible phosphorylation of a protein, catalyzed by kinases and opposing phosphatases. Mathematical modeling and analysis have been used for gaining a better understanding of their functions and to capture the rules governing system behavior. Since biochemical parameters in signaling pathways are not easily accessible experimentally, it is necessary to explore possibilities for both steady-state and dynamic responses in these systems. While a number of studies have focused on analyzing these properties separately, it is necessary to take into account both of these responses simultaneously in order to be able to interpret a broader range of phenotypes. This paper investigates the trade-offs between optimal characteristics of both steady-state and dynamic responses. Following an inverse sensitivity analysis approach, we use systematic optimization methods to find the biochemical and biophysical parameters that simultaneously achieve optimal steady-state and dynamic performance. Remarkably, we find that even a single covalent modification cycle can simultaneously and robustly achieve high ultrasensitivity, high amplification and rapid signal transduction. We also find that the response rise and decay times can be modulated independently by varying the activating- and deactivating-enzyme-to-interconvertible-protein ratios.
A steady-state Kalman filter for assimilating data from a single polar orbiting satellite
NASA Technical Reports Server (NTRS)
Banfield, Don; Ingersoll, Andrew P.; Keppenne, Christian L.
1995-01-01
A steady-state scheme for data assimilation in the context of a single, short period (relative to a day), sun-synchronous, polar-orbiting satellite is examined. If the satellite takes observations continuously, the gains, which are the weights for blending observations and predictions together, are steady in time. For a linear system forced by random noise, the optimal steady-state gains (Wiener gains) are equivalent to those of a Kalman filter. Computing the Kalman gains increases the computational cost of the model by a large factor, but computing the Wiener gains does not. The latter are computed by iteration using prior estimates of the gains to assimilate simulated observations of one run of the model, termed 'truth' into another run termed 'prediction'. At each stage, the prediction errors form the basis for the next estimate of the gains. Steady state is achieved after three or four iterations. Further simplification is achieved by making the gains depend on longitudinal distance from the observation point, not on absolute longitude. For a single-layer primitive equation model, the scheme works well even if only the mass field is observed but not the velocity field. Although the scheme was developed for Mars Observer, it should be applicable to data retrieved from Earth atmosphere satellites, for example, UARS.
Effects of aging in catastrophe on the steady state and dynamics of a microtubule population
NASA Astrophysics Data System (ADS)
Jemseena, V.; Gopalakrishnan, Manoj
2015-05-01
Several independent observations have suggested that the catastrophe transition in microtubules is not a first-order process, as is usually assumed. Recent in vitro observations by Gardner et al. [M. K. Gardner et al., Cell 147, 1092 (2011), 10.1016/j.cell.2011.10.037] showed that microtubule catastrophe takes place via multiple steps and the frequency increases with the age of the filament. Here we investigate, via numerical simulations and mathematical calculations, some of the consequences of the age dependence of catastrophe on the dynamics of microtubules as a function of the aging rate, for two different models of aging: exponential growth, but saturating asymptotically, and purely linear growth. The boundary demarcating the steady-state and non-steady-state regimes in the dynamics is derived analytically in both cases. Numerical simulations, supported by analytical calculations in the linear model, show that aging leads to nonexponential length distributions in steady state. More importantly, oscillations ensue in microtubule length and velocity. The regularity of oscillations, as characterized by the negative dip in the autocorrelation function, is reduced by increasing the frequency of rescue events. Our study shows that the age dependence of catastrophe could function as an intrinsic mechanism to generate oscillatory dynamics in a microtubule population, distinct from hitherto identified ones.
Ion-selective supported liquid membranes placed under steady-state diffusion control.
Tompa, Károly; Birbaum, Karin; Malon, Adam; Vigassy, Tamás; Bakker, Eric; Pretsch, Ernö
2005-12-01
Supported liquid membranes are used here to establish steady-state concentration profiles across ion-selective membranes rapidly and reproducibly. This opens up new avenues in the area of nonequilibrium potentiometry, where reproducible accumulation and depletion processes at ion-selective membranes may be used to gain valuable analytical information about the sample. Until today, drifting signals originating from a slowly developing concentration profile across the ion-selective membrane made such approaches impractical in zero current potentiometry. Here, calcium- and silver-selective membranes were placed between two identical aqueous electrolyte solutions, and the open circuit potential was monitored upon changing the composition of one solution. Steady state was reached in approximately 1 min with 25-microm porous polypropylene membranes filled with bis(2-ethylhexyl) sebacate doped with ionophore and lipophilic ion exchanger. Ion transport across the membrane resulted on the basis of nonsymmetric ion-exchange processes at both membrane sides. The steady-state potential was calculated as the sum of the two membrane phase boundary potentials, and good correspondence to experiment was observed. Concentration polarizations in the contacting aqueous phases were confirmed with stirring experiments. It was found that interferences (barium in the case of calcium electrodes and potassium with silver electrodes) induce a larger potential change than expected with the Nicolsky equation because they influence the level of polarization of the primary ion (calcium or silver) that remains potential determining.
Steady-state propagation speed of rupture fronts along one-dimensional frictional interfaces
NASA Astrophysics Data System (ADS)
Amundsen, David Skâlid; Trømborg, Jørgen Kjoshagen; Thøgersen, Kjetil; Katzav, Eytan; Malthe-Sørenssen, Anders; Scheibert, Julien
2015-09-01
The rupture of dry frictional interfaces occurs through the propagation of fronts breaking the contacts at the interface. Recent experiments have shown that the velocities of these rupture fronts range from quasistatic velocities proportional to the external loading rate to velocities larger than the shear wave speed. The way system parameters influence front speed is still poorly understood. Here we study steady-state rupture propagation in a one-dimensional (1D) spring-block model of an extended frictional interface for various friction laws. With the classical Amontons-Coulomb friction law, we derive a closed-form expression for the steady-state rupture velocity as a function of the interfacial shear stress just prior to rupture. We then consider an additional shear stiffness of the interface and show that the softer the interface, the slower the rupture fronts. We provide an approximate closed form expression for this effect. We finally show that adding a bulk viscosity on the relative motion of blocks accelerates steady-state rupture fronts and we give an approximate expression for this effect. We demonstrate that the 1D results are qualitatively valid in 2D. Our results provide insights into the qualitative role of various key parameters of a frictional interface on its rupture dynamics. They will be useful to better understand the many systems in which spring-block models have proved adequate, from friction to granular matter and earthquake dynamics.
NASA Astrophysics Data System (ADS)
Hu, J. S.; Sun, Z.; Guo, H. Y.; Li, J. G.; Wan, B. N.; Wang, H. Q.; Ding, S. Y.; Xu, G. S.; Liang, Y. F.; Mansfield, D. K.; Maingi, R.; Zou, X. L.; Wang, L.; Ren, J.; Zuo, G. Z.; Zhang, L.; Duan, Y. M.; Shi, T. H.; Hu, L. Q.; East Team
2015-02-01
A critical challenge facing the basic long-pulse high-confinement operation scenario (H mode) for ITER is to control a magnetohydrodynamic (MHD) instability, known as the edge localized mode (ELM), which leads to cyclical high peak heat and particle fluxes at the plasma facing components. A breakthrough is made in the Experimental Advanced Superconducting Tokamak in achieving a new steady-state H mode without the presence of ELMs for a duration exceeding hundreds of energy confinement times, by using a novel technique of continuous real-time injection of a lithium (Li) aerosol into the edge plasma. The steady-state ELM-free H mode is accompanied by a strong edge coherent MHD mode (ECM) at a frequency of 35-40 kHz with a poloidal wavelength of 10.2 cm in the ion diamagnetic drift direction, providing continuous heat and particle exhaust, thus preventing the transient heat deposition on plasma facing components and impurity accumulation in the confined plasma. It is truly remarkable that Li injection appears to promote the growth of the ECM, owing to the increase in Li concentration and hence collisionality at the edge, as predicted by GYRO simulations. This new steady-state ELM-free H -mode regime, enabled by real-time Li injection, may open a new avenue for next-step fusion development.
On the Kaolinite Floc Size at the Steady State of Flocculation in a Turbulent Flow
Zhu, Zhongfan; Wang, Hongrui; Yu, Jingshan; Dou, Jie
2016-01-01
The flocculation of cohesive fine-grained sediment plays an important role in the transport characteristics of pollutants and nutrients absorbed on the surface of sediment in estuarine and coastal waters through the complex processes of sediment transport, deposition, resuspension and consolidation. Many laboratory experiments have been carried out to investigate the influence of different flow shear conditions on the floc size at the steady state of flocculation in the shear flow. Most of these experiments reported that the floc size decreases with increasing shear stresses and used a power law to express this dependence. In this study, we performed a Couette-flow experiment to measure the size of the kaolinite floc through sampling observation and an image analysis system at the steady state of flocculation under six flow shear conditions. The results show that the negative correlation of the floc size on the flow shear occurs only at high shear conditions, whereas at low shear conditions, the floc size increases with increasing turbulent shear stresses regardless of electrolyte conditions. Increasing electrolyte conditions and the initial particle concentration could lead to a larger steady-state floc size. PMID:26901652
Amri, Amina; Pulko, Susan Helen; Wilkinson, Anthony James
2016-01-01
Breast thermography still has inherent limitations that prevent it from being fully accepted as a breast screening modality in medicine. The main challenges of breast thermography are to reduce false positive results and to increase the sensitivity of a thermogram. Further, it is still difficult to obtain information about tumour parameters such as metabolic heat, tumour depth and diameter from a thermogram. However, infrared technology and image processing have advanced significantly and recent clinical studies have shown increased sensitivity of thermography in cancer diagnosis. The aim of this paper is to study numerically the possibilities of extracting information about the tumour depth from steady state thermography and transient thermography after cold stress with no need to use any specific inversion technique. Both methods are based on the numerical solution of Pennes bioheat equation for a simple three-dimensional breast model. The effectiveness of two approaches used for depth detection from steady state thermography is assessed. The effect of breast density on the steady state thermal contrast has also been studied. The use of a cold stress test and the recording of transient contrasts during rewarming were found to be potentially suitable for tumour depth detection during the rewarming process. Sensitivity to parameters such as cold stress temperature and cooling time is investigated using the numerical model and simulation results reveal two prominent depth-related characteristic times which do not strongly depend on the temperature of the cold stress or on the cooling period.
Dougherty, T.; Maciuca, C.; McAssey, E.V. Jr.; Reddy, D.G.; Yang, B.W.
1991-07-01
This report presents results for the steady state portion of the finless single annulus test program. The objective of the experimental study was to investigate the onset of flow instability in an annular geometry similar to the MARK 22 reactor. The test program involved testing of both a finless or ribless heater and a ribbed heater. The latter program is currently underway and will be reported separately. For finless heater, testing was conducted in both a steady state and transient mode. The present report presents steady state results for a series of experiments with uniform and asymmetric heating. The demand curves obtained under uniform heating yielded OFI flow-rates which were slightly below those obtained for a circular tube geometry with the same L/D ratio; however, the single annulus had a hydraulic diameter which was approximately fifty percent larger than the circular tube. The asymmetric heating cases were selected to provide the same average power input as the uniform cases. The results for these tests indicated that the flow-rate at OFI increased with the degree of asymmetry.
A steady-state non-equilibrium molecular dynamics approach for the study of evaporation processes
NASA Astrophysics Data System (ADS)
Zhang, Jianguo; Müller-Plathe, Florian; Yahia-Ouahmed, Méziane; Leroy, Frédéric
2013-10-01
Two non-equilibrium methods (called bubble method and splitting method, respectively) have been developed and tested to study the steady state evaporation of a droplet surrounded by its vapor, where the evaporation continuously occurs at the vapor-liquid interface while the droplet size remains constant. In the bubble method, gas molecules are continuously reinserted into a free volume (represented by a bubble) located at the centre of mass of the droplet to keep the droplet size constant. In the splitting method, a molecule close to the centre of mass of the droplet is split into two: In this way, the droplet size is also maintained during the evaporation. By additional local thermostats confined to the area of insertion, the effect of frequent insertions on properties such as density and temperature can be limited to the immediate insertion area. Perturbations are not observed in other parts of the droplet. In the end, both the bubble method and the splitting method achieve steady-state droplet evaporation. Although these methods have been developed using an isolated droplet, we anticipate that they will find a wide range of applications in the study of the evaporation of isolated films and droplets or thin films on heated substrates or under confinement. They can in principle also be used to study the steady-state of other physical processes, such as the diffusion or permeation of gas molecules or ions in a pressure gradient or a concentration gradient.
The orbital PDF: general inference of the gravitational potential from steady-state tracers
NASA Astrophysics Data System (ADS)
Han, Jiaxin; Wang, Wenting; Cole, Shaun; Frenk, Carlos S.
2016-02-01
We develop two general methods to infer the gravitational potential of a system using steady-state tracers, i.e. tracers with a time-independent phase-space distribution. Combined with the phase-space continuity equation, the time independence implies a universal orbital probability density function (oPDF) dP(λ|orbit) ∝ dt, where λ is the coordinate of the particle along the orbit. The oPDF is equivalent to Jeans theorem, and is the key physical ingredient behind most dynamical modelling of steady-state tracers. In the case of a spherical potential, we develop a likelihood estimator that fits analytical potentials to the system and a non-parametric method (`phase-mark') that reconstructs the potential profile, both assuming only the oPDF. The methods involve no extra assumptions about the tracer distribution function and can be applied to tracers with any arbitrary distribution of orbits, with possible extension to non-spherical potentials. The methods are tested on Monte Carlo samples of steady-state tracers in dark matter haloes to show that they are unbiased as well as efficient. A fully documented C/PYTHON code implementing our method is freely available at a GitHub repository linked from http://icc.dur.ac.uk/data/#oPDF.
Haaland, Ben; Min, Wanli; Qian, Peter Z. G.; Amemiya, Yasuo
2011-01-01
Temperature control for a large data center is both important and expensive. On the one hand, many of the components produce a great deal of heat, and on the other hand, many of the components require temperatures below a fairly low threshold for reliable operation. A statistical framework is proposed within which the behavior of a large cooling system can be modeled and forecast under both steady state and perturbations. This framework is based upon an extension of multivariate Gaussian autoregressive hidden Markov models (HMMs). The estimated parameters of the fitted model provide useful summaries of the overall behavior of and relationships within the cooling system. Predictions under system perturbations are useful for assessing potential changes and improvements to be made to the system. Many data centers have far more cooling capacity than necessary under sensible circumstances, thus resulting in energy inefficiencies. Using this model, predictions for system behavior after a particular component of the cooling system is shut down or reduced in cooling power can be generated. Steady-state predictions are also useful for facility monitors. System traces outside control boundaries flag a change in behavior to examine. The proposed model is fit to data from a group of air conditioners within an enterprise data center from the IT industry. The fitted model is examined, and a particular unit is found to be underutilized. Predictions generated for the system under the removal of that unit appear very reasonable. Steady-state system behavior also is predicted well. PMID:22076026
A theoretical analysis of steady-state photocurrents in simple silicon diodes
NASA Technical Reports Server (NTRS)
Edmonds, L.
1995-01-01
A theoretical analysis solves for the steady-state photocurrents produced by a given photo-generation rate function with negligible recombination in simple silicon diodes, consisting of a uniformly doped quasi-neutral region (called 'substrate' below) adjacent to a p-n junction depletion region (DR). Special attention is given to conditions that produce 'funneling' (a term used by the single-eventeffects community) under steady-state conditions. Funneling occurs when carriers are generated so fast that the DR becomes flooded and partially or completely collapses. Some or nearly all of the applied voltage, plus built-in potential normally across the DR, is now across the substrate. This substrate voltage drop affects substrate currents. The steady-state problem can provide some qualitative insights into the more difficult transient problem. First, it was found that funneling can be induced from a distance, i.e., from carriers generated at locations outside of the DR. Secondly, it was found that the substrate can divide into two subregions, with one controlling substrate resistance and the other characterized by ambipolar diffusion. Finally, funneling was found to be more difficult to induce in the p(sup +)/n diode than in the n(sup +)/p diode. The carrier density exceeding the doping density in the substrate and at the DR boundary is not a sufficient condition to collapse a DR.
Arc plasma generator of atomic driver for steady-state negative ion source
Ivanov, A. A.; Belchenko, Yu. I.; Davydenko, V. I.; Ivanov, I. A.; Kolmogorov, V. V.; Listopad, A. A. Mishagin, V. V.; Shulzhenko, G. I.; Putvinsky, S. V.; Smirnov, A.
2014-02-15
The paper reviews the results of development of steady-state arc-discharge plasma generator with directly heated LaB{sub 6} cathode. This arc-discharge plasma generator produces a plasma jet which is to be converted into an atomic one after recombination on a metallic plate. The plate is electrically biased relative to the plasma in order to control the atom energies. Such an intensive jet of hydrogen atoms can be used in negative ion sources for effective production of negative ions on a cesiated surface of plasma grid. All elements of the plasma generator have an augmented water cooling to operate in long pulse mode or in steady state. The thermo-mechanical stresses and deformations of the most critical elements of the plasma generator were determined by simulations. Magnetic field inside the discharge chamber was optimized to reduce the local power loads. The first tests of the steady-state arc plasma generator prototype have performed in long-pulse mode.
Arc plasma generator of atomic driver for steady-state negative ion source.
Ivanov, A A; Belchenko, Yu I; Davydenko, V I; Ivanov, I A; Kolmogorov, V V; Listopad, A A; Mishagin, V V; Putvinsky, S V; Shulzhenko, G I; Smirnov, A
2014-02-01
The paper reviews the results of development of steady-state arc-discharge plasma generator with directly heated LaB6 cathode. This arc-discharge plasma generator produces a plasma jet which is to be converted into an atomic one after recombination on a metallic plate. The plate is electrically biased relative to the plasma in order to control the atom energies. Such an intensive jet of hydrogen atoms can be used in negative ion sources for effective production of negative ions on a cesiated surface of plasma grid. All elements of the plasma generator have an augmented water cooling to operate in long pulse mode or in steady state. The thermo-mechanical stresses and deformations of the most critical elements of the plasma generator were determined by simulations. Magnetic field inside the discharge chamber was optimized to reduce the local power loads. The first tests of the steady-state arc plasma generator prototype have performed in long-pulse mode.
On the Kaolinite Floc Size at the Steady State of Flocculation in a Turbulent Flow.
Zhu, Zhongfan; Wang, Hongrui; Yu, Jingshan; Dou, Jie
2016-01-01
The flocculation of cohesive fine-grained sediment plays an important role in the transport characteristics of pollutants and nutrients absorbed on the surface of sediment in estuarine and coastal waters through the complex processes of sediment transport, deposition, resuspension and consolidation. Many laboratory experiments have been carried out to investigate the influence of different flow shear conditions on the floc size at the steady state of flocculation in the shear flow. Most of these experiments reported that the floc size decreases with increasing shear stresses and used a power law to express this dependence. In this study, we performed a Couette-flow experiment to measure the size of the kaolinite floc through sampling observation and an image analysis system at the steady state of flocculation under six flow shear conditions. The results show that the negative correlation of the floc size on the flow shear occurs only at high shear conditions, whereas at low shear conditions, the floc size increases with increasing turbulent shear stresses regardless of electrolyte conditions. Increasing electrolyte conditions and the initial particle concentration could lead to a larger steady-state floc size.
Steady-State and Transient Boundary Element Methods for Coupled Heat Conduction
NASA Technical Reports Server (NTRS)
Kontinos, Dean A.
1997-01-01
Boundary element algorithms for the solution of steady-state and transient heat conduction are presented. The algorithms are designed for efficient coupling with computational fluid dynamic discretizations and feature piecewise linear elements with offset nodal points. The steady-state algorithm employs the fundamental solution approach; the integration kernels are computed analytically based on linear shape functions, linear elements, and variably offset nodal points. The analytic expressions for both singular and nonsingular integrands are presented. The transient algorithm employs the transient fundamental solution; the temporal integration is performed analytically and the nonsingular spatial integration is performed numerically using Gaussian quadrature. A series solution to the integration is derived for the instance of a singular integrand. The boundary-only character of the algorithm is maintained by integrating the influence coefficients from initial time. Numerical results are compared to analytical solutions to verify the current boundary element algorithms. The steady-state and transient algorithms are numerically shown to be second-order accurate in space and time, respectively.
Bustard, Mark A; Farley, Anne E; Bennett, Brian M; Smith, Graeme N
2003-09-01
The administration of glyceryl trinitrate (GTN; nitroglycerin) is increasing during preterm pregnancies, yet its disposition and, importantly, the extent of fetal exposure remain to be elucidated. When used as a tocolytic (pharmacological agent that stops uterine contractions), it is administered transdermally (24-48 h). Here, we quantified the maternal and fetal steady-state plasma concentrations of maternal intravenous GTN in preterm sheep and continuously monitored maternal and fetal vascular parameters to observe possible dose-dependent vascular effects. Preterm (120 days gestation) pregnant sheep (n = 6) were instrumented with maternal femoral arterial (MA) and venous (MV) and fetal femoral arterial (FA) and umbilical venous (UV) polyethylene blood-sampling catheters. During maternal GTN infusion (3.0 micro g.kg-1.min-1, 60-min duration) the steady-state GTN concentrations ([GTN]) were as follows: MA, 98.6 +/- 9.0 nM; UV, 17.4 +/- 7.6 nM; and FA, <5 nM. There were no changes in maternal and fetal mean arterial pressure and heart rate or in uterine activity. Overall, the steady-state [GTN] was established by 5 min, and the UV/MA ratio of [GTN] was 0.18. The FA [GTN] (<5 nM) indicates that the fetus cleared essentially all GTN in the UV, and the maternal and fetal heart rate and mean arterial pressure appear to be independent of maternal GTN infusion.
A new hybrid inductive scenario for a nearly steady-state Reversed Field Pinch
NASA Astrophysics Data System (ADS)
Sarff, J. S.
2007-11-01
Steady-state current sustainment is challenging for the Reversed Field Pinch (RFP). The current magnitude is large, while the pressure-driven (bootstrap) current is small, even at the RFP's high beta >20%. In the TITAN (RFP) system study [1], the current was designed steady-state using Oscillating Field Current Drive (OFCD), i.e., steady magnetic helicity injection using phased AC induction. Experiments and theory for OFCD are so far promising, but OFCD's reliance on magnetic relaxation could turn out incompatible with energy confinement requirements. Meanwhile inductive current profile control has demonstrated tokamak-like confinement in the RFP. Such control is inherently not steady-state. A hybrid scheme is proposed using OFCD to ramp the current, followed by a pulsed-burn during which inductive profile control maintains high confinement. The current is not constant but never goes to zero (sawtooth-like waveform). The current drive (and profile control) is efficient induction, simply applied at the plasma surface. The pulsed-burn phases could be separated by only a few seconds. Optimization of the hybrid cycle and other issues will be discussed. [1] http://aries.ucsd.edu/LIB/REPORT/TITAN/final.shtml
Marissen, Wilfred E.; Lloyd, Richard E.
1998-01-01
Although much is known about the multiple mechanisms which induce apoptosis, comparatively little is understood concerning the execution phase of apoptosis and the mechanism(s) of cell killing. Several reports have demonstrated that cellular translation is shut off during apoptosis; however, details of the mechanism of translation inhibition are lacking. Translation initiation factor 4G (eIF4G) is a crucial protein required for binding cellular mRNA to ribosomes and is known to be cleaved as the central part of the mechanism of host translation shutoff exerted by several animal viruses. Treatment of HeLa cells with the apoptosis inducers cisplatin and etoposide resulted in cleavage of eIF4G, and the extent of its cleavage correlated with the onset and extent of observed inhibition of cellular translation. The eIF4G-specific cleavage activity could be measured in cell lysates in vitro and was inhibited by the caspase inhibitor Ac-DEVD-CHO at nanomolar concentrations. A combination of in vivo and in vitro inhibitor studies suggest the involvement of one or more caspases in the activation and execution of eIF4G cleavage. Furthermore recombinant human caspase 3 was expressed in bacteria, and when incubated with HeLa cell lysates, was shown to produce the same eIF4G cleavage products as those observed in apoptotic cells. In addition, purified caspase 3 caused cleavage of purified eIF4G, demonstrating that eIF4G could serve as a substrate for caspase 3. Taken together, these data suggest that cellular translation is specifically inhibited during apoptosis by a mechanism involving cleavage of eIF4G, an event dependent on caspase activity. PMID:9819442
Apigenin Restricts FMDV Infection and Inhibits Viral IRES Driven Translational Activity
Qian, Suhong; Fan, Wenchun; Qian, Ping; Zhang, Dong; Wei, Yurong; Chen, Huanchun; Li, Xiangmin
2015-01-01
Foot-and-mouth disease (FMD) is a highly contagious disease of domestic and wild ruminants that is caused by FMD virus (FMDV). FMD outbreaks have occurred in livestock-containing regions worldwide. Apigenin, which is a flavonoid naturally existing in plant, possesses various pharmacological effects, including anti-inflammatory, anticancer, antioxidant and antiviral activities. Results show that apigenin can inhibit FMDV-mediated cytopathogenic effect and FMDV replication in vitro. Further studies demonstrate the following: (i) apigenin inhibits FMDV infection at the viral post-entry stage; (ii) apigenin does not exhibit direct extracellular virucidal activity; and (iii) apigenin interferes with the translational activity of FMDV driven by internal ribosome entry site. Studies on applying apigein in vivo are required for drug development and further identification of potential drug targets against FDMV infection. PMID:25835532
Yates, J L; Arfsten, A E; Nomura, M
1980-01-01
Escherichia coli ribosomal protein L1 (0.5 micro M) was found to inhibit the synthesis of both proteins of the L11 operon, L11 and L1, but not the synthesis of other proteins directed by lambda rifd 18 DNA. Similarly, S4 (1 micro M) selectively inhibited the synthesis of three proteins of the alpha operon, S13, S11, and S4, directed by lambda spcI DNA or a restriction enzyme fragment obtained from this DNA. S8 (3.6 micro M) also showed preferential inhibitory effects on the synthesis of some proteins encoded in the spc operon, L24 and L5 (and probably S14 and S8), directed by lambda spcl DNA or a restriction enzyme fragment carrying the genes for these proteins. The inhibitory effect of L1 was observed only with L1 and not with other proteins examined, including S4 and S8. Similarly, the effect of S4 was not observed with L1 or S8, and that of S8 was not seen with L1 or S4. Inhibition was shown to take place at the level of translation rather than transcription. Thus, at least some ribosomal proteins (L1 S4, and S8) have the ability to cause selective translational inhibition of the synthesis of certain ribosomal proteins whose genes are in the same operon as their own. These results support the hypothesis that certain free ribosomal proteins not assembled into ribosomes act as "autogenous" feedback inhibitors to regulate the synthesis of ribosomal proteins. Images PMID:6445562
Rodriguez, Paloma; Pérez-Morgado, M Isabel; Gonzalez, Víctor M; Martín, M Elena; Nieto, Amelia
2016-01-01
The genetic diversity of the influenza virus hinders the use of broad spectrum antiviral drugs and favors the appearance of resistant strains. Single-stranded DNA aptamers represent an innovative approach with potential application as antiviral compounds. The mRNAs of influenza virus possess a 5′cap structure and a 3′poly(A) tail that makes them structurally indistinguishable from cellular mRNAs. However, selective translation of viral mRNAs occurs in infected cells through a discriminatory mechanism, whereby viral polymerase and NS1 interact with components of the translation initiation complex, such as the eIF4GI and PABP1 proteins. We have studied the potential of two specific aptamers that recognize PABP1 (ApPABP7 and ApPABP11) to act as anti-influenza drugs. Both aptamers reduce viral genome expression and the production of infective influenza virus particles. The interaction of viral polymerase with the eIF4GI translation initiation factor is hindered by transfection of infected cells with both PABP1 aptamers, and ApPABP11 also inhibits the association of NS1 with PABP1 and eIF4GI. These results indicate that aptamers targeting the host factors that interact with viral proteins may potentially have a broad therapeutic spectrum, reducing the appearance of escape mutants and resistant subtypes. PMID:27070300
Intra-axonal translation of RhoA promotes axon growth inhibition by CSPG.
Walker, Breset A; Ji, Sheng-Jian; Jaffrey, Samie R
2012-10-10
Chondroitin sulfate proteoglycans (CSPGs) are a major component of the glial scar that contributes to the limited regeneration of the CNS after axonal injury. However, the intracellular mechanisms that mediate the effects of CSPGs are not fully understood. Here we show that axonal growth inhibition mediated by CSPGs requires intra-axonal protein synthesis. Application of CSPGs to postnatal rat dorsal root ganglia axons results in an increase in the axonal levels of phosphorylated 4E-BP1, a marker of increased protein translation. Axons grown in media containing CSPGs exhibit markedly reduced growth rates, which can be restored by the selective application of protein synthesis inhibitors to distal axons. We show that these axons contain transcripts encoding RhoA, a regulator of the cytoskeleton that is commonly used by the signaling pathways activated by many inhibitors of axon growth. We also show that selective application of CSPGs to axons results in increased intra-axonal synthesis of RhoA and that depletion of RhoA transcripts from axons results in enhanced growth of axons in the presence of CSPGs. These data identify local translation as an effector pathway of CSPGs and demonstrate that local translation of RhoA contributes to the axon growth inhibitory effect of CSPGs.
Babina, Irina S.; Herrera-Abreu, Maria Teresa; Tarazona, Noelia; Peckitt, Clare; Kilgour, Elaine; Smith, Neil R.; Geh, Catherine; Rooney, Claire; Cutts, Ros; Campbell, James; Ning, Jian; Fenwick, Kerry; Swain, Amanda; Brown, Gina; Chua, Sue; Thomas, Anne; Johnston, Stephen R.D.; Ajaz, Mazhar; Sumpter, Katherine; Gillbanks, Angela; Watkins, David; Chau, Ian; Popat, Sanjay; Cunningham, David; Turner, Nicholas C.
2017-01-01
FGFR1 and FGFR2 are amplified in many tumor types, yet what determines response to FGFR inhibition in amplified cancers is unknown. In a translational clinical trial, we show that gastric cancers with high-level clonal FGFR2 amplification have a high response rate to the selective FGFR inhibitor AZD4547, whereas cancers with subclonal or low-level amplification did not respond. Using cell lines and patient-derived xenograft models, we show that high-level FGFR2 amplification initiates a distinct oncogene addiction phenotype, characterized by FGFR2-mediated transactivation of alternative receptor kinases, bringing PI3K/mTOR signaling under FGFR control. Signaling in low-level FGFR1-amplified cancers is more restricted to MAPK signaling, limiting sensitivity to FGFR inhibition. Finally, we show that circulating tumor DNA screening can identify high-level clonally amplified cancers. Our data provide a mechanistic understanding of the distinct pattern of oncogene addiction seen in highly amplified cancers and demonstrate the importance of clonality in predicting response to targeted therapy. Significance Robust single-agent response to FGFR inhibition is seen only in high-level FGFR-amplified cancers, with copy-number level dictating response to FGFR inhibition in vitro, in vivo, and in the clinic. High-level amplification of FGFR2 is relatively rare in gastric and breast cancers, and we show that screening for amplification in circulating tumor DNA may present a viable strategy to screen patients. PMID:27179038
Realistic expectations of prepulse inhibition in translational models for schizophrenia research
Swerdlow, Neal R.; Weber, Martin; Qu, Ying; Light, Gregory A.; Braff, David L.
2009-01-01
Introduction Under specific conditions, a weak lead stimulus, or “prepulse”, can inhibit the startling effects of a subsequent intense abrupt stimulus. This startle-inhibiting effect of the prepulse, termed “prepulse inhibition” (PPI), is widely used in translational models to understand the biology of brain based inhibitory mechanisms and their deficiency in neuropsychiatric disorders. In 1981, four published reports with “prepulse inhibition” as an index term were listed on Medline; over the past 5 years, new published Medline reports with “prepulse inhibition” as an index term have appeared at a rate exceeding once every 2.7 days (n = 678). Most of these reports focus on the use of PPI in translational models of impaired sensorimotor gating in schizophrenia. This rapid expansion and broad application of PPI as a tool for understanding schizophrenia has, at times, outpaced critical thinking and falsifiable hypotheses about the relative strengths vs. limitations of this measure. Objectives This review enumerates the realistic expectations for PPI in translational models for schizophrenia research, and provides cautionary notes for the future applications of this important research tool. Conclusion In humans, PPI is not “diagnostic”; levels of PPI do not predict clinical course, specific symptoms, or individual medication responses. In preclinical studies, PPI is valuable for evaluating models or model organisms relevant to schizophrenia, “mapping” neural substrates of deficient PPI in schizophrenia, and advancing the discovery and development of novel therapeutics. Across species, PPI is a reliable, robust quantitative phenotype that is useful for probing the neurobiology and genetics of gating deficits in schizophrenia. PMID:18568339
Christiansen, Torben; Nielsen, Jens
2002-08-28
The production of the extracellular alkaline protease Savinase (EC 3.4.21.62) and glucose uptake in a non-sporulating strain of Bacillus clausii were investigated by analysing steady-state and transients during continuous cultivations. The specific production rate was found to have an optimum at a dilution rate between 0.14 and 0.17 h(-1), whereas the yield of Savinase on glucose was found to increase with decreasing specific growth rate. A linear relationship between the ribosomal RNA content and the specific production rate was found, indicating that the translational capacity may be limiting for product formation. The dynamics of the production of Savinase were studied during step changes in the dilution rate. During a step down in the dilution rate the specific production rate decreased immediately until it reached a new steady value. During a step-up an initial cease in the production rate was observed, but when glucose stopped to accumulate the production rate was regained. The glucose uptake was further investigated when chemostat cultures growing at different dilution rates were exposed to glucose pulses. The maximal glucose uptake capacity was found to be dependent on the initial specific growth rate. Furthermore, the adaptation to high glucose concentrations was faster at high dilution rates than at low dilution rates.
NASA Astrophysics Data System (ADS)
Nagel, Hannes; Janke, Wolfhard
2016-05-01
Driven diffusive systems such as the zero-range process (ZRP) and the pair-factorized steady states (PFSS) stochastic transport process are versatile tools that lend themselves to the study of transport phenomena on a generic level. While their mathematical structure is simple enough to allow significant analytical treatment, they offer a variety of interesting phenomena. With appropriate dynamics, the ZRP and PFSS models feature a condensation transition where, for a supercritical density, the translational symmetry breaks spontaneously and excess particles form a single-site or spatially extended condensate, respectively. In this paper we numerically study the typical time scales of the two stages of this condensation process: Nucleation and coarsening. Nucleation is the first stage of condensation where the bulk system relaxes to its stationary distribution and droplet nuclei form in the system. These droplets then gradually grow or evaporate in the coarsening regime to coalesce in a single condensate when the system finally relaxes to the stationary state. We use the ZRP condensation model to discuss the choice of the estimation method for the nucleation time scale and present scaling exponents for the ZRP and PFSS condensation models with respect to the choice of the typical droplet nuclei mass. We then proceed to present scaling exponents in the coarsening regime of the ZRP for partially asymmetric dynamics and the PFSS model for symmetric and asymmetric dynamics.
Muftuoglu, Yagmur; Sohl, Christal D; Mislak, Andrea C; Mitsuya, Hiroaki; Sarafianos, Stefan G; Anderson, Karen S
2014-06-01
The novel antiretroviral 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA) is a potent nucleoside HIV-1 reverse transcriptase (RT) inhibitor (NRTI). Unlike other FDA-approved NRTIs, EFdA contains a 3'-hydroxyl. Pre-steady-state kinetics showed RT preferred incorporating EFdA-TP over native dATP. Moreover, RT slowly inserted nucleotides past an EFdA-terminated primer, resulting in delayed chain termination with unaffected fidelity. This is distinct from KP1212, another 3'-hydroxyl-containing RT inhibitor considered to promote viral lethal mutagenesis. New mechanistic features of RT inhibition by EFdA are revealed.
Dubbert, Maren; Cuntz, Matthias; Piayda, Arndt; Werner, Christiane
2014-09-01
The oxygen isotope signature of water is a powerful tracer of water movement from plants to the global scale. However, little is known about the short-term variability of oxygen isotopes leaving the ecosystem via transpiration, as high-frequency measurements are lacking. A laser spectrometer was coupled to a gas-exchange chamber directly estimating branch-level fluxes in order to evaluate the short-term variability of the isotopic composition of transpiration (δE ) and to investigate the role of isotopic non-steady-state transpiration under natural conditions in cork-oak trees (Quercus suber) during distinct Mediterranean seasons. The measured δ(18) O of transpiration (δE ) deviated from isotopic steady state throughout most of the day even when leaf water at the evaporating sites was near isotopic steady state. High agreement was found between estimated and modeled δE values assuming non-steady-state enrichment of leaf water. Isoforcing, that is, the influence of the transpirational δ(18) O flux on atmospheric values, deviated from steady-state calculations but daily means were similar between steady state and non-steady state. However, strong daytime isoforcing on the atmosphere implies that short-term variations in δE are likely to have consequences for large-scale applications, for example, partitioning of ecosystem fluxes or satellite-based applications.
NASA Astrophysics Data System (ADS)
Tsakiroglou, C. D.; Avraam, D. G.; Payatakes, A. C.
2007-09-01
The water krw and oil kro relative permeability curves of a glass-etched planar pore network are estimated with history matching from transient displacement experiments performed at varying values of the capillary number, Ca, for two fluid systems: one of intermediate and one of strong wettability. The transient k,k are compared to corresponding ones measured with the steady-state method on the same porous medium [Avraam DG, Payatakes AC. Flow regimes and relative permeabilities during steady-state two-phase flow in porous media. J Fluid Mech 1995;293:207-36; Avraam DG, Payatakes AC. Generalized relative permeability coefficients during steady-state two-phase flow in porous media and correlation with the flow mechanisms. Transport Porous Med 1995;20:135-68; Avraam DG, Payatakes AC. Flow mechanisms, relative permeabilities, and coupling effects in steady-state two-phase flow through porous media. The case of strong wettability. Ind Eng Chem Res 1999;38:778-86.], and potential differences from them are interpreted in the light of the differences between the transient growth pattern, and the steady-state two-phase flow regime. For intermediate wettability, the transient kro and krw exceed the corresponding steady-state functions at low Ca values and have the tendency to become smaller than the steady-state ones at high Ca values. For strong wettability, the transient kro and krw are increasing functions of Ca, the transient kro is higher than the steady-state one, whereas the transient krw decreases substantially and becomes lower than the steady-state one at low Ca values. The dynamic capillary pressure estimated from transient experiments is a decreasing function of Ca in agreement with previous theoretical and experimental studies.
Fosinopril/hydrochlorothiazide: single dose and steady-state pharmacokinetics and pharmacodynamics
O’Grady, Padraig; Yee, Kan-Fat; Lins, Robert; Mangold, Bernhard
1999-01-01
Aims Fosinoprilat, the active product of fosinopril, is eliminated by an hepatic pathway in addition to the renal pathway shared by other angiotensin converting enzyme inhibitors (ACEIs). This study aimed to determine whether impaired renal function affects the pharmacokinetics and pharmacodynamics of a combination of fosinopril and hydrochlorothiazide (HCTZ). Methods The study had a parallel-group design comparing patients with renal impairment and body-mass-index-matched normal controls. The study was done in a University clinic in 13 patients with renal impairment (mean creatinine clearance 55.7±15.6 ml min−1 1.73 m−2) and 13 age-, sex-, and body-mass-index-matched normal controls (mean creatinine clearance 102.4±8.9 ml min−1 1.73 m−2). All patients and normal controls received fosinopril sodium 20 mg and HCTZ 12.5 mg as a daily oral administration on days 1–5. Non-compartmental pharmacokinetic parameters of fosinoprilat and HCTZ were determined from blood and urine samples obtained over 48 h starting on Day 1 (single dose) and Day 5 (steady state): maximum serum concentration (Cmax), time to maximum serum concentration (tmax), area under the serum concentration-time curve during the dosing interval (AUC), cumulative urinary excretion (CUE) and the accumulation index (AI; ratio of AUC-day 5/AUC-day 1). Pharmacodynamic parameters were also measured over 24 h on day 1 and over 48 h on day 5: serum ACE activity and arterial blood pressure. Results Fosinoprilat pharmacokinetic parameters on day 1 in renally impaired vs normal patients: Cmax = 387±0.19 vs 324±0.25 ng ml−1 (P = 0.07); tmax = 3.5 vs 3.0 h (P = 0.58); AUC = 3510±0.29 vs 2701±0.35 ng ml−1 h (P = 0.072); CUE = 5.08±2.70 vs 7.40±2.56% (P = 0.009). Fosinoprilat parameters on day 5: Cmax = 517±0.40 vs 357±0.19 ng ml−1 (P = 0.007); tmax = 3.0 vs 3.0 h (P >0.99); AUC = 4098±0.43 vs 2872±0.30 ng ml−1 h (P = 0.027); CUE = 6.81±3.53 vs 8.10±2.80% (P = 0.068). AI = 1.17±0.33 vs
Wang, Yijun; Wei, Chun-Shu; Jung, Tzyy-Ping
2014-01-01
Recent advances in mobile electroencephalogram (EEG) systems, featuring non-prep dry electrodes and wireless telemetry, have enabled and promoted the applications of mobile brain-computer interfaces (BCIs) in our daily life. Since the brain may behave differently while people are actively situated in ecologically-valid environments versus highly-controlled laboratory environments, it remains unclear how well the current laboratory-oriented BCI demonstrations can be translated into operational BCIs for users with naturalistic movements. Understanding inherent links between natural human behaviors and brain activities is the key to ensuring the applicability and stability of mobile BCIs. This study aims to assess the quality of steady-state visual-evoked potentials (SSVEPs), which is one of promising channels for functioning BCI systems, recorded using a mobile EEG system under challenging recording conditions, e.g., walking. To systematically explore the effects of walking locomotion on the SSVEPs, this study instructed subjects to stand or walk on a treadmill running at speeds of 1, 2, and 3 mile (s) per hour (MPH) while concurrently perceiving visual flickers (11 and 12 Hz). Empirical results of this study showed that the SSVEP amplitude tended to deteriorate when subjects switched from standing to walking. Such SSVEP suppression could be attributed to the walking locomotion, leading to distinctly deteriorated SSVEP detectability from standing (84.87 ± 13.55%) to walking (1 MPH: 83.03 ± 13.24%, 2 MPH: 79.47 ± 13.53%, and 3 MPH: 75.26 ± 17.89%). These findings not only demonstrated the applicability and limitations of SSVEPs recorded from freely behaving humans in realistic environments, but also provide useful methods and techniques for boosting the translation of the BCI technology from laboratory demonstrations to practical applications. PMID:24744718
NASA Technical Reports Server (NTRS)
Pogorzelski, Ronald J.
2004-01-01
When electronic oscillators are coupled to nearest neighbors to form an array on a hexagonal lattice, the planar phase distributions desired for excitation of a phased array antenna are not steady state solutions of the governing non-linear equations describing the system. Thus the steady state phase distribution deviates from planar. It is shown to be possible to obtain an exact solution for the steady state phase distribution and thus determine the deviation from the desired planar distribution as a function of beam steering angle.
Steady state estimation of soil organic carbon using satellite-derived canopy leaf area index
Fang, Yilin; Liu, Chongxuan; Huang, Maoyi; ...
2014-12-02
Soil organic carbon (SOC) plays a key role in the global carbon cycle that is important for decadal-to-century climate prediction. Estimation of soil organic carbon stock using model-based methods typically requires spin-up (time marching transient simulation) of the carbon-nitrogen (CN) models by performing hundreds to thousands years long simulations until the carbon-nitrogen pools reach dynamic steady-state. This has become a bottleneck for global modeling and analysis, especially when testing new physical and/or chemical mechanisms and evaluating parameter sensitivity. Here we report a new numerical approach to estimate global soil carbon stock that can avoid the long term spin-up of themore » CN model. The approach uses canopy leaf area index (LAI) from satellite data and takes advantage of a reaction-based biogeochemical module NGBGC (Next Generation BioGeoChemical Module) that was recently developed and incorporated in version 4 of the Community Land Model (CLM4). Although NGBGC uses the same CN mechanisms as used in CLM4CN, it can be easily configured to run prognostic or steady state simulations. In this approach, monthly LAI from the multi-year Moderate Resolution Imaging Spectroradiometer (MODIS) data was used to calculate potential annual average gross primary production (GPP) and leaf carbon for the period of the atmospheric forcing. The calculated potential annual average GPP and leaf C are then used by NGBGC to calculate the steady-state distributions of carbon and nitrogen in different vegetation and soil pools by solving the steady-state reaction-network in NGBGC using the Newton-Raphson method. The new approach was applied at point and global scales and compared with SOC derived from long spin-up by running NGBGC in prognostic mode, and SOC from the empirical data of the Harmonized World Soil Database (HWSD). The steady-state solution is comparable to the spin-up value when the MODIS LAI is close to the LAI from the spin-up solution, and largely
Steady state estimation of soil organic carbon using satellite-derived canopy leaf area index
Fang, Yilin; Liu, Chongxuan; Huang, Maoyi; Li, Hongyi; Leung, Lai-Yung R.
2014-12-02
Soil organic carbon (SOC) plays a key role in the global carbon cycle that is important for decadal-to-century climate prediction. Estimation of soil organic carbon stock using model-based methods typically requires spin-up (time marching transient simulation) of the carbon-nitrogen (CN) models by performing hundreds to thousands years long simulations until the carbon-nitrogen pools reach dynamic steady-state. This has become a bottleneck for global modeling and analysis, especially when testing new physical and/or chemical mechanisms and evaluating parameter sensitivity. Here we report a new numerical approach to estimate global soil carbon stock that can avoid the long term spin-up of the CN model. The approach uses canopy leaf area index (LAI) from satellite data and takes advantage of a reaction-based biogeochemical module NGBGC (Next Generation BioGeoChemical Module) that was recently developed and incorporated in version 4 of the Community Land Model (CLM4). Although NGBGC uses the same CN mechanisms as used in CLM4CN, it can be easily configured to run prognostic or steady state simulations. In this approach, monthly LAI from the multi-year Moderate Resolution Imaging Spectroradiometer (MODIS) data was used to calculate potential annual average gross primary production (GPP) and leaf carbon for the period of the atmospheric forcing. The calculated potential annual average GPP and leaf C are then used by NGBGC to calculate the steady-state distributions of carbon and nitrogen in different vegetation and soil pools by solving the steady-state reaction-network in NGBGC using the Newton-Raphson method. The new approach was applied at point and global scales and compared with SOC derived from long spin-up by running NGBGC in prognostic mode, and SOC from the empirical data of the Harmonized World Soil Database (HWSD). The steady-state solution is comparable to the spin-up value when the MODIS LAI is close to the LAI from the spin-up solution, and largely
High-power and steady-state operation of ICRF heating in the large helical device
Mutoh, T. Seki, T.; Saito, K.; Kasahara, H.; Seki, R.; Kamio, S.; Kumazawa, R.; Kubo, S.; Shimozuma, T.; Yoshimura, Y.; Igami, H.; Takahashi, H.; Ii, T.; Makino, R.; Nagaoka, K.; Nomura, G.; Shinya, T.
2015-12-10
Recent progress in an ion cyclotron range of frequencies (ICRF) heating system and experiment results in a Large Helical Device (LHD) are reported. Three kinds of ICRF antenna pairs were installed in the LHD, and the operation power regimes were extended up to 4.5 MW; also, the steady-state operation was extended for more than 45 min in LHD at a MW power level. We studied ICRF heating physics in heliotron configuration using a Hand Shake type (HAS) antenna, Field Aligned Impedance Transforming (FAIT) antenna, and Poloidal Array (PA) antenna, and established the optimum minority-ion heating scenario in an LHD. The FAIT antenna having a novel impedance transformer inside the vacuum chamber could reduce the VSWR and successfully injected a higher power to plasma. We tested the PA antennas completely removing the Faraday-shield pipes to avoid breakdown and to increase the plasma coupling. The heating performance was almost the same as other antennas; however, the heating efficiency was degraded when the gap between the antenna and plasma surface was large. Using these three kinds of antennas, ICRF heating could contribute to raising the plasma beta with the second- and third-harmonic cyclotron heating mode, and also to raising the ion temperature as discharge cleaning tools. In 2014, steady-state operation plasma with a line-averaged electron density of 1.2 × 10{sup 19} m{sup −3}, ion and electron temperature of 2 keV, and plasma sustainment time of 48 min was achieved with ICH and ECH heating power of 1.2 MW for majority helium with minority hydrogen. In 2015, the higher-power steady-state operation with a heating power of up to 3 MW was tested with higher density of 3 × 10{sup 19} m{sup −3}.
Thermal noise of mechanical oscillators in steady states with a heat flux
NASA Astrophysics Data System (ADS)
Conti, Livia; Lazzaro, Claudia; Karapetyan, Gagik; Bonaldi, Michele; Pegoraro, Matteo; Thakur, Ram-Krishna; De Gregorio, Paolo; Rondoni, Lamberto
2014-09-01
We present an experimental investigation of the statistical properties of the position fluctuations of low-loss oscillators in nonequilibrium steady states. The oscillators are coupled to a heat bath, and a nonequilibrium steady state is produced by flowing a constant heat flux, setting a temperature difference across the oscillators. We investigated the distribution of the measurements of the square of the oscillator position and searched for signs of changes with respect to the equilibrium case. We found that, after normalization by the mean value, the second, third, and fourth standardized statistical moments are not modified by the underlying thermodynamic state. This differs from the behavior of the absolute, i.e., not normalized, second moment, which is strongly affected by temperature gradients and heat fluxes. We illustrate this with a numerical experiment in which we study via molecular dynamics the fluctuations of the length of a one-dimensional chain of identical particles interacting via anharmonic interparticle potentials, with the extremes thermostated at different temperatures: we use the variance of the length in correspondence to its first elastic mode of resonance to define an effective temperature which we observe to depart from the thermodynamic one in the nonequilibrium states. We investigate the effect of changing the interparticle potential and show that the qualitative behavior of the nonequilibrium excess is unchanged. Our numerical results are consistent with the chain length being Gaussian distributed in the nonequilibrium states. Our experimental investigation reveals that the position variance is the only, and crucially easily accessible, observable for distinguishing equilibrium from nonequilibrium steady states. The consequences of this fact for the design of interferometric gravitational wave detectors are discussed.
Wolfaardt, G. M.; Lawrence, J. R.; Hendry, M. J.; Robarts, R. D.; Caldwell, D. E.
1993-01-01
A diffusion gradient plate was constructed and evaluated for its potential use in the isolation of degradative microbial consortia from natural habitats. In this model, a steady-state concentration gradient of diclofop methyl, established by diffusion through an agarose gel, provided the carbon for microbial growth. Colonization of the gel surface was observed with epifluorescence and scanning confocal laser microscopy to determine microbial responses to the diclofop gradient. A detectable gradient developed over a narrow band (<10 mm). Consequently, quantitative analyses of the microbial response to the gradient were difficult to obtain. A two-dimensional, finite-element numerical transport model for advective-diffusive transport was used to simulate concentration and flux profiles in the physical model. The simulated profiles were correlated with the measured concentration gradient (R2 = 0.89) and the cell numbers on the gel surface (R2 = 0.85). The numerical model was subsequently used to redesign the physical model. The detectable concentration gradient in the modified physical model extended over the length of the gel (38 mm). The simulated profile again showed a good correlation with the measured profile (R2 = 0.96) and the microbial responses to the concentration gradient (R2 = 0.99). It was concluded that these gradients provide the steady-state environments needed to sustain steady-state consortia. They also provide a physical pathway for the development of degradative biofilms from low to high concentrations of toxicants and simulate conditions under which low concentrations of toxicant are supplied at a constant flux over long periods of time, such as the conditions that could occur in natural environments. Images PMID:16349007
Modeling of the blood rheology in steady-state shear flows
Apostolidis, Alex J.; Beris, Antony N.
2014-05-15
We undertake here a systematic study of the rheology of blood in steady-state shear flows. As blood is a complex fluid, the first question that we try to answer is whether, even in steady-state shear flows, we can model it as a rheologically simple fluid, i.e., we can describe its behavior through a constitutive model that involves only local kinematic quantities. Having answered that question positively, we then probe as to which non-Newtonian model best fits available shear stress vs shear-rate literature data. We show that under physiological conditions blood is typically viscoplastic, i.e., it exhibits a yield stress that acts as a minimum threshold for flow. We further show that the Casson model emerges naturally as the best approximation, at least for low and moderate shear-rates. We then develop systematically a parametric dependence of the rheological parameters entering the Casson model on key physiological quantities, such as the red blood cell volume fraction (hematocrit). For the yield stress, we base our description on its critical, percolation-originated nature. Thus, we first determine onset conditions, i.e., the critical threshold value that the hematocrit has to have in order for yield stress to appear. It is shown that this is a function of the concentration of a key red blood cell binding protein, fibrinogen. Then, we establish a parametric dependence as a function of the fibrinogen and the square of the difference of the hematocrit from its critical onset value. Similarly, we provide an expression for the Casson viscosity, in terms of the hematocrit and the temperature. A successful validation of the proposed formula is performed against additional experimental literature data. The proposed expression is anticipated to be useful not only for steady-state blood flow modeling but also as providing the starting point for transient shear, or more general flow modeling.
FtsZ Filament Dynamics at Steady State: Subunit Exchange with and without Nucleotide Hydrolysis†
Chen, Yaodong; Erickson, Harold P.
2009-01-01
We have measured three aspects of FtsZ filament dynamics at steady state: rates of GTP hydrolysis, subunit exchange between protofilaments, and disassembly induced by dilution or excess GDP. All three reactions were slowed with an increase in the potassium concentration from 100 to 500 mM, via replacement of potassium with rubidium, or with an increase in the magnesium concentration from 5 to 20 mM. Electron microscopy showed that the polymers assembled under the conditions of fastest assembly were predominantly short, one-stranded protofilaments, whereas under conditions of slower dynamics, the protofilaments tended to associate into long, thin bundles. We suggest that exchange of subunits between protofilaments at steady state involves two separate mechanisms: (1) fragmentation or dissociation of subunits from protofilament ends following GTP hydrolysis and (2) reversible association and dissociation of subunits from protofilament ends independent of hydrolysis. Exchange of nucleotides on these recycling subunits could give the appearance of exchange directly into the polymer. Several of our observations suggest that exchange of nucleotide can take place on these recycling subunits, but not directly into the FtsZ polymer. Annealing of protofilaments was demonstrated for the L68W mutant in EDTA buffer but not in Mg buffer, where rapid cycling of subunits may obscure the effect of annealing. We also reinvestigated the nucleotide composition of FtsZ polymers at steady state. We found that the GDP:GTP ratio was 50:50 for concentrations of GTP > 100 μM, significantly higher than the 20:80 ratio previously reported at 20 μM GTP. PMID:19527070
Guan, Wei-Jie; Gao, Yong-Hua; Xu, Gang; Lin, Zhi-Ya; Tang, Yan; Li, Hui-Min; Li, Zhi-Min; Zheng, Jin-Ping
2015-01-01
Background Current status of Pseudomonas aeruginosa (PA) infection in clinically stable bronchiectasis in mainland China remains unclear. Objective To compare the inflammation and lung function impairment in bronchiectasis patients isolated or infected with PA, potentially pathogenic microorganisms (PPMs) and commensals, and to identify factors associated with PA isolation and infection. Methods Patients with steady-state bronchiectasis and healthy subjects were recruited. Peripheral blood and sputum were sampled to determine inflammatory markers and bacterial loads in steady-state bronchiectasis and health. Spirometry and diffusing capacity were also measured. Results We enrolled 144 bronchiectasis patients and 23 healthy subjects. PA isolation and infection accounted for 44 and 39 patients, who demonstrated significant inflammatory responses and markedly impaired spirometry, but not diffusing capacity, compared with healthy subjects and patients isolated with other PPMs and commensals (all P<0.05). Except for heightened sputum inflammatory responses, there were no notable differences in serum inflammation and lung function as with the increased density of PA. Female gender [odds ratio (OR): 3.10 for PA isolation; OR: 3.74 for PA infection], 4 or more exacerbations within 2 years (OR: 3.74 for PA isolation, OR: 2.95 for PA infection) and cystic bronchiectasis (OR: 3.63 for PA isolation, OR: 4.47 for PA infection) were the factors consistently associated with PA isolation and infection. Conclusions PA elicits intense inflammation and lung function impairment in steady-state bronchiectasis. The density of PA does not correlate with most clinical indices. PA infection is associated with females, frequent exacerbations and cystic bronchiectasis. PMID:25973228
Steady-state diffusion of water through soft-contact-lens materials.
Fornasiero, Francesco; Krull, Florian; Prausnitz, John M; Radke, Clayton J
2005-10-01
Water transport through soft contact lenses (SCL) is important for acceptable performance on the human eye. Chemical-potential gradient-driven diffusion rates of water through SCL materials are measured with an evaporation-cell technique. Water is evaporated from the bottom surface of a lens membrane by impinging air at controlled flow rate and humidity. The resulting weight loss of a water reservoir covering the top surface of the contact-lens material is recorded as a function of time. New results are reported for a conventional hydrogel material (SofLens One Day, hilafilcon A, water content at saturation w10 = 70 weight %) and a silicone hydrogel material (PureVision, balafilcon A, w10 = 36%), with and without surface oxygen plasma treatment. Also, previously reported data for a conventional 2-hydroxyethyl methacrylate (HEMA)-SCL (w10 = 38%) hydrogel are reexamined and compared with those for SofLens One Day and PureVision hydrogels. Measured steady-state water fluxes are largest for SofLens One Day, followed by PureVision and HEMA. In some cases, the measured steady-state water fluxes increase with rising relative air humidity. This increase, due to an apparent mass-transfer resistance at the surface (trapping skinning), is associated with formation of a glassy skin at the air/membrane interface when the relative humidity is below 55-75%. Steady-state water fluxes are interpreted through an extended Maxwell-Stefan diffusion model for a mixture of species starkly different in size. Thermodynamic nonideality is considered through Flory-Rehner polymer-solution theory. Shrinking/swelling is self-consistently modeled by conservation of the total polymer mass. Fitted Maxwell-Stefan diffusivities increase significantly with water concentration in the contact lens.
Steady-state pattern electroretinogram and frequency doubling technology in anisometropic amblyopia
Schiavi, Costantino; Tassi, Filippo; Finzi, Alessandro; Strobbe, Ernesto; Cellini, Mauro
2016-01-01
Background Steady-state pattern electroretinogram (PERG) and frequency doubling technology (FDT) perimetry can be used to selectively investigate the activity of the M-Y ganglion cells in adult anisometropic amblyopes. Methods Fifteen normal subjects (mean 27.8±4.1 years) and 15 adults with anisometropic amblyopia (mean 28.7±5.9 years) were analyzed using steady-state PERG and FDT. Results The amplitude of steady-state PERG was significantly different not only among the control group and both the amblyopic eye (P=0.0001) and the sound eye group (P=0.0001), but also between the latter two groups (P=0.006). The difference in FDT mean deviation was statistically significant not only between the control group and amblyopic eye group (P=0.0002), but also between the control group and the sound eye group (P=0.0009). The FDT pattern standard deviation was significantly higher in the control group rather than in the amblyopic eye (P=0.0001) or the sound eye group (P=0.0001). A correlation was found between the reduction in PERG amplitude and the increase in FDT-pattern standard deviation index not only in amblyopic (P=0.0025) and sound (P=0.0023) eyes, but also in the healthy control group (P=0.0001). Conclusion These data demonstrate that in anisometropic amblyopia, there is an abnormal functionality of a subgroup of the magnocellular ganglion cells (M-Y), and the involvement of these cells, together with the parvocellular pathway, may play a key role in the clinical expression of the disease. PMID:27799733
Czarnecki, Olaf; Peter, Enrico; Grimm, Bernhard
2011-01-01
Tetrapyrroles and carotenoids are required for many indispensable functions in photosynthesis. Tetrapyrroles are essential metabolites for photosynthesis, redox reaction, and detoxification of reactive oxygen species and xenobiotics, while carotenoids function as accessory pigments, in photoprotection and in attraction to animals. Their branched metabolic pathways of synthesis and degradation are tightly controlled to provide adequate amounts of each metabolite (carotenoids/tetrapyrroles) and to prevent accumulation of photoreactive intermediates (tetrapyrroles). Many Arabidopsis mutants and transgenic plants have been reported to show variations in steady-state levels of tetrapyrrole intermediates and contents of different carotenoid species. It is a challenging task to determine the minute amounts of these metabolites to assess the metabolic flow and the activities of both pigment-synthesising and degrading pathways, to unravel limiting enzymatic steps of these biosynthetic pathways, and to characterise mutants with accumulating intermediates. In this chapter, we present a series of methods to qualify and quantify anabolic and catabolic intermediates of Arabidopsis tetrapyrrole metabolism, and describe a common method for quantification of different plant carotenoid species. Additionally, we introduce two methods for quantification of non-covalently bound haem. The approach of analysing steady-state levels of tetrapyrrole intermediates in plants, when applied in combination with analyses of transcripts, proteins, and enzyme activities, enables the biochemical and genetic elucidation of the tetrapyrrole pathway in wild-type plants, varieties, and mutants. Steady-state levels of tetrapyrrole intermediates are only up to 1/1,000 of the amounts of the accumulating end-products, chlorophyll, and haem. Although present in very low amounts, the accumulation and availability of tetrapyrrole intermediates have major consequences on the physiology and activity of
Manhart, Michael; Haldane, Allan
2012-01-01
Monomorphic loci evolve through a series of substitutions on a fitness landscape. Understanding how mutation, selection, and genetic drift drive this process, and uncovering the structure of the fitness landscape from genomic data are two major goals of evolutionary theory. Population genetics models of the substitution process have traditionally focused on the weak-selection regime, which is accurately described by diffusion theory. Predictions in this regime can be considered universal in the sense that many population models exhibit equivalent behavior in the diffusion limit. However, a growing number of experimental studies suggest that strong selection plays a key role in some systems, and thus there is a need to understand universal properties of models without a priori assumptions about selection strength. Here we study time reversibility in a general substitution model of a monomorphic haploid population. We show that for any time-reversible population model, such as the Moran process, substitution rates obey an exact scaling law. For several other irreversible models, such as the simple Wright-Fisher process and its extensions, the scaling law is accurate up to selection strengths that are well outside the diffusion regime. Time reversibility gives rise to a power-law expression for the steady-state distribution of populations on an arbitrary fitness landscape. The steady-state behavior is dominated by weak selection and is thus adequately described by the diffusion approximation, which guarantees universality of the steady-state formula and its applicability to the problem of reconstructing fitness landscapes from DNA or protein sequence data. PMID:22838027
Collisional evolution - an analytical study for the non steady-state mass distribution.
NASA Astrophysics Data System (ADS)
Vieira Martins, R.
1999-05-01
To study the collisional evolution of asteroidal groups one can use an analytical solution for the self-similar collision cascades. This solution is suitable to study the steady-state mass distribution of the collisional fragmentation. However, out of the steady-state conditions, this solution is not satisfactory for some values of the collisional parameters. In fact, for some values for the exponent of the mass distribution power law of an asteroidal group and its relation to the exponent of the function which describes "how rocks break" the author arrives at singular points for the equation which describes the collisional evolution. These singularities appear since some approximations are usually made in the laborious evaluation of many integrals that appear in the analytical calculations. They concern the cutoff for the smallest and the largest bodies. These singularities set some restrictions to the study of the analytical solution for the collisional equation. To overcome these singularities the author performed an algebraic computation considering the smallest and the largest bodies and he obtained the analytical expressions for the integrals that describe the collisional evolution without restriction on the parameters. However, the new distribution is more sensitive to the values of the collisional parameters. In particular the steady-state solution for the differential mass distribution has exponents slightly different from 11/6 for the usual parameters in the asteroid belt. The sensitivity of this distribution with respect to the parameters is analyzed for the usual values in the asteroidal groups. With an expression for the mass distribution without singularities, one can evaluate also its time evolution. The author arrives at an analytical expression given by a power series of terms constituted by a small parameter multiplied by the mass to an exponent, which depends on the initial power law distribution. This expression is a formal solution for the
Microchemostat array with small-volume fraction replenishment for steady-state microbial culture.
Park, Jaewon; Wu, Jianzhang; Polymenis, Michael; Han, Arum
2013-11-07
A chemostat is a bioreactor in which microorganisms can be cultured at steady-state by controlling the rate of culture medium inflow and waste outflow, thus maintaining media composition over time. Even though many microbial studies could greatly benefit from studying microbes in steady-state conditions, high instrument cost, complexity, and large reagent consumption hamper the routine use of chemostats. Microfluidic-based chemostats (i.e. microchemostats) can operate with significantly smaller reagent consumption while providing accurate chemostatic conditions at orders of magnitude lower cost compared to conventional chemostats. Also, microchemostats have the potential to significantly increase the throughput by integrating arrays of microchemostats. We present a microchemostat array with a unique two-depth culture chamber design that enables small-volume fraction replenishment of culture medium as low as 1% per replenishment cycle in a 250 nl volume. A system having an array of 8 microchemostats on a 40 × 60 mm(2) footprint could be automatically operated in parallel by a single controller unit as a demonstration for potential high throughput microbial studies. The model organism, Saccharomyces cerevisiae, successfully reached a stable steady-state of different cell densities as a demonstration of the chemostatic functionality by programming the dilution rates. Chemostatic functionality of the system was further confirmed by quantifying the budding index as a function of dilution rate, a strong indicator of growth-dependent cell division. In addition, the small-volume fraction replenishment feature minimized the cell density fluctuation during the culture. The developed system provides a robust, low-cost, and higher throughput solution to furthering studies in microbial physiology.
Steady-State Diffusion of Water through Soft-Contact LensMaterials
Fornasiero, Francesco; Krull, Florian; Radke, Clayton J.; Prausnitz, JohnM.
2005-01-31
Water transport through soft contact lenses (SCL) is important for acceptable performance on the human eye. Chemical-potential gradient-driven diffusion rates of water through soft-contact-lens materials are measured with an evaporation-cell technique. Water is evaporated from the bottom surface of a lens membrane by impinging air at controlled flow rate and humidity. The resulting weight loss of a water reservoir covering the top surface of the contact-lens material is recorded as a function of time. New results are reported for a conventional hydrogel material (SofLens{trademark} One Day, hilafilcon A, water content at saturation W{sub 10} = 70 weight %) and a silicone hydrogel material (PureVision{trademark}, balafilcon A, W{sub 10} = 36 %), with and without surface oxygen plasma treatment. Also, previously reported data for a conventional HEMA-SCL (W{sub 10} = 38 %) hydrogel are reexamined and compared with those for SofLens{trademark} One Day and PureVision{trademark} hydrogels. Measured steady-state water fluxes are largest for SofLens{trademark} One Day, followed by PureVision{trademark} and HEMA. In some cases, the measured steady-state water fluxes increase with rising relative air humidity. This increase, due to an apparent mass-transfer resistance at the surface (trapping skinning), is associated with formation of a glassy skin at the air/membrane interface when the relative humidity is below 55-75%. Steady-state water-fluxes are interpreted through an extended Maxwell-Stefan diffusion model for a mixture of species starkly different in size. Thermodynamic nonideality is considered through Flory-Rehner polymer-solution theory. Shrinking/swelling is self-consistently modeled by conservation of the total polymer mass. Fitted Maxwell-Stefan diffusivities increase significantly with water concentration in the contact lens.
Determination of longitudinal aerodynamic derivatives from steady-state measurement of an aircraft
NASA Technical Reports Server (NTRS)
Klein, V.
1977-01-01
A method for the estimation of aerodynamic derivatives from steady-state symmetric flight data is developed. The derivatives considered are the longitudinal static stability and control derivatives, damping derivatives due to tail, and the derivatives expressing the speed effect on the lift and pitching moment coefficients. The method is an extension of the well known theory of longitudinal static stability and control, and corresponding flight data interpretation. Measured data is assumed in the form of trim curves and lift vs angle of attack. The expressions for the derivative estimates are in the form of algebraic relationships containing known constants, and directly or indirectly measured quantities.
Steady States and Dynamics of 2-D Nematic Polymers Driven by an Imposed Weak Shear
2007-01-01
f (0)(θ,T0,T1) is a quasi-steady state if it is independent of T0. In particu- lar , the phase angle α in (4.3) is independent of T0. However, as we...posedness for the dumbbell model of polymeric fluids, Comm. Math. Phys., 248, 409-427, 2004. [11] I. Fatkullin and V. Slastikov, A note on the Onsager ...model of nematic phase transitions, Commun. Math. Sci., 3, 21-26, 2005. [12] I. Fatkullin and V. Slastikov, Critical points of the Onsager functional
Investigation of component failure rates for pulsed versus steady state tokamak operation
Cadwallader, L.C.
1992-07-01
This report presents component failure rate data sources applicable to magnetic fusion systems, and defines multiplicative factors to adjust these data for specific use on magnetic fusion experiment designs. The multipliers address both long pulse and steady state tokamak operation. Thermal fatigue and radiation damage are among the leading reasons for large multiplier values in pulsed operation applications. Field failure rate values for graphite protective tiles are presented, and beryllium tile failure rates in laboratory testing are also given. All of these data can be used for reliability studies, safety analyses, design tradeoff studies, and risk assessments.
Interaction-stabilized steady states in the driven O (N ) model
NASA Astrophysics Data System (ADS)
Chandran, Anushya; Sondhi, S. L.
2016-05-01
We study periodically driven bosonic scalar field theories in the infinite N limit. It is well known that the free theory can undergo parametric resonance under monochromatic modulation of the mass term and thereby absorb energy indefinitely. Interactions in the infinite N limit terminate this increase for any choice of the UV cutoff and driving frequency. The steady state has nontrivial correlations and is synchronized with the drive. The O (N ) model at infinite N provides the first example of a clean interacting quantum system that does not heat to infinite temperature at any drive frequency.
On the Stress-Temperature Scaling for Steady-State Flow in Metallic Glasses
Guan, Pengfei; Chen, Mingwei; Egami, T.
2010-01-01
Through computer simulation of steady-state flow in a Zr50Cu40Al10 metallic glass using a set of realistic potentials we found a simple scaling relationship between temperature and stress as they affect viscosity. The scaling relationship provides new insights for the microscopic mechanism of shear flow in the glassy state, in terms of the elastic energy of the applied stress modifying the local energy landscape. The results suggest that the plastic flow and mechanical failure in metallic glasses are consequences of stress-induced glass transition.
The VERRUN and VERNAL software systems for steady-state visual evoked response experimentation
NASA Technical Reports Server (NTRS)
Levison, W. H.; Zacharias, G. L.
1984-01-01
Two digital computer programs were developed for use in experiments involving steady-state visual evoked response (VER): VERRUN, whose primary functions are to generate a sum-of-sines (SOS) stimulus and to digitize and store electro-cortical response; and VERNAL, which provides both time- and frequency-domain metrics of the evoked response. These programs were coded in FORTRAN for operation on the PDP-11/34, using the RSX-11 Operating System, and the PDP-11/23, using the RT-11 Operating System. Users' and programmers' guides to these programs are provided, and guidelines for model analysis of VER data are suggested.
A calculation of steady-state electrocoloration parameters of electrochromic systems
Ushakov, O.A.; Shelepin, I.V.
1986-01-01
Electrochromic systems based on solutions of compounds whichchange their color reversibly when electrochemical reactions take place may find wide applications in the design of laser-light modulators, light filters with variable optical density, and means for visual information display. It is the aim of this work to find the limiting steady-state values of current density and electrically induced optical density for electrochromic systems and to discuss possibilities of eliminating solution convection during current flow in them. During prolonged electrocoloration, the convection of anolyte and catholyte in opposite directions can lead to ''glistering'' or separation of the solution layer.
Quantitative, steady-state properties of Catania's computational model of the operant reserve.
Berg, John P; McDowell, J J
2011-05-01
Catania (2005) found that a computational model of the operant reserve (Skinner, 1938) produced realistic behavior in initial, exploratory analyses. Although Catania's operant reserve computational model demonstrated potential to simulate varied behavioral phenomena, the model was not systematically tested. The current project replicated and extended the Catania model, clarified its capabilities through systematic testing, and determined the extent to which it produces behavior corresponding to matching theory. Significant departures from both classic and modern matching theory were found in behavior generated by the model across all conditions. The results suggest that a simple, dynamic operant model of the reflex reserve does not simulate realistic steady state behavior.
A steady-state kinetic analysis of the prolyl-4-hydroxylase mechanism.
Soskel, N T; Kuby, S A
1981-01-01
Published kinetic data by Kivirikko, et al. on the prolyl-4-hydroxylase reaction have been re-evaluated using the overall steady-state velocity equation in the forward and reverse directions for an ordered ter ter kinetic mechanism. Qualitatively, the published data for prolyl-4-hydroxylase appear to fit the predicted patterns for this kinetic mechanism. More kinetic data are needed to confirm these results and to quantitate the kinetic parameters but, tentatively, the order of substrate addition would appear to be alpha-ketoglutarate, oxygen, and peptide; and the order of product release would be hydroxylated peptide (or collagen), carbon dioxide, and succinate.
Wani, Nisar A.; Jehangir, Majid; Lone, Parveen A.
2017-01-01
Purpose: To highlight the role of constructive interference steady state (CISS) magnetic resonance imaging (MRI) in the diagnosis of Tolosa-Hunt Syndrome (THS). Case Report: We describe a case of THS in a 55-year-old woman presenting with left painful opthalmoplegia that was diagnosed by CISS MRI. Patient responded to steroid treatment and the lesion resolved. Conclusion: Imaging with MRI can help in making the diagnosis of THS by demonstrating an enhancing soft tissue lesion in the cavernous sinus and orbital apex resolving with steroids. CISS MRI is a sensitive sequence for diagnosis and follow-up imaging in THS. PMID:28299013
Optomechanical self-oscillations in an anharmonic potential: engineering a nonclassical steady state
NASA Astrophysics Data System (ADS)
Grimm, Manuel; Bruder, Christoph; Lörch, Niels
2016-09-01
We study self-oscillations of an optomechanical system, where coherent mechanical oscillations are induced by a driven optical or microwave cavity, for the case of an anharmonic mechanical oscillator potential. A semiclassical analytical model is developed to characterize the limit cycle for large mechanical amplitudes corresponding to a weak nonlinearity. As a result, we predict conditions to achieve subpoissonian phonon statistics in the steady state, indicating classically forbidden behavior. We compare with numerical simulations and find very good agreement. Our model is quite general and can be applied to other physical systems such as trapped ions or superconducting circuits.
Nonequilibrium steady state transport of collective-qubit system in strong coupling regime
NASA Astrophysics Data System (ADS)
Wang, Chen; Sun, Ke-Wei
2015-11-01
We investigate the steady state photon transport in a nonequilibrium collective-qubit model. By adopting the noninteracting blip approximation, which is applicable in the strong photon-qubit coupling regime, we describe the essential contribution of indirect qubit-qubit interaction to the population distribution, mediated by the photonic baths. The linear relations of both the optimal flux and noise power with the qubits system size are obtained. Moreover, the inversed power-law style for the finite-size scaling of the optimal photon-qubit coupling strength is exhibited, which is proposed to be universal.
Dust Devil Steady-State Structure from a Fluid Dynamics Perspective
NASA Astrophysics Data System (ADS)
Kurgansky, Michael V.; Lorenz, Ralph D.; Renno, Nilton O.; Takemi, Tetsuya; Gu, Zhaolin; Wei, Wei
2016-11-01
Simple analytical models for the flow structure of dust devils in steady state, and a "thermophysical" scaling theory that explains how these flow structures are maintained are reviewed. Then, results from high-resolution numerical simulations are used to provide insights into the structure of dust-devil-like vortices and study the impact of surface roughness on them. The article concludes with an overview of the influence of lofted dust on the flow structure of dust devils and a discussion of open questions.
Existence of a steady state of a natural convective flow in a confined medium
NASA Astrophysics Data System (ADS)
Pignatel, J.-F.; Marcillat, J.
1983-04-01
Experimental results are presented from a study of convective flow in a parallelipiped-shaped cavity with walls maintained at different temperatures. Resistive heaters permitted varying the wall temperatures up to 150 C, and the container could be tilted from 0-90 deg. Air was used as the fluid medium, with Rayleigh numbers from 2000-1,000,000. The flows studied featured the appearances of both steady and unsteady instabilities. Attention was given to vertical movements and a two-dimensional numerical model was defined. Attempts were made to identify the limits of a steady state in terms of the Rayleigh number, the shape factors, and the tilt of the cavity.
Stress-Temperature Scaling for Steady-State Flow in Metallic Glasses
NASA Astrophysics Data System (ADS)
Guan, Pengfei; Chen, Mingwei; Egami, Takeshi
2010-05-01
Through computer simulation of steady-state flow in a Zr50Cu40Al10 metallic glass using a set of realistic potentials we find a simple scaling relationship between temperature and stress as they affect viscosity. The scaling relationship provides new insight into the microscopic mechanism of shear flow in the glassy state, in terms of the elastic energy of the applied stress modifying the local energy landscape. The results suggest that the plastic flow and mechanical failure in metallic glasses are consequences of stress-induced glass transition.
Test of the steady-state fluctuation theorem in turbulent Rayleigh-B'enard convection
NASA Astrophysics Data System (ADS)
Tong, Penger; Shang, Xiaodong
2005-03-01
Local convective heat flux in turbulent thermal convection is obtained from simultaneous velocity and temperature measurements in an aspect-ratio-one cell filled with water. It is found that large positive fluctuations of the vertical heat flux occurs more often in the plume-dominated sidewall region and their histograms are highly asymmetric. The statistical properties of the time-averaged local flux fluctuations are analyzed and the results are compared with the predictions of the steady state fluctuation theorem of Gallavotti and Cohen. Work supported by the Research Grants Council of Hong Kong SAR under Grant Nos. HKUST603003 (P.T.) and CUHK403003 (K.Q.X.).
Test of steady-state fluctuation theorem in turbulent Rayleigh-Bénard convection
NASA Astrophysics Data System (ADS)
Shang, X.-D.; Tong, P.; Xia, K.-Q.
2005-07-01
The local entropy production rate σ(r,t) in turbulent thermal convection is obtained from simultaneous velocity and temperature measurements in an aspect-ratio-one cell filled with water. The statistical properties of the time-averaged σ(r,t) are analyzed and the results are compared with the predictions of the steady-state fluctuation theorem (SSFT) of Gallavotti and Cohen. The experiment reveals that the SSFT can indeed be extended to the local variables, but further development is needed in order to incorporate the common dynamic complexities of far-from-equilibrium systems into the theory.
Test of steady-state fluctuation theorem in turbulent Rayleigh-Bénard convection.
Shang, X-D; Tong, P; Xia, K-Q
2005-07-01
The local entropy production rate sigma (r,t) in turbulent thermal convection is obtained from simultaneous velocity and temperature measurements in an aspect-ratio-one cell filled with water. The statistical properties of the time-averaged sigma (r,t) are analyzed and the results are compared with the predictions of the steady-state fluctuation theorem (SSFT) of Gallavotti and Cohen. The experiment reveals that the SSFT can indeed be extended to the local variables, but further development is needed in order to incorporate the common dynamic complexities of far-from-equilibrium systems into the theory.
General Linewidth Formula for Steady-State Multimode Lasing in Arbitrary Cavities
NASA Astrophysics Data System (ADS)
Chong, Y. D.; Stone, A. Douglas
2012-08-01
A formula for the laser linewidth of arbitrary cavities in the multimode nonlinear regime is derived from a scattering analysis of the solutions to semiclassical laser theory. The theory generalizes previous treatments of the effects of gain and openness described by the Petermann factor. The linewidth is expressed using quantities based on the nonlinear scattering matrix, which can be computed from steady-state ab initio laser theory; unlike previous treatments, no passive cavity or phenomenological parameters are involved. We find that low cavity quality factor, combined with significant dielectric dispersion, can cause substantial deviations from the Shawlow-Townes-Petermann theory.